Citrus Sinensis ID: 004098

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770----
MSGSGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSSKCVTENGKTLGKRTLSSANSLGQMRQASLLDHFQSGNRQKRGKRNVGDDVSVSGSVVSPSIVEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDDRVCS
cccccccHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHccccHHHHHcccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHccccEEEEECcccccccccccccccccccEEEEccHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHccccEEEEEcccccccccccccHHHHcHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHHHccccccEEEcccccccccEEEEECcccccHHHHHHcccccEEEEcccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccECcccccccccccccccccccccccHHHHHHHHccccccccEEEEccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccEEEEEcccccccccccEEEEEEccccccHHHHHHHccccccccccccEEEccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccEEEccccccccccccccccccccccccccHHHHHccHHHHHHHHHHHHHccccHHccccccc
**********VIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNG**********************************************************************************************************IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP**************AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREG*D****
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MSGSGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSSKCVTENGKTLGKRTLSSANSLGQMRQASLLDHFQSGNRQKRGKRNVGDDVSVSGSVVSPSIVEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPExxxxxxxxxxxxxxxxxxxxxSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDDRVCS

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
ATP-dependent DNA helicase Q-like SIM Plant specific 3'-5' DNA helicase that may play a role in the repair of DNA.probableQ9FT69

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
3.-.-.-Hydrolases.probable
3.6.-.-Acting on acid anhydrides.probable
3.6.4.-Acting on acid anhydrides; involved in cellular and subcellular movement.probable
3.6.4.12DNA helicase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1OYW, chain A
Confidence level:very confident
Coverage over the Query: 154-394,505-770
View the alignment between query and template
View the model in PyMOL
Template: 2P6R, chain A
Confidence level:very confident
Coverage over the Query: 157-384,459-463,490-620
View the alignment between query and template
View the model in PyMOL
Template: 2YKG, chain A
Confidence level:very confident
Coverage over the Query: 168-415,445-541,562-596,608-621
View the alignment between query and template
View the model in PyMOL
Template: 4A4Z, chain A
Confidence level:confident
Coverage over the Query: 436-441,460,491-669
View the alignment between query and template
View the model in PyMOL
Template: 1IFY, chain A
Confidence level:confident
Coverage over the Query: 8-46
View the alignment between query and template
View the model in PyMOL