Citrus Sinensis ID: 004138

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-
MRSSNTDLNTEVCENAMVLNAYPIGVLSVIDNVNGADEGWSRMEPSVGLEFDTADDAREFYTQYAERVGFKIRIGQLYRSRTDGSVSSRRFVCSKEGFQLNSRTGCSAYIRVQKRDSGKWVLDQMKKDHNHEFDSAGENSLPTVKQRNHSAKKSSVNVSHRPKIKSFADGGSCPSGVINFKRLRSSAGEGECIPEPYAGLEFNSANEAYQFYQAYAEKTGFRVRIGQLFRSKNDGSVTSRRFVCSKEGFQHPSRVGCGAFMRIKRKEFGSWIVDRLQKDHNHDLECQMGANKKTFATSKKFIEDVSGGLDSVDLAEINNGSIIKISQENNIGSAWYRVLFEYFQTRQSEDTGFFHSVEVDNGRCMSVFWADGRSRFSCSQFGDAIIFDTSYRKTNYLIPFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQQAIARIFPRTHHRFSMWQIRAKERENLRSMSNQFVFEYNKCIYQSQSIAQFSTMWTALIEKYGQRDNIWLKEMYEKRESWVPLYLRRSFFAGIPIGKSIESFFGATLTAQTPLREFISRYTQGLERRREEERKEDFNTWNLQAFLQTKEPIEEQCRRLYTRNMFKIFQNELLQSFDYLVTKTNEEATIVRYLVRKCGNEDEKHVVTFSALNVSCSCQMFEFEGMLCGHILKVFNLLNVKEIPSQYILHRWTRNAEYGVLRDTESGFSAQELKALMVWSLRETASKYVESGTGSLEKHKLAYEIMREGGNKLCWQR
cccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHHHHccccEEEEEEEEEEEcccccEEEEEEEEcccccccccccccccEEEEEEEccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHcccccEEEEEEEEEEEcccccEEEEEEEEcccccccccccccccEEEEEEEccccEEEEEEccccccHHHHHccccccccccccccHHccccccccccccccccccHHHHccccccccHHHHHHHHHHHHcccccccEEEEEEEccccEEEEEEcccccccHHHHcccEEEEcccccccccccccEEEEEEEccccccEEEEEEEcccccHHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHccccccccccccccHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEcccEEEEEEEEEEcccccEEEEEEcccccEEEEEccEEEccccccHHHHHHHcccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccc
ccccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHcccEEEEEccEEEccccEEEEEEEEEccccccccccccccEEEEEEEccccEEEEEEEEcccccccccHHHcccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHcccEEEEEccEEEccccEEEEEEEEEccccccccccccccEEEEEEEEcccEEEEEEEEcccccccccccHHcccccHHHHHHHHHHcccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHcccEEEEEEEccccEEEEEEEcccHHHHHHHcccEEEEEcEEccccccccEEEEEEEcccccEEEEEHHHHccccHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEEEccccccEEEEEEccccEEEEEHHEEccccHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcc
mrssntdlnteVCENAMVLNAYPIGVLSvidnvngadegwsrmepsvglefdtaDDAREFYTQYAERVGFKirigqlyrsrtdgsvssrrfvcskegfqlnsrtgcsAYIRVQKRDSGKWVLDQMKkdhnhefdsagenslptvkqrnhsakkssvnvshrpkiksfadggscpsgvinfkrlrssagegecipepyaglefnsaNEAYQFYQAYAEKTGFRVRIGqlfrskndgsvtsrrfvcskegfqhpsrvgcgaFMRIKRKEFGSWIVDRLQKdhnhdlecqmgankktFATSKKFIEDvsggldsvdlaeinngsiikisqenniGSAWYRVLFEYFQtrqsedtgffhsvevdngrcmsvfwadgrsrfscsqfgdaiifdtsyrktnylipfatfvginhhrhpVLLGCALVANESKESFTWLFNTWIRAmfgchpktiiADQDMAIQQAIARIfprthhrfSMWQIRAKERENLRSMSNQFVFEYNKCIYQSQSIAQFSTMWTALIEKYGQRDNIWLKEMYEKRESwvplylrrsffagipigksIESFfgatltaqtpLREFISRYTQGLERRREEERKEDFNTWNLQAFLQTKEPIEEQCRRLYTRNMFKIFQNELLQSFDYLVTKTNEEATIVRYLVRKCGNEDEKHVVTFSALNVSCSCQMFEFEGMLCGHILKVFNllnvkeipsqyiLHRWTrnaeygvlrdtesgfSAQELKALMVWSLRETASKYVesgtgslekHKLAYEIMREGgnklcwqr
MRSSNTDLNTEVCENAMVLNAYPIGVLSVIDNVNGADEGWSRMEPSVGLEFDTADDAREFYTQYAErvgfkirigqlyrsrtdgsvssrrfvcskegfqlnsrtgcsayirvQKRDSGKWVLDQMKKDHNHefdsagenslptvkqrnhsakkssvnvshrpkiksfadggscpsgVINFKRLRSSAGEGECIPEPYAGLEFNSANEAYQFYQAYAEKTGFRVRIGQlfrskndgsvtsrrfvcskegfqhpsrvgcgAFMRIKRKEFGSWIVDRLQKDHNHDLECQMGANKKTFATSKKFIEDVSGGLDSVDLAEINNgsiikisqenniGSAWYRVLFEYFQTRQSEDTGFFHSVEVDNGRCMSVFWADGRSRFSCSQFGDAIIFDTSYRKTNYLIPFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQQAIARIFPRTHHRFSMWQIRAKERENLRSMSNQFVFEYNKCIYQSQSIAQFSTMWTALIEKYGQRDNIWLKEMYEKRESWVPLYLRRSFFAGIPIGKSIESFFGAtltaqtplreFISRYTQGLERrreeerkedfntwnlqaflqtkepiEEQCRRLYTRNMFKIFQNELLQSFDYLVTKTNEEATIVRYLVRKCGNEDEKHVVTFSALNVSCSCQMFEFEGMLCGHILKVFNLLNVKEIPSQYILHRWTRNAEYGVLRDTESGFSAQELKALMVWSLRETASKyvesgtgslekhkLAYEIMREGGNKLCWQR
MRSSNTDLNTEVCENAMVLNAYPIGVLSVIDNVNGADEGWSRMEPSVGLEFDTADDAREFYTQYAERVGFKIRIGQLYRSRTDGSVSSRRFVCSKEGFQLNSRTGCSAYIRVQKRDSGKWVLDQMKKDHNHEFDSAGENSLPTVKQRNHSAKKSSVNVSHRPKIKSFADGGSCPSGVINFKRLRSSAGEGECIPEPYAGLEFNSANEAYQFYQAYAEKTGFRVRIGQLFRSKNDGSVTSRRFVCSKEGFQHPSRVGCGAFMRIKRKEFGSWIVDRLQKDHNHDLECQMGANKKTFATSKKFIEDVSGGLDSVDLAEINNGSIIKISQENNIGSAWYRVLFEYFQTRQSEDTGFFHSVEVDNGRCMSVFWADGRSRFSCSQFGDAIIFDTSYRKTNYLIPFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTiiadqdmaiqqaiaRIFPRTHHRFSMWQIRAKERENLRSMSNQFVFEYNKCIYQSQSIAQFSTMWTALIEKYGQRDNIWLKEMYEKRESWVPLYLRRSFFAGIPIGKSIESFFGATLTAQTPLREFISRYTQGLerrreeerKEDFNTWNLQAFLQTKEPIEEQCRRLYTRNMFKIFQNELLQSFDYLVTKTNEEATIVRYLVRKCGNEDEKHVVTFSALNVSCSCQMFEFEGMLCGHILKVFNLLNVKEIPSQYILHRWTRNAEYGVLRDTESGFSAQELKALMVWSLRETASKYVESGTGSLEKHKLAYEIMREGGNKLCWQR
*********TEVCENAMVLNAYPIGVLSVIDNVNGADEGWSRMEPSVGLEFDTADDAREFYTQYAERVGFKIRIGQLYRSRTDGSVSSRRFVCSKEGFQLNSRTGCSAYIRVQKRDSGKWVL*****************************************************GVINFKRL*****EGECIPEPYAGLEFNSANEAYQFYQAYAEKTGFRVRIGQLFRSKNDGSVTSRRFVCSKEGFQHPSRVGCGAFMRIKRKEFGSWIVDRLQKDHNHDLECQMGANKKTFATSKKFIEDVSGGLDSVDLAEINNGSIIKISQENNIGSAWYRVLFEYFQTRQSEDTGFFHSVEVDNGRCMSVFWADGRSRFSCSQFGDAIIFDTSYRKTNYLIPFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQQAIARIFPRTHHRFSMWQIRAKERENLRSMSNQFVFEYNKCIYQSQSIAQFSTMWTALIEKYGQRDNIWLKEMYEKRESWVPLYLRRSFFAGIPIGKSIESFFGATLTAQTPLREFISRYTQ*************FNTWNLQAFLQTKEPIEEQCRRLYTRNMFKIFQNELLQSFDYLVTKTNEEATIVRYLVRKCGNEDEKHVVTFSALNVSCSCQMFEFEGMLCGHILKVFNLLNVKEIPSQYILHRWTRNAEYGVLRDTESGFSAQELKALMVWSLRETASKYVESGTGSLEKHKLAYEIMREGGNKLC***
******************************************MEPSVGLEFDTADDAREFYTQYAERVGFKIRIGQLYRSRTDGSVSSRRFVCSKEGFQLNSRTGCSAYIRVQKRDSGKWVLDQMKKDHNHEFDSAGENSLPTVKQRNHSAKKSSVNVSHRPKIKSFADGGSCPSGVINFKRLRSSAGEGECIPEPYAGLEFNSANEAYQFYQAYAEKTGFRVRIGQLFRSKNDGSVTSRRFVCSKEGFQHPSRVGCGAFMRIKRKEFGSWIVDRLQKDHNHDLECQMGANKKTFATSKKFIEDVSGGLDSVDLAEINNGSIIKISQENNIGSAWYRVLFEYFQTRQSEDTGFFHSVEVDNGRCMSVFWADGRSRFSCSQFGDAIIFDTSYRKTNYLIPFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQQAIARIFPRTHHRFSMWQIRAKERENLRSMSNQFVFEYNKCIYQSQSIAQFSTMWTALIEKYGQRDNIWLKEMYEKRESWVPLYLRRSFFAGIPIGKSIESFFGATLTAQTPLREFISRYTQGLERRREEERKEDFNTWNLQAFLQTKEPIEEQCRRLYTRNMFKIFQNELLQSFDYLVTKTNEEATIVRYLVRKCGNEDEKHVVTFSALNVSCSCQMFEFEGMLCGHILKVFNLLNVKEIPSQYILHRWTRNAEY*************ELKALMVWSLRETASKYVESGTGSLEKHKLAYEIMREGGNKLCWQ*
********NTEVCENAMVLNAYPIGVLSVIDNVNGADEGWSRMEPSVGLEFDTADDAREFYTQYAERVGFKIRIGQLYR*********RRFVCSKEGFQLNSRTGCSAYIRVQKRDSGKWVLDQMKKDHNHEFDSAGENSLPTV****************RPKIKSFADGGSCPSGVINFKRLRSSAGEGECIPEPYAGLEFNSANEAYQFYQAYAEKTGFRVRIGQLFRSKNDGSVTSRRFVCSKEGFQHPSRVGCGAFMRIKRKEFGSWIVDRLQKDHNHDLECQMGANKKTFATSKKFIEDVSGGLDSVDLAEINNGSIIKISQENNIGSAWYRVLFEYFQTRQSEDTGFFHSVEVDNGRCMSVFWADGRSRFSCSQFGDAIIFDTSYRKTNYLIPFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQQAIARIFPRTHHRFSMWQIRAKERENLRSMSNQFVFEYNKCIYQSQSIAQFSTMWTALIEKYGQRDNIWLKEMYEKRESWVPLYLRRSFFAGIPIGKSIESFFGATLTAQTPLREFISRYTQ************DFNTWNLQAFLQTKEPIEEQCRRLYTRNMFKIFQNELLQSFDYLVTKTNEEATIVRYLVRKCGNEDEKHVVTFSALNVSCSCQMFEFEGMLCGHILKVFNLLNVKEIPSQYILHRWTRNAEYGVLRDTESGFSAQELKALMVWSLRETASKYVESGTGSLEKHKLAYEIMREGGNKLCWQR
****************************************SRMEPSVGLEFDTADDAREFYTQYAERVGFKIRIGQLYRSRTDGSVSSRRFVCSKEGFQLNSRTGCSAYIRVQKRDSGKWVLDQMKKDHNHEFDSAGENSLPTVKQRNH******************************F*******GEGECIPEPYAGLEFNSANEAYQFYQAYAEKTGFRVRIGQLFRSKNDGSVTSRRFVCSKEGFQHPSRVGCGAFMRIKRKEFGSWIVDRLQKDHNHDLECQMGANKKTFATSKKFIEDVSGGLDSVDLAEINNGSIIKISQENNIGSAWYRVLFEYFQTRQSEDTGFFHSVEVDNGRCMSVFWADGRSRFSCSQFGDAIIFDTSYRKTNYLIPFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQQAIARIFPRTHHRFSMWQIRAKERENLRSMSNQFVFEYNKCIYQSQSIAQFSTMWTALIEKYGQRDNIWLKEMYEKRESWVPLYLRRSFFAGIPIGKSIESFFGATLTAQTPLREFISRYTQGLERRREEERKEDFNTWNLQAFLQTKEPIEEQCRRLYTRNMFKIFQNELLQSFDYLVTKTNEEATIVRYLVRKCGNEDEKHVVTFSALNVSCSCQMFEFEGMLCGHILKVFNLLNVKEIPSQYILHRWTRNAEY*************ELKALMVWSLRETASKYVESGTGSLEKHKLAYEIMREGGNKLCWQ*
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MRSSNTDLNTEVCENAMVLNAYPIGVLSVIDNVNGADEGWSRMEPSVGLEFDTADDAREFYTQYAERVGFKIRIGQLYRSRTDGSVSSRRFVCSKEGFQLNSRTGCSAYIRVQKRDSGKWVLDQMKKDHNHEFDSAGENSLPTVKQRNHSAKKSSVNVSHRPKIKSFADGGSCPSGVINFKRLRSSAGEGECIPEPYAGLEFNSANEAYQFYQAYAEKTGFRVRIGQLFRSKNDGSVTSRRFVCSKEGFQHPSRVGCGAFMRIKRKEFGSWIVDRLQKDHNHDLECQMGANKKTFATSKKFIEDVSGGLDSVDLAEINNGSIIKISQENNIGSAWYRVLFEYFQTRQSEDTGFFHSVEVDNGRCMSVFWADGRSRFSCSQFGDAIIFDTSYRKTNYLIPFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQQAIARIFPRTHHRFSMWQIRAKERENLRSMSNQFVFEYNKCIYQSQSIAQFSTMWTALIEKYGQRDNIWLKEMYEKRESWVPLYLRRSFFAGIPIGKSIESFFGATLTAQTPLREFISRYTQGLERRREEERKEDFNTWNLQAFLQTKEPIEEQCRRLYTRNMFKIFQNELLQSFDYLVTKTNEEATIVRYLVRKCGNEDEKHVVTFSALNVSCSCQMFEFEGMLCGHILKVFNLLNVKEIPSQYILHRWTRNAEYGVLRDTESGFSAQELKALMVWSLRETASKYVESGTGSLEKHKLAYEIMREGGNKLCWQR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query771 2.2.26 [Sep-21-2011]
Q9M8J3764 Protein FAR1-RELATED SEQU yes no 0.971 0.980 0.664 0.0
Q3E7I5788 Protein FAR1-RELATED SEQU no no 0.990 0.969 0.637 0.0
Q9SZL8788 Protein FAR1-RELATED SEQU no no 0.736 0.720 0.354 1e-110
Q9ZVC9 851 Protein FAR1-RELATED SEQU no no 0.744 0.674 0.350 3e-98
Q9SWG3 827 Protein FAR-RED IMPAIRED no no 0.727 0.678 0.321 1e-91
Q9SSQ4703 Protein FAR1-RELATED SEQU no no 0.736 0.807 0.315 3e-87
Q9LIE5 839 Protein FAR-RED ELONGATED no no 0.717 0.659 0.311 1e-86
Q9SZL7545 Protein FAR1-RELATED SEQU no no 0.553 0.783 0.372 2e-83
Q9S793725 Protein FAR1-RELATED SEQU no no 0.741 0.788 0.285 2e-76
Q6NQJ7 732 Protein FAR1-RELATED SEQU no no 0.649 0.684 0.320 3e-74
>sp|Q9M8J3|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1 Back     alignment and function desciption
 Score = 1059 bits (2739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/770 (66%), Positives = 627/770 (81%), Gaps = 21/770 (2%)

Query: 17  MVLNAYPIGVLSVIDNVNGADEGWSRMEPSVGLEFDTADDAREFYTQYAERVGFKIRIGQ 76
           MV+  YP+G++   +N    +EG S +EP VGLEFDTA++AR++Y  YA R GFK+R GQ
Sbjct: 1   MVVKTYPLGMVGT-NNGIAENEGDSGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQ 59

Query: 77  LYRSRTDGSVSSRRFVCSKEGFQLNSRTGCSAYIRVQKRDSGKWVLDQMKKDHNHEF--- 133
           LYRSRTDG+VSSRRFVCSKEGFQLNSRTGC A+IRVQ+RD+GKWVLDQ++K+HNH+    
Sbjct: 60  LYRSRTDGTVSSRRFVCSKEGFQLNSRTGCPAFIRVQRRDTGKWVLDQIQKEHNHDLGGH 119

Query: 134 -DSAGENSLPTVKQRNHSAKKSSVNVSHRPKIKSF--ADGG-SCPSGVINFKRLRSSA-G 188
            + A     P+V+QR  +  K  ++V HRPK+K    AD G SCPSGVI+FKR + +   
Sbjct: 120 IEEAQTTPRPSVQQRAPAPTKLGISVPHRPKMKVVDEADKGRSCPSGVISFKRFKGAEDS 179

Query: 189 EGECIP---EPYAGLEFNSANEAYQFYQAYAEKTGFRVRIGQLFRSKNDGSVTSRRFVCS 245
           +G+  P   EPYAGLEFNSANEA QFYQAYAE  GFRVRIGQLFRSK DGS+TSRRFVCS
Sbjct: 180 DGQTQPKATEPYAGLEFNSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCS 239

Query: 246 KEGFQHPSRVGCGAFMRIKRKEFGSWIVDRLQKDHNHDLECQMGANKKTFATSKKFIEDV 305
           KEGFQHPSR+GCGA+MRIKR++ G WIVDRL KDHNHDLE      KK  A  KK  +DV
Sbjct: 240 KEGFQHPSRMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLE----PGKKN-AGMKKITDDV 294

Query: 306 SGGLDSVDLAEINNGS-IIKISQENNIGSAWYRVLFEYFQTRQSEDTGFFHSVEVD-NGR 363
           +GGLDSVDL E+N+ S  I  ++EN IG  WY VL +YFQ++Q+ED GFF+++E+D NG 
Sbjct: 295 TGGLDSVDLIELNDLSNHISSTRENTIGKEWYPVLLDYFQSKQAEDMGFFYAIELDSNGS 354

Query: 364 CMSVFWADGRSRFSCSQFGDAIIFDTSYRKTNYLIPFATFVGINHHRHPVLLGCALVANE 423
           CMS+FWAD RSRF+CSQFGDA++FDTSYRK +Y +PFATF+G NHHR PVLLG ALVA+E
Sbjct: 355 CMSIFWADSRSRFACSQFGDAVVFDTSYRKGDYSVPFATFIGFNHHRQPVLLGGALVADE 414

Query: 424 SKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQQAIARIFPRTHHRFSMWQIRAKERENL 483
           SKE+F+WLF TW+RAM G  P++++ADQD+ IQQA+A++FP THHRFS WQIR+KERENL
Sbjct: 415 SKEAFSWLFQTWLRAMSGRRPRSMVADQDLPIQQAVAQVFPGTHHRFSAWQIRSKERENL 474

Query: 484 RSMSNQFVFEYNKCIYQSQSIAQFSTMWTALIEKYGQRDNIWLKEMYEKRESWVPLYLRR 543
           RS  N+F +EY KC+YQSQ+  +F TMW++L+ KYG RDN+WL+E+YEKRE WVP YLR 
Sbjct: 475 RSFPNEFKYEYEKCLYQSQTTVEFDTMWSSLVNKYGLRDNMWLREIYEKREKWVPAYLRA 534

Query: 544 SFFAGIPIGKSIESFFGATLTAQTPLREFISRYTQGLERRREEERKEDFNTWNLQAFLQT 603
           SFF GI +  + + F+G +L + T LREFISRY QGLE+RREEERKEDFN++NLQ FLQT
Sbjct: 535 SFFGGIHVDGTFDPFYGTSLNSLTSLREFISRYEQGLEQRREEERKEDFNSYNLQPFLQT 594

Query: 604 KEPIEEQCRRLYTRNMFKIFQNELLQSFDYLVTKTNEEATIVRYLVRKCGNEDEKHVVTF 663
           KEP+EEQCRRLYT  +F+IFQ+EL QS++YL  KT EE  I R+LVRKCGNE+EKH VTF
Sbjct: 595 KEPVEEQCRRLYTLTIFRIFQSELAQSYNYLGLKTYEEGAISRFLVRKCGNENEKHAVTF 654

Query: 664 SA--LNVSCSCQMFEFEGMLCGHILKVFNLLNVKEIPSQYILHRWTRNAEYGVLRDTESG 721
           SA  LN SCSCQMFE+EG+LC HILKVFNLL+++E+PS+YILHRWT+NAE+G +RD ESG
Sbjct: 655 SASNLNASCSCQMFEYEGLLCRHILKVFNLLDIRELPSRYILHRWTKNAEFGFVRDVESG 714

Query: 722 FSAQELKALMVWSLRETASKYVESGTGSLEKHKLAYEIMREGGNKLCWQR 771
            ++Q+LKALM+WSLRE ASKY+E GT SLEK+KLAYEIMREGG KLCWQR
Sbjct: 715 VTSQDLKALMIWSLREAASKYIEFGTSSLEKYKLAYEIMREGGKKLCWQR 764
Putative transcription activator involved in regulating light control of development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q3E7I5|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1 Back     alignment and function description
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2 Back     alignment and function description
>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1 Back     alignment and function description
>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1 Back     alignment and function description
>sp|Q9SZL7|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=2 Back     alignment and function description
>sp|Q9S793|FRS8_ARATH Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8 PE=2 SV=2 Back     alignment and function description
>sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query771
224100295750 predicted protein [Populus trichocarpa] 0.958 0.985 0.707 0.0
18397514764 protein FAR1-related sequence 7 [Arabido 0.971 0.980 0.664 0.0
15239616788 protein FAR1-related sequence 12 [Arabid 0.990 0.969 0.637 0.0
356557868762 PREDICTED: protein FAR1-RELATED SEQUENCE 0.979 0.990 0.619 0.0
449432747761 PREDICTED: protein FAR1-RELATED SEQUENCE 0.979 0.992 0.621 0.0
356546454762 PREDICTED: protein FAR1-RELATED SEQUENCE 0.944 0.955 0.640 0.0
225432490823 PREDICTED: protein FAR1-RELATED SEQUENCE 0.964 0.904 0.627 0.0
359491925759 PREDICTED: protein FAR1-RELATED SEQUENCE 0.748 0.760 0.384 1e-117
449453644790 PREDICTED: protein FAR1-RELATED SEQUENCE 0.749 0.731 0.357 1e-113
359476992773 PREDICTED: protein FAR1-RELATED SEQUENCE 0.727 0.725 0.369 1e-113
>gi|224100295|ref|XP_002311819.1| predicted protein [Populus trichocarpa] gi|222851639|gb|EEE89186.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1089 bits (2816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/745 (70%), Positives = 619/745 (83%), Gaps = 6/745 (0%)

Query: 32  NVNGADEGWSRMEPSVGLEFDTADDAREFYTQYAERVGFKIRIGQLYRSRTDGSVSSRRF 91
           N N  D   S +EP  GLEFD+AD AREFY  YA RVGF+ R GQLYRSR+DGSVSSRRF
Sbjct: 7   NFNVEDGRESGVEPHKGLEFDSADVAREFYNVYATRVGFRTRTGQLYRSRSDGSVSSRRF 66

Query: 92  VCSKEGFQLNSRTGCSAYIRVQKRDSGKWVLDQMKKDHNHEFDSAGENSLPTVKQRNHSA 151
           VCSKEGFQL+SRTGC A+IRVQ+RDSGKWV+DQM KDHNHE     E+  P ++Q+    
Sbjct: 67  VCSKEGFQLSSRTGCPAFIRVQRRDSGKWVIDQMHKDHNHELGDVEESHPPVLQQKAPMG 126

Query: 152 KKSSVNVSHRPKIKSFA---DGGSCPSGVINFKRLRSSAGEGECIPEPYAGLEFNSANEA 208
           +KSSV VS R K+K  A   DG  C SG I+ KR+R+ A +G+ + EPYAGL F SA+EA
Sbjct: 127 RKSSVEVSSRKKLKLLAEVDDGQPCSSGSISVKRVRTGA-DGQPLAEPYAGLVFTSADEA 185

Query: 209 YQFYQAYAEKTGFRVRIGQLFRSKNDGSVTSRRFVCSKEGFQHPSRVGCGAFMRIKRKEF 268
           Y FY  YA++ GF+ RIGQLFRSKNDGS+TSRRFVCSKEGFQHPSRVGCGAFMRIKR+E 
Sbjct: 186 YNFYVRYADEAGFKTRIGQLFRSKNDGSITSRRFVCSKEGFQHPSRVGCGAFMRIKRQES 245

Query: 269 GSWIVDRLQKDHNHDLECQMGANKKTFATSKKFIEDVSGGLDSVDLAEINNGSIIKISQE 328
           G+W+VDRLQKDHNHDLE   G +KK+   SKKFI++V+GGLDS+DL EINNG     SQ 
Sbjct: 246 GTWMVDRLQKDHNHDLEPHTGTHKKSSTASKKFIDEVNGGLDSLDLLEINNGVHFNSSQG 305

Query: 329 NNIGSAWYRVLFEYFQTRQSEDTGFFHSVEVDNGRCMSVFWADGRSRFSCSQFGDAIIFD 388
           NNIGS WYR+L +YFQ+RQ+EDTGFF+SVEVDNG CMS+FWADGRSRF+CSQFGD I+ D
Sbjct: 306 NNIGSEWYRLLLDYFQSRQAEDTGFFYSVEVDNGVCMSIFWADGRSRFACSQFGDVIVVD 365

Query: 389 TSYRKTNYLIPFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTII 448
           TSYRKTNYL+PFATFVG+NHH+ PVLLGCAL+ANESKESF WLF TW+RAM GC PK+II
Sbjct: 366 TSYRKTNYLVPFATFVGVNHHKQPVLLGCALIANESKESFIWLFRTWLRAMSGCRPKSII 425

Query: 449 ADQDMAIQQAIARIFPRTHHRFSMWQIRAKERENLRSMSNQFVFEYNKCIYQSQSIAQFS 508
           ADQDMAIQQAIA +FP T HRFSMWQIR KERENLRSMS +F +EY KCIY+SQ+ A+F+
Sbjct: 426 ADQDMAIQQAIAHVFPGTRHRFSMWQIREKERENLRSMSTEFNYEYEKCIYESQTNAEFN 485

Query: 509 TMWTALIEKYGQRDNIWLKEMYEKRESWVPLYLRRSFFAGIPIGKSIESFFGATLTAQTP 568
           TMW AL+ KYG ++N WLKEMYEKRESWVPLYLR +FFAGIP+ +S+ESFFG  L A+TP
Sbjct: 486 TMWNALVNKYGLKENAWLKEMYEKRESWVPLYLRGTFFAGIPMNESMESFFGTFLNAETP 545

Query: 569 LREFISRYTQGLERRREEERKEDFNTWNLQAFLQTKEPIEEQCRRLYTRNMFKIFQNELL 628
           LR+FI+RY QGLE+RREEERKEDFN+ NLQA+LQTKEPIEEQCRRLYT  +F+IFQ ELL
Sbjct: 546 LRDFIARYEQGLEQRREEERKEDFNSSNLQAYLQTKEPIEEQCRRLYTLRVFQIFQKELL 605

Query: 629 QSFDYLVTKTNEEATIVRYLVRKCGNEDEKHVVTFSALN--VSCSCQMFEFEGMLCGHIL 686
           Q ++YL  K+ EE TI RY VR+CGNE EKH+VTFSA N  VSCSCQMFEFEG+LC H+L
Sbjct: 606 QCYNYLGIKSYEEGTISRYSVRRCGNEIEKHMVTFSASNFDVSCSCQMFEFEGVLCRHVL 665

Query: 687 KVFNLLNVKEIPSQYILHRWTRNAEYGVLRDTESGFSAQELKALMVWSLRETASKYVESG 746
           +VF +L+++EIPS Y+LHRWTRNAE+G++ D +SG S QELKALMVWSLRETA KY+ESG
Sbjct: 666 RVFIMLDIREIPSCYLLHRWTRNAEHGIVCDVDSGVSFQELKALMVWSLRETACKYIESG 725

Query: 747 TGSLEKHKLAYEIMREGGNKLCWQR 771
           T SLEK++LA + MREG  K+C  R
Sbjct: 726 TTSLEKYRLACDTMREGAKKICRHR 750

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|18397514|ref|NP_566278.1| protein FAR1-related sequence 7 [Arabidopsis thaliana] gi|75186401|sp|Q9M8J3.1|FRS7_ARATH RecName: Full=Protein FAR1-RELATED SEQUENCE 7 gi|6862929|gb|AAF30318.1|AC018907_18 unknown protein [Arabidopsis thaliana] gi|13430716|gb|AAK25980.1|AF360270_1 unknown protein [Arabidopsis thaliana] gi|23297525|gb|AAN12887.1| unknown protein [Arabidopsis thaliana] gi|332640844|gb|AEE74365.1| protein FAR1-related sequence 7 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15239616|ref|NP_197397.1| protein FAR1-related sequence 12 [Arabidopsis thaliana] gi|122213828|sp|Q3E7I5.1|FRS12_ARATH RecName: Full=Protein FAR1-RELATED SEQUENCE 12 gi|332005250|gb|AED92633.1| protein FAR1-related sequence 12 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356557868|ref|XP_003547232.1| PREDICTED: protein FAR1-RELATED SEQUENCE 7-like [Glycine max] Back     alignment and taxonomy information
>gi|449432747|ref|XP_004134160.1| PREDICTED: protein FAR1-RELATED SEQUENCE 7-like [Cucumis sativus] gi|449521221|ref|XP_004167628.1| PREDICTED: protein FAR1-RELATED SEQUENCE 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356546454|ref|XP_003541641.1| PREDICTED: protein FAR1-RELATED SEQUENCE 7-like [Glycine max] Back     alignment and taxonomy information
>gi|225432490|ref|XP_002277378.1| PREDICTED: protein FAR1-RELATED SEQUENCE 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359491925|ref|XP_002273512.2| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449453644|ref|XP_004144566.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Cucumis sativus] gi|449506920|ref|XP_004162884.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359476992|ref|XP_002263941.2| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query771
TAIR|locus:2082420764 FRS7 "FAR1-related sequence 7" 0.971 0.980 0.641 1.3e-274
TAIR|locus:2144930788 FRS12 "FAR1-related sequence 1 0.830 0.812 0.619 2e-223
TAIR|locus:2121060788 FRS5 "FAR1-related sequence 5" 0.590 0.577 0.348 3.6e-101
TAIR|locus:2059304 851 FRS3 "FAR1-related sequence 3" 0.770 0.698 0.333 7.5e-89
TAIR|locus:2090394 839 FHY3 "far-red elongated hypoco 0.651 0.598 0.306 5.2e-85
TAIR|locus:2129665 827 FAR1 "FAR-RED IMPAIRED RESPONS 0.600 0.559 0.317 5.7e-84
TAIR|locus:2016259725 FRS8 "FAR1-related sequence 8" 0.557 0.593 0.303 1.1e-74
TAIR|locus:2121003545 FRS9 "FAR1-related sequence 9" 0.552 0.781 0.355 1.9e-74
TAIR|locus:2014639 732 FRS4 "FAR1-related sequence 4" 0.479 0.505 0.327 6e-70
TAIR|locus:2035144703 FRS6 "FAR1-related sequence 6" 0.664 0.728 0.312 3.8e-69
TAIR|locus:2082420 FRS7 "FAR1-related sequence 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2640 (934.4 bits), Expect = 1.3e-274, P = 1.3e-274
 Identities = 494/770 (64%), Positives = 606/770 (78%)

Query:    17 MVLNAYPIGVLSVIDNVNGADEGWSRMEPSVGLEFDTADDAREFYTQYAERVGFKIRIGQ 76
             MV+  YP+G++   + +   +EG S +EP VGLEFDTA++AR++Y  YA R GFK+R GQ
Sbjct:     1 MVVKTYPLGMVGTNNGI-AENEGDSGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQ 59

Query:    77 LYRSRTDGSVSSRRFVCSKEGFQLNSRTGCSAYIRVQKRDSGKWVLDQMKKDHNHEF--- 133
             LYRSRTDG+VSSRRFVCSKEGFQLNSRTGC A+IRVQ+RD+GKWVLDQ++K+HNH+    
Sbjct:    60 LYRSRTDGTVSSRRFVCSKEGFQLNSRTGCPAFIRVQRRDTGKWVLDQIQKEHNHDLGGH 119

Query:   134 -DSAGENSLPTVKQRNHSAKKSSVNVSHRPKIKSF--ADGG-SCPSGVINFKRLRSSA-G 188
              + A     P+V+QR  +  K  ++V HRPK+K    AD G SCPSGVI+FKR + +   
Sbjct:   120 IEEAQTTPRPSVQQRAPAPTKLGISVPHRPKMKVVDEADKGRSCPSGVISFKRFKGAEDS 179

Query:   189 EGECIP---EPYAGLEFNSANEAYQFYQAYAEKTGFRVRIGQLFRSKNDGSVTSRRFVCS 245
             +G+  P   EPYAGLEFNSANEA QFYQAYAE  GFRVRIGQLFRSK DGS+TSRRFVCS
Sbjct:   180 DGQTQPKATEPYAGLEFNSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCS 239

Query:   246 KEGFQHPSRVGCGAFMRIKRKEFGSWIVDRLQKDHNHDLECQMGANKKTFATSKKFIEDV 305
             KEGFQHPSR+GCGA+MRIKR++ G WIVDRL KDHNHDLE      KK  A  KK  +DV
Sbjct:   240 KEGFQHPSRMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLE----PGKKN-AGMKKITDDV 294

Query:   306 SGGLDSVDLAEINN-GSIIKISQENNIGSAWYRVLFEYFQTRQSEDTGFFHSVEVD-NGR 363
             +GGLDSVDL E+N+  + I  ++EN IG  WY VL +YFQ++Q+ED GFF+++E+D NG 
Sbjct:   295 TGGLDSVDLIELNDLSNHISSTRENTIGKEWYPVLLDYFQSKQAEDMGFFYAIELDSNGS 354

Query:   364 CMSVFWADGRSRFSCSQFGDAIIFDTSYRKTNYLIPFATFVGINHHRHPVLLGCALVANE 423
             CMS+FWAD RSRF+CSQFGDA++FDTSYRK +Y +PFATF+G NHHR PVLLG ALVA+E
Sbjct:   355 CMSIFWADSRSRFACSQFGDAVVFDTSYRKGDYSVPFATFIGFNHHRQPVLLGGALVADE 414

Query:   424 SKESFTWLFNTWIRAMFGCHPKTXXXXXXXXXXXXXXRIFPRTHHRFSMWQIRAKERENL 483
             SKE+F+WLF TW+RAM G  P++              ++FP THHRFS WQIR+KERENL
Sbjct:   415 SKEAFSWLFQTWLRAMSGRRPRSMVADQDLPIQQAVAQVFPGTHHRFSAWQIRSKERENL 474

Query:   484 RSMSNQFVFEYNKCIYQSQSIAQFSTMWTALIEKYGQRDNIWLKEMYEKRESWVPLYLRR 543
             RS  N+F +EY KC+YQSQ+  +F TMW++L+ KYG RDN+WL+E+YEKRE WVP YLR 
Sbjct:   475 RSFPNEFKYEYEKCLYQSQTTVEFDTMWSSLVNKYGLRDNMWLREIYEKREKWVPAYLRA 534

Query:   544 SFFAGIPIGKSIESFFGATLTAQTPLREFISRYTQGLXXXXXXXXKEDFNTWNLQAFLQT 603
             SFF GI +  + + F+G +L + T LREFISRY QGL        KEDFN++NLQ FLQT
Sbjct:   535 SFFGGIHVDGTFDPFYGTSLNSLTSLREFISRYEQGLEQRREEERKEDFNSYNLQPFLQT 594

Query:   604 KEPIEEQCRRLYTRNMFKIFQNELLQSFDYLVTKTNEEATIVRYLVRKCGNEDEKHVVTF 663
             KEP+EEQCRRLYT  +F+IFQ+EL QS++YL  KT EE  I R+LVRKCGNE+EKH VTF
Sbjct:   595 KEPVEEQCRRLYTLTIFRIFQSELAQSYNYLGLKTYEEGAISRFLVRKCGNENEKHAVTF 654

Query:   664 SA--LNVSCSCQMFEFEGMLCGHILKVFNLLNVKEIPSQYILHRWTRNAEYGVLRDTESG 721
             SA  LN SCSCQMFE+EG+LC HILKVFNLL+++E+PS+YILHRWT+NAE+G +RD ESG
Sbjct:   655 SASNLNASCSCQMFEYEGLLCRHILKVFNLLDIRELPSRYILHRWTKNAEFGFVRDVESG 714

Query:   722 FSAQELKALMVWSLRETASKYVESGTGSLEKHKLAYEIMREGGNKLCWQR 771
              ++Q+LKALM+WSLRE ASKY+E GT SLEK+KLAYEIMREGG KLCWQR
Sbjct:   715 VTSQDLKALMIWSLREAASKYIEFGTSSLEKYKLAYEIMREGGKKLCWQR 764
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009639 "response to red or far red light" evidence=ISS
TAIR|locus:2144930 FRS12 "FAR1-related sequence 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121060 FRS5 "FAR1-related sequence 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059304 FRS3 "FAR1-related sequence 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090394 FHY3 "far-red elongated hypocotyls 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129665 FAR1 "FAR-RED IMPAIRED RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016259 FRS8 "FAR1-related sequence 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121003 FRS9 "FAR1-related sequence 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014639 FRS4 "FAR1-related sequence 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035144 FRS6 "FAR1-related sequence 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M8J3FRS7_ARATHNo assigned EC number0.66490.97140.9803yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query771
PLN03097 846 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY 1e-113
pfam0310190 pfam03101, FAR1, FAR1 DNA-binding domain 5e-27
pfam0310190 pfam03101, FAR1, FAR1 DNA-binding domain 2e-26
pfam1055188 pfam10551, MULE, MULE transposase domain 9e-26
PLN03097846 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY 8e-10
smart0057528 smart00575, ZnF_PMZ, plant mutator transposase zin 4e-05
pfam0443438 pfam04434, SWIM, SWIM zinc finger 0.001
>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
 Score =  363 bits (933), Expect = e-113
 Identities = 198/609 (32%), Positives = 322/609 (52%), Gaps = 51/609 (8%)

Query: 195 EPYAGLEFNSANEAYQFYQAYAEKTGFRVRIGQLFRSKNDGSVTSRRFVCSKEG------ 248
           EP +G+EF S  EAY FYQ YA   GF   I    RSK        +F CS+ G      
Sbjct: 73  EPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYD 132

Query: 249 --FQHP------------------SRVGCGAFMRIKRKEFGSWIVDRLQKDHNHDLECQM 288
             F  P                  ++  C A M +KR+  G W++    K+HNH+L    
Sbjct: 133 KSFNRPRARQTKQDPENGTGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQ 192

Query: 289 GANKKT----FATSKKFIEDVSGGLDSVDLAEINNGSIIKISQENNIG--SAWYRVLFEY 342
             +++T     A +++F E  +       +  + N S     +  N+G  +   ++L ++
Sbjct: 193 AVSEQTRKMYAAMARQFAEYKN-------VVGLKNDSKSSFDKGRNLGLEAGDTKILLDF 245

Query: 343 FQTRQSEDTGFFHSVEV-DNGRCMSVFWADGRSRFSCSQFGDAIIFDTSYRKTNYLIPFA 401
           F   Q+ ++ FF++V++ ++ R  ++FW D +SR     F D + FDT+Y +  Y +P A
Sbjct: 246 FTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLA 305

Query: 402 TFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQQAIAR 461
            FVG+N H   +LLGCAL+++ES  +++WL  TW+RAM G  PK II DQD A++  I+ 
Sbjct: 306 LFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISE 365

Query: 462 IFPRTHHRFSMWQIRAKERENLRSMSNQ---FVFEYNKCIYQSQSIAQFSTMWTALIEKY 518
           +FP  HH F +W I  K  ENL  +  Q   F+ ++ KCIY+S +  +F   W  +++++
Sbjct: 366 VFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRF 425

Query: 519 GQRDNIWLKEMYEKRESWVPLYLRRSFFAGIPI---GKSIESFFGATLTAQTPLREFISR 575
             +++ W++ +YE R+ WVP Y+R +F AG+      +SI +FF   +  +T ++EF+ +
Sbjct: 426 ELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQ 485

Query: 576 YTQGLERRREEERKEDFNTWNLQAFLQTKEPIEEQCRRLYTRNMFKIFQNELLQSFDYLV 635
           Y   L+ R EEE K D +TWN Q  L++  P+E+    +YT  +FK FQ E+L +     
Sbjct: 486 YETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHP 545

Query: 636 TKTNEEATIVRYLVRKCGNEDEKHVVTFS--ALNVSCSCQMFEFEGMLCGHILKVFNLLN 693
              +++ T + + V+      +   VT++   L VSC C++FE++G LC H L V  +  
Sbjct: 546 KMESQDETSITFRVQDFEKNQD-FTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQ 604

Query: 694 VKEIPSQYILHRWTRNAEYGVLRDTESGFSAQELKALMVWSLRETASKYVESGTGSLEKH 753
           +  IPSQYIL RWT++A+   L   ES     + +      L + A K  E  + S E +
Sbjct: 605 LSAIPSQYILKRWTKDAKSRHLLGEES--EQVQSRVQRYNDLCQRALKLSEEASLSQESY 662

Query: 754 KLAYEIMRE 762
            +A+  + E
Sbjct: 663 NIAFRALEE 671

Length = 846
>gnl|CDD|217369 pfam03101, FAR1, FAR1 DNA-binding domain Back     alignment and domain information
>gnl|CDD|217369 pfam03101, FAR1, FAR1 DNA-binding domain Back     alignment and domain information
>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain Back     alignment and domain information
>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information
>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger Back     alignment and domain information
>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 771
PLN03097 846 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis 100.0
PLN03097846 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis 99.95
PF1055193 MULE: MULE transposase domain; InterPro: IPR018289 99.85
PF0310191 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 99.84
PF0310191 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 99.75
PF00872381 Transposase_mut: Transposase, Mutator family; Inte 99.56
COG3328379 Transposase and inactivated derivatives [DNA repli 99.02
PF08731111 AFT: Transcription factor AFT; InterPro: IPR014842 98.81
smart0057528 ZnF_PMZ plant mutator transposase zinc finger. 98.76
PF0310867 DBD_Tnp_Mut: MuDR family transposase; InterPro: IP 98.6
PF0443440 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f 97.98
PF08731111 AFT: Transcription factor AFT; InterPro: IPR014842 97.65
PF0310867 DBD_Tnp_Mut: MuDR family transposase; InterPro: IP 97.07
PF13610140 DDE_Tnp_IS240: DDE domain 93.45
PF01610249 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut 92.99
PF0310660 WRKY: WRKY DNA -binding domain; InterPro: IPR00365 92.86
PF0310660 WRKY: WRKY DNA -binding domain; InterPro: IPR00365 91.79
PF00665120 rve: Integrase core domain; InterPro: IPR001584 In 87.7
PF0450062 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00 85.62
PF06782470 UPF0236: Uncharacterised protein family (UPF0236); 85.24
PF0450062 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00 80.03
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.4e-134  Score=1170.55  Aligned_cols=578  Identities=33%  Similarity=0.630  Sum_probs=531.8

Q ss_pred             CCCCCCCCCCCCCcccCHHHHHHHHHHHHHhcCcEEEEeeeeeccCCCceEEEEEeecCCCccc----------------
Q 004138          188 GEGECIPEPYAGLEFNSANEAYQFYQAYAEKTGFRVRIGQLFRSKNDGSVTSRRFVCSKEGFQH----------------  251 (771)
Q Consensus       188 ~~~~~~~~p~~Gm~F~S~eea~~fy~~YA~~~GF~vr~~~s~r~k~~g~~~~~~~~C~r~G~~~----------------  251 (771)
                      .+++..++|.+||+|+|+|||++||+.||+++||+||+++++|++.+|.+++++|+|+|+|+++                
T Consensus        66 ~~~~~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~  145 (846)
T PLN03097         66 FKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQ  145 (846)
T ss_pred             ccCCCCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCccccccccccccccccc
Confidence            4567889999999999999999999999999999999999999999999999999999999742                


Q ss_pred             ----------CcccCccceeeeeecCcceEEEEEEeccccccccccccccccccccccceeecccCCCcccccccccccc
Q 004138          252 ----------PSRVGCGAFMRIKRKEFGSWIVDRLQKDHNHDLECQMGANKKTFATSKKFIEDVSGGLDSVDLAEINNGS  321 (771)
Q Consensus       252 ----------~~rtGC~a~i~v~~~~~~kW~V~~~~~~HNH~l~~~~~~hr~~~~~~k~~i~~~~g~~~~~~~~~~di~n  321 (771)
                                .+||||||+|+|++.++|+|+|+.|+.+|||||.|+...+.+..... ..+....++..++..++.|..|
T Consensus       146 ~~~~~~~rR~~tRtGC~A~m~Vk~~~~gkW~V~~fv~eHNH~L~p~~~~~~~~r~~~-~~~~~~~~~~~~v~~~~~d~~~  224 (846)
T PLN03097        146 DPENGTGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRKMY-AAMARQFAEYKNVVGLKNDSKS  224 (846)
T ss_pred             CcccccccccccCCCCceEEEEEEcCCCeEEEEEEecCCCCCCCCccccchhhhhhH-HHHHhhhhccccccccchhhcc
Confidence                      27899999999999889999999999999999998765431100000 0111133456677778888888


Q ss_pred             hhHHhhhhccCCchHHHHHHHHHhhcccCCCceEEEEecCC-eeEEEEEeeCcchhhhhhcCcEEEEcccccccCCCCcc
Q 004138          322 IIKISQENNIGSAWYRVLFEYFQTRQSEDTGFFHSVEVDNG-RCMSVFWADGRSRFSCSQFGDAIIFDTSYRKTNYLIPF  400 (771)
Q Consensus       322 ~~~~~r~~~~~~d~~~~ll~~~~~~~~~np~f~y~v~~de~-~~~~lFwa~~~s~~~y~~f~dVv~~D~Ty~tn~y~~pl  400 (771)
                      +....|+..+..+|+++|++||++||.+||+|||++++|++ ++.+|||+|++|+.+|.+|||||+|||||+||+|+|||
T Consensus       225 ~~~~~r~~~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y~~FGDvV~fDTTY~tN~y~~Pf  304 (846)
T PLN03097        225 SFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPL  304 (846)
T ss_pred             hhhHHHhhhcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHHHHHHHhcCCEEEEeceeeccccCcEE
Confidence            88888877786666999999999999999999999999955 55569999999999999999999999999999999999


Q ss_pred             cEEEEEccCCcceeeeeeecccccchhHhHHHHHHHHHhcCCCCeEEecchhHHHHHHHHHhCCCcccccchhhHHHHHH
Q 004138          401 ATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQQAIARIFPRTHHRFSMWQIRAKER  480 (771)
Q Consensus       401 ~~~~Gvn~~~~~~~~g~al~~~E~~es~~W~~~~f~~~~~~~~p~~iitD~~~ai~~Ai~~vfP~a~h~~C~~Hi~~n~~  480 (771)
                      ++|+|||||+|+++||||||.+|+.+||.|||++|+++|+|++|++||||+|.+|++||++|||+|.|++|+|||++|+.
T Consensus       305 a~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~tIiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~  384 (846)
T PLN03097        305 ALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVS  384 (846)
T ss_pred             EEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCCCceEEecCCHHHHHHHHHHCCCceehhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccC---ChhhHHHHHhhhcccccHHHHHHHHHHHHHHhCCCccHHHHHHHHHhhcchhcccccccccCCccc---cc
Q 004138          481 ENLRSM---SNQFVFEYNKCIYQSQSIAQFSTMWTALIEKYGQRDNIWLKEMYEKRESWVPLYLRRSFFAGIPIG---KS  554 (771)
Q Consensus       481 ~~l~~~---~~~~~~~~~~~i~~~~t~~eFe~~w~~l~~~~~l~~~~~L~~ly~~r~~Wa~~y~~~~f~~~~~st---Es  554 (771)
                      ++|+.+   .++|..+|.+||+.+.+++|||..|..|+++|+|++|+||+.||+.|++|||+|+++.|++||++|   ||
T Consensus       385 e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~k~~F~agm~sTqRSES  464 (846)
T PLN03097        385 ENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSES  464 (846)
T ss_pred             HHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHhcccccCCccccccccc
Confidence            999976   689999999999999999999999999999999999999999999999999999999999999999   99


Q ss_pred             hhHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHhHhhhhcccccccccCcchHHHHHHhhccHHHHHHHHHHHHhhccce
Q 004138          555 IESFFGATLTAQTPLREFISRYTQGLERRREEERKEDFNTWNLQAFLQTKEPIEEQCRRLYTRNMFKIFQNELLQSFDYL  634 (771)
Q Consensus       555 ~n~~lk~~~~~~~~l~~f~~~~~~~l~~~~~~e~~~d~~s~~~~p~l~t~~p~e~qa~~iyT~~if~~fq~el~~s~~~~  634 (771)
                      +|++|++|++++++|.+|+++|+++++.++++|+++|+.+.++.|.+++++|||+||+++|||+||++||+|+..+..|.
T Consensus       465 ~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~iF~kFQ~El~~~~~~~  544 (846)
T PLN03097        465 INAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACH  544 (846)
T ss_pred             HHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHHhHHHHHHHHHHHHHHhhheE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCcEEEEEEEEecCCCcceEEEecc--ceeeeecCCcccCCccchhHHHHHhhcCcccCCCccccccccccccc
Q 004138          635 VTKTNEEATIVRYLVRKCGNEDEKHVVTFSA--LNVSCSCQMFEFEGMLCGHILKVFNLLNVKEIPSQYILHRWTRNAEY  712 (771)
Q Consensus       635 ~~~~~~~g~~~~y~V~~~~~~~~~~~V~~~~--~~~~CsC~~fe~~GipC~HiL~Vl~~~~v~~iP~~yil~RWtk~ak~  712 (771)
                      +..+.++|...+|.|..... .+.|+|.+|.  ..++|+|++||+.||||+|||+||.++||.+||++|||+||||+||.
T Consensus       545 ~~~~~~dg~~~~y~V~~~~~-~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~IP~~YILkRWTKdAK~  623 (846)
T PLN03097        545 PKMESQDETSITFRVQDFEK-NQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKS  623 (846)
T ss_pred             EeeeccCCceEEEEEEEecC-CCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccCchhhhhhhchhhhhh
Confidence            98888889999999987543 5689999998  89999999999999999999999999999999999999999999998


Q ss_pred             CccccCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhc
Q 004138          713 GVLRDTESGFSAQELKALMVWSLRETASKYVESGTGSLEKHKLAYEIMREGGNKLCW  769 (771)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~r~~~L~~~~~~~~~~~~~s~e~~~~a~~~L~e~~~k~~~  769 (771)
                      ..+.+....  ...+.+.||+.||+++++++++|+.|.|.|+.|+++|+|+.++++.
T Consensus       624 ~~~~~~~~~--~~~~~~~Ryn~L~r~a~kla~~as~S~E~y~~a~~~L~e~~~~~~~  678 (846)
T PLN03097        624 RHLLGEESE--QVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCIS  678 (846)
T ss_pred             cccCccccc--cccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            776654322  2345578999999999999999999999999999999999999863

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ] Back     alignment and domain information
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants Back     alignment and domain information
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants Back     alignment and domain information
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis Back     alignment and domain information
>smart00575 ZnF_PMZ plant mutator transposase zinc finger Back     alignment and domain information
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ] Back     alignment and domain information
>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis Back     alignment and domain information
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ] Back     alignment and domain information
>PF13610 DDE_Tnp_IS240: DDE domain Back     alignment and domain information
>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif Back     alignment and domain information
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif Back     alignment and domain information
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known Back     alignment and domain information
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function Back     alignment and domain information
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query771
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 57.9 bits (139), Expect = 1e-08
 Identities = 67/475 (14%), Positives = 142/475 (29%), Gaps = 138/475 (29%)

Query: 209 YQF-YQAYAEKTGFRVRIGQLF-----RSKNDGSVTSRRFVCSKEGF----------QHP 252
           Y+F       +      + +++     R  ND  V ++  V   + +          +  
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 253 SRV------GCGAFMRIKRKEFGSWIVDRLQKDHNHDLECQMG--------ANKKTFATS 298
             V      G G     K     +W+   +     + ++C+M          N  +  T 
Sbjct: 151 KNVLIDGVLGSG-----K-----TWVALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 299 KKFIEDVSGGLDSVDLAEINNGSIIKISQENNIGSAWYRVLFEYFQTRQS----EDTGFF 354
            + ++ +   +D    +  ++ S IK+   +    A  R L +            +    
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS--IQAELRRLLKSKPYENCLLVLLN---- 252

Query: 355 HSVEVDNGRCMSVFWADGRSRFSCSQFGDAIIFDTSYRK-TNYLIPFATF-VGINHHRHP 412
               V N +  + F  +   +         I+  T +++ T++L    T  + ++HH   
Sbjct: 253 ----VQNAKAWNAF--NLSCK---------ILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 413 VLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQQAIARIFPRTHHRFSM 472
                 L  +E K     L   ++       P+ ++      +   IA         +  
Sbjct: 298 ------LTPDEVKS----LLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDN 346

Query: 473 W-QIRAKERENLRSMS-NQFVFEYNKCIYQSQSIAQF-----------STMWT------- 512
           W  +   +   +   S N       + ++   S+  F           S +W        
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSDV 404

Query: 513 ----------ALIEKYGQRDNIWL-----------KEMYEKRESWVPLY-LRRSFFAGIP 550
                     +L+EK  +   I +           +  Y    S V  Y + ++F +   
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 551 IGKSIESFFGATLTAQTPLREFISRYTQGLERRREEERKEDFNTWNLQ-AFLQTK 604
           I   ++ +F             I  +   L+     ER   F    L   FL+ K
Sbjct: 465 IPPYLDQYF----------YSHIGHH---LKNIEHPERMTLFRMVFLDFRFLEQK 506
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query771
2ayd_A76 WRKY transcription factor 1; beta strands, zinc fi 93.56
2ayd_A76 WRKY transcription factor 1; beta strands, zinc fi 90.25
1wj2_A78 Probable WRKY transcription factor 4; DNA-binding 89.88
2rpr_A87 Flywch-type zinc finger-containing protein 1; flyw 89.18
1wj2_A78 Probable WRKY transcription factor 4; DNA-binding 86.78
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Back     alignment and structure
Probab=93.56  E-value=0.21  Score=40.50  Aligned_cols=58  Identities=21%  Similarity=0.370  Sum_probs=41.0

Q ss_pred             cCcEEEEeeeeeccCCCceEEEEEeecCCCcccCcccCccceeeeeecC-cceEEEEEEecccccccc
Q 004138          219 TGFRVRIGQLFRSKNDGSVTSRRFVCSKEGFQHPSRVGCGAFMRIKRKE-FGSWIVDRLQKDHNHDLE  285 (771)
Q Consensus       219 ~GF~vr~~~s~r~k~~g~~~~~~~~C~r~G~~~~~rtGC~a~i~v~~~~-~~kW~V~~~~~~HNH~l~  285 (771)
                      -||..|+=--+ .-+....-+..|.|+.        .||||+=.|.+.. ++...++.+..+|||++.
T Consensus        16 DGy~WRKYGQK-~ikgs~~PRsYYrCt~--------~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A           16 DGYRWRKYGQK-SVKGSPYPRSYYRCSS--------PGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             CSSCEEEEEEE-CCTTCSSCEEEEEECS--------TTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             CCchhhhCccc-ccCCCCCceeEeEcCC--------CCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            46777653322 2222334466899975        3799999998876 778888999999999874
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Back     alignment and structure
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query771
d1wj2a_71 WRKY DNA-binding protein 4 {Thale cress (Arabidops 93.51
d1wj2a_71 WRKY DNA-binding protein 4 {Thale cress (Arabidops 90.65
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.51  E-value=0.041  Score=41.98  Aligned_cols=41  Identities=27%  Similarity=0.528  Sum_probs=33.7

Q ss_pred             ceEEEEEeecCCCcccCcccCccceeeeeecC-cceEEEEEEeccccccc
Q 004138          236 SVTSRRFVCSKEGFQHPSRVGCGAFMRIKRKE-FGSWIVDRLQKDHNHDL  284 (771)
Q Consensus       236 ~~~~~~~~C~r~G~~~~~rtGC~a~i~v~~~~-~~kW~V~~~~~~HNH~l  284 (771)
                      ..-+-.|.|+..        ||+|+=.|.+.. ++.-.++.+..+|||++
T Consensus        28 ~~pRsYYrCt~~--------~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~   69 (71)
T d1wj2a_          28 PYPRSYYKCTTP--------GCGVRKHVERAATDPKAVVTTYEGKHNHDL   69 (71)
T ss_dssp             SSCEEEEEEECS--------SCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred             CCceEEEEcccc--------CCCCcceEEEEcCCCCEEEEEEeeEeCCCC
Confidence            344668999863        699999998877 77888888999999976
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure