Citrus Sinensis ID: 004163

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-
MADGEGDIRRLKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQVANSRPANHFVPLSQQSSFWSPLFDEPNTTTTTTTTANYNDLDSIIHRIKREEVSYTDMVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELAESKDFQPRAKYRDEPHTLHGQRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKSLSSRKFFSSTSNIGGKFDPECNSKMRDEVEEISCSPSSVIGDSNAKSSKNSSHFKESELDAEALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAIMIEKFWKFYQNEKESEAAEDSGKRCGIASKRKRSRDDLSLGSHYKESEKIREKEFTTRLSASADYESFSGDDYPQQSLNGDNSSKSSEEYPNSEAIDEASAETIIDSAVKRLKLDMENNRFCYISPRVQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDPICNATEDSADDHIGLSNLNT
cccccccEEEEEEccccccccccccccEEEcccccccHHHHHHcccccHHHHcccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHcccHHHHHcccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHccccccccccccccccccccccccc
cccccccEEEEEEEEccccccccccccEEEEcccccEEEcEEEcccccccccccccccccEEEccccccccccccccccccccccccccccHHccccccccccccccccccHHHHHHHEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEHccccEEHEEHHccccccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHHccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHEcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccccccccccccccHcccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHEEcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccEEEcccccccccccEEEEEEEcccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHccccccEcccccccccccccccccc
madgegdirrlkckkcdnvgfecaydgfyycthcnalddeivetgvadedfmatgagtgtALYQASHarqvansrpanhfvplsqqssfwsplfdepnttttttttanyndldSIIHRIKreevsytdmvgptepqdfgssgpvkadyedyHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLAStgllsqgwadeAIVQSESQelaeskdfqprakyrdephtlhgQRAVMIWYKLLRQkiplssslAISFLACHVvreailptdivkwsiegkipyFAAFVEIEKRFgqtsvacslspsfmfrpsksvpsqkLESFAASIAESiglhlppvnFYALASRYLKQLCLPLGKILPRALKiqewsmppdlwlstnecrfptrVCVMSILIVSIRILYNINGfgawekslssrkffsstsniggkfdpecnskmrdeveeiscspssvigdsnakssknsshfkesELDAEALLYDLEARYndihdsvtyeyskdlptYLKYCKDVVfaglepphddpeEAIMIEKFWKFYQNEkeseaaedsgkrcgiaskrkrsrddlslgshykeseKIREKEFTTrlsasadyesfsgddypqqslngdnssksseeypnseaideASAETIIDSAVKRLKLdmennrfcyisprvqikRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDhclhltppsvtcrfcsdpvelaagdpicnatedsaddhiglsnlnt
madgegdirrlkckkcdnVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQVANSRPANHFVPLSQQSSFWSPLFDEPNTtttttttanyndldsIIHRIKREEVSYTDMVGptepqdfgssgpvKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESqelaeskdfqprakyrdephtlhGQRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKSLSSRKFFsstsniggkfdpECNSKMRDEVEEIscspssvigdsnakssknsshfkeSELDAEALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAIMIEKFWKFYQNEKeseaaedsgkrcgiaskrkrsrddlslgshykesekirekEFTTRLSASADYESFSGDDYPQQSLNGDNSSKSSEEYPNSEAIDEASAETIIDSAVKRLKldmennrfcyisprvqikrLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDPICNatedsaddhiglsnlnt
MADGEGDIRRLKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQVANSRPANHFVPLSQQSSFWSPLFDEPNttttttttANYNDLDSIIHRIKREEVSYTDMVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELAESKDFQPRAKYRDEPHTLHGQRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEkslssrkffsstsNIGGKFDPECNSKMRDEVEEISCSPSSVIGDSNAKSSKNSSHFKeseldaeallydleaRYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAIMIEKFWKFYQNEKESEAAEDSGKRCGIASKRKRSRDDLSLGSHYKESEKIREKEFTTRLSASADYESFSGDDYPQQSLNGDNSSKSSEEYPNSEAIDEASAETIIDSAVKRLKLDMENNRFCYISPRVQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDPICNATEDSADDHIGLSNLNT
********RRLKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQA**************************************************IH***************************KADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIV*************************LHGQRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFM**************FAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKSL************************************************************EALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEP*****EEAIMIEKFWKFYQ*********************************************************************************************IIDSAVKRLKLDMENNRFCYISPRVQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDPICN*****************
******D***LKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTAL*****************FVPLSQQSSFWSPLFDE**********ANYNDLDSIIHRIKREEVS*************************YHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLAST******************************************************KIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEK*************IGGKFDPECNSKMRDEVEEISCSPSSVI*****KS**NSSHFKESELDAEALLYDLEARYNDIHDSV***Y*KDLPTYLKYCKDVVFAGLE********AIMIEKFW******************************************************ASADYE*******************************************KRLKLDMENNRFCYISPRVQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDP*************GLSNL**
********RRLKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQVANSRPANHFVPLSQQSSFWSPLFDEPNTTTTTTTTANYNDLDSIIHRIKREEVSYTDMVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELAESKDFQPRAKYRDEPHTLHGQRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKSLSSRKFFSSTSNIGGKFDPECNSKMRDEVEEISCSPSSVI****************SELDAEALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAIMIEKFWKFYQNE************CGIASKRKRSRDDLSLGSHYKESEKIREKEFTTRLSASADYESFSGDDYPQQS******************IDEASAETIIDSAVKRLKLDMENNRFCYISPRVQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDPICNATEDSADDHIGLSNLNT
*****GDIRRLKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQVANSRPANHFVPLSQQSSFWSPLFDE*NTTTTTTTTANYNDLDSIIHRIKREEVSYTDMVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSES********************TLHGQRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKSLSSRK***************************************************SELDAEALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAIMIEKFWKFYQNEKE****************************************************************************************TIIDSAVKRLKLDMENNRFCYISPRVQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDPICNAT***AD*HIGL*****
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MADGEGDIRRLKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQVANSRPANHFVPLSQQSSFWSPLFDEPNTTTTTTTTANYNDLDSIIHRIKREEVSYTDMVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELAESKDFQPRAKYRDEPHTLHGQRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKSLSSRKFFSSTSNIGGKFDPECNSKMRDEVEEISCSPSSVIGDSNAKSSKNSSHFKESELDAEALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAIMIEKFWKFYQNEKESEAAEDSGKRCGIASKRKRSRDDLSLGSHYKESEKIREKEFTTRLSASADYESFSGDDYPQQSLNGDNSSKSSEEYPNSEAIDEASAETIIDSAVKRLKLDMENNRFCYISPRVQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDPICNATEDSADDHIGLSNLNT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query771 2.2.26 [Sep-21-2011]
Q5XVF0666 TATA box-binding protein- yes no 0.837 0.969 0.415 1e-148
Q5W770634 TATA box-binding protein- yes no 0.670 0.815 0.367 1e-105
B8AX23634 TATA box-binding protein- N/A no 0.670 0.815 0.367 1e-105
>sp|Q5XVF0|MEE12_ARATH TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Arabidopsis thaliana GN=MEE12 PE=1 SV=1 Back     alignment and function desciption
 Score =  524 bits (1350), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 307/738 (41%), Positives = 423/738 (57%), Gaps = 92/738 (12%)

Query: 13  CKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQ-- 70
           C +C+N  F+   DG+YYC  C    + +++TGV D D +  G GT  ALY   H R   
Sbjct: 3   CTECENDAFDEEDDGYYYCQRCGVQVENLIQTGVDDGDLIGEGGGTQGALYNPKHRRTEP 62

Query: 71  --VANSRPANHFVPLSQQSSFWSPLFDEPNTTTTTTTTANYNDLDSIIHRIKREEVSYTD 128
             +  S+P   F   + + S +   F+  N                +   +KR   SY D
Sbjct: 63  QPITPSQP--RFTDDTSRYSQFKSQFESENGNK------------ELPREVKRAPDSYVD 108

Query: 129 MVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVA 188
              PTEP DF +       YE+Y+ E R +YV    +MI  QC+ALVDKFNV PLI G+ 
Sbjct: 109 K-EPTEPVDFAAE---TLSYENYYDEARDRYVKAFLMMITYQCDALVDKFNVTPLIIGLV 164

Query: 189 ASIWFRFLASTGLLSQGWADEAIVQSESQ-ELAESKDFQPRAKYRDEPHTLHGQRAVMIW 247
             I  R++A +G+  + WA+ AI  SE Q E  E KD +   +++ EP  + G+RAV IW
Sbjct: 165 GPISLRYVALSGVYHKDWANNAIRDSEHQSEDGEVKDAKRLKRHKAEPRNIDGKRAVTIW 224

Query: 248 YKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSV 307
           + +L++ +PLSSSL ISFLACH     +LPTDIV+W+ EGK+PY + F++I ++ G+ S 
Sbjct: 225 FGILKKTMPLSSSLVISFLACHQAGAPVLPTDIVRWAREGKLPYLSCFLDIREQMGERSA 284

Query: 308 ACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKIL 367
           AC +  S M RP + + +Q LE+ A+ IA++IGL LPPVNFY +AS Y+KQL +P  KIL
Sbjct: 285 ACPVKVSIMARPFQVISAQMLEARASVIADTIGLPLPPVNFYGIASNYIKQLSIPEDKIL 344

Query: 368 PRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKSLSSRKFF 427
             A  IQ WS+PP+L+LSTNE + P+RVCVMSILIV+IR+LYNING G WE+SL     F
Sbjct: 345 DLARLIQNWSLPPELYLSTNEQKLPSRVCVMSILIVAIRMLYNINGLGVWERSLG----F 400

Query: 428 SSTSNIGGKFDPECNSKMRDEVEEISCSPSSVIGDSNAKSSKNSSHFKESELDAEALLYD 487
            + S+                            GDS   S       K +E D + LL +
Sbjct: 401 VNASD----------------------------GDSETNSGTAE---KATEFDTQELLKN 429

Query: 488 LEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAI-MIEKFWKFYQNEK 546
           LEA+Y+++  + T E  KDL +YL   K+  FAGLE   D P++   +++  W  Y  ++
Sbjct: 430 LEAKYHEVA-AETLESEKDLVSYLSLGKNEFFAGLE--EDSPDDTYRIVDNLWNGYPKDE 486

Query: 547 ESEAAEDSGKRCGIASKRKRSRDDLSLGSHYKESEKIREKEFTTRLSASADYES-FSGDD 605
           + E             KR R  DD                     L+  + Y+S FS  +
Sbjct: 487 DIEC----------LPKRGRDWDD------------------DVSLNQLSLYDSRFSDGN 518

Query: 606 YPQQSLNGDNSSKS-SEEYPNSEAIDEASAETIIDSAVKRLKLDMENNRFCYISPRVQIK 664
            P  S +  N S S   +  +SE  + +S E + + A+KRL  DM ++ FCYI PRV++K
Sbjct: 519 NPCSSSSRRNESVSIGLDLSSSEHRESSSPEKLKEIAIKRLITDMGDDLFCYIPPRVKVK 578

Query: 665 RLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRI 724
           RLDYLQYVRK ++GAL YAAHADYYILLR CA +A++D+R+MH  VLSFERRLAW+EKRI
Sbjct: 579 RLDYLQYVRKKEDGALIYAAHADYYILLRVCAKVAEIDVRNMHRGVLSFERRLAWIEKRI 638

Query: 725 DHCLHLTPPSVTCRFCSD 742
           D  LHLT P +TC+ C D
Sbjct: 639 DQVLHLTRPLMTCKHCCD 656
Component of RNA polymerase I core factor complex that acts as a GTF2B/TFIIB-like factor and plays a key role in multiple steps during trancription initiation such as preinitiation complex (PIC) assembly and postpolymerase recruitment events in polymerase I (Pol I) transcription. Binds rDNA promoters and plays a role in Pol I recruitment (By similarity). Required for micropylar pollen tube guidance, but has no effect on ovule development and gametophytic cell fate specification.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5W770|TAF1B_ORYSJ TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Oryza sativa subsp. japonica GN=Os05g0352700 PE=3 SV=2 Back     alignment and function description
>sp|B8AX23|TAF1B_ORYSI TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Oryza sativa subsp. indica GN=OsI_19584 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query771
255562854751 conserved hypothetical protein [Ricinus 0.958 0.984 0.562 0.0
225425686722 PREDICTED: uncharacterized protein LOC10 0.913 0.975 0.535 0.0
147780094722 hypothetical protein VITISV_027088 [Viti 0.915 0.977 0.528 0.0
356541066719 PREDICTED: uncharacterized protein LOC10 0.920 0.987 0.485 0.0
296086368713 unnamed protein product [Vitis vinifera] 0.791 0.855 0.492 0.0
449518998735 PREDICTED: TATA box-binding protein-asso 0.906 0.951 0.486 0.0
449470354735 PREDICTED: TATA box-binding protein-asso 0.891 0.934 0.477 0.0
114053441664 hypothetical protein SDM1_2t00007 [Solan 0.840 0.975 0.437 1e-156
357473537653 hypothetical protein MTR_4g071660 [Medic 0.809 0.955 0.439 1e-155
22325438666 maternal effect embryo arrest 12 protein 0.837 0.969 0.415 1e-146
>gi|255562854|ref|XP_002522432.1| conserved hypothetical protein [Ricinus communis] gi|223538317|gb|EEF39924.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/774 (56%), Positives = 537/774 (69%), Gaps = 35/774 (4%)

Query: 4   GEGDIRRLKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALY 63
           GEG+ +R  C++C +VG E + DGFYYC  C A  D+I+ TGVADEDF+      G ALY
Sbjct: 5   GEGETKRWACRRCGHVGLEES-DGFYYCQECGAQADDIILTGVADEDFIEKDGEGGGALY 63

Query: 64  QASHARQVANSRPANHFVPLSQQSSFWSPLFDEPNTTTTTTTTANYNDLDSIIHRIKREE 123
            A   R    +R      P SQ    ++   ++ N TTTTT    Y+++     +IK+EE
Sbjct: 64  SARFTRYSQPTRTI-QTNPSSQAWFRYTQEEEDINFTTTTTLNGTYSNI-----KIKKEE 117

Query: 124 V----SYTDMVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFN 179
                 Y D +GP EP+DFG        YEDY+ EVR++YVMGMQ MIQLQCE+LV+KFN
Sbjct: 118 RFDDDEYLDGLGPVEPEDFGGKS---LSYEDYYNEVRIRYVMGMQWMIQLQCESLVEKFN 174

Query: 180 VCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELAESKDFQPRAKYRDEPHTLH 239
           V PLICGVA ++W RFL +TG+    WAD+ I++SESQ   E +D++PR+ +R+EPH  +
Sbjct: 175 VSPLICGVAGNVWLRFLVATGVFKDNWADDVILESESQVQGEPEDWKPRSSHRNEPHNAY 234

Query: 240 GQRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIE 299
           GQRAVM+W+K LR+ IPLSSSLAISFLACHV REAILPTDIV+WSIEGK+PYFAA VEIE
Sbjct: 235 GQRAVMVWFKYLRKTIPLSSSLAISFLACHVAREAILPTDIVRWSIEGKLPYFAAHVEIE 294

Query: 300 KRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQL 359
           KRF  +S AC +S S MFRPS++VP+QKLES AA+ AESIGLHLPPVNFY +ASRYLK L
Sbjct: 295 KRFEHSSPACPISSSLMFRPSQAVPAQKLESMAAAFAESIGLHLPPVNFYEIASRYLKNL 354

Query: 360 CLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEK 419
            LP+ KILP A +I EWSMPPDLWLSTNE R PTRV VMSILIV+IRILYN+NGFGAWE+
Sbjct: 355 ALPVEKILPHACRIYEWSMPPDLWLSTNELRLPTRVTVMSILIVAIRILYNLNGFGAWER 414

Query: 420 SLSSRKFFSSTSNIGGKFDPECNSKMRDEVEEISCSPSSVIGDSNAKSSKNSSHFKESEL 479
           SLSS     S S+   + D  C S M+ + E  + SP   +  S  K  +N SH +  EL
Sbjct: 415 SLSSLNCSPSNSHPASRLDSMCRSVMQGDAE--TGSPFYSLDGSAEKFLRNPSHMQMPEL 472

Query: 480 DAEALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPH-DDPEEAIMIEKF 538
           D+  LL+ LE +YN I D+  YE++KDLP+YL+YCKDVVFAG  P H DD EE  ++EK 
Sbjct: 473 DSAELLHHLEVKYNFIADA--YEFTKDLPSYLQYCKDVVFAGAGPSHMDDLEEEELMEKL 530

Query: 539 WKFYQNEKESE-AAEDSGKRCGIASKRKRSR-DDLSLGSHYKESEKIREKEFTTRLSASA 596
           W FYQNEK+SE A E   +     S +KRSR DD S+  +  E EKI+E+      S SA
Sbjct: 531 WDFYQNEKDSELAKEPRTQSSSRLSNQKRSRNDDGSVFVNLSEKEKIKEEWHD---SPSA 587

Query: 597 DYESFSGDDYPQQSLNGDNSSKSSEEYPNSEAIDEASAETIIDSAVKRLKLDMENNRFCY 656
           D  S + D+   QS +  + S +S E  N E  ++ S +T+   A++RLKLDME NRFCY
Sbjct: 588 DISSHNADNSSHQSFDNGHFSNNSLEDQNVEHKEKDSEKTLEGRAIRRLKLDMEENRFCY 647

Query: 657 ISPRVQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERR 716
           I PRV +KR DYL YVRK DEGA TY AHADYYILLRACA +AQVDIR MH+ VLSFERR
Sbjct: 648 IPPRVNLKRFDYLHYVRKKDEGAFTYVAHADYYILLRACARVAQVDIRIMHIGVLSFERR 707

Query: 717 LAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDPICNATEDSADDHIGLSNLN 770
           LAWLEKRID+CLHL+PP++TC FC D  +            +S DD IGLS LN
Sbjct: 708 LAWLEKRIDYCLHLSPPTITCEFCRDMPD-----------HNSNDDVIGLSKLN 750

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225425686|ref|XP_002269865.1| PREDICTED: uncharacterized protein LOC100241425 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147780094|emb|CAN73288.1| hypothetical protein VITISV_027088 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356541066|ref|XP_003539004.1| PREDICTED: uncharacterized protein LOC100789168 [Glycine max] Back     alignment and taxonomy information
>gi|296086368|emb|CBI31957.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449518998|ref|XP_004166522.1| PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449470354|ref|XP_004152882.1| PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|114053441|gb|AAK91899.2|AC091627_12 hypothetical protein SDM1_2t00007 [Solanum demissum] Back     alignment and taxonomy information
>gi|357473537|ref|XP_003607053.1| hypothetical protein MTR_4g071660 [Medicago truncatula] gi|355508108|gb|AES89250.1| hypothetical protein MTR_4g071660 [Medicago truncatula] Back     alignment and taxonomy information
>gi|22325438|ref|NP_671769.1| maternal effect embryo arrest 12 protein [Arabidopsis thaliana] gi|75111159|sp|Q5XVF0.1|MEE12_ARATH RecName: Full=TATA box-binding protein-associated factor RNA polymerase I subunit B; AltName: Full=Central cell guidance protein; AltName: Full=Protein MATERNAL EFFECT EMBRYO ARREST 12; AltName: Full=TATA box-binding protein-associated factor 1B; Short=TBP-associated factor 1B gi|52354243|gb|AAU44442.1| hypothetical protein AT2G02955 [Arabidopsis thaliana] gi|330250550|gb|AEC05644.1| maternal effect embryo arrest 12 protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query771
TAIR|locus:504955973666 MEE12 "maternal effect embryo 0.508 0.588 0.449 1.6e-130
UNIPROTKB|Q5W770634 Os05g0352700 "TATA box-binding 0.424 0.515 0.401 7.2e-105
TAIR|locus:504955973 MEE12 "maternal effect embryo arrest 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 879 (314.5 bits), Expect = 1.6e-130, Sum P(2) = 1.6e-130
 Identities = 183/407 (44%), Positives = 248/407 (60%)

Query:    13 CKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQVA 72
             C +C+N  F+   DG+YYC  C    + +++TGV D D +  G GT  ALY   H R   
Sbjct:     3 CTECENDAFDEEDDGYYYCQRCGVQVENLIQTGVDDGDLIGEGGGTQGALYNPKHRR--T 60

Query:    73 NSRPANHFVPLSQQSSFWSPLFDEPNXXXXXXXXANYNDLDSIIHRIKREEVSYTDMVGP 132
               +P     P   Q  F     D            + N    +   +KR   SY D   P
Sbjct:    61 EPQP---ITP--SQPRFTD---DTSRYSQFKSQFESENGNKELPREVKRAPDSYVDKE-P 111

Query:   133 TEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIW 192
             TEP DF +       YE+Y+ E R +YV    +MI  QC+ALVDKFNV PLI G+   I 
Sbjct:   112 TEPVDFAAE---TLSYENYYDEARDRYVKAFLMMITYQCDALVDKFNVTPLIIGLVGPIS 168

Query:   193 FRFLASTGLLSQGWADEAIVQSESQ-ELAESKDFQPRAKYRDEPHTLHGQRAVMIWYKLL 251
              R++A +G+  + WA+ AI  SE Q E  E KD +   +++ EP  + G+RAV IW+ +L
Sbjct:   169 LRYVALSGVYHKDWANNAIRDSEHQSEDGEVKDAKRLKRHKAEPRNIDGKRAVTIWFGIL 228

Query:   252 RQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSL 311
             ++ +PLSSSL ISFLACH     +LPTDIV+W+ EGK+PY + F++I ++ G+ S AC +
Sbjct:   229 KKTMPLSSSLVISFLACHQAGAPVLPTDIVRWAREGKLPYLSCFLDIREQMGERSAACPV 288

Query:   312 SPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRAL 371
               S M RP + + +Q LE+ A+ IA++IGL LPPVNFY +AS Y+KQL +P  KIL  A 
Sbjct:   289 KVSIMARPFQVISAQMLEARASVIADTIGLPLPPVNFYGIASNYIKQLSIPEDKILDLAR 348

Query:   372 KIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWE 418
              IQ WS+PP+L+LSTNE + P+RVCVMSILIV+IR+LYNING G WE
Sbjct:   349 LIQNWSLPPELYLSTNEQKLPSRVCVMSILIVAIRMLYNINGLGVWE 395
GO:0005634 "nucleus" evidence=ISM
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
UNIPROTKB|Q5W770 Os05g0352700 "TATA box-binding protein-associated factor RNA polymerase I subunit B" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5XVF0MEE12_ARATHNo assigned EC number0.41590.83780.9699yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 771
PRK00423310 tfb transcription initiation factor IIB; Reviewed 98.65
PF1178136 RRN7: RNA polymerase I-specific transcription init 98.57
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 98.12
PF0827143 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013 95.64
KOG1598521 consensus Transcription initiation factor TFIIIB, 94.43
smart0077837 Prim_Zn_Ribbon Zinc-binding domain of primase-heli 92.19
PF1276046 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int 90.62
PF0827430 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01 90.51
PRK00420112 hypothetical protein; Validated 90.3
PF0827340 Prim_Zn_Ribbon: Zinc-binding domain of primase-hel 89.87
KOG1597308 consensus Transcription initiation factor TFIIB [T 88.9
PF1324826 zf-ribbon_3: zinc-ribbon domain 88.69
PRK0043250 30S ribosomal protein S27ae; Validated 85.59
COG2824112 PhnA Uncharacterized Zn-ribbon-containing protein 84.26
smart0066152 RPOL9 RNA polymerase subunit 9. 83.23
PF09538108 FYDLN_acid: Protein of unknown function (FYDLN_aci 81.95
PF0879233 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: I 80.01
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information 
Probab=98.65  E-value=4.6e-06  Score=90.57  Aligned_cols=146  Identities=15%  Similarity=0.207  Sum_probs=103.5

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcCCCCcccccccccccccccccCCCCcccCCCCCCccccchhhHHHHHH
Q 004163          170 QCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELAESKDFQPRAKYRDEPHTLHGQRAVMIWYK  249 (771)
Q Consensus       170 Q~~aLV~~~G~ppELe~VVrdLWlRyL~~s~v~~~~~a~~~l~~Se~~sE~e~~ssq~~as~~~e~~~~~~kRk~~~wpr  249 (771)
                      .+..+...+|+|+.+.+....|-.++....- +                                    .|++..     
T Consensus       128 ~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~~-~------------------------------------rgrs~~-----  165 (310)
T PRK00423        128 ELDRIASQLGLPRSVREEAAVIYRKAVEKGL-I------------------------------------RGRSIE-----  165 (310)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-c------------------------------------cCCCHH-----
Confidence            3566777889999999888888766654311 0                                    011111     


Q ss_pred             HHhhcCCccchHHHHHHHHHHhhcccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHH
Q 004163          250 LLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLE  329 (771)
Q Consensus       250 llr~~Lp~~~TLAI~YLAcl~LR~PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~  329 (771)
                       .       ...|.+|+||..-+.|.++-||.....   +                                  +.+.|.
T Consensus       166 -~-------i~AAclYiACR~~~~prtl~eI~~~~~---v----------------------------------~~k~i~  200 (310)
T PRK00423        166 -G-------VVAAALYAACRRCKVPRTLDEIAEVSR---V----------------------------------SRKEIG  200 (310)
T ss_pred             -H-------HHHHHHHHHHHHcCCCcCHHHHHHHhC---C----------------------------------CHHHHH
Confidence             1       567899999999999999999976532   0                                  113455


Q ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCChhhhHHHHHHhhhccCCccCccCCCCCCCChHHHHHHHHHHHHHHh
Q 004163          330 SFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRIL  408 (771)
Q Consensus       330 ~la~~la~~~gL~fPpiN~~lLl~Ryl~eL~LP~E~iy~~v~RL~~fs~p~~l~~s~~~~~~Pe~V~LmA~IIVAlKLL  408 (771)
                      +.-..+.+.+++.+|+++..-++.||+..|+||.+ +...+.+|++......+    ...+-|. ..++|+|.+|.++.
T Consensus       201 ~~~~~l~k~L~~~~~~~~p~~~i~r~~~~L~L~~~-v~~~A~~i~~~a~~~~l----~~Gr~P~-sIAAAaIYlA~~~~  273 (310)
T PRK00423        201 RCYRFLLRELNLKLPPTDPIDYVPRFASELGLSGE-VQKKAIEILQKAKEKGL----TSGKGPT-GLAAAAIYIASLLL  273 (310)
T ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHhcCc----ccCCCHH-HHHHHHHHHHHHHh
Confidence            55666777788889999999999999999999999 77888888863322211    1225577 88888888888874

>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase Back     alignment and domain information
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc Back     alignment and domain information
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues Back     alignment and domain information
>PRK00420 hypothetical protein; Validated Back     alignment and domain information
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4 Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF13248 zf-ribbon_3: zinc-ribbon domain Back     alignment and domain information
>PRK00432 30S ribosomal protein S27ae; Validated Back     alignment and domain information
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism] Back     alignment and domain information
>smart00661 RPOL9 RNA polymerase subunit 9 Back     alignment and domain information
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues Back     alignment and domain information
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query771
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.1 bits (142), Expect = 5e-09
 Identities = 94/610 (15%), Positives = 159/610 (26%), Gaps = 193/610 (31%)

Query: 199 TGLLSQGWADEAIVQSESQELAESKDFQ-----PRAKYRDE--------PHTLHGQRAVM 245
           TG     + D  I+        ++ D +     P++    E           + G    +
Sbjct: 11  TGEHQYQYKD--ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL-RL 67

Query: 246 IWYKLLRQKIPLSSSLAISFLACHVVREAILPTD----IVKWSIEGKIPYFAAFVEIEKR 301
            W   L  K      +   F+      E +L  +    +     E + P     + IE+R
Sbjct: 68  FW--TLLSK---QEEMVQKFV------EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 302 FGQTSVACSLSPSFMFRPSKSVPSQKLESFAASI--AESIGLH---------LPPVNFYA 350
               +     +   + R     P  KL      +  A+++ +          +       
Sbjct: 117 DRLYNDNQVFAKYNVSRLQ---PYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-----L 168

Query: 351 LASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVM------------ 398
                 K  C    KI                WL+   C  P  V  M            
Sbjct: 169 DVCLSYKVQCKMDFKIF---------------WLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 399 -SILIVSIRILYNINGFGAWEKSLSSRKFFS---------STSNIGGKFDPECNSKM--- 445
            S    S  I   I+   A  + L   K +            +     F+  C  K+   
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--KILLT 271

Query: 446 -RDEVEEISCSPSSVIGDSNAKSSKNSSHFKESELDAEALLYDLEARYNDIHDSVTYEYS 504
            R            V    +  S+  ++H                   +    ++T +  
Sbjct: 272 TRF---------KQVT---DFLSAATTTHI----------------SLDHHSMTLTPDEV 303

Query: 505 KDLPTYLKYCKDVVFAGLEPPHDDPEEAI--------MIE----------KFWKFYQNEK 546
           K L   LKY           P D P E +        +I             WK    +K
Sbjct: 304 KSL--LLKYLD-------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 547 ESEAAEDSGKRCGIASKRKRSRDDLSLGSHYKESEKIREKEFTTRLSASADYESFSGDDY 606
            +   E S      A  RK   D LS+   +  S  I     +         +       
Sbjct: 355 LTTIIESSLNVLEPAEYRKMF-DRLSV---FPPSAHIPTILLSLIWFDVIKSD------- 403

Query: 607 PQQSLNGDNSSKSSEEYPNSEAIDEASAETIIDSAVKRLKLDMENNRFCYISPRVQIKRL 666
               +N  +     E+ P    I        I S    LK+ +EN         +    +
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTIS-------IPSIYLELKVKLEN------EYALHRSIV 450

Query: 667 DYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERR---------- 716
           D+    +  D   L    + D Y      + I        H+  +    R          
Sbjct: 451 DHYNIPKTFDSDDLI-PPYLDQYF----YSHIGH------HLKNIEHPERMTLFRMVFLD 499

Query: 717 LAWLEKRIDH 726
             +LE++I H
Sbjct: 500 FRFLEQKIRH 509
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query771
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 98.1
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 97.82
1ais_B200 TFB TFIIB, protein (transcription initiation facto 96.02
1c9b_A207 General transcription factor IIB; protein-DNA comp 95.72
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 94.68
1nui_A255 DNA primase/helicase; zinc-biding domain, toprim f 92.52
1pft_A50 TFIIB, PFTFIIBN; N-terminal domain, transcription 92.29
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 91.38
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 89.94
1vq8_Z83 50S ribosomal protein L37AE; ribosome 50S, protein 89.09
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 89.06
2ivx_A257 Cyclin-T2; transcription regulation, cell division 88.73
1dl6_A58 Transcription factor II B (TFIIB); zinc ribbon, ge 88.61
3j20_Y50 30S ribosomal protein S27AE; archaea, archaeal, KI 85.63
3k1f_M197 Transcription initiation factor IIB; RNA polymeras 84.05
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 83.63
1qyp_A57 RNA polymerase II; transcription, RPB9, Zn ribbon, 83.38
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 82.16
2k4x_A55 30S ribosomal protein S27AE; metal-binding, ribonu 81.75
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
Probab=98.10  E-value=1.6e-05  Score=86.10  Aligned_cols=146  Identities=11%  Similarity=0.077  Sum_probs=52.0

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcCCCCcccccccccccccccccCCCCcccCCCCCCccccchhhHHHHHH
Q 004163          170 QCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELAESKDFQPRAKYRDEPHTLHGQRAVMIWYK  249 (771)
Q Consensus       170 Q~~aLV~~~G~ppELe~VVrdLWlRyL~~s~v~~~~~a~~~l~~Se~~sE~e~~ssq~~as~~~e~~~~~~kRk~~~wpr  249 (771)
                      .+..+...+|+|..+......|+.+++...-.                                     .|++..     
T Consensus       132 ~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~-------------------------------------rGrs~e-----  169 (345)
T 4bbr_M          132 KITMLCDAAELPKIVKDCAKEAYKLCHDEKTL-------------------------------------KGKSME-----  169 (345)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTT-------------------------------------TTCCHH-----
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc-------------------------------------cCCCHH-----
Confidence            44667788999999999999888776542100                                     011111     


Q ss_pred             HHhhcCCccchHHHHHHHHHHhhcccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHH
Q 004163          250 LLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLE  329 (771)
Q Consensus       250 llr~~Lp~~~TLAI~YLAcl~LR~PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~  329 (771)
                      .        ..-|-+|+||..-+.|.++-||.....-..-                                     .|-
T Consensus       170 ~--------vaAAclYiACR~~~~prtl~eI~~~~~v~~k-------------------------------------eig  204 (345)
T 4bbr_M          170 S--------IMAASILIGCRRAEVARTFKEIQSLIHVKTK-------------------------------------EFG  204 (345)
T ss_dssp             H--------HHHHHHHHHHHHTCCBCCHHHHHHHHTCCTT-------------------------------------HHH
T ss_pred             H--------HHHHHHHHHHHhcCCCccHHHHHHHhCCCHH-------------------------------------HHH
Confidence            1        3458899999999999999999886642211                                     222


Q ss_pred             HHHHHHHHHhCC------------CCCCCCHHHHHHHHHHHcCCChhhhHHHHHHhhhccCCccCccCCCCCCCChHHHH
Q 004163          330 SFAASIAESIGL------------HLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCV  397 (771)
Q Consensus       330 ~la~~la~~~gL------------~fPpiN~~lLl~Ryl~eL~LP~E~iy~~v~RL~~fs~p~~l~~s~~~~~~Pe~V~L  397 (771)
                      +....+.+.+++            .+|++....++.||+..|+||.+ +...+.+|++......+    ...+-|. ..+
T Consensus       205 r~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~-v~~~A~~i~~~~~~~~i----~~GR~P~-~IA  278 (345)
T 4bbr_M          205 KTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-VTTSAEYTAKKCKEIKE----IAGKSPI-TIA  278 (345)
T ss_dssp             HHHHHHHHCC----------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHhccc----ccCCChH-HHH
Confidence            222333333333            36788888999999999999998 77777777763222111    1124576 777


Q ss_pred             HHHHHHHHHHh
Q 004163          398 MSILIVSIRIL  408 (771)
Q Consensus       398 mA~IIVAlKLL  408 (771)
                      .|+|.+|.++.
T Consensus       279 AAaIylAa~l~  289 (345)
T 4bbr_M          279 VVSIYLNILLF  289 (345)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHHh
Confidence            88888888763
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2 Back     alignment and structure
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ... Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A Back     alignment and structure
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query771
d1dl6a_58 Transcription initiation factor TFIIB, N-terminal 95.58
d1pfta_50 Transcription initiation factor TFIIB, N-terminal 95.08
d2akla238 Hypothetical protein PA0128, N-terminal domain {Ps 91.86
d1nuia254 Zinc-binding domain of primase-helicase {Bacteriop 89.38
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0032  Score=49.86  Aligned_cols=35  Identities=17%  Similarity=0.354  Sum_probs=28.6

Q ss_pred             cccccccCCCCCCce-eecCCcceecccCCeeeccc
Q 004163            7 DIRRLKCKKCDNVGF-ECAYDGFYYCTHCNALDDEI   41 (771)
Q Consensus         7 ~~r~~~C~~C~S~~w-~~~ddG~~yC~~CGhv~Eg~   41 (771)
                      -+-...|++|++..+ .+..+|-++|..||.|++..
T Consensus         8 ~~~~~~Cp~Cgs~~ii~D~~~Ge~vC~~CG~Vlee~   43 (58)
T d1dl6a_           8 ALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDR   43 (58)
T ss_dssp             CCSCCSBTTBSSSCCEECSSSCCEECTTTCCEECCS
T ss_pred             cccccCCCCCCCCCEEEECCCCcEecccCCCEeccc
Confidence            345678999999987 34479999999999998753
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1nuia2 g.41.3.2 (A:10-63) Zinc-binding domain of primase-helicase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure