Citrus Sinensis ID: 004059

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770------
MQAADQTVISLRPGGGGGPRGTRLFTHRFDSSSTPSSDSQTLPPHGGVASAFKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTSGQEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQLLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcc
ccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHHccccHHHHcccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccEEHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHccccHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHccccccHHHHHHHHHHHHccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHccHHHHHHHHHHHcc
mqaadqtvislrpgggggprgtrlfthrfdssstpssdsqtlpphggvasafkmgdlrfegheRVRYTREQLLQLKEVAQLTEDILKIKQEIESefdgegqswggraennnLQSQFQARYLEAdnrdwrtrsttsgqEKSLEANQEKMefgahegqlnsQFASAQIstnqgagpapalikaevpwsarrgnlsekDRVLKTVKGILNkltpekfdvlkgqlidsgittpDILKGVIELIFDKavleptfcPMYALLCSdlneklppfpsdepggkditfKRILLNHCQEAFEGADNTRAEIRQmtapeqemERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQLLEndgktcpaeeNVEAICQFFNTIgkqldenpksrrvnDVYFSRLKelttnsqlvprlRFMIHDVldlrannwvprreEMKAKTITEIHSEAEknlglrpgatammrngrtgatggmgpggfpiarpgtggmmpgmpgtqkmpgmpgfdtdnwevprsrtmprgdskspsqfpgrvqspligkspsinskflpqgsggiisgktsallqgsptpsarpsgiasgvepltqytkpvapaasvvaspekpsapvtklNLADLRKKTVSLLEEYFSIRILDEALQCVEelraptyhpEVVKEAIALALekippcvePVIQLLEFLLNknvlttrdigTGCLLYGSLlddigidlpkapnnfgEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKsiqsspagQEVLAVQGAEVQACESLLT
mqaadqtvislrpgggggpRGTRLFTHRFDssstpssdsqtlppHGGVASAFKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWrtrsttsgqeksLEANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVpwsarrgnlsekdrvlKTVKGilnkltpekfdvlkgqlidsgitTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAfegadntraEIRQMtapeqemermDQERLVKLRTLGNIRLIGEllkqkmvpEKIVHHIVQLLENDGKTCPAEENVEAICQFFNTigkqldenpksrrVNDVYFSRLkelttnsqlvprlrFMIHDvldlrannwvprreEMKAKTITEihseaeknlglrpgATAMMRNGRtgatggmgpgGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRtmprgdskspsqfpGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAAsvvaspekpsapvtklnladLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
MQAADQTVISLrpgggggprgTRLFTHRFdssstpssdsQTLPPHGGVASAFKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTSGQEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQLLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAmmrngrtgatggmgpggFPIARpgtggmmpgmpgtqkmpgmpgFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTkpvapaasvvaspekpsapvTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
***************************************************FKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIK*********************************************************************************************VPW**********DRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNE*************DITFKRILLNHCQEAF***************************LVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQLLENDGKTCPAEENVEAICQFFNTIGKQLD*****RRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPR**********************************************************************************************************************************************************************************LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAM****************************
******************************************************************YTREQLLQLKE*A*************************************************************************************************************************TVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPF******GKDITFKRILLNHCQEAFEGAD**********************RLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQLLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTT*SQLVPRLRFMIHDVLDLRANNW**************************************************************************************************************************************************************************************NLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMK**************QGAEVQACESLL*
MQAADQTVISLRPGGGGGPRGTRLFTHR***************PHGGVASAFKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIES********WGGRAENNNLQSQFQARYLEADNRD***************ANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQLLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRS*****************VQSPLIGKSPSINSKFLPQGSGGIISGKTSAL************GIASGVEPLTQYTKPVA**************PVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
*****QTVISL*PGG*********************************************GHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWG****************************************************************************************SEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMT**EQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQLLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNL**************************************************************************************************************************************************************LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSS**G*E***V**AEVQ*****L*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQAADQTVISLRPGGGGGPRGTRLFTHRFDSSSTPSSDSQTLPPHGGVASAFKMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTSGQEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQLLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query776 2.2.26 [Sep-21-2011]
Q93ZT6780 Eukaryotic translation in yes no 0.980 0.975 0.596 0.0
Q03387788 Eukaryotic translation in N/A no 0.951 0.936 0.597 0.0
Q84PB3793 Eukaryotic translation in yes no 0.914 0.895 0.607 0.0
Q41583787 Eukaryotic translation in N/A no 0.951 0.937 0.589 0.0
Q6K641780 Eukaryotic translation in no no 0.980 0.975 0.593 0.0
O82233747 Eukaryotic translation in no no 0.945 0.982 0.566 0.0
Q5Z5Q3711 Zinc finger CCCH domain-c no no 0.375 0.409 0.435 3e-61
B9FXV51792 Eukaryotic translation in no no 0.653 0.282 0.332 1e-55
G5CEW61488 Eukaryotic translation in N/A no 0.378 0.197 0.381 4e-49
Q5R7J9 907 Eukaryotic translation in yes no 0.679 0.581 0.292 3e-44
>sp|Q93ZT6|IF4G1_ARATH Eukaryotic translation initiation factor isoform 4G-1 OS=Arabidopsis thaliana GN=EIF(ISO)4G1 PE=1 SV=1 Back     alignment and function desciption
 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/793 (59%), Positives = 593/793 (74%), Gaps = 32/793 (4%)

Query: 1   MQAADQTVISLRPGGGGGPRGTRLFTHRFDSSSTPSSDSQTLP--PHGGVASA---FKMG 55
           MQ  DQTV+SLRPGGG G R     +     S    S S      PHGG  ++   FK G
Sbjct: 1   MQQGDQTVLSLRPGGGRGNRLFGSSSSSSSLSFGSLSSSDLPLLRPHGGAPASSFPFKGG 60

Query: 56  DLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSW--GGRAENNNLQ 113
           D RF+G ERV+YTREQLL+LKE  QL+++IL++++E  +E  GE  +W  G    +N + 
Sbjct: 61  DSRFDGRERVKYTREQLLELKETTQLSDEILRVQRETAAELFGEEGTWARGESVVSNLVP 120

Query: 114 SQFQARYLEADNRDWRTRSTT---SGQEKSLEANQEKMEFGAHEG-------QLNSQFAS 163
            Q  +R+ E D+RDWR+RST    SG+E+S +  +E  +    E        Q NSQF+ 
Sbjct: 121 VQSASRFSEPDSRDWRSRSTQPPPSGEERSWDNLREAKDSRYVEASQYNRQDQPNSQFSR 180

Query: 164 AQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLID 223
           A IS+NQG GPAP L+KAEVPWSARRGNLSE DRVLKTVKGILNKLTPEK+D+LKGQLI+
Sbjct: 181 ANISSNQGGGPAPVLVKAEVPWSARRGNLSENDRVLKTVKGILNKLTPEKYDLLKGQLIE 240

Query: 224 SGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRIL 283
           SGIT+ DILKGVI LIFDKAVLEPTFCPMYA LCSD+N++LP FP  EPG K+ITFKR+L
Sbjct: 241 SGITSADILKGVITLIFDKAVLEPTFCPMYAKLCSDINDQLPTFPPAEPGDKEITFKRVL 300

Query: 284 LNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEK 343
           LN CQEAFEGA   R E+RQM+AP+QE ER D+E+L+KL+TLGNIRLIGELLKQKMVPEK
Sbjct: 301 LNICQEAFEGASQLREELRQMSAPDQEAERNDKEKLLKLKTLGNIRLIGELLKQKMVPEK 360

Query: 344 IVHHIVQ-LLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTN 402
           IVHHIVQ LL  D K CPAEENVEAIC FF TIGKQLD N KS+R+NDVYF RL+ L+ N
Sbjct: 361 IVHHIVQELLGADEKVCPAEENVEAICHFFKTIGKQLDGNVKSKRINDVYFKRLQALSKN 420

Query: 403 SQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRT 462
            QL  RLRFM+ +++D+R+N WVPRREEMKA+TITEIH+EAEKNLGLRPGATA MR G  
Sbjct: 421 PQLELRLRFMVQNIIDMRSNGWVPRREEMKARTITEIHTEAEKNLGLRPGATANMRRGMV 480

Query: 463 GATGGMGPGG-FPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRTMPRGDSKSPS 521
            + G + PG  +P  RPG GG+MPGMPGT++MPGMPG D DNWEVPR+R+M R D     
Sbjct: 481 SSGGPVSPGPVYPGGRPGAGGLMPGMPGTRRMPGMPGVDNDNWEVPRTRSMSRRDG---- 536

Query: 522 QFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQ 581
             PG + SP + KS S+N++ LPQGS GI+SGKTSALLQGS + S RP  +++      +
Sbjct: 537 --PGPLHSPAVSKSASMNTRLLPQGSSGIMSGKTSALLQGSGSVS-RPVTVSA-----ER 588

Query: 582 YTKPVAPAASVVASPEKPSAPVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAP 641
             + VAP  +V    EKP     KL+   L++KT SLLEEYF++R+L EALQCVEEL  P
Sbjct: 589 PAQSVAP-LTVPVPVEKPQPSGPKLSEEVLQRKTKSLLEEYFNVRLLGEALQCVEELGLP 647

Query: 642 TYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGID 701
           +YHPE VKEAI+L+LEK PP VEP+  LLE+LL+K V+  +D+ TG LLYG++LDDIGID
Sbjct: 648 SYHPEFVKEAISLSLEKSPPVVEPIATLLEYLLSKKVVAPKDLETGFLLYGAMLDDIGID 707

Query: 702 LPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVL 761
           LPKAPNNFGE+VGKL++A  +DF +++E++ K+ED+ F++ +  AA++ ++SS  G+ +L
Sbjct: 708 LPKAPNNFGEIVGKLILAGGVDFKLVREIIGKMEDDRFQKMVVDAAVRIVESSEQGKSLL 767

Query: 762 AVQGAEVQACESL 774
           A Q A+++AC +L
Sbjct: 768 ASQAADIEACRNL 780
Plays a role in the accumulation of some potyvirus during viral infection.
Arabidopsis thaliana (taxid: 3702)
>sp|Q03387|IF4G1_WHEAT Eukaryotic translation initiation factor isoform 4G-1 OS=Triticum aestivum PE=1 SV=2 Back     alignment and function description
>sp|Q84PB3|IF4G1_ORYSJ Eukaryotic translation initiation factor isoform 4G-1 OS=Oryza sativa subsp. japonica GN=Os04g0499300 PE=2 SV=2 Back     alignment and function description
>sp|Q41583|IF4G2_WHEAT Eukaryotic translation initiation factor isoform 4G-2 OS=Triticum aestivum PE=2 SV=1 Back     alignment and function description
>sp|Q6K641|IF4G2_ORYSJ Eukaryotic translation initiation factor isoform 4G-2 OS=Oryza sativa subsp. japonica GN=Os02g0611500 PE=2 SV=1 Back     alignment and function description
>sp|O82233|IF4G2_ARATH Eukaryotic translation initiation factor isoform 4G-2 OS=Arabidopsis thaliana GN=EIF(ISO)4G2 PE=1 SV=1 Back     alignment and function description
>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica GN=Os06g0520600 PE=2 SV=1 Back     alignment and function description
>sp|B9FXV5|IF4G_ORYSJ Eukaryotic translation initiation factor 4G OS=Oryza sativa subsp. japonica GN=Os07g0555200 PE=2 SV=2 Back     alignment and function description
>sp|G5CEW6|IF4G_WHEAT Eukaryotic translation initiation factor 4G OS=Triticum aestivum PE=1 SV=1 Back     alignment and function description
>sp|Q5R7J9|IF4G2_PONAB Eukaryotic translation initiation factor 4 gamma 2 OS=Pongo abelii GN=EIF4G2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query776
224143334750 predicted protein [Populus trichocarpa] 0.965 0.998 0.737 0.0
359484894795 PREDICTED: eukaryotic initiation factor 0.992 0.968 0.705 0.0
147833057794 hypothetical protein VITISV_013807 [Viti 0.990 0.968 0.706 0.0
359484892794 PREDICTED: eukaryotic initiation factor 0.990 0.968 0.705 0.0
359475890791 PREDICTED: eukaryotic initiation factor 0.993 0.974 0.727 0.0
224092613766 predicted protein [Populus trichocarpa] 0.978 0.990 0.736 0.0
356562555789 PREDICTED: eukaryotic initiation factor 0.988 0.972 0.680 0.0
356562557792 PREDICTED: eukaryotic initiation factor 0.989 0.969 0.677 0.0
356500679789 PREDICTED: eukaryotic initiation factor 0.987 0.970 0.679 0.0
224142359793 predicted protein [Populus trichocarpa] 0.985 0.964 0.672 0.0
>gi|224143334|ref|XP_002324920.1| predicted protein [Populus trichocarpa] gi|222866354|gb|EEF03485.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1100 bits (2846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/777 (73%), Positives = 640/777 (82%), Gaps = 28/777 (3%)

Query: 1   MQAADQTVISLRPGGGGGPRGTRLFTHRFDSSSTPSSDSQTLPPHGGVASAFKMGDLRFE 60
           MQA   TVISLRPGGG    G   F   F   +T                    G+LRFE
Sbjct: 1   MQADQTTVISLRPGGGSN--GVFPFFQVFVLPAT--------------------GELRFE 38

Query: 61  GHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARY 120
            HER+RYTR+QLLQLKEV  + EDILKI+QEIESEF GE Q+W     + +LQ Q Q+RY
Sbjct: 39  DHERIRYTRDQLLQLKEVENVPEDILKIRQEIESEFVGEDQTWS--HADGSLQPQSQSRY 96

Query: 121 LEADNRDWRTRSTTSGQEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGAGPAPALIK 180
            E DNRDWR RS   G+++S EA +E  EF   + QLNSQFASAQI+ NQ  GPAPALIK
Sbjct: 97  SEPDNRDWRGRSAAFGEDRSREAIRENKEFYNRQDQLNSQFASAQITANQRVGPAPALIK 156

Query: 181 AEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIF 240
           AEVPWS RRGNLSE++RVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVI LIF
Sbjct: 157 AEVPWSVRRGNLSEEERVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVISLIF 216

Query: 241 DKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAE 300
           DKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGK+ITFKRILLN+CQEAFEGA N RAE
Sbjct: 217 DKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKEITFKRILLNNCQEAFEGAGNLRAE 276

Query: 301 IRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQ-LLENDGKTC 359
           I ++TAPEQEMER D+ERLVKLRT+GN+RLIGELLKQKMVPEKIVHHIVQ LL ND KTC
Sbjct: 277 ISKLTAPEQEMERRDKERLVKLRTMGNMRLIGELLKQKMVPEKIVHHIVQELLGNDSKTC 336

Query: 360 PAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDL 419
           PAEENVEAICQFFNTIGKQLDENPK+RRVNDVYFSRLKELTTN  L PR RFM+ DVLDL
Sbjct: 337 PAEENVEAICQFFNTIGKQLDENPKARRVNDVYFSRLKELTTNPHLAPRCRFMVRDVLDL 396

Query: 420 RANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPG 479
           RAN+WVPRREE+KAKTI+EIHSEAEKNLGLRPGATA+MRNGR  ATGG+GPGGFPI RPG
Sbjct: 397 RANSWVPRREEVKAKTISEIHSEAEKNLGLRPGATAVMRNGRN-ATGGVGPGGFPIGRPG 455

Query: 480 TGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSIN 539
           +GGMMPGMPG  KMPG+PG D DNWEVPRSR MPRG+S  P+   G V + LI KSP +N
Sbjct: 456 SGGMMPGMPGMMKMPGIPGLDADNWEVPRSRAMPRGNSFGPTHVAGHVPTSLINKSPPLN 515

Query: 540 SKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKP 599
           ++ LPQGSGG+I+GK S LLQGS  PS RP G A+  EP  Q  KPVAPA S + SP+KP
Sbjct: 516 ARLLPQGSGGVIAGKPSLLLQGSGAPS-RP-GFATRTEPAGQTPKPVAPAVSAIPSPQKP 573

Query: 600 SAPVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI 659
            AP T+ N  DLR+KT+SLLEEYFS+RILDEALQCVEEL+  ++HPEV KEAIALALEK 
Sbjct: 574 LAPTTRSNPDDLRRKTISLLEEYFSVRILDEALQCVEELKDTSFHPEVAKEAIALALEKS 633

Query: 660 PPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVA 719
           PPCVEPV++LLEFLL KNVLT RDIGTGCLLYGS LDDIGIDLPKAPNNFGE++G LVVA
Sbjct: 634 PPCVEPVVKLLEFLLTKNVLTARDIGTGCLLYGSSLDDIGIDLPKAPNNFGEILGSLVVA 693

Query: 720 KSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT 776
           + LDF V KEVLKKVED+ FR++IF++AM SI S+P+GQEVLA QG+ +QACESLL+
Sbjct: 694 QGLDFEVFKEVLKKVEDDRFRKAIFSSAMMSINSNPSGQEVLATQGSNIQACESLLS 750

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359484894|ref|XP_003633181.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147833057|emb|CAN70546.1| hypothetical protein VITISV_013807 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484892|ref|XP_002277218.2| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475890|ref|XP_002285559.2| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224092613|ref|XP_002309681.1| predicted protein [Populus trichocarpa] gi|222855657|gb|EEE93204.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356562555|ref|XP_003549535.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356562557|ref|XP_003549536.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356500679|ref|XP_003519159.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like [Glycine max] Back     alignment and taxonomy information
>gi|224142359|ref|XP_002324526.1| predicted protein [Populus trichocarpa] gi|222865960|gb|EEF03091.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query776
TAIR|locus:2174353780 eIFiso4G1 "AT5G57870" [Arabido 0.976 0.971 0.557 5.9e-215
UNIPROTKB|Q1MSJ4793 eif(iso)4g "Putative eukaryoti 0.988 0.967 0.552 5.2e-207
UNIPROTKB|Q1MSJ3793 eif(iso)4g "Putative eukaryoti 0.988 0.967 0.551 1.4e-206
UNIPROTKB|Q1MSJ1793 eif(iso)4g "Putative eukaryoti 0.988 0.967 0.55 6e-206
UNIPROTKB|Q1MSJ0793 eif(iso)4g "Putative eukaryoti 0.988 0.967 0.548 1.6e-205
UNIPROTKB|Q1MSJ2790 eif(iso)4g "Putative eukaryoti 0.984 0.967 0.546 2.7e-203
TAIR|locus:2061370747 eIFiso4G2 "AT2G24050" [Arabido 0.774 0.804 0.590 1.7e-185
TAIR|locus:2131919263 AT4G30680 "AT4G30680" [Arabido 0.287 0.847 0.495 2.6e-54
TAIR|locus:20819271727 EIF4G "AT3G60240" [Arabidopsis 0.338 0.152 0.418 2.3e-50
UNIPROTKB|G3N2H3 1228 EIF4G3 "Uncharacterized protei 0.332 0.210 0.395 8.2e-48
TAIR|locus:2174353 eIFiso4G1 "AT5G57870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2077 (736.2 bits), Expect = 5.9e-215, P = 5.9e-215
 Identities = 444/796 (55%), Positives = 554/796 (69%)

Query:     1 MQAADQTVISLXXXXXXXXXXTRLF--THRFXXXXXXXXXXQTLP---PHGGV-ASAF-- 52
             MQ  DQTV+SL           RLF  +               LP   PHGG  AS+F  
Sbjct:     1 MQQGDQTVLSLRPGGGRG---NRLFGSSSSSSSLSFGSLSSSDLPLLRPHGGAPASSFPF 57

Query:    53 KMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWG-GRAENNN 111
             K GD RF+G ERV+YTREQLL+LKE  QL+++IL++++E  +E  GE  +W  G +  +N
Sbjct:    58 KGGDSRFDGRERVKYTREQLLELKETTQLSDEILRVQRETAAELFGEEGTWARGESVVSN 117

Query:   112 LQS-QFQARYLEADNRDWRTRSTT---SGQEKSL----EANQEK-MEFGAH--EGQLNSQ 160
             L   Q  +R+ E D+RDWR+RST    SG+E+S     EA   + +E   +  + Q NSQ
Sbjct:   118 LVPVQSASRFSEPDSRDWRSRSTQPPPSGEERSWDNLREAKDSRYVEASQYNRQDQPNSQ 177

Query:   161 FASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQ 220
             F+ A IS+NQG GPAP L+KAEVPWSARRGNLSE DRVLKTVKGILNKLTPEK+D+LKGQ
Sbjct:   178 FSRANISSNQGGGPAPVLVKAEVPWSARRGNLSENDRVLKTVKGILNKLTPEKYDLLKGQ 237

Query:   221 LIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFK 280
             LI+SGIT+ DILKGVI LIFDKAVLEPTFCPMYA LCSD+N++LP FP  EPG K+ITFK
Sbjct:   238 LIESGITSADILKGVITLIFDKAVLEPTFCPMYAKLCSDINDQLPTFPPAEPGDKEITFK 297

Query:   281 RILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMV 340
             R+LLN CQEAFEGA   R E+RQM+AP+QE ER D+E+L+KL+TLGNIRLIGELLKQKMV
Sbjct:   298 RVLLNICQEAFEGASQLREELRQMSAPDQEAERNDKEKLLKLKTLGNIRLIGELLKQKMV 357

Query:   341 PEKIVHHIVQ-LLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKEL 399
             PEKIVHHIVQ LL  D K CPAEENVEAIC FF TIGKQLD N KS+R+NDVYF RL+ L
Sbjct:   358 PEKIVHHIVQELLGADEKVCPAEENVEAICHFFKTIGKQLDGNVKSKRINDVYFKRLQAL 417

Query:   400 TTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAXXXX 459
             + N QL  RLRFM+ +++D+R+N WVPRREEMKA+TITEIH+EAEKNLGLRPGATA    
Sbjct:   418 SKNPQLELRLRFMVQNIIDMRSNGWVPRREEMKARTITEIHTEAEKNLGLRPGATANMRR 477

Query:   460 XXXXXXXXXXXX-XFPIARXXXXXXXXXXXXXXXXXXXXXFDTDNWEVPRSRTMPRGDSK 518
                           +P  R                      D DNWEVPR+R+M R D  
Sbjct:   478 GMVSSGGPVSPGPVYPGGRPGAGGLMPGMPGTRRMPGMPGVDNDNWEVPRTRSMSRRDG- 536

Query:   519 SPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEP 578
                  PG + SP + KS S+N++ LPQGS GI+SGKTSALLQGS + S RP  + S   P
Sbjct:   537 -----PGPLHSPAVSKSASMNTRLLPQGSSGIMSGKTSALLQGSGSVS-RPVTV-SAERP 589

Query:   579 LTQYTXXXXXXXXXXXXXXXXXXXXTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEEL 638
                                       KL+   L++KT SLLEEYF++R+L EALQCVEEL
Sbjct:   590 -----AQSVAPLTVPVPVEKPQPSGPKLSEEVLQRKTKSLLEEYFNVRLLGEALQCVEEL 644

Query:   639 RAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDI 698
               P+YHPE VKEAI+L+LEK PP VEP+  LLE+LL+K V+  +D+ TG LLYG++LDDI
Sbjct:   645 GLPSYHPEFVKEAISLSLEKSPPVVEPIATLLEYLLSKKVVAPKDLETGFLLYGAMLDDI 704

Query:   699 GIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQ 758
             GIDLPKAPNNFGE+VGKL++A  +DF +++E++ K+ED+ F++ +  AA++ ++SS  G+
Sbjct:   705 GIDLPKAPNNFGEIVGKLILAGGVDFKLVREIIGKMEDDRFQKMVVDAAVRIVESSEQGK 764

Query:   759 EVLAVQGAEVQACESL 774
              +LA Q A+++AC +L
Sbjct:   765 SLLASQAADIEACRNL 780
GO:0003723 "RNA binding" evidence=ISS
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0006412 "translation" evidence=ISS
GO:0006413 "translational initiation" evidence=ISS
GO:0016070 "RNA metabolic process" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|Q1MSJ4 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ3 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ1 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ0 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ2 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
TAIR|locus:2061370 eIFiso4G2 "AT2G24050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131919 AT4G30680 "AT4G30680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081927 EIF4G "AT3G60240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G3N2H3 EIF4G3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q41583IF4G2_WHEATNo assigned EC number0.58960.95100.9377N/Ano
Q84PB3IF4G1_ORYSJNo assigned EC number0.60700.91490.8953yesno
Q93ZT6IF4G1_ARATHNo assigned EC number0.59640.98060.9756yesno
Q03387IF4G1_WHEATNo assigned EC number0.59790.95100.9365N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_XVIII0175
hypothetical protein (750 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query776
pfam02854198 pfam02854, MIF4G, MIF4G domain 5e-50
smart00543200 smart00543, MIF4G, Middle domain of eukaryotic ini 8e-45
pfam02847113 pfam02847, MA3, MA3 domain 2e-29
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 5e-28
>gnl|CDD|217253 pfam02854, MIF4G, MIF4G domain Back     alignment and domain information 
 Score =  174 bits (442), Expect = 5e-50
 Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 35/229 (15%)

Query: 199 LKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCS 258
           LK VKG+LNKL+P  F+ +  +L+   ++  ++LK ++ELIF+KAV EP F P YA LC+
Sbjct: 1   LKKVKGLLNKLSPSNFEKIIDELLKLNMSDKNLLKYILELIFEKAVEEPNFIPAYARLCA 60

Query: 259 DLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQER 318
            LN K P             F  +LLN  QE FE                      ++ER
Sbjct: 61  GLNSKNP------------DFGELLLNRLQEEFEKGVE------------------EEER 90

Query: 319 LVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQ-LLENDGKTCP-AEENVEAICQFFNTIG 376
             + R LG +R +GEL   K++ EKI+   ++ LLE+  +  P  E ++E +     T G
Sbjct: 91  GNRKRRLGLVRFLGELFNFKVLTEKIILECLKELLESLTEEDPRDEFSLEILLLLLTTCG 150

Query: 377 KQLDENPKSRRVNDVYFSRLKE--LTTNSQLVPRLRFMIHDVLDLRANN 423
           K LD   K +++ D    R+++  L+ + +L  RLRFM+ D+++LR N 
Sbjct: 151 KLLD-REKLKKLMDEILERIQKYLLSADPELSSRLRFMLEDLIELRKNK 198

MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Length = 198
>gnl|CDD|214713 smart00543, MIF4G, Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 776
KOG0401970 consensus Translation initiation factor 4F, riboso 100.0
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 99.98
smart00543200 MIF4G Middle domain of eukaryotic initiation facto 99.95
smart00544113 MA3 Domain in DAP-5, eIF4G, MA-3 and other protein 99.89
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 99.89
KOG0403 645 consensus Neoplastic transformation suppressor Pdc 99.84
KOG0403 645 consensus Neoplastic transformation suppressor Pdc 99.79
KOG2140739 consensus Uncharacterized conserved protein [Gener 99.75
KOG2141822 consensus Protein involved in high osmolarity sign 99.43
KOG3942348 consensus MIF4G domain-containing protein [Transla 98.81
KOG2051 1128 consensus Nonsense-mediated mRNA decay 2 protein [ 98.74
KOG0401970 consensus Translation initiation factor 4F, riboso 98.23
KOG20511128 consensus Nonsense-mediated mRNA decay 2 protein [ 97.56
KOG1104 759 consensus Nuclear cap-binding complex, subunit NCB 94.48
PF1215275 eIF_4G1: Eukaryotic translation initiation factor 89.85
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 85.8
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 84.14
smart00544113 MA3 Domain in DAP-5, eIF4G, MA-3 and other protein 81.66
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=7.1e-70  Score=656.92  Aligned_cols=758  Identities=30%  Similarity=0.423  Sum_probs=556.9

Q ss_pred             CcCCcc---eeEeccCCCCCCCCCccccccCCCC--CCC--CCCCCCCCCCCCCCc---ccccCCCccCCCcccccCHHH
Q 004059            2 QAADQT---VISLRPGGGGGPRGTRLFTHRFDSS--STP--SSDSQTLPPHGGVAS---AFKMGDLRFEGHERVRYTREQ   71 (776)
Q Consensus         2 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~y~~~~   71 (776)
                      +.+++.   +++++|+|..  ...+.|+.....+  .+.  ++....++.+++.+.   .......++....+..|....
T Consensus       142 ~~~~~s~~~~l~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~  219 (970)
T KOG0401|consen  142 QEGEPSSTKALILKKSGEE--ADDKAFGEPKESSLGEGQADSSTPKTSEDGIPFEKPPDPEEQKASDRMDALTLAFSEEL  219 (970)
T ss_pred             cCCCCCccccccccccccc--ccccccccccccccccccCCCCCcccccccCCCCCCCCcccccccccchhhhhhhhhhh
Confidence            345556   9999999995  3445555553322  221  222222455666433   445567778888899999999


Q ss_pred             HHHHHHHhhhcHHHHHhhhhhhccccCCCCCCCCCCCCCCchhhhhhhhhcccCccccccCCCC--Cccchhhhhhhhhh
Q 004059           72 LLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTS--GQEKSLEANQEKME  149 (776)
Q Consensus        72 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~~  149 (776)
                      +++......++.+++..+......+..++.+|.  ...+..+.....|..++.++||..+..+.  ...+.|++.++.+.
T Consensus       220 ~~~~e~~~~~~d~~~~~~e~~~~~~~~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  297 (970)
T KOG0401|consen  220 LLEAENTPRSSDEYVRRIEAEQEPLRPEEPSGL--RAIQKIPEKATERRAEESGRDKPEHEDQTKPAGNRLLDEPRESQP  297 (970)
T ss_pred             hhhhhhcCCcchHHHHHHHHHhhccCCccchhh--hcccccccccccccccccccccccccccccccccccccchhhhcc
Confidence            999988889999988888777788889999883  22224456777899999999998776664  33356666666654


Q ss_pred             hcccccc---ccchhhhhhcccCCCCCCCcchhcccCCcccccCCCChHHHHHHHHHHHHhcCChhhHHHHHHHHHHccC
Q 004059          150 FGAHEGQ---LNSQFASAQISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGI  226 (776)
Q Consensus       150 ~~~~~~~---~~~~~~~~~~~~~~~~~p~~~l~~~e~~w~~~~~~~~e~e~l~rkVk~ILNKLTpenFd~l~~qLl~l~I  226 (776)
                      ++++-.+   -...+.........+..|.+...++..+|...+..++..+++.+.|++|||||||++|+.++.+++++.|
T Consensus       298 ~~~~e~~~~~~~~~~~~~~~~~~~~~~ps~k~a~~~~~~~~~~~~~~~~~el~~~vrsilnkltp~~~~~l~~q~~~~~i  377 (970)
T KOG0401|consen  298 AENGEPAKKGVEEVEEVVLNFAQKAPSPSPKRAKSKSDQGAERKDVELKEELAKRVRSLLNKLTPERKELLIEQLIELNV  377 (970)
T ss_pred             ccccccccccchhhhHHHHHhccCCCCCcchhhccccccccccchhHHHHHHHHHHhhhcCCCchHHHHHHHHHHHhhcc
Confidence            4332110   1223333333344566778888888999988887788899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhhCCCCCCCCCCCchhhHHHHHHHHHHHHHhhhh-chHHHHhhcC
Q 004059          227 TTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGAD-NTRAEIRQMT  305 (776)
Q Consensus       227 ~t~e~Lk~VI~lIFeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~e~~gk~~~FR~~LLnrcQeeFe~~~-~~~~ei~~~~  305 (776)
                      ++.+.|++||.+||||||.||+||+|||+||..|.. .+.++..+..+..++||++||++||++|+... ...+++..+.
T Consensus       378 ~t~~~l~~vi~~vfdkAi~EP~f~~~yA~lc~~l~~-~~~~~~~~~~~~~~~fr~~lL~rcq~~fe~~~~~~~~~~~~~~  456 (970)
T KOG0401|consen  378 DTDDALKEVIELVFDKAINEPTFCAMYARLCFDLEG-PPSEPELDMGGDEINFRRLLLNRCQKEFEGEDDKIADEYSEAE  456 (970)
T ss_pred             CcHHHHhHHHHHHHHhhhcccccchhcchhcccccC-CccCCCcCCCCCcccHHHHHHHHhHHHhhcccHHHHHHhhhhc
Confidence            999999999999999999999999999999999998 55555555567789999999999999999987 5666777766


Q ss_pred             ChHH-HHHHhHHHHHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH-hhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCC
Q 004059          306 APEQ-EMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQ-LLENDGKTCPAEENVEAICQFFNTIGKQLDENP  383 (776)
Q Consensus       306 ~~e~-E~E~~e~e~~~Krr~LGnIrFIGELfk~~mL~e~Im~~ci~-LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~~  383 (776)
                      .+++ |.++++.++++++|+||||+|||+||+.+|++++|||.|++ ||..+.   ++|++|||+|+|++|||+.||...
T Consensus       457 ~~~~~e~~le~~k~~~~~rtlgn~~~ig~l~~~~ml~e~i~~~~v~~Ll~~~~---~~ee~ie~lc~f~~tig~~lD~~~  533 (970)
T KOG0401|consen  457 EPDELEEELEEEKYILRRRTLGNFRFIGELFKLKMLTEKIVHACVQKLLSDDQ---PSEESIECLCRFLTTIGKKLDFSK  533 (970)
T ss_pred             CchhHHHHHHhccceecCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhhhhHHhhhhcccccccccC
Confidence            6655 55666677788999999999999999999999999999999 888642   789999999999999999999754


Q ss_pred             cchhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhCCCCCcccccCCc-cHHHHHHHHHHhcCCCCchhhhhhcCCC
Q 004059          384 KSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAK-TITEIHSEAEKNLGLRPGATAMMRNGRT  462 (776)
Q Consensus       384 k~~~~md~yF~rL~~l~~~~~lssRiRFmL~dvidLR~nnW~~r~~~~~pk-ti~eIh~eae~~~~~~~~~~~~~r~~r~  462 (776)
                      .....||.||.+++.+...+++++|+|||++++||||.++|++|+.+.+++ +|++||.++.++....++....++..+.
T Consensus       534 ~s~r~md~~~~~~k~~~~~~~~s~r~RfM~~~~idlR~~~w~~rr~~~~~~~~ieei~~~~~~~~~~~p~~~~~~~~~~~  613 (970)
T KOG0401|consen  534 ESPRNMDEYFNSMKNLKRKPQRSNRIRFMLQSVIDLRKSGWGPRRAEETNDKPIEEIAPEAPSANRWSPKSLSKKTEGRL  613 (970)
T ss_pred             cccchhHHHHHHHHHhhhhhhhccchhhhhccccccccccccchhcccCCCCchhhcchhhhhhcccCcccccccccccc
Confidence            444449999999999999999999999999999999999999999988877 9999999998887655555444444432


Q ss_pred             CCC---CC-C----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCC--CCCCCCCCCCCCCCCCCCCCCC
Q 004059          463 GAT---GG-M----GPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSR--TMPRGDSKSPSQFPGRVQSPLI  532 (776)
Q Consensus       463 ~~~---g~-~----~~g~~~~~~~~~gg~~p~~~~~~~~p~~pg~~~d~~~~~~~~--s~~r~~~~~~~~~~~~~~~~~~  532 (776)
                      +..   +. .    .+.+....+...+.|+++++...-+..++.++.++|++....  ...+..+.. +++ ...+.+..
T Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~e~~~~~~k~~~~~~~~k~~~~-~~~-~~~~~~~~  691 (970)
T KOG0401|consen  614 AEESDSGLLGKEVVERKGKSGLRKLTPEMFDKISDPILDIADQSMDEEDGEASKQKGEQGGRKASDE-QHF-SSMRAPAL  691 (970)
T ss_pred             cccccccccCccccccccccccccCChhhcccccccccccchhhccccccchhhhcccccccccCcc-ccc-cccCCccc
Confidence            110   00 0    011122223344555665554433445556667777765332  121211111 011 01112222


Q ss_pred             CCCCCCC----CCcCCCCCCCCcCC--CcccccC---CCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 004059          533 GKSPSIN----SKFLPQGSGGIISG--KTSALLQ---GSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPV  603 (776)
Q Consensus       533 ~k~~~~n----~~~~p~gs~~~~sg--k~s~ll~---~~~~p~~r~~~~~~~~~~~~~~~~~~k~~~~~p~~~~~~~~~~  603 (776)
                      ++.....    ....++|+.+....  ..++...   ..+....++++....+     .+.-+.+.. .++.+.+.+...
T Consensus       692 ~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-----~~e~~~~~~-~~~~~~~~~~~~  765 (970)
T KOG0401|consen  692 EKVVPSLSSDIDDKRNRGSNGELLSDSYLSARCHEEFENGWSRELPSGKDGER-----EPEMMSPEY-YAAKAAKRAGLG  765 (970)
T ss_pred             cccccccccccccccccCCccccccccccchhhhhhccccccccCCCCccccc-----chhhcCccc-chhhhhhccCCc
Confidence            2211111    12334444431111  1111111   1111111111111000     001011100 011112222333


Q ss_pred             C--CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCCCH
Q 004059          604 T--KLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTT  681 (776)
Q Consensus       604 ~--~~s~eel~kki~~ll~EY~~~~D~~EA~~clkEL~~p~~~~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~~ls~  681 (776)
                      .  .++.+.+..+++.|++||++..+.+|++.|+++|++|.+|+.+|...|+..|++++..++++++||..|+..+.++.
T Consensus       766 ~v~~~~~~~l~~~sk~l~ee~~~~~~~~~~~~~ie~l~S~~~~~~~v~~~v~~~l~~~~~~~~~~~~ll~~l~~~~~~~~  845 (970)
T KOG0401|consen  766 LVIALSSELLELLSKSLLEEFLSLRLEKEALKCIEELESPSLLLKTVGENIEPTLEKSPQAVEELLQLLDILVSKNPLSI  845 (970)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhhHHHHHHhcCcccccChhHHHHHHHHHHHHHhcCcccH
Confidence            3  78899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCCh-HHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCchhh
Q 004059          682 RDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDF-IVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEV  760 (776)
Q Consensus       682 ~q~~~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~d~~l~~-~~v~~~~~~~~~~~~~~~~~~a~l~~l~~~~~g~~v  760 (776)
                      +++..||..++..++|+.||+|++|.|+++|++.++..+++++ ..+..+...+.+.+++..|+.+++..+...-+..++
T Consensus       846 ~~~~~~~~~~~~~~~d~~~d~pk~w~~~~e~~gp~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  925 (970)
T KOG0401|consen  846 ETLEIGYREKFKLADDKELDLPKGWNYIKEFLGPLIHQKILDESELVREILKNMRPNGRRSNVLFSVLEIVEKELGRADL  925 (970)
T ss_pred             HHHhhhHHHHHhhhHHHhcccccchhHHHHhhhhHhhhccccHHHHHHHHhhcCCccccccchHHHHHHHHHHhhhHHHH
Confidence            9999999999999999999999999999999999999999999 456788888999999999999999999988899999


Q ss_pred             HhhhhhhHHHHhhhh
Q 004059          761 LAVQGAEVQACESLL  775 (776)
Q Consensus       761 ~~~~~~~~~~~~~~~  775 (776)
                      .+..+....+|+.++
T Consensus       926 ~~~~~~~~~s~~~~~  940 (970)
T KOG0401|consen  926 GDIQRESFLSTKTLL  940 (970)
T ss_pred             HHHHHHhcccchhcc
Confidence            999999999988764

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms] Back     alignment and domain information
>KOG3942 consensus MIF4G domain-containing protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification] Back     alignment and domain information
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification] Back     alignment and domain information
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification] Back     alignment and domain information
>PF12152 eIF_4G1: Eukaryotic translation initiation factor 4G1; InterPro: IPR022745 The eukaryotic initiation factor 4G (eIF4G) is the core of a multicomponent switch controlling gene expression at the level of translation initiation Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query776
1hu3_A260 Middle Domain Of Human Eif4gii Length = 260 5e-39
2vso_E284 Crystal Structure Of A Translation Initiation Compl 3e-19
1ug3_A 339 C-Terminal Portion Of Human Eif4gi Length = 339 2e-06
2ion_A152 Crystal Structure Of The C-terminal Ma3 Domain Of P 3e-04
2kzt_B131 Structure Of The Tandem Ma-3 Region Of Pdcd4 Length 3e-04
3rk6_A234 Crystal Structure Of The Middle Domain Of Human Pai 3e-04
3eiq_C358 Crystal Structure Of Pdcd4-eif4a Length = 358 3e-04
2nsz_A129 1.15 Angstrom Crystal Structure Of The Ma3 Domain O 3e-04
2hm8_A136 Solution Structure Of The C-Terminal Ma-3 Domain Of 3e-04
2ggf_A137 Solution Structure Of The Ma3 Domain Of Human Progr 4e-04
3eij_A321 Crystal Structure Of Pdcd4 Length = 321 4e-04
>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii Length = 260 Back     alignment and structure 
Iteration: 1

 Score =  159 bits (402), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 101/260 (38%), Positives = 152/260 (58%), Gaps = 24/260 (9%)
Query: 198 VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLC 257
           + + V+ ILNKLTP+ F+ L  Q+    + T + LKGVI+L+F+KA+ EP+F   YA  C
Sbjct: 11  LFRKVRSILNKLTPQXFNQLXKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANXC 70
Query: 258 SDL-NEKLPPFPSDEPGGKDITFKRILLNHCQEAFE--GADN-----TRAEIRQMTAPEQ 309
             L   K+P   +D+PG   + F+++LLN CQ+ FE   AD+      + E+   +APE+
Sbjct: 71  RCLVTLKVP--XADKPGNT-VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEE 127
Query: 310 EMERMDQ----ERLVKLRTLGNIRLIGELLKQKMVPEKIVHH-IVQLLENDGKTCPAEEN 364
                D+    +   + R++GNI+ IGEL K K + E I H  +V+LL+N       EE+
Sbjct: 128 RTRLHDELEEAKDKARRRSIGNIKFIGELFKLKXLTEAIXHDCVVKLLKNHD-----EES 182
Query: 365 VEAICQFFNTIGKQLD-ENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANN 423
           +E +C+   TIGK LD E  K R   D YF++ +++    +   R+RF + DV+DLR  N
Sbjct: 183 LECLCRLLTTIGKDLDFEKAKPR--XDQYFNQXEKIVKERKTSSRIRFXLQDVIDLRLCN 240
Query: 424 WVPRREEMKAKTITEIHSEA 443
           WV RR +   KTI +IH EA
Sbjct: 241 WVSRRADQGPKTIEQIHKEA 260
>pdb|2VSO|E Chain E, Crystal Structure Of A Translation Initiation Complex Length = 284 Back     alignment and structure
>pdb|1UG3|A Chain A, C-Terminal Portion Of Human Eif4gi Length = 339 Back     alignment and structure
>pdb|2ION|A Chain A, Crystal Structure Of The C-terminal Ma3 Domain Of Pdcd4 (mouse); Form2 Length = 152 Back     alignment and structure
>pdb|2KZT|B Chain B, Structure Of The Tandem Ma-3 Region Of Pdcd4 Length = 131 Back     alignment and structure
>pdb|3RK6|A Chain A, Crystal Structure Of The Middle Domain Of Human Paip1 Length = 234 Back     alignment and structure
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a Length = 358 Back     alignment and structure
>pdb|2NSZ|A Chain A, 1.15 Angstrom Crystal Structure Of The Ma3 Domain Of Pdcd4 Length = 129 Back     alignment and structure
>pdb|2HM8|A Chain A, Solution Structure Of The C-Terminal Ma-3 Domain Of Pdcd4 Length = 136 Back     alignment and structure
>pdb|2GGF|A Chain A, Solution Structure Of The Ma3 Domain Of Human Programmed Cell Death 4 Length = 137 Back     alignment and structure
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4 Length = 321 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query776
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 4e-77
2vso_E284 Eukaryotic initiation factor 4F subunit P150; acet 6e-68
3rk6_A234 Polyadenylate-binding protein-interacting protein; 2e-56
2i2o_A224 EIF4G-like protein; protein structure initiative, 8e-55
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 1e-35
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 8e-34
2zu6_B 307 Programmed cell death protein 4; protein-protein c 1e-32
2zu6_B307 Programmed cell death protein 4; protein-protein c 5e-30
3eiq_C 358 Programmed cell death protein 4; PDCD4, anti-oncog 1e-32
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 7e-28
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 1e-32
1ug3_A 339 EIF4GI, eukaryotic protein synthesis initiation fa 4e-31
3l6a_A 364 Eukaryotic translation initiation factor 4 gamma; 6e-30
1uw4_B248 UPF2, regulator of nonsense transcripts 2; nonsens 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Length = 260 Back     alignment and structure
 Score =  248 bits (635), Expect = 4e-77
 Identities = 94/261 (36%), Positives = 146/261 (55%), Gaps = 18/261 (6%)

Query: 194 EKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMY 253
           +   + + V+ ILNKLTP+ F+ L  Q+    + T + LKGVI+L+F+KA+ EP+F   Y
Sbjct: 7   KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAY 66

Query: 254 ALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFE-------GADNTRAEIRQMTA 306
           A +C  L     P       G  + F+++LLN CQ+ FE         +  + E+   +A
Sbjct: 67  ANMCRCLVTLKVPMADKP--GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASA 124

Query: 307 PEQ----EMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQLLENDGKTCPAE 362
           PE+      E  + +   + R++GNI+ IGEL K KM+ E I+H  V  L  +      E
Sbjct: 125 PEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKN----HDE 180

Query: 363 ENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRAN 422
           E++E +C+   TIGK LD   K++   D YF++++++    +   R+RFM+ DV+DLR  
Sbjct: 181 ESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLC 239

Query: 423 NWVPRREEMKAKTITEIHSEA 443
           NWV RR +   KTI +IH EA
Sbjct: 240 NWVSRRADQGPKTIEQIHKEA 260
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Length = 284 Back     alignment and structure
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Length = 234 Back     alignment and structure
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio} Length = 224 Back     alignment and structure
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A Length = 165 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14 Length = 248 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query776
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 100.0
2vso_E284 Eukaryotic initiation factor 4F subunit P150; acet 100.0
3rk6_A234 Polyadenylate-binding protein-interacting protein; 100.0
2i2o_A224 EIF4G-like protein; protein structure initiative, 100.0
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 99.97
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 99.97
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 99.96
1ug3_A 339 EIF4GI, eukaryotic protein synthesis initiation fa 99.95
2zu6_B307 Programmed cell death protein 4; protein-protein c 99.94
3eiq_C 358 Programmed cell death protein 4; PDCD4, anti-oncog 99.94
2zu6_B 307 Programmed cell death protein 4; protein-protein c 99.93
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 99.93
3l6a_A 364 Eukaryotic translation initiation factor 4 gamma; 99.93
1uw4_B248 UPF2, regulator of nonsense transcripts 2; nonsens 99.62
1h2v_C 771 80 kDa nuclear CAP binding protein; CAP-binding-co 98.8
4gmj_A229 CCR4-NOT transcription complex subunit 1; mRNA dec 95.68
4b89_A249 General negative regulator of transcription subun; 95.27
1rf8_B100 Eukaryotic initiation factor 4F subunit P150; prot 85.5
3hxi_C21 Eukaryotic translation initiation factor 4E- bindi 81.23
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
Probab=100.00  E-value=2.1e-55  Score=463.09  Aligned_cols=240  Identities=40%  Similarity=0.723  Sum_probs=183.1

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh-hCCCCCCCCCC
Q 004059          195 KDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNE-KLPPFPSDEPG  273 (776)
Q Consensus       195 ~e~l~rkVk~ILNKLTpenFd~l~~qLl~l~I~t~e~Lk~VI~lIFeKAi~Ep~fs~mYA~LC~~L~~-~lp~~~~~e~~  273 (776)
                      .+++.|+|++|||||||+||+.|+.||+++++++.+.|++||++||+||+.||+||.|||+||..|+. .+|.+   +..
T Consensus         8 ~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~---~~~   84 (260)
T 1hu3_A            8 TQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMA---DKP   84 (260)
T ss_dssp             HHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC--------
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcc---cCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999988 46543   233


Q ss_pred             CchhhHHHHHHHHHHHHHhhhhchHH-------HHhhcCChHHH--H--HHhHHHHHHHHhhhhHHHHHHHHHhcCCCCH
Q 004059          274 GKDITFKRILLNHCQEAFEGADNTRA-------EIRQMTAPEQE--M--ERMDQERLVKLRTLGNIRLIGELLKQKMVPE  342 (776)
Q Consensus       274 gk~~~FR~~LLnrcQeeFe~~~~~~~-------ei~~~~~~e~E--~--E~~e~e~~~Krr~LGnIrFIGELfk~~mL~e  342 (776)
                      +....||++||++||++|++.+....       ++.....+++.  +  |..+.+.+.|+|++|||+||||||+++||++
T Consensus        85 ~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~  164 (260)
T 1hu3_A           85 GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTE  164 (260)
T ss_dssp             ----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCH
T ss_pred             ccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCH
Confidence            45688999999999999999875321       12111111110  0  1112224578999999999999999999999


Q ss_pred             HHHHHHHH-hhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHh
Q 004059          343 KIVHHIVQ-LLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRA  421 (776)
Q Consensus       343 ~Im~~ci~-LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~~k~~~~md~yF~rL~~l~~~~~lssRiRFmL~dvidLR~  421 (776)
                      +|||+|+. ||++     |+|++|||+|.||+|||+.|+. ++++..||.||.+|+.+..+.++|+|+||||+||+|||+
T Consensus       165 ~i~~~~l~~Ll~~-----~~e~~iE~l~~lL~tvG~~L~~-~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~dLR~  238 (260)
T 1hu3_A          165 AIMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRL  238 (260)
T ss_dssp             HHHHHHHHHHHHS-----CSHHHHHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            99999999 9985     7999999999999999999997 445568999999999999999999999999999999999


Q ss_pred             CCCCCcccccCCccHHHHHHHH
Q 004059          422 NNWVPRREEMKAKTITEIHSEA  443 (776)
Q Consensus       422 nnW~~r~~~~~pkti~eIh~ea  443 (776)
                      |||++++.+.+||||+|||+||
T Consensus       239 ~~W~~~~~~~~pkti~~i~~ea  260 (260)
T 1hu3_A          239 CNWVSRRADQGPKTIEQIHKEA  260 (260)
T ss_dssp             TTTCC-----------------
T ss_pred             cCCCCCccccCCCcHHHHHhhC
Confidence            9999999999999999999987
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Back     alignment and structure
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Back     alignment and structure
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio} Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Back     alignment and structure
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A* Back     alignment and structure
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A Back     alignment and structure
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B Back     alignment and structure
>1rf8_B Eukaryotic initiation factor 4F subunit P150; protein biosynthesis, translation regulat biosynthetic protein, translation; HET: MTN M7G; NMR {Saccharomyces cerevisiae} SCOP: a.210.1.1 Back     alignment and structure
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 776
d1hu3a_243 a.118.1.14 (A:) Eukaryotic initiation factor eIF4G 2e-66
d1uw4b_248 a.118.1.14 (B:) Regulator of nonsense transcripts 6e-46
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 6e-33
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 1e-31
d1h2vc1262 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-bin 1e-05
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 243 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  218 bits (556), Expect = 2e-66
 Identities = 85/243 (34%), Positives = 135/243 (55%), Gaps = 18/243 (7%)

Query: 194 EKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMY 253
           +   + + V+ ILNKLTP+ F+ L  Q+    + T + LKGVI+L+F+KA+ EP+F   Y
Sbjct: 7   KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAY 66

Query: 254 ALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGA-------DNTRAEIRQMTA 306
           A +C  L     P    +  G  + F+++LLN CQ+ FE         +  + E+   +A
Sbjct: 67  ANMCRCLVTLKVPM--ADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASA 124

Query: 307 PEQEM----ERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQLLENDGKTCPAE 362
           PE+      E  + +   + R++GNI+ IGEL K KM+ E I+H  V  L         E
Sbjct: 125 PEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKL----LKNHDE 180

Query: 363 ENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRAN 422
           E++E +C+   TIGK LD   K++   D YF++++++    +   R+RFM+ DV+DLR  
Sbjct: 181 ESLECLCRLLTTIGKDLDFE-KAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLC 239

Query: 423 NWV 425
           NWV
Sbjct: 240 NWV 242
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 248 Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 262 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query776
d1hu3a_243 Eukaryotic initiation factor eIF4G {Human (Homo sa 100.0
d1uw4b_248 Regulator of nonsense transcripts 2, UPF2 {Human ( 100.0
d1ug3a1193 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.96
d2nsza1129 Programmed cell death 4, PDCD4 {Mouse (Mus musculu 99.96
d1h2vc1262 CBP80, 80KDa nuclear cap-binding protein {Human (H 99.11
d1rf8b_100 Eukaryotic initiation factor 4f subunit eIF4g, eIF 86.13
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-44  Score=370.63  Aligned_cols=224  Identities=38%  Similarity=0.693  Sum_probs=182.4

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhhCCCCCCCCCCC
Q 004059          195 KDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGG  274 (776)
Q Consensus       195 ~e~l~rkVk~ILNKLTpenFd~l~~qLl~l~I~t~e~Lk~VI~lIFeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~e~~g  274 (776)
                      .+++.|+|++||||||++||+.++.+|+++++++.+.++.+|+.||+||+.||+|+++||+||..|....+.+.  +..+
T Consensus         8 ~~~l~r~v~~lLNKLt~~n~~~i~~ei~~l~~~~~~~l~~~v~~I~~kai~e~~f~~~YA~Lc~~l~~~~~~~~--~~~~   85 (243)
T d1hu3a_           8 TQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMA--DKPG   85 (243)
T ss_dssp             HHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC--------
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHhcCccc--cccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999877653  3335


Q ss_pred             chhhHHHHHHHHHHHHHhhhhchHHHHh-------hcCChHHH----HHHhHHHHHHHHhhhhHHHHHHHHHhcCCCCHH
Q 004059          275 KDITFKRILLNHCQEAFEGADNTRAEIR-------QMTAPEQE----MERMDQERLVKLRTLGNIRLIGELLKQKMVPEK  343 (776)
Q Consensus       275 k~~~FR~~LLnrcQeeFe~~~~~~~ei~-------~~~~~e~E----~E~~e~e~~~Krr~LGnIrFIGELfk~~mL~e~  343 (776)
                      +...||+.||++||++|++.........       ....++++    .|..+.+.+.|++++|+++||||||+.++|+.+
T Consensus        86 ~~~~F~~~Ll~~~q~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~figeLy~~~~v~~~  165 (243)
T d1hu3a_          86 NTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEA  165 (243)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCHH
T ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHccccchHH
Confidence            5688999999999999998754221111       11111110    111122235688999999999999999999999


Q ss_pred             HHHHHHH-hhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhC
Q 004059          344 IVHHIVQ-LLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRAN  422 (776)
Q Consensus       344 Im~~ci~-LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~~k~~~~md~yF~rL~~l~~~~~lssRiRFmL~dvidLR~n  422 (776)
                      +|++|+. |+..     |+|++|||+|.||++||+.|+. +.++..||.||++|+.+.++.++|+||||||+||+|||++
T Consensus       166 ~i~~~l~~Ll~~-----~~e~~ie~l~~lL~~~G~~L~~-~~~~~~~~~~~~~l~~~~~~~~~s~Rirfml~~l~elR~~  239 (243)
T d1hu3a_         166 IMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLC  239 (243)
T ss_dssp             HHHHHHHHHHHS-----CSHHHHHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHc
Confidence            9999999 8875     7899999999999999999986 3456789999999999999999999999999999999999


Q ss_pred             CCCC
Q 004059          423 NWVP  426 (776)
Q Consensus       423 nW~~  426 (776)
                      ||+.
T Consensus       240 ~W~s  243 (243)
T d1hu3a_         240 NWVS  243 (243)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            9984
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rf8b_ a.210.1.1 (B:) Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure