Citrus Sinensis ID: 004234

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760------
Protein Sequence
MASCSCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHcccccccHHcccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHcccccccccccHHHHHHEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccEEEcccccccccccEEEEccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccccccccccccEEEEEEEEcccccccccccccccccEEEEEEEEccccEEEEccccccccccccEEEEccccEEEEccccccccccEccccccccEEEEcccccEEEEEEcccccEEEEEccccccccccHHHccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHcHccccHHHHHHHHHHHHcccEEEEEccHcccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHEEEEEcccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcEEEEccccccEEEEEEccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccccEEEEEcccEEcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHccccHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHcHHHHHHcccc
Coil and Loop (DISEMBL)
mascscssslalpelrflspkaasRYHLSLSKQSLYRSFlyknyprcnlgrrirvaagkqdgsvvveekrepefikglndfevngngsasrsdsvgsvnggvngyaNGSLVKYVNGNGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDawfkksgqekvevsvapggrwsrfktYSTIQRTLEIWGFVLTFVFRAWLNnqkfsyrggmtEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSelqdqvppfpsetAVSIVEEelgaplddvferfdvepiaaaSLGQVHRARLKGEEVVVKVqrpglkdlfdiDLKNLRVIAEYLQkidpksdgakrdWVAIYDECASVLYQEIDYTQEAANAELFasnfkdmdyvkvptifweyttpqiltmeyvpgikinriQSLDELGVDRKRLGRYAVESYLEQILShgffhadphpgniavddvnggrlifydfgmmgsispnIREGLLEAFYGIYEKDADKVLQAMVQMGvlvptgdttaVRRTAQFFLNSFEERLAAQRKEREITtqelgfkkplskEEKIEKKKQRLAAIGEDLLAIaadqpfrfpatFTFVVRAFSVLdgigkgldprfditEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA
Flexible Loop (DISEMBL)
mascscssslalpeLRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVaagkqdgsvvveekrepefikglndfevngnGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVAVEVVgqveeeeklnkeierkkkveeigkedawfkksgqekvevsvapggrwsrfkTYSTIQRTLEIWGFVLTFVFRAWLNNqkfsyrggmteekKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEevvvkvqrpglkdlfdidlKNLRVIAEYlqkidpksdgakrdWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQrkereittqelgfkkplskeekIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQrleqgdlklrVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKvkkldqreklitgta
Low Complexity Region (SEG)
MascscssslalPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSAsrsdsvgsvnggvngyangsLVKYvngngnggvavevvgqveeeeklnkeierkkkveeigkeDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA
Disordered region (IsUnstruct)
****************FL****ASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVV********I***********************NGGVNGYANGSLVKYVNGNGNGGVAVEVVGQ*************************WF*******VEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSEL**********TAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEE**********************************LAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLD**********
Disordered Region (DISOPRED)
**********ALPELRFLSP***************************************************************************************************************************************************VAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTE*********LAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLI****
Disordered Region (DISEMBL)
*********LALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA
Disordered Region (DISPRO)
****SCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGV**YANGSLVKYVNGNGNGGVAVEVVGQVEEEEKLNK*************************VEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGT*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASCSCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVxxxxxxxxxxxxxxxxxxxxxKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFxxxxxxxxxxxxxxxxxxxxxLGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	766	2.2.26 [Sep-21-2011]
P73627	585	Uncharacterized protein s	N/A	no	0.711	0.931	0.439	1e-141
Q55884	567	Uncharacterized protein s	N/A	no	0.635	0.858	0.360	9e-95
Q55680	681	Uncharacterized protein s	N/A	no	0.617	0.694	0.346	2e-78
P73121	566	Uncharacterized protein s	N/A	no	0.573	0.775	0.337	1e-73
Q9MA15	711	Uncharacterized aarF doma	no	no	0.579	0.624	0.328	6e-67
Q8RWG1	682	Uncharacterized aarF doma	no	no	0.590	0.662	0.324	6e-63
Q94BU1	692	Uncharacterized aarF doma	no	no	0.497	0.550	0.347	7e-63
Q7NZD1	508	Probable ubiquinone biosy	yes	no	0.467	0.704	0.367	4e-60
Q63X97	525	Probable ubiquinone biosy	yes	no	0.593	0.866	0.316	1e-58
A3N5V1	525	Probable ubiquinone biosy	yes	no	0.593	0.866	0.316	1e-58

>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1770 PE=3 SV=1

 Score =  501 bits (1291), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 263/598 (43%), Positives = 387/598 (64%), Gaps = 53/598 (8%)

Query: 173 RWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKES 232
           RW+R   YS  +R ++IWGFVLT +++ WLN +K+SY GG TEEK   RR+  AKW++E+
Sbjct: 33  RWNR-GNYSITRRRIDIWGFVLTLLYQFWLNGKKWSYAGGYTEEKLQQRRRRQAKWIREN 91

Query: 233 ILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDV 292
           +L LGPTFIK+GQ FSTR D+   EYV+ELS+LQD+VP F  E A  I+EEELG P+  +
Sbjct: 92  LLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEELGKPIAKL 151

Query: 293 FERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP 351
           +  FD  P+AAASLGQVH+A+L  GE+VVVKVQRPGLK LF IDL  L+ IA+Y Q   P
Sbjct: 152 YRSFDPVPLAAASLGQVHKAQLHTGEDVVVKVQRPGLKKLFTIDLAILKKIAQYFQN-HP 210

Query: 352 KSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQI 411
           K  G  RDW  IY+EC  +L+QE DY +E  +A+ F  NF+  D+VKVP ++W YT+ QI
Sbjct: 211 KW-GRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWVKVPRVYWRYTSTQI 269

Query: 412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
           LT+EY+PGIKI+   +L+  G++RK L +    +YL Q+L+HGFFHADPHPGN+AV    
Sbjct: 270 LTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPGNLAVSP-E 328

Query: 472 GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT 531
            G LIFYDFGMMG I+P+ +  L++  +G+ EK+A++++ ++V +G L  T D   +RR+
Sbjct: 329 AGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGALKETEDMGPIRRS 388

Query: 532 AQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQP 591
            QF L++F +                   KP         ++Q +  I +DL  IA DQP
Sbjct: 389 VQFLLDNFMD-------------------KPF--------EEQSITKISDDLYEIAYDQP 421

Query: 592 FRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK----FREAGVEVILKDF 647
           FRFPATFTFV+RAFS L+G+GKGLDP F+   +A+P+A++++     F  AG      + 
Sbjct: 422 FRFPATFTFVMRAFSTLEGVGKGLDPDFNFMAVAQPFALQIMNNSNGFNPAG------NI 475

Query: 648 RNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVG 707
            +   RQ     N      R  ++ +++ RL++GD+++RVR+ E++R  +R+  +Q    
Sbjct: 476 MDELGRQAVQVGNSALGLPR--RIEDSLDRLDRGDIRVRVRSTETDRLLRRMGTMQMGTN 533

Query: 708 SAVGAGSLVNLATILYLNSIRVPA---ILAYVSCAFFGFQVLFGIIKVKKLDQREKLI 762
             +   +LV  AT+L++N+  + A   +L  +  AF  +++L      K+L++++++ 
Sbjct: 534 YVLFTCALVLSATLLFVNNYFMAAAVVLLMSLVPAFALWRLL------KRLERQDRMF 585

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0095 PE=3 SV=1

 Score =  348 bits (893), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 193/536 (36%), Positives = 311/536 (58%), Gaps = 49/536 (9%)

Query: 192 FVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRV 251
           F+L   F +W           +T  +   RR   A+WL + +L LGPTFIKIGQ  STR 
Sbjct: 33  FLLFVFFLSW---------DRLTAPRSAQRRYRRAQWLVQQLLYLGPTFIKIGQSLSTRA 83

Query: 252 DILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHR 311
           DI+  EY++  ++LQD+VPPF S  A++++E+EL   +D++F++F+V P+A+ASLGQVHR
Sbjct: 84  DIIPAEYIEAFTQLQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVTPLASASLGQVHR 143

Query: 312 ARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP--KSDGAKRDWVAIYDECA 368
           A L  GE VVVKVQRPGL  L ++D + L       ++  P  +    K +  AIY E  
Sbjct: 144 AVLPTGEAVVVKVQRPGLDSLLNLDFELLHQTLRLAKRWLPGFRRLAQKYEIEAIYQEFF 203

Query: 369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL 428
           S+L+ EIDY  E  NAE F  NF D   V+VP I+W+YTT  +LT+EY+PGIK++  Q+L
Sbjct: 204 SLLFLEIDYIHEGKNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEYLPGIKVDDRQAL 263

Query: 429 DELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP 488
           +  G++   + +  + +YL+Q+L  GFF +DPHPGN+AVD  + G LIFYDFG M  +  
Sbjct: 264 ETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVD--SQGDLIFYDFGTMAEVKI 321

Query: 489 NIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRK 548
             ++ +++ F+ +  KD ++VL+A++ MG++ P GD + ++R   F L++F +       
Sbjct: 322 IAKDQMVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLDNFRD------- 374

Query: 549 EREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVL 608
                       KP+     I+   Q    +GE++ A+   QPFR P   TF++++ S L
Sbjct: 375 ------------KPID----IKAFDQ----VGEEVYAMFQQQPFRLPPQMTFILKSISTL 414

Query: 609 DGIGKGLDPRFDITEIAKPY--AMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQAD 666
           DGI + LDPR+++   ++P+  ++ + + + +    +L+  +        A   L R + 
Sbjct: 415 DGIARALDPRYNLIAASQPFIQSITVAQPKRSLAMALLQQVKQ------FALDQLNRPSR 468

Query: 667 RVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATIL 722
             + L E   +LE+G+L+   R+ E +R  +++    K++  A   G  +  AT+L
Sbjct: 469 NQQFLQELAAKLERGELQFATRSPEGDRLLRKIHLALKSLIFACLTGFTLLSATVL 524

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0005 PE=3 SV=1

 Score =  294 bits (752), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 184/531 (34%), Positives = 283/531 (53%), Gaps = 58/531 (10%)

Query: 143 KKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWL 202
           K  +E++G     F +S +   ++ +     + R +    + R + I   +L F+   W 
Sbjct: 34  KSHLEDLGPVSDMFPESWEYHPDLIM----EFYRKRPLQVLGRLINILFPLLRFILGIWW 89

Query: 203 NNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDEL 262
                  RG   ++  V R KA+   L+E +  LGPT+IK+GQ  STR D++   ++DEL
Sbjct: 90  EK----LRG---KDPTVSRAKAIQ--LRELLTNLGPTYIKVGQALSTRPDLVPPVFLDEL 140

Query: 263 SELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVV 321
           + LQDQ+P FP+E A   +EEELGAP ++++     EPIAAASLGQV++ +LK GE V V
Sbjct: 141 TTLQDQLPSFPNEVAYRFIEEELGAPAEEIYAELSPEPIAAASLGQVYKGKLKTGEAVAV 200

Query: 322 KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEA 381
           KVQRP L     +D+  +R ++ + ++        + D VAI DE AS +++E++Y QEA
Sbjct: 201 KVQRPDLVRRITLDIYIMRSLSLWARR---SVKRLRSDLVAITDELASRVFEEMNYYQEA 257

Query: 382 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY 441
            N E FA  +  +  + VP+I+W+YT  ++LTME+V GIK+  I+++   G+D   L   
Sbjct: 258 INGEKFAQLYGSLPEIYVPSIYWQYTGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEV 317

Query: 442 AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGI 501
            V+  L Q+L HGFFHADPHPGN+    +  GRL + DFGMM +I P  R GL+EA   +
Sbjct: 318 GVQCSLRQLLEHGFFHADPHPGNLLA--MADGRLAYLDFGMMSTIQPYQRYGLIEAVVHL 375

Query: 502 YEKDADKVLQAMVQMGVLVPTGDTTA-VRRTAQFFLNSFEERLAAQRKEREITTQELGFK 560
             +D D + +  V++  L P  D    +    Q F N+    +A           EL FK
Sbjct: 376 VNRDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFGNALGASVA-----------ELNFK 424

Query: 561 KPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFD 620
                            +I + + A+  + PFR PA +  ++R+   L+GI  G+DP F 
Sbjct: 425 -----------------SITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFK 467

Query: 621 ITEIAKPYAMELL------KFREAGVEVILKDFRNRWDRQTRAFYNLFRQA 665
           +   A PY  + L      + R +  E++ K+   RW+R      NL R A
Sbjct: 468 VLSKAYPYIAKRLLTDQSEELRTSLKELLFKEGSFRWNR----LENLLRNA 514

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1919 PE=3 SV=1

 Score =  278 bits (710), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 166/492 (33%), Positives = 252/492 (51%), Gaps = 53/492 (10%)

Query: 172 GRWSRFKTYSTIQRTLEI---WGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKW 228
             + R + +  + R LE+   +GF LT +       Q   Y+    E+            
Sbjct: 25  ANYYRRRPWKVLWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQRAED------------ 72

Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
           L+E + +LGPTFIK+GQ  STR D++ +++++EL +LQDQ+PPF ++ A  ++EE+LG  
Sbjct: 73  LRELLTKLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMK 132

Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
           +D+ +      P+AAASLGQV+RA L  GEEV VKVQRP L+    +DL  +R+ A+   
Sbjct: 133 VDEAYREISAHPVAAASLGQVYRAMLFSGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFG 192

Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
           +  P + G   D   I DE    L++EIDY  E  NAE FA NF     VKVP I+W+Y+
Sbjct: 193 RFLPLNLG--HDLTLIVDEFGIKLFEEIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYS 250

Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
             ++LT+E++ G K+     +   G+D   + R  V S L Q+L HGFFHADPHPGN+  
Sbjct: 251 NQKVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFA 310

Query: 468 DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA 527
                GR+ + DFGMM  + P  +E +  +   +  KD   + +  + +G L P  D T 
Sbjct: 311 --TLDGRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITP 368

Query: 528 VRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIA 587
           +    +   N F   +         + Q+  FK                  I +D   + 
Sbjct: 369 IIPALE---NVFGSAIGQ-------SVQDFNFK-----------------TITDDFSELM 401

Query: 588 ADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELL------KFREAGVE 641
            D PFR PA F  ++R+    +G+   LDP F I E+A PY    L      + R   ++
Sbjct: 402 YDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIVEVAYPYVARRLLTGESPQLRRQLID 461

Query: 642 VILKDFRNRWDR 653
           V+ K+ + +W R
Sbjct: 462 VLFKNGKFQWQR 473

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1 SV=1

 Score =  256 bits (653), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 164/499 (32%), Positives = 256/499 (51%), Gaps = 55/499 (11%)

Query: 178 KTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLG 237
           + +  ++R+LEI G +  F  +  ++ ++ +    M +    LRR            RLG
Sbjct: 108 QPFKALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKRAIELRR---------IFTRLG 158

Query: 238 PTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFD 297
           PTF+K+GQ  STR D+   +Y++EL+ELQD +P FP   A + +E EL   L+ +F    
Sbjct: 159 PTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIFSSVS 218

Query: 298 VEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDG 355
            EPIAAASLGQV++A+L+  G+ V VKVQRPG+++   +D   +R + + + K     D 
Sbjct: 219 PEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKY---VDF 275

Query: 356 AKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTME 415
              D + + DE A  +YQE++Y QEA NA  F   + D   V VP IFW+YT+ ++LTME
Sbjct: 276 ITTDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKVLTME 335

Query: 416 YVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGN-IAVDDVNGGR 474
           +V G K+N   +++  G+    L    ++  L Q+L +GFFHADPHPGN +A  D   G+
Sbjct: 336 WVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPD---GK 392

Query: 475 LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF 534
           L F DFGMM       R  ++     +  +D + + +    +  L P  D T +    + 
Sbjct: 393 LAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRD 452

Query: 535 FLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRF 594
           F   F++ L         T  EL FK                  + + L A+    PF  
Sbjct: 453 F---FDDAL-------NYTVSELNFK-----------------TLVDGLGAVFYQYPFNV 485

Query: 595 PATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY-AMELLK-----FREAGVEVILKDFR 648
           P  +  ++R+ +VL+G+    DP F +   + PY A  LL       R+A +E++ KD +
Sbjct: 486 PPYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDGK 545

Query: 649 NRWDRQTRAFYNLFRQADR 667
            RW+R      NL +Q  +
Sbjct: 546 FRWNR----LENLLQQGSK 560

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: -

EC: .

EC: -

>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1 SV=1

 Score =  243 bits (619), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 165/508 (32%), Positives = 248/508 (48%), Gaps = 56/508 (11%)

Query: 156 FKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEI-WGFVLTFVFRAWLNNQKFSYRGGMT 214
           F+K   E V   V      SR    S + R +EI W   L      + +   + +  G  
Sbjct: 110 FRKYSPETVRSKVLE----SRGAVVSLVSRGVEIVWTLGL------YWSTLTYDFLVGRD 159

Query: 215 EEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPS 274
           EE    R    A+ L+  +  LGP+FIK GQ  + R DI+ ++Y++EL  LQD VPPFP+
Sbjct: 160 EEVVPFR----ARQLRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPN 215

Query: 275 ETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLF 332
           E A +I+EEELG PL+++F +   + IAAASLGQV+RA L+  GE+V +KVQRP ++ + 
Sbjct: 216 EVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPII 275

Query: 333 DIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFK 392
             DL   R +A +L     +  G   +   I DE    L +E+DYT EA N E F  NFK
Sbjct: 276 YRDLFLFRTLASFLNGFSLQKLGCNAEL--IVDEFGEKLLEELDYTLEARNIEDFLENFK 333

Query: 393 DMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS 452
           D   VK+P ++     P++L ME++ GI+    Q++ + G+D        V + L Q+L 
Sbjct: 334 DDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLE 393

Query: 453 HGFFHADPHPGNI-AVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 511
            G FH DPHPGNI A+ D   GR+ + DFG +  +S   ++ L++A      +D  ++  
Sbjct: 394 FGLFHGDPHPGNIFAMQD---GRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMAN 450

Query: 512 AMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEK 571
              ++G L    D + +    +    +   +  A    R +T Q   F K          
Sbjct: 451 DFTRLGFLAKDTDVSPIVPALEAIWQNSAGKGLADFNFRSVTGQ---FNK---------- 497

Query: 572 KKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAME 631
                         +  D P R P  F+ V+R+    +GI   L P F   E+A PY  +
Sbjct: 498 --------------LVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAK 543

Query: 632 LL------KFREAGVEVILKDFRNRWDR 653
            L        RE  ++V+ KD   +W R
Sbjct: 544 RLLTDPNPALRERLIQVLFKDGVFQWKR 571

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: -

EC: .

EC: -

>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1 SV=1

 Score =  242 bits (618), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 149/429 (34%), Positives = 230/429 (53%), Gaps = 48/429 (11%)

Query: 207 FSYRGGMTEEKKVLRR-----KALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDE 261
           FSY  G+    + L R     K  A  L++ ++ LGP ++KI Q  S+R D++   Y+DE
Sbjct: 96  FSYWFGLRLADEALERSDQMFKVRAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDE 155

Query: 262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEV 319
           LS LQDQ+ PF +E A +++E+ELG P+D++F     EP+AAASLGQV++ARL+  G+ V
Sbjct: 156 LSLLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVV 215

Query: 320 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ 379
            VKVQRPG++    +D   LR IA  ++    K+     D  A+ DE A+ L++E+DY  
Sbjct: 216 AVKVQRPGVRAAIALDTLILRYIAGLIK----KAGRFNSDLEAVVDEWATSLFKEMDYLN 271

Query: 380 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 439
           EA N   F   +  +  V VP ++ EY+T ++L ME+V G K+N +  L         L 
Sbjct: 272 EAQNGIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDL--------YLV 323

Query: 440 RYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFY 499
              V     Q+L +GF+HADPHPGN        G+L + DFGMMG   P +R+G +EA  
Sbjct: 324 EVGVYCSFNQLLEYGFYHADPHPGNFL--RTYDGQLAYLDFGMMGDFRPELRDGFMEACL 381

Query: 500 GIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGF 559
            +  +D   + +  V +G+L PT + +AV +      + F++  A  R  R I+  +L  
Sbjct: 382 HLVNRDFKALAKDFVTLGLLPPTAEKSAVTKA---LTDVFQD--AISRGVRNISFGDL-- 434

Query: 560 KKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRF 619
                           L  +G+ +        FR P  F+ V+R+ +VL+GI  G+ P +
Sbjct: 435 ----------------LGDLGKTMYRFK----FRIPPYFSLVIRSLAVLEGIAIGISPNY 474

Query: 620 DITEIAKPY 628
            +     P+
Sbjct: 475 KVLGSTYPW 483

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: -

EC: .

EC: -

>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1

 Score =  233 bits (594), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/403 (36%), Positives = 222/403 (55%), Gaps = 45/403 (11%)

Query: 236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
           LGP F+K GQ  STR D+L  EY DEL+ LQD+VPPF  + A  +VE  LG  ++++F  
Sbjct: 59  LGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRKVEELFVD 118

Query: 296 FDVEPIAAASLGQVHRARLK------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKI 349
           FD++P+A+AS+ QVH+A L+      G EV VKV RPG+  + + DL  +R +A +++K+
Sbjct: 119 FDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTLAGWVEKL 178

Query: 350 DPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTP 409
              +DG +     +  E    L+ E+D   EAANA     NFK  D + VP +F++Y++ 
Sbjct: 179 --FADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDMLIVPEVFYDYSSR 236

Query: 410 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD 469
           ++LT+E++ GI + +I+ L E GVD ++L R+ VE +  Q+  HGFFHAD HPGNI V  
Sbjct: 237 EVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGNIFV-- 294

Query: 470 VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR 529
              GR I  DFG++GS++   +  L   F   + +D  +V  A ++ G  VP  DT A  
Sbjct: 295 AADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIESG-WVPR-DTRA-- 350

Query: 530 RTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAAD 589
                     EE  AA R     T  E  F+KPLS+            + G  LL +  +
Sbjct: 351 ----------EELEAAVR-----TVCEPIFEKPLSE-----------ISFGMVLLRL-FE 383

Query: 590 QPFRF----PATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY 628
              RF          + +    ++G+G+ LDP  D+ + AKP+
Sbjct: 384 TSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWDTAKPF 426

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365)

>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia pseudomallei (strain K96243) GN=ubiB PE=3 SV=1

 Score =  228 bits (581), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 166/524 (31%), Positives = 269/524 (51%), Gaps = 69/524 (13%)

Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
           L+ ++  LGP F+K GQ  STR D+L  ++ +EL++LQDQVPPF S  A++IVE+ LGA 
Sbjct: 52  LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111

Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
           +D +F+ F+  P+A+AS+ QVH A+LK     G+ V VKV RP +  + D DL  +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171

Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
            + +++   +DG +   R+ VA +D+    L+ E+D  +EAAN      NF  +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226

Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 460
            +FW+Y+TP +L ME + G+ I+++ +L   GVD  +L R  VE +  Q+   GFFHAD 
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286

Query: 461 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV 518
           HPGNI V  D  + GR I  DFG++G++S   +  L + F   +++D  +V    ++ G 
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346

Query: 519 LVPTGDT------TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEK 571
           + P  DT      +A+R   + +F  + ++    Q   R  +T         S+   +E 
Sbjct: 347 VPP--DTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEI 395

Query: 572 KKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAME 631
           + Q L  + + +L +                      +G+G+ LDP  D+ + AKPY +E
Sbjct: 396 QPQ-LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY-LE 431

Query: 632 LLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLE 691
                + G+    + F+    + ++    L R   +         R    DL  ++  L 
Sbjct: 432 RWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQALISHHEAPRAISDDLIRQI--LV 489

Query: 692 SERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAY 735
            +R   R+       G AVGAG+++           RV  +LAY
Sbjct: 490 EQRRTNRLLQALLVFGLAVGAGAVIA----------RVLIVLAY 523

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Burkholderia pseudomallei (strain K96243) (taxid: 272560)

>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia pseudomallei (strain 668) GN=ubiB PE=3 SV=1

 Score =  228 bits (581), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 166/524 (31%), Positives = 269/524 (51%), Gaps = 69/524 (13%)

Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
           L+ ++  LGP F+K GQ  STR D+L  ++ +EL++LQDQVPPF S  A++IVE+ LGA 
Sbjct: 52  LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111

Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
           +D +F+ F+  P+A+AS+ QVH A+LK     G+ V VKV RP +  + D DL  +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171

Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
            + +++   +DG +   R+ VA +D+    L+ E+D  +EAAN      NF  +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226

Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 460
            +FW+Y+TP +L ME + G+ I+++ +L   GVD  +L R  VE +  Q+   GFFHAD 
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286

Query: 461 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV 518
           HPGNI V  D  + GR I  DFG++G++S   +  L + F   +++D  +V    ++ G 
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346

Query: 519 LVPTGDT------TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEK 571
           + P  DT      +A+R   + +F  + ++    Q   R  +T         S+   +E 
Sbjct: 347 VPP--DTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEI 395

Query: 572 KKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAME 631
           + Q L  + + +L +                      +G+G+ LDP  D+ + AKPY +E
Sbjct: 396 QPQ-LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY-LE 431

Query: 632 LLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLE 691
                + G+    + F+    + ++    L R   +         R    DL  ++  L 
Sbjct: 432 RWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQALISHHEAPRAISDDLIRQI--LV 489

Query: 692 SERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAY 735
            +R   R+       G AVGAG+++           RV  +LAY
Sbjct: 490 EQRRTNRLLQALLVFGLAVGAGAVIA----------RVLIVLAY 523

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Burkholderia pseudomallei (strain 668) (taxid: 320373)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	766
224096282	765	predicted protein [Populus trichocarpa]	0.973	0.975	0.791	0.0
356516279	752	PREDICTED: uncharacterized protein sll17	0.979	0.997	0.792	0.0
356525527	757	PREDICTED: uncharacterized protein sll17	0.962	0.973	0.781	0.0
449516721	761	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.979	0.985	0.776	0.0
449451493	761	PREDICTED: uncharacterized protein sll17	0.979	0.985	0.777	0.0
356512736	756	PREDICTED: uncharacterized protein sll17	0.956	0.969	0.784	0.0
357519623	735	ABC transporter-like protein [Medicago t	0.946	0.986	0.783	0.0
356509050	749	PREDICTED: uncharacterized protein sll17	0.975	0.997	0.788	0.0
224083787	627	predicted protein [Populus trichocarpa]	0.814	0.995	0.902	0.0
297794095	755	hypothetical protein ARALYDRAFT_919821 [	0.977	0.992	0.775	0.0

>gi|224096282|ref|XP_002310598.1| predicted protein [Populus trichocarpa] gi|222853501|gb|EEE91048.1| predicted protein [Populus trichocarpa]

 Score = 1224 bits (3168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/780 (79%), Positives = 680/780 (87%), Gaps = 34/780 (4%)

Query: 6   CSSSLALPELRFLSPKAASRYH----LSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQD 61
            +SSL LPEL FLSPK  +  H    LSLS+ S  +  +     + NL  R  V    ++
Sbjct: 1   MASSLPLPELIFLSPKTRTPKHHHHLLSLSRHSFSKLNVSGKKNKFNLPLRTPVTRAVKE 60

Query: 62  GSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSL----------- 110
            + V+EE RE E +K     E+NGNG+         VNG V  Y NG L           
Sbjct: 61  DTAVIEE-REREILK-----ELNGNGNRR-------VNGSVERYVNGGLVSVEEGESSSN 107

Query: 111 ---VKYVNGNGNGGV-AVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEV 166
              VKYVNGNG   V   E++  VEE+++ +KE  R+K++EEIGKEDAWFK++GQ+++EV
Sbjct: 108 ESLVKYVNGNGAAAVETAEIL--VEEKKEGSKEEGRQKRIEEIGKEDAWFKRAGQQQIEV 165

Query: 167 SVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALA 226
           SVAPGGRWSRFKTYSTIQRTLEIWG VLTF+F+AWLNNQKFSYRGGMTEEKK++RRKALA
Sbjct: 166 SVAPGGRWSRFKTYSTIQRTLEIWGSVLTFIFKAWLNNQKFSYRGGMTEEKKMVRRKALA 225

Query: 227 KWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELG 286
           KWLKESILRLGPTFIKIGQQFSTRVDILAQEYVD+LSELQDQVPPFPSETAVSIVEEELG
Sbjct: 226 KWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDQLSELQDQVPPFPSETAVSIVEEELG 285

Query: 287 APLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYL 346
           AP+ D+F+RFD EPIAAASLGQVHRARLKG+EVV+KVQRPGLKDLFDIDLKNLRVIAEYL
Sbjct: 286 APVGDIFDRFDYEPIAAASLGQVHRARLKGQEVVIKVQRPGLKDLFDIDLKNLRVIAEYL 345

Query: 347 QKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY 406
           QK+DPKSDGAKRDWVAIYDECA+VLYQEIDYT EA+NAELFASNFK+M+YVKVP I+WEY
Sbjct: 346 QKVDPKSDGAKRDWVAIYDECANVLYQEIDYTMEASNAELFASNFKEMEYVKVPAIYWEY 405

Query: 407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIA 466
           TTPQ+LTMEYVPGIKIN+IQ+LD+LGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIA
Sbjct: 406 TTPQVLTMEYVPGIKINKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIA 465

Query: 467 VDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT 526
           VDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKD DKVL+AM+QMGVLVPTGD T
Sbjct: 466 VDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDPDKVLEAMIQMGVLVPTGDMT 525

Query: 527 AVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAI 586
           AVRRTA FFLNSFEERLAAQR+E EI T + GFKKPLSK+EKIEKKKQRLAAIGEDLL+I
Sbjct: 526 AVRRTALFFLNSFEERLAAQRREGEIETAQPGFKKPLSKDEKIEKKKQRLAAIGEDLLSI 585

Query: 587 AADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKD 646
           AADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA+ELLKFREAGVEV+LKD
Sbjct: 586 AADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEVLLKD 645

Query: 647 FRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTV 706
           FR RWDRQ+RA YNLFRQADRV+KLA+TIQRLEQGDLKLRVRTLE+ERAFQRVAAVQK V
Sbjct: 646 FRKRWDRQSRAIYNLFRQADRVQKLADTIQRLEQGDLKLRVRTLEAERAFQRVAAVQKIV 705

Query: 707 GSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 766
           GSAV  GSLVNLATILYLNSIRVPAI A + CAFF FQVLFG+IKVKKLDQ+E+LITGTA
Sbjct: 706 GSAVAVGSLVNLATILYLNSIRVPAIAASIFCAFFSFQVLFGLIKVKKLDQQERLITGTA 765

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516279|ref|XP_003526823.1| PREDICTED: uncharacterized protein sll1770-like [Glycine max]

 Score = 1200 bits (3104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/765 (79%), Positives = 670/765 (87%), Gaps = 15/765 (1%)

Query: 4   CSCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGS 63
            + SS L LPEL FLSP+   +  +S SK      +    +   N+  R       ++ S
Sbjct: 1   MATSSPLPLPELHFLSPQTTPKRRISFSKLP-SSPYSVSRHVTSNVSLRTSRIRATREES 59

Query: 64  VVVEEKREPEFIKGLNDFE--VNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGG 121
            + E          LND E   NG  +A+   +  SV G VNG  NGSLVKY   NGNG 
Sbjct: 60  ALAER---------LNDVEWTGNGAAAAAADGNGASVGGYVNGATNGSLVKYGYENGNG- 109

Query: 122 VAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYS 181
           V+ EV+ +VE   KL+++  RKK++EEIGKEDAWFK+SG E+VEV+VAPGGRW+RFKTYS
Sbjct: 110 VSAEVL-EVEASNKLSED-GRKKRLEEIGKEDAWFKQSGNEQVEVAVAPGGRWNRFKTYS 167

Query: 182 TIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFI 241
           TIQRT EIWGF  TF+F+AWLNNQKFSY+GGMTEEK+ LRRK LAKWLKE+ILRLGPTFI
Sbjct: 168 TIQRTFEIWGFFATFIFKAWLNNQKFSYKGGMTEEKQTLRRKVLAKWLKENILRLGPTFI 227

Query: 242 KIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPI 301
           KIGQQFSTRVDIL QEYVD+LSELQDQVPPFPSET+V+IVEEELGAPL D+F++FD EPI
Sbjct: 228 KIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETSVAIVEEELGAPLGDIFDQFDYEPI 287

Query: 302 AAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV 361
           AAASLGQVHRARL G+EVV+KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV
Sbjct: 288 AAASLGQVHRARLNGQEVVIKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV 347

Query: 362 AIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIK 421
           AIYDECASVLYQEIDYT+EAANAELFASNFK+MDYVKVPTI+W+YTTPQILTMEYVPGIK
Sbjct: 348 AIYDECASVLYQEIDYTKEAANAELFASNFKNMDYVKVPTIYWDYTTPQILTMEYVPGIK 407

Query: 422 INRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG 481
           IN+IQ+LD+LGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG
Sbjct: 408 INKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG 467

Query: 482 MMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEE 541
           MMGSISPNIREGLLE FYG+YEKD DKVLQAM+QMGVLVPTGD TAVRRTAQFFLNSFEE
Sbjct: 468 MMGSISPNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFLNSFEE 527

Query: 542 RLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFV 601
           RLAAQR+ERE  T ELGFKKPLSKEEKI+KKKQRLAAIGEDLL+IAADQPFRFPATFTFV
Sbjct: 528 RLAAQRQEREEATTELGFKKPLSKEEKIKKKKQRLAAIGEDLLSIAADQPFRFPATFTFV 587

Query: 602 VRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNL 661
           VRAFSVLDGIGKGLDPRFDITEIAKPYA+ELL+FREAGVEV+LKDFR RWDRQ++AFYNL
Sbjct: 588 VRAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVVLKDFRKRWDRQSQAFYNL 647

Query: 662 FRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATI 721
           FRQADRV+KLA+ IQRLEQGDLKLRVRTLESERAFQRVAAVQKT+GSAV AGSL+NLAT+
Sbjct: 648 FRQADRVDKLADIIQRLEQGDLKLRVRTLESERAFQRVAAVQKTIGSAVAAGSLINLATV 707

Query: 722 LYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 766
           LYLNSIRVPAI AY+ CA FGFQVL GI+KVKKLD+RE+LITGTA
Sbjct: 708 LYLNSIRVPAIAAYIFCALFGFQVLLGIVKVKKLDERERLITGTA 752

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525527|ref|XP_003531376.1| PREDICTED: uncharacterized protein sll1770-like [Glycine max]

 Score = 1197 bits (3097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/763 (78%), Positives = 666/763 (87%), Gaps = 26/763 (3%)

Query: 14  ELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPE 73
           E +FL+P+   +   SLS      S    +  R N+  R R+ A  ++G+V         
Sbjct: 11  EFKFLAPQITPKRRRSLSSFCSRHSVSLNS--RYNVALRTRIRAVMEEGAV--------- 59

Query: 74  FIKGLNDFEVNGNG-SASRSDSVGSVNGGVNGY--------ANGSLVKYVNGNGNGGVAV 124
            I  +ND + +GNG +AS     GSVNG VNG         ANG LVKYVNGNG   VA 
Sbjct: 60  -IDRVNDVKWSGNGVAASEYGGNGSVNGYVNGVSGVMESEDANGRLVKYVNGNG---VAA 115

Query: 125 EVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKK-SGQEKVEVSVAPGGRWSRFKTYSTI 183
           EVV    E  K  KE  RKK++EEIGKEDAWFKK +G+  +EV+VAPGGRWSRFKTYS I
Sbjct: 116 EVVEDFAESLK-RKEDGRKKRLEEIGKEDAWFKKQTGEAPIEVAVAPGGRWSRFKTYSMI 174

Query: 184 QRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKI 243
           QRTLEIWGFV+TF+F++WLNN+KFSY+GGMTEEKK+LRRKALAKWLKESILRLGPTFIK+
Sbjct: 175 QRTLEIWGFVITFIFKSWLNNRKFSYKGGMTEEKKILRRKALAKWLKESILRLGPTFIKV 234

Query: 244 GQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAA 303
           GQQFSTRVDIL QEYVD+LSELQDQVPPFPSETAV+IVEEELG+PL  VF+ F+ EPIAA
Sbjct: 235 GQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAVAIVEEELGSPLASVFDHFEYEPIAA 294

Query: 304 ASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAI 363
           ASLGQVHRARL+G+EVVVKVQRPGLK LFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAI
Sbjct: 295 ASLGQVHRARLRGQEVVVKVQRPGLKALFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAI 354

Query: 364 YDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKIN 423
           YDECASVLYQEIDYT+EAANAELFASNF+++DYVKVPTI W+YTTPQILTMEYVPGIKIN
Sbjct: 355 YDECASVLYQEIDYTKEAANAELFASNFENLDYVKVPTIIWDYTTPQILTMEYVPGIKIN 414

Query: 424 RIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM 483
           +IQ+LD LG+DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM
Sbjct: 415 KIQALDRLGLDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM 474

Query: 484 GSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERL 543
           GSIS NIREGLLEAFYGIYEK+ DKVLQ+M+QMGVLVPTGD TAV+RTAQFFLNSFEERL
Sbjct: 475 GSISQNIREGLLEAFYGIYEKNPDKVLQSMIQMGVLVPTGDMTAVKRTAQFFLNSFEERL 534

Query: 544 AAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVR 603
           AAQR+ERE+ T ELGFK+PLSKEE++ KKK+RLAAIGEDLLAIAADQPFRFPATFTFVVR
Sbjct: 535 AAQRREREMETAELGFKQPLSKEEQVMKKKERLAAIGEDLLAIAADQPFRFPATFTFVVR 594

Query: 604 AFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFR 663
           AFSVLDGIGKGLDPRFDITEIAKPYA+ELL+FREAGVEVILKD R RWDRQ++AFYNLFR
Sbjct: 595 AFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVILKDLRKRWDRQSQAFYNLFR 654

Query: 664 QADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILY 723
           QADRVEKLAE I+RLEQGDLKLRVRTLESERAFQR+A VQ+T+G+A+ AGSL+NLATIL+
Sbjct: 655 QADRVEKLAEIIERLEQGDLKLRVRTLESERAFQRIATVQRTIGNAIAAGSLINLATILF 714

Query: 724 LNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 766
           LNSIRVPA +AYV CA FGFQVLFGI+K+KKLD+RE+LITGTA
Sbjct: 715 LNSIRVPATIAYVFCAIFGFQVLFGIVKIKKLDERERLITGTA 757

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516721|ref|XP_004165395.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein sll1770-like [Cucumis sativus]

 Score = 1195 bits (3091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/770 (77%), Positives = 674/770 (87%), Gaps = 20/770 (2%)

Query: 7   SSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVV 66
           ++SL LPEL F+SPK   R   S S         +    R  + RR ++ A ++DG  VV
Sbjct: 2   ATSLPLPELVFVSPK---RLFSSSSPGCFLYRVPFSRTCRFRVLRRTKLRAVREDG--VV 56

Query: 67  EEKREPEFIKGLNDFEVNGNGSASRSDS----VGSVNGGVN------GYANGSLVKYVNG 116
            E+RE E IK +N + +  NG+A   +      G VNGGV       G  NG+LVKYVNG
Sbjct: 57  AEERENELIKEVNGYGLGSNGAAYNGNGDYRYNGWVNGGVTTVESETGGTNGNLVKYVNG 116

Query: 117 NGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSR 176
           NG   VA  VVG+++  E +  E +RKK++EEIGKE+AWFK+S Q++VEVSVAPGGRW+R
Sbjct: 117 NG---VAAAVVGEIQASESV--EEDRKKRIEEIGKEEAWFKRSDQQQVEVSVAPGGRWNR 171

Query: 177 FKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRL 236
           FKTYSTIQRTLEIWGFV +FV +AWLNNQKF+YRGGMTEEKKV RRK +AKWLKESILRL
Sbjct: 172 FKTYSTIQRTLEIWGFVFSFVLKAWLNNQKFTYRGGMTEEKKVARRKIVAKWLKESILRL 231

Query: 237 GPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERF 296
           GPTFIKIGQQFSTRVDIL QEYVD+LSELQDQVPPFPSETAVSIVEEELG P+  +F+RF
Sbjct: 232 GPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAVSIVEEELGGPVAGIFDRF 291

Query: 297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGA 356
           D EPIAAASLGQVHRARLKG+EVVVKVQRP LK+LFDIDLKNLRVIAEYLQK+DPKSDGA
Sbjct: 292 DREPIAAASLGQVHRARLKGQEVVVKVQRPSLKELFDIDLKNLRVIAEYLQKLDPKSDGA 351

Query: 357 KRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEY 416
           KRDWVAIYDECA+VLYQEIDYT+EAANAELFA+NFK++DYVKVP+IFW+YTTPQ+LTMEY
Sbjct: 352 KRDWVAIYDECANVLYQEIDYTKEAANAELFATNFKNLDYVKVPSIFWDYTTPQVLTMEY 411

Query: 417 VPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 476
           VPGIKIN+I++LD+LG+DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI
Sbjct: 412 VPGIKINKIKALDQLGLDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 471

Query: 477 FYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL 536
           FYDFGMMGSIS NIREGLLE FYG+YEKD DKVLQAM+QMGVLVPTGD TAVRRTAQFFL
Sbjct: 472 FYDFGMMGSISSNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFL 531

Query: 537 NSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPA 596
           NSFEERLAAQR+ERE+ T ELGFKKPL+KEEK+  KK+RLAAIGEDLLAIAADQPFRFPA
Sbjct: 532 NSFEERLAAQRREREMATAELGFKKPLTKEEKLMXKKERLAAIGEDLLAIAADQPFRFPA 591

Query: 597 TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTR 656
           TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA+ELLKFREAGVEV LKDFR RWDRQ+R
Sbjct: 592 TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEVALKDFRKRWDRQSR 651

Query: 657 AFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLV 716
           AFYNLFRQA+RVEKLAE IQRLEQGDLKLRVR LESER+FQRVA VQKT+G+A+ AGSL+
Sbjct: 652 AFYNLFRQAERVEKLAEIIQRLEQGDLKLRVRALESERSFQRVATVQKTLGNAIAAGSLI 711

Query: 717 NLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 766
           NLATIL++NSIR+PA +AY+ CAFFGFQVL G+IKVK+LD+RE+LITGTA
Sbjct: 712 NLATILHINSIRMPATIAYIFCAFFGFQVLIGLIKVKRLDERERLITGTA 761

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451493|ref|XP_004143496.1| PREDICTED: uncharacterized protein sll1770-like [Cucumis sativus]

 Score = 1195 bits (3091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/770 (77%), Positives = 675/770 (87%), Gaps = 20/770 (2%)

Query: 7   SSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVV 66
           ++SL LPEL F+SPK   R   S S         +    R  + RR ++ A ++DG  VV
Sbjct: 2   ATSLPLPELVFVSPK---RLFSSSSPGCFLYRVPFSRTCRFRVLRRTKLRAVREDG--VV 56

Query: 67  EEKREPEFIKGLNDFEVNGNGSASRSDS----VGSVNGGVN------GYANGSLVKYVNG 116
            E+RE E IK +N + +  NG+A   +      G VNGGV       G  NG+LVKYVNG
Sbjct: 57  AEERENELIKEVNGYGLGSNGAAYNGNGDYRYNGWVNGGVTTVESETGGTNGNLVKYVNG 116

Query: 117 NGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSR 176
           NG   VA  VVG+++  E +  E +RKK++EEIGKE+AWFK+S Q++VEVSVAPGGRW+R
Sbjct: 117 NG---VAAAVVGEIQASESV--EEDRKKRIEEIGKEEAWFKRSDQQQVEVSVAPGGRWNR 171

Query: 177 FKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRL 236
           FKTYSTIQRTLEIWGFV +FV +AWLNNQKF+YRGGMTEEKKV RRK +AKWLKESILRL
Sbjct: 172 FKTYSTIQRTLEIWGFVFSFVLKAWLNNQKFTYRGGMTEEKKVARRKIVAKWLKESILRL 231

Query: 237 GPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERF 296
           GPTFIKIGQQFSTRVDIL QEYVD+LSELQDQVPPFPSETAVSIVEEELG P+  +F+RF
Sbjct: 232 GPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAVSIVEEELGGPVAGIFDRF 291

Query: 297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGA 356
           D EPIAAASLGQVHRARLKG+EVVVKVQRP LK+LFDIDLKNLRVIAEYLQK+DPKSDGA
Sbjct: 292 DREPIAAASLGQVHRARLKGQEVVVKVQRPSLKELFDIDLKNLRVIAEYLQKLDPKSDGA 351

Query: 357 KRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEY 416
           KRDWVAIYDECA+VLYQEIDYT+EAANAELFA+NFK++DYVKVP+IFW+YTTPQ+LTMEY
Sbjct: 352 KRDWVAIYDECANVLYQEIDYTKEAANAELFATNFKNLDYVKVPSIFWDYTTPQVLTMEY 411

Query: 417 VPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 476
           VPGIKIN+I++LD+LG+DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI
Sbjct: 412 VPGIKINKIKALDQLGLDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 471

Query: 477 FYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL 536
           FYDFGMMGSIS NIREGLLE FYG+YEKD DKVLQAM+QMGVLVPTGD TAVRRTAQFFL
Sbjct: 472 FYDFGMMGSISSNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFL 531

Query: 537 NSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPA 596
           NSFEERLAAQR+ERE+ T ELGFKKPL+KEEK+ KKK+RLAAIGEDLLAIAADQPFRFPA
Sbjct: 532 NSFEERLAAQRREREMATAELGFKKPLTKEEKLMKKKERLAAIGEDLLAIAADQPFRFPA 591

Query: 597 TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTR 656
           TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA+ELLKFREAGVEV LKDFR RWDRQ+R
Sbjct: 592 TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEVALKDFRKRWDRQSR 651

Query: 657 AFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLV 716
           AFYNLFRQA+RVEKLAE IQRLEQGDLKLRVR LESER+FQRVA VQKT+G+A+ AGSL+
Sbjct: 652 AFYNLFRQAERVEKLAEIIQRLEQGDLKLRVRALESERSFQRVATVQKTLGNAIAAGSLI 711

Query: 717 NLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 766
           NLATIL++NSIR+PA +AY+ CAFFGFQVL G+IKVK+LD+RE+LITGTA
Sbjct: 712 NLATILHINSIRMPATIAYIFCAFFGFQVLIGLIKVKRLDERERLITGTA 761

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512736|ref|XP_003525072.1| PREDICTED: uncharacterized protein sll1770-like [Glycine max]

 Score = 1192 bits (3085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/766 (78%), Positives = 676/766 (88%), Gaps = 33/766 (4%)

Query: 14  ELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPE 73
           EL+FL+P+   +   SLS+      F  +N  R N+  R R+ A K++G+V         
Sbjct: 11  ELKFLAPQITPKRRRSLSR------FCSQN-SRYNVALRTRIRAFKEEGAV--------- 54

Query: 74  FIKGLNDFEVNGNG-SASRSDSVGSVNGGVNGY--------ANGSLVKYVNGNGNG-GVA 123
            I  +ND + +GNG +AS   + GSVNG  NG         ANGSLVKYVN NGNG GVA
Sbjct: 55  -IDRVNDVKWSGNGVAASEYGANGSVNGYANGVSGVRESENANGSLVKYVNDNGNGNGVA 113

Query: 124 VEVVGQVEEEEKLNKEIE--RKKKVEEIGKEDAWFKK-SGQEKVEVSVAPGGRWSRFKTY 180
            EVV   E+  + +K +E  RKK++EEIGKE+AWFKK +G+  +EV+VAPGGRWSRFKTY
Sbjct: 114 AEVV---EDSAEASKRMEDGRKKRLEEIGKEEAWFKKQTGEAPIEVAVAPGGRWSRFKTY 170

Query: 181 STIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTF 240
           S IQRTLEIWGFV+TF+F++WLNN+KFSY+GGMTEEKK  RRKALAKWLKESILRLGPTF
Sbjct: 171 SMIQRTLEIWGFVITFIFKSWLNNRKFSYKGGMTEEKKTSRRKALAKWLKESILRLGPTF 230

Query: 241 IKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEP 300
           IK+GQQFSTRVDIL QEYVD+LSELQDQVPPFPSETA++IVEEELG+PL  VF+ F+ EP
Sbjct: 231 IKVGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAIAIVEEELGSPLAGVFDHFEYEP 290

Query: 301 IAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW 360
           IAAASLGQVHRARL+G+EVVVKVQRPGLK LFDIDLKNLR+IAEYLQKIDPKSDGAKRDW
Sbjct: 291 IAAASLGQVHRARLRGQEVVVKVQRPGLKALFDIDLKNLRIIAEYLQKIDPKSDGAKRDW 350

Query: 361 VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGI 420
           VAIYDECASVLYQEIDYT+EAANAELFASNFK++DYVKVPTI W+YTTPQILTMEYVPGI
Sbjct: 351 VAIYDECASVLYQEIDYTKEAANAELFASNFKNLDYVKVPTIIWDYTTPQILTMEYVPGI 410

Query: 421 KINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDF 480
           KIN+IQ+LD+LG+DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDF
Sbjct: 411 KINKIQALDQLGLDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDF 470

Query: 481 GMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFE 540
           GMMGSIS NIREGLLEAFYGIYEK+ DKVLQ+M+QMGVLVPTGD TAV+RTAQFFLNSFE
Sbjct: 471 GMMGSISQNIREGLLEAFYGIYEKNPDKVLQSMIQMGVLVPTGDMTAVKRTAQFFLNSFE 530

Query: 541 ERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTF 600
           ERLAAQR+ERE+ T ELGFK+PLSKEEK+ KKK+RLAAIGEDLLAIAADQPFRFPATFTF
Sbjct: 531 ERLAAQRREREMATAELGFKQPLSKEEKVMKKKERLAAIGEDLLAIAADQPFRFPATFTF 590

Query: 601 VVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYN 660
           VVRAFSVLDGIGKGLDPRFDITEIAKPYA+ELL+FREAGVEVILKDFR RWDRQ++AFYN
Sbjct: 591 VVRAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVILKDFRKRWDRQSQAFYN 650

Query: 661 LFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLAT 720
           LFRQADRVEKLAE IQRLEQGDLKLRVRTLESERAFQR+A VQKT+G+A+ +GSL+NLAT
Sbjct: 651 LFRQADRVEKLAEIIQRLEQGDLKLRVRTLESERAFQRIATVQKTIGNAIASGSLINLAT 710

Query: 721 ILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 766
           ILYLNSIRVPA +AYV CA FGFQVLFGI+K+KKLD+RE+LITGTA
Sbjct: 711 ILYLNSIRVPATIAYVFCAIFGFQVLFGIVKIKKLDERERLITGTA 756

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519623|ref|XP_003630100.1| ABC transporter-like protein [Medicago truncatula] gi|355524122|gb|AET04576.1| ABC transporter-like protein [Medicago truncatula]

 Score = 1189 bits (3077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/753 (78%), Positives = 662/753 (87%), Gaps = 28/753 (3%)

Query: 14  ELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPE 73
           EL FL+P+   +   S S+              C L  +IR  A K++G++V E      
Sbjct: 11  ELNFLAPQFTPKRRRSNSR-------------FCILPTQIR--ALKEEGALVEE------ 49

Query: 74  FIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVAVEVVGQVEEE 133
             + ++D + +GNG+   + S GSV G VNG  NGSLVKYVNGNG   VAVEVV    E 
Sbjct: 50  --RIVSDVKWSGNGTVV-NGSNGSVRGYVNGGGNGSLVKYVNGNG---VAVEVVEDFVET 103

Query: 134 EKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFV 193
            K  KE+ RKK++EEIGKEDAWFK++G+ +VEV+VAPGGRWSRFKTYSTIQRTLEIWGFV
Sbjct: 104 SK-RKEVGRKKRLEEIGKEDAWFKQNGEPQVEVAVAPGGRWSRFKTYSTIQRTLEIWGFV 162

Query: 194 LTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDI 253
           + F+F++WLN QKFSY+GGMTEEKK LRRK LAKWLKESILRLGPTFIKIGQQFSTRVDI
Sbjct: 163 IQFIFKSWLNRQKFSYKGGMTEEKKTLRRKTLAKWLKESILRLGPTFIKIGQQFSTRVDI 222

Query: 254 LAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRAR 313
           L QEYVD+LSELQDQVPPFPSETA++IVEEELGAP+  +F++FD EPIAAASLGQVHRAR
Sbjct: 223 LPQEYVDQLSELQDQVPPFPSETAMAIVEEELGAPIAGIFDQFDYEPIAAASLGQVHRAR 282

Query: 314 LKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ 373
           L+G+EVV+KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ
Sbjct: 283 LRGQEVVIKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ 342

Query: 374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV 433
           EIDYT+EAANAELFASNFK+MDYVKVP+I+W+YTTPQILTMEYVPGIKIN+IQ+LD+LGV
Sbjct: 343 EIDYTKEAANAELFASNFKNMDYVKVPSIYWDYTTPQILTMEYVPGIKINKIQALDQLGV 402

Query: 434 DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG 493
           DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS NIREG
Sbjct: 403 DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISQNIREG 462

Query: 494 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREIT 553
           LLEAFYG+YEK  DKVL AM+QMGVLVPTGD TAVRRTAQFFLNSFEERLAAQR+E+E+ 
Sbjct: 463 LLEAFYGVYEKSPDKVLDAMIQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRREKEME 522

Query: 554 TQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGK 613
             E+GFKKPLSKEE++ KKK+RLAAIGEDLL+IAADQPFRFPATFTFVVRAFSVLDGIGK
Sbjct: 523 AAEVGFKKPLSKEEQVMKKKERLAAIGEDLLSIAADQPFRFPATFTFVVRAFSVLDGIGK 582

Query: 614 GLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAE 673
           GLDPRFDITEIAKPYA+ELLKFREAGVEVI+KD + RWDRQ++AFYNLFRQADRVEKLA 
Sbjct: 583 GLDPRFDITEIAKPYALELLKFREAGVEVIIKDIKKRWDRQSQAFYNLFRQADRVEKLAN 642

Query: 674 TIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAIL 733
            I+RLEQGDLKLRVR LESERAFQR+A VQKT+G+AVGAGSL+NLATIL LNSIRVPA +
Sbjct: 643 VIERLEQGDLKLRVRALESERAFQRIATVQKTIGNAVGAGSLINLATILSLNSIRVPATI 702

Query: 734 AYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 766
           AY  CA FGFQVL GI+K+KKLD+RE+LITGTA
Sbjct: 703 AYFFCAIFGFQVLLGIVKIKKLDERERLITGTA 735

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509050|ref|XP_003523265.1| PREDICTED: uncharacterized protein sll1770-like [Glycine max]

 Score = 1177 bits (3044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/765 (78%), Positives = 669/765 (87%), Gaps = 18/765 (2%)

Query: 4   CSCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGS 63
            + SS L LPEL FLSP+   +  +SLSK       +  N       R  R+ A +++ +
Sbjct: 1   MAASSPLPLPELHFLSPQITPKRRISLSKLPSISRHVTSNVSL----RTARIRASREESA 56

Query: 64  VVVEEKREPEFIKGLNDFE--VNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGG 121
           +             +ND E   NG  +A+ + +  SV+G VNG  NGSLVKY   +GN  
Sbjct: 57  LA----------DRVNDVEWTGNGAAAAASNANGASVSGYVNGATNGSLVKYGYEDGNDV 106

Query: 122 VAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYS 181
            A EVV +VE   KL+++  RKK++EEIGKEDAWFK++G E+VE  +APGGRW+RFKTYS
Sbjct: 107 AAAEVV-EVEASNKLSED-GRKKRLEEIGKEDAWFKQTGNEQVEGRLAPGGRWNRFKTYS 164

Query: 182 TIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFI 241
           TIQRT EIWGFV TF+F+AWLNNQKFSY+GGMTEEKK LRRKALAKWLKE+ILRLGPTFI
Sbjct: 165 TIQRTFEIWGFVATFIFKAWLNNQKFSYKGGMTEEKKTLRRKALAKWLKENILRLGPTFI 224

Query: 242 KIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPI 301
           KIGQQFSTRVDIL QEYVD+LSELQDQVPPFPSET+V+IVEEELGAPL D+F++FD EPI
Sbjct: 225 KIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETSVAIVEEELGAPLGDIFDQFDYEPI 284

Query: 302 AAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV 361
           AAASLGQVHRA LKG+EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV
Sbjct: 285 AAASLGQVHRATLKGQEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV 344

Query: 362 AIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIK 421
           AIYDECASVLYQEIDYT+EAANAELFASNFK+MDYVKVPTI+W+YTTPQILTMEYVPGIK
Sbjct: 345 AIYDECASVLYQEIDYTKEAANAELFASNFKNMDYVKVPTIYWDYTTPQILTMEYVPGIK 404

Query: 422 INRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG 481
           IN+IQ+LD+LGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG
Sbjct: 405 INKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG 464

Query: 482 MMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEE 541
           MMGSISPNIREGLLE FYG+YEKD DKVLQAM+QMGVLVPTGD TAVRRTAQFFLNSFEE
Sbjct: 465 MMGSISPNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFLNSFEE 524

Query: 542 RLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFV 601
           RLAAQR+ERE  T ELGFKKPLSKEEKI+KKKQRLAAIGEDLL+IAADQPFRFPATFTFV
Sbjct: 525 RLAAQRREREEATTELGFKKPLSKEEKIKKKKQRLAAIGEDLLSIAADQPFRFPATFTFV 584

Query: 602 VRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNL 661
           VRAFSVLDGIGKGLDPRFDITEIAKPYA+ELL+FREAGVEV+LKDFR RWDRQ++AFYNL
Sbjct: 585 VRAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVVLKDFRKRWDRQSQAFYNL 644

Query: 662 FRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATI 721
            RQADRV+KLA  IQRLEQGDLKLRVRTLESERAFQRVAAVQKT+G+AV AGSL+NLAT+
Sbjct: 645 IRQADRVDKLANIIQRLEQGDLKLRVRTLESERAFQRVAAVQKTIGNAVAAGSLINLATV 704

Query: 722 LYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 766
           LYLNSIRVPAI AY+ CA FGFQVL GI+KVKKLD+RE+LITG A
Sbjct: 705 LYLNSIRVPAIAAYIFCAIFGFQVLLGIVKVKKLDERERLITGIA 749

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083787|ref|XP_002307123.1| predicted protein [Populus trichocarpa] gi|222856572|gb|EEE94119.1| predicted protein [Populus trichocarpa]

 Score = 1154 bits (2986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/625 (90%), Positives = 606/625 (96%), Gaps = 1/625 (0%)

Query: 142 RKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAW 201
           RKK++EEIGKE+AWFK++GQ+ VEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTF+F+AW
Sbjct: 4   RKKRIEEIGKEEAWFKRAGQQ-VEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFIFKAW 62

Query: 202 LNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDE 261
           LN+QKFSYRGGMT+EKKV RRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVD+
Sbjct: 63  LNSQKFSYRGGMTKEKKVARRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDQ 122

Query: 262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVV 321
           LSELQDQVPPFPSETAVSIVEEELGAP+DD+F++FD EPIAAASLGQVHRARLKG+EVV+
Sbjct: 123 LSELQDQVPPFPSETAVSIVEEELGAPVDDIFDQFDYEPIAAASLGQVHRARLKGQEVVI 182

Query: 322 KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEA 381
           KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT+EA
Sbjct: 183 KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTKEA 242

Query: 382 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY 441
           ANAELFASNFK M+YVKVPTI WEYTTPQILTMEYVPGIKIN+IQ+LD+LGVDRKRLGRY
Sbjct: 243 ANAELFASNFKKMEYVKVPTINWEYTTPQILTMEYVPGIKINKIQALDQLGVDRKRLGRY 302

Query: 442 AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGI 501
            VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE FYG+
Sbjct: 303 VVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGV 362

Query: 502 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 561
           YEKD DKVL+AMVQMGVLVPTGD TAVRRTAQFFLNSFEERLAAQR+ERE+ T ELGFKK
Sbjct: 363 YEKDPDKVLEAMVQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRREREMATTELGFKK 422

Query: 562 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 621
            L+KEEK+EKKKQRLAAIGEDLL+IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI
Sbjct: 423 QLTKEEKMEKKKQRLAAIGEDLLSIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 482

Query: 622 TEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQG 681
           TEIAKPYA+ELL+FREAGVEV+LKDFR RWDRQ+RAF+NLFRQADRV+KLAETIQRLEQG
Sbjct: 483 TEIAKPYALELLRFREAGVEVLLKDFRKRWDRQSRAFHNLFRQADRVQKLAETIQRLEQG 542

Query: 682 DLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFF 741
           DLKLRVRTLE+ERAFQRVAAVQKTVGSAV AGSL+NLATIL+LNSIRVPA  A + CAFF
Sbjct: 543 DLKLRVRTLEAERAFQRVAAVQKTVGSAVAAGSLINLATILFLNSIRVPATAASILCAFF 602

Query: 742 GFQVLFGIIKVKKLDQREKLITGTA 766
            FQVLFGIIKVK+LDQ+E+LITGTA
Sbjct: 603 SFQVLFGIIKVKRLDQQERLITGTA 627

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794095|ref|XP_002864932.1| hypothetical protein ARALYDRAFT_919821 [Arabidopsis lyrata subsp. lyrata] gi|297310767|gb|EFH41191.1| hypothetical protein ARALYDRAFT_919821 [Arabidopsis lyrata subsp. lyrata]

 Score = 1140 bits (2949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/772 (77%), Positives = 664/772 (86%), Gaps = 23/772 (2%)

Query: 1   MASCSCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQ 60
           MA+ S SSSL LP + F      SR   +++   L R+ L  N+   NL  R R+    +
Sbjct: 1   MATSSSSSSLLLPNINF-----NSRQSTTVAGIFLPRNRLSYNH---NLQLRTRIIRASK 52

Query: 61  DGSVVVEEKREPEFIKGLND--FEVNGNGSASRSDSVGSVNGG--VNGYANGSLVKYVNG 116
           D +V VE++         N+    +NGNGSA +S + G  NG   +NG  NGSLVKYVNG
Sbjct: 53  DDNVAVEDRGNAVINGDYNNGSARLNGNGSARKSVN-GDYNGSARLNGNGNGSLVKYVNG 111

Query: 117 NGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSR 176
           +        V  + EE  K  KE  RKK+VE+IG+EDAWFK + Q++VEVSVAPGGRW+R
Sbjct: 112 S--------VTVETEEVTKKRKEEVRKKRVEDIGQEDAWFKNTQQKQVEVSVAPGGRWNR 163

Query: 177 FKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRL 236
           FKTYSTIQRTLEIWGFV+ F+FR WL+NQKFSY+GGMTEEKKVLRRK LAKWLKE+ILRL
Sbjct: 164 FKTYSTIQRTLEIWGFVVQFIFRTWLSNQKFSYKGGMTEEKKVLRRKILAKWLKENILRL 223

Query: 237 GPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERF 296
           GPTFIKIGQQFSTRVDIL QEYVD+LSELQDQVPPFPS TA+SIVEEELG  ++D+F+RF
Sbjct: 224 GPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSATALSIVEEELGGSVEDIFDRF 283

Query: 297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGA 356
           D EPIAAASLGQVHRARLKG+EVV+KVQRPGLKDLFDIDLKNLRVIAEYLQK+DPKSDGA
Sbjct: 284 DYEPIAAASLGQVHRARLKGQEVVLKVQRPGLKDLFDIDLKNLRVIAEYLQKVDPKSDGA 343

Query: 357 KRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEY 416
           KRDWVAIYDECASVLYQEIDYT+EAAN+ELFA+NFK+++YVKVP+I+WEYTTPQ+LTMEY
Sbjct: 344 KRDWVAIYDECASVLYQEIDYTKEAANSELFANNFKNLEYVKVPSIYWEYTTPQVLTMEY 403

Query: 417 VPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 476
           VPGIKIN+IQ+LD+LGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI
Sbjct: 404 VPGIKINKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 463

Query: 477 FYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL 536
           FYDFGMMGSISPNIREGLLEAFYG+YEKD DKVLQAMVQMGVLVPTGD TAVRRTA FFL
Sbjct: 464 FYDFGMMGSISPNIREGLLEAFYGVYEKDPDKVLQAMVQMGVLVPTGDLTAVRRTALFFL 523

Query: 537 NSFEERLAAQR--KEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRF 594
           NSFEERLAAQR  KE     +ELGFKKPLSKEEK EKKKQRLAAIGEDLLAIAADQPFRF
Sbjct: 524 NSFEERLAAQRKEKEEIAAAEELGFKKPLSKEEKQEKKKQRLAAIGEDLLAIAADQPFRF 583

Query: 595 PATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQ 654
           PATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA+ELL+FREAGVEV++KD R RWDRQ
Sbjct: 584 PATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVVVKDLRKRWDRQ 643

Query: 655 TRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGS 714
           ++AFYNLFRQADRVEKLA  I+RLEQGDLKLRVR LESERAFQRVAAVQKTVGSAV AGS
Sbjct: 644 SQAFYNLFRQADRVEKLAVVIERLEQGDLKLRVRALESERAFQRVAAVQKTVGSAVAAGS 703

Query: 715 LVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 766
           LVNLATILYLNS++ PA +AY  CAFF  QVL G+IKVKK DQREKLITGTA
Sbjct: 704 LVNLATILYLNSLKTPATIAYTVCAFFSLQVLIGVIKVKKFDQREKLITGTA 755

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	766
TAIR|locus:2177719	761	ATH13 "AT5G64940" [Arabidopsis	0.801	0.806	0.876	4e-296
UNIPROTKB|Q3ACS7	541	CHY_1218 "ABC1 family protein"	0.424	0.600	0.405	1.1e-66
TIGR_CMR|CHY_1218	541	CHY_1218 "ABC1 family protein"	0.424	0.600	0.405	1.1e-66
UNIPROTKB|Q74E76	561	GSU1088 "Quinone biosynthesis	0.463	0.632	0.349	3.7e-66
TIGR_CMR|GSU_1088	561	GSU_1088 "ubiquinone biosynthe	0.463	0.632	0.349	3.7e-66
TAIR|locus:2019838	711	AT1G79600 [Arabidopsis thalian	0.464	0.500	0.359	1.6e-65
TAIR|locus:2128116	682	ACDO1 "ABC1-like kinase relate	0.513	0.576	0.347	1.8e-62
TAIR|locus:2013041	692	AT1G71810 [Arabidopsis thalian	0.404	0.447	0.392	2e-61
TAIR|locus:2093711	793	AT3G24190 [Arabidopsis thalian	0.383	0.370	0.387	1.4e-56
TIGR_CMR|SPO_0144	509	SPO_0144 "2-polyprenylphenol 6	0.382	0.575	0.367	1.5e-51

TAIR|locus:2177719 ATH13 "AT5G64940" [Arabidopsis thaliana (taxid:3702)]

 Score = 2807 (993.2 bits), Expect = 4.0e-296, Sum P(2) = 4.0e-296
 Identities = 541/617 (87%), Positives = 582/617 (94%)

Query:   153 DAWFKKSGQEK-VEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRG 211
             DAWFK + Q+K VEVSV PGGRW+RFKTYSTIQRTLEIWGFV+ F+FR WL+N+KFSY+G
Sbjct:   145 DAWFKNNTQQKQVEVSVTPGGRWNRFKTYSTIQRTLEIWGFVVQFIFRTWLSNKKFSYKG 204

Query:   212 GMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPP 271
             GMTEEKKVLRRK LAKWLKE+ILRLGPTFIKIGQQFSTRVDIL QEYVD+LSELQDQVPP
Sbjct:   205 GMTEEKKVLRRKVLAKWLKENILRLGPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPP 264

Query:   272 FPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDL 331
             FPS TA+SIVEEELG  ++D+F+RFD EPIAAASLGQVHRARLKG+EVV+KVQRPGLKDL
Sbjct:   265 FPSATALSIVEEELGGSVEDIFDRFDYEPIAAASLGQVHRARLKGQEVVLKVQRPGLKDL 324

Query:   332 FDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNF 391
             FDIDLKNLRVIAEYLQK+DPKSDGAKRDWVAIYDECASVLYQEIDYT+EAAN+ELFA+NF
Sbjct:   325 FDIDLKNLRVIAEYLQKVDPKSDGAKRDWVAIYDECASVLYQEIDYTKEAANSELFANNF 384

Query:   392 KDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL 451
             KD++YVKVP+I+WEYTTPQ+LTMEYVPGIKIN+IQ+LD+LGVDRKRLGRYAVESYLEQIL
Sbjct:   385 KDLEYVKVPSIYWEYTTPQVLTMEYVPGIKINKIQALDQLGVDRKRLGRYAVESYLEQIL 444

Query:   452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 511
             SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYG+YEKD DKVLQ
Sbjct:   445 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGVYEKDPDKVLQ 504

Query:   512 AMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKERE--ITTQELGFKKPLSKEEKI 569
             AMVQMGVLVPTGD TAVRRTA FFLNSFEERLAAQRKE+E     +ELGFKKPLSKEEK 
Sbjct:   505 AMVQMGVLVPTGDLTAVRRTALFFLNSFEERLAAQRKEKEEIAAAEELGFKKPLSKEEKQ 564

Query:   570 EKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA 629
             EKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA
Sbjct:   565 EKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA 624

Query:   630 MELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRT 689
             +ELL+FREAGVEV++KD R RWDRQ++AFYNLFRQADRVEKLA  I+RLEQGDLKLRVR 
Sbjct:   625 LELLRFREAGVEVVVKDLRKRWDRQSQAFYNLFRQADRVEKLAVVIERLEQGDLKLRVRA 684

Query:   690 LESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGI 749
             LESERAFQRVAAVQKTVGSAV AGSLVNLATILYLNSI+ PA +AY  CAFF  QVL GI
Sbjct:   685 LESERAFQRVAAVQKTVGSAVAAGSLVNLATILYLNSIKTPATIAYTVCAFFSLQVLIGI 744

Query:   750 IKVKKLDQREKLITGTA 766
             IKVKK DQREKLITGTA
Sbjct:   745 IKVKKFDQREKLITGTA 761

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006810 "transport" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q3ACS7 CHY_1218 "ABC1 family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 611 (220.1 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
 Identities = 140/345 (40%), Positives = 215/345 (62%)

Query:   175 SRFKTYSTIQRTLEIWGFVLTFVFR-AWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESI 233
             SRF+  + I      +GF+LT++ R A L+  + +       E +++    LA  L+E +
Sbjct:    10 SRFREIARIFTEFG-FGFILTYLKRPAALDKVEIN-------EYRLIE---LAGNLREML 58

Query:   234 LRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVF 293
              +LGPTFIK+GQ  ST+ D+L + +  EL +LQD+V P P E   S +E+ LG+PL D+F
Sbjct:    59 EKLGPTFIKLGQVLSTQRDLLPKPFQAELEKLQDRVTPVPFEVIASYIEKNLGSPLHDIF 118

Query:   294 ERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPK 352
               FD  PIA+AS+GQV+RA+LK G+ VVVKV+RPG+ +L   DL+ L  IA ++Q    K
Sbjct:   119 IEFDENPIASASIGQVYRAKLKNGKNVVVKVKRPGVDELIKTDLQILYQIASFIQN---K 175

Query:   353 SDGAKRDW-VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQI 411
             ++  K +  + +++E  S L +E+DYT EA N E F  N K    + +P +FW +T   I
Sbjct:   176 TNWGKINKPLRMWEELKSSLERELDYTGEARNIENFRQNIKYKKLI-IPEVFWNFTNENI 234

Query:   412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
             L +E V GIK++    L E+G+D  +L R  VE ++ QIL  G+FHADPHPGNIA+  + 
Sbjct:   235 LVLEAVYGIKVSERFQLIEMGIDLDQLARDLVEIFILQILEDGYFHADPHPGNIAITPL- 293

Query:   472 GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM 516
              G +I YDFGM+G ++P +RE L+     +  KD  ++ + ++++
Sbjct:   294 -GDIILYDFGMVGFLNPWLREILITLLISVVRKDFARISELLIEL 337

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_1218 CHY_1218 "ABC1 family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 611 (220.1 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
 Identities = 140/345 (40%), Positives = 215/345 (62%)

Query:   175 SRFKTYSTIQRTLEIWGFVLTFVFR-AWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESI 233
             SRF+  + I      +GF+LT++ R A L+  + +       E +++    LA  L+E +
Sbjct:    10 SRFREIARIFTEFG-FGFILTYLKRPAALDKVEIN-------EYRLIE---LAGNLREML 58

Query:   234 LRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVF 293
              +LGPTFIK+GQ  ST+ D+L + +  EL +LQD+V P P E   S +E+ LG+PL D+F
Sbjct:    59 EKLGPTFIKLGQVLSTQRDLLPKPFQAELEKLQDRVTPVPFEVIASYIEKNLGSPLHDIF 118

Query:   294 ERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPK 352
               FD  PIA+AS+GQV+RA+LK G+ VVVKV+RPG+ +L   DL+ L  IA ++Q    K
Sbjct:   119 IEFDENPIASASIGQVYRAKLKNGKNVVVKVKRPGVDELIKTDLQILYQIASFIQN---K 175

Query:   353 SDGAKRDW-VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQI 411
             ++  K +  + +++E  S L +E+DYT EA N E F  N K    + +P +FW +T   I
Sbjct:   176 TNWGKINKPLRMWEELKSSLERELDYTGEARNIENFRQNIKYKKLI-IPEVFWNFTNENI 234

Query:   412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
             L +E V GIK++    L E+G+D  +L R  VE ++ QIL  G+FHADPHPGNIA+  + 
Sbjct:   235 LVLEAVYGIKVSERFQLIEMGIDLDQLARDLVEIFILQILEDGYFHADPHPGNIAITPL- 293

Query:   472 GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM 516
              G +I YDFGM+G ++P +RE L+     +  KD  ++ + ++++
Sbjct:   294 -GDIILYDFGMVGFLNPWLREILITLLISVVRKDFARISELLIEL 337

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74E76 GSU1088 "Quinone biosynthesis kinase AarF, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 587 (211.7 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
 Identities = 129/369 (34%), Positives = 212/369 (57%)

Query:   178 KTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKV--LRRKALAKWLKESILR 235
             + Y  I R L  +GF       + +   +F  RG     K    L R + A+ ++ ++  
Sbjct:    15 RRYRQIVRVLVKYGFEHAL---SLMGLSRFVARGRRLFRKPEPELARLSPAERMRLALEE 71

Query:   236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
             LGPTF+K+GQ  STR D++ + +V E + LQDQVP FP E A+  +  ELG   ++ F  
Sbjct:    72 LGPTFVKLGQILSTRPDVIPRSFVLEFARLQDQVPSFPFEDALDQIRRELGRDPEERFSF 131

Query:   296 FDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD 354
              D EP+AAAS+ QVHRARL  GEEVV+KV+RPG+ +  + D+  +  +A   ++  P+SD
Sbjct:   132 IDPEPLAAASIAQVHRARLVSGEEVVIKVRRPGVVEAVETDIDAMMGLAVLAERHLPRSD 191

Query:   355 GAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTM 414
                 D V +  E A  + +E+D+ +E    E FA NF     +  PT+ W+ T   +LTM
Sbjct:   192 --IYDPVGLVKEFARTIRREMDFAREGHTIERFAENFAGDPTLYFPTVHWDCTARGLLTM 249

Query:   415 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNG 472
             E++ GIK++   +L+  G+DR+ + R   +++L+ +L+HGFFH DPHPGN+ +  D+V  
Sbjct:   250 EFINGIKVSDTAALERAGMDRRLIARRGADAFLKMVLTHGFFHGDPHPGNVLILPDNV-- 307

Query:   473 GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA 532
               +   D+GM+G +   ++  L +    I ++D D+V+  ++  G +  T DT A++R  
Sbjct:   308 --ICLLDYGMVGRLDAQLKGYLTDILLAIVQRDVDEVISLLLYSGEIADTLDTRALKRDL 365

Query:   533 QFFLNSFEE 541
                ++++ E
Sbjct:   366 TGLIDNYYE 374

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|GSU_1088 GSU_1088 "ubiquinone biosynthesis protein AarF, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 587 (211.7 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
 Identities = 129/369 (34%), Positives = 212/369 (57%)

Query:   178 KTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKV--LRRKALAKWLKESILR 235
             + Y  I R L  +GF       + +   +F  RG     K    L R + A+ ++ ++  
Sbjct:    15 RRYRQIVRVLVKYGFEHAL---SLMGLSRFVARGRRLFRKPEPELARLSPAERMRLALEE 71

Query:   236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
             LGPTF+K+GQ  STR D++ + +V E + LQDQVP FP E A+  +  ELG   ++ F  
Sbjct:    72 LGPTFVKLGQILSTRPDVIPRSFVLEFARLQDQVPSFPFEDALDQIRRELGRDPEERFSF 131

Query:   296 FDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD 354
              D EP+AAAS+ QVHRARL  GEEVV+KV+RPG+ +  + D+  +  +A   ++  P+SD
Sbjct:   132 IDPEPLAAASIAQVHRARLVSGEEVVIKVRRPGVVEAVETDIDAMMGLAVLAERHLPRSD 191

Query:   355 GAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTM 414
                 D V +  E A  + +E+D+ +E    E FA NF     +  PT+ W+ T   +LTM
Sbjct:   192 --IYDPVGLVKEFARTIRREMDFAREGHTIERFAENFAGDPTLYFPTVHWDCTARGLLTM 249

Query:   415 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNG 472
             E++ GIK++   +L+  G+DR+ + R   +++L+ +L+HGFFH DPHPGN+ +  D+V  
Sbjct:   250 EFINGIKVSDTAALERAGMDRRLIARRGADAFLKMVLTHGFFHGDPHPGNVLILPDNV-- 307

Query:   473 GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA 532
               +   D+GM+G +   ++  L +    I ++D D+V+  ++  G +  T DT A++R  
Sbjct:   308 --ICLLDYGMVGRLDAQLKGYLTDILLAIVQRDVDEVISLLLYSGEIADTLDTRALKRDL 365

Query:   533 QFFLNSFEE 541
                ++++ E
Sbjct:   366 TGLIDNYYE 374

GO:0003674 "molecular_function" evidence=ND

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

TAIR|locus:2019838 AT1G79600 [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
 Identities = 138/384 (35%), Positives = 214/384 (55%)

Query:   180 YSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPT 239
             +  ++R+LEI G +  F  +  ++ QK   +G +   +K ++++A+   L+    RLGPT
Sbjct:   110 FKALRRSLEILGALGGFALKLGID-QK---QGNL---EKNMKKRAIE--LRRIFTRLGPT 160

Query:   240 FIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVE 299
             F+K+GQ  STR D+   +Y++EL+ELQD +P FP   A + +E EL   L+ +F     E
Sbjct:   161 FVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIFSSVSPE 220

Query:   300 PIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK 357
             PIAAASLGQV++A+L+  G+ V VKVQRPG+++   +D   +R + + + K     D   
Sbjct:   221 PIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKY---VDFIT 277

Query:   358 RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYV 417
              D + + DE A  +YQE++Y QEA NA  F   + D   V VP IFW+YT+ ++LTME+V
Sbjct:   278 TDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKVLTMEWV 337

Query:   418 PGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNI-AVDDVNGGRLI 476
              G K+N   +++  G+    L    ++  L Q+L +GFFHADPHPGN+ A  D   G+L 
Sbjct:   338 EGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPD---GKLA 394

Query:   477 FYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL 536
             F DFGMM       R  ++     +  +D + + +    +  L P  D T +    + F 
Sbjct:   395 FLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRDF- 453

Query:   537 NSFEERLAAQRKEREITTQELGFK 560
               F++ L         T  EL FK
Sbjct:   454 --FDDAL-------NYTVSELNFK 468

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2128116 ACDO1 "ABC1-like kinase related to chlorophyll degradation and oxidative stress 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
 Identities = 146/420 (34%), Positives = 221/420 (52%)

Query:   156 FKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEI-WGFVLTFVFRAWLNNQKFSYRGGMT 214
             F+K   E V   V      SR    S + R +EI W   L      W +   + +  G  
Sbjct:   110 FRKYSPETVRSKVLE----SRGAVVSLVSRGVEIVWTLGLY-----W-STLTYDFLVGRD 159

Query:   215 EEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPS 274
             EE    R    A+ L+  +  LGP+FIK GQ  + R DI+ ++Y++EL  LQD VPPFP+
Sbjct:   160 EEVVPFR----ARQLRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPN 215

Query:   275 ETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLF 332
             E A +I+EEELG PL+++F +   + IAAASLGQV+RA L+  GE+V +KVQRP ++ + 
Sbjct:   216 EVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPII 275

Query:   333 DIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFK 392
               DL   R +A +L     +  G   +   I DE    L +E+DYT EA N E F  NFK
Sbjct:   276 YRDLFLFRTLASFLNGFSLQKLGCNAE--LIVDEFGEKLLEELDYTLEARNIEDFLENFK 333

Query:   393 DMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS 452
             D   VK+P ++     P++L ME++ GI+    Q++ + G+D        V + L Q+L 
Sbjct:   334 DDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLE 393

Query:   453 HGFFHADPHPGNI-AVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 511
              G FH DPHPGNI A+ D   GR+ + DFG +  +S   ++ L++A      +D  ++  
Sbjct:   394 FGLFHGDPHPGNIFAMQD---GRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMAN 450

Query:   512 AMVQMGVLVPTGDTTAVRRTAQ-FFLNSFEERLAAQRKEREITTQ--ELGFKKPLSKEEK 568
                ++G L    D + +    +  + NS  + LA     R +T Q  +L +  P+   E+
Sbjct:   451 DFTRLGFLAKDTDVSPIVPALEAIWQNSAGKGLA-DFNFRSVTGQFNKLVYDFPIRIPER 509

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=IMP

GO:0080183 "response to photooxidative stress" evidence=IMP

TAIR|locus:2013041 AT1G71810 [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 130/331 (39%), Positives = 196/331 (59%)

Query:   207 FSYRGGMTEEKKVLRR-----KALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDE 261
             FSY  G+    + L R     K  A  L++ ++ LGP ++KI Q  S+R D++   Y+DE
Sbjct:    96 FSYWFGLRLADEALERSDQMFKVRAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDE 155

Query:   262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEV 319
             LS LQDQ+ PF +E A +++E+ELG P+D++F     EP+AAASLGQV++ARL+  G+ V
Sbjct:   156 LSLLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVV 215

Query:   320 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ 379
              VKVQRPG++    +D   LR IA  ++K    +     D  A+ DE A+ L++E+DY  
Sbjct:   216 AVKVQRPGVRAAIALDTLILRYIAGLIKK----AGRFNSDLEAVVDEWATSLFKEMDYLN 271

Query:   380 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 439
             EA N   F   +  +  V VP ++ EY+T ++L ME+V G K+N +  L  + V     G
Sbjct:   272 EAQNGIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDLYLVEV-----G 326

Query:   440 RYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFY 499
              Y   S+  Q+L +GF+HADPHPGN        G+L + DFGMMG   P +R+G +EA  
Sbjct:   327 VYC--SF-NQLLEYGFYHADPHPGNFL--RTYDGQLAYLDFGMMGDFRPELRDGFMEACL 381

Query:   500 GIYEKDADKVLQAMVQMGVLVPTGDTTAVRR 530
              +  +D   + +  V +G+L PT + +AV +
Sbjct:   382 HLVNRDFKALAKDFVTLGLLPPTAEKSAVTK 412

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2093711 AT3G24190 [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
 Identities = 121/312 (38%), Positives = 184/312 (58%)

Query:   217 KKVLRRK-ALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSE 275
             KKV   + A A  L+E +  LGP +IK+GQ  S R DIL+   + EL +L D+VP +P +
Sbjct:   182 KKVKENEVARAIELREIVTSLGPAYIKLGQALSIRPDILSPAAMTELQKLCDKVPSYPDD 241

Query:   276 TAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFD 333
              A++++EEELG P  DV+      PIAAASLGQV++ RLK  G+ V VKVQRP + +   
Sbjct:   242 VAMALIEEELGKPWYDVYSELSPSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVT 301

Query:   334 IDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFK- 392
             +DL  +R +  +L+K  P+      D V + DE A+  ++E+DY  E  N   FA   K 
Sbjct:   302 VDLFVIRNLGLFLRKF-PQ---VSVDVVGLVDEWAARFFEELDYVNEGENGTYFAEMMKK 357

Query:   393 DMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS 452
             D+  V VP  + +YT+ ++LT  ++ G K++  QS++    D   L    V  YL+Q+L 
Sbjct:   358 DLPQVVVPKTYQKYTSRKVLTTSWIDGEKLS--QSIES---DVGELVNVGVICYLKQLLD 412

Query:   453 HGFFHADPHPGN-IAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 511
              GFFHADPHPGN I   D   G+L   DFG++  ++ + + G++EA   +  +D D +++
Sbjct:   413 TGFFHADPHPGNMIRTPD---GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYDAIVK 469

Query:   512 AMVQMGVLVPTG 523
               V++G  +P G
Sbjct:   470 DFVKLG-FIPDG 480

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TIGR_CMR|SPO_0144 SPO_0144 "2-polyprenylphenol 6-hydroxylase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 483 (175.1 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
 Identities = 111/302 (36%), Positives = 164/302 (54%)

Query:   232 SILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDD 291
             +++ +GP +IK GQ  STR D++ Q+  D+L  LQDQ+PPFP   A+  VE+ELG PL +
Sbjct:    64 ALMAMGPAYIKFGQVLSTRPDVVGQDLADQLRVLQDQLPPFPRAVAMREVEKELGRPLPE 123

Query:   292 VFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKI 349
             +F  F  EPIAAAS+ QVHRARL   GE+V VKV RPG++  F  D+      A  +   
Sbjct:   124 MFSEFS-EPIAAASIAQVHRARLADSGEDVAVKVLRPGIERAFRKDVDAFYFAARIVDLF 182

Query:   350 DPKSDGAKR-DWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTT 408
              P   GA+R   + + +    V+  E+D   E+A A  FA N K+    ++P + W  + 
Sbjct:   183 AP---GARRLRPMEVIEHFDGVVRGELDLRLESAAASEFADNTKEDAGFRLPPVRWSLSA 239

Query:   409 PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVD 468
              +++T+ +  G+ +    +LD  G +R+ LG   +  +L   L  GFFHAD H GN+ V 
Sbjct:   240 RRVMTLGWADGVPLGDNAALDAAGHNRRDLGERVLRLFLLHALRDGFFHADMHQGNLKV- 298

Query:   469 DVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV 528
                 G +I YDFG+MG I    R    E  +G   +D  +V +   + G +  T D    
Sbjct:   299 -AADGDIIAYDFGIMGHIDEYTRRVYAEILFGFIRRDYKRVAEVHFEAGYVPATQDVDEF 357

Query:   529 RR 530
              R
Sbjct:   358 AR 359

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019411001 SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (745 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	766
COG0661	517	COG0661, AarF, Predicted unusual protein kinase [G	1e-151
TIGR01982	437	TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase	1e-105
PRK04750	537	PRK04750, ubiB, putative ubiquinone biosynthesis p	1e-81
pfam03109	117	pfam03109, ABC1, ABC1 family	6e-46
TIGR03724	199	TIGR03724, arch_bud32, Kae1-associated kinase Bud3	1e-05
cd05167	311	cd05167, PI4Kc_III_alpha, Phosphoinositide 4-kinas	1e-04
PRK14879	211	PRK14879, PRK14879, serine/threonine protein kinas	3e-04
cd05120	155	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphot	6e-04

>gnl|CDD|223733 COG0661, AarF, Predicted unusual protein kinase [General function prediction only]

 Score =  450 bits (1161), Expect = e-151
 Identities = 191/557 (34%), Positives = 281/557 (50%), Gaps = 49/557 (8%)

Query: 173 RWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKES 232
                       R   + G +L    R  L  +  S+ G          R+  A+ L+ +
Sbjct: 5   YAVSRLPRIIRVRLRYLLGRLLRLTGRLALLLRLLSWLGKSKLASSEELREKRAERLRLA 64

Query: 233 ILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDV 292
           +  LGPTFIK+GQ  STR D++  EY +EL++LQD+VPPFP E A  I+EEELG P++++
Sbjct: 65  LEELGPTFIKLGQILSTRPDLVPPEYAEELAKLQDRVPPFPFEEAERIIEEELGRPIEEL 124

Query: 293 FERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP 351
           F  F+ EPIA+AS+ QVHRA LK GEEV VKVQRPG+++  + DLK LR +A  ++++ P
Sbjct: 125 FSEFEPEPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPP 184

Query: 352 KSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQI 411
              G + D V + DE    L +E+DY +EAANAE F  NFKD   V VP ++WEYTT ++
Sbjct: 185 --GGRRLDLVEVVDEFEKRLREELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRV 242

Query: 412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
           LTME++ GIKI+ I +L   G+DRK L    V ++L Q+L  GFFHADPHPGNI V    
Sbjct: 243 LTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLRDGFFHADPHPGNILVRSD- 301

Query: 472 GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT 531
            GR++  DFG++G + P  R  L E       +D D+V +  V++G + P  D   +   
Sbjct: 302 -GRIVLLDFGIVGRLDPKFRRYLAELLLAFLNRDYDRVAELHVELGYVPPDTDRDPLAAA 360

Query: 532 AQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQP 591
            +  L                      + KPL +             I + L  +A   P
Sbjct: 361 IRAVLEPI-------------------YGKPLEEIS--------FGEILDKLFEVARRFP 393

Query: 592 FRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRW 651
            R P     + R   +++G+G+ LDPRF++  +A+P   + LK +      +L++ ++  
Sbjct: 394 MRLPPELVLLQRTLLLVEGVGRQLDPRFNLWAVAQPLLAKWLKKQL--SPKLLRELKDEA 451

Query: 652 DRQTRAFYNLFRQADRVEKLAETIQRLEQGDLKLRVRTLESER-AFQRVAAVQKTVGSA- 709
                A   L R    +               +  +    SE  A   + AV +    + 
Sbjct: 452 VAVLNALPLLPRLLRDLLDN-----------DREELSLRSSEELALLLLKAVARLSIGSI 500

Query: 710 --VGAGSLVNLATILYL 724
             V     V L  IL L
Sbjct: 501 LLVVLAVTVLLIAILLL 517

Length = 517

>gnl|CDD|233667 TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase

 Score =  328 bits (842), Expect = e-105
 Identities = 143/415 (34%), Positives = 221/415 (53%), Gaps = 32/415 (7%)

Query: 221 RRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSI 280
           R  +  + L+ ++  LGPTFIK GQ  STR D+L  +  +ELS LQD+VPPF  + A  +
Sbjct: 45  RLMSRGERLRLALEELGPTFIKFGQTLSTRADLLPADIAEELSLLQDRVPPFDFKVARKV 104

Query: 281 VEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNL 339
           +E  LG PL+++F  F+ +P+AAAS+ QVHRARL  G+EV VKV RPG++     D+  L
Sbjct: 105 IEAALGGPLEELFAEFEEKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALL 164

Query: 340 RVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKV 399
             +A  ++++ P  D  +     +  E    L +E+D  +EAANA     NFK+   V V
Sbjct: 165 YRLARIVERLSP--DSRRLRPTEVVKEFEKTLRRELDLRREAANASELGENFKNDPGVYV 222

Query: 400 PTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHAD 459
           P ++W+ T+ ++LTME++ GI ++ I +LDE G+DRK L      S+L Q+L  GFFHAD
Sbjct: 223 PEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFFHAD 282

Query: 460 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL 519
            HPGNI V     G++I  DFG++G +S   R  L E  YG   +D  +V +     G +
Sbjct: 283 LHPGNIFVLK--DGKIIALDFGIVGRLSEEDRRYLAEILYGFLNRDYRRVAEVHFDAGYV 340

Query: 520 VPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAI 579
               D           +  FE+ +      R I   E  F +PL        K+  +  +
Sbjct: 341 PSDTD-----------MAEFEQAI------RAIG--EPIFGQPL--------KEISVGRL 373

Query: 580 GEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK 634
              L  I  D           + +    ++G+G+ LDP  ++ ++A+P+    ++
Sbjct: 374 LAGLFKITRDFNMELQPQLLLLQKTLLTVEGVGRQLDPDLNMWKVAEPFVKRWIR 428

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 437

>gnl|CDD|235310 PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed

 Score =  270 bits (692), Expect = 1e-81
 Identities = 116/303 (38%), Positives = 179/303 (59%), Gaps = 12/303 (3%)

Query: 222 RKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIV 281
            K   + L+ ++  LGP F+K GQ  STR D+   +  DEL+ LQD+VPPF    A +I+
Sbjct: 48  DKPRGERLRLALEELGPIFVKFGQMLSTRRDLFPPDIADELALLQDRVPPFDGALARAII 107

Query: 282 EEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNL 339
           E+ LG P+++ F+ FD++P+A+AS+ QVH ARLK  G EVVVKV RP +  + D DL  +
Sbjct: 108 EKALGGPVEEWFDDFDIKPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALM 167

Query: 340 RVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDY 396
             +A +++++ P  DG +   R+ VA +++    L+ E+D  +EAANA     NF+D D 
Sbjct: 168 YRLARWVERLLP--DGRRLKPREVVAEFEK---TLHDELDLMREAANASQLRRNFEDSDM 222

Query: 397 VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFF 456
           + VP ++W+Y +  ++ ME + GI ++ + +L   G D K L    VE +  Q+   GFF
Sbjct: 223 LYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFRDGFF 282

Query: 457 HADPHPGNIAVDDVNG--GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV 514
           HAD HPGNI V        R I  DFG++GS++   +  L E F   + +D  +V +  V
Sbjct: 283 HADMHPGNIFVSYDPPENPRYIALDFGIVGSLNKEDKRYLAENFLAFFNRDYRRVAELHV 342

Query: 515 QMG 517
           + G
Sbjct: 343 ESG 345

Length = 537

>gnl|CDD|111949 pfam03109, ABC1, ABC1 family

 Score =  159 bits (404), Expect = 6e-46
 Identities = 64/122 (52%), Positives = 81/122 (66%), Gaps = 6/122 (4%)

Query: 283 EELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRV 341
           EELGAP+++VF  FD EPIAAAS+ QVHRA LK GEEV VKVQRPG+K     DLK L+ 
Sbjct: 1   EELGAPVEEVFAEFDEEPIAAASIAQVHRAVLKDGEEVAVKVQRPGVKKRIRSDLKLLKF 60

Query: 342 IAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPT 401
           +A+ L+K  P       D   + DE    L QE+D+ +EAANAE F  NF D+ +V VP 
Sbjct: 61  LAKILKKFFP-----GFDLDWLVDEFRKSLPQELDFLREAANAEKFRENFADLPWVYVPK 115

Query: 402 IF 403
           ++
Sbjct: 116 VY 117

This family includes ABC1 from yeast and AarF from E. coli. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex and E. coli AarF is required for ubiquinone production. It has been suggested that members of the ABC1 family are novel chaperonins. These proteins are unrelated to the ABC transporter proteins. Length = 117

>gnl|CDD|234331 TIGR03724, arch_bud32, Kae1-associated kinase Bud32

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 34/141 (24%)

Query: 397 VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR-KRLGRYAVESYLEQILSHGF 455
           V  P ++      + + MEY+ G  +     ++E   +  + +GR      + ++   G 
Sbjct: 59  VNTPVVYDVDPDNKTIVMEYIEGKPLK--DVIEEGNDELLREIGRL-----VGKLHKAGI 111

Query: 456 FHADPHPGNIAVDDVNGGRLIFYDFGM--------------------MGSISPNIREGLL 495
            H D    NI    V   +L   DFG+                    + S  P+  E L 
Sbjct: 112 VHGDLTTSNII---VRDDKLYLIDFGLGKYSDEIEDKAVDLHVLKRSLESTHPDKAEELF 168

Query: 496 EAF---YGIYEKDADKVLQAM 513
           EAF   Y     +A  VL+ +
Sbjct: 169 EAFLEGYREEFGEAKDVLERV 189

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine [Unknown function, General]. Length = 199

>gnl|CDD|119427 cd05167, PI4Kc_III_alpha, Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 31/143 (21%)

Query: 441 YAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP--NIREGLLEAF 498
           Y++ SYL QI        D H GNI +DD   G +I  DFG +  ISP  N++       
Sbjct: 155 YSLISYLLQI-------KDRHNGNIMIDDD--GHIIHIDFGFIFEISPGGNLK------- 198

Query: 499 YGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREI---TT 554
              +E    K+ + MVQ MG    + + T  +   +  + +F   LA +    EI     
Sbjct: 199 ---FESAPFKLTKEMVQIMG---GSMEATPFKWFVELCVRAF---LAVRPYMDEIVSLVE 249

Query: 555 QELGFKKPLSKEEKIEKKKQRLA 577
             L    P  + + I+  +QR A
Sbjct: 250 LMLDSGLPCFRGDTIKNLRQRFA 272

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling molecule. Vertebrate PI4KIIIalpha is also part of a signaling complex associated with P2X7 ion channels. The yeast homolog, Stt4p, is also important in regulating the conversion of phosphatidylserine to phosphatidylethanolamine at the ER and Golgi interface. Mammalian PI4KIIIalpha is highly expressed in the nervous system. Length = 311

>gnl|CDD|237847 PRK14879, PRK14879, serine/threonine protein kinase; Provisional

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 30/138 (21%)

Query: 397 VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFF 456
           V VP +++      I+ MEY+ G  +     ++  G++   L R  +   + ++ S G  
Sbjct: 61  VNVPAVYFVDPENFIIVMEYIEGEPLK--DLINSNGMEELELSR-EIGRLVGKLHSAGII 117

Query: 457 HADPHPGNIAVDDVNGGRLIFYDFGM--------------------MGSISPNIREGLLE 496
           H D    N+    ++GG++   DFG+                    + S  P+  E L E
Sbjct: 118 HGDLTTSNMI---LSGGKIYLIDFGLAEFSKDLEDRAVDLHVLLRSLESTHPDWAEELFE 174

Query: 497 AF---YG-IYEKDADKVL 510
           AF   Y  +  + A++VL
Sbjct: 175 AFLEGYREVMGEKAEEVL 192

Length = 211

>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 16/118 (13%)

Query: 372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLD 429
            +  D  +E A  +L A        + VP +           L ME++ G      ++LD
Sbjct: 33  EKGADREREVAILQLLARK-----GLPVPKVLASGESDGWSYLLMEWIEG------ETLD 81

Query: 430 ELGVDRKRLGRYAVESYLE---QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG 484
           E+  + K      +   L    Q+      H D HPGNI VDD     +I +++   G
Sbjct: 82  EVSEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG 139

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	766
COG0661	517	AarF Predicted unusual protein kinase [General fun	100.0
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	100.0
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	100.0
KOG1235	538	consensus Predicted unusual protein kinase [Genera	100.0
KOG1236	565	consensus Predicted unusual protein kinase [Genera	100.0
KOG1234	363	consensus ABC (ATP binding cassette) 1 protein [Ge	100.0
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	99.94
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.8
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.78
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.77
smart00090	237	RIO RIO-like kinase.	99.68
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.68
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.68
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.68
KOG0605	550	consensus NDR and related serine/threonine kinases	99.67
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.67
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.65
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.64
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.62
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.62
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.61
PRK14879	211	serine/threonine protein kinase; Provisional	99.6
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.59
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.59
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.58
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.58
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.58
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.58
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.58
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.58
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.57
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.57
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.57
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.57
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.56
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.56
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.55
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.55
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.55
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.55
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.55
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.55
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.55
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.55
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.55
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.55
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.55
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.54
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.54
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.54
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.54
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.54
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.54
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.54
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.54
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.53
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.53
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.53
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.53
KOG0578	550	consensus p21-activated serine/threonine protein k	99.53
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.53
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.53
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.52
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.52
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.52
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.52
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.52
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.52
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.52
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.52
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.52
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.51
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.51
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.51
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.51
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.51
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.5
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	99.5
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.5
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.5
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.5
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.5
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.49
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.49
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.49
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.49
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.49
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.49
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.49
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.49
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.48
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.48
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.48
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.48
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.48
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.47
PTZ00267	478	NIMA-related protein kinase; Provisional	99.47
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.47
PRK09188	365	serine/threonine protein kinase; Provisional	99.47
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.47
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.47
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.47
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.47
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.47
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.47
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.46
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.46
PTZ00283	496	serine/threonine protein kinase; Provisional	99.46
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.46
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.46
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.46
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.46
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.46
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.46
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.45
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.45
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.45
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.45
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.45
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.45
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.45
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.45
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.44
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.44
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.44
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.44
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.44
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.44
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.44
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.44
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.44
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.43
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.43
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.43
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.43
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.43
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.43
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.43
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.43
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.43
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.42
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.42
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.42
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.42
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.42
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.42
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.42
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.42
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.42
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.42
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.42
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.42
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.42
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.41
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.41
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.41
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.41
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.41
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.41
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.41
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.41
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.41
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.41
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.41
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.41
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.41
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.41
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.4
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.4
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.4
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.4
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.4
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.4
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.39
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.39
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.39
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.39
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.39
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.39
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.39
PHA03211	461	serine/threonine kinase US3; Provisional	99.39
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.39
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.39
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.39
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.39
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.38
KOG0198	313	consensus MEKK and related serine/threonine protei	99.38
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.38
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.38
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.38
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.38
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.38
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.38
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.38
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.38
PHA03212	391	serine/threonine kinase US3; Provisional	99.38
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.38
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.38
PHA02988	283	hypothetical protein; Provisional	99.38
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.38
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.38
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.38
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.38
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.37
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.37
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.37
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.37
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.37
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.37
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.37
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.37
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.37
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.37
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.37
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.37
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.37
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.37
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.37
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.37
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.36
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.36
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.36
PHA03209	357	serine/threonine kinase US3; Provisional	99.36
PTZ00284	467	protein kinase; Provisional	99.36
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.36
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.36
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.36
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.36
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.36
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.36
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.35
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.35
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.35
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.35
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.35
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.35
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.35
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.35
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.35
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.35
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.35
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.35
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.35
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.34
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.34
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.34
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.34
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.34
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.34
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.34
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.34
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.34
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.34
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.34
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.34
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.34
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.34
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.34
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.34
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.34
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.34
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.34
PHA03207	392	serine/threonine kinase US3; Provisional	99.33
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.33
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.33
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.33
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.33
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.33
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.32
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.32
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.32
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.32
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.32
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.32
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.32
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.32
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.32
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.32
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.32
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.32
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.32
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.32
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.31
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.31
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.31
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.31
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.31
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.31
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.31
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.31
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.31
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	99.31
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.31
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.3
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.3
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.3
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.3
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.3
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.3
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.3
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.3
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.3
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.3
PTZ00036	440	glycogen synthase kinase; Provisional	99.3
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.3
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.29
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.29
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.29
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.29
PRK12274	218	serine/threonine protein kinase; Provisional	99.29
KOG0610	459	consensus Putative serine/threonine protein kinase	99.29
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.29
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.28
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.28
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.28
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.28
KOG0589	426	consensus Serine/threonine protein kinase [General	99.28
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.28
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.28
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.27
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.27
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.27
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.27
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.27
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.27
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.27
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.27
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.27
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.27
PHA02882	294	putative serine/threonine kinase; Provisional	99.27
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.26
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.26
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.26
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.26
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.26
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.25
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.25
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.25
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.25
PLN00009	294	cyclin-dependent kinase A; Provisional	99.25
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.25
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.24
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.24
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.24
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.24
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.24
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.23
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.23
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	99.23
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.23
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.23
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.22
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.21
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.21
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.21
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.21
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.21
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.21
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.2
PRK10345	210	hypothetical protein; Provisional	99.2
PHA03210	501	serine/threonine kinase US3; Provisional	99.2
KOG3653	534	consensus Transforming growth factor beta/activin	99.19
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.19
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.19
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.19
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.19
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.18
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.18
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.18
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.16
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.16
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.15
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.15
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.13
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.13
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.13
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.13
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.12
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.12
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.11
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.11
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.1
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.1
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.09
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.09
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.08
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.07
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.06
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.05
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.05
KOG0586	596	consensus Serine/threonine protein kinase [General	99.05
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.05
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.04
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.03
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.03
COG0478	304	RIO-like serine/threonine protein kinase fused to	99.01
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.01
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.01
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.0
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.0
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	98.98
KOG4717	864	consensus Serine/threonine protein kinase [Signal	98.98
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	98.97
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	98.96
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	98.94
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	98.94
KOG3087	229	consensus Serine/threonine protein kinase [General	98.92
KOG2052	513	consensus Activin A type IB receptor, serine/threo	98.92
KOG0596	677	consensus Dual specificity; serine/threonine and t	98.91
KOG0695	593	consensus Serine/threonine protein kinase [Signal	98.91
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	98.9
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	98.9
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	98.87
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	98.87
KOG1027	903	consensus Serine/threonine protein kinase and endo	98.87
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.87
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.85
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	98.82
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	98.79
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	98.78
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	98.78
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	98.7
KOG1152	772	consensus Signal transduction serine/threonine kin	98.7
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.7
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	98.69
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	98.64
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	98.64
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	98.62
KOG0584	632	consensus Serine/threonine protein kinase [General	98.62
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.59
COG0515	384	SPS1 Serine/threonine protein kinase [General func	98.54
PF01636	239	APH: Phosphotransferase enzyme family This family	98.52
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	98.51
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	98.5
PRK10593	297	hypothetical protein; Provisional	98.48
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	98.46
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.45
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.44
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	98.42
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	98.41
PRK05231	319	homoserine kinase; Provisional	98.35
KOG2270	520	consensus Serine/threonine protein kinase involved	98.29
PLN00181	793	protein SPA1-RELATED; Provisional	98.23
PRK09550	401	mtnK methylthioribose kinase; Reviewed	98.21
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	98.21
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	98.2
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.19
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	98.11
PLN02756	418	S-methyl-5-thioribose kinase	98.1
PRK12396	409	5-methylribose kinase; Reviewed	98.06
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	97.94
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	97.88
PRK06148	1013	hypothetical protein; Provisional	97.87
KOG2268	465	consensus Serine/threonine protein kinase [Signal	97.83
PRK09902	216	hypothetical protein; Provisional	97.81
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.75
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.74
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	97.68
PRK06149	972	hypothetical protein; Provisional	97.68
PLN02876	822	acyl-CoA dehydrogenase	97.67
KOG1290	590	consensus Serine/threonine protein kinase [Signal	97.5
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	97.48
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.31
COG2334	331	Putative homoserine kinase type II (protein kinase	97.22
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	97.21
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	97.05
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.02
PRK11768	325	serine/threonine protein kinase; Provisional	97.0
PLN02236	344	choline kinase	96.97
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	96.95
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	96.89
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	96.87
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	96.71
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	96.51
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	96.43
KOG0590	601	consensus Checkpoint kinase and related serine/thr	96.34
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	96.12
KOG0606	1205	consensus Microtubule-associated serine/threonine	95.36
PF04655	253	APH_6_hur: Aminoglycoside/hydroxyurea antibiotic r	95.33
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	95.0
KOG2269	531	consensus Serine/threonine protein kinase [Signal	94.97
PRK10271	188	thiK thiamine kinase; Provisional	94.79
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	93.59
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	93.1
COG4857	408	Predicted kinase [General function prediction only	92.92
PTZ00384	383	choline kinase; Provisional	92.48
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	92.15
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	91.71
PTZ00296	442	choline kinase; Provisional	91.64
PF07914	414	DUF1679: Protein of unknown function (DUF1679); In	91.21
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	90.2
KOG0590	601	consensus Checkpoint kinase and related serine/thr	89.03
PF02958	294	EcKinase: Ecdysteroid kinase; InterPro: IPR004119	88.27
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	87.98
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	84.51
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	83.22
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	82.99

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=100.00  E-value=1.3e-85  Score=746.69  Aligned_cols=387  Identities=43%  Similarity=0.772  Sum_probs=368.5

Q ss_pred             HHHHHHHHHHHHHHhhCCceeehhhHHhhCccCCCHHHHHHHHhhhhCCCCCChHHHHHHHHHHhCCChhhhhhccCccc
Q 004234          221 RRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEP  300 (766)
Q Consensus       221 ~~~~~a~~lr~~le~lGptfIKlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~P  300 (766)
                      ++...+++|+++|++|||||||+||+||||+|++|++|+++|++|||+|||+|+++++++|++++|.+++++|++|+++|
T Consensus        53 ~~~~~~~rL~~~L~~LGPtfIK~GQ~LStR~Dl~p~e~~~eL~~LQD~vpp~~~~~~~~iie~eLG~~iee~F~eF~~~P  132 (517)
T COG0661          53 LREKRAERLRLALEELGPTFIKLGQILSTRPDLVPPEYAEELAKLQDRVPPFPFEEAERIIEEELGRPIEELFSEFEPEP  132 (517)
T ss_pred             HhHhHHHHHHHHHHHhCCchhhhhhHHhcCccccCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhCCCHHHHHHHcCCCc
Confidence            34456899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 004234          301 IAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ  379 (766)
Q Consensus       301 IgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~  379 (766)
                      +|+||+||||+|++ +|++|||||||||+++.+..|+.+|+.++++++++.|.  +..+++.++++|+.+++..|+||++
T Consensus       133 iAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~--~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         133 IASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPG--GRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             hhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCc--cccCChHHHHHHHHHHHHHHhCHHH
Confidence            99999999999999 69999999999999999999999999999999998774  3468999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccC
Q 004234          380 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHAD  459 (766)
Q Consensus       380 EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~GffHaD  459 (766)
                      ||+|+++|++||++++.|+||+|||+||+++||||||++|++++++..++..|.|++.++..++++|++|++++||||||
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~~dgffHaD  290 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLRDGFFHAD  290 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Q 004234          460 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSF  539 (766)
Q Consensus       460 pHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~~~  539 (766)
                      ||||||+|+.  +|+++++||||++++++++|..++++++++.++|++.+++.+.++|.+++..|...+..+++.+++.+
T Consensus       291 pHpGNi~v~~--~g~i~~lDfGi~g~l~~~~r~~l~~~~~a~~~rD~~~v~~~~~~~G~~~~~~~~~~~~~~i~~~~~~~  368 (517)
T COG0661         291 PHPGNILVRS--DGRIVLLDFGIVGRLDPKFRRYLAELLLAFLNRDYDRVAELHVELGYVPPDTDRDPLAAAIRAVLEPI  368 (517)
T ss_pred             CCccceEEec--CCcEEEEcCcceecCCHHHHHHHHHHHHHHHhhCHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHhh
Confidence            9999999996  89999999999999999999999999999999999999999999999999999999999988887765


Q ss_pred             HHHHHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCchhhhhhhhhhhHhhhhcccCCCC
Q 004234          540 EERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRF  619 (766)
Q Consensus       540 ~~~l~~~r~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~~~~ll~Ral~~lEGi~~~LdP~~  619 (766)
                      .                   +.++.        +++++.+..+++++++++++++|++++++.|++.++||++++|||++
T Consensus       369 ~-------------------~~~~~--------~~~~~~~~~~~~~~~~~~~~r~p~~l~ll~r~~~~vEg~~~~ldp~~  421 (517)
T COG0661         369 Y-------------------GKPLE--------EISFGEILDKLFEVARRFPMRLPPELVLLQRTLLLVEGVGRQLDPRF  421 (517)
T ss_pred             h-------------------CCChh--------hccHHHHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHHHHHhhCccc
Confidence            3                   33432        46788999999999999999999999999999999999999999999


Q ss_pred             ChHHhHHHHHHHHHHhhhh
Q 004234          620 DITEIAKPYAMELLKFREA  638 (766)
Q Consensus       620 ~i~~~a~P~~~~~l~~~~~  638 (766)
                      |++..+.||+.+++..+..
T Consensus       422 ~~~~~a~p~~~~~~~~~~~  440 (517)
T COG0661         422 NLWAVAQPLLAKWLKKQLS  440 (517)
T ss_pred             cHHHHhhHHHHHHHHHhhh
Confidence            9999999999999886654

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=100.00  E-value=2.4e-84  Score=740.70  Aligned_cols=416  Identities=31%  Similarity=0.551  Sum_probs=380.5

Q ss_pred             HHHHHHHHHHHhhCCceeehhhHHhhCccCCCHHHHHHHHhhhhCCCCCChHHHHHHHHHHhCCChhhhhhccCcccccc
Q 004234          224 ALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAA  303 (766)
Q Consensus       224 ~~a~~lr~~le~lGptfIKlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgs  303 (766)
                      ..|++||.+|++|||+|||+||+||||+|++|++|+++|++|||+|||+|+++++++++++||.+++++|.+||++|+|+
T Consensus        50 ~~~~rlr~aLe~LGp~fIKlGQ~LStR~DllP~~~~~eL~~Lqd~vpp~~~~~~~~~ie~elG~~~~~~F~~fd~~Plas  129 (537)
T PRK04750         50 PRGERLRLALEELGPIFVKFGQMLSTRRDLFPPDIADELALLQDRVPPFDGALARAIIEKALGGPVEEWFDDFDIKPLAS  129 (537)
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHcCcccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHhcChhhhcC
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEEEee-c-CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 004234          304 ASLGQVHRARL-K-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEA  381 (766)
Q Consensus       304 aSiGQVhrA~l-~-G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA  381 (766)
                      ||+||||+|++ + |++|||||+||++.+.|+.|+++|+.++.+++++.|.  ...+++.++++|+.+.+.+|+||.+|+
T Consensus       130 aSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~--~~~l~~~~~v~e~~~~l~~ElD~~~Ea  207 (537)
T PRK04750        130 ASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPD--GRRLKPREVVAEFEKTLHDELDLMREA  207 (537)
T ss_pred             CCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcc--cccCCHHHHHHHHHHHHHHhhCHHHHH
Confidence            99999999999 5 9999999999999999999999999999999998875  345789999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCC
Q 004234          382 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPH  461 (766)
Q Consensus       382 ~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~GffHaDpH  461 (766)
                      +|+.+|+++|.+.+.++||+|||+||+++||||||++|++++++..+...+.+++.+++.+++.|+.|+|++||||+|||
T Consensus       208 ~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif~~GffHaDpH  287 (537)
T PRK04750        208 ANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFRDGFFHADMH  287 (537)
T ss_pred             HHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCeeeCCCC
Confidence            99999999999999999999999999999999999999999998777788899999999999999999999999999999


Q ss_pred             CCcEEEeecCCC----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          462 PGNIAVDDVNGG----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       462 PGNILV~~~~~g----~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      ||||+++.  +|    +++++|||+++.+++++|+.+++++.|+.++|++.+++.+.++|.+.+..|...++.++..+++
T Consensus       288 PGNIlv~~--~g~~~~~i~llDFGivg~l~~~~r~~l~~~~~a~~~~D~~~v~~~~~~~g~~~~~~~~~~l~~~i~~~~~  365 (537)
T PRK04750        288 PGNIFVSY--DPPENPRYIALDFGIVGSLNKEDKRYLAENFLAFFNRDYRRVAELHVESGWVPPDTRVEELEFAIRAVCE  365 (537)
T ss_pred             hHHeEEec--CCCCCCeEEEEecceEEECCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence            99999985  55    9999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCchhhhhhhhhhhHhhhhcccCC
Q 004234          538 SFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDP  617 (766)
Q Consensus       538 ~~~~~l~~~r~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~~~~ll~Ral~~lEGi~~~LdP  617 (766)
                      .|.                   ..|++        +++++.++.++++++++|++++|++++++.|+++++||++++|||
T Consensus       366 ~~~-------------------~~~l~--------~i~~~~~l~~l~~~~r~~~~~ip~~l~ll~ktl~~lEG~~r~LdP  418 (537)
T PRK04750        366 PIF-------------------DKPLA--------EISFGHVLLRLFNTARRFNVEIQPQLVLLQKTLLNVEGLGRQLDP  418 (537)
T ss_pred             HHh-------------------CCCcc--------cccHHHHHHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHhCC
Confidence            763                   34554        467889999999999999999999999999999999999999999


Q ss_pred             CCChHHhHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004234          618 RFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQR  677 (766)
Q Consensus       618 ~~~i~~~a~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~l~~~l~~  677 (766)
                      +||+++.|+||+++++.++. ++....+.+.+.+..+...   +.++|.   .+.++++.
T Consensus       419 ~~d~~~~a~p~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~lP~---~l~~~l~~  471 (537)
T PRK04750        419 QLDLWKTAKPFLERWMKEQV-GPRALVRALKEEAPFWAEK---LPELPR---LVHDSLRQ  471 (537)
T ss_pred             CCCHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHH---HHHhHH---HHHHHHHh
Confidence            99999999999999998766 4444555555544433322   233444   55566664

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=100.00  E-value=2.5e-77  Score=673.65  Aligned_cols=383  Identities=36%  Similarity=0.628  Sum_probs=360.2

Q ss_pred             HHHHHHHHHHHhhCCceeehhhHHhhCccCCCHHHHHHHHhhhhCCCCCChHHHHHHHHHHhCCChhhhhhccCcccccc
Q 004234          224 ALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAA  303 (766)
Q Consensus       224 ~~a~~lr~~le~lGptfIKlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgs  303 (766)
                      ..|++++++|++|||+|||+||++|||+|++|++||++|++|||++||+|+++++++++++||.+++++|.+||++|+|+
T Consensus        48 ~~~~~l~~~l~~lGp~fiKlGQ~lS~r~dllp~~~~~~L~~Lqd~v~p~~~~~~~~~l~~elg~~~~~~F~~fd~~plas  127 (437)
T TIGR01982        48 SRGERLRLALEELGPTFIKFGQTLSTRADLLPADIAEELSLLQDRVPPFDFKVARKVIEAALGGPLEELFAEFEEKPLAA  127 (437)
T ss_pred             cHHHHHHHHHHHcCchhHHHhHHHHhCcccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCcCHHHHHhhCCCcceee
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 004234          304 ASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA  382 (766)
Q Consensus       304 aSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~  382 (766)
                      ||+||||+|++ +|++||||||||++.+.+..|+.+|+.++.+++++.|..  ..+++.++++|+...+.+|+||.+||+
T Consensus       128 aSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~l~~Eldf~~Ea~  205 (437)
T TIGR01982       128 ASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDS--RRLRPTEVVKEFEKTLRRELDLRREAA  205 (437)
T ss_pred             eehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccc--cccCHHHHHHHHHHHHHHHHCHHHHHH
Confidence            99999999999 799999999999999999999999999999999987653  356899999999999999999999999


Q ss_pred             HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCC
Q 004234          383 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHP  462 (766)
Q Consensus       383 Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~GffHaDpHP  462 (766)
                      |+.+|++++++.+.+++|++|+++|++++|||||++|.+++++......+.++..++..++..++.|+|.+|+||+||||
T Consensus       206 n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~~~g~~H~D~hP  285 (437)
T TIGR01982       206 NASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFFHADLHP  285 (437)
T ss_pred             HHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCceeCCCCc
Confidence            99999999999999999999999999999999999999999987666666788899999999999999999999999999


Q ss_pred             CcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 004234          463 GNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEER  542 (766)
Q Consensus       463 GNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~~~~~~  542 (766)
                      |||++++  +|+++++|||+++.++++.+..+.+++.++..+|++.+++.+.++|...+..|...+..++..+++.|.  
T Consensus       286 gNilv~~--~g~i~liDfG~~~~l~~~~r~~l~~l~~a~~~~D~~~l~~~l~~~g~~~~~~d~~~~~~~~~~~~~~~~--  361 (437)
T TIGR01982       286 GNIFVLK--DGKIIALDFGIVGRLSEEDRRYLAEILYGFLNRDYRRVAEVHFDAGYVPSDTDMAEFEQAIRAIGEPIF--  361 (437)
T ss_pred             ccEEECC--CCcEEEEeCCCeeECCHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHh--
Confidence            9999975  899999999999999999999999999999999999999999999999999999999999988887763  


Q ss_pred             HHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCchhhhhhhhhhhHhhhhcccCCCCChH
Q 004234          543 LAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDIT  622 (766)
Q Consensus       543 l~~~r~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~~~~ll~Ral~~lEGi~~~LdP~~~i~  622 (766)
                                       +.++.        +.++++++.++++++++|++++|++|+++.|+++++||+++.|||+||++
T Consensus       362 -----------------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~r~l~~leg~~~~L~p~~~~~  416 (437)
T TIGR01982       362 -----------------GQPLK--------EISVGRLLAGLFKITRDFNMELQPQLLLLQKTLLTVEGVGRQLDPDLNMW  416 (437)
T ss_pred             -----------------CCChh--------hCCHHHHHHHHHHHHHHCCccCCHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence                             12322        35677889999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhhh
Q 004234          623 EIAKPYAMELLKFRE  637 (766)
Q Consensus       623 ~~a~P~~~~~l~~~~  637 (766)
                      ++++||+.+++..+.
T Consensus       417 ~~~~p~~~~~~~~~~  431 (437)
T TIGR01982       417 KVAEPFVKRWIRKRL  431 (437)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999987654

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=100.00  E-value=2.1e-67  Score=595.65  Aligned_cols=383  Identities=42%  Similarity=0.638  Sum_probs=318.1

Q ss_pred             HHHHHHHHHHHhhCCceeehhhHHhhCccCCCHHHHHHHHhhhhCCCCCChHHHHHHHHHHhCCChhhhhhccCcccccc
Q 004234          224 ALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAA  303 (766)
Q Consensus       224 ~~a~~lr~~le~lGptfIKlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgs  303 (766)
                      ..|++|+++++.|||+|||+||.+|||+|++|+||.++|+.|||++||+|++++.+++++|+|.+++++|.+||++|||+
T Consensus        92 ~~a~~L~e~~~~nGg~yIKlGQ~lst~~dllP~Eyv~~L~~LqD~~Pp~~~ee~~~i~e~ElG~~ie~if~~f~~~piaa  171 (538)
T KOG1235|consen   92 SAAERLLELFLRNGGTYIKLGQHLSTRPDLLPKEYVKTLSELQDQAPPFPWEEAFKIFEEELGAPIEDIFSEFDEEPIAA  171 (538)
T ss_pred             HHHHHHHHHHHHcCCeEEEechhhccccccCcHHHHHHHHHHhccCCCCCHHHHHHHHHHHhCCCHHHHHHhcCcchhhh
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 004234          304 ASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA  382 (766)
Q Consensus       304 aSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~  382 (766)
                      ||+||||+|++ +|+.|||||||||+++.+..|+.+++.++.+++++.|.     +++..+++|+.+.+.+|+||.+||+
T Consensus       172 ASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~-----~~~~~lvdE~~~~L~~ELDF~~EA~  246 (538)
T KOG1235|consen  172 ASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPD-----FDLVWLVDEIAKSLPQELDFTKEAK  246 (538)
T ss_pred             cchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcC-----CchhhHHHHHHhhhHhhcchHHHHH
Confidence            99999999999 79999999999999999999999999999999999886     4699999999999999999999999


Q ss_pred             HHHHHHHhcCCCC---ccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccC
Q 004234          383 NAELFASNFKDMD---YVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHAD  459 (766)
Q Consensus       383 Nl~~f~~~f~~~~---~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~GffHaD  459 (766)
                      |+++|+++|++.+   .|+||+|||++|+++|||||||+|++++|+..++..|+++..++..+.++|++|||.+||||||
T Consensus       247 Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~~~qIf~~GffHaD  326 (538)
T KOG1235|consen  247 NAERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAIDKRGISPHDILNKLVEAYLEQIFKTGFFHAD  326 (538)
T ss_pred             hHHHHHHHHHhcccccceeCCeehhhcCcceEEEEEecCCccCCCHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCccCC
Confidence            9999999999988   7999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEeec--CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          460 PHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       460 pHPGNILV~~~--~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      ||||||+|++.  .+++++++|||+++.+++..|..|++++++++..|...|.+...++|... +.+...+..++.. +.
T Consensus       327 PHPGNilv~~~~~~~~~ivllDhGl~~~is~~~r~~~~~~~~a~~~~d~~~~~~~~~~~g~~~-d~~~~~fa~~l~~-~~  404 (538)
T KOG1235|consen  327 PHPGNILVRPNPEGDEEIVLLDHGLYAVISHKTRKDYAELWLALVFEDEKAMQALAEQLGLGL-DDLYPLFATALTG-RP  404 (538)
T ss_pred             CCCCcEEEecCCCCCccEEEEcccccccccHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccc-chhhhhhHHHHhC-Cc
Confidence            99999999952  36789999999999999999999999999999977777777777777654 3333333322211 00


Q ss_pred             HHHHHHH-HHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCchhhhhhhhhhhHhhhhcccC
Q 004234          538 SFEERLA-AQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLD  616 (766)
Q Consensus       538 ~~~~~l~-~~r~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~~~~ll~Ral~~lEGi~~~Ld  616 (766)
                       +..... .+.+.         +  ....++... ......+.+..+...+.    ++|..+.++.|+...+.|+...+.
T Consensus       405 -~~s~~~~~~~~~---------~--~~~~~~~~~-~~~~~~~~~~~~~~~L~----~~p~~i~li~k~~~l~r~~~~~l~  467 (538)
T KOG1235|consen  405 -WDSVIGAGITKY---------L--KGLEEDADE-NQKIASAKFPGISQLLR----RMPREILLILKTNDLLRGLSSNLG  467 (538)
T ss_pred             -hhhccccchhhh---------h--hhhhhhhhh-HHHHHHHHhhHHHHHHH----hchHhhhhhcccHHHHHhHHHHhc
Confidence             000000 00000         0  000000011 11222333334443333    359999999999999888887775


Q ss_pred             CC----CChHHhHHHHHH
Q 004234          617 PR----FDITEIAKPYAM  630 (766)
Q Consensus       617 P~----~~i~~~a~P~~~  630 (766)
                      -.    +++...++..+.
T Consensus       468 ~~~~~~~~f~~~~~~~~~  485 (538)
T KOG1235|consen  468 IPSSLERSFLEMARLCLR  485 (538)
T ss_pred             cccccchHHHHHHHHHHH
Confidence            44    455566666655

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=100.00  E-value=4e-54  Score=462.38  Aligned_cols=377  Identities=24%  Similarity=0.377  Sum_probs=334.1

Q ss_pred             HHHHHHHHHHHhhCCceeehhhHHhhCccCCCHHHHHHHHhhhhCCCCCChHHHHHHHHHHhCC-ChhhhhhccCccccc
Q 004234          224 ALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGA-PLDDVFERFDVEPIA  302 (766)
Q Consensus       224 ~~a~~lr~~le~lGptfIKlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~-~~eeiF~~fd~~PIg  302 (766)
                      -+.+.|..+||..||||||+|||+|||+|++|+++|.+|++|+.+|+|+++...++.+..++|. .++++|.+|+++|||
T Consensus       119 lW~~~L~kaLE~aGPtFIKLGQWAsTR~DlFs~afC~qLSKLHs~vt~Hs~a~T~k~l~qa~~~~~~~eiF~efn~~PIG  198 (565)
T KOG1236|consen  119 LWLRLLLKALETAGPTFIKLGQWASTRRDLFSKAFCAQLSKLHSNVTPHSFAFTKKKLRQAFGVKKIEEIFSEFNREPIG  198 (565)
T ss_pred             HHHHHHHHHHHhcCCceEEecccccccccccCHHHHHHHHHHhccCCCCchHHHHHHHHHHHCcCcHHHHHHhcCCcccc
Confidence            4578899999999999999999999999999999999999999999999999999999999998 999999999999999


Q ss_pred             ccceeEEEEEeec-----------------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004234          303 AASLGQVHRARLK-----------------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (766)
Q Consensus       303 saSiGQVhrA~l~-----------------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (766)
                      +|||||||+|+++                 .+.|||||.+|+++++|+.|+.||+..|++.+.+ |..  .-.++...++
T Consensus       199 sG~IAQVY~atl~~a~lekd~~~~~~~~~~tq~~AiKv~Hp~V~~~ir~Dl~Il~f~Akl~~~v-P~l--~wL~l~~~vk  275 (565)
T KOG1236|consen  199 SGCIAQVYRATLKTAYLEKDSGKEYVQKLGTQSCAIKVLHPNVEKQIRLDLGILGFGAKLINNV-PDL--SWLSLPLEVK  275 (565)
T ss_pred             cchhhhhhhhhhhHHHhhcccchhhhcCCccceeeeeccCccHHHHHHHHHHHHhhhhhhhhhc-Ccc--ccccCcchHH
Confidence            9999999999861                 1479999999999999999999999999999854 331  2345677788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCC-CHHHHHHHHHH
Q 004234          366 ECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV-DRKRLGRYAVE  444 (766)
Q Consensus       366 E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~-d~~~la~~lv~  444 (766)
                      .|.-.+..++|.++||.|+.+|..||+....|.+|+++..+.++.||+-+|.+|.++.....-..... -.++++..+++
T Consensus       276 qF~v~ln~QvdL~~EA~hL~rF~~NF~~s~~V~fP~P~~~~~~~~vl~E~~~~Gl~v~~~v~~~~~pe~l~kkva~lg~~  355 (565)
T KOG1236|consen  276 QFSVGLNAQVDLRQEALHLPRFTNNFSGSKKVLFPKPIAPLHTDLVLVETYERGLSVLRFVKWKSQPEALVKKVAKLGVN  355 (565)
T ss_pred             HHHHHHHhhcchhhhhhhhHHHHHhcccceeecCCcccccccccceeeeeccccccHHhhhhcccChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998654322211 35678888999


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCC-----------------------------------------CcEEEEeecce
Q 004234          445 SYLEQILSHGFFHADPHPGNIAVDDVNG-----------------------------------------GRLIFYDFGMM  483 (766)
Q Consensus       445 ~~l~qI~~~GffHaDpHPGNILV~~~~~-----------------------------------------g~l~LiDFGlv  483 (766)
                      ++++|++.++|+|+|+|||||++...++                                         .+++++|-|++
T Consensus       356 AllkMl~vDNFvHaDlHPGNVlirf~~t~~~~~~~~~~e~~~~i~~~L~~~~~e~~d~~~~~~~~~~~~P~lvflDtGiv  435 (565)
T KOG1236|consen  356 ALLKMLIVDNFVHADLHPGNVLIRFNKTEDNLRGVHKAEKASAIKRGLEWFRSEVRDARFTDSPDLEYEPTLVFLDTGIV  435 (565)
T ss_pred             HHHHHHHhhcceecccCCCcEEEEecCCCccccccccchhhhHHhhhhhhhhhhhhhhhhhccccccCCCeEEEecchhh
Confidence            9999999999999999999999975434                                         57999999999


Q ss_pred             eccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCC
Q 004234          484 GSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPL  563 (766)
Q Consensus       484 ~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~~~~~~l~~~r~~~~~~~~~~~f~~~l  563 (766)
                      ..+++.++.++..+|.|+++.|...+.+.+++........|.+.|.+.++.++.....            +         
T Consensus       436 ~kLs~qn~~N~l~lF~av~~~~Gy~ag~lml~~Sr~q~~~d~e~F~~kvEklv~~~~s------------t---------  494 (565)
T KOG1236|consen  436 TKLSHQNQMNLLSLFRAVARFDGYDAGELMLERSRQQQCIDPERFARKVEKLVLKARS------------T---------  494 (565)
T ss_pred             hccChhhHHHHHHHHHHHHHhcchhHHHHHHhhcccccCCCHHHHHHHHHHHHHHhhh------------h---------
Confidence            9999999999999999999999999999999987777778999998888877765421            0         


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCchhhhhhhhhhhHhhhhcccCCCCChHHhHHHHH
Q 004234          564 SKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA  629 (766)
Q Consensus       564 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~~~~ll~Ral~~lEGi~~~LdP~~~i~~~a~P~~  629 (766)
                           .+.+..++++++.++++++++|++++.++|+.++-+++++||++++|||++|++....+|+
T Consensus       495 -----~sl~tl~i~~ll~em~tmvreH~V~ids~f~tvvlsilvlEG~gRqLdP~lDl~~~~~~~l  555 (565)
T KOG1236|consen  495 -----KSLRTLNIGDLLSEMFTMVREHHVRIDSNFTTVVLSILVLEGFGRQLDPDLDLFQLRTFLL  555 (565)
T ss_pred             -----cccCcCcHHHHHHHHHHHHHHhheeeccchHHHHHHHHHHhhhccccCCCcchhhhHHHHH
Confidence                 0112457899999999999999999999999999999999999999999999999444443

>KOG1234 consensus ABC (ATP binding cassette) 1 protein [General function prediction only]

Probab=100.00  E-value=3.7e-35  Score=302.34  Aligned_cols=349  Identities=24%  Similarity=0.317  Sum_probs=287.3

Q ss_pred             HhhC-ccCCCHHHHHHHHhhhhCCCCCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEee-cCeeEEEEEe
Q 004234          247 FSTR-VDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQ  324 (766)
Q Consensus       247 lStR-~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l-~G~~VAVKVq  324 (766)
                      ||-+ ..++|+...+.|++.++.+..||..++.+++..++|.+|.+-|++||..|.+++|+||||+|++ +|.+||||+|
T Consensus         2 LSiQD~~ll~p~l~qi~erVrqsAd~MP~~Ql~~vm~~~lG~nW~~Kf~~fd~~P~AaASIGQVHrArl~~g~eVavKiQ   81 (363)
T KOG1234|consen    2 LSIQDGSLLPPTLGQILERVRQSADFMPPKQLEPVMWGELGGNWAQKFSSFDDGPFAAASIGQVHRARLADGPEVAVKIQ   81 (363)
T ss_pred             cccccCCccCHHHHHHHHHhcCccccCChhhhhHHHhhhhchhHHHHHHhhccCccccccHHHHHHHHhcCCCeeeeecC
Confidence            3444 3589999999999999999999999999999999999999999999999999999999999999 7999999999


Q ss_pred             cCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee
Q 004234          325 RPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW  404 (766)
Q Consensus       325 rP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~  404 (766)
                      +||+.+.|+.|+..+..++++-.- .|+.    .-+...++-.++.+..|+||.+||..+.+|+..+++++.++||.|+.
T Consensus        82 YPGva~sI~SD~~nl~~lLn~s~l-lPkG----LFLd~~i~~ArkEL~~ECDYqrEA~~~~kFr~LLs~~p~f~VP~Vv~  156 (363)
T KOG1234|consen   82 YPGVARSIDSDANNLSRLLNFSGL-LPKG----LFLDVLIEVARKELKWECDYQREAASALKFRPLLSDDPNFYVPRVVD  156 (363)
T ss_pred             CCchhhhccCcHHHHHHHHhhccc-cccc----ccHHHHHHHHHHhcccccchHHHHHHHhhhHHHhcCCCCcchhHHHH
Confidence            999999999999999998876543 3331    12455667778889999999999999999999999999999999999


Q ss_pred             ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004234          405 EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (766)
Q Consensus       405 e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (766)
                      ++||.++++||++.|.++.....+.+  ..+..|+..++..+++.||...|++.||+.+|++++. ...+|.|+|||.++
T Consensus       157 Elct~rvlt~el~~G~pid~~~~~sQ--~~rn~i~~~~l~lcLrEif~f~fMQTDPNWsNFly~~-~tk~i~LlDFGAsr  233 (363)
T KOG1234|consen  157 ELCTVRVLTLELGQGLPIDKTAKLSQ--ETRNYIGYKLLELCLREIFEFRFMQTDPNWSNFLYNG-RTKKIELLDFGASR  233 (363)
T ss_pred             hhccchhhhhhhhcCccchhhhcccH--HHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHhccCC-CcceEEEEeccccc
Confidence            99999999999999999987644332  3578899999999999999999999999999999985 56789999999999


Q ss_pred             ccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCc
Q 004234          485 SISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLS  564 (766)
Q Consensus       485 ~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~~~~~~l~~~r~~~~~~~~~~~f~~~l~  564 (766)
                      .+++++...|++++.+...+|.+.+.+--.++|+++...  ...-.|      ...+.... ..+.-.....++|++   
T Consensus       234 ~y~~~F~d~Y~~~~~aaa~~dr~~v~e~S~~lgfLtg~E--s~~m~D------AHv~sv~i-lgepfa~~~pydF~~---  301 (363)
T KOG1234|consen  234 EYGEKFIDKYIRLLKAAADRDREGVIEMSRELGFLTGYE--SKVMED------AHVESVMI-LGEPFASDGPYDFGD---  301 (363)
T ss_pred             cccHHHHHHHHHHHHHHHhcchHHHHHHHHHhcccccch--HHHHHH------HhhhHhhh-ccccccCCCCcCcCc---
Confidence            999999999999999999999999999999999987532  211111      11111000 000000112334433   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCc-hhhhhhhhhhhHhhhhcccCCCCChHHh
Q 004234          565 KEEKIEKKKQRLAAIGEDLLAIAADQPFRFPA-TFTFVVRAFSVLDGIGKGLDPRFDITEI  624 (766)
Q Consensus       565 ~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~-~~~ll~Ral~~lEGi~~~LdP~~~i~~~  624 (766)
                               +.+..-+.+++.++.+|++..|| +-..+.|-+...-=+|..|...+.-.+.
T Consensus       302 ---------q~~t~ri~~lipvmL~hRL~pPPeEtYsLHRklsG~fL~cakl~A~v~C~~l  353 (363)
T KOG1234|consen  302 ---------QTVTDRIQNLIPVMLRHRLCPPPEETYSLHRKLSGAFLLCAKLGATVPCRDL  353 (363)
T ss_pred             ---------cHHHHHHHhhhHHHHhccCCCCcHHHHHHHHHhhhHHHHHHHhcCCCcHHHH
Confidence                     34455567778888899998876 7778999998888888888887765443

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=99.94  E-value=3.5e-27  Score=221.30  Aligned_cols=118  Identities=49%  Similarity=0.820  Sum_probs=112.8

Q ss_pred             HHhCCChhhhhhccCcccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchH
Q 004234          283 EELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV  361 (766)
Q Consensus       283 ~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~  361 (766)
                      ++||.+++++|++||++|+||||+||||+|++ +|++||||||||++.+.+..|+.+|+.++++++++.+..   .+++.
T Consensus         1 e~lG~~~~~~F~~fd~~PlasASiaQVh~a~l~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~---~~~~~   77 (119)
T PF03109_consen    1 EELGKPIDEIFDEFDPEPLASASIAQVHRARLKDGEEVAVKVQRPGIEEQIEADLRILRRLARLLERLPPFR---RLDLE   77 (119)
T ss_pred             CCcCCCHHHHHHHCCcchhhheehhhheeeeecccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHccccc---ccCHH
Confidence            47999999999999999999999999999999 799999999999999999999999999999999887643   67999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceee
Q 004234          362 AIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIF  403 (766)
Q Consensus       362 ~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~  403 (766)
                      .+++|+.+.+.+|+||++||+|+++|+++|.+.+.|+||+||
T Consensus        78 ~~~~e~~~~l~~ElDf~~Ea~n~~~~~~~~~~~~~v~vP~vy  119 (119)
T PF03109_consen   78 EIVDEFRDSLLEELDFRREAANLERFRKNFADSPRVYVPKVY  119 (119)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCEecCCCC
Confidence            999999999999999999999999999999999999999987

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.80  E-value=6.4e-19  Score=177.42  Aligned_cols=180  Identities=17%  Similarity=0.177  Sum_probs=117.5

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .+||+|++|+||+|++ +|+.||||+.+|+.... ..+.+.+.....+...      ....++..+..+         .+
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---------~~   66 (190)
T cd05145           3 GCISTGKEANVYHARTGDGEELAVKIYKTSTLSF-KDRDKYIEGDPRFRSR------YSKSNPRKLVFA---------WA   66 (190)
T ss_pred             ceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceE-eeHHHHhcCCcccccc------cccCCHHHHHHH---------HH
Confidence            5899999999999999 69999999999985432 1111111100000000      001223332222         23


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCH---HHHHHHHHHHHHHHHHh-C
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR---KRLGRYAVESYLEQILS-H  453 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~---~~la~~lv~~~l~qI~~-~  453 (766)
                      ..|.+|+.++..     +++.+|.++..  ...+|||||++|..+.... +.....+.   ..++..++.. +.++|. .
T Consensus        67 ~~E~~~l~~l~~-----~~i~~p~~~~~--~~~~lVmE~~~g~~~~~~~-l~~~~~~~~~~~~i~~~l~~~-l~~lH~~~  137 (190)
T cd05145          67 EKEFRNLKRLYE-----AGVPVPEPILL--KKNVLVMEFIGDDGSPAPR-LKDVPLEEEEAEELYEQVVEQ-MRRLYQEA  137 (190)
T ss_pred             HHHHHHHHHHHh-----CCCCCceEEEe--cCCEEEEEEecCCCchhhh-hhhccCCHHHHHHHHHHHHHH-HHHHHHhC
Confidence            578889988864     46778888853  4569999999998544321 22223332   3344444433 667777 9


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l  513 (766)
                      |++|+||||+||+++   +++++|+|||++..++...       ..+++.+|++.+...+
T Consensus       138 givHrDlkP~NIll~---~~~~~liDFG~a~~~~~~~-------~~~~~~~~~~~~~~~~  187 (190)
T cd05145         138 GLVHGDLSEYNILYH---DGKPYIIDVSQAVELDHPN-------ALEFLRRDIRNINRFF  187 (190)
T ss_pred             CEecCCCChhhEEEE---CCCEEEEEcccceecCCCC-------HHHHHHHHHHHHHHHh
Confidence            999999999999997   6889999999999987652       2445667877776654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.78  E-value=4.3e-18  Score=172.07  Aligned_cols=164  Identities=15%  Similarity=0.153  Sum_probs=108.8

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      ..||+|++|+||+|.+ +|++||||+.+|+.......| ..+....++-. .     ....++..+..++         .
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~-~~~~~~~~~~~-~-----~~~~~~~~~~~~~---------~   66 (190)
T cd05147           3 GCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRD-RYVSGEFRFRH-G-----YCKSNPRKMVRTW---------A   66 (190)
T ss_pred             CccccccceEEEEEECCCCCEEEEEEEEecccccccHH-HhhcCCchhhc-c-----ccCCCHHHHHHHH---------H
Confidence            4799999999999999 799999999998864332222 11100011000 0     0122444443332         2


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH-HhCC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI-LSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI-~~~G  454 (766)
                      ..|++|+.++..     +++..|.++.  +...+|||||++|..+.... +....++...+...+.+  ..+.++ |..|
T Consensus        67 ~~E~~~l~~l~~-----~~v~~p~~~~--~~~~~iVmE~i~g~~l~~~~-~~~~~~~~~~~~~i~~qi~~~L~~l~H~~g  138 (190)
T cd05147          67 EKEMRNLKRLVT-----AGIPCPEPIL--LKSHVLVMEFIGDDGWAAPR-LKDAPLSESKARELYLQVIQIMRILYQDCR  138 (190)
T ss_pred             HHHHHHHHHHHH-----CCCCCCcEEE--ecCCEEEEEEeCCCCCcchh-hhcCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            468889988864     3455666663  45569999999997665432 22334566666555533  557777 6899


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (766)
                      ++|+||||+||+++   +++++|+|||++...+..
T Consensus       139 iiHrDlkP~NIli~---~~~v~LiDFG~a~~~~~~  170 (190)
T cd05147         139 LVHADLSEYNLLYH---DGKLYIIDVSQSVEHDHP  170 (190)
T ss_pred             cccCCCCHHHEEEE---CCcEEEEEccccccCCCc
Confidence            99999999999997   478999999999876544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.77  E-value=3.4e-18  Score=185.22  Aligned_cols=186  Identities=18%  Similarity=0.194  Sum_probs=132.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      .-||+||||.||+|++  +|..||||-..-                                  ..+..+..+.+..|+-
T Consensus        16 ~~iG~GsfavVykg~h~~~~~~VAIK~i~~----------------------------------~~l~~k~~e~L~~Ei~   61 (429)
T KOG0595|consen   16 REIGSGSFAVVYKGRHKKSGTEVAIKCIAK----------------------------------KKLNKKLVELLLSEIK   61 (429)
T ss_pred             hhccCcceEEEEEeEeccCCceEEeeeehh----------------------------------hccCHHHHHHHHHHHH
Confidence            4499999999999999  599999996511                                  1112334445566666


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH---HHHHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA---VESYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l---v~~~l~qI~~~  453 (766)
                      +..|.+          +..-|.+-.+. +..+..+||||||+|+.|+++..-. ..+++. .++..   +...++-+++.
T Consensus        62 iLkel~----------H~nIV~l~d~~-~~~~~i~lVMEyC~gGDLs~yi~~~-~~l~e~-t~r~Fm~QLA~alq~L~~~  128 (429)
T KOG0595|consen   62 ILKELK----------HPNIVRLLDCI-EDDDFIYLVMEYCNGGDLSDYIRRR-GRLPEA-TARHFMQQLASALQFLHEN  128 (429)
T ss_pred             HHHhcC----------CcceeeEEEEE-ecCCeEEEEEEeCCCCCHHHHHHHc-CCCCHH-HHHHHHHHHHHHHHHHHHC
Confidence            655553          22223333333 3456789999999999999976432 123322 22222   33457778999


Q ss_pred             CccccCCCCCcEEEeec-CC---CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          454 GFFHADPHPGNIAVDDV-NG---GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       454 GffHaDpHPGNILV~~~-~~---g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|+|||+||.|||+... ..   -.+++.|||+++.+.+..   +    ...+.+.+-||++++...+-...+.|++++.
T Consensus       129 ~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~---~----a~tlcGSplYMAPEV~~~~~YdAKADLWSiG  201 (429)
T KOG0595|consen  129 NIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGS---M----AETLCGSPLYMAPEVIMSQQYDAKADLWSIG  201 (429)
T ss_pred             CeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchh---H----HHHhhCCccccCHHHHHhccccchhhHHHHH
Confidence            99999999999999862 11   469999999999998643   2    3445679999999999998889999999999


Q ss_pred             HHHHHHHHH
Q 004234          530 RTAQFFLNS  538 (766)
Q Consensus       530 ~~i~~~l~~  538 (766)
                      .++..++..
T Consensus       202 ~Ilyq~l~g  210 (429)
T KOG0595|consen  202 TILYQCLTG  210 (429)
T ss_pred             HHHHHHHhC
Confidence            988777643

>smart00090 RIO RIO-like kinase

Probab=99.68  E-value=5.2e-16  Score=162.32  Aligned_cols=186  Identities=19%  Similarity=0.206  Sum_probs=126.4

Q ss_pred             ccccccceeEEEEEe--e-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRAR--L-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~--l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      ++||.|++|+||+|+  . +|++||||+.+++..+....+.        +... .+.......++...         .+.
T Consensus        34 ~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~---------~~~   95 (237)
T smart00090       34 GCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDR--------YVDG-DFRFKYRKINPRKL---------VRL   95 (237)
T ss_pred             CeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhh--------hccc-chhhccCCCCHHHH---------HHH
Confidence            589999999999998  3 6999999999876543211110        0000 00000001122111         123


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHH---HHHHHHHHHHHHHHHh
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK---RLGRYAVESYLEQILS  452 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~---~la~~lv~~~l~qI~~  452 (766)
                      .+..|++++.++..     ..+.+|+++..  +..+|||||++|..+..... .....+..   .++..+ ...+.++|.
T Consensus        96 ~~~~E~~~L~~L~~-----~~i~~p~~~~~--~~~~lV~E~~~g~~L~~~~~-~~~~~~~~~~~~i~~qi-~~~l~~LH~  166 (237)
T smart00090       96 WAEKEFRNLQRLYE-----AGVPVPKPIAW--RRNVLVMEFIGGDGLPAPRL-KDVEPEEEEEFELYDDI-LEEMRKLYK  166 (237)
T ss_pred             HHHHHHHHHHHHHh-----cCCCCCeeeEe--cCceEEEEEecCCccccccc-ccCCcchHHHHHHHHHH-HHHHHHHHh
Confidence            46788999998864     25778888853  45799999999988765421 11222222   333333 345888999


Q ss_pred             CC-ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004234          453 HG-FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP  521 (766)
Q Consensus       453 ~G-ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~  521 (766)
                      +| ++|+|+||+||+++   +++++++|||++...+....       .++..+|...+...+.+.|..+.
T Consensus       167 ~g~iiH~Dikp~NIli~---~~~i~LiDFg~a~~~~~~~~-------~~~~~~d~~~~~~~~~~~~~~~~  226 (237)
T smart00090      167 EGELVHGDLSEYNILVH---DGKVVIIDVSQSVELDHPMA-------LEFLERDIRNIIRFFRRKGVDEL  226 (237)
T ss_pred             cCCEEeCCCChhhEEEE---CCCEEEEEChhhhccCCcch-------HHHHHHHHHHHHHHHHHcCCCcC
Confidence            99 99999999999997   67899999999998877654       35578999999999999988543

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.68  E-value=5.1e-16  Score=161.30  Aligned_cols=143  Identities=18%  Similarity=0.327  Sum_probs=104.7

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      ++++.|.+|+||.+..++..+|||+.+|.....                                 +.+...+...--|.
T Consensus        37 ~~l~~~~f~~v~l~~~~~~~~iiKvf~~~~~~~---------------------------------~~~~~~f~~g~~~e   83 (232)
T PRK10359         37 KVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRT---------------------------------ERFLKSFVKGDYYE   83 (232)
T ss_pred             EEecCCCceEEEEEecCCCcEEEEEechhcCch---------------------------------HHHHHhhhhhHHHH
Confidence            689999999999977778899999998875433                                 00111111122367


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeee--------ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHH
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFW--------EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQI  450 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~--------e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI  450 (766)
                      +||+++.++.+     +++..|..+.        .+++..+|+|||++|.+|.++...     +. .. ...+...+.++
T Consensus        84 ~Ea~~l~rL~~-----~GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~~-----~~-~~-~~~i~~~l~~l  151 (232)
T PRK10359         84 NLIVQTDRVRS-----EGLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPEI-----SE-DV-KAKIKASIESL  151 (232)
T ss_pred             HHHHHHHHHHH-----CCCCcceEeeeecccccccccCCeEEEEEEECCccHHHhhhc-----cH-HH-HHHHHHHHHHH
Confidence            89999998854     4566665552        235679999999999999886432     22 22 22445568999


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (766)
                      |..|++|+|||||||++++  +| ++|+|||.+.....+
T Consensus       152 H~~gi~H~Dikp~Nili~~--~g-i~liDfg~~~~~~e~  187 (232)
T PRK10359        152 HQHGMVSGDPHKGNFIVSK--NG-LRIIDLSGKRCTAQR  187 (232)
T ss_pred             HHcCCccCCCChHHEEEeC--CC-EEEEECCCcccccch
Confidence            9999999999999999985  67 999999999887543

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.68  E-value=8.6e-16  Score=155.20  Aligned_cols=170  Identities=22%  Similarity=0.319  Sum_probs=115.2

Q ss_pred             cccccccceeEEEEEee-cCeeEEEEEecCCccch--HHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDL--FDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~--i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      .++||+|++|+||+|.. +|+.||||+.+++....  ...+.+       ....      ....++         .-..+
T Consensus        20 ~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~-------~~~~------~~~~~~---------~~~~~   77 (198)
T cd05144          20 GNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRD-------YLGD------RKHASW---------LYLSR   77 (198)
T ss_pred             CCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHH-------HHhc------cccchh---------HHHhH
Confidence            36899999999999999 79999999987654211  000000       0000      000001         01123


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCC
Q 004234          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHG  454 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~G  454 (766)
                      ..+..|...+..+..     ..+.+|.++.  ....+++|||++|.++.++...    .....++..++.. +.++|..|
T Consensus        78 ~~~~~E~~~l~~l~~-----~~i~v~~~~~--~~~~~lv~e~~~g~~L~~~~~~----~~~~~~~~~i~~~-l~~lh~~g  145 (198)
T cd05144          78 LAAQKEFAALKALYE-----EGFPVPKPID--WNRHAVVMEYIDGVELYRVRVL----EDPEEVLDEILEE-IVKAYKHG  145 (198)
T ss_pred             HHHHHHHHHHHHHHH-----cCCCCCceee--cCCceEEEEEeCCcchhhcccc----ccHHHHHHHHHHH-HHHHHHCC
Confidence            345666666766644     2356777775  3567999999999998875321    2334455555443 56789999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHH----HHHHHHHhh
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL----LEAFYGIYE  503 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l----~~l~~a~~~  503 (766)
                      ++|+|+||+||++++  +++++++|||+++.++.+.++.+    ...++++++
T Consensus       146 i~H~Dl~p~Nill~~--~~~~~liDfg~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (198)
T cd05144         146 IIHGDLSEFNILVDD--DEKIYIIDWPQMVSTDHPNAEELLDRDVENILRFFR  196 (198)
T ss_pred             CCcCCCCcccEEEcC--CCcEEEEECCccccCCCccHHHHHHHHHHHHHHHHh
Confidence            999999999999985  88999999999999999888876    555555543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.68  E-value=4.5e-17  Score=175.06  Aligned_cols=177  Identities=17%  Similarity=0.216  Sum_probs=127.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..||+|+-|.||++++  +|+.+|+|+.+-++.                                   .++.+++.+|++
T Consensus        85 ~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~-----------------------------------~~~~~Qi~rEl~  129 (364)
T KOG0581|consen   85 GVLGSGNGGTVYKVRHKPTGKIYALKVILLNID-----------------------------------PALQKQILRELE  129 (364)
T ss_pred             hhcccCCCcEEEEEEEcCCCeEEEEEeecccCC-----------------------------------HHHHHHHHHHHH
Confidence            5799999999999999  599999999843332                                   335566777777


Q ss_pred             HHHHHH--HHHHHHHhcCCCCccccceeeeccCC-CeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          377 YTQEAA--NAELFASNFKDMDYVKVPTIFWEYTT-PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       377 f~~EA~--Nl~~f~~~f~~~~~V~vP~v~~e~st-~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      ..++..  ++..|++.|.+             .. ...++||||+|++|+++.... ..++...++.....  ..+.++|
T Consensus       130 il~~~~spyIV~~ygaF~~-------------~~~~isI~mEYMDgGSLd~~~k~~-g~i~E~~L~~ia~~VL~GL~YLh  195 (364)
T KOG0581|consen  130 ILRSCQSPYIVGFYGAFYS-------------NGEEISICMEYMDGGSLDDILKRV-GRIPEPVLGKIARAVLRGLSYLH  195 (364)
T ss_pred             HHhhCCCCCeeeEeEEEEe-------------CCceEEeehhhcCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHh
Confidence            766552  22222222211             23 478999999999999975321 22333333333222  2367788


Q ss_pred             h-CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          452 S-HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       452 ~-~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      + ++++|||+||.||||+.  .|+++|+|||..+.+...    ++..+    .++..||+++-++-+-.+-.+|+++|.-
T Consensus       196 ~~~~IIHRDIKPsNlLvNs--kGeVKicDFGVS~~lvnS----~a~tf----vGT~~YMsPERi~g~~Ys~~sDIWSLGL  265 (364)
T KOG0581|consen  196 EERKIIHRDIKPSNLLVNS--KGEVKICDFGVSGILVNS----IANTF----VGTSAYMSPERISGESYSVKSDIWSLGL  265 (364)
T ss_pred             hccCeeeccCCHHHeeecc--CCCEEeccccccHHhhhh----hcccc----cccccccChhhhcCCcCCcccceecccH
Confidence            4 99999999999999996  899999999999998765    44444    4588999999999888888899999986


Q ss_pred             HHHH
Q 004234          531 TAQF  534 (766)
Q Consensus       531 ~i~~  534 (766)
                      .+-+
T Consensus       266 sllE  269 (364)
T KOG0581|consen  266 SLLE  269 (364)
T ss_pred             HHHH
Confidence            5433

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.67  E-value=6.8e-16  Score=172.04  Aligned_cols=195  Identities=21%  Similarity=0.295  Sum_probs=127.7

Q ss_pred             ccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +|+. ++||.|+||+||.|+-  +|+.+|+|+++.       .++--..                         + -+.+
T Consensus       142 DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkK-------S~M~~~~-------------------------Q-v~hV  188 (550)
T KOG0605|consen  142 DFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKK-------SEMLKKN-------------------------Q-VEHV  188 (550)
T ss_pred             cchhheeeccccceeEEEEEEccCCcEEeeecccH-------HHHHhhh-------------------------h-HHHH
Confidence            4654 8999999999999998  599999998732       1110000                         0 1122


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC--CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YL  447 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s--t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~--~l  447 (766)
                      ..|-|.+.|             ...-.|.+.|..+.  ...||+|||++|+.+..++.. ..-+.....--.+++.  .+
T Consensus       189 ~aERdiL~~-------------~ds~~vVKLyYsFQD~~~LYLiMEylPGGD~mTLL~~-~~~L~e~~arfYiaE~vlAI  254 (550)
T KOG0605|consen  189 RAERDILAE-------------VDSPWVVKLYYSFQDKEYLYLIMEYLPGGDMMTLLMR-KDTLTEDWARFYIAETVLAI  254 (550)
T ss_pred             HHHHHHhhh-------------cCCCcEEEEEEEecCCCeeEEEEEecCCccHHHHHHh-cCcCchHHHHHHHHHHHHHH
Confidence            233333332             12233455565444  346999999999998876421 1112222222333443  36


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHH---------------------------------
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL---------------------------------  494 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l---------------------------------  494 (766)
                      ..||.+|++|+||||.|+||+.  .|+++|.|||++.-+....+...                                 
T Consensus       255 ~~iH~~gyIHRDIKPdNlLiD~--~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (550)
T KOG0605|consen  255 ESIHQLGYIHRDIKPDNLLIDA--KGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRRE  332 (550)
T ss_pred             HHHHHcCcccccCChhheeecC--CCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHH
Confidence            7899999999999999999996  89999999999865543222111                                 


Q ss_pred             -HH--------HHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Q 004234          495 -LE--------AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSF  539 (766)
Q Consensus       495 -~~--------l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~~~  539 (766)
                       .+        +.+. .-++|+||+++++.---....+|-+++...+.++|-.|
T Consensus       333 ~~~~w~~nrr~~a~S-tVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGy  385 (550)
T KOG0605|consen  333 QLQTWKRNRRQLAYS-TVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGY  385 (550)
T ss_pred             HHHHHHhhhhhhhhc-ccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCC
Confidence             00        1111 24789999999886544567889999999998888766

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.67  E-value=1.5e-15  Score=159.05  Aligned_cols=189  Identities=19%  Similarity=0.225  Sum_probs=131.7

Q ss_pred             hccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004234          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (766)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (766)
                      ++|+. ..+|.||||.||..+.  +|..+|+|++.-                                  ..+++     
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k----------------------------------~~vVk-----   84 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDK----------------------------------QKVVK-----   84 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCH----------------------------------HHHHH-----
Confidence            45554 6899999999999999  599999998721                                  11111     


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHHHHH
Q 004234          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVESYL  447 (766)
Q Consensus       371 l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~lv~~~l  447 (766)
                      +.+.-...+|-+-+....     +|.  +-+.++  ...+..+|||||++|+.|..+..- ........+.-..-+-..+
T Consensus        85 lKQveH~~nEk~vL~~v~-----~PF--lv~l~~t~~d~~~lymvmeyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAl  157 (355)
T KOG0616|consen   85 LKQVEHTHNEKRVLKAVS-----HPF--LVKLYGTFKDNSNLYMVMEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLAL  157 (355)
T ss_pred             HHHHHHHhhHHHHHhhcc-----Cce--eEEEEEeeccCCeEEEEEeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHH
Confidence            111111223333222221     111  112221  223567999999999999987532 1222223344444455668


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~  527 (766)
                      +.+|..++++||+||+|||++.  +|.|++.|||.+.+++..+-         .+.+++++++++.+...-.....|-++
T Consensus       158 eylH~~~iiYRDLKPENiLlD~--~G~iKitDFGFAK~v~~rT~---------TlCGTPeYLAPEii~sk~ynkavDWWa  226 (355)
T KOG0616|consen  158 EYLHSLDIIYRDLKPENLLLDQ--NGHIKITDFGFAKRVSGRTW---------TLCGTPEYLAPEIIQSKGYNKAVDWWA  226 (355)
T ss_pred             HHHHhcCeeeccCChHHeeecc--CCcEEEEeccceEEecCcEE---------EecCCccccChHHhhcCCCCcchhHHH
Confidence            9999999999999999999996  89999999999999987632         246899999999999877788899999


Q ss_pred             HHHHHHHHHHHH
Q 004234          528 VRRTAQFFLNSF  539 (766)
Q Consensus       528 l~~~i~~~l~~~  539 (766)
                      |...+++|+..|
T Consensus       227 lGVLIYEMlaG~  238 (355)
T KOG0616|consen  227 LGVLIYEMLAGY  238 (355)
T ss_pred             HHHHHHHHHcCC
Confidence            999998888765

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.65  E-value=1.2e-15  Score=168.79  Aligned_cols=185  Identities=18%  Similarity=0.179  Sum_probs=136.1

Q ss_pred             cccccceeEEEEEeecCee-EEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARLKGEE-VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       300 PIgsaSiGQVhrA~l~G~~-VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      -+|+|++|+||+|.++|+. ||||+..+.-...                             ..           +-+|.
T Consensus        48 ~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~-----------------------------~~-----------~~~f~   87 (362)
T KOG0192|consen   48 VLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDD-----------------------------ES-----------RKAFR   87 (362)
T ss_pred             hcccCCceeEEEEEeCCceeEEEEEecchhcCh-----------------------------HH-----------HHHHH
Confidence            3999999999999999998 9999874432111                             00           34678


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHHHH--HHHHHhCC-
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVESY--LEQILSHG-  454 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~lv~~~--l~qI~~~G-  454 (766)
                      +|+..+.++    ++..-|.+.-+..+-.....|||||++|++|.++... ....++.......+.+..  +..+|..+ 
T Consensus        88 ~E~~il~~l----~HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~  163 (362)
T KOG0192|consen   88 REASLLSRL----RHPNIVQFYGACTSPPGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGP  163 (362)
T ss_pred             HHHHHHHhC----CCCCeeeEEEEEcCCCCceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            888877774    2333344444443222246899999999999998754 355677777766665544  77899999 


Q ss_pred             ccccCCCCCcEEEeecCCC-cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH--cCCCCCCCCHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGG-RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ--MGVLVPTGDTTAVRRT  531 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g-~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~--lG~~~~~~D~~~l~~~  531 (766)
                      ++|+|+||.|||++.  ++ .++++|||+++......      ....-..+++.+|+|++++  -...+..+|+++|.-.
T Consensus       164 iIHrDLK~~NiLv~~--~~~~~KI~DFGlsr~~~~~~------~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIv  235 (362)
T KOG0192|consen  164 IIHRDLKSDNILVDL--KGKTLKIADFGLSREKVISK------TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIV  235 (362)
T ss_pred             eeecccChhhEEEcC--CCCEEEECCCccceeecccc------ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHH
Confidence            999999999999986  66 99999999998776532      0111156889999999999  5577888999999876


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +-+++
T Consensus       236 lWEl~  240 (362)
T KOG0192|consen  236 LWELL  240 (362)
T ss_pred             HHHHH
Confidence            65544

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.64  E-value=1e-15  Score=170.66  Aligned_cols=189  Identities=21%  Similarity=0.322  Sum_probs=128.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +-+|.|||.+|++|+.  .++.+||||.-.          +-                        |+.|      +-++
T Consensus        79 ~~lGeGSYStV~~A~~~~t~keYAiKVl~K----------~~------------------------Iike------~Kvk  118 (604)
T KOG0592|consen   79 KILGEGSYSTVVLAREKATGKEYAIKVLDK----------RY------------------------IIKE------KKVK  118 (604)
T ss_pred             heeccccceeEEEeeecCCCceeeHhhhhH----------HH------------------------HHhh------cccc
Confidence            4699999999999999  599999998711          00                        0000      0112


Q ss_pred             HH-HHHHHHHHHHHhcCCCCccccceeeecc--CCCeEEEEeecCCCChhhhhhhhhcC-CCHH--HHHHHHHHHHHHHH
Q 004234          377 YT-QEAANAELFASNFKDMDYVKVPTIFWEY--TTPQILTMEYVPGIKINRIQSLDELG-VDRK--RLGRYAVESYLEQI  450 (766)
Q Consensus       377 f~-~EA~Nl~~f~~~f~~~~~V~vP~v~~e~--st~~vLVMEyieG~~L~d~~~l~~~g-~d~~--~la~~lv~~~l~qI  450 (766)
                      |. .|-..|.++.    ++|.|  -+.|..+  ....|.|+||++++.|-+++.  +.| +|..  +.-...+-..++.|
T Consensus       119 YV~~Ek~~l~~L~----~hPgi--vkLy~TFQD~~sLYFvLe~A~nGdll~~i~--K~Gsfde~caR~YAAeIldAleyl  190 (604)
T KOG0592|consen  119 YVTREKEALTQLS----GHPGI--VKLYFTFQDEESLYFVLEYAPNGDLLDLIK--KYGSFDETCARFYAAEILDALEYL  190 (604)
T ss_pred             hhhHHHHHHHHhh----CCCCe--EEEEEEeecccceEEEEEecCCCcHHHHHH--HhCcchHHHHHHHHHHHHHHHHHH
Confidence            22 1222233332    33433  2333322  356799999999999988643  222 3322  11122233447899


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHH-------HHHHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG-------LLEAFYGIYEKDADKVLQAMVQMGVLVPTG  523 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~-------l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~  523 (766)
                      |..|++|||+||+|||++.  ||+++|.|||.+..+++.....       .+.-=.+-+-++.+|+.++++.-+...+..
T Consensus       191 H~~GIIHRDlKPENILLd~--dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~s  268 (604)
T KOG0592|consen  191 HSNGIIHRDLKPENILLDK--DGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSS  268 (604)
T ss_pred             HhcCceeccCChhheeEcC--CCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCccc
Confidence            9999999999999999996  9999999999999998865541       111101223468899999999999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 004234          524 DTTAVRRTAQFFLN  537 (766)
Q Consensus       524 D~~~l~~~i~~~l~  537 (766)
                      |+++|...++.|+.
T Consensus       269 DiWAlGCilyQmla  282 (604)
T KOG0592|consen  269 DLWALGCILYQMLA  282 (604)
T ss_pred             chHHHHHHHHHHhc
Confidence            99999998887764

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=2.5e-16  Score=170.67  Aligned_cols=194  Identities=17%  Similarity=0.214  Sum_probs=128.3

Q ss_pred             cccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      .+.+|+|.||.|-.|.-  +|+.||||+....--.                        +.           +.....+.
T Consensus       177 ~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~------------------------~~-----------s~~~~~~~  221 (475)
T KOG0615|consen  177 SKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKST------------------------GC-----------SRAIAKTR  221 (475)
T ss_pred             eeeecCCceeEEEEEEEcccCcEEEeeeeehhhcc------------------------cc-----------cccccchh
Confidence            36899999999999998  6999999997321000                        00           00112234


Q ss_pred             HHHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhh-hhhhcCCCHHHHHHHHHHHHHHHHHhC
Q 004234          376 DYTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQ-SLDELGVDRKRLGRYAVESYLEQILSH  453 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~st~~vLVMEyieG~~L~d~~-~l~~~g~d~~~la~~lv~~~l~qI~~~  453 (766)
                      |..+|..-+.++     ++|+ |.+-..| +-....||||||++|+.|-+.. +....+.+..+..-.-+-..++++|+.
T Consensus       222 ~v~~EieILkkL-----~HP~IV~~~d~f-~~~ds~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~  295 (475)
T KOG0615|consen  222 DVQNEIEILKKL-----SHPNIVRIKDFF-EVPDSSYMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQ  295 (475)
T ss_pred             hhHHHHHHHHhc-----CCCCEEEEeeee-ecCCceEEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHc
Confidence            556777766665     2343 3333333 3345569999999999998843 222222332222222233446789999


Q ss_pred             CccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC---CCCHHHHH
Q 004234          454 GFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP---TGDTTAVR  529 (766)
Q Consensus       454 GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~---~~D~~~l~  529 (766)
                      |+.|||+||+|||+... .+-.+++.|||+++.....   .+.+.    ..+++.|++|+.+..+-..-   ..|++++.
T Consensus       296 GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~---sfm~T----lCGTpsYvAPEVl~~kg~~~~~~kVDiWSlG  368 (475)
T KOG0615|consen  296 GIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEG---SFMKT----LCGTPSYVAPEVLASKGVEYYPSKVDIWSLG  368 (475)
T ss_pred             CcccccCCcceEEeccCCcceEEEecccchhhccccc---eehhh----hcCCccccChhheecCCeecccchheeeecc
Confidence            99999999999999852 2357999999999988642   23333    45699999999987654443   34888888


Q ss_pred             HHHHHHHHHH
Q 004234          530 RTAQFFLNSF  539 (766)
Q Consensus       530 ~~i~~~l~~~  539 (766)
                      ..+...+..|
T Consensus       369 cvLfvcLsG~  378 (475)
T KOG0615|consen  369 CVLFVCLSGY  378 (475)
T ss_pred             ceEEEEeccC
Confidence            7776666554

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.62  E-value=1e-14  Score=144.86  Aligned_cols=164  Identities=23%  Similarity=0.271  Sum_probs=105.5

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      ++||+|++|+||+|+. +|++||||+.+|+.......+..++   .......      ...++..+.         ....
T Consensus         3 ~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~---------~~~~   64 (187)
T cd05119           3 GPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRT---GDYRFGR------KKSNWRYLS---------RLWA   64 (187)
T ss_pred             cccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhH---HHHHhcc------CCcchhhhh---------hHHH
Confidence            5799999999999999 5999999999987654322222111   1111110      111222211         1122


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCC-----hhhhhhhhhcCCCHHHHHHHHHHHHHHHHHh
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIK-----INRIQSLDELGVDRKRLGRYAVESYLEQILS  452 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~-----L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~  452 (766)
                      ..|.+++.++..     ..+.+|+++.  +...+|+|||++|..     +.+...   . .....++..+ ...+..+|.
T Consensus        65 ~~e~~~l~~l~~-----~~~~~~~~~~--~~~~~lv~e~~~g~~~~~~~l~~~~~---~-~~~~~~~~~~-~~~l~~lh~  132 (187)
T cd05119          65 EKEFRNLKRLYE-----AGVPVPKPID--LNRHVLVMEFIGGDGIPAPRLKDVRL---L-EDPEELYDQI-LELMRKLYR  132 (187)
T ss_pred             HHHHHHHHHHHH-----cCCCCCceEe--cCCCEEEEEEeCCCCccChhhhhhhh---c-ccHHHHHHHH-HHHHHHHhh
Confidence            345566666644     2356787774  456799999999943     333211   0 1233333333 334667787


Q ss_pred             -CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHH
Q 004234          453 -HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL  495 (766)
Q Consensus       453 -~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~  495 (766)
                       .|++|+|+||+||+++   ++.++++|||++...+.+....+.
T Consensus       133 ~~~ivH~Dl~p~Nili~---~~~~~liDfg~a~~~~~~~~~~~~  173 (187)
T cd05119         133 EAGLVHGDLSEYNILVD---DGKVYIIDVPQAVEIDHPNAEEFL  173 (187)
T ss_pred             ccCcCcCCCChhhEEEE---CCcEEEEECcccccccCcchHHHH
Confidence             9999999999999997   688999999999998887666554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.61  E-value=8.5e-16  Score=169.07  Aligned_cols=184  Identities=17%  Similarity=0.234  Sum_probs=128.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +-+|.|+||.||+|+-  +|+.||||-++-.                             .+.|.            |+-
T Consensus        16 ~klGDGTfGsV~la~~~~~~~~VAIK~MK~K-----------------------------f~s~e------------e~~   54 (538)
T KOG0661|consen   16 RKLGDGTFGSVYLAKSKETGELVAIKKMKKK-----------------------------FYSWE------------ECM   54 (538)
T ss_pred             HHhcCCcceeEEEeeecCCCceeeHHHHHhh-----------------------------hccHH------------HHH
Confidence            4589999999999998  6999999954211                             11222            233


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHH--HHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESY--LEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~--l~qI~~~G  454 (766)
                      =.+|.+.+.++.   .+..-|.+-.|+.+-....++|||||+- .|.++...+..-+....+-..+.+.+  +.+||.+|
T Consensus        55 nLREvksL~kln---~hpniikL~Evi~d~~~~L~fVfE~Md~-NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~G  130 (538)
T KOG0661|consen   55 NLREVKSLRKLN---PHPNIIKLKEVIRDNDRILYFVFEFMDC-NLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHG  130 (538)
T ss_pred             HHHHHHHHHhcC---CCCcchhhHHHhhccCceEeeeHHhhhh-hHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            344555444432   2333456666776655578999999984 56666554544455666655555544  88899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      |||||+||+||||..  ...|+|.|||+++.+....  .|.+.+-.    -...+-+.+++-|..+...|++++...+.+
T Consensus       131 fFHRDlKPENiLi~~--~~~iKiaDFGLARev~Skp--PYTeYVST----RWYRAPEvLLrs~~Ys~pvD~wA~GcI~aE  202 (538)
T KOG0661|consen  131 FFHRDLKPENILISG--NDVIKIADFGLAREVRSKP--PYTEYVST----RWYRAPEVLLRSGYYSSPVDMWAVGCIMAE  202 (538)
T ss_pred             cccccCChhheEecc--cceeEecccccccccccCC--Ccchhhhc----ccccchHHhhhccccCCchHHHHHHHHHHH
Confidence            999999999999985  5689999999999985432  23333222    234556788899999999999999987665


Q ss_pred             H
Q 004234          535 F  535 (766)
Q Consensus       535 ~  535 (766)
                      +
T Consensus       203 l  203 (538)
T KOG0661|consen  203 L  203 (538)
T ss_pred             H
Confidence            4

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.60  E-value=2.2e-14  Score=145.21  Aligned_cols=144  Identities=19%  Similarity=0.314  Sum_probs=106.2

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      ++||+|++|.||+|+..|..|+||+..|.....-..|                             ..     .....+.
T Consensus         2 ~~l~~G~~~~vy~~~~~~~~~~vK~~~~~~~~~~~~~-----------------------------~~-----~~~~~~~   47 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFLGIKAVIKWRIPKRYRHPELD-----------------------------ER-----IRRERTR   47 (211)
T ss_pred             cccccCceEEEEEEeeCCCceEEEEeCCcCCcChHHH-----------------------------HH-----HHHHHHH
Confidence            4789999999999999999999998866543221111                             00     1123566


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHA  458 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~GffHa  458 (766)
                      +|++++..+..     +++.+|.++....+..+++|||++|.+|.++.....  .....++..+. ..+.++|..|++|+
T Consensus        48 ~E~~~l~~l~~-----~~i~~p~~~~~~~~~~~lv~e~~~G~~L~~~~~~~~--~~~~~i~~~i~-~~l~~lH~~~i~H~  119 (211)
T PRK14879         48 REARIMSRARK-----AGVNVPAVYFVDPENFIIVMEYIEGEPLKDLINSNG--MEELELSREIG-RLVGKLHSAGIIHG  119 (211)
T ss_pred             HHHHHHHHHHH-----CCCCCCeEEEEeCCCCEEEEEEeCCcCHHHHHHhcc--HHHHHHHHHHH-HHHHHHHhCCcccC
Confidence            77777777643     458889988766788899999999999998753211  12334444433 46788999999999


Q ss_pred             CCCCCcEEEeecCCCcEEEEeecceeccC
Q 004234          459 DPHPGNIAVDDVNGGRLIFYDFGMMGSIS  487 (766)
Q Consensus       459 DpHPGNILV~~~~~g~l~LiDFGlv~~L~  487 (766)
                      |+||+||+++   ++.++++|||+++..+
T Consensus       120 Dl~p~Nil~~---~~~~~liDf~~a~~~~  145 (211)
T PRK14879        120 DLTTSNMILS---GGKIYLIDFGLAEFSK  145 (211)
T ss_pred             CCCcccEEEE---CCCEEEEECCcccCCC
Confidence            9999999997   6789999999988754

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.59  E-value=2.1e-14  Score=150.86  Aligned_cols=183  Identities=17%  Similarity=0.213  Sum_probs=125.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..+|.||+|.||+++.  +|+-||||.-.-.-.                             |     ..+.+...+|+.
T Consensus         8 gkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esed-----------------------------d-----~~VkKIAlREIr   53 (396)
T KOG0593|consen    8 GKVGEGSYGVVMKCRNKDTGQIVAIKKFVESED-----------------------------D-----PVVKKIALREIR   53 (396)
T ss_pred             hccccCcceEEEEeccCCcccEEEEEeeccCCc-----------------------------c-----HHHHHHHHHHHH
Confidence            3589999999999999  599999996521100                             1     123444566776


Q ss_pred             HHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHH--HHHHHh
Q 004234          377 YTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESY--LEQILS  452 (766)
Q Consensus       377 f~~EA~--Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~--l~qI~~  452 (766)
                      +....+  |+..+-+.|+.             ..+..||.||||-.-|.++.. -..|.+...+-..+.+..  ++.+|.
T Consensus        54 mLKqLkH~NLVnLiEVFrr-------------krklhLVFE~~dhTvL~eLe~-~p~G~~~~~vk~~l~Q~l~ai~~cHk  119 (396)
T KOG0593|consen   54 MLKQLKHENLVNLIEVFRR-------------KRKLHLVFEYCDHTVLHELER-YPNGVPSELVKKYLYQLLKAIHFCHK  119 (396)
T ss_pred             HHHhcccchHHHHHHHHHh-------------cceeEEEeeecchHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhhhhhh
Confidence            666554  56555555543             345689999999988888764 345677666655554433  566789


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      ++++|||+||+|||++.  .|.++|+|||.++.++. .-+.|.+.+..-..+.++.++-    =--..+..|++++.-.+
T Consensus       120 ~n~IHRDIKPENILit~--~gvvKLCDFGFAR~L~~-pgd~YTDYVATRWYRaPELLvG----DtqYG~pVDiWAiGCv~  192 (396)
T KOG0593|consen  120 NNCIHRDIKPENILITQ--NGVVKLCDFGFARTLSA-PGDNYTDYVATRWYRAPELLVG----DTQYGKPVDIWAIGCVF  192 (396)
T ss_pred             cCeecccCChhheEEec--CCcEEeccchhhHhhcC-CcchhhhhhhhhhccChhhhcc----cCcCCCcccchhhhHHH
Confidence            99999999999999997  89999999999999984 2345666544333343333321    11234567999988765


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       193 aEl~  196 (396)
T KOG0593|consen  193 AELL  196 (396)
T ss_pred             HHHh
Confidence            5544

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.59  E-value=8.2e-15  Score=161.18  Aligned_cols=190  Identities=18%  Similarity=0.176  Sum_probs=123.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+.+.....                                 -.+...      .
T Consensus         7 ~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~---------------------------------~~~~~~------~   47 (363)
T cd05628           7 KVIGRGAFGEVRLVQKKDTGHVYAMKILRKADML---------------------------------EKEQVG------H   47 (363)
T ss_pred             EEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHH---------------------------------HhhHHH------H
Confidence            6799999999999998  5899999987321000                                 000111      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec--cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e--~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      +..|...+.++     +++  .+++.+..  .....+|||||++|+.|.++... ...++...+...+.+  ..+..+|.
T Consensus        48 ~~~E~~il~~~-----~~~--~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~~lH~  119 (363)
T cd05628          48 IRAERDILVEA-----DSL--WVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMK-KDTLTEEETQFYIAETVLAIDSIHQ  119 (363)
T ss_pred             HHHHHHHHHhC-----CCC--CcceEEEEEecCCeEEEEEcCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            22333333322     122  23333332  23457999999999999886532 223444443333322  34788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHH-----------------------------HHHHhh
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA-----------------------------FYGIYE  503 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l-----------------------------~~a~~~  503 (766)
                      .|++|+|+||.||+++.  ++.++|+|||++..+....+..+...                             ......
T Consensus       120 ~givHrDlKp~NILi~~--~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (363)
T cd05628         120 LGFIHRDIKPDNLLLDS--KGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTV  197 (363)
T ss_pred             CCeEecCCCHHHeEECC--CCCEEEeeccCcccccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence            99999999999999986  88999999999987654322111000                             001124


Q ss_pred             cCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          504 KDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       504 ~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      +++.++++++...+......|++++...+.+++.
T Consensus       198 Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~  231 (363)
T cd05628         198 GTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLI  231 (363)
T ss_pred             CCccccCHHHHcCCCCCCchhhhhhHHHHHHHHh
Confidence            6788999999877767788999999988776653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.58  E-value=9.3e-15  Score=161.89  Aligned_cols=186  Identities=16%  Similarity=0.131  Sum_probs=132.0

Q ss_pred             hccCc-ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          294 ERFDV-EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      ..|+. .-||.|+||.||+|.+ +|+.||||...++....                                        
T Consensus        75 ~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~----------------------------------------  114 (361)
T KOG1187|consen   75 NNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG----------------------------------------  114 (361)
T ss_pred             hCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc----------------------------------------
Confidence            46765 7899999999999999 67999999664332110                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCC-CeEEEEeecCCCChhhhhhhhhc-CCCH---HHHHHHHHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTT-PQILTMEYVPGIKINRIQSLDEL-GVDR---KRLGRYAVESY  446 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st-~~vLVMEyieG~~L~d~~~l~~~-g~d~---~~la~~lv~~~  446 (766)
                        +-+|.+|...+.+++     ++++.--.-|....+ +++||+||++.++|.+....... .++.   -+||..+++. 
T Consensus       115 --~~eF~~Ei~~ls~l~-----H~Nlv~LlGyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~g-  186 (361)
T KOG1187|consen  115 --EREFLNEVEILSRLR-----HPNLVKLLGYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARG-  186 (361)
T ss_pred             --hhHHHHHHHHHhcCC-----CcCcccEEEEEecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHH-
Confidence              224777777777664     233322233333334 48999999999999997654333 3333   3444444443 


Q ss_pred             HHHHHhC---CccccCCCCCcEEEeecCCCcEEEEeecceeccCh-hhHHHHHHHHHHHh-hcCHHHHHHHHHHcCCCCC
Q 004234          447 LEQILSH---GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP-NIREGLLEAFYGIY-EKDADKVLQAMVQMGVLVP  521 (766)
Q Consensus       447 l~qI~~~---GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~-~~r~~l~~l~~a~~-~~D~~~v~~~l~~lG~~~~  521 (766)
                      +..+|..   -++|+|+||.|||++.  +...++.|||++...+. ....       ... .++..++++++...|.++.
T Consensus       187 L~yLH~~~~~~iiHrDiKssNILLD~--~~~aKlsDFGLa~~~~~~~~~~-------~~~~~gt~gY~~PEy~~~g~lt~  257 (361)
T KOG1187|consen  187 LAYLHEGCPPPIIHRDIKSSNILLDE--DFNAKLSDFGLAKLGPEGDTSV-------STTVMGTFGYLAPEYASTGKLTE  257 (361)
T ss_pred             HHHHccCCCCCEecCCCCHHHeeECC--CCCEEccCccCcccCCccccce-------eeecCCCCccCChhhhccCCcCc
Confidence            7777764   3999999999999986  89999999999965544 2111       111 6788899999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 004234          522 TGDTTAVRRTAQFFL  536 (766)
Q Consensus       522 ~~D~~~l~~~i~~~l  536 (766)
                      ..|+++|...+.+++
T Consensus       258 KsDVySFGVvllEli  272 (361)
T KOG1187|consen  258 KSDVYSFGVVLLELI  272 (361)
T ss_pred             ccccccchHHHHHHH
Confidence            999999998766554

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.58  E-value=2e-14  Score=147.90  Aligned_cols=185  Identities=19%  Similarity=0.208  Sum_probs=124.7

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      ++||+|++|.||+|.+ +++.||+|+.++.....                                         .+.++
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~-----------------------------------------~~~~~   39 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQE-----------------------------------------LKIKF   39 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHH-----------------------------------------HHHHH
Confidence            3689999999999998 68899999875433211                                         12245


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      .+|+..+..+     +++++.-+.-+....+..+++|||++|++|.+.........+...+...+.+  ..+..+|..|+
T Consensus        40 ~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~  114 (250)
T cd05085          40 LSEARILKQY-----DHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNC  114 (250)
T ss_pred             HHHHHHHHhC-----CCCCcCeEEEEEecCCccEEEEECCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            5666655554     2344333332333446789999999999998865433333455554444333  34677899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|++|+||+++.  ++.++++|||++..........     .........++++++...+..+...|++++...+.++
T Consensus       115 ~H~dl~p~nili~~--~~~~~l~d~g~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~  187 (250)
T cd05085         115 IHRDLAARNCLVGE--NNVLKISDFGMSRQEDDGIYSS-----SGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWET  187 (250)
T ss_pred             eecccChheEEEcC--CCeEEECCCccceecccccccc-----CCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHH
Confidence            99999999999985  8899999999987654321110     0011123457788888877777888999998776655


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       188 ~  188 (250)
T cd05085         188 F  188 (250)
T ss_pred             h
Confidence            4

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=7.1e-15  Score=166.14  Aligned_cols=182  Identities=16%  Similarity=0.164  Sum_probs=128.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      .-||.|+||+||+|+.  +|+.||+||....          .|.       +                ...++.+.+|+.
T Consensus        24 ~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~----------~l~-------k----------------~~~reKv~~EIe   70 (592)
T KOG0575|consen   24 RFLGKGGFARCYEARDLDTGEVVAVKVVPKK----------LLK-------K----------------PKQREKVLNEIE   70 (592)
T ss_pred             eeeccCcceEEEEEEEcCCCcEEEEEEeehH----------Hhc-------C----------------cchHHHHHHHHH
Confidence            6799999999999998  5999999997210          000       0                112233444543


Q ss_pred             HHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~--Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      ..+..+  |+..|.+.|             |-++..|||.|+|+-.+|..+.. ....++..+....+.+  ..+..+|.
T Consensus        71 IHr~L~HpnIV~f~~~F-------------EDs~nVYivLELC~~~sL~el~K-rrk~ltEpEary~l~QIv~GlkYLH~  136 (592)
T KOG0575|consen   71 IHRSLKHPNIVQFYHFF-------------EDSNNVYIVLELCHRGSLMELLK-RRKPLTEPEARYFLRQIVEGLKYLHS  136 (592)
T ss_pred             HHHhcCCCcEEeeeeEe-------------ecCCceEEEEEecCCccHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            333221  333333333             33566789999999999999865 3333444443333322  34778899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChh-hHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN-IREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~-~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      +|++|||+|-||||+++  +.+++|.|||++..+..+ .|.       ....+++.|++|+++.-.-.+..+|++++...
T Consensus       137 ~~IiHRDLKLGNlfL~~--~~~VKIgDFGLAt~le~~~Erk-------~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcv  207 (592)
T KOG0575|consen  137 LGIIHRDLKLGNLFLNE--NMNVKIGDFGLATQLEYDGERK-------KTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCV  207 (592)
T ss_pred             cCceecccchhheeecC--cCcEEecccceeeeecCccccc-------ceecCCCcccChhHhccCCCCCchhhhhhhhH
Confidence            99999999999999986  779999999999999844 443       22468999999999987667778999999988


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      ++-+|
T Consensus       208 mYtLL  212 (592)
T KOG0575|consen  208 MYTLL  212 (592)
T ss_pred             HHhhh
Confidence            87765

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.58  E-value=9e-15  Score=157.36  Aligned_cols=191  Identities=18%  Similarity=0.208  Sum_probs=127.9

Q ss_pred             hccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004234          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (766)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (766)
                      +.|+. +.||.||||+|+..+.  +|+-+|+||++..                ..+++                .| .+.
T Consensus        25 ~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~----------------~iv~~----------------~e-~~~   71 (357)
T KOG0598|consen   25 DDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKK----------------KIVEK----------------KE-VRH   71 (357)
T ss_pred             hheeeeeeeeccCCceEEEEEEcccCceeehhhhhhh----------------Hhhhh----------------hh-HHH
Confidence            45665 7899999999999998  5999999987321                00000                00 112


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeee-ccCCCeEEEEeecCCCChhhhhh-hhhcCCCHHHHHHHHHHHHHH
Q 004234          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQS-LDELGVDRKRLGRYAVESYLE  448 (766)
Q Consensus       371 l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~-e~st~~vLVMEyieG~~L~d~~~-l~~~g~d~~~la~~lv~~~l~  448 (766)
                      +..|      ..-+.+.     ++| +.|.-.|. +-..+.+||+||+.|+.|--... ......++.++-..-+-..+.
T Consensus        72 ~~~E------r~IL~~v-----~hP-Fiv~l~ysFQt~~kLylVld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~  139 (357)
T KOG0598|consen   72 TKAE------RNILSKI-----KHP-FIVKLIYSFQTEEKLYLVLDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALG  139 (357)
T ss_pred             HHHH------HHHHHhC-----CCC-cEeeeEEecccCCeEEEEEeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHH
Confidence            2222      2222221     222 22333332 22356799999999998876432 112223333333333445688


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceec-cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS-ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~-L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~  527 (766)
                      .+|+.|++|||+||+|||++.  +|+++|.|||+++. +.......-       ..++++||+++++.-.-....+|-++
T Consensus       140 ~LH~~gIiyRDlKPENILLd~--~GHi~LtDFgL~k~~~~~~~~t~t-------fcGT~eYmAPEil~~~gy~~~vDWWs  210 (357)
T KOG0598|consen  140 YLHSKGIIYRDLKPENILLDE--QGHIKLTDFGLCKEDLKDGDATRT-------FCGTPEYMAPEILLGKGYDKAVDWWS  210 (357)
T ss_pred             HHHhCCeeeccCCHHHeeecC--CCcEEEeccccchhcccCCCcccc-------ccCCccccChHHHhcCCCCcccchHh
Confidence            999999999999999999996  99999999999984 333222211       45799999999998887888899999


Q ss_pred             HHHHHHHHHHH
Q 004234          528 VRRTAQFFLNS  538 (766)
Q Consensus       528 l~~~i~~~l~~  538 (766)
                      +...+++++..
T Consensus       211 LGillYeML~G  221 (357)
T KOG0598|consen  211 LGILLYEMLTG  221 (357)
T ss_pred             HHHHHHHHhhC
Confidence            99888877643

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.58  E-value=1.4e-14  Score=157.03  Aligned_cols=183  Identities=20%  Similarity=0.187  Sum_probs=122.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.+......                                       ....-.
T Consensus         7 ~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------------~~~~~~   47 (333)
T cd05600           7 TQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFK---------------------------------------LNEVRH   47 (333)
T ss_pred             EEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhh---------------------------------------hhHHHH
Confidence            5799999999999999  58999999874321000                                       000112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +.+|...+..+    . ++++.-..-+.......+|||||++|++|.++.... ..+....+...+  +-..+..+|..|
T Consensus        48 ~~~e~~~l~~~----~-h~~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lH~~~  121 (333)
T cd05600          48 VLTERDILTTT----K-SEWLVKLLYAFQDDEYLYLAMEYVPGGDFRTLLNNL-GVLSEDHARFYMAEMFEAVDALHELG  121 (333)
T ss_pred             HHHHHHHHHhC----C-CCCCccEEEEEEcCCEEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33444433333    1 233222222223345679999999999999875321 223333332222  223477899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  ++.++|+|||++.......         ....+.+.++++++......+...|++++...+.+
T Consensus       122 ivH~dlkp~Nil~~~--~~~~kL~Dfg~a~~~~~~~---------~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~e  190 (333)
T cd05600         122 YIHRDLKPENFLIDA--SGHIKLTDFGLSKGIVTYA---------NSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYE  190 (333)
T ss_pred             ccccCCCHHHEEECC--CCCEEEEeCcCCccccccc---------CCcccCccccChhHhcCCCCCCccceecchHHHhh
Confidence            999999999999985  8899999999998765411         11235677889998877777788999999987776


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       191 ll~  193 (333)
T cd05600         191 FLC  193 (333)
T ss_pred             hhh
Confidence            653

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.58  E-value=1.5e-14  Score=154.17  Aligned_cols=186  Identities=20%  Similarity=0.183  Sum_probs=121.4

Q ss_pred             ccccccceeEEEEEee------------------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccch
Q 004234          299 EPIAAASLGQVHRARL------------------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW  360 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l------------------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~  360 (766)
                      +.||+|++|.||+|++                  ++..||||+.++.....                             
T Consensus        11 ~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------   61 (304)
T cd05096          11 EKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKN-----------------------------   61 (304)
T ss_pred             eEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHH-----------------------------
Confidence            5799999999999975                  13479999986653211                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc---------
Q 004234          361 VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---------  431 (766)
Q Consensus       361 ~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~---------  431 (766)
                                  ...+|.+|.+.+.++.     ++++.-..-+....+..+|+|||++|++|.++......         
T Consensus        62 ------------~~~~~~~E~~~l~~l~-----h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  124 (304)
T cd05096          62 ------------ARNDFLKEVKILSRLK-----DPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGND  124 (304)
T ss_pred             ------------HHHHHHHHHHHHhhcC-----CCCeeEEEEEEecCCceEEEEecCCCCcHHHHHHhcccccccccccc
Confidence                        0124555665555442     23332222222334667999999999999886532110         


Q ss_pred             ---------CCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHH
Q 004234          432 ---------GVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYG  500 (766)
Q Consensus       432 ---------g~d~~~la~~l--v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a  500 (766)
                               .+....+...+  +...+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .+
T Consensus       125 ~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH~dlkp~Nill~~--~~~~kl~DfG~~~~~~~~~~~~~----~~  198 (304)
T cd05096         125 AVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGE--NLTIKIADFGMSRNLYAGDYYRI----QG  198 (304)
T ss_pred             ccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccCcchhheEEcC--CccEEECCCccceecccCceeEe----cC
Confidence                     11222222222  223477899999999999999999986  88999999999987644321110    11


Q ss_pred             HhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          501 IYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       501 ~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      .......++++++...+..++..|++++.-.+.+++
T Consensus       199 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  234 (304)
T cd05096         199 RAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEIL  234 (304)
T ss_pred             cCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHH
Confidence            112245678888887777888899999998777665

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.57  E-value=1.4e-15  Score=167.96  Aligned_cols=194  Identities=17%  Similarity=0.193  Sum_probs=138.5

Q ss_pred             ChhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004234          288 PLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (766)
Q Consensus       288 ~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (766)
                      ++..+|.-|.++.+|||.||.||-|..  +|+.|||||+..-                    ++ |.             
T Consensus       559 d~stvYQif~devLGSGQFG~VYgg~hRktGrdVAvKvIdKl--------------------rF-p~-------------  604 (888)
T KOG4236|consen  559 DISTVYQIFADEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKL--------------------RF-PT-------------  604 (888)
T ss_pred             hHHHHHHhhhHhhccCCcceeeecceecccCceeeeeeeecc--------------------cC-CC-------------
Confidence            466788888889999999999999998  5999999997110                    11 11             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH---
Q 004234          366 ECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA---  442 (766)
Q Consensus       366 E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l---  442 (766)
                            .+|-.+++|.+.++.+     ++|.|..-....|-..+.+.|||-+.|--|.-+...+...+ +.++..-+   
T Consensus       605 ------kqesqlR~EVaILq~l-----~HPGiV~le~M~ET~ervFVVMEKl~GDMLEMILSsEkgRL-~er~TkFlvtQ  672 (888)
T KOG4236|consen  605 ------KQESQLRNEVAILQNL-----HHPGIVNLECMFETPERVFVVMEKLHGDMLEMILSSEKGRL-PERITKFLVTQ  672 (888)
T ss_pred             ------chHHHHHHHHHHHHhc-----CCCCeeEEEEeecCCceEEEEehhhcchHHHHHHHhhcccc-hHHHHHHHHHH
Confidence                  2344566676666554     45666666666666677789999999977765544333222 22322222   


Q ss_pred             HHHHHHHHHhCCccccCCCCCcEEEeecC-CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004234          443 VESYLEQILSHGFFHADPHPGNIAVDDVN-GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP  521 (766)
Q Consensus       443 v~~~l~qI~~~GffHaDpHPGNILV~~~~-~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~  521 (766)
                      +-..++.+|..+++|||+||+|||+.... -.+++|+|||.++.+.++.   +.    --+-+++.|++++.+...-...
T Consensus       673 IL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEks---FR----rsVVGTPAYLaPEVLrnkGyNr  745 (888)
T KOG4236|consen  673 ILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKS---FR----RSVVGTPAYLAPEVLRNKGYNR  745 (888)
T ss_pred             HHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchhh---hh----hhhcCCccccCHHHHhhccccc
Confidence            33457889999999999999999997522 2589999999999998742   22    2245699999999888766677


Q ss_pred             CCCHHHHHHHHHH
Q 004234          522 TGDTTAVRRTAQF  534 (766)
Q Consensus       522 ~~D~~~l~~~i~~  534 (766)
                      ..|++++...++.
T Consensus       746 SLDMWSVGVIiYV  758 (888)
T KOG4236|consen  746 SLDMWSVGVIIYV  758 (888)
T ss_pred             cccceeeeEEEEE
Confidence            8899888765543

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.57  E-value=6.4e-15  Score=168.61  Aligned_cols=194  Identities=20%  Similarity=0.212  Sum_probs=135.3

Q ss_pred             ccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          295 RFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       295 ~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      .+..+-+|.|++|+||+++.  +|+.||||+-++.....                           +        .+...
T Consensus        15 W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r---------------------------~--------~e~~~   59 (732)
T KOG4250|consen   15 WEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLR---------------------------P--------RERWC   59 (732)
T ss_pred             eeehhhhcCCccceeeeecccccccchhHHhhhhhcccc---------------------------h--------HHHHH
Confidence            34456899999999999997  69999999876532100                           0        01112


Q ss_pred             HHHHHHHHH--HHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhh--hhcCCCHHHHHHHHHH--
Q 004234          373 QEIDYTQEA--ANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSL--DELGVDRKRLGRYAVE--  444 (766)
Q Consensus       373 ~ElDf~~EA--~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l--~~~g~d~~~la~~lv~--  444 (766)
                      +|++..+..  .|+.+..         .+|..-.  --+...||+||||.|++|.....-  ...|+....+...+.+  
T Consensus        60 ~EieilkKLnh~NIVk~f---------~iee~~~~~~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~  130 (732)
T KOG4250|consen   60 REIEILKKLNHPNIVKLF---------DIEETKFLGLVTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLV  130 (732)
T ss_pred             HHHHHHHHcCchhhhhhc---------ccCCccccCcccccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHH
Confidence            233222221  2333221         1111110  125567999999999999987543  3356777777666644  


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCc--EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCC
Q 004234          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGR--LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVP  521 (766)
Q Consensus       445 ~~l~qI~~~GffHaDpHPGNILV~~~~~g~--l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~-lG~~~~  521 (766)
                      ..++.++++|++|||+|||||++-...+|+  -+|+|||.++.+++..   .   +. -+-++.+|+.|.+.+ -+..+.
T Consensus       131 ~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s---~---~~-S~vGT~~YLhPel~E~q~~y~~  203 (732)
T KOG4250|consen  131 SALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNS---L---FT-SLVGTEEYLHPELYERQKKYTA  203 (732)
T ss_pred             HHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccccccCCCCC---e---ee-eecCchhhcChHHHhhccCcCc
Confidence            458889999999999999999997645565  5799999999999875   1   22 235799999999999 488888


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 004234          522 TGDTTAVRRTAQFFLNSF  539 (766)
Q Consensus       522 ~~D~~~l~~~i~~~l~~~  539 (766)
                      ..|.++|...+++....+
T Consensus       204 tVDLWS~GvtlY~caTG~  221 (732)
T KOG4250|consen  204 TVDLWSFGVTLYECATGE  221 (732)
T ss_pred             eeehhhhhhHHHHHhccC
Confidence            999999999888776543

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.57  E-value=3.2e-14  Score=154.45  Aligned_cols=183  Identities=15%  Similarity=0.133  Sum_probs=124.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+..-       +.                           +     ....-+
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~-------~~---------------------------~-----~~~~~~   64 (329)
T PTZ00263         24 ETLGTGSFGRVRIAKHKGTGEYYAIKCLKKRE-------IL---------------------------K-----MKQVQH   64 (329)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHH-------Hh---------------------------h-----hhhHHH
Confidence            6899999999999999  58999999874210       00                           0     000012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +.+|...+.++     +++++.-..-+.......+++|||++|++|.+.... ...+....+....  +-..+..+|..|
T Consensus        65 ~~~E~~~l~~l-----~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~  138 (329)
T PTZ00263         65 VAQEKSILMEL-----SHPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRK-AGRFPNDVAKFYHAELVLAFEYLHSKD  138 (329)
T ss_pred             HHHHHHHHHhC-----CCCCCCcEEEEEEcCCEEEEEEcCCCCChHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34455444443     223332222222345677999999999999876432 1223333222222  223478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  ++.++|+|||++..+.....         ...+.+.++++++......+...|++++...+.+
T Consensus       139 ivH~dlkp~NIll~~--~~~~kl~Dfg~~~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  207 (329)
T PTZ00263        139 IIYRDLKPENLLLDN--KGHVKVTDFGFAKKVPDRTF---------TLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYE  207 (329)
T ss_pred             eeecCCCHHHEEECC--CCCEEEeeccCceEcCCCcc---------eecCChhhcCHHHHcCCCCCCcceeechHHHHHH
Confidence            999999999999985  89999999999988765432         1246788999999887777788999999988776


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       208 llt  210 (329)
T PTZ00263        208 FIA  210 (329)
T ss_pred             HHc
Confidence            653

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.57  E-value=2.2e-14  Score=148.06  Aligned_cols=186  Identities=19%  Similarity=0.151  Sum_probs=121.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|++  +|+.||+|+.+......                                   .      +-+
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~-----------------------------------~------~~~   39 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPD-----------------------------------L------KAK   39 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHH-----------------------------------H------HHH
Confidence            3689999999999998  69999999764322111                                   1      113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      |.+|.+.+.++     +++++.-..-+.......++||||++|++|.++........+...+...+.+  ..+..+|..|
T Consensus        40 ~~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~  114 (252)
T cd05084          40 FLQEARILKQY-----SHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKH  114 (252)
T ss_pred             HHHHHHHHHhC-----CCCCcceEEEEEcCCCCeEEEEeeccCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            34444444333     2233322222223445679999999999999875433333454444333332  3367789999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|+||+++.  ++.++++|||++..+.......    ..+.......+++++....+..+...|++++...+.+
T Consensus       115 i~H~dl~p~nil~~~--~~~~kl~dfg~~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e  188 (252)
T cd05084         115 CIHRDLAARNCLVTE--KNVLKISDFGMSREEEDGVYAS----TGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWE  188 (252)
T ss_pred             ccccccchheEEEcC--CCcEEECccccCcccccccccc----cCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHH
Confidence            999999999999985  8899999999988765321110    0011122345788888877777778899999887766


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       189 ~~  190 (252)
T cd05084         189 AF  190 (252)
T ss_pred             HH
Confidence            55

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.56  E-value=5.7e-14  Score=141.12  Aligned_cols=140  Identities=19%  Similarity=0.227  Sum_probs=102.0

Q ss_pred             ccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 004234          301 IAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQE  380 (766)
Q Consensus       301 IgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~E  380 (766)
                      ||+|++|.||+|.++|.+|+||+..+.....-..|                                  ...+...+.+|
T Consensus         2 ig~G~~~~vy~~~~~~~~~viK~~~~~~~~~~~~~----------------------------------~~~~~~~~~~E   47 (199)
T TIGR03724         2 IAKGAEAIIYLGDFLGLKAVIKERVPKSYRHPELD----------------------------------ERIRRERTRNE   47 (199)
T ss_pred             CCCCceEEEEEeecCCccEEEEEecCCcCcCchHH----------------------------------HHHHHHHHHHH
Confidence            78999999999999999999998754422110000                                  00111245667


Q ss_pred             HHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCC
Q 004234          381 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP  460 (766)
Q Consensus       381 A~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~GffHaDp  460 (766)
                      .+++..+.+     +++.+|.++.......+++|||++|.++.+......     ..++..+ ...+..+|..|++|+|+
T Consensus        48 ~~~l~~l~~-----~~i~~p~~~~~~~~~~~lv~e~~~g~~l~~~~~~~~-----~~~~~~i-~~~l~~lH~~gi~H~Dl  116 (199)
T TIGR03724        48 ARLLSRARK-----AGVNTPVVYDVDPDNKTIVMEYIEGKPLKDVIEEGN-----DELLREI-GRLVGKLHKAGIVHGDL  116 (199)
T ss_pred             HHHHHHHHH-----CCCCCCEEEEEECCCCEEEEEEECCccHHHHHhhcH-----HHHHHHH-HHHHHHHHHCCeecCCC
Confidence            777777654     357889988877778899999999999988643211     1333333 34567899999999999


Q ss_pred             CCCcEEEeecCCCcEEEEeecceeccCh
Q 004234          461 HPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       461 HPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (766)
                      ||+||+++   +++++++|||+++...+
T Consensus       117 ~~~Nil~~---~~~~~liDfg~a~~~~~  141 (199)
T TIGR03724       117 TTSNIIVR---DDKLYLIDFGLGKYSDE  141 (199)
T ss_pred             CcceEEEE---CCcEEEEECCCCcCCCc
Confidence            99999997   68899999999887654

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.56  E-value=2.9e-14  Score=154.80  Aligned_cols=185  Identities=14%  Similarity=0.115  Sum_probs=121.9

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||+|++|+||+|+.  +|+.||||+.++.....                                 .+      ....+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~---------------------------------~~------~~~~~   42 (328)
T cd05593           2 LLGKGTFGKVILVREKASGKYYAMKILKKEVIIA---------------------------------KD------EVAHT   42 (328)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hh------HHHHH
Confidence            589999999999998  58999999985321100                                 00      01133


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~Gf  455 (766)
                      .+|.+.+..+     +++++.-...+.......++||||++|++|.+.... ...++...+...+  +-..+..+|..|+
T Consensus        43 ~~E~~~l~~l-----~hp~iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~~LH~~~i  116 (328)
T cd05593          43 LTESRVLKNT-----RHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLSR-ERVFSEDRTRFYGAEIVSALDYLHSGKI  116 (328)
T ss_pred             HHHHHHHHhC-----CCCCCcceEEEEEcCCEEEEEEeCCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            4455444433     223332222223345667999999999999775432 1223443333322  2234788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|+||.||+++.  ++.++|+|||++.........      .....+.+.++++++...+......|++++...+.++
T Consensus       117 vHrDikp~NIll~~--~~~~kL~DfG~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el  188 (328)
T cd05593         117 VYRDLKLENLMLDK--DGHIKITDFGLCKEGITDAAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEM  188 (328)
T ss_pred             EecccCHHHeEECC--CCcEEEecCcCCccCCCcccc------cccccCCcCccChhhhcCCCCCccCCccccchHHHHH
Confidence            99999999999985  889999999998764322111      1112467788999988777777889999999877766


Q ss_pred             HH
Q 004234          536 LN  537 (766)
Q Consensus       536 l~  537 (766)
                      +.
T Consensus       189 lt  190 (328)
T cd05593         189 MC  190 (328)
T ss_pred             hh
Confidence            53

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.55  E-value=1.5e-15  Score=158.84  Aligned_cols=195  Identities=19%  Similarity=0.284  Sum_probs=142.0

Q ss_pred             HHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCC
Q 004234          276 TAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKS  353 (766)
Q Consensus       276 ~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~  353 (766)
                      +..+.=+..|.++++++|+-..  .+|.||+|.||+|.+  .|+.||||...      ++.                   
T Consensus        18 ~~~KLd~~sL~K~PEEVFDi~~--KLGEGSYGSV~KAIH~EsG~v~AIK~VP------V~s-------------------   70 (502)
T KOG0574|consen   18 DGFKLDSSALNKPPEEVFDIVG--KLGEGSYGSVHKAIHRESGHVLAIKKVP------VDT-------------------   70 (502)
T ss_pred             cccccChhhhcCChHHHHHHHH--HhcCCcchHHHHHHHhccCcEEEEEecC------ccc-------------------
Confidence            3445556778899999988665  599999999999999  69999999541      111                   


Q ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeecc--CCCeEEEEeecCCCChhhhhhhhhc
Q 004234          354 DGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY--TTPQILTMEYVPGIKINRIQSLDEL  431 (766)
Q Consensus       354 ~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~--st~~vLVMEyieG~~L~d~~~l~~~  431 (766)
                           |+.+|+.|+.  +.+++|                   .-+|.+.|..|  .+..++|||||..++++|+..++..
T Consensus        71 -----DLQEIIKEIS--IMQQC~-------------------S~yVVKYYGSYFK~sDLWIVMEYCGAGSiSDI~R~R~K  124 (502)
T KOG0574|consen   71 -----DLQEIIKEIS--IMQQCK-------------------SKYVVKYYGSYFKHSDLWIVMEYCGAGSISDIMRARRK  124 (502)
T ss_pred             -----hHHHHHHHHH--HHHHcC-------------------CchhhhhhhhhccCCceEeehhhcCCCcHHHHHHHhcC
Confidence                 3444444432  222221                   11233334333  3678999999999999999988887


Q ss_pred             CCCHHHHHHHHHHHH--HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHH
Q 004234          432 GVDRKRLGRYAVESY--LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV  509 (766)
Q Consensus       432 g~d~~~la~~lv~~~--l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v  509 (766)
                      .+...+++..+-...  ++.+|...-+|||+|.||||++.  +|..+|.|||.++++++.+..      ...+-+.+-.|
T Consensus       125 ~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT--~G~AKLADFGVAGQLTDTMAK------RNTVIGTPFWM  196 (502)
T KOG0574|consen  125 PLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNT--DGIAKLADFGVAGQLTDTMAK------RNTVIGTPFWM  196 (502)
T ss_pred             CccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcc--cchhhhhhccccchhhhhHHh------hCccccCcccc
Confidence            788888877765544  78888888999999999999985  899999999999999886543      22345678888


Q ss_pred             HHHHHH-cCCCCCCCCHHHHHHHH
Q 004234          510 LQAMVQ-MGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       510 ~~~l~~-lG~~~~~~D~~~l~~~i  532 (766)
                      ++++++ .|+ ....|++++.-..
T Consensus       197 APEVI~EIGY-~~~ADIWSLGITa  219 (502)
T KOG0574|consen  197 APEVIEEIGY-DTKADIWSLGITA  219 (502)
T ss_pred             cHHHHHHhcc-chhhhHhhhcchh
Confidence            887765 565 4456888776443

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.55  E-value=2.6e-14  Score=154.61  Aligned_cols=184  Identities=15%  Similarity=0.103  Sum_probs=120.2

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||+|++|.||+|+.  +|+.||||+.++.....                            .    .+       ...+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~----------------------------~----~~-------~~~~   42 (323)
T cd05571           2 LLGKGTFGKVILVREKATGKYYAMKILKKEVIIA----------------------------K----DE-------VAHT   42 (323)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh----------------------------h----HH-------HHHH
Confidence            589999999999998  59999999884311000                            0    00       0122


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~Gf  455 (766)
                      ..|.+.+.++     +++++.-..-+.+.....+|||||++|++|.+.... ...++...+...+  +-..++.+|..|+
T Consensus        43 ~~e~~~l~~l-----~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~i  116 (323)
T cd05571          43 LTESRVLQNT-----RHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSR-ERVFSEDRARFYGAEIVSALGYLHSCDV  116 (323)
T ss_pred             HHHHHHHHhC-----CCCCCCCEEEEEEcCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            3444444333     223332222223345567999999999999876432 2223333333322  2234788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|+||.||+++.  ++.++|+|||++.........      .....+++.++++++......+...|++++...+.++
T Consensus       117 vHrDlkp~NIll~~--~~~~kl~DfG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  188 (323)
T cd05571         117 VYRDLKLENLMLDK--DGHIKITDFGLCKEGISDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEM  188 (323)
T ss_pred             EeCCCCHHHEEECC--CCCEEEeeCCCCcccccCCCc------ccceecCccccChhhhcCCCCCccccCcccchhhhhh
Confidence            99999999999985  889999999998754221111      1112467788999988766677789999998877665


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       189 l  189 (323)
T cd05571         189 M  189 (323)
T ss_pred             h
Confidence            4

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.55  E-value=2.1e-14  Score=160.36  Aligned_cols=179  Identities=21%  Similarity=0.222  Sum_probs=130.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +-||.||||.||+|+.  +++.||+|....--+  -+.|                                -+.+.+|++
T Consensus         8 e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr--~~k~--------------------------------l~~l~~ev~   53 (808)
T KOG0597|consen    8 EMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGR--NEKE--------------------------------LKNLRQEVR   53 (808)
T ss_pred             HHhcCCccceeeecccccceeEEEEEEehhcCC--chHH--------------------------------HHHHHHHHH
Confidence            4699999999999999  589999998721100  0111                                134556666


Q ss_pred             HHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH---HHHHHHHHH
Q 004234          377 YTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA---VESYLEQIL  451 (766)
Q Consensus       377 f~~EA~--Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l---v~~~l~qI~  451 (766)
                      ..++.+  |+..|.+-|..             +++.++|.||+.| .|..+...+.  --+++.++.+   +-..++.+|
T Consensus        54 i~r~lkHpniv~m~esfEt-------------~~~~~vVte~a~g-~L~~il~~d~--~lpEe~v~~~a~~LVsaL~yLh  117 (808)
T KOG0597|consen   54 ILRSLKHPNIVEMLESFET-------------SAHLWVVTEYAVG-DLFTILEQDG--KLPEEQVRAIAYDLVSALYYLH  117 (808)
T ss_pred             HHHhcCCcchhhHHHhhcc-------------cceEEEEehhhhh-hHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHH
Confidence            666654  66666665543             5678999999999 7777654322  1222222222   223488899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..++.|+|+||.||++..  +|.++++|||+++-++...      .+..-+.+++-||++++.+-+...-..|++++.-.
T Consensus       118 s~rilhrd~kPqniLl~~--~~~~KlcdFg~Ar~m~~~t------~vltsikGtPlYmAPElv~e~pyd~~sDlWslGci  189 (808)
T KOG0597|consen  118 SNRILHRDMKPQNILLEK--GGTLKLCDFGLARAMSTNT------SVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCI  189 (808)
T ss_pred             hcCcccccCCcceeeecC--CCceeechhhhhhhcccCc------eeeeeccCcccccCHHHHcCCCccchhhHHHHHHH
Confidence            999999999999999985  8999999999999887643      23445689999999999998888888899999987


Q ss_pred             HHHH
Q 004234          532 AQFF  535 (766)
Q Consensus       532 i~~~  535 (766)
                      ++++
T Consensus       190 lYE~  193 (808)
T KOG0597|consen  190 LYEL  193 (808)
T ss_pred             HHHH
Confidence            7664

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.55  E-value=4.6e-14  Score=149.53  Aligned_cols=185  Identities=16%  Similarity=0.105  Sum_probs=124.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|..  +|+.||||+........                                       ...+..
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~---------------------------------------~~~~~~   46 (285)
T cd05631           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK---------------------------------------RKGEAM   46 (285)
T ss_pred             EEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhh---------------------------------------hhhHHH
Confidence            5799999999999998  69999999873321100                                       011223


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|.+.+.++.    +..-+.+...+ ......+++|||++|++|.+.... .....+...+...+.+  ..+..+|..
T Consensus        47 ~~~E~~il~~l~----~~~iv~~~~~~-~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~  121 (285)
T cd05631          47 ALNEKRILEKVN----SRFVVSLAYAY-ETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRE  121 (285)
T ss_pred             HHHHHHHHHhcC----CCcEEEEEEEE-ccCCeEEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            445666555542    21112222222 334567999999999999875432 1223444444333322  347788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|.||+++.  ++.++|+|||++..++.....       .-..+...++++++...+..+...|++++...+.
T Consensus       122 ~iiH~dikp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~-------~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~  192 (285)
T cd05631         122 RIVYRDLKPENILLDD--RGHIRISDLGLAVQIPEGETV-------RGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIY  192 (285)
T ss_pred             CEEeCCCCHHHEEECC--CCCEEEeeCCCcEEcCCCCee-------cCCCCCCCccCHhhhcCCCCCcccCchhHHHHHH
Confidence            9999999999999985  789999999999876543211       0123567788999888777788899999998776


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       193 el~  195 (285)
T cd05631         193 EMI  195 (285)
T ss_pred             HHH
Confidence            655

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.55  E-value=5.1e-14  Score=152.26  Aligned_cols=186  Identities=22%  Similarity=0.198  Sum_probs=119.2

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||+|++|+||+|+.  +|+.||||+.++.....   +                             ++. .      .+
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---~-----------------------------~~~-~------~~   42 (320)
T cd05590           2 VLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQ---D-----------------------------DDV-E------CT   42 (320)
T ss_pred             eeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhh---c-----------------------------cHH-H------HH
Confidence            589999999999998  58999999875321000   0                             000 0      11


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~Gf  455 (766)
                      ..|...+...    .++++|.-..-+.+.....++||||++|++|.+.... ...++...+...+  +-..+..+|..|+
T Consensus        43 ~~e~~~l~~~----~~h~~iv~~~~~~~~~~~~~iv~Ey~~~g~L~~~i~~-~~~l~~~~~~~~~~ql~~~L~~lH~~~i  117 (320)
T cd05590          43 MTEKRILSLA----RNHPFLTQLYCCFQTPDRLFFVMEFVNGGDLMFHIQK-SRRFDEARARFYAAEITSALMFLHDKGI  117 (320)
T ss_pred             HHHHHHHHhc----cCCCchhceeeEEEcCCEEEEEEcCCCCchHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            2222222211    1233322111122334567999999999999875432 2234444333333  2234788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|+||.||+++.  ++.++|+|||++.........      .....+++.++++++.......+..|++++...+.++
T Consensus       118 vH~dlkp~NIli~~--~~~~kL~DfG~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el  189 (320)
T cd05590         118 IYRDLKLDNVLLDH--EGHCKLADFGMCKEGIFNGKT------TSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEM  189 (320)
T ss_pred             EeCCCCHHHeEECC--CCcEEEeeCCCCeecCcCCCc------ccccccCccccCHHHHcCCCCCCccchhhhHHHHHHH
Confidence            99999999999986  889999999998764322111      1112467889999998777777888999999877766


Q ss_pred             HH
Q 004234          536 LN  537 (766)
Q Consensus       536 l~  537 (766)
                      +.
T Consensus       190 ~~  191 (320)
T cd05590         190 LC  191 (320)
T ss_pred             hh
Confidence            53

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.55  E-value=4.2e-14  Score=161.64  Aligned_cols=230  Identities=17%  Similarity=0.150  Sum_probs=156.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..+|.||||.|+.|.+  +++.+|||+++.+.--+                         .       |++. .      
T Consensus       374 ~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~-------------------------~-------d~Ve-~------  414 (694)
T KOG0694|consen  374 AVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQ-------------------------R-------DEVE-S------  414 (694)
T ss_pred             EEeccCcCceEEEEEEcCCCcEEEEEEeeccceec-------------------------c-------ccHH-H------
Confidence            5799999999999999  58899999996553110                         0       1111 1      


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCcc
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFF  456 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~Gff  456 (766)
                      ...|.+..+...    .+|.+.--..-++-.++.+.||||+.|+.+..+...+.....+.+....-+-..|+.+|++||+
T Consensus       415 ~~~EkrI~~la~----~HPFL~~L~~~fQT~~~l~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~II  490 (694)
T KOG0694|consen  415 LMCEKRIFELAN----RHPFLVNLFSCFQTKEHLFFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENGII  490 (694)
T ss_pred             HHHHHHHHHHhc----cCCeEeecccccccCCeEEEEEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhcCce
Confidence            122333222221    2333322222233345679999999999977665444443445555555556678999999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccC-hhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSIS-PNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~-~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +||+|-.|||++.  +|.++|.||||++.-- ...+       .+...+++++|+++.+.-+..+...|-++|...++++
T Consensus       491 YRDlKLdNiLLD~--eGh~kiADFGlcKe~m~~g~~-------TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeM  561 (694)
T KOG0694|consen  491 YRDLKLDNLLLDT--EGHVKIADFGLCKEGMGQGDR-------TSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEM  561 (694)
T ss_pred             eeecchhheEEcc--cCcEEecccccccccCCCCCc-------cccccCChhhcChhhhccCcccchhhHHHHHHHHHHH
Confidence            9999999999986  9999999999998743 2222       2345679999999999999999999999999888776


Q ss_pred             HHHHHHHHHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCchhhhhhhhhhhHh
Q 004234          536 LNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLD  609 (766)
Q Consensus       536 l~~~~~~l~~~r~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~~~~ll~Ral~~lE  609 (766)
                      |-.                 +    .|+.-+.        =.++++.|...=..|++.++.+.+.++|.+++-.
T Consensus       562 L~G-----------------q----~PF~gdd--------Eee~FdsI~~d~~~yP~~ls~ea~~il~~ll~k~  606 (694)
T KOG0694|consen  562 LVG-----------------E----SPFPGDD--------EEEVFDSIVNDEVRYPRFLSKEAIAIMRRLLRKN  606 (694)
T ss_pred             HcC-----------------C----CCCCCCC--------HHHHHHHHhcCCCCCCCcccHHHHHHHHHHhccC
Confidence            632                 1    1222110        0134455554445688999999999999887654

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.55  E-value=1.6e-14  Score=158.29  Aligned_cols=192  Identities=17%  Similarity=0.172  Sum_probs=122.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+.+..-       +         .                 -.+...      .
T Consensus         7 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-------~---------~-----------------~~~~~~------~   47 (364)
T cd05599           7 KVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSE-------M---------L-----------------EKEQVA------H   47 (364)
T ss_pred             EEEEecCCEEEEEEEECCCCCEEEEEEEEHHH-------h---------h-----------------hhhHHH------H
Confidence            6799999999999998  58999999873210       0         0                 000111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|...+..+.     ++++.-..-+.......+|||||++|++|.++... ...++...+...+.+  ..+..+|..|
T Consensus        48 ~~~E~~il~~l~-----h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~~lH~~~  121 (364)
T cd05599          48 VRAERDILAEAD-----NPWVVKLYYSFQDENYLYLIMEYLPGGDMMTLLMK-KDTFTEEETRFYIAETILAIDSIHKLG  121 (364)
T ss_pred             HHHHHHHHHhCC-----CCCCcceEEEEEcCCeEEEEECCCCCcHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            233333333321     23332222222334567999999999999886532 223444433333322  3477899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHH--------------------------------HHHHh
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA--------------------------------FYGIY  502 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l--------------------------------~~a~~  502 (766)
                      ++|+|+||+||+++.  +|.++|+|||++..+...........                                .....
T Consensus       122 ivH~Dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (364)
T cd05599         122 YIHRDIKPDNLLLDA--KGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYST  199 (364)
T ss_pred             eEeccCCHHHeEECC--CCCEEEeecccceeccccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence            999999999999986  89999999999876643221110000                                00012


Q ss_pred             hcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          503 EKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       503 ~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      .+++.++++++..-+..+...|++++...+.+++.
T Consensus       200 ~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~  234 (364)
T cd05599         200 VGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLV  234 (364)
T ss_pred             ccCccccCHHHHcCCCCCCeeeeecchhHHHHhhc
Confidence            36778899998877667788999999987776653

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.55  E-value=5.3e-14  Score=149.66  Aligned_cols=181  Identities=20%  Similarity=0.174  Sum_probs=119.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|..  +|+.||||+....-...                                       ....-.
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------------~~~~~~   47 (291)
T cd05612           7 KTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIR---------------------------------------LKQEQH   47 (291)
T ss_pred             eeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhh---------------------------------------hHHHHH
Confidence            6799999999999998  59999999873210000                                       000112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~  452 (766)
                      +.+|...+.++.     +++|  ++++.  ......+++|||++|++|.++.... ..++.......+.  -..+..+|.
T Consensus        48 ~~~E~~~l~~l~-----hp~i--v~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~  119 (291)
T cd05612          48 VHNEKRVLKEVS-----HPFI--IRLFWTEHDQRFLYMLMEYVPGGELFSYLRNS-GRFSNSTGLFYASEIVCALEYLHS  119 (291)
T ss_pred             HHHHHHHHHhCC-----CCcH--hhhHhhhccCCeEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            333443333331     1222  22222  2234578999999999998865322 2233333333222  234788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      .|++|+|++|.||+++.  +|.++|+|||++..+......         ..+++.++++++......+...|++++...+
T Consensus       120 ~~i~H~dlkp~NIli~~--~~~~kl~Dfg~~~~~~~~~~~---------~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il  188 (291)
T cd05612         120 KEIVYRDLKPENILLDK--EGHIKLTDFGFAKKLRDRTWT---------LCGTPEYLAPEVIQSKGHNKAVDWWALGILI  188 (291)
T ss_pred             CCeeecCCCHHHeEECC--CCCEEEEecCcchhccCCccc---------ccCChhhcCHHHHcCCCCCchhhHHHHHHHH
Confidence            99999999999999985  889999999999877543211         2357788899988766667788999999877


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       189 ~~l~~  193 (291)
T cd05612         189 YEMLV  193 (291)
T ss_pred             HHHHh
Confidence            76653

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.55  E-value=3.1e-14  Score=154.01  Aligned_cols=185  Identities=18%  Similarity=0.146  Sum_probs=118.1

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||.|++|.||+|+.  +|+.||+|+........                                       -..+.++
T Consensus         2 ~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------------~~~~~~~   42 (325)
T cd05602           2 VIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILK---------------------------------------KKEEKHI   42 (325)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHh---------------------------------------hhHHHHH
Confidence            589999999999998  58899999874210000                                       0011122


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~Gf  455 (766)
                      ..|...   +...+. ++++.-...+.......+++|||++|++|.+..... .......+...+  +-..+..+|..|+
T Consensus        43 ~~e~~~---~l~~~~-h~~Iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~gi  117 (325)
T cd05602          43 MSERNV---LLKNVK-HPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE-RCFLEPRARFYAAEIASALGYLHSLNI  117 (325)
T ss_pred             HHHHHH---HHHhCC-CCCCCceeEEEEcCCeEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            222221   112222 233322222223456679999999999998765321 223333322222  2234788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|+||+||+++.  ++.++|+|||++.........      .....+++.++++++...+......|++++...+.++
T Consensus       118 iHrDlkp~Nili~~--~~~~kl~DfG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el  189 (325)
T cd05602         118 VYRDLKPENILLDS--QGHIVLTDFGLCKENIEHNGT------TSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEM  189 (325)
T ss_pred             EecCCCHHHeEECC--CCCEEEccCCCCcccccCCCC------cccccCCccccCHHHHcCCCCCCccccccccHHHHHH
Confidence            99999999999985  889999999998764322110      1112467788999998877777789999998877666


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       190 ~  190 (325)
T cd05602         190 L  190 (325)
T ss_pred             h
Confidence            5

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.55  E-value=4.8e-14  Score=152.79  Aligned_cols=86  Identities=15%  Similarity=0.071  Sum_probs=64.3

Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004234          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (766)
Q Consensus       445 ~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D  524 (766)
                      ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......    ..+.......++++++...+..+...|
T Consensus       185 ~aL~~LH~~~ivHrDiKp~Nil~~~--~~~~kl~DfG~a~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~sD  258 (338)
T cd05102         185 RGMEFLASRKCIHRDLAARNILLSE--NNVVKICDFGLARDIYKDPDYV----RKGSARLPLKWMAPESIFDKVYTTQSD  258 (338)
T ss_pred             HHHHHHHHCCEECCCCccceEEEcC--CCcEEEeecccccccccCcchh----cccCCCCCccccCcHHhhcCCCCcccC
Confidence            3478889999999999999999986  8899999999998764332110    011112335678888887777788899


Q ss_pred             HHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFL  536 (766)
Q Consensus       525 ~~~l~~~i~~~l  536 (766)
                      ++++...+.+++
T Consensus       259 iwslG~il~el~  270 (338)
T cd05102         259 VWSFGVLLWEIF  270 (338)
T ss_pred             HHHHHHHHHHHH
Confidence            999998776654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.55  E-value=5.9e-14  Score=151.54  Aligned_cols=186  Identities=21%  Similarity=0.150  Sum_probs=119.0

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||.|++|+||+|+.  +|+.||||+.+.+....                                 ++..      -.+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~------~~~   42 (321)
T cd05591           2 VLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQ---------------------------------DDDV------DCT   42 (321)
T ss_pred             ccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhh---------------------------------hhHH------HHH
Confidence            589999999999998  48899999874321100                                 0000      012


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~Gf  455 (766)
                      ..|.+-+..    ..++++|....-+.+.....+|||||++|++|.+.... ...++...+...+  +-..+..+|..|+
T Consensus        43 ~~e~~il~~----~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~i  117 (321)
T cd05591          43 MTEKRILAL----AAKHPFLTALHCCFQTKDRLFFVMEYVNGGDLMFQIQR-SRKFDEPRSRFYAAEVTLALMFLHRHGV  117 (321)
T ss_pred             HHHHHHHHh----ccCCCCccceeeEEEcCCeEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            223222222    12334332222222334567999999999999875432 2223433333332  2234788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|++|.||+++.  ++.++|+|||++.........      .....+...++++++.......+..|++++...+.++
T Consensus       118 vHrDikp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el  189 (321)
T cd05591         118 IYRDLKLDNILLDA--EGHCKLADFGMCKEGILNGVT------TTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEM  189 (321)
T ss_pred             eccCCCHHHeEECC--CCCEEEeecccceecccCCcc------ccccccCccccCHHHHcCCCCCCccceechhHHHHHH
Confidence            99999999999986  899999999998764322111      1112357788899988776677889999999877766


Q ss_pred             HH
Q 004234          536 LN  537 (766)
Q Consensus       536 l~  537 (766)
                      +.
T Consensus       190 ~t  191 (321)
T cd05591         190 MA  191 (321)
T ss_pred             hc
Confidence            53

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.54  E-value=3.2e-14  Score=153.87  Aligned_cols=185  Identities=18%  Similarity=0.174  Sum_probs=118.0

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||.|++|+||+|+.  +|+.||||+.+......                                 .+      ....+
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~------~~~~~   42 (325)
T cd05604           2 VIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLN---------------------------------RK------EQKHI   42 (325)
T ss_pred             ceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hh------HHHHH
Confidence            589999999999998  69999999874321000                                 00      00111


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~Gf  455 (766)
                      ..|...   +.+.+.+ +++.-..-+.+.....+++|||++|+.|.+.... ...++...+...+  +-..+..+|..|+
T Consensus        43 ~~e~~~---~l~~~~h-p~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~al~~lH~~gi  117 (325)
T cd05604          43 MAERNV---LLKNVKH-PFLVGLHYSFQTTEKLYFVLDFVNGGELFFHLQR-ERSFPEPRARFYAAEIASALGYLHSINI  117 (325)
T ss_pred             HHHHHH---HHHhCCC-CCCccEEEEEecCCEEEEEEcCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            222111   1122222 3322111122345678999999999998765432 2223433333322  2234788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|+||+||+++.  +|.++|+|||++.........      .....++..++++++...+......|++++...+.++
T Consensus       118 vH~Dlkp~NIll~~--~~~~kL~DfG~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el  189 (325)
T cd05604         118 VYRDLKPENILLDS--QGHVVLTDFGLCKEGIAQSDT------TTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEM  189 (325)
T ss_pred             eecCCCHHHeEECC--CCCEEEeecCCcccCCCCCCC------cccccCChhhCCHHHHcCCCCCCcCccccccceehhh
Confidence            99999999999986  889999999998754221111      0112467889999998877777889999998777665


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       190 ~  190 (325)
T cd05604         190 L  190 (325)
T ss_pred             h
Confidence            5

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.54  E-value=4.1e-14  Score=157.23  Aligned_cols=188  Identities=18%  Similarity=0.203  Sum_probs=127.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..||+|+||.|+.|+.  +|+.||||+......                    ...   .        ......+.    
T Consensus        23 ~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~--------------------~~~---~--------~~~~~~i~----   67 (370)
T KOG0583|consen   23 RTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKV--------------------SSK---S--------QKLDELIK----   67 (370)
T ss_pred             eeecCCCCeeEEEeeeccCCCeEEEEEechhcc--------------------ccc---c--------cccchhhH----
Confidence            6899999999999988  699999997633200                    000   0        00111222    


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH---HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE---SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~---~~l~qI~~~  453 (766)
                        +|..++.++.    .+|+|.--.-+.+..+..++||||+.|+.|-+.... ...+.. ..++..++   ..+.++|..
T Consensus        68 --rEi~~~~~~~----~HpnI~~l~ev~~t~~~~~ivmEy~~gGdL~~~i~~-~g~l~E-~~ar~~F~Qlisav~y~H~~  139 (370)
T KOG0583|consen   68 --REISILRRLR----SHPNIIRLLEVFATPTKIYIVMEYCSGGDLFDYIVN-KGRLKE-DEARKYFRQLISAVAYCHSR  139 (370)
T ss_pred             --HHHHHHHHhc----cCCCEeEEEEEEecCCeEEEEEEecCCccHHHHHHH-cCCCCh-HHHHHHHHHHHHHHHHHHhC
Confidence              3445555543    234443333333456678999999999998886543 222222 33443333   336778999


Q ss_pred             CccccCCCCCcEEEeecCC-CcEEEEeecceeccC-hhhHHHHHHHHHHHhhcCHHHHHHHHHHc-C-CCCCCCCHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNG-GRLIFYDFGMMGSIS-PNIREGLLEAFYGIYEKDADKVLQAMVQM-G-VLVPTGDTTAVR  529 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~-g~l~LiDFGlv~~L~-~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G-~~~~~~D~~~l~  529 (766)
                      |++|||+||+||+++.  + +.++|+|||++.... +..   +    .....+.+.|++++++.. + +.....|++++.
T Consensus       140 gi~HRDLK~ENilld~--~~~~~Kl~DFG~s~~~~~~~~---~----l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~G  210 (370)
T KOG0583|consen  140 GIVHRDLKPENILLDG--NEGNLKLSDFGLSAISPGEDG---L----LKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLG  210 (370)
T ss_pred             CEeeCCCCHHHEEecC--CCCCEEEeccccccccCCCCC---c----ccCCCCCcccCCHHHhCCCCCcCCchhhhhhhH
Confidence            9999999999999986  5 899999999999884 221   1    333567999999999987 5 556778999999


Q ss_pred             HHHHHHHHH
Q 004234          530 RTAQFFLNS  538 (766)
Q Consensus       530 ~~i~~~l~~  538 (766)
                      ..++.++..
T Consensus       211 ViLy~ml~G  219 (370)
T KOG0583|consen  211 VILYVLLCG  219 (370)
T ss_pred             HHHHHHHhC
Confidence            888776643

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.54  E-value=1.3e-14  Score=159.26  Aligned_cols=189  Identities=17%  Similarity=0.194  Sum_probs=120.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.++.-..                                 -.+...      .
T Consensus         7 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~---------------------------------~~~~~~------~   47 (360)
T cd05627           7 KVIGRGAFGEVRLVQKKDTGHIYAMKILRKADML---------------------------------EKEQVA------H   47 (360)
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHh---------------------------------hhhhHH------H
Confidence            6799999999999998  5899999988421000                                 000111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      +..|...+..+    . +++  +++.+.  +.....+|||||++|++|.++... ...++...+...+.+  ..+..+|.
T Consensus        48 ~~~e~~~l~~l----~-~~~--iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~~L~~lH~  119 (360)
T cd05627          48 IRAERDILVEA----D-GAW--VVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMK-KDTLSEEATQFYIAETVLAIDAIHQ  119 (360)
T ss_pred             HHHHHHHHHhC----C-CCC--EeeEEEEEEcCCEEEEEEeCCCCccHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            23333333322    1 222  333333  233457999999999999886532 222343333332222  34788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHH-----------------------------HHHHhh
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA-----------------------------FYGIYE  503 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l-----------------------------~~a~~~  503 (766)
                      .|++|+|+||+||+++.  +|.++|+|||++..+.......+..-                             ......
T Consensus       120 ~givHrDLkp~NIli~~--~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (360)
T cd05627         120 LGFIHRDIKPDNLLLDA--KGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTV  197 (360)
T ss_pred             CCeEccCCCHHHEEECC--CCCEEEeeccCCcccccccccccccccccCCcccccccccccccccccccccccccccccC
Confidence            99999999999999985  89999999999887643322111000                             000123


Q ss_pred             cCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          504 KDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       504 ~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ++..++++++..-...+...|++++...+.+++
T Consensus       198 gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~  230 (360)
T cd05627         198 GTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEML  230 (360)
T ss_pred             CCccccCHHHHcCCCCCCcceeccccceeeecc
Confidence            677899999887666777889999987766654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.54  E-value=3.1e-14  Score=157.70  Aligned_cols=192  Identities=15%  Similarity=0.113  Sum_probs=119.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.+..-..                                 -.+...      .
T Consensus         7 ~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~---------------------------------~~~~~~------~   47 (381)
T cd05626           7 KTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVL---------------------------------NRNQVA------H   47 (381)
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhh---------------------------------hhHHHH------H
Confidence            5799999999999998  5899999987421000                                 000111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +.+|...+.++     +++++.-..-+.......++||||++|+.|.++... ...++...+...+  +-..+..+|..|
T Consensus        48 ~~~E~~il~~l-----~h~~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~e~~~~~~~~qi~~aL~~LH~~g  121 (381)
T cd05626          48 VKAERDILAEA-----DNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIR-MEVFPEVLARFYIAELTLAIESVHKMG  121 (381)
T ss_pred             HHHHHHHHHhc-----CCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            33444433332     223322222222334567999999999999886432 1223332222222  233478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHH---------------------------------H-----
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL---------------------------------E-----  496 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~---------------------------------~-----  496 (766)
                      ++|+|+||.||+++.  +++++|+|||++..+.......+.                                 .     
T Consensus       122 ivHrDlKp~Nili~~--~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (381)
T cd05626         122 FIHRDIKPDNILIDL--DGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQ  199 (381)
T ss_pred             eeecCCcHHHEEECC--CCCEEEeeCcCCcccccccccccccccccccccccCcccccccccccccccccchhhcccccc
Confidence            999999999999985  889999999997654211100000                                 0     


Q ss_pred             ---HHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          497 ---AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       497 ---l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                         .......+...++++++..-.......|++++...+.+++.
T Consensus       200 ~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~ellt  243 (381)
T cd05626         200 HQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLV  243 (381)
T ss_pred             ccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHh
Confidence               00011236778999998876666778899999988777654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.54  E-value=6.2e-14  Score=151.33  Aligned_cols=185  Identities=17%  Similarity=0.123  Sum_probs=118.2

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||.|++|.||+|+.  +|+.||||+.+...... .                               ++..       .+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-~-------------------------------~~~~-------~~   42 (316)
T cd05592           2 VLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLE-D-------------------------------DDVE-------CT   42 (316)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh-h-------------------------------hhHH-------HH
Confidence            589999999999998  58899999985432100 0                               0000       01


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~~Gf  455 (766)
                      ..|...+.    ...+++++....-+.+.....++||||++|++|.+.... ...++...+...+.  -..+..+|..|+
T Consensus        43 ~~e~~~l~----~~~~hp~i~~~~~~~~~~~~~~lv~e~~~gg~L~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH~~~i  117 (316)
T cd05592          43 MVERRVLA----LAWEHPFLTHLFCTFQTKEHLFFVMEYLNGGDLMFHIQS-SGRFDEARARFYAAEIICGLQFLHKKGI  117 (316)
T ss_pred             HHHHHHHH----hccCCCCccceeeEEEcCCEEEEEEcCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            11111111    111233332222122334567999999999999876432 22344444333332  234788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|+||.||+++.  ++.++|+|||++.........      .....++..++++++......+...|++++...+.++
T Consensus       118 vH~dlkp~Nill~~--~~~~kL~Dfg~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el  189 (316)
T cd05592         118 IYRDLKLDNVLLDK--DGHIKIADFGMCKENMNGEGK------ASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEM  189 (316)
T ss_pred             EeCCCCHHHeEECC--CCCEEEccCcCCeECCCCCCc------cccccCCccccCHHHHcCCCCCCcccchhHHHHHHHH
Confidence            99999999999985  889999999998765332211      1112357788899988766677789999999877666


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       190 l  190 (316)
T cd05592         190 L  190 (316)
T ss_pred             H
Confidence            5

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.54  E-value=7.5e-14  Score=150.86  Aligned_cols=187  Identities=17%  Similarity=0.088  Sum_probs=121.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                 +.      ....
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~------~~~~   46 (323)
T cd05616           6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQ---------------------------------DD------DVEC   46 (323)
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hh------HHHH
Confidence            5799999999999998  57899999885321100                                 00      0001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +..|.+.+...    .+++.+....-+.+.....++||||++|++|.+.... ...++...+...+.+  ..+..+|..|
T Consensus        47 ~~~e~~~l~~~----~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~  121 (323)
T cd05616          47 TMVEKRVLALS----GKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQ-VGRFKEPHAVFYAAEIAIGLFFLHSKG  121 (323)
T ss_pred             HHHHHHHHHhc----cCCCeEeeEEEEEecCCEEEEEEcCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22233322222    2233332222222334567899999999999875432 122344443333332  3477889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||+||+++.  ++.++|+|||++.........      .....+++.++++++...+..+...|++++...+.+
T Consensus       122 ivHrDlkp~Nill~~--~~~~kL~DfG~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~e  193 (323)
T cd05616         122 IIYRDLKLDNVMLDS--EGHIKIADFGMCKENMWDGVT------TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYE  193 (323)
T ss_pred             EEecCCCHHHeEECC--CCcEEEccCCCceecCCCCCc------cccCCCChhhcCHHHhcCCCCCCccchhchhHHHHH
Confidence            999999999999986  889999999998764322111      111346788999999988878888999999988776


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       194 llt  196 (323)
T cd05616         194 MLA  196 (323)
T ss_pred             HHh
Confidence            653

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.54  E-value=4.4e-14  Score=152.69  Aligned_cols=185  Identities=18%  Similarity=0.191  Sum_probs=117.7

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||.|++|+||+|+.  +|+.||||+..+.....                                 ..      ...++
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~------~~~~~   42 (323)
T cd05575           2 VIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILK---------------------------------KK------EQKHI   42 (323)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhh---------------------------------hh------HHHHH
Confidence            589999999999999  59999999874321000                                 00      00112


Q ss_pred             HHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          378 TQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      ..|...   +.+.+.+ +++ .+-..+ +.....+++|||++|++|.+..... ..++...+...+  +-..+..+|..|
T Consensus        43 ~~e~~~---~~~~l~h-p~iv~~~~~~-~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~g  116 (323)
T cd05575          43 MAERNV---LLKNVKH-PFLVGLHYSF-QTADKLYFVLDYVNGGELFFHLQRE-RSFPEPRARFYAAEIASALGYLHSLN  116 (323)
T ss_pred             HHHHHH---HHhhCCC-CCCCCeeEEE-EeCCEEEEEEcCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            222211   1122222 322 222222 3345679999999999998754322 223333333222  223478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  ++.++|+|||++.........      .....+.+.++++++..-+..+...|++++...+.+
T Consensus       117 ivH~dikp~NIll~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~e  188 (323)
T cd05575         117 IIYRDLKPENILLDS--QGHVVLTDFGLCKEGIEHSKT------TSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYE  188 (323)
T ss_pred             eEeCCCCHHHeEECC--CCcEEEeccCCCcccccCCCc------cccccCChhhcChhhhcCCCCCccccccccchhhhh
Confidence            999999999999986  889999999998754221111      111235778889998877767778999999987776


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       189 ll~  191 (323)
T cd05575         189 MLY  191 (323)
T ss_pred             hhc
Confidence            653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.54  E-value=4.4e-14  Score=152.96  Aligned_cols=185  Identities=15%  Similarity=0.110  Sum_probs=120.2

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||.|++|.||+|+.  +|+.||+|+.+......                                 .+      ...++
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~------~~~~~   42 (323)
T cd05595           2 LLGKGTFGKVILVREKATGRYYAMKILRKEVIIA---------------------------------KD------EVAHT   42 (323)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hH------HHHHH
Confidence            589999999999998  59999999884321100                                 00      01123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~~Gf  455 (766)
                      ..|.+.+..+.     ++++.-..-........+|||||++|++|.+.... ...++...+...+.  -..+..+|..|+
T Consensus        43 ~~E~~~l~~l~-----hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~i  116 (323)
T cd05595          43 VTESRVLQNTR-----HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSR-ERVFTEERARFYGAEIVSALEYLHSRDV  116 (323)
T ss_pred             HHHHHHHHhCC-----CCCCcceeeEEecCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            34444444332     23222111122334567999999999999775432 22234443333322  234788899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|+||.||+++.  ++.++|+|||++.........      .....+++.++++++..-+......|++++...+.++
T Consensus       117 vH~Dlkp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~el  188 (323)
T cd05595         117 VYRDIKLENLMLDK--DGHIKITDFGLCKEGISDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEM  188 (323)
T ss_pred             EecCCCHHHEEEcC--CCCEEecccHHhccccCCCCc------cccccCCcCcCCcccccCCCCCchhchhhhHHHHHHH
Confidence            99999999999985  889999999988753221110      0112467778889888777777888999999877766


Q ss_pred             HH
Q 004234          536 LN  537 (766)
Q Consensus       536 l~  537 (766)
                      +.
T Consensus       189 l~  190 (323)
T cd05595         189 MC  190 (323)
T ss_pred             Hh
Confidence            53

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.53  E-value=1.2e-13  Score=146.00  Aligned_cols=185  Identities=15%  Similarity=0.116  Sum_probs=121.1

Q ss_pred             ccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       301 IgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      ||+|++|.||++..  +|+.||||+........                                 .      ...-.+.
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~---------------------------------~------~~~~~~~   41 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKK---------------------------------R------KGYEGAM   41 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhh---------------------------------h------HHHHHHH
Confidence            68999999999998  58999999863211000                                 0      0001234


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYA--VESYLEQILSH  453 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l---~~~g~d~~~la~~l--v~~~l~qI~~~  453 (766)
                      .|.+.+..+     +++++....-..+.....+++|||++|++|.+....   ....++...+...+  +-..+..+|..
T Consensus        42 ~E~~il~~l-----~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~  116 (280)
T cd05608          42 VEKRILAKV-----HSRFIVSLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR  116 (280)
T ss_pred             HHHHHHHhC-----CCCcEeeeeEEEcCCCeEEEEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            455555444     223332222222334567999999999999875421   11224444433333  22347789999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|.||+++.  ++.++++|||++..+.......      ....++..+++++....+..+...|++++...+.
T Consensus       117 ~i~H~dlkp~Nili~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~  188 (280)
T cd05608         117 RIIYRDLKPENVLLDN--DGNVRISDLGLAVELKDGQSKT------KGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLY  188 (280)
T ss_pred             CcccCCCCHHHEEECC--CCCEEEeeCccceecCCCCccc------cccCCCcCccCHHHhcCCCCCccccHHHHHHHHH
Confidence            9999999999999985  7899999999998765432210      1123567788899888777777899999998777


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       189 el~~  192 (280)
T cd05608         189 EMIA  192 (280)
T ss_pred             HHHh
Confidence            6653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.53  E-value=8.3e-14  Score=150.80  Aligned_cols=187  Identities=17%  Similarity=0.095  Sum_probs=120.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..||.|++|+||+|..  +|+.||||+.+......                                 ++      ..-.
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~------~~~~   46 (323)
T cd05615           6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQ---------------------------------DD------DVEC   46 (323)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hh------HHHH
Confidence            5799999999999998  58999999874211000                                 00      0012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +..|.+.+...    .+++.+..-..+.......+|||||++|++|.+.... ...++...+...+.+  ..+..+|..|
T Consensus        47 ~~~e~~~l~~~----~~~~~i~~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~-~~~l~~~~~~~i~~qi~~al~~lH~~~  121 (323)
T cd05615          47 TMVEKRVLALQ----DKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQ-VGKFKEPQAVFYAAEISVGLFFLHRRG  121 (323)
T ss_pred             HHHHHHHHHhc----cCCCchhheeeEEecCCEEEEEEcCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            23333333222    2223322111122334567999999999999876432 122344443333322  3478889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||+||+++.  ++.++|+|||++.........      .....++..++++++...+..+...|++++...+.+
T Consensus       122 ivHrDikp~Nill~~--~~~ikL~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~e  193 (323)
T cd05615         122 IIYRDLKLDNVMLDS--EGHIKIADFGMCKEHMVDGVT------TRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYE  193 (323)
T ss_pred             eeccCCCHHHeEECC--CCCEEEeccccccccCCCCcc------ccCccCCccccCHHHHcCCCCCCccchhhhHHHHHH
Confidence            999999999999986  889999999998764322110      011235778889999887777888999999987776


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       194 llt  196 (323)
T cd05615         194 MLA  196 (323)
T ss_pred             HHh
Confidence            653

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=1.5e-14  Score=150.67  Aligned_cols=182  Identities=16%  Similarity=0.150  Sum_probs=127.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.||||.||++..  +|..||.|-..=|                                  .+-..-+..+..|++
T Consensus        25 ~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~----------------------------------~md~k~rq~~v~Ei~   70 (375)
T KOG0591|consen   25 KKIGRGSFGEVYKVQCLLDGKLVALKKIQFG----------------------------------MMDAKARQDCVKEIS   70 (375)
T ss_pred             HHHcCCcchheEEeeeccCcchhhhhhcchh----------------------------------hccHHHHHHHHHHHH
Confidence            5799999999999998  7999999844211                                  111223344566777


Q ss_pred             HHHHHH--HHHHHHH-hcCCCCccccceeeeccCCC-eEEEEeecCCCChhhhhhhhhc---CCCHHHHHHHHHHHH--H
Q 004234          377 YTQEAA--NAELFAS-NFKDMDYVKVPTIFWEYTTP-QILTMEYVPGIKINRIQSLDEL---GVDRKRLGRYAVESY--L  447 (766)
Q Consensus       377 f~~EA~--Nl~~f~~-~f~~~~~V~vP~v~~e~st~-~vLVMEyieG~~L~d~~~l~~~---g~d~~~la~~lv~~~--l  447 (766)
                      ..+..+  |+.++.. .|...             .+ ..|||||++++.|+++...-+.   -+..+.+-...++.+  +
T Consensus        71 lLkQL~HpNIVqYy~~~f~~~-------------~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL  137 (375)
T KOG0591|consen   71 LLKQLNHPNIVQYYAHSFIED-------------NEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRAL  137 (375)
T ss_pred             HHHhcCCchHHHHHHHhhhcc-------------chhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHH
Confidence            776665  6666654 33221             22 4799999999999997643211   133344444444433  3


Q ss_pred             HHHHh--CC--ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004234          448 EQILS--HG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG  523 (766)
Q Consensus       448 ~qI~~--~G--ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~  523 (766)
                      ..+|.  ..  ++|||+||+||+++.  +|.++|.|||+.+.++.+..  +    .+..-++|.+|.|+.+.-.-....+
T Consensus       138 ~~cH~~~~r~~VmHRDIKPaNIFl~~--~gvvKLGDfGL~r~l~s~~t--f----A~S~VGTPyYMSPE~i~~~~Y~~kS  209 (375)
T KOG0591|consen  138 YHCHSKIPRGTVMHRDIKPANIFLTA--NGVVKLGDFGLGRFLSSKTT--F----AHSLVGTPYYMSPERIHESGYNFKS  209 (375)
T ss_pred             HHHhccccccceeeccCcchheEEcC--CCceeeccchhHhHhcchhH--H----HHhhcCCCcccCHHHHhcCCCCcch
Confidence            44444  33  999999999999986  89999999999999987643  2    2334579999999999877778899


Q ss_pred             CHHHHHHHHHHH
Q 004234          524 DTTAVRRTAQFF  535 (766)
Q Consensus       524 D~~~l~~~i~~~  535 (766)
                      |++++.-.+.++
T Consensus       210 DiWslGCllyEM  221 (375)
T KOG0591|consen  210 DIWSLGCLLYEM  221 (375)
T ss_pred             hHHHHHHHHHHH
Confidence            999999877655

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.53  E-value=3.7e-14  Score=153.40  Aligned_cols=184  Identities=13%  Similarity=0.083  Sum_probs=120.0

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||+|++|+||+|..  +|+.||+|+.++.....                            .           .....+
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~----------------------------~-----------~~~~~~   42 (325)
T cd05594           2 LLGKGTFGKVILVKEKATGRYYAMKILKKEVIVA----------------------------K-----------DEVAHT   42 (325)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh----------------------------h-----------hHHHHH
Confidence            589999999999998  68999999884321000                            0           001123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh-CC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS-HG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~-~G  454 (766)
                      ..|.+.+..+     .++++.....+.......+|||||++|++|.+.... ...++...+...+.  ...+..+|. .|
T Consensus        43 ~~e~~~l~~~-----~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~~lH~~~~  116 (325)
T cd05594          43 LTENRVLQNS-----RHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSR-ERVFSEDRARFYGAEIVSALDYLHSEKN  116 (325)
T ss_pred             HHHHHHHHhC-----CCCCCCceEEEEEcCCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3444444333     233333222233445667999999999999775432 22344444333332  234778886 79


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  ++.++|+|||++.........      .....+...++++++...+......|++++...+.+
T Consensus       117 ivHrDikp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  188 (325)
T cd05594         117 VVYRDLKLENLMLDK--DGHIKITDFGLCKEGIKDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE  188 (325)
T ss_pred             EEecCCCCCeEEECC--CCCEEEecCCCCeecCCCCcc------cccccCCcccCCHHHHccCCCCCccccccccceeee
Confidence            999999999999986  889999999998754322111      011246778899999877777788999998876655


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       189 l~  190 (325)
T cd05594         189 MM  190 (325)
T ss_pred             ec
Confidence            54

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.53  E-value=5.3e-14  Score=158.00  Aligned_cols=189  Identities=20%  Similarity=0.244  Sum_probs=141.2

Q ss_pred             ChhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004234          288 PLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (766)
Q Consensus       288 ~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (766)
                      ++...|..|.  -||.|+-|-||.|.-  +++.||||..  ++..+                   ++             
T Consensus       270 dP~~~y~~~~--kigqgaSG~vy~A~~~~~~~~VaiK~m--~l~~Q-------------------~~-------------  313 (550)
T KOG0578|consen  270 DPRSKYTDFK--KIGQGATGGVYVARKISTKQEVAIKRM--DLRKQ-------------------PK-------------  313 (550)
T ss_pred             Chhhhhcchh--hhccccccceeeeeeccCCceEEEEEE--EeccC-------------------Cc-------------
Confidence            3444444444  599999999999998  6899999976  11111                   00             


Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH
Q 004234          366 ECASVLYQEIDYTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV  443 (766)
Q Consensus       366 E~~~~l~~ElDf~~EA~--Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv  443 (766)
                        ++.+..|+..+++.+  |+..|.+.|-             +.++.|.||||++|+.|.|+...  ...+..+||...-
T Consensus       314 --keLilnEi~Vm~~~~H~NiVnfl~Syl-------------v~deLWVVMEym~ggsLTDvVt~--~~~~E~qIA~Icr  376 (550)
T KOG0578|consen  314 --KELLLNEILVMRDLHHPNIVNFLDSYL-------------VGDELWVVMEYMEGGSLTDVVTK--TRMTEGQIAAICR  376 (550)
T ss_pred             --hhhhHHHHHHHHhccchHHHHHHHHhc-------------ccceeEEEEeecCCCchhhhhhc--ccccHHHHHHHHH
Confidence              123445666666553  7777766543             23678999999999999998543  3356666666544


Q ss_pred             H--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004234          444 E--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP  521 (766)
Q Consensus       444 ~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~  521 (766)
                      +  ..|+.+|..|++|+|+|..|||+..  +|.++|.|||++.+++++...      .+.+-+.+.+|+++........+
T Consensus       377 e~l~aL~fLH~~gIiHrDIKSDnILL~~--~g~vKltDFGFcaqi~~~~~K------R~TmVGTPYWMAPEVvtrk~YG~  448 (550)
T KOG0578|consen  377 EILQGLKFLHARGIIHRDIKSDNILLTM--DGSVKLTDFGFCAQISEEQSK------RSTMVGTPYWMAPEVVTRKPYGP  448 (550)
T ss_pred             HHHHHHHHHHhcceeeeccccceeEecc--CCcEEEeeeeeeeccccccCc------cccccCCCCccchhhhhhcccCc
Confidence            3  3488899999999999999999986  899999999999999987631      23456799999999999877788


Q ss_pred             CCCHHHHHHHHHHHHH
Q 004234          522 TGDTTAVRRTAQFFLN  537 (766)
Q Consensus       522 ~~D~~~l~~~i~~~l~  537 (766)
                      ..|+++|.-.+-++++
T Consensus       449 KVDIWSLGIMaIEMve  464 (550)
T KOG0578|consen  449 KVDIWSLGIMAIEMVE  464 (550)
T ss_pred             cccchhhhhHHHHHhc
Confidence            9999999977666554

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.53  E-value=5.6e-14  Score=151.56  Aligned_cols=185  Identities=18%  Similarity=0.151  Sum_probs=115.8

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||.|++|+||+|+.  +|+.||||+........                                 .      ..+.++
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~------~~~~~~   42 (321)
T cd05603           2 VIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILK---------------------------------K------KEQNHI   42 (321)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHH---------------------------------h------hHHHHH
Confidence            589999999999999  58999999873211000                                 0      001112


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~Gf  455 (766)
                      ..|...   +...+.+ +++.-..-+.+.....++||||++|++|.+.... ...+....+...+  +-..+..+|..|+
T Consensus        43 ~~e~~~---~l~~~~h-~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~i  117 (321)
T cd05603          43 MAERNV---LLKNLKH-PFLVGLHYSFQTAEKLYFVLDYVNGGELFFHLQR-ERCFLEPRARFYAAEVASAIGYLHSLNI  117 (321)
T ss_pred             HHHHHH---HHHhCCC-CCccceeeEEEcCCEEEEEEcCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            222211   1112222 3222111112334567999999999999765432 1223333332222  2234788899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|+||.||+++.  +|.++|+|||++.........      .....+.+.++++++......+...|++++...+.++
T Consensus       118 vH~Dlkp~NIll~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el  189 (321)
T cd05603         118 IYRDLKPENILLDS--QGHVVLTDFGLCKEGVEPEET------TSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEM  189 (321)
T ss_pred             EeccCCHHHeEECC--CCCEEEccCCCCccCCCCCCc------cccccCCcccCCHHHhcCCCCCCcCcccccchhhhhh
Confidence            99999999999986  899999999998753221110      0112356778889888766677789999998877666


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       190 ~  190 (321)
T cd05603         190 L  190 (321)
T ss_pred             h
Confidence            5

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.53  E-value=8.5e-14  Score=149.71  Aligned_cols=184  Identities=15%  Similarity=0.124  Sum_probs=120.0

Q ss_pred             ccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       301 IgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      ||.|++|.||+|+.  +|+.||||+.++....                                  ..     .....+.
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~----------------------------------~~-----~~~~~~~   41 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIV----------------------------------SR-----SEVTHTL   41 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhh----------------------------------hh-----hHHHHHH
Confidence            68999999999998  5899999987421000                                  00     0011233


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCcc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFF  456 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~~Gff  456 (766)
                      .|...+.++     +++++.-...+.......++||||++|++|.+.... ...++...+...+.  -..+..+|..|++
T Consensus        42 ~E~~~l~~l-----~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~  115 (312)
T cd05585          42 AERTVLAQV-----NCPFIVPLKFSFQSPEKLYLVLAFINGGELFHHLQR-EGRFDLSRARFYTAELLCALENLHKFNVI  115 (312)
T ss_pred             HHHHHHHhC-----CCCcEeceeeEEecCCeEEEEEcCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCeE
Confidence            455444443     223332221222334667999999999999876532 22234433333322  2347889999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      |+|+||.||+++.  ++.++++|||++.........      .....+.+.++++++......+...|++++...+.+++
T Consensus       116 HrDlkp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~  187 (312)
T cd05585         116 YRDLKPENILLDY--QGHIALCDFGLCKLNMKDDDK------TNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEML  187 (312)
T ss_pred             eCCCCHHHeEECC--CCcEEEEECcccccCccCCCc------cccccCCcccCCHHHHcCCCCCCccceechhHHHHHHH
Confidence            9999999999985  889999999998764332211      11123577788898887666777889999998777665


Q ss_pred             H
Q 004234          537 N  537 (766)
Q Consensus       537 ~  537 (766)
                      .
T Consensus       188 t  188 (312)
T cd05585         188 T  188 (312)
T ss_pred             h
Confidence            3

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.52  E-value=2e-14  Score=162.15  Aligned_cols=194  Identities=17%  Similarity=0.141  Sum_probs=126.9

Q ss_pred             hhhhhhccCc-ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004234          289 LDDVFERFDV-EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (766)
Q Consensus       289 ~eeiF~~fd~-~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (766)
                      |+..++++.. ++||+|+||.||||.|.|. ||||+..-.-                                  .-++.
T Consensus       387 WeIp~~ev~l~~rIGsGsFGtV~Rg~whGd-VAVK~Lnv~~----------------------------------pt~~q  431 (678)
T KOG0193|consen  387 WEIPPEEVLLGERIGSGSFGTVYRGRWHGD-VAVKLLNVDD----------------------------------PTPEQ  431 (678)
T ss_pred             cccCHHHhhccceeccccccceeecccccc-eEEEEEecCC----------------------------------CCHHH
Confidence            3444444433 7899999999999999874 9999873211                                  11121


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC--CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--H
Q 004234          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--V  443 (766)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s--t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v  443 (766)
                      .+      .|.+|..|+++-++.       .|- .+..++  ....+|+.||+|-+|..........++..++...+  +
T Consensus       432 lq------aFKnEVa~lkkTRH~-------NIl-LFMG~~~~p~~AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQi  497 (678)
T KOG0193|consen  432 LQ------AFKNEVAVLKKTRHE-------NIL-LFMGACMNPPLAIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQI  497 (678)
T ss_pred             HH------HHHHHHHHHhhcchh-------hhe-eeehhhcCCceeeeehhccCchhhhhccchhhhhhHHHHHHHHHHH
Confidence            11      355666655554321       111 122222  23478999999999998766555555554443333  3


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC---C
Q 004234          444 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL---V  520 (766)
Q Consensus       444 ~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~---~  520 (766)
                      ...+.++|..+|+|+|+|..||++.+  +++++|.|||+++.-+.-...    .=+..-.+..-+|+++++.|+-.   +
T Consensus       498 aqGM~YLHAK~IIHrDLKSnNIFl~~--~~kVkIgDFGLatvk~~w~g~----~q~~qp~gsilwmAPEvIRmqd~nPfS  571 (678)
T KOG0193|consen  498 AQGMDYLHAKNIIHRDLKSNNIFLHE--DLKVKIGDFGLATVKTRWSGE----QQLEQPHGSLLWMAPEVIRMQDDNPFS  571 (678)
T ss_pred             HHhhhhhhhhhhhhhhccccceEEcc--CCcEEEecccceeeeeeeccc----cccCCCccchhhhcHHHHhhcccCCCC
Confidence            33477899999999999999999985  799999999998753221111    11122345677899999998754   3


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~l~  537 (766)
                      +..|+|+|.-.+++++.
T Consensus       572 ~qSDVYaFGiV~YELlt  588 (678)
T KOG0193|consen  572 FQSDVYAFGIVWYELLT  588 (678)
T ss_pred             cccchhhhhHHHHHHHh
Confidence            45799999988877764

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=2.4e-14  Score=158.74  Aligned_cols=194  Identities=20%  Similarity=0.256  Sum_probs=125.3

Q ss_pred             hhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004234          290 DDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (766)
Q Consensus       290 eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (766)
                      .+.|+.++  -||.|.|||||+|+.  +|+.||+|-.|=+..+                                  +++
T Consensus       116 ~~~feki~--kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~----------------------------------~~~  159 (560)
T KOG0600|consen  116 ADSFEKIE--KIGEGTYGQVYKARDLETGKIVALKKVRFDNEK----------------------------------EGF  159 (560)
T ss_pred             hHHHHHHH--HhcCcchhheeEeeecccCcEEEEEEeecccCC----------------------------------Ccc
Confidence            34455544  599999999999998  6999999976432211                                  112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee-ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--
Q 004234          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--  444 (766)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~-e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--  444 (766)
                      -..+.+|+-      -++++    .+..-|..-.++. .+++..|||.|||+- .|.-+.......++..++-..+-+  
T Consensus       160 ~~t~~REI~------ILr~l----~HpNIikL~eivt~~~~~siYlVFeYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl  228 (560)
T KOG0600|consen  160 PITAIREIK------ILRRL----DHPNIIKLEEIVTSKLSGSIYLVFEYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLL  228 (560)
T ss_pred             hHHHHHHHH------HHHhc----CCCcccceeeEEEecCCceEEEEEecccc-hhhhhhcCCCcccChHHHHHHHHHHH
Confidence            222233322      22222    1212223333333 347788999999984 344333333333444444333322  


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004234          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (766)
Q Consensus       445 ~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D  524 (766)
                      ..+.++|..||+|||+|..|||++.  +|.++|.|||+++.+++.....|..-++.+..+-++.+    +..--..+..|
T Consensus       229 ~Gl~~cH~~gvlHRDIK~SNiLidn--~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELL----LG~t~Yg~aVD  302 (560)
T KOG0600|consen  229 EGLEYCHSRGVLHRDIKGSNILIDN--NGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELL----LGATSYGTAVD  302 (560)
T ss_pred             HHHHHHhhcCeeeccccccceEEcC--CCCEEeccccceeeccCCCCcccccceEEeeccChHHh----cCCccccccee
Confidence            2367788999999999999999985  99999999999999999888888777777666666544    22223456779


Q ss_pred             HHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFL  536 (766)
Q Consensus       525 ~~~l~~~i~~~l  536 (766)
                      +++..-.+.+++
T Consensus       303 lWS~GCIl~El~  314 (560)
T KOG0600|consen  303 LWSVGCILAELF  314 (560)
T ss_pred             ehhhhHHHHHHH
Confidence            998887665554

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.52  E-value=1.1e-13  Score=149.31  Aligned_cols=184  Identities=19%  Similarity=0.158  Sum_probs=119.1

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||.|++|.||+|+.  +|+.||||+.++.....                                 ++-.      -.+
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~---------------------------------~~~~------~~~   42 (316)
T cd05620           2 VLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLI---------------------------------DDDV------ECT   42 (316)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------cchH------HHH
Confidence            589999999999999  58999999885421100                                 0000      011


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH  453 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~~  453 (766)
                      ..|.+.+..   .. +++++  ++.+.  ...+..+|||||++|++|.+.... ....+.......+.  -..+..+|..
T Consensus        43 ~~e~~~l~~---~~-~~~~i--~~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~-~~~~~~~~~~~~~~qi~~~l~~lH~~  115 (316)
T cd05620          43 MVEKRVLAL---AW-ENPFL--THLYCTFQTKEHLFFVMEFLNGGDLMFHIQD-KGRFDLYRATFYAAEIVCGLQFLHSK  115 (316)
T ss_pred             HHHHHHHHh---cc-CCCCc--cCeeEEEEeCCEEEEEECCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            223222221   11 22332  33332  334567999999999999875432 22344443333322  2347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||+||+++.  ++.++|+|||++.........      .....++..++++++...+..++..|++++...+.
T Consensus       116 ~ivHrDlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~  187 (316)
T cd05620         116 GIIYRDLKLDNVMLDR--DGHIKIADFGMCKENVFGDNR------ASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLY  187 (316)
T ss_pred             CeEecCCCHHHeEECC--CCCEEeCccCCCeecccCCCc------eeccCCCcCccCHHHHcCCCCCcccchhhhHHHHH
Confidence            9999999999999985  889999999998753211110      01124677889999988777788899999998877


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       188 el~~  191 (316)
T cd05620         188 EMLI  191 (316)
T ss_pred             HHHh
Confidence            7653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.52  E-value=1.4e-13  Score=150.61  Aligned_cols=183  Identities=14%  Similarity=0.054  Sum_probs=121.6

Q ss_pred             ccccccceeEEEEEee--c-CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--K-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~-G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      +.||+|++|.||+|++  + +..||||+.......                                 ..+      ..-
T Consensus        36 ~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~---------------------------------~~~------~~~   76 (340)
T PTZ00426         36 RTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKII---------------------------------KQK------QVD   76 (340)
T ss_pred             EEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhh---------------------------------hhh------hHH
Confidence            7899999999999987  2 368999976311000                                 000      001


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~  453 (766)
                      .+.+|.+.+..+.     ++++.-..-+.......++||||++|++|.++.... ..++...+....  +...+..+|..
T Consensus        77 ~~~~E~~~l~~l~-----hp~Iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~~-~~~~~~~~~~~~~qi~~aL~~LH~~  150 (340)
T PTZ00426         77 HVFSERKILNYIN-----HPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRRN-KRFPNDVGCFYAAQIVLIFEYLQSL  150 (340)
T ss_pred             HHHHHHHHHHhCC-----CCCCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            2345555444432     233322222223345679999999999998865322 223333322222  22347888999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||+||+++.  +|.++|+|||++..++....         ...+++.++++++......+...|++++...+.
T Consensus       151 ~ivHrDLkp~NILl~~--~~~ikL~DFG~a~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~  219 (340)
T PTZ00426        151 NIVYRDLKPENLLLDK--DGFIKMTDFGFAKVVDTRTY---------TLCGTPEYIAPEILLNVGHGKAADWWTLGIFIY  219 (340)
T ss_pred             CeEccCCCHHHEEECC--CCCEEEecCCCCeecCCCcc---------eecCChhhcCHHHHhCCCCCccccccchhhHHH
Confidence            9999999999999985  89999999999988764321         124678899999987766777889999998777


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       220 ell~  223 (340)
T PTZ00426        220 EILV  223 (340)
T ss_pred             HHhc
Confidence            6653

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.52  E-value=8.5e-14  Score=148.47  Aligned_cols=197  Identities=17%  Similarity=0.181  Sum_probs=125.8

Q ss_pred             HHhCCChhhhhhccCc-------ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCC
Q 004234          283 EELGAPLDDVFERFDV-------EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKS  353 (766)
Q Consensus       283 ~elG~~~eeiF~~fd~-------~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~  353 (766)
                      +|++.+.+-++...+.       ..||.|++|+||+|..  +|+.||||..+-...                        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~------------------------   58 (292)
T cd06657           3 EQFRAALQMVVDPGDPRTYLDNFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQ------------------------   58 (292)
T ss_pred             hHhhhhceEeecCCChHHHhhhHHHcCCCCCeEEEEEEEcCCCeEEEEEEecccch------------------------
Confidence            4455444444433333       4699999999999998  699999997521110                        


Q ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCC
Q 004234          354 DGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV  433 (766)
Q Consensus       354 ~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~  433 (766)
                                        ..+-.+.+|...+..+    .+..-+.....+ ......+++|||++|.++.++...  ...
T Consensus        59 ------------------~~~~~~~~e~~~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~--~~~  113 (292)
T cd06657          59 ------------------QRRELLFNEVVIMRDY----QHENVVEMYNSY-LVGDELWVVMEFLEGGALTDIVTH--TRM  113 (292)
T ss_pred             ------------------hHHHHHHHHHHHHHhc----CCcchhheeeEE-EeCCEEEEEEecCCCCcHHHHHhc--CCC
Confidence                              0112244444434333    121112222222 234567999999999999886432  223


Q ss_pred             CHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHH
Q 004234          434 DRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ  511 (766)
Q Consensus       434 d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~  511 (766)
                      +...+...+.+  ..+..+|..|++|+|++|.||+++.  ++.++++|||++..+.......      ....++..++++
T Consensus       114 ~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~~p  185 (292)
T cd06657         114 NEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTH--DGRVKLSDFGFCAQVSKEVPRR------KSLVGTPYWMAP  185 (292)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECC--CCCEEEcccccceecccccccc------cccccCccccCH
Confidence            44443333322  3478899999999999999999985  7899999999988775433211      112345567788


Q ss_pred             HHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          512 AMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       512 ~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +....+..++..|++++...+.+++
T Consensus       186 E~~~~~~~~~~~Dv~slGvil~el~  210 (292)
T cd06657         186 ELISRLPYGPEVDIWSLGIMVIEMV  210 (292)
T ss_pred             HHhcCCCCCchhhHHHHHHHHHHHH
Confidence            8776666677889999987766654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.52  E-value=8.2e-14  Score=151.37  Aligned_cols=188  Identities=15%  Similarity=0.151  Sum_probs=120.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+....-                                  ....     .....
T Consensus         7 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~----------------------------------~~~~-----~~~~~   47 (331)
T cd05624           7 KVIGRGAFGEVAVVKMKHTERIYAMKILNKWE----------------------------------MLKR-----AETAC   47 (331)
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEeHHH----------------------------------HHhh-----HHHHH
Confidence            5799999999999998  58999999873210                                  0000     00111


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +..|...+...     +++++....-+.+.....+|||||++|++|.++.......++...+...+  +-..++.+|..|
T Consensus        48 ~~~e~~~l~~~-----~~~~i~~l~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~  122 (331)
T cd05624          48 FREERNVLVNG-----DCQWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLH  122 (331)
T ss_pred             HHHHHHHHHhC-----CCCCEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22333222221     22333222222233456799999999999998754322233433332222  223478889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCCHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTTAVR  529 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-----G~~~~~~D~~~l~  529 (766)
                      ++|+|+||+||+++.  ++.++|+|||++..+.......     .....+...++++++...     +......|++++.
T Consensus       123 iiHrDlkp~Nill~~--~~~~kl~DfG~a~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlG  195 (331)
T cd05624         123 YVHRDIKPDNVLLDM--NGHIRLADFGSCLKMNQDGTVQ-----SSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLG  195 (331)
T ss_pred             eeeccCchHHEEEcC--CCCEEEEeccceeeccCCCcee-----eccccCCcccCCHHHHhccccCCCCCCCcccEEeee
Confidence            999999999999985  8899999999998775432211     112346778888888764     4456778999998


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       196 vil~ell~  203 (331)
T cd05624         196 VCMYEMLY  203 (331)
T ss_pred             hhhhhhhh
Confidence            87776653

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.52  E-value=1e-13  Score=150.70  Aligned_cols=186  Identities=15%  Similarity=0.101  Sum_probs=119.8

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||+|++|+||+|+.  +|+.||+|+.+......                                 .+...      .+
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~------~~   42 (329)
T cd05618           2 VIGRGSYAKVLLVRLKKTERIYAMKVVKKELVND---------------------------------DEDID------WV   42 (329)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcc---------------------------------hhHHH------HH
Confidence            689999999999998  58999999884321110                                 00000      12


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~Gf  455 (766)
                      ..|...+.+    ..+++++.-..-+....+..++||||++|++|.+.... ...++...+...+  +...+..+|..|+
T Consensus        43 ~~E~~~l~~----~~~hp~iv~~~~~~~~~~~~~lv~E~~~~~~L~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~i  117 (329)
T cd05618          43 QTEKHVFEQ----ASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR-QRKLPEEHARFYSAEISLALNYLHERGI  117 (329)
T ss_pred             HHHHHHHHh----cCCCCcCCceeeEEEeCCEEEEEEeCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            222222221    11233332222222345678999999999999775432 2234443333332  2234788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|+||.||+++.  ++.++|+|||++.........      .....+++.++++++...+......|++++...+.++
T Consensus       118 vH~Dikp~Nili~~--~~~~kL~DfG~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el  189 (329)
T cd05618         118 IYRDLKLDNVLLDS--EGHIKLTDYGMCKEGLRPGDT------TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEM  189 (329)
T ss_pred             eeCCCCHHHEEECC--CCCEEEeeCCccccccCCCCc------cccccCCccccCHHHHcCCCCCCccceecccHHHHHH
Confidence            99999999999986  889999999998754221110      0112457788899988877777789999999887766


Q ss_pred             HH
Q 004234          536 LN  537 (766)
Q Consensus       536 l~  537 (766)
                      +.
T Consensus       190 ~~  191 (329)
T cd05618         190 MA  191 (329)
T ss_pred             hh
Confidence            54

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.52  E-value=4.6e-14  Score=155.73  Aligned_cols=191  Identities=18%  Similarity=0.189  Sum_probs=118.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||.|++|.||+|+.  +|+.||||+.+..       +.         .                 ..+...      .
T Consensus         7 ~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~-------~~---------~-----------------~~~~~~------~   47 (376)
T cd05598           7 KTIGIGAFGEVCLVRKVDTNALYAMKTLRKA-------DV---------L-----------------MRNQAA------H   47 (376)
T ss_pred             EEEEeCCCeEEEEEEECCCCCEEEEEEEcHH-------HH---------H-----------------hhhhHH------H
Confidence            6899999999999998  5899999987321       00         0                 000111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +.+|...+.++     ++++|.-...........++||||++|++|.++.... ..++...+...+  +-..+..+|..|
T Consensus        48 ~~~E~~il~~l-----~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~-~~~~~~~~~~~~~qi~~al~~lH~~~  121 (376)
T cd05598          48 VKAERDILAEA-----DNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRL-GIFEEDLARFYIAELTCAIESVHKMG  121 (376)
T ss_pred             HHHHHHHHHhC-----CCCCcceEEEEEEcCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            23344333332     2233322222223356679999999999999875321 122332222222  223478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhh----------------------------------HHHHHH---H
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNI----------------------------------REGLLE---A  497 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~----------------------------------r~~l~~---l  497 (766)
                      ++|+|+||+||+++.  ++.++|+|||++..+....                                  +.....   .
T Consensus       122 ivHrDlkp~Nill~~--~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (376)
T cd05598         122 FIHRDIKPDNILIDR--DGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRC  199 (376)
T ss_pred             eEeCCCCHHHEEECC--CCCEEEEeCCCCccccccccccccccccccccccccccccccccccccccchhhhhhhhcccc
Confidence            999999999999985  8899999999975331000                                  000000   0


Q ss_pred             HHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          498 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       498 ~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ......+.+.++++++..-...+...|++++...+.+++
T Consensus       200 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell  238 (376)
T cd05598         200 LAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML  238 (376)
T ss_pred             cccccCCCccccCHHHHcCCCCCcceeeeeccceeeehh
Confidence            001124677889999887666777889999987776654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.52  E-value=3.6e-14  Score=154.13  Aligned_cols=191  Identities=17%  Similarity=0.135  Sum_probs=123.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|+.  +|+.||||+.+......                                 .+.      .-.
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~------~~~   47 (350)
T cd05573           7 KVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIK---------------------------------RNQ------IAH   47 (350)
T ss_pred             EEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhh---------------------------------ccH------HHH
Confidence            5799999999999999  59999999874211000                                 000      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +..|...+..+.     ++++.-...+.......++||||++|++|.++.... ..++...+...+  +-..+..+|..|
T Consensus        48 ~~~e~~~l~~~~-----~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH~~g  121 (350)
T cd05573          48 VRAERDILADAD-----SPWIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRK-DVFPEETARFYIAELVLALDSVHKLG  121 (350)
T ss_pred             HHHHHHHHHhcC-----CCCccchhhheecCCeEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            333333333321     222211111122345679999999999998865422 234443333332  223478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHH-----------------------HHHHHHHhhcCHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL-----------------------LEAFYGIYEKDADKVLQ  511 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l-----------------------~~l~~a~~~~D~~~v~~  511 (766)
                      ++|+|+||.||+++.  ++.++|+|||++..+........                       .........+++.++++
T Consensus       122 iiH~Dlkp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  199 (350)
T cd05573         122 FIHRDIKPDNILIDA--DGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAP  199 (350)
T ss_pred             eeccCCCHHHeEECC--CCCEEeecCCCCccCcccCcccccccccccccccccccccccccccccccccccccCccccCH
Confidence            999999999999986  89999999999987765430000                       00011123467888999


Q ss_pred             HHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          512 AMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       512 ~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ++...+..++..|++++...+.+++
T Consensus       200 E~~~~~~~~~~~DiwSlG~il~ell  224 (350)
T cd05573         200 EVLRGTPYGLECDWWSLGVILYEML  224 (350)
T ss_pred             HHHcCCCCCCceeeEecchhhhhhc
Confidence            9988777788899999998776665

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.51  E-value=1.5e-13  Score=149.07  Aligned_cols=183  Identities=15%  Similarity=0.118  Sum_probs=119.2

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||.|++|.||+|+.  +|+.||||+.++.....                                 .+...      .+
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~---------------------------------~~~~~------~~   42 (329)
T cd05588           2 VIGRGSYAKVLLVELKKTRRIYAMKVIKKELVND---------------------------------DEDID------WV   42 (329)
T ss_pred             eEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHH------HH
Confidence            589999999999998  58999999985321100                                 00000      12


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      ..|...+..    ..++++|  +.++.  +..+..+|+|||++|++|.+.... ...++...+...+.+  ..+..+|..
T Consensus        43 ~~e~~il~~----~~~hp~I--v~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~-~~~l~~~~~~~~~~qi~~~l~~lH~~  115 (329)
T cd05588          43 QTEKHVFET----ASNHPFL--VGLHSCFQTESRLFFVIEFVSGGDLMFHMQR-QRKLPEEHARFYSAEISLALNFLHER  115 (329)
T ss_pred             HHHHHHHHh----ccCCCCC--CceEEEEEcCCEEEEEEeCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            223322222    2233333  22232  334567999999999999775432 223444443333322  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceecc-ChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI-SPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L-~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      |++|+|+||.||+++.  ++.++|+|||++... .....       .....++..++++++...+..+...|++++...+
T Consensus       116 ~ivH~dlkp~Nili~~--~~~~kL~Dfg~~~~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l  186 (329)
T cd05588         116 GIIYRDLKLDNVLLDA--EGHIKLTDYGMCKEGIRPGDT-------TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLM  186 (329)
T ss_pred             CeEecCCCHHHeEECC--CCCEEECcCccccccccCCCc-------cccccCCccccCHHHHcCCCCCCccceechHHHH
Confidence            9999999999999986  889999999998753 21111       0112457788899988877777789999999887


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       187 ~el~~  191 (329)
T cd05588         187 FEMMA  191 (329)
T ss_pred             HHHHH
Confidence            77653

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.51  E-value=1.5e-13  Score=148.52  Aligned_cols=185  Identities=17%  Similarity=0.098  Sum_probs=119.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+++....   +                             ++       .-.
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~---~-----------------------------~~-------~~~   46 (324)
T cd05587           6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQ---D-----------------------------DD-------VEC   46 (324)
T ss_pred             EEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhh---h-----------------------------hH-------HHH
Confidence            5799999999999998  47899999875421100   0                             00       002


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~  452 (766)
                      +..|.+.+..+.    +.+.  ++..+.  ......++||||++|++|.+.... ...+........+.  -..+..+|.
T Consensus        47 ~~~e~~~l~~~~----~~~~--i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH~  119 (324)
T cd05587          47 TMVEKRVLALPG----KPPF--LTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQ-VGKFKEPHAVFYAAEIAIGLFFLHS  119 (324)
T ss_pred             HHHHHHHHHhcC----CCCc--eeeeEEEEEcCCEEEEEEcCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            233444433321    2222  233322  234567999999999999875432 12233333333322  234788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      .|++|+|+||.||+++.  ++.++|+|||++.........      .....++..++++++...+..+...|++++...+
T Consensus       120 ~~ivH~dlkp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil  191 (324)
T cd05587         120 KGIIYRDLKLDNVMLDA--EGHIKIADFGMCKENIFGGKT------TRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLL  191 (324)
T ss_pred             CCeEecCCCHHHeEEcC--CCCEEEeecCcceecCCCCCc------eeeecCCccccChhhhcCCCCCcccchhhhHHHH
Confidence            99999999999999986  889999999998653211110      0112356788889988777777788999999877


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       192 ~ellt  196 (324)
T cd05587         192 YEMLA  196 (324)
T ss_pred             HHHHh
Confidence            76653

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.51  E-value=1.5e-13  Score=149.08  Aligned_cols=184  Identities=17%  Similarity=0.116  Sum_probs=119.4

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||.|++|+||+|..  +|+.||||+.+......                                 .+...      .+
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~------~~   42 (327)
T cd05617           2 VIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHD---------------------------------DEDID------WV   42 (327)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHH------HH
Confidence            589999999999998  58999999984321100                                 00001      12


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      ..|...+.++    .+++.+  +.++.  +..+..+|||||++|++|.+.... ...++...+...+.+  ..+..+|..
T Consensus        43 ~~e~~~~~~~----~~~~~i--~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~-~~~l~~~~~~~~~~qi~~al~~lH~~  115 (327)
T cd05617          43 QTEKHVFEQA----SSNPFL--VGLHSCFQTTSRLFLVIEYVNGGDLMFHMQR-QRKLPEEHARFYAAEICIALNFLHER  115 (327)
T ss_pred             HHHHHHHHhh----cCCCCE--eeEEEEEEeCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            2333333222    223332  33332  334567999999999999875432 122444333333222  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||.||+++.  ++.++|+|||++.........      .....+.+.++++++...+..+...|++++...+.
T Consensus       116 ~ivHrDlkp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~  187 (327)
T cd05617         116 GIIYRDLKLDNVLLDA--DGHIKLTDYGMCKEGLGPGDT------TSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMF  187 (327)
T ss_pred             CeeccCCCHHHEEEeC--CCCEEEeccccceeccCCCCc------eecccCCcccCCHHHHCCCCCCchheeehhHHHHH
Confidence            9999999999999986  889999999998753221111      01123577888899887777777899999998877


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       188 ell~  191 (327)
T cd05617         188 EMMA  191 (327)
T ss_pred             HHHh
Confidence            6653

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.51  E-value=1.3e-13  Score=149.15  Aligned_cols=185  Identities=15%  Similarity=0.123  Sum_probs=119.4

Q ss_pred             ccccccceeEEEEEee-----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|++|.||+|+.     .|+.||||+.+.....                                      .....
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~--------------------------------------~~~~~   43 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIV--------------------------------------RNQKD   43 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHH--------------------------------------hhhhh
Confidence            4699999999999986     3789999987421000                                      00001


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccc-cceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVK-VPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~-vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI  450 (766)
                      ...+..|...+..+.     +++|. +-..+ ......+++|||++|++|.+..... ..+....+...+  +-..+..+
T Consensus        44 ~~~~~~E~~il~~l~-----hp~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~l~~l  116 (323)
T cd05584          44 TAHTKAERNILEAVK-----HPFIVDLIYAF-QTGGKLYLILEYLSGGELFMHLERE-GIFMEDTACFYLSEISLALEHL  116 (323)
T ss_pred             HHHHHHHHHHHHhCC-----CCchhceeeEE-ecCCeEEEEEeCCCCchHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHH
Confidence            123445555555442     23332 22222 3345679999999999998764321 122332222222  22347889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|+||.||+++.  +|.++|+|||++.........      .....+...++++++..........|++++..
T Consensus       117 H~~~ivH~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  188 (323)
T cd05584         117 HQQGIIYRDLKPENILLDA--QGHVKLTDFGLCKESIHEGTV------THTFCGTIEYMAPEILMRSGHGKAVDWWSLGA  188 (323)
T ss_pred             HHCCeecCCCCHHHeEECC--CCCEEEeeCcCCeecccCCCc------ccccCCCccccChhhccCCCCCCcceecccHH
Confidence            9999999999999999985  899999999998754322111      11123567788888887666677889999988


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       189 il~ell  194 (323)
T cd05584         189 LMYDML  194 (323)
T ss_pred             HHHHHh
Confidence            776665

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.51  E-value=1.4e-13  Score=148.88  Aligned_cols=189  Identities=15%  Similarity=0.137  Sum_probs=120.2

Q ss_pred             ccccccceeEEEEEee-----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|++|.||+|+.     +|+.||+|+.+......                .                ..      .
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~----------------~----------------~~------~   47 (332)
T cd05614           6 KVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQ----------------K----------------AK------T   47 (332)
T ss_pred             EEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhh----------------h----------------hh------H
Confidence            5799999999999986     47899999874211000                0                00      0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~  451 (766)
                      .-.+..|...+..+    .+++++....-+.+.....+++|||++|++|.+.... ...++...+...+  +-..+..+|
T Consensus        48 ~~~~~~e~~~l~~l----~~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~lH  122 (332)
T cd05614          48 VEHTRTERNVLEHV----RQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQ-RDNFSEDEVRFYSGEIILALEHLH  122 (332)
T ss_pred             HHHHHHHHHHHHhc----cCCCCcccEEEEEecCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            01223344433333    2334333322233344567899999999999876432 2234444443333  223478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRR  530 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~  530 (766)
                      ..|++|+|+||.||+++.  ++.++|+|||++..+........     ....+...++++++.... ..+...|++++..
T Consensus       123 ~~~ivHrDlkp~Nili~~--~~~~kl~DfG~~~~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~  195 (332)
T cd05614         123 KLGIVYRDIKLENILLDS--EGHVVLTDFGLSKEFLSEEKERT-----YSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGI  195 (332)
T ss_pred             HCCcEecCCCHHHeEECC--CCCEEEeeCcCCccccccCCCcc-----ccccCCccccCHHHhcCCCCCCCccccccchh
Confidence            999999999999999986  88999999999886543221111     012467788889887632 2456789999998


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       196 il~ellt  202 (332)
T cd05614         196 LIFELLT  202 (332)
T ss_pred             hhhhhhc
Confidence            7776653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.50  E-value=1e-13  Score=151.73  Aligned_cols=181  Identities=14%  Similarity=0.115  Sum_probs=115.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+......+.                                   ..      -+
T Consensus        80 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~------~~  118 (353)
T PLN00034         80 NRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDT-----------------------------------VR------RQ  118 (353)
T ss_pred             hhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHH-----------------------------------HH------HH
Confidence            6799999999999998  58999999874332111                                   11      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCcc
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFF  456 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~Gff  456 (766)
                      +.+|++.+..+.     +++|.-..-+.+..+..+++|||++|++|.+......  .....++..++ ..+..+|..|++
T Consensus       119 ~~~E~~~l~~l~-----h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~i~~qi~-~aL~~LH~~~iv  190 (353)
T PLN00034        119 ICREIEILRDVN-----HPNVVKCHDMFDHNGEIQVLLEFMDGGSLEGTHIADE--QFLADVARQIL-SGIAYLHRRHIV  190 (353)
T ss_pred             HHHHHHHHHhCC-----CCCcceeeeEeccCCeEEEEEecCCCCcccccccCCH--HHHHHHHHHHH-HHHHHHHHCCEe
Confidence            344555444432     2332222222344566799999999998875321110  01112333333 347789999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-----CCCCCCHHHHHHH
Q 004234          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-----LVPTGDTTAVRRT  531 (766)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~-----~~~~~D~~~l~~~  531 (766)
                      |+|+||.||+++.  ++.++|+|||++..+.......      ....++..++++++.....     .....|+++|...
T Consensus       191 HrDlkp~NIll~~--~~~~kL~DfG~~~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvi  262 (353)
T PLN00034        191 HRDIKPSNLLINS--AKNVKIADFGVSRILAQTMDPC------NSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVS  262 (353)
T ss_pred             ecCCCHHHEEEcC--CCCEEEcccccceecccccccc------cccccCccccCccccccccccCcCCCcchhHHHHHHH
Confidence            9999999999986  8899999999988765432110      1123566778888764321     2236799999987


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       263 l~el~  267 (353)
T PLN00034        263 ILEFY  267 (353)
T ss_pred             HHHHH
Confidence            76654

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.50  E-value=1.8e-13  Score=138.37  Aligned_cols=176  Identities=25%  Similarity=0.341  Sum_probs=113.2

Q ss_pred             EEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCC--CcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004234          309 VHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD--GAKRDWVAIYDECASVLYQEIDYTQEAANAE  385 (766)
Q Consensus       309 VhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~--~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~  385 (766)
                      ||.|.. +|.+||||+-|.+...- +       ........ .+.+.  ....+|..+.         .....+|++|+.
T Consensus         2 Vy~~~~~~~~~~a~K~~r~~~~~F-k-------~~~~y~~~-~~r~~~~~~~~~~~~~~---------~~~~~~E~~~L~   63 (188)
T PF01163_consen    2 VYHAIDPDGEEVAVKIYRTGRTSF-K-------RRKKYRDY-DYRFKKYRHKSSWRYLI---------REWAKKEFRNLK   63 (188)
T ss_dssp             EEEEEECTTEEEEEEEE-S---SS---------HHHHHTTT-STTSTTC--G--CHHHH---------HHHHHHHHHHHH
T ss_pred             EEEEECCCCCEEEEEEeccCceEE-E-------Eeeeeecc-cchhcccccccCHHHHH---------HHHHHHHHHHHH
Confidence            899998 89999999998875332 1       11222221 11110  0112232222         235567889998


Q ss_pred             HHHHhcCCCCccccceeeeccCCCeEEEEeecC--CCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q 004234          386 LFASNFKDMDYVKVPTIFWEYTTPQILTMEYVP--GIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG  463 (766)
Q Consensus       386 ~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyie--G~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~GffHaDpHPG  463 (766)
                      ++.+     .++.+|++|.  .++.+|||||++  |.++..+........+...+...++..+...++..|++|+||++.
T Consensus        64 ~l~~-----~Gv~vP~p~~--~~~~~ivME~I~~~G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~~~~~givHGDLs~~  136 (188)
T PF01163_consen   64 RLYE-----AGVPVPKPYD--YNRNVIVMEYIGEDGVPLPRLKDVDLSPEEPKELLEEILEEIIKMLHKAGIVHGDLSEY  136 (188)
T ss_dssp             HCCC-----TT-SS--EEE--EETTEEEEE--EETTEEGGCHHHCGGGGSTHHHHHHHHHHHHHHHHHCTTEEESS-STT
T ss_pred             HHHH-----CCccCCcEEE--EeCCEEEEEecCCCccchhhHHhccccchhHHHHHHHHHHHHHHHHHhcCceecCCChh
Confidence            8743     4688999994  468899999999  988887665443345677888888888888889999999999999


Q ss_pred             cEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004234          464 NIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  519 (766)
Q Consensus       464 NILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~  519 (766)
                      ||++.   ++++.+||||.+...+.+.-..       ++.+|...+...+...|..
T Consensus       137 NIlv~---~~~~~iIDf~qav~~~~p~a~~-------~l~RDi~ni~~fF~~~~~~  182 (188)
T PF01163_consen  137 NILVD---DGKVYIIDFGQAVDSSHPNAEE-------LLRRDIENIIRFFKKKGVQ  182 (188)
T ss_dssp             SEEEE---TTCEEE--GTTEEETTSTTHHH-------HHHHHHHHHHHHHHCCC--
T ss_pred             hEEee---cceEEEEecCcceecCCccHHH-------HHHHHHHHHHHHHHHhCCC
Confidence            99998   4599999999998887544332       3456888888888887753

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.50  E-value=1e-13  Score=149.79  Aligned_cols=187  Identities=14%  Similarity=0.053  Sum_probs=120.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|..  +|+.||||+.++.....                                 .+..+      .
T Consensus         5 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~------~   45 (324)
T cd05589           5 AVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIA---------------------------------RDEVE------S   45 (324)
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHH------H
Confidence            5799999999999998  58999999985321000                                 00000      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +..|.+-+.... .+. ++++.-..-+.+.....++||||++|++|.....  ...++...+...+.+  ..+..+|..|
T Consensus        46 l~~e~~~~~~~~-~l~-hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~~~--~~~l~~~~~~~~~~qi~~al~~lH~~~  121 (324)
T cd05589          46 LMCEKRIFETAN-SER-HPFLVNLFACFQTEDHVCFVMEYAAGGDLMMHIH--TDVFSEPRAVFYAACVVLGLQYLHENK  121 (324)
T ss_pred             HHHHHHHHHhcc-ccC-CCChhceeeEEEcCCEEEEEEcCCCCCcHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            222332222211 122 2333222222234567899999999999877542  233454444333332  3477899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  ++.++|+|||++.........      .....+.+.++++++..-+......|++++...+.+
T Consensus       122 ivHrdlkp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~------~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~e  193 (324)
T cd05589         122 IVYRDLKLDNLLLDT--EGFVKIADFGLCKEGMGFGDR------TSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYE  193 (324)
T ss_pred             eEecCCCHHHeEECC--CCcEEeCcccCCccCCCCCCc------ccccccCccccCHhHhcCCCCCcccchhhHHHHHHH
Confidence            999999999999986  899999999988754321111      011235778889998877667778899999987766


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       194 l~  195 (324)
T cd05589         194 ML  195 (324)
T ss_pred             HH
Confidence            65

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.50  E-value=2e-13  Score=148.24  Aligned_cols=180  Identities=16%  Similarity=0.192  Sum_probs=120.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|+.  +|..||+|+.+......                                   ...      .
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~-----------------------------------~~~------~   49 (331)
T cd06649          11 SELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPA-----------------------------------IRN------Q   49 (331)
T ss_pred             EeecCCCCEEEEEEEECCCCcEEEEEEeecccCHH-----------------------------------HHH------H
Confidence            5799999999999999  58999999885432111                                   111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh-
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS-  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~-  452 (766)
                      +.+|.+.+..+.     ++++ .+..++ ......++||||++|++|.++.... ..++...+.....  ...+..+|. 
T Consensus        50 ~~~E~~~l~~l~-----h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~~  122 (331)
T cd06649          50 IIRELQVLHECN-----SPYIVGFYGAF-YSDGEISICMEHMDGGSLDQVLKEA-KRIPEEILGKVSIAVLRGLAYLREK  122 (331)
T ss_pred             HHHHHHHHHHCC-----CCCCCeEEEEE-EECCEEEEEeecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHhhc
Confidence            334444444432     2222 222222 2345679999999999999875322 2233333322222  233666776 


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      +|++|+|+||.||+++.  ++.++|+|||++..+......        ...++..+++++....+..+...|++++...+
T Consensus       123 ~~ivH~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~--------~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il  192 (331)
T cd06649         123 HQIMHRDVKPSNILVNS--RGEIKLCDFGVSGQLIDSMAN--------SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSL  192 (331)
T ss_pred             CCEEcCCCChhhEEEcC--CCcEEEccCcccccccccccc--------cCCCCcCcCCHhHhcCCCCCchHhHHHHHHHH
Confidence            47999999999999986  889999999999877543221        12356778888888777777888999999877


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       193 ~el~  196 (331)
T cd06649         193 VELA  196 (331)
T ss_pred             HHHH
Confidence            6665

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.50  E-value=1.3e-13  Score=152.36  Aligned_cols=190  Identities=16%  Similarity=0.184  Sum_probs=119.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+....-  .              ..                 .+...      .
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~--~--------------~~-----------------~~~~~------~   47 (377)
T cd05629           7 KVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSE--M--------------FK-----------------KDQLA------H   47 (377)
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEEEEEEHHH--H--------------HH-----------------hHHHH------H
Confidence            6799999999999998  69999999873210  0              00                 00001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~  452 (766)
                      +.+|.+.+..+     ++++  +++++.  ......+|||||++|++|.++... ...++...+...+  +-..+..+|.
T Consensus        48 ~~~E~~il~~l-----~hp~--iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~ql~~aL~~LH~  119 (377)
T cd05629          48 VKAERDVLAES-----DSPW--VVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIK-YDTFSEDVTRFYMAECVLAIEAVHK  119 (377)
T ss_pred             HHHHHHHHHhC-----CCCC--cceEEEEEEcCCeeEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            33444444332     2233  333332  334567999999999999886432 1223333322222  2234788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHH-HHH----------------------------------
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL-LEA----------------------------------  497 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l-~~l----------------------------------  497 (766)
                      .|++|+|+||.||+++.  ++.++++|||++..+.......+ ..+                                  
T Consensus       120 ~givHrDlkp~NIll~~--~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (377)
T cd05629         120 LGFIHRDIKPDNILIDR--GGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATW  197 (377)
T ss_pred             CCeeccCCCHHHEEECC--CCCEEEeecccccccccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence            99999999999999985  88999999999864432111000 000                                  


Q ss_pred             ------HHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          498 ------FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       498 ------~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                            ...-..+++.++++++......+...|++++...+.+++.
T Consensus       198 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt  243 (377)
T cd05629         198 KKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLI  243 (377)
T ss_pred             hhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhhhc
Confidence                  0000236778899998876666778899999887766553

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.50  E-value=2.2e-13  Score=147.96  Aligned_cols=185  Identities=17%  Similarity=0.226  Sum_probs=118.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.+..       +.         ..                 .....      .
T Consensus         7 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~-------~~---------~~-----------------~~~~~------~   47 (331)
T cd05597           7 KVIGRGAFGEVAVVKMKNTGQVYAMKILNKW-------EM---------LK-----------------RAETA------C   47 (331)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHH-------HH---------hh-----------------hhhHH------H
Confidence            5799999999999998  5899999987321       00         00                 00001      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~  452 (766)
                      |..|...+..+     +++++  +..+.  +.....++||||++|++|.++.......+....+...+  +-..+..+|.
T Consensus        48 ~~~e~~~l~~~-----~~~~i--~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~  120 (331)
T cd05597          48 FREERDVLVNG-----DRRWI--TNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQ  120 (331)
T ss_pred             HHHHHHHHHhC-----CCCCC--CceEEEEecCCeEEEEEecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            23333333222     22222  22222  23456799999999999998754322233433333322  2234778999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCCHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTTA  527 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-----G~~~~~~D~~~  527 (766)
                      .|++|+|+||.||+++.  ++.++|+|||++..+.......     .....+.+.++++++...     +......|+++
T Consensus       121 ~~ivH~dlkp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Diws  193 (331)
T cd05597         121 LGYVHRDIKPDNVLLDK--NGHIRLADFGSCLRLLADGTVQ-----SNVAVGTPDYISPEILQAMEDGKGRYGPECDWWS  193 (331)
T ss_pred             CCeEECCCCHHHEEECC--CCCEEEEECCceeecCCCCCcc-----ccceeccccccCHHHHhhccccccCCCCcceeeh
Confidence            99999999999999985  8899999999987765432210     011235677888888762     44566789999


Q ss_pred             HHHHHHHHH
Q 004234          528 VRRTAQFFL  536 (766)
Q Consensus       528 l~~~i~~~l  536 (766)
                      +...+.+++
T Consensus       194 lG~~l~el~  202 (331)
T cd05597         194 LGVCMYEML  202 (331)
T ss_pred             hhhHHHHHh
Confidence            988776665

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.49  E-value=1.3e-13  Score=152.54  Aligned_cols=190  Identities=16%  Similarity=0.187  Sum_probs=118.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|+.  +|+.||||+.+..       +.                          ...+.      .-.
T Consensus         7 ~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~-------~~--------------------------~~~~~------~~~   47 (382)
T cd05625           7 KTLGIGAFGEVCLARKVDTKALYAMKTLRKK-------DV--------------------------LLRNQ------VAH   47 (382)
T ss_pred             EEEEeCCCEEEEEEEECCCCCEEEEEEEeHH-------Hh--------------------------hhHHH------HHH
Confidence            5799999999999998  5899999987321       00                          00001      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~  452 (766)
                      +.+|...+..+     ++++  +++.+.  ......+|||||++|++|.++... ...++...+...+  +-..+..+|.
T Consensus        48 ~~~E~~il~~~-----~h~~--iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~e~~~~~~~~qi~~al~~lH~  119 (382)
T cd05625          48 VKAERDILAEA-----DNEW--VVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIR-MGIFPEDLARFYIAELTCAVESVHK  119 (382)
T ss_pred             HHHHHHHHHhC-----CCCc--CCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            33444434333     2232  233332  224567999999999999886432 1123333222222  2234788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHH---------------------------------H----
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL---------------------------------L----  495 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l---------------------------------~----  495 (766)
                      .|++|+|+||.|||++.  +|.++|+|||++..+.......+                                 .    
T Consensus       120 ~~ivHrDlKp~NILl~~--~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (382)
T cd05625         120 MGFIHRDIKPDNILIDR--DGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAA  197 (382)
T ss_pred             CCeecCCCCHHHEEECC--CCCEEEeECCCCccccccccccccccccccccccccccccccccccccccccccchhhhhc
Confidence            99999999999999986  89999999999754321000000                                 0    


Q ss_pred             ----HHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          496 ----EAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       496 ----~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                          ........+.+.++++++..-.-.....|++++...+.+++.
T Consensus       198 ~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~ellt  243 (382)
T cd05625         198 RQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV  243 (382)
T ss_pred             cccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHh
Confidence                000001235678899998876666778899999988776653

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.49  E-value=1e-13  Score=150.70  Aligned_cols=198  Identities=20%  Similarity=0.217  Sum_probs=124.0

Q ss_pred             HHHhCCChhhhhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCccc
Q 004234          282 EEELGAPLDDVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKR  358 (766)
Q Consensus       282 e~elG~~~eeiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~  358 (766)
                      ++|+++...++.+.|.. ++||+|++|+||+|..  +|+.||||+.........                          
T Consensus         3 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~--------------------------   56 (343)
T cd07878           3 RQELNKTVWEVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLI--------------------------   56 (343)
T ss_pred             HHHHhHHHhhhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhH--------------------------
Confidence            45566555555555554 7999999999999998  588999998743211100                          


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceee-----eccCCCeEEEEeecCCCChhhhhhhhhcCC
Q 004234          359 DWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIF-----WEYTTPQILTMEYVPGIKINRIQSLDELGV  433 (766)
Q Consensus       359 d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~-----~e~st~~vLVMEyieG~~L~d~~~l~~~g~  433 (766)
                                    ..-.+.+|.+.+..+.    +..-+.+..++     .......+++||++ |.++.++..  ...+
T Consensus        57 --------------~~~~~~~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~--~~~l  115 (343)
T cd07878          57 --------------HARRTYRELRLLKHMK----HENVIGLLDVFTPATSIENFNEVYLVTNLM-GADLNNIVK--CQKL  115 (343)
T ss_pred             --------------HHHHHHHHHHHHHhcC----CCchhhhhhhhcccccccccCcEEEEeecC-CCCHHHHHh--cCCC
Confidence                          0001223333333321    11111111111     12234568999988 667776543  2234


Q ss_pred             CHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHH
Q 004234          434 DRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ  511 (766)
Q Consensus       434 d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~  511 (766)
                      +...+...+.+  ..+..+|..|++|+|+||+||+++.  ++.++|+|||++..++.....         ..++..++++
T Consensus       116 ~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~---------~~~t~~y~aP  184 (343)
T cd07878         116 SDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNE--DCELRILDFGLARQADDEMTG---------YVATRWYRAP  184 (343)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECC--CCCEEEcCCccceecCCCcCC---------ccccccccCc
Confidence            44443333322  3467889999999999999999985  889999999999887653211         1245667777


Q ss_pred             HHHHc-CCCCCCCCHHHHHHHHHHHHH
Q 004234          512 AMVQM-GVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       512 ~l~~l-G~~~~~~D~~~l~~~i~~~l~  537 (766)
                      ++... ...+...|++++...+.+++.
T Consensus       185 E~~~~~~~~~~~~DiwslG~il~el~~  211 (343)
T cd07878         185 EIMLNWMHYNQTVDIWSVGCIMAELLK  211 (343)
T ss_pred             hHhcCCccCCchhhhHhHHHHHHHHHH
Confidence            77654 345667899999988777654

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.49  E-value=1.6e-13  Score=142.25  Aligned_cols=183  Identities=20%  Similarity=0.233  Sum_probs=122.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +-+|.|.+|.||+|+.  +|+.||||-.+.+-.+                                  +.+..+..+|+-
T Consensus         8 ~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~k----------------------------------dGi~~talREIK   53 (318)
T KOG0659|consen    8 EKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAK----------------------------------DGINRTALREIK   53 (318)
T ss_pred             hhhcCcceEEEEEEEecCCCcEEEEEEeeccccc----------------------------------cCccHHHHHHHH
Confidence            5799999999999999  6999999988655211                                  112334567777


Q ss_pred             HHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHH--HHHHHh
Q 004234          377 YTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESY--LEQILS  452 (766)
Q Consensus       377 f~~EA~--Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~--l~qI~~  452 (766)
                      +.+|.+  |+..+.+.|.+             .+...||.||++- .|..+......-+.+..+-..+...+  +..+|.
T Consensus        54 ~Lqel~h~nIi~LiD~F~~-------------~~~l~lVfEfm~t-dLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~  119 (318)
T KOG0659|consen   54 LLQELKHPNIIELIDVFPH-------------KSNLSLVFEFMPT-DLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHS  119 (318)
T ss_pred             HHHHccCcchhhhhhhccC-------------CCceEEEEEeccc-cHHHHhcccccccCHHHHHHHHHHHHHHHHHHHh
Confidence            777765  55555554443             3556899999984 45554443444455666555544433  777899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      +.++|||+||.|+|++.  +|.+++.|||+++.+.+..+...-+    ++.+= ..+.+.+...--.....|++++...+
T Consensus       120 ~~IlHRDlKPnNLLis~--~g~lKiADFGLAr~f~~p~~~~~~~----V~TRW-YRAPELLfGsr~Yg~~VDmWavGCI~  192 (318)
T KOG0659|consen  120 KWILHRDLKPNNLLISS--DGQLKIADFGLARFFGSPNRIQTHQ----VVTRW-YRAPELLFGSRQYGTGVDMWAVGCIF  192 (318)
T ss_pred             hhhhcccCCccceEEcC--CCcEEeecccchhccCCCCcccccc----eeeee-ccChHHhccchhcCCcchhhhHHHHH
Confidence            99999999999999996  9999999999999998766654322    11111 11122222222334567888888776


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       193 AELl  196 (318)
T KOG0659|consen  193 AELL  196 (318)
T ss_pred             HHHH
Confidence            6554

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.49  E-value=2.5e-14  Score=160.09  Aligned_cols=187  Identities=19%  Similarity=0.264  Sum_probs=128.4

Q ss_pred             CCChhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHH
Q 004234          286 GAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAI  363 (766)
Q Consensus       286 G~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i  363 (766)
                      ..+++.+|.+.-  -||-||||-||.|+.  +.+.||||-+.-.-                         +...-.|.+|
T Consensus        21 k~DPEklf~dLr--EIGHGSFGAVYfArd~~n~evVAIKKMsySG-------------------------KQs~EKWqDI   73 (948)
T KOG0577|consen   21 KDDPEKLFSDLR--EIGHGSFGAVYFARDVRNSEVVAIKKMSYSG-------------------------KQSNEKWQDI   73 (948)
T ss_pred             cCCHHHHHHHHH--HhcCCccceeEEeeccCccceeeeeeccccc-------------------------cccHHHHHHH
Confidence            457788877554  499999999999999  57899999651110                         0111135555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH
Q 004234          364 YDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV  443 (766)
Q Consensus       364 ~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv  443 (766)
                      +.|        +.|.+.          +.+...|.---+|.. .+..|||||||=|- -+|+...-..++....|+....
T Consensus        74 lKE--------VrFL~~----------l~HPntieYkgCyLr-e~TaWLVMEYClGS-AsDlleVhkKplqEvEIAAi~~  133 (948)
T KOG0577|consen   74 LKE--------VRFLRQ----------LRHPNTIEYKGCYLR-EHTAWLVMEYCLGS-ASDLLEVHKKPLQEVEIAAITH  133 (948)
T ss_pred             HHH--------HHHHHh----------ccCCCcccccceeec-cchHHHHHHHHhcc-HHHHHHHHhccchHHHHHHHHH
Confidence            443        334333          333333333333322 24579999999884 4666555555566666666543


Q ss_pred             --HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCC
Q 004234          444 --ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGV  518 (766)
Q Consensus       444 --~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~---lG~  518 (766)
                        -..+..+|.++.+|+|+|.||||+++  .|.++|.|||.+...+|..      .|    -+++..|+++++-   -|-
T Consensus       134 gaL~gLaYLHS~~~IHRDiKAGNILLse--~g~VKLaDFGSAsi~~PAn------sF----vGTPywMAPEVILAMDEGq  201 (948)
T KOG0577|consen  134 GALQGLAYLHSHNRIHRDIKAGNILLSE--PGLVKLADFGSASIMAPAN------SF----VGTPYWMAPEVILAMDEGQ  201 (948)
T ss_pred             HHHHHHHHHHHhhHHhhhccccceEecC--CCeeeeccccchhhcCchh------cc----cCCccccchhHheeccccc
Confidence              34588999999999999999999996  8999999999999988843      23    3588888887763   477


Q ss_pred             CCCCCCHHHHHHH
Q 004234          519 LVPTGDTTAVRRT  531 (766)
Q Consensus       519 ~~~~~D~~~l~~~  531 (766)
                      .....|++++.-.
T Consensus       202 YdgkvDvWSLGIT  214 (948)
T KOG0577|consen  202 YDGKVDVWSLGIT  214 (948)
T ss_pred             cCCccceeeccch
Confidence            7788899888744

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.49  E-value=7.5e-14  Score=150.97  Aligned_cols=187  Identities=17%  Similarity=0.211  Sum_probs=119.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                 .+..      -.
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~------~~   47 (330)
T cd05601           7 SLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLA---------------------------------QETV------SF   47 (330)
T ss_pred             EEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHH------HH
Confidence            5799999999999998  59999999874321000                                 0000      11


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +..|...+...     +++++.-..-+.+..+..+|||||++|++|.++.......++...+...+  +-..+..+|..|
T Consensus        48 ~~~e~~i~~~~-----~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~  122 (330)
T cd05601          48 FEEERDILSIS-----NSPWIPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMG  122 (330)
T ss_pred             HHHHHHHHHhC-----CCCCCcceeeEEecCCeEEEEECCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22333333221     22332221112233456799999999999998754332334444333332  234578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH------cCCCCCCCCHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ------MGVLVPTGDTTAV  528 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~------lG~~~~~~D~~~l  528 (766)
                      ++|+|+||.||+++.  +|.++|+|||++..+......     ......+++.++++++..      .+..+...|++++
T Consensus       123 i~H~Dlkp~NIll~~--~~~~kL~Dfg~a~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Diwsl  195 (330)
T cd05601         123 YVHRDIKPENVLIDR--TGHIKLADFGSAARLTANKMV-----NSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSL  195 (330)
T ss_pred             eEcccCchHheEECC--CCCEEeccCCCCeECCCCCce-----eeecccCCccccCHHHhccccccccCCCCCcceeecc
Confidence            999999999999986  899999999999887643221     011124567788888875      3445567899988


Q ss_pred             HHHHHHHH
Q 004234          529 RRTAQFFL  536 (766)
Q Consensus       529 ~~~i~~~l  536 (766)
                      ...+.+++
T Consensus       196 G~il~el~  203 (330)
T cd05601         196 GVIAYEMI  203 (330)
T ss_pred             cceeeeec
Confidence            86655543

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.49  E-value=1.3e-13  Score=152.76  Aligned_cols=186  Identities=19%  Similarity=0.173  Sum_probs=120.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||+|+....-.                                  ...     ...-.
T Consensus        49 ~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~----------------------------------~~~-----~~~~~   89 (370)
T cd05621          49 KVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEM----------------------------------IKR-----SDSAF   89 (370)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHHh----------------------------------hhh-----hhHHH
Confidence            5799999999999999  589999998731100                                  000     00011


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +..|...+..+     +++++.-..-..+.....++||||++|++|.++...  ...+...+....  +-..+..+|..|
T Consensus        90 ~~~e~~i~~~~-----~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~~--~~~~~~~~~~~~~qil~aL~~LH~~~  162 (370)
T cd05621          90 FWEERDIMAFA-----NSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSN--YDVPEKWAKFYTAEVVLALDAIHSMG  162 (370)
T ss_pred             HHHHHHHHHhC-----CCCCEeeEEEEEEcCCEEEEEEcCCCCCcHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22333333222     223322222222334567999999999999987532  233433333222  223478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc----CCCCCCCCHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM----GVLVPTGDTTAVRR  530 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l----G~~~~~~D~~~l~~  530 (766)
                      ++|+|+||+||+++.  ++.++|+|||++..+.......     .....+++.++++++...    +..+...|++++..
T Consensus       163 IvHrDLKp~NILl~~--~~~~kL~DFG~a~~~~~~~~~~-----~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~  235 (370)
T cd05621         163 LIHRDVKPDNMLLDK--HGHLKLADFGTCMKMDETGMVR-----CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGV  235 (370)
T ss_pred             eEecCCCHHHEEECC--CCCEEEEecccceecccCCcee-----cccCCCCcccCCHHHHhccCCCCCCCcccCEEeehH
Confidence            999999999999985  8999999999998875432110     112346788899988763    23566789999998


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       236 ilyell~  242 (370)
T cd05621         236 FLFEMLV  242 (370)
T ss_pred             HHHHHHh
Confidence            7776653

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.49  E-value=4.8e-13  Score=136.03  Aligned_cols=182  Identities=18%  Similarity=0.187  Sum_probs=126.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +++|+|++|.||+|..  +|+.|++|+.++...+                                          ..-+
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~------------------------------------------~~~~   43 (253)
T cd05122           6 EKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKE------------------------------------------KKEK   43 (253)
T ss_pred             eeeccCCceEEEEEEECCCCcEEEEEEecccchh------------------------------------------HHHH
Confidence            6899999999999999  4899999988543320                                          0113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|...+..+.     ++++..+.-........+++|||++|.+|.++.......++...+...+.+  ..+..+|..|
T Consensus        44 ~~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~  118 (253)
T cd05122          44 IINEIQILKKCK-----HPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNG  118 (253)
T ss_pred             HHHHHHHHHhCC-----CCCEeEEEEEEecCCeEEEEEecCCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCC
Confidence            334444443332     232222222222346789999999999999876443234555555544433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||++++  ++.++|+|||.+..+.....       .....++..++.+++...+..+...|++++...+.+
T Consensus       119 i~h~dl~p~ni~i~~--~~~~~l~d~~~~~~~~~~~~-------~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~  189 (253)
T cd05122         119 IIHRDIKAANILLTS--DGEVKLIDFGLSAQLSDTKA-------RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIE  189 (253)
T ss_pred             EecCCCCHHHEEEcc--CCeEEEeecccccccccccc-------ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHH
Confidence            999999999999986  88999999999988876542       011234566778888877777778999999877766


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       190 l~  191 (253)
T cd05122         190 LA  191 (253)
T ss_pred             HH
Confidence            55

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.49  E-value=3.1e-13  Score=142.59  Aligned_cols=187  Identities=19%  Similarity=0.186  Sum_probs=117.8

Q ss_pred             ccccccceeEEEEEee---cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL---KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      +.||+|++|.||+|+.   .|+.||||+.+......                           .       .      ..
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~---------------------------~-------~------~~   46 (290)
T cd07862           7 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE---------------------------G-------M------PL   46 (290)
T ss_pred             eEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCC---------------------------C-------c------hH
Confidence            5799999999999987   37899999875332111                           0       0      01


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeee----ccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHH--HHHH
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVE--SYLE  448 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~----e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~lv~--~~l~  448 (766)
                      .+.+|...+..+.. +.+..-+.+..++.    +..+..+++|||++| .+.++... ...+++...+...+.+  ..+.
T Consensus        47 ~~~~e~~~l~~l~~-~~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~  124 (290)
T cd07862          47 STIREVAVLRHLET-FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGVPTETIKDMMFQLLRGLD  124 (290)
T ss_pred             HHHHHHHHHHhhcc-cCCCCcceEEEEEecccCCCCCcEEEEEccCCC-CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            12233332332221 12211122222221    123457999999986 56654322 2223444444333322  3478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      .+|..|++|+|+||.||+++.  ++.++|+|||++..++....       .....+...++++++...+..+...|++++
T Consensus       125 ~lH~~~iiH~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~Diwsl  195 (290)
T cd07862         125 FLHSHRVVHRDLKPQNILVTS--SGQIKLADFGLARIYSFQMA-------LTSVVVTLWYRAPEVLLQSSYATPVDLWSV  195 (290)
T ss_pred             HHHHCCeeeCCCCHHHEEEcC--CCCEEEccccceEeccCCcc-------cccccccccccChHHHhCCCCCCccchHHH
Confidence            899999999999999999985  88999999999987654311       111235667888888877777778899999


Q ss_pred             HHHHHHHH
Q 004234          529 RRTAQFFL  536 (766)
Q Consensus       529 ~~~i~~~l  536 (766)
                      ...+.+++
T Consensus       196 G~il~el~  203 (290)
T cd07862         196 GCIFAEMF  203 (290)
T ss_pred             HHHHHHHH
Confidence            98776665

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.48  E-value=2.3e-13  Score=150.78  Aligned_cols=184  Identities=21%  Similarity=0.236  Sum_probs=120.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||+|+....-  .                                ..+-     ..-.
T Consensus        49 ~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~--~--------------------------------~~~~-----~~~~   89 (371)
T cd05622          49 KVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFE--M--------------------------------IKRS-----DSAF   89 (371)
T ss_pred             EEEeecCCeEEEEEEECCCCcEEEEEEEEHHH--h--------------------------------hhhH-----HHHH
Confidence            6799999999999999  58999999873210  0                                0000     0011


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~  452 (766)
                      +..|...+..+     +++++  ++++.  ......++||||++|++|.++...  ..++...+...+  +-..+..+|.
T Consensus        90 ~~~e~~i~~~~-----~hp~i--v~~~~~~~~~~~~~lv~Ey~~gg~L~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH~  160 (371)
T cd05622          90 FWEERDIMAFA-----NSPWV--VQLFYAFQDDRYLYMVMEYMPGGDLVNLMSN--YDVPEKWARFYTAEVVLALDAIHS  160 (371)
T ss_pred             HHHHHHHHHhC-----CCCCC--CeEEEEEEcCCEEEEEEcCCCCCcHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHH
Confidence            23333333322     22332  23332  234557999999999999887532  234433332222  2234788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc----CCCCCCCCHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM----GVLVPTGDTTAV  528 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l----G~~~~~~D~~~l  528 (766)
                      .|++|+|+||.||+++.  +|.++|+|||++..+.......     .....+++.++++++...    +..+...|++++
T Consensus       161 ~~ivHrDLkp~NIll~~--~~~ikL~DfG~a~~~~~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSl  233 (371)
T cd05622         161 MGFIHRDVKPDNMLLDK--SGHLKLADFGTCMKMNKEGMVR-----CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSV  233 (371)
T ss_pred             CCEEeCCCCHHHEEECC--CCCEEEEeCCceeEcCcCCccc-----ccCcccCccccCHHHHhccCCCccCCCccceeeh
Confidence            99999999999999986  8999999999998875432110     012246788899998864    235677899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       234 Gvilyell~  242 (371)
T cd05622         234 GVFLYEMLV  242 (371)
T ss_pred             hHHHHHHHh
Confidence            988777653

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.48  E-value=2.8e-13  Score=149.37  Aligned_cols=200  Identities=19%  Similarity=0.166  Sum_probs=124.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcc-cchHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK-RDWVAIYDECASVLYQEI  375 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~-~d~~~i~~E~~~~l~~El  375 (766)
                      .-||+|++|.|-.|+.  +|+.|||||....-.         .+      +...+...... ..+.              
T Consensus       103 ~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~---------~~------~~~~~~~~a~~~~~~e--------------  153 (576)
T KOG0585|consen  103 KEIGSGQYGKVKLARDEVDGKLYAIKILPKKEL---------RR------QYGFPRQPAMKLMPIE--------------  153 (576)
T ss_pred             hhhcCCccceEEEEeecCCCcEEEEEeechhhh---------hh------hcccccccccccCcHH--------------
Confidence            4699999999999998  699999999832100         00      00111000000 0011              


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH---HHHHHHHHH
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA---VESYLEQIL  451 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l---v~~~l~qI~  451 (766)
                      +.++|...|.++.    +..-|..-.|+.+ .++..|||.|||..+.+........ .+. ...++..   +-..|+++|
T Consensus       154 kv~~EIailKkl~----H~nVV~LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~~-els-~~~Ar~ylrDvv~GLEYLH  227 (576)
T KOG0585|consen  154 KVRREIAILKKLH----HPNVVKLIEVLDDPESDKLYLVLEYCSKGEVKWCPPDKP-ELS-EQQARKYLRDVVLGLEYLH  227 (576)
T ss_pred             HHHHHHHHHHhcC----CcCeeEEEEeecCcccCceEEEEEeccCCccccCCCCcc-ccc-HHHHHHHHHHHHHHHHHHH
Confidence            2344555555543    2222444444443 3567799999999998876432211 011 2223333   334488999


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC----CCCCCCHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV----LVPTGDTTA  527 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~----~~~~~D~~~  527 (766)
                      .+|++|||+||.|+|++.  +|+++|.|||.+-......-+..-+.+.. .-+++..+++++...|-    .....|+++
T Consensus       228 ~QgiiHRDIKPsNLLl~~--~g~VKIsDFGVs~~~~~~~~~~~d~~L~~-tvGTPAF~APE~c~~~~~~~~~g~a~DiWa  304 (576)
T KOG0585|consen  228 YQGIIHRDIKPSNLLLSS--DGTVKISDFGVSNEFPQGSDEGSDDQLSR-TVGTPAFFAPELCSGGNSFSYSGFALDIWA  304 (576)
T ss_pred             hcCeeccccchhheEEcC--CCcEEeeccceeeecccCCccccHHHHhh-cCCCccccchHhhcCCCCccccchhhhhhh
Confidence            999999999999999996  89999999999886632211111111111 46899999999997743    223469999


Q ss_pred             HHHHHHHHH
Q 004234          528 VRRTAQFFL  536 (766)
Q Consensus       528 l~~~i~~~l  536 (766)
                      +...++-|+
T Consensus       305 lGVTLYCll  313 (576)
T KOG0585|consen  305 LGVTLYCLL  313 (576)
T ss_pred             hhhhHHHhh
Confidence            998887765

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.48  E-value=3.7e-13  Score=141.28  Aligned_cols=189  Identities=17%  Similarity=0.173  Sum_probs=121.8

Q ss_pred             hhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004234          290 DDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (766)
Q Consensus       290 eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (766)
                      .+.|..+  +.||+|++|.||+|.+  +|+.||+|+........                                   .
T Consensus         3 ~~~y~~~--~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~   45 (277)
T cd06642           3 EELFTKL--ERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAED-----------------------------------E   45 (277)
T ss_pred             HHHHHHH--HHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchH-----------------------------------H
Confidence            3444433  4699999999999998  58999999874221110                                   0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--H
Q 004234          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--S  445 (766)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~  445 (766)
                      .      -++.+|+..+.++     +++++.-..-........++||||++|+++.++..  ........+...+.+  .
T Consensus        46 ~------~~~~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~~i~~  112 (277)
T cd06642          46 I------EDIQQEITVLSQC-----DSPYITRYYGSYLKGTKLWIIMEYLGGGSALDLLK--PGPLEETYIATILREILK  112 (277)
T ss_pred             H------HHHHHHHHHHHcC-----CCCccHhhhcccccCCceEEEEEccCCCcHHHHhh--cCCCCHHHHHHHHHHHHH
Confidence            0      1234444444433     12222111111123456799999999999988643  222333333332222  3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~  525 (766)
                      .+..+|..|++|+|+||+||+++.  ++.+++.|||++..+.......      ....++..+++++....+..+...|+
T Consensus       113 ~l~~lH~~~ivH~dl~p~ni~i~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv  184 (277)
T cd06642         113 GLDYLHSERKIHRDIKAANVLLSE--QGDVKLADFGVAGQLTDTQIKR------NTFVGTPFWMAPEVIKQSAYDFKADI  184 (277)
T ss_pred             HHHHHhcCCeeccCCChheEEEeC--CCCEEEccccccccccCcchhh------hcccCcccccCHHHhCcCCCchhhhH
Confidence            367788999999999999999986  8899999999998876543211      11234666778888777667778899


Q ss_pred             HHHHHHHHHHH
Q 004234          526 TAVRRTAQFFL  536 (766)
Q Consensus       526 ~~l~~~i~~~l  536 (766)
                      +++...+.+++
T Consensus       185 ~slG~il~el~  195 (277)
T cd06642         185 WSLGITAIELA  195 (277)
T ss_pred             HHHHHHHHHHH
Confidence            99987766554

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.48  E-value=2.9e-13  Score=147.00  Aligned_cols=185  Identities=17%  Similarity=0.199  Sum_probs=117.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+++.  .++.||+|+....       +                           .....     ....
T Consensus         7 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~-------~---------------------------~~~~~-----~~~~   47 (332)
T cd05623           7 KVIGRGAFGEVAVVKLKNADKVFAMKILNKW-------E---------------------------MLKRA-----ETAC   47 (332)
T ss_pred             EEEEeCCCeEEEEEEECCCCCEEEEEEEeHH-------H---------------------------HHHhh-----HHHH
Confidence            5799999999999998  4789999987210       0                           00000     0011


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~  452 (766)
                      |..|...+..+     ++++  ++.++.  +.....+|||||++|++|.++.......++...+...+  +...+..+|.
T Consensus        48 ~~~e~~~l~~~-----~~~~--i~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~  120 (332)
T cd05623          48 FREERDVLVNG-----DNQW--ITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQ  120 (332)
T ss_pred             HHHHHHHHhhC-----CCCC--EeeEEEEEecCCEEEEEEeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            33333322221     2232  233332  33456799999999999998754322233333332222  2234778999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCCCCCCCCHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGVLVPTGDTTA  527 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~-----lG~~~~~~D~~~  527 (766)
                      .|++|+|+||.||+++.  ++.++|+|||++..+.......     .....+...++++++..     .+......|+++
T Consensus       121 ~~iiHrDlkp~Nili~~--~~~~kL~DfG~a~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwS  193 (332)
T cd05623         121 LHYVHRDIKPDNILMDM--NGHIRLADFGSCLKLMEDGTVQ-----SSVAVGTPDYISPEILQAMEDGKGKYGPECDWWS  193 (332)
T ss_pred             CCeEecCCCHHHEEECC--CCCEEEeecchheecccCCcce-----ecccccCccccCHHHHhccccCCCCCCCcCCEEe
Confidence            99999999999999985  8899999999987664322110     11124577888888876     234566789999


Q ss_pred             HHHHHHHHH
Q 004234          528 VRRTAQFFL  536 (766)
Q Consensus       528 l~~~i~~~l  536 (766)
                      +...+.+++
T Consensus       194 lGvil~ell  202 (332)
T cd05623         194 LGVCMYEML  202 (332)
T ss_pred             eHHHHHHHh
Confidence            988776665

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.48  E-value=5.4e-13  Score=136.85  Aligned_cols=187  Identities=17%  Similarity=0.163  Sum_probs=125.5

Q ss_pred             ccccccceeEEEEEeec-----CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-----G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||.|++|+||+|...     +..|+||+.++.....                                         .
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------------~   39 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEE-----------------------------------------E   39 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchh-----------------------------------------H
Confidence            36899999999999993     7899999885432211                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh--------hcCCCHHHHHHHHHH-
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD--------ELGVDRKRLGRYAVE-  444 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~--------~~g~d~~~la~~lv~-  444 (766)
                      .-++..|.+.+..+.     ++++.-..-+.......+++|||++|++|.+.....        ....+...+...+.+ 
T Consensus        40 ~~~~~~e~~~l~~~~-----~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  114 (262)
T cd00192          40 RKDFLKEARVMKKLG-----HPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQI  114 (262)
T ss_pred             HHHHHHHHHHHhhcC-----CCChheeeeeecCCCceEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHH
Confidence            113344444444442     222222221222356679999999999999975433        233455555444433 


Q ss_pred             -HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004234          445 -SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG  523 (766)
Q Consensus       445 -~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~  523 (766)
                       ..+..+|..|++|+|++|.||+++.  ++.++|+|||.+..+.......    ...-...+..+++++....+..+...
T Consensus       115 ~~al~~lH~~~i~H~di~p~nili~~--~~~~~l~dfg~~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~  188 (262)
T cd00192         115 AKGMEYLASKKFVHRDLAARNCLVGE--DLVVKISDFGLSRDVYDDDYYR----KKTGGKLPIRWMAPESLKDGIFTSKS  188 (262)
T ss_pred             HHHHHHHHcCCcccCccCcceEEECC--CCcEEEcccccccccccccccc----cccCCCcCccccCHHHhccCCcchhh
Confidence             2368899999999999999999986  7999999999998876543200    00112345667888888777777788


Q ss_pred             CHHHHHHHHHHHHH
Q 004234          524 DTTAVRRTAQFFLN  537 (766)
Q Consensus       524 D~~~l~~~i~~~l~  537 (766)
                      |++++...+.+++.
T Consensus       189 Di~slG~il~~l~~  202 (262)
T cd00192         189 DVWSFGVLLWEIFT  202 (262)
T ss_pred             ccHHHHHHHHHHHh
Confidence            99999887766653

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.47  E-value=4.5e-13  Score=148.55  Aligned_cols=85  Identities=15%  Similarity=0.062  Sum_probs=64.1

Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~  525 (766)
                      .+..+|..|++|+|+||.||++++  ++.++|+|||++..+.......    ..+.......+++++....+..+...|+
T Consensus       226 ~l~~lH~~~ivH~Dlkp~Nill~~--~~~~kl~DfG~a~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~sDi  299 (375)
T cd05104         226 GMSFLASKNCIHRDLAARNILLTH--GRITKICDFGLARDIRNDSNYV----VKGNARLPVKWMAPESIFNCVYTFESDV  299 (375)
T ss_pred             HHHHHHHCCeeccCCchhhEEEEC--CCcEEEecCccceeccCccccc----ccCCCCCCcceeChhHhcCCCCCCCCCH
Confidence            467889999999999999999985  7889999999998775432211    1111122345788888877778888999


Q ss_pred             HHHHHHHHHHH
Q 004234          526 TAVRRTAQFFL  536 (766)
Q Consensus       526 ~~l~~~i~~~l  536 (766)
                      +++...+.+++
T Consensus       300 ~slG~~l~ell  310 (375)
T cd05104         300 WSYGILLWEIF  310 (375)
T ss_pred             HHHHHHHHHHH
Confidence            99998776655

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.47  E-value=2.7e-13  Score=155.36  Aligned_cols=186  Identities=16%  Similarity=0.089  Sum_probs=123.3

Q ss_pred             ccccccceeEEEEEee--c-CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--K-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~-G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      +.+|.|++|.||+|..  + ++.||+|....+...                                          ...
T Consensus        73 ~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~------------------------------------------~~~  110 (478)
T PTZ00267         73 TLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDER------------------------------------------QAA  110 (478)
T ss_pred             EEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHH------------------------------------------HHH
Confidence            6799999999999987  4 688999965211000                                          011


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh--h-hcCCCHHHHHHHH--HHHHHHHH
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL--D-ELGVDRKRLGRYA--VESYLEQI  450 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l--~-~~g~d~~~la~~l--v~~~l~qI  450 (766)
                      .+..|+..+..+     ++++|.-..-+.......+|||||++|++|.+....  . ...++...+...+  +...+..+
T Consensus       111 ~~~~E~~~l~~l-----~Hpniv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~l  185 (478)
T PTZ00267        111 YARSELHCLAAC-----DHFGIVKHFDDFKSDDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEV  185 (478)
T ss_pred             HHHHHHHHHHhC-----CCCCEeEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            233455444433     223332222222334678999999999999875421  1 1224444433332  23447889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|+||.||+++.  ++.++|+|||++..+........    .....+++.+++++....+..+...|++++..
T Consensus       186 H~~~ivHrDlkp~NIll~~--~~~~kL~DFgla~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~  259 (478)
T PTZ00267        186 HSRKMMHRDLKSANIFLMP--TGIIKLGDFGFSKQYSDSVSLDV----ASSFCGTPYYLAPELWERKRYSKKADMWSLGV  259 (478)
T ss_pred             HhCCEEECCcCHHhEEECC--CCcEEEEeCcCceecCCcccccc----ccccCCCccccCHhHhCCCCCCcHHhHHHHHH
Confidence            9999999999999999985  88999999999988765432111    11223677899999888777778889999998


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       260 ~l~el~t  266 (478)
T PTZ00267        260 ILYELLT  266 (478)
T ss_pred             HHHHHHh
Confidence            7776653

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.47  E-value=6.8e-13  Score=139.96  Aligned_cols=184  Identities=15%  Similarity=0.111  Sum_probs=119.4

Q ss_pred             ccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       301 IgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      ||+|++|+||+++.  +|+.||+|+........                                       ...+-.+.
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~---------------------------------------~~~~~~~~   41 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKK---------------------------------------KSGEKMAL   41 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhc---------------------------------------chhhHHHH
Confidence            68999999999998  59999999873210000                                       00011122


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYA--VESYLEQILSHGF  455 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~l--v~~~l~qI~~~Gf  455 (766)
                      .|...+.++     +++++.-..-+.+.....+++|||++|++|.+.... ...+.+...+...+  +...+..+|..|+
T Consensus        42 ~E~~il~~l-----~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i  116 (277)
T cd05607          42 LEKEILEKV-----NSPFIVNLAYAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDI  116 (277)
T ss_pred             HHHHHHHhc-----CCCcEEEEEEEEecCCeEEEEEecCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            243333333     223332211122334567999999999999875432 22234544444332  2234788899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|++|.||+++.  ++.++|+|||++..+......       ....+...+++++....+..+...|++++...+.++
T Consensus       117 vH~dikp~Nili~~--~~~~~l~Dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el  187 (277)
T cd05607         117 VYRDMKPENVLLDD--QGNCRLSDLGLAVELKDGKTI-------TQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEM  187 (277)
T ss_pred             EEccCChHhEEEcC--CCCEEEeeceeeeecCCCcee-------eccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHH
Confidence            99999999999986  889999999998876543211       012356678888888777777889999998877766


Q ss_pred             HH
Q 004234          536 LN  537 (766)
Q Consensus       536 l~  537 (766)
                      +.
T Consensus       188 ~~  189 (277)
T cd05607         188 VA  189 (277)
T ss_pred             Hh
Confidence            53

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.47  E-value=4.9e-13  Score=148.13  Aligned_cols=138  Identities=16%  Similarity=0.148  Sum_probs=95.2

Q ss_pred             ccccccceeEEEEEee---cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL---KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      +.||+|+||+||+|++   +|+.||||+..+.....                             .  -+.      ..-
T Consensus        24 ~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~-----------------------------~--~~~------~~~   66 (365)
T PRK09188         24 AVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWW-----------------------------S--KPL------ARH   66 (365)
T ss_pred             cEEeecCcEEEEEEEEcCCCCeEEEEEEeccccccc-----------------------------c--cHH------HHH
Confidence            6799999999999987   47888999863321100                             0  000      112


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCc
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGF  455 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~Gf  455 (766)
                      .|.+|++.+.++.+     +++ +|.++.  ....+|||||++|.+|....   ..  ....+...+ ...+.++|..|+
T Consensus        67 ~~~~E~~iL~~L~h-----~~i-v~~l~~--~~~~~LVmE~~~G~~L~~~~---~~--~~~~~~~~i-~~aL~~lH~~gI  132 (365)
T PRK09188         67 LAAREIRALKTVRG-----IGV-VPQLLA--TGKDGLVRGWTEGVPLHLAR---PH--GDPAWFRSA-HRALRDLHRAGI  132 (365)
T ss_pred             HHHHHHHHHHhccC-----CCC-CcEEEE--cCCcEEEEEccCCCCHHHhC---cc--chHHHHHHH-HHHHHHHHHCCC
Confidence            36677777766632     233 455664  35689999999999986421   11  112333333 356788999999


Q ss_pred             cccCC-CCCcEEEeecCCCcEEEEeecceeccChh
Q 004234          456 FHADP-HPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (766)
Q Consensus       456 fHaDp-HPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (766)
                      +|+|+ ||+||+++.  +++++|+|||++..+.+.
T Consensus       133 iHrDL~KP~NILv~~--~~~ikLiDFGlA~~~~~~  165 (365)
T PRK09188        133 THNDLAKPQNWLMGP--DGEAAVIDFQLASVFRRR  165 (365)
T ss_pred             eeCCCCCcceEEEcC--CCCEEEEECccceecccC
Confidence            99999 899999975  789999999999988654

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.47  E-value=1.7e-13  Score=152.81  Aligned_cols=189  Identities=18%  Similarity=0.186  Sum_probs=136.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|.|.||+||+++.  +|+.+|+|+........                        . .              ..-+
T Consensus        41 ~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~------------------------~-~--------------~~~~   81 (382)
T KOG0032|consen   41 RELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRG------------------------K-E--------------DRED   81 (382)
T ss_pred             hhhCCCCceEEEEEEecCCCceeEEEEeehhhccc------------------------c-c--------------cHHH
Confidence            5799999999999999  59999999873211100                        0 0              1125


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      ..+|.+.++++..   +..-|.++.+|. ..+..++|||+++|+.|-+.....  .+.....+..+  +...++++|..|
T Consensus        82 v~~Ev~il~~l~~---hpniv~l~~~~e-~~~~~~lvmEL~~GGeLfd~i~~~--~~sE~da~~~~~~il~av~~lH~~g  155 (382)
T KOG0032|consen   82 VRREVAILQQLSG---HPNIVQLKDAFE-DPDSVYLVMELCEGGELFDRIVKK--HYSERDAAGIIRQILEAVKYLHSLG  155 (382)
T ss_pred             HHHHHHHHHhccC---CCCEEEEEEEEE-cCCeEEEEEEecCCchHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            5667777766543   333466666663 456789999999999999854322  24433333222  334578899999


Q ss_pred             ccccCCCCCcEEEeecCC--CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNG--GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~--g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      ++|+|+||+|+|+....+  +.++++|||++..+.+..+       ..-..+.+.+++++........+..|++++....
T Consensus       156 vvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~-------~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~  228 (382)
T KOG0032|consen  156 VVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGER-------LHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVIL  228 (382)
T ss_pred             ceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCce-------EeeecCCccccCchhhcCCCCCcccchhHHHHHH
Confidence            999999999999986333  5899999999999987322       2234679999999999877778889999999988


Q ss_pred             HHHHHHH
Q 004234          533 QFFLNSF  539 (766)
Q Consensus       533 ~~~l~~~  539 (766)
                      +.++..+
T Consensus       229 yiLL~G~  235 (382)
T KOG0032|consen  229 YILLSGV  235 (382)
T ss_pred             HHHhhCC
Confidence            8887654

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.47  E-value=4.3e-13  Score=140.29  Aligned_cols=184  Identities=12%  Similarity=0.106  Sum_probs=118.5

Q ss_pred             ccccccceeEEEEEee-----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|+||+||+|++     .+..||+|+.+.+....                                         .
T Consensus        11 ~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~-----------------------------------------~   49 (266)
T cd05064          11 RILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDK-----------------------------------------Q   49 (266)
T ss_pred             eeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHH-----------------------------------------H
Confidence            5799999999999986     25789999875432111                                         1


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      +.+|.+|...+.++    .+ +++ .+...+ ......++||||++|++|.++.......++...+...+.+  ..+..+
T Consensus        50 ~~~~~~e~~~l~~l----~h-~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~l  123 (266)
T cd05064          50 RRGFLAEALTLGQF----DH-SNIVRLEGVI-TRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYL  123 (266)
T ss_pred             HHHHHHHHHHHhcC----CC-CCcCeEEEEE-ecCCCcEEEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            12344555544443    22 332 222222 3345689999999999999875433233444444333322  346789


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|++|.||+++.  ++.+++.|||..........  .. .  ........+++++....+..+...|++++.-
T Consensus       124 H~~~iiH~dikp~nili~~--~~~~~l~dfg~~~~~~~~~~--~~-~--~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  196 (266)
T cd05064         124 SEMGYVHKGLAAHKVLVNS--DLVCKISGFRRLQEDKSEAI--YT-T--MSGKSPVLWAAPEAIQYHHFSSASDVWSFGI  196 (266)
T ss_pred             HHCCEeeccccHhhEEEcC--CCcEEECCCcccccccccch--hc-c--cCCCCceeecCHHHHhhCCccchhHHHHHHH
Confidence            9999999999999999985  88999999998765432211  00 0  0011224567788777777778889999987


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       197 ~l~ell  202 (266)
T cd05064         197 VMWEVM  202 (266)
T ss_pred             HHHHHh
Confidence            766543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.47  E-value=2.4e-13  Score=145.10  Aligned_cols=184  Identities=17%  Similarity=0.110  Sum_probs=114.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                         ....
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~-----------------------------------------~~~~   49 (303)
T cd07869          11 EKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEG-----------------------------------------TPFT   49 (303)
T ss_pred             eeEEecCCEEEEEEEECCCCCEEEEEEeccccccc-----------------------------------------cchh
Confidence            6899999999999998  58999999874221100                                         0012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|+..+..+    . ++++....-+.......++||||++|. +.+.........+...+...+.+  ..+..+|..|
T Consensus        50 ~~~E~~~l~~l----~-h~niv~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~  123 (303)
T cd07869          50 AIREASLLKGL----K-HANIVLLHDIIHTKETLTLVFEYVHTD-LCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRY  123 (303)
T ss_pred             HHHHHHHHhhC----C-CCCcCeEEEEEecCCeEEEEEECCCcC-HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            23444444433    2 233332222223356679999999864 44432222233455544443333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||+||+++.  ++.++|+|||++...+......      .-..++..++++++..- .......|++++...+.
T Consensus       124 ivH~dlkp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~  195 (303)
T cd07869         124 ILHRDLKPQNLLISD--TGELKLADFGLARAKSVPSHTY------SNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFV  195 (303)
T ss_pred             eecCCCCHHHEEECC--CCCEEECCCCcceeccCCCccC------CCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHH
Confidence            999999999999986  8899999999987654321110      00123556777776542 33455679999988776


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       196 ~l~~  199 (303)
T cd07869         196 EMIQ  199 (303)
T ss_pred             HHHh
Confidence            6553

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.47  E-value=3e-13  Score=143.46  Aligned_cols=181  Identities=13%  Similarity=0.064  Sum_probs=113.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||+|+.+......                           .              ...
T Consensus        11 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------~--------------~~~   49 (288)
T cd07871          11 DKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEG---------------------------A--------------PCT   49 (288)
T ss_pred             eEEecCCCEEEEEEEECCCCCEEEEEEecccccCC---------------------------c--------------chh
Confidence            6799999999999998  58999999874321100                           0              012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~  452 (766)
                      +.+|.+.+.++    . +++|  .+++.  ......++||||++| ++.+.........+...+...+  +-..+..+|.
T Consensus        50 ~~~E~~~l~~l----~-h~ni--v~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~  121 (288)
T cd07871          50 AIREVSLLKNL----K-HANI--VTLHDIIHTERCLTLVFEYLDS-DLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHK  121 (288)
T ss_pred             HHHHHHHHHhC----C-CCCE--eeEEEEEcCCCeEEEEEeCCCc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            23344444443    2 2333  23332  233456899999998 6666543222223333333222  2234678899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRT  531 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~  531 (766)
                      .|++|+|+||.||+++.  ++.++++|||++..........      .-..+...++++++..- ...+...|++++...
T Consensus       122 ~~ivH~dlkp~Nil~~~--~~~~kl~DfG~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~  193 (288)
T cd07871         122 RKILHRDLKPQNLLINE--KGELKLADFGLARAKSVPTKTY------SNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCI  193 (288)
T ss_pred             CCcccCCCCHHHEEECC--CCCEEECcCcceeeccCCCccc------cCceecccccChHHhcCCcccCcHHHHHHHHHH
Confidence            99999999999999986  8899999999987654322110      01123556777776643 234566799999877


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       194 l~~l~  198 (288)
T cd07871         194 LYEMA  198 (288)
T ss_pred             HHHHH
Confidence            76654

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.47  E-value=5.3e-13  Score=138.26  Aligned_cols=179  Identities=14%  Similarity=0.150  Sum_probs=120.8

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.+|+|++|.||+|..+|+.|++|..+.+..                                            .-+|.
T Consensus        12 ~~lg~g~~~~v~~~~~~~~~~~~k~~~~~~~--------------------------------------------~~~~~   47 (256)
T cd05082          12 QTIGKGEFGDVMLGDYRGNKVAVKCIKNDAT--------------------------------------------AQAFL   47 (256)
T ss_pred             eeecccCCCeEEEEEEcCCcEEEEEeCCCch--------------------------------------------HHHHH
Confidence            6799999999999999999999997632100                                            01344


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc-CCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~-g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      +|+..+.++.    +..-+.....+.+..+..+++|||++|++|.++...... ..+...+...+.+  ..+..+|..|+
T Consensus        48 ~e~~~l~~l~----~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  123 (256)
T cd05082          48 AEASVMTQLR----HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNF  123 (256)
T ss_pred             HHHHHHHhCC----CCCeeeEEEEEEcCCCceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            5555555442    222222222333334567999999999999986543222 1333433333322  34788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|++|+||++++  ++.++++|||++........         .......++++++...+..+...|++++.-.+.++
T Consensus       124 ~H~dlkp~nil~~~--~~~~kl~dfg~~~~~~~~~~---------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l  192 (256)
T cd05082         124 VHRDLAARNVLVSE--DNVAKVSDFGLTKEASSTQD---------TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEI  192 (256)
T ss_pred             eccccchheEEEcC--CCcEEecCCccceeccccCC---------CCccceeecCHHHHccCCCCchhhhHHHHHHHHHH
Confidence            99999999999986  89999999999876543221         11223457888888777777888999998776655


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       193 ~  193 (256)
T cd05082         193 Y  193 (256)
T ss_pred             H
Confidence            4

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.47  E-value=6.1e-13  Score=140.94  Aligned_cols=186  Identities=17%  Similarity=0.098  Sum_probs=122.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|..  +|+.||||+........                                       -..+..
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------------------~~~~~~   46 (285)
T cd05605           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK---------------------------------------RKGEAM   46 (285)
T ss_pred             EEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhh---------------------------------------hhhHHH
Confidence            5699999999999998  58999999873321100                                       011234


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|++.+.++.    +..-+.+...+ ......+++|||++|+.|.+..... ...++...+...+.+  ..+..+|..
T Consensus        47 ~~~E~~~l~~l~----h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~  121 (285)
T cd05605          47 ALNEKQILEKVN----SRFVVSLAYAY-ETKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRE  121 (285)
T ss_pred             HHHHHHHHHhcC----CCCEeeeeeee-cCCCeEEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            455666555542    21112222222 2335689999999999998754322 223444444333333  336788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|.||++++  ++.++++|||++..+......       .-..+...++++++..-+..+...|++++...+.
T Consensus       122 ~ivH~dlkp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~  192 (285)
T cd05605         122 RIVYRDLKPENILLDD--YGHIRISDLGLAVEIPEGETI-------RGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIY  192 (285)
T ss_pred             CcEecCCCHHHEEECC--CCCEEEeeCCCceecCCCCcc-------ccccCCCCccCcHHhcCCCCCccccchhHHHHHH
Confidence            9999999999999985  789999999998876533211       0112456677888876666677789999987776


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       193 el~~  196 (285)
T cd05605         193 EMIE  196 (285)
T ss_pred             HHHH
Confidence            6553

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.46  E-value=3e-13  Score=142.48  Aligned_cols=186  Identities=16%  Similarity=0.171  Sum_probs=119.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                  +....      
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~----------------------------------~~~~~------   46 (287)
T cd07848           7 GVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENE----------------------------------EVKET------   46 (287)
T ss_pred             EEecccCCEEEEEEEECCCCcEEEEEEEecccccc----------------------------------cchhh------
Confidence            5799999999999999  58999999874321100                                  00111      


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|...+..+.    +..-+.+..++ +.....++||||++|..+..+... ..+.+...+...+.+  ..+..+|..|
T Consensus        47 ~~~E~~~l~~l~----h~~iv~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~  120 (287)
T cd07848          47 TLRELKMLRTLK----QENIVELKEAF-RRRGKLYLVFEYVEKNMLELLEEM-PNGVPPEKVRSYIYQLIKAIHWCHKND  120 (287)
T ss_pred             HHHHHHHHHhCC----CccccchhhhE-ecCCEEEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            122333332221    11112222222 234567999999999877655322 223444444333332  3477889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||+||+++.  ++.++|+|||++..+.........     ...++..++++++...+..+...|++++...+.+
T Consensus       121 i~H~dlkp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~e  193 (287)
T cd07848         121 IVHRDIKPENLLISH--NDVLKLCDFGFARNLSEGSNANYT-----EYVATRWYRSPELLLGAPYGKAVDMWSVGCILGE  193 (287)
T ss_pred             eecCCCCHHHEEEcC--CCcEEEeeccCccccccccccccc-----ccccccccCCcHHHcCCCCCCchhHHhHHHHHHH
Confidence            999999999999985  889999999999887543222111     1224566788888776667778899999987766


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       194 l~~  196 (287)
T cd07848         194 LSD  196 (287)
T ss_pred             HHh
Confidence            653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.46  E-value=2.4e-13  Score=150.41  Aligned_cols=186  Identities=19%  Similarity=0.211  Sum_probs=119.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+....-       +                           ...     ...-.
T Consensus        49 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~-------~---------------------------~~~-----~~~~~   89 (370)
T cd05596          49 KVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFE-------M---------------------------IKR-----SDSAF   89 (370)
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHH-------h---------------------------hhh-----hhHHH
Confidence            6799999999999998  58999999873210       0                           000     00112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +..|...+..+     +++++.-..-+.+.....++||||++|++|.++..  ...++...+....  +-..+..+|..|
T Consensus        90 ~~~e~~il~~~-----~h~~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~--~~~l~~~~~~~~~~qi~~aL~~LH~~~  162 (370)
T cd05596          90 FWEERDIMAHA-----NSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNLMS--NYDIPEKWARFYTAEVVLALDAIHSMG  162 (370)
T ss_pred             HHHHHHHHHhC-----CCCCcceEEEEEecCCEEEEEEcCCCCCcHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33344333332     22332211122233456799999999999988653  2233433333222  223478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc----CCCCCCCCHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM----GVLVPTGDTTAVRR  530 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l----G~~~~~~D~~~l~~  530 (766)
                      ++|+|+||.||+++.  ++.++|+|||++..+.......     .....+.+.++++++..-    +..+...|++++..
T Consensus       163 ivHrDLkp~NILl~~--~~~~kL~DfG~~~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGv  235 (370)
T cd05596         163 FIHRDVKPDNMLLDK--SGHLKLADFGTCMKMDANGMVR-----CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGV  235 (370)
T ss_pred             eeccCCCHHHEEEcC--CCCEEEEeccceeeccCCCccc-----CCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhH
Confidence            999999999999986  8999999999998775432110     012346778888988753    23566789999998


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       236 ilyellt  242 (370)
T cd05596         236 FLYEMLV  242 (370)
T ss_pred             HHHHHHh
Confidence            7776653

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.46  E-value=2.8e-13  Score=156.12  Aligned_cols=122  Identities=12%  Similarity=0.128  Sum_probs=88.3

Q ss_pred             eEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004234          410 QILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (766)
Q Consensus       410 ~vLVMEyieG~~L~d~~~l~~---~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (766)
                      .++||||++|++|.+......   ..+....+...+.+  ..++.+|..|++|+|+||.||+++.  ++.++|+|||++.
T Consensus       114 i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~--~~~vkL~DFGls~  191 (496)
T PTZ00283        114 IALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCS--NGLVKLGDFGFSK  191 (496)
T ss_pred             EEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeC--CCCEEEEecccCe
Confidence            579999999999988653211   12334443333333  3478899999999999999999986  8899999999998


Q ss_pred             ccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          485 SISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       485 ~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      .+.........    ....+++.++++++...+..+...|++++...+.+++.
T Consensus       192 ~~~~~~~~~~~----~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLlt  240 (496)
T PTZ00283        192 MYAATVSDDVG----RTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLT  240 (496)
T ss_pred             ecccccccccc----ccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            76543221111    11246778899999887777888999999988777654

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.46  E-value=7.6e-13  Score=137.19  Aligned_cols=181  Identities=19%  Similarity=0.249  Sum_probs=121.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|..  +|+.|++|+...+....                                         .+-+
T Consensus         7 ~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------------~~~~   45 (265)
T cd06605           7 GELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEA-----------------------------------------IQKQ   45 (265)
T ss_pred             HHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChH-----------------------------------------HHHH
Confidence            5799999999999999  48999999875432211                                         1112


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh-
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS-  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~-  452 (766)
                      +.+|...+.++.     ++++ .+...+ ...+..+++|||++|.+|.++........+...+...+.+  ..+..+|. 
T Consensus        46 ~~~e~~~l~~~~-----~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~  119 (265)
T cd06605          46 ILRELDILHKCN-----SPYIVGFYGAF-YNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEK  119 (265)
T ss_pred             HHHHHHHHHHCC-----CCchhhhheee-ecCCEEEEEEEecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence            333433333321     2222 122222 2246679999999999999875432233444444333322  23677888 


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      .|++|+|++|+||++++  ++.++|+|||.+..+.......        ..++..++.++...........|++++...+
T Consensus       120 ~~i~H~dl~~~ni~~~~--~~~~~l~d~g~~~~~~~~~~~~--------~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l  189 (265)
T cd06605         120 HKIIHRDVKPSNILVNS--RGQIKLCDFGVSGQLVNSLAKT--------FVGTSSYMAPERIQGNDYSVKSDIWSLGLSL  189 (265)
T ss_pred             CCeecCCCCHHHEEECC--CCCEEEeecccchhhHHHHhhc--------ccCChhccCHHHHcCCCCCchhhHHHHHHHH
Confidence            99999999999999986  8899999999988775433221        3456678888888777677778999998777


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       190 ~~l~  193 (265)
T cd06605         190 IELA  193 (265)
T ss_pred             HHHH
Confidence            6655

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.46  E-value=1.7e-12  Score=139.73  Aligned_cols=199  Identities=19%  Similarity=0.200  Sum_probs=128.8

Q ss_pred             HHHHHhCCChhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 004234          280 IVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK  357 (766)
Q Consensus       280 iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~  357 (766)
                      +...-++.++++.|..  .+.+|+|++|+||+|+.  +|+.||+|+....-...                          
T Consensus        14 ~~~~~~~~~~~~~f~~--~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~--------------------------   65 (317)
T cd06635          14 IAELFFKEDPEKLFTD--LREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQS--------------------------   65 (317)
T ss_pred             HHHHhcCCCchhhhhh--hheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCc--------------------------
Confidence            4555677788888764  35799999999999998  58999999873221100                          


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHH
Q 004234          358 RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR  437 (766)
Q Consensus       358 ~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~  437 (766)
                             .+      ...++.+|++.+.++.    +..-+.+...+ ......++||||++| ++.+........++...
T Consensus        66 -------~~------~~~~~~~e~~~l~~l~----h~~iv~~~~~~-~~~~~~~lv~e~~~g-~l~~~~~~~~~~l~~~~  126 (317)
T cd06635          66 -------NE------KWQDIIKEVKFLQRIK----HPNSIEYKGCY-LREHTAWLVMEYCLG-SASDLLEVHKKPLQEVE  126 (317)
T ss_pred             -------hH------HHHHHHHHHHHHHhCC----CCCEEEEEEEE-eeCCeEEEEEeCCCC-CHHHHHHHhcCCCCHHH
Confidence                   00      1123445555444432    22222222222 234567999999987 56555433333345555


Q ss_pred             HHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004234          438 LGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (766)
Q Consensus       438 la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~  515 (766)
                      +...+.+  ..+..+|..|++|+|++|+||+++.  ++.++++|||++...+....          ..+...++++++..
T Consensus       127 ~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~----------~~~~~~y~aPE~~~  194 (317)
T cd06635         127 IAAITHGALQGLAYLHSHNMIHRDIKAGNILLTE--PGQVKLADFGSASIASPANS----------FVGTPYWMAPEVIL  194 (317)
T ss_pred             HHHHHHHHHHHHHHHHHCCcccCCCCcccEEECC--CCCEEEecCCCccccCCccc----------ccCCccccChhhhh
Confidence            4443332  3467889999999999999999985  88999999999876654321          12445567777653


Q ss_pred             ---cCCCCCCCCHHHHHHHHHHHHH
Q 004234          516 ---MGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       516 ---lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                         .+..++..|++++...+.+++.
T Consensus       195 ~~~~~~~~~~~Dv~slGvil~el~~  219 (317)
T cd06635         195 AMDEGQYDGKVDVWSLGITCIELAE  219 (317)
T ss_pred             cCCCCCCCccccHHHHHHHHHHHHh
Confidence               3556778899999887766553

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.46  E-value=7.9e-13  Score=140.07  Aligned_cols=186  Identities=16%  Similarity=0.089  Sum_probs=123.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|..  +|+.||+|+..+.....                                       -..+..
T Consensus         6 ~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------------~~~~~~   46 (285)
T cd05632           6 RVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKK---------------------------------------RKGESM   46 (285)
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhh---------------------------------------hhHHHH
Confidence            5799999999999999  58999999874321100                                       001123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|.+.+.++.    +...+.+...+ ...+..+++|||++|+.+.+..... ...++...+...+.+  ..+..+|..
T Consensus        47 ~~~E~~il~~l~----~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~  121 (285)
T cd05632          47 ALNEKQILEKVN----SQFVVNLAYAY-ETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRE  121 (285)
T ss_pred             HHHHHHHHHHcC----CcCceeEEEEE-ecCCEEEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            445665555543    21122222222 2345678999999999998754322 223555554444333  336788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||+||++++  ++.++++|||++..++.....       ....+...++++++...+..+...|++++...+.
T Consensus       122 ~iiH~dikp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~-------~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~  192 (285)
T cd05632         122 NTVYRDLKPENILLDD--YGHIRISDLGLAVKIPEGESI-------RGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIY  192 (285)
T ss_pred             CeeecCCCHHHEEECC--CCCEEEecCCcceecCCCCcc-------cCCCCCcCccChHHhcCCCCCcccchHHHHHHHH
Confidence            9999999999999985  789999999998776533211       0123566778888887677777889999987766


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       193 ~l~~  196 (285)
T cd05632         193 EMIE  196 (285)
T ss_pred             HHHh
Confidence            6543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.46  E-value=5.8e-14  Score=153.64  Aligned_cols=191  Identities=19%  Similarity=0.245  Sum_probs=132.3

Q ss_pred             CChhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHH
Q 004234          287 APLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIY  364 (766)
Q Consensus       287 ~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~  364 (766)
                      .+++..|..+  +-||.||||.||+|..  .++.||+|+..-+-.+                                  
T Consensus         9 ~~~~~~~~~~--~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~----------------------------------   52 (467)
T KOG0201|consen    9 IDPELLYTKL--ELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAE----------------------------------   52 (467)
T ss_pred             CCcccccccc--hhccccccceeeeeeeccccceEEEEEechhhcc----------------------------------
Confidence            3455666666  4699999999999999  5999999998221111                                  


Q ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHH--
Q 004234          365 DECASVLYQEIDYTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGR--  440 (766)
Q Consensus       365 ~E~~~~l~~ElDf~~EA~--Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~--  440 (766)
                      +|. +-+.+|+.+..+.+  |+.+....+           +  ..+..+++|||+.|+++.++...... .+...++.  
T Consensus        53 deI-ediqqei~~Ls~~~~~~it~yygsy-----------l--~g~~LwiiMey~~gGsv~~lL~~~~~-~~E~~i~~il  117 (467)
T KOG0201|consen   53 DEI-EDIQQEISVLSQCDSPNITEYYGSY-----------L--KGTKLWIIMEYCGGGSVLDLLKSGNI-LDEFEIAVIL  117 (467)
T ss_pred             hhh-HHHHHHHHHHHhcCcchHHhhhhhe-----------e--ecccHHHHHHHhcCcchhhhhccCCC-Cccceeeeeh
Confidence            111 12334444444433  333322221           1  14667999999999999997543322 13333332  


Q ss_pred             HHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004234          441 YAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (766)
Q Consensus       441 ~lv~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~  520 (766)
                      ..+...+..+|.++.+|+|+|+.||++..  +|.+++.|||.+++++......  ..|    -+++-+|+++++..--..
T Consensus       118 re~l~~l~ylH~~~kiHrDIKaanil~s~--~g~vkl~DfgVa~ql~~~~~rr--~tf----vGTPfwMAPEVI~~~~Y~  189 (467)
T KOG0201|consen  118 REVLKGLDYLHSEKKIHRDIKAANILLSE--SGDVKLADFGVAGQLTNTVKRR--KTF----VGTPFWMAPEVIKQSGYD  189 (467)
T ss_pred             HHHHHHhhhhhhcceecccccccceeEec--cCcEEEEecceeeeeechhhcc--ccc----cccccccchhhhcccccc
Confidence            23445588899999999999999999996  7999999999999998766543  233    358999999999964567


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFFL  536 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~l  536 (766)
                      ..+|+++|.-.+.++.
T Consensus       190 ~KADIWSLGITaiEla  205 (467)
T KOG0201|consen  190 TKADIWSLGITAIELA  205 (467)
T ss_pred             chhhhhhhhHHHHHHh
Confidence            7889999987665543

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.46  E-value=8.6e-14  Score=147.94  Aligned_cols=187  Identities=16%  Similarity=0.147  Sum_probs=122.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +-|++|+||.||||++  +++-||+|-.+++-+..                       +.  .+         +-.+|++
T Consensus        82 nrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~-----------------------GF--PI---------tsLREIn  127 (419)
T KOG0663|consen   82 NRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKE-----------------------GF--PI---------TSLREIN  127 (419)
T ss_pred             hhcccCcceeEEEeccCCcceeEEeeecccccccC-----------------------CC--cc---------hhHHHHH
Confidence            5699999999999999  58999999886654322                       11  11         1123333


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                            .+.+++    +..-|.+-.|+..- -+..+||||||+- .|..+...-...+...++-....+  ..++.+|..
T Consensus       128 ------iLl~~~----H~NIV~vkEVVvG~~~d~iy~VMe~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~  196 (419)
T KOG0663|consen  128 ------ILLKAR----HPNIVEVKEVVVGSNMDKIYIVMEYVEH-DLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDN  196 (419)
T ss_pred             ------HHHhcC----CCCeeeeEEEEeccccceeeeeHHHHHh-hHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhc
Confidence                  333332    33345566655432 2457999999985 344332222222333333222222  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      .++|||+||.|+|+++  .|.+++.|||+++.++.. ...+..+++.+..+-++    .++..-..+...|++++.-.+.
T Consensus       197 wilHRDLK~SNLLm~~--~G~lKiaDFGLAR~ygsp-~k~~T~lVVTLWYRaPE----LLLG~~tyst~iDMWSvGCI~a  269 (419)
T KOG0663|consen  197 WILHRDLKTSNLLLSH--KGILKIADFGLAREYGSP-LKPYTPLVVTLWYRAPE----LLLGAKTYSTAVDMWSVGCIFA  269 (419)
T ss_pred             eeEecccchhheeecc--CCcEEecccchhhhhcCC-cccCcceEEEeeecCHH----HhcCCcccCcchhhhhHHHHHH
Confidence            9999999999999996  899999999999999765 34456666666555554    3344445667789999998877


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       270 E~l~  273 (419)
T KOG0663|consen  270 ELLT  273 (419)
T ss_pred             HHHh
Confidence            7664

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.46  E-value=1.8e-12  Score=133.37  Aligned_cols=185  Identities=13%  Similarity=0.074  Sum_probs=123.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|+|++|+||+|+.  +|+.|++|.........                                        ...-+
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~----------------------------------------~~~~~   45 (256)
T cd08529           6 NKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNR----------------------------------------REREE   45 (256)
T ss_pred             EEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCH----------------------------------------HHHHH
Confidence            5799999999999998  58999999763210000                                        01123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|.+.+.++.     ++++.-..-+.......+++|||++|.+|.++.... ....+...+...+.+  ..+..+|..
T Consensus        46 ~~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~  120 (256)
T cd08529          46 AIDEARVLAKLD-----SSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSK  120 (256)
T ss_pred             HHHHHHHHHhcC-----CCCeehheeeeccCCEEEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            445555444432     232222221222335679999999999999865432 233444444443322  346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|.||+++.  ++.+++.|||++..+.......      ....+.+.++++++...+..++..|++++...+.
T Consensus       121 ~i~h~dl~~~nili~~--~~~~~l~df~~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  192 (256)
T cd08529         121 KILHRDIKSLNLFLDA--YDNVKIGDLGVAKLLSDNTNFA------NTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLY  192 (256)
T ss_pred             CcccCCCCcceEEEeC--CCCEEEcccccceeccCccchh------hccccCccccCHHHhcCCCCCCccchHHHHHHHH
Confidence            9999999999999986  8899999999998876542211      1123456778888888887788899999987766


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       193 ~l~  195 (256)
T cd08529         193 ECC  195 (256)
T ss_pred             HHH
Confidence            654

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.45  E-value=7.9e-13  Score=143.93  Aligned_cols=180  Identities=16%  Similarity=0.194  Sum_probs=119.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|.+  +|+.||+|+.+......                                   .      .-+
T Consensus        11 ~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~-----------------------------------~------~~~   49 (333)
T cd06650          11 SELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPA-----------------------------------I------RNQ   49 (333)
T ss_pred             ccccCCCCEEEEEEEECCCCcEEEEEEeecccCHH-----------------------------------H------HHH
Confidence            5799999999999999  58999999875432211                                   0      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh-
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS-  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~-  452 (766)
                      +.+|++.+..+.     +++| .+..++. .....+|||||++|++|.++.... ...+...+.....  -..+..+|. 
T Consensus        50 ~~~E~~~l~~l~-----h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~l~~~l~~lH~~  122 (333)
T cd06650          50 IIRELQVLHECN-----SPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVIKGLTYLREK  122 (333)
T ss_pred             HHHHHHHHHHCC-----CCcccceeEEEE-ECCEEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            445555555442     2332 2223332 346789999999999999875322 1233333222222  223566775 


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      +|++|+|+||+||+++.  ++.++|+|||++..+.....        ....+...++++++......+...|++++...+
T Consensus       123 ~~ivH~dlkp~Nili~~--~~~~kL~Dfg~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il  192 (333)
T cd06650         123 HKIMHRDVKPSNILVNS--RGEIKLCDFGVSGQLIDSMA--------NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSL  192 (333)
T ss_pred             CCEEecCCChhhEEEcC--CCCEEEeeCCcchhhhhhcc--------ccCCCCccccCHHHhcCCCCCcHHHHHHHHHHH
Confidence            58999999999999986  78999999999876643221        112356678888888766667778999998877


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       193 ~~l~  196 (333)
T cd06650         193 VEMA  196 (333)
T ss_pred             HHHH
Confidence            6655

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.45  E-value=9.6e-13  Score=137.11  Aligned_cols=185  Identities=16%  Similarity=0.186  Sum_probs=121.0

Q ss_pred             ccccccceeEEEEEeec-----CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-----G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||.|++|.||+|++.     ...||||+.+++....                                         .
T Consensus        10 ~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~-----------------------------------------~   48 (266)
T cd05033          10 KVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDK-----------------------------------------Q   48 (266)
T ss_pred             eEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChH-----------------------------------------H
Confidence            68999999999999982     3579999875542211                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      .-+|..|...+.++.    + +++ .+...+ ......+++|||++|++|.++.......++...+...+.+  ..+..+
T Consensus        49 ~~~~~~e~~~l~~l~----h-~~i~~~~~~~-~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L  122 (266)
T cd05033          49 RLDFLTEASIMGQFD----H-PNIIRLEGVV-TKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYL  122 (266)
T ss_pred             HHHHHHHHHHHHhCC----C-CCcceEeEEE-ecCCceEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            123445555444442    2 222 222222 2345679999999999999875433333455555444333  336788


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|++|.||+++.  ++.++++|||++..+.........    ........+++++....+..++..|++++..
T Consensus       123 h~~~i~H~di~p~nili~~--~~~~~l~dfg~~~~~~~~~~~~~~----~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~  196 (266)
T cd05033         123 SEMNYVHRDLAARNILVNS--NLVCKVSDFGLSRRLEDSEATYTT----KGGKIPIRWTAPEAIAYRKFTSASDVWSFGI  196 (266)
T ss_pred             HhCCcccCCCCcceEEEcC--CCCEEECccchhhcccccccceec----cCCCCCccccChhhhccCCCccccchHHHHH
Confidence            9999999999999999986  889999999999987522111000    0112234577788777677778889999987


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       197 ~l~~l~  202 (266)
T cd05033         197 VMWEVM  202 (266)
T ss_pred             HHHHHH
Confidence            766543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.45  E-value=7.9e-13  Score=138.80  Aligned_cols=186  Identities=16%  Similarity=0.164  Sum_probs=120.1

Q ss_pred             ccccccceeEEEEEeec--C-----eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK--G-----EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~--G-----~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||.|++|.||+|...  +     ..|++|..+......                                   .    
T Consensus        11 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~-----------------------------------~----   51 (283)
T cd05048          11 EELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPK-----------------------------------V----   51 (283)
T ss_pred             hcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHH-----------------------------------H----
Confidence            67999999999999982  3     579999874322111                                   0    


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRK  436 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~~  436 (766)
                        .-+|.+|.+.+.++.     ++++....-+.......+++|||++|++|.++.....               ..++..
T Consensus        52 --~~~~~~ei~~l~~l~-----h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  124 (283)
T cd05048          52 --QQEFRQEAELMSDLQ-----HPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCS  124 (283)
T ss_pred             --HHHHHHHHHHHHhcC-----CcccceEEEEEcCCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHH
Confidence              112444555444432     2332222222233456799999999999988653221               123333


Q ss_pred             HHHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004234          437 RLGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  514 (766)
Q Consensus       437 ~la~~lv--~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~  514 (766)
                      .+...+.  ...+..+|..|++|+|++|.||++++  ++.++|+|||++..+.........    .....+..+++++..
T Consensus       125 ~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~--~~~~~L~dfg~~~~~~~~~~~~~~----~~~~~~~~y~aPE~~  198 (283)
T cd05048         125 DFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGE--GLTVKISDFGLSRDIYSADYYRVQ----SKSLLPVRWMPPEAI  198 (283)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeccccccceEEEcC--CCcEEECCCcceeecccccccccc----CCCcccccccCHHHh
Confidence            3333332  23367889999999999999999986  789999999999876432211100    011224568888888


Q ss_pred             HcCCCCCCCCHHHHHHHHHHHH
Q 004234          515 QMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       515 ~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ..+..++..|++++...+.+++
T Consensus       199 ~~~~~~~~sDv~slG~il~el~  220 (283)
T cd05048         199 LYGKFTTESDIWSFGVVLWEIF  220 (283)
T ss_pred             ccCcCchhhhHHHHHHHHHHHH
Confidence            7777788899999988777665

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.45  E-value=9.6e-13  Score=138.34  Aligned_cols=180  Identities=18%  Similarity=0.183  Sum_probs=120.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||+|++|+||+|..  +|+.||||+.......                                         ...-+
T Consensus        10 ~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~-----------------------------------------~~~~~   48 (277)
T cd06640          10 ERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAE-----------------------------------------DEIED   48 (277)
T ss_pred             hhcccCCCeEEEEEEEccCCEEEEEEEEeccccH-----------------------------------------HHHHH
Confidence            5699999999999998  5899999986311000                                         01123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      +.+|..-+.++    .+ ++  +++++.  ......++||||++|++|.+...  ....+...+...+.+  ..+..+|.
T Consensus        49 ~~~e~~~l~~l----~h-~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~--~~~l~~~~~~~~~~~l~~~l~~lh~  119 (277)
T cd06640          49 IQQEITVLSQC----DS-PY--VTKYYGSYLKGTKLWIIMEYLGGGSALDLLR--AGPFDEFQIATMLKEILKGLDYLHS  119 (277)
T ss_pred             HHHHHHHHHhC----CC-CC--EeeEEEEEEECCEEEEEEecCCCCcHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            44555444433    12 22  333333  23456899999999999988653  223444444443333  23677899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      .|++|+|++|+||+++.  ++.++++|||++..+.......      ....++..++++++...+..+...|++++...+
T Consensus       120 ~~ivH~dl~p~Nil~~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il  191 (277)
T cd06640         120 EKKIHRDIKAANVLLSE--QGDVKLADFGVAGQLTDTQIKR------NTFVGTPFWMAPEVIQQSAYDSKADIWSLGITA  191 (277)
T ss_pred             CCccCcCCChhhEEEcC--CCCEEEcccccceeccCCcccc------ccccCcccccCHhHhccCCCccHHHHHHHHHHH
Confidence            99999999999999985  8899999999998876543211      111244556778877766677788999998777


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       192 ~el~  195 (277)
T cd06640         192 IELA  195 (277)
T ss_pred             HHHH
Confidence            6654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.45  E-value=2.3e-13  Score=155.29  Aligned_cols=186  Identities=17%  Similarity=0.192  Sum_probs=116.0

Q ss_pred             cccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      .+.||.|+||||-+|..  +|+.|||||.+-.-.-                                     ..+   + 
T Consensus       191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f-------------------------------------~~Q---~-  229 (586)
T KOG0667|consen  191 LEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRF-------------------------------------LRQ---A-  229 (586)
T ss_pred             EEEecccccceeEEEEecCCCcEEEEEeeccChHH-------------------------------------HHH---H-
Confidence            36899999999999999  5999999998432110                                     000   0 


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHH--HHHHHHHH
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYA--VESYLEQI  450 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~l--v~~~l~qI  450 (766)
                        ..|.+-++.+.+ ........+-+.|.  .+-+..+||.|.++ ..|.+++.. ...|++...+....  +-..|..+
T Consensus       230 --~~Ei~iL~~ln~-~d~~~~~n~Vrm~d~F~fr~HlciVfELL~-~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L  305 (586)
T KOG0667|consen  230 --QIEIRILELLNK-HDPDDKYNIVRMLDYFYFRNHLCIVFELLS-TNLYELLKNNKFRGLSLPLVRKFAQQILTALLFL  305 (586)
T ss_pred             --HHHHHHHHHHhc-cCCCCCeeEEEeeeccccccceeeeehhhh-hhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence              123334444443 11222334444444  23567799999874 566676433 23345544332222  22346677


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      ++.|++|||+||+|||+.+.....|++||||.+...++..-. |   +.+-..+-    -+.++.+ -.....|+++|.-
T Consensus       306 ~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vyt-Y---iQSRfYRA----PEVILGl-pY~~~IDmWSLGC  376 (586)
T KOG0667|consen  306 HELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVYT-Y---IQSRFYRA----PEVILGL-PYDTAIDMWSLGC  376 (586)
T ss_pred             HhCCeeeccCChhheeeccCCcCceeEEecccccccCCccee-e---eecccccc----chhhccC-CCCCccceeehhh
Confidence            899999999999999998755568999999999988775432 2   12222222    2333333 3456789999998


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.++.-
T Consensus       377 IlAEL~t  383 (586)
T KOG0667|consen  377 ILAELFT  383 (586)
T ss_pred             hHHhHhc
Confidence            8776654

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.45  E-value=8.6e-13  Score=142.58  Aligned_cols=186  Identities=18%  Similarity=0.142  Sum_probs=117.7

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||+|++|.||+|+.  +|+.||||+.++..... .                               ++.       -.+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-~-------------------------------~~~-------~~~   42 (316)
T cd05619           2 MLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLM-D-------------------------------DDV-------ECT   42 (316)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh-c-------------------------------chH-------HHH
Confidence            589999999999998  48899999885432100 0                               000       011


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~Gf  455 (766)
                      ..|...+..   .+ +++++.-..-+.......+++|||++|++|.+.... ....+...+...+  +...+..+|..|+
T Consensus        43 ~~e~~~l~~---~~-~hp~iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~~~~~~qi~~al~~LH~~~i  117 (316)
T cd05619          43 MVEKRVLSL---AW-EHPFLTHLYCTFQTKENLFFVMEYLNGGDLMFHIQS-CHKFDLPRATFYAAEIICGLQFLHSKGI  117 (316)
T ss_pred             HHHHHHHHh---cc-CCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            222222211   11 233332111222334567899999999999876432 1223333333222  2234788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|+||.||+++.  ++.++|+|||++..........      .-..++..++++++......+...|++++...+.++
T Consensus       118 vHrdikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el  189 (316)
T cd05619         118 VYRDLKLDNILLDT--DGHIKIADFGMCKENMLGDAKT------CTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEM  189 (316)
T ss_pred             EeCCCCHHHEEECC--CCCEEEccCCcceECCCCCCce------eeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHH
Confidence            99999999999986  8899999999987532211100      112356778889988776777889999999887766


Q ss_pred             HH
Q 004234          536 LN  537 (766)
Q Consensus       536 l~  537 (766)
                      +.
T Consensus       190 ~~  191 (316)
T cd05619         190 LI  191 (316)
T ss_pred             Hh
Confidence            53

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.45  E-value=1e-12  Score=141.86  Aligned_cols=184  Identities=20%  Similarity=0.149  Sum_probs=118.5

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      -||.|++|.||+|+.  +|+.||||+.+......                            -    ++       .-.+
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~----------------------------~----~~-------~~~~   42 (318)
T cd05570           2 VLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQ----------------------------D----DD-------VECT   42 (318)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhh----------------------------h----hH-------HHHH
Confidence            489999999999999  58899999874321000                            0    00       0012


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      ..|.+.+....    ++++  +++++.  +.....++||||++|++|.+.... ...++...+...+.+  ..+..+|..
T Consensus        43 ~~e~~il~~~~----~h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~-~~~l~~~~~~~~~~qi~~~l~~LH~~  115 (318)
T cd05570          43 MTEKRVLALAG----KHPF--LTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQR-SGRFDEPRARFYAAEIVLGLQFLHER  115 (318)
T ss_pred             HHHHHHHHhcc----CCCC--ccceeeEEEcCCEEEEEEcCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            23333333221    2333  233332  334567999999999999875432 223444444333322  346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|.||+++.  ++.++|+|||++..........      ....+++.++++++...+..+...|++++...+.
T Consensus       116 ~ivH~dlkp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~  187 (318)
T cd05570         116 GIIYRDLKLDNVLLDS--EGHIKIADFGMCKEGILGGVTT------STFCGTPDYIAPEILSYQPYGPAVDWWALGVLLY  187 (318)
T ss_pred             CeEccCCCHHHeEECC--CCcEEecccCCCeecCcCCCcc------cceecCccccCHHHhcCCCCCcchhhhhHHHHHH
Confidence            9999999999999986  8899999999886532211110      1123577888999887777778889999988776


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       188 ~l~~  191 (318)
T cd05570         188 EMLA  191 (318)
T ss_pred             HHhh
Confidence            6653

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.45  E-value=8.7e-13  Score=138.06  Aligned_cols=186  Identities=18%  Similarity=0.183  Sum_probs=121.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|+|++|+||+|..  +|+.|+||+.+......                                  +       .-+
T Consensus         7 ~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~----------------------------------~-------~~~   45 (277)
T cd06917           7 ELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDD----------------------------------D-------VSD   45 (277)
T ss_pred             hheeccCCceEEEEEEcCCCcEEEEEEecCCCCch----------------------------------h-------HHH
Confidence            5799999999999998  58999999875432211                                  0       002


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +.+|...+.++..  ..++++.-+.-+..-.+..+++|||++|++|.++....  .++...+...+  +...+..+|..|
T Consensus        46 ~~~e~~~l~~l~~--~~~~~vi~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~l~~~~~~~i~~~i~~~l~~lh~~~  121 (277)
T cd06917          46 IQREVALLSQLRQ--SQPPNITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKAG--PIAEKYISVIIREVLVALKYIHKVG  121 (277)
T ss_pred             HHHHHHHHHHhcc--CCCCCeeeEeeeeeeCCEEEEEEecCCCCcHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            3344544444432  12333322222223345679999999999999875332  34433333322  233467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~-~~~~~D~~~l~~~i~  533 (766)
                      ++|+|++|.||++++  ++.++++|||.+..+........      ...+...+++++....|. .+...|++++...+.
T Consensus       122 i~H~dl~p~ni~i~~--~~~~~l~dfg~~~~~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~  193 (277)
T cd06917         122 VIHRDIKAANILVTN--TGNVKLCDFGVAALLNQNSSKRS------TFVGTPYWMAPEVITEGKYYDTKADIWSLGITIY  193 (277)
T ss_pred             cccCCcCHHHEEEcC--CCCEEEccCCceeecCCCccccc------cccCCcceeCHHHhccCCccccchhHHHHHHHHH
Confidence            999999999999986  88999999999988765432111      112455667777765554 356789999988777


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       194 ~ll~  197 (277)
T cd06917         194 EMAT  197 (277)
T ss_pred             HHHh
Confidence            6653

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.44  E-value=7.5e-13  Score=137.87  Aligned_cols=187  Identities=16%  Similarity=0.199  Sum_probs=119.2

Q ss_pred             ccccccceeEEEEEee--cCe---eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGE---EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~---~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||.|++|+||+|++  +|+   .|+||..+++....                                         .
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------------~   49 (268)
T cd05063          11 KVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEK-----------------------------------------Q   49 (268)
T ss_pred             eEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHH-----------------------------------------H
Confidence            6899999999999998  343   79999875442211                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      .-+|.+|++.+.++    .+..-+.+...+ ......+++|||++|++|.++........+...+...+.+  ..+..+|
T Consensus        50 ~~~~~~e~~~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH  124 (268)
T cd05063          50 RQDFLSEASIMGQF----SHHNIIRLEGVV-TKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLS  124 (268)
T ss_pred             HHHHHHHHHHHhcC----CCCCeeEEEEEE-ccCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            11344455444333    222222222222 2335679999999999998875433223444444433322  3467889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|+||.||+++.  ++.++++|||+...+..........   ........++++++...+..+...|++++.-.
T Consensus       125 ~~~i~H~dlkp~Nili~~--~~~~kl~dfg~~~~~~~~~~~~~~~---~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~i  199 (268)
T cd05063         125 DMNYVHRDLAARNILVNS--NLECKVSDFGLSRVLEDDPEGTYTT---SGGKIPIRWTAPEAIAYRKFTSASDVWSFGIV  199 (268)
T ss_pred             HCCeeccccchhhEEEcC--CCcEEECCCccceecccccccceec---cCCCcCceecCHHHhhcCCcChHhHHHHHHHH
Confidence            999999999999999985  8899999999998775433222110   00111234677777776666778899998876


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       200 l~ell  204 (268)
T cd05063         200 MWEVM  204 (268)
T ss_pred             HHHHH
Confidence            65543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.44  E-value=3.6e-13  Score=145.08  Aligned_cols=184  Identities=15%  Similarity=0.178  Sum_probs=119.4

Q ss_pred             ccccccceeEEEEEee-----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||.|++|.||+++.     +|+.||||+.+.....                                        ...
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~----------------------------------------~~~   41 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLK----------------------------------------VRD   41 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhh----------------------------------------hhh
Confidence            4689999999999875     4789999987321000                                        001


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQIL  451 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~  451 (766)
                      ...+.+|.+.+.++.     +++|.-..-+.......++||||++|++|.+.... ...++...+...+.  ...+..+|
T Consensus        42 ~~~~~~E~~~l~~l~-----h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~l~~~~~~~~~~qi~~~l~~lH  115 (318)
T cd05582          42 RVRTKMERDILAEVN-----HPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSK-EVMFTEEDVKFYLAELALALDHLH  115 (318)
T ss_pred             HHHHHHHHHHHHhCC-----CCCcccEEEEEEcCCEEEEEEcCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            112344555554442     23332221222334567999999999999876432 22244444333332  23477899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|+||.||+++.  ++.++|+|||++...........      ...+.+.+++++...-...+...|++++...
T Consensus       116 ~~~i~H~dlkp~Nil~~~--~~~~kL~Dfg~~~~~~~~~~~~~------~~~g~~~y~aPE~~~~~~~~~~~DiwslG~i  187 (318)
T cd05582         116 SLGIIYRDLKPENILLDE--EGHIKLTDFGLSKESIDHEKKAY------SFCGTVEYMAPEVVNRRGHTQSADWWSFGVL  187 (318)
T ss_pred             HCCEecCCCCHHHeEECC--CCcEEEeeccCCcccCCCCCcee------cccCChhhcCHHHHcCCCCCCccceeccceE
Confidence            999999999999999986  88999999999876544321111      1235778888988876666777899998876


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       188 l~el~  192 (318)
T cd05582         188 MFEML  192 (318)
T ss_pred             eeeec
Confidence            65544

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.44  E-value=5.4e-13  Score=146.29  Aligned_cols=187  Identities=18%  Similarity=0.181  Sum_probs=125.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|.-|+||+|+.  .++.||||+.                                  |+...-+++       -.
T Consensus        32 e~IG~G~sa~V~~A~c~p~~e~VAIK~i----------------------------------nLEkc~~~l-------d~   70 (516)
T KOG0582|consen   32 EVIGVGASAVVYLARCIPTNEVVAIKII----------------------------------NLEKCNNDL-------DA   70 (516)
T ss_pred             EEEeccceeEeeeeeecccCCEEEEEEe----------------------------------ehhhhhhhH-------HH
Confidence            4699999999999998  6999999987                                  111111111       02


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhh-hhhcCCCHHHHHHHHHHH--HHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQS-LDELGVDRKRLGRYAVES--YLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~-l~~~g~d~~~la~~lv~~--~l~qI~~~  453 (766)
                      .++|..+|..+     ++|+|.--..---.....|+||-||.|+++.++.. .-..|++...++..+-+.  .+.++|.+
T Consensus        71 l~kE~~~msl~-----~HPNIv~~~~sFvv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~  145 (516)
T KOG0582|consen   71 LRKEVQTMSLI-----DHPNIVTYHCSFVVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQN  145 (516)
T ss_pred             HHHHHHHhhhc-----CCCCcceEEEEEEecceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhc
Confidence            35667777665     34444221111123456799999999999999754 334567777776665444  38889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH-H-cCCCCCCCCHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV-Q-MGVLVPTGDTTAVRRT  531 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~-~-lG~~~~~~D~~~l~~~  531 (766)
                      |.+|||+|+||||++.  +|.++|.|||....+-..-.++-.++  ....+.+.+|+++++ + .--..-+.|+++|.-.
T Consensus       146 G~IHRdvKAgnILi~~--dG~VkLadFgvsa~l~~~G~R~~~rf--~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGIT  221 (516)
T KOG0582|consen  146 GHIHRDVKAGNILIDS--DGTVKLADFGVSASLFDSGDRQVTRF--NTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGIT  221 (516)
T ss_pred             CceecccccccEEEcC--CCcEEEcCceeeeeecccCceeeEee--ccccCcccccChHHhhhcccCccchhhhhhhhHH
Confidence            9999999999999996  99999999998877644322221221  334568888888883 2 2122445788887765


Q ss_pred             HHHH
Q 004234          532 AQFF  535 (766)
Q Consensus       532 i~~~  535 (766)
                      +.++
T Consensus       222 A~EL  225 (516)
T KOG0582|consen  222 ACEL  225 (516)
T ss_pred             HHHH
Confidence            5444

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.44  E-value=9.9e-13  Score=137.05  Aligned_cols=184  Identities=13%  Similarity=0.096  Sum_probs=119.6

Q ss_pred             ccccceeEEEEEee----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          301 IAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       301 IgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ||.|++|.||+|++    ++..||||+..+.....                                   ..      -+
T Consensus         3 ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~-----------------------------------~~------~~   41 (257)
T cd05115           3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKS-----------------------------------VR------DE   41 (257)
T ss_pred             cCCCCcccEEEEEEecCCCceeEEEEEcccccChH-----------------------------------HH------HH
Confidence            89999999999987    25679999875432111                                   00      13


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~--~l~qI~~~G  454 (766)
                      |.+|+.-+.++    .+..-+.+..++  .....++||||++|++|.++.......++...+...+.+.  .+..+|..|
T Consensus        42 ~~~E~~~l~~l----~h~~ii~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~  115 (257)
T cd05115          42 MMREAEIMHQL----DNPYIVRMIGVC--EAEALMLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKN  115 (257)
T ss_pred             HHHHHHHHHhc----CCCCeEEEEEEE--cCCCeEEEEEeCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            44455544443    222223333322  1346799999999999998754333345555554444332  367789999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||+||+++.  ++.++++|||++..+.........   .........+++++....+..+...|++++...+.+
T Consensus       116 i~H~dlkp~nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~e  190 (257)
T cd05115         116 FVHRDLAARNVLLVN--QHYAKISDFGLSKALGADDSYYKA---RSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWE  190 (257)
T ss_pred             eeecccchheEEEcC--CCcEEeccCCccccccCCccceec---cCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHH
Confidence            999999999999985  789999999999866543221100   000111345777887777777778899999877665


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       191 l~  192 (257)
T cd05115         191 AF  192 (257)
T ss_pred             Hh
Confidence            44

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.44  E-value=3.4e-13  Score=146.02  Aligned_cols=123  Identities=15%  Similarity=0.145  Sum_probs=84.3

Q ss_pred             ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecc
Q 004234          405 EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGM  482 (766)
Q Consensus       405 e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGl  482 (766)
                      +..+..++||||++|++|.+.... ...++...+...+.+  ..+..+|..|++|+|+||.||+++.  ++.++|+|||+
T Consensus        66 ~~~~~~~lv~e~~~~g~L~~~l~~-~~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~--~~~~kl~Dfg~  142 (330)
T cd05586          66 QTDSDLYLVTDYMSGGELFWHLQK-EGRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDA--TGHIALCDFGL  142 (330)
T ss_pred             ecCCeEEEEEcCCCCChHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECC--CCCEEEecCCc
Confidence            335667999999999998775432 223444444333322  3478899999999999999999986  88999999999


Q ss_pred             eeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHHH
Q 004234          483 MGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       483 v~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~~i~~~l  536 (766)
                      +.........      .....++..+++++...-+ ......|++++...+.+++
T Consensus       143 a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~ell  191 (330)
T cd05586         143 SKANLTDNKT------TNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMC  191 (330)
T ss_pred             CcCCCCCCCC------ccCccCCccccCHHHHcCCCCCCCccceeccccEEEEec
Confidence            8764322111      0112357788888877532 2466789999886655544

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.44  E-value=4.6e-13  Score=137.92  Aligned_cols=185  Identities=18%  Similarity=0.241  Sum_probs=123.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|..  +|+.||+|+....-...                                  ....      .
T Consensus         5 ~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~----------------------------------~~~~------~   44 (260)
T PF00069_consen    5 KKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEE----------------------------------EERE------E   44 (260)
T ss_dssp             EEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHH----------------------------------HHHH------H
T ss_pred             EEEEeCCCEEEEEEEECCCCeEEEEEEeccccccc----------------------------------cccc------h
Confidence            5799999999999999  57899999884332111                                  0000      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      ...|+..+.++.     ++++.-..-+.......+++|||++|.+|.++.. ....++...+...+.+  ..+..+|..|
T Consensus        45 ~~~e~~~~~~l~-----~~~i~~~~~~~~~~~~~~~v~~~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~~L~~Lh~~~  118 (260)
T PF00069_consen   45 NIREIKILRRLR-----HPNIVQILDVFQDDNYLYIVMEYCPGGSLQDYLQ-KNKPLSEEEILKIAYQILEALAYLHSKG  118 (260)
T ss_dssp             HHHHHHHHHHHT-----BTTBCHEEEEEEESSEEEEEEEEETTEBHHHHHH-HHSSBBHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhcccccc-----cccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            112555555552     2333322333333677899999999999988754 2333455544444433  2478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~-lG~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|++|.||+++.  ++.++|+|||.+..++.....      .....++..+.+++... ........|++++...+.
T Consensus       119 i~H~dikp~NIl~~~--~~~~~l~Dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~  190 (260)
T PF00069_consen  119 IVHRDIKPENILLDE--NGEVKLIDFGSSVKLSENNEN------FNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILY  190 (260)
T ss_dssp             EEESSBSGGGEEEST--TSEEEESSGTTTEESTSTTSE------BSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHH
T ss_pred             ccccccccccccccc--ccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc
Confidence            999999999999985  899999999998764211110      11123456677788877 666777789999988776


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       191 ~l~~  194 (260)
T PF00069_consen  191 ELLT  194 (260)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            6553

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.44  E-value=9e-13  Score=136.94  Aligned_cols=183  Identities=15%  Similarity=0.126  Sum_probs=121.7

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||.|++|.||+|.+ +++.||||..+++-..                                           +-+|
T Consensus        12 ~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~-------------------------------------------~~~~   48 (261)
T cd05068          12 RKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMD-------------------------------------------PKDF   48 (261)
T ss_pred             EEecccCCccEEEEEecCCeEEEEEeeCCCccc-------------------------------------------HHHH
Confidence            6899999999999998 6788999987543110                                           1134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHHH--HHHHHHhCC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVES--YLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~~--~l~qI~~~G  454 (766)
                      .+|...+.++.     ++++.-..-+.......+++|||++|++|.++..... ...+...+...+.+.  .+..+|..|
T Consensus        49 ~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~  123 (261)
T cd05068          49 LAEAQIMKKLR-----HPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQN  123 (261)
T ss_pred             HHHHHHHHHCC-----CCCccceeEEEecCCCeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            45555555542     2333222222334556799999999999998753222 234444444443332  367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||+||++++  ++.++++|||++..+........    .+ ......+++++....+..+...|++++...+.+
T Consensus       124 i~H~dl~p~Nil~~~--~~~~~l~dfg~~~~~~~~~~~~~----~~-~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~e  196 (261)
T cd05068         124 YIHRDLAARNVLVGE--NNICKVADFGLARVIKEDIYEAR----EG-AKFPIKWTAPEAALYNRFSIKSDVWSFGILLTE  196 (261)
T ss_pred             eeeccCCcceEEEcC--CCCEEECCcceEEEccCCccccc----CC-CcCceeccCccccccCCCCchhhHHHHHHHHHH
Confidence            999999999999986  88999999999988763321100    00 011235667777766667778899999877766


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       197 l~  198 (261)
T cd05068         197 IV  198 (261)
T ss_pred             HH
Confidence            54

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.44  E-value=6.4e-13  Score=142.87  Aligned_cols=184  Identities=14%  Similarity=0.097  Sum_probs=118.9

Q ss_pred             ccccccceeEEEEEee--cCe----eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~----~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.||+|++|+||+|++  +|+    .||||+.++.....                                         
T Consensus        13 ~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------   51 (316)
T cd05108          13 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK-----------------------------------------   51 (316)
T ss_pred             eeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHH-----------------------------------------
Confidence            6899999999999997  344    48999874321111                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeee-ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~-e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                      ..-++..|+..+..+     +++++  .+.+. ......+++|||++++++.+........++...+.....+  ..+..
T Consensus        52 ~~~~~~~e~~~l~~l-----~h~ni--v~~~g~~~~~~~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~  124 (316)
T cd05108          52 ANKEILDEAYVMASV-----DNPHV--CRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNY  124 (316)
T ss_pred             HHHHHHHHHHHHHhC-----CCCCC--CeEEEEEcCCCceeeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHH
Confidence            011344455444433     22333  22222 1235578999999999998865433333444444443333  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|+|+||.||+++.  ++.++|+|||++..+.........    ........++++++...+..+...|++++.
T Consensus       125 LH~~~iiH~dlkp~Nill~~--~~~~kl~DfG~a~~~~~~~~~~~~----~~~~~~~~y~apE~~~~~~~~~~~Di~slG  198 (316)
T cd05108         125 LEERRLVHRDLAARNVLVKT--PQHVKITDFGLAKLLGADEKEYHA----EGGKVPIKWMALESILHRIYTHQSDVWSYG  198 (316)
T ss_pred             HHhcCeeccccchhheEecC--CCcEEEccccccccccCCCcceec----cCCccceeecChHHhccCCCCchhhhHHHH
Confidence            99999999999999999985  789999999999887643321100    000112356777777767777888999998


Q ss_pred             HHHHHHH
Q 004234          530 RTAQFFL  536 (766)
Q Consensus       530 ~~i~~~l  536 (766)
                      ..+.+++
T Consensus       199 v~l~el~  205 (316)
T cd05108         199 VTVWELM  205 (316)
T ss_pred             HHHHHHH
Confidence            7776654

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.44  E-value=1e-12  Score=135.27  Aligned_cols=187  Identities=20%  Similarity=0.202  Sum_probs=121.2

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||.|++|.||+|.+ +|+.|++|..+.....                                   +.      .-.+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~-----------------------------------~~------~~~~   39 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPP-----------------------------------DL------KRKF   39 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCH-----------------------------------HH------HHHH
Confidence            3689999999999999 5999999976432111                                   00      1134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      .+|.+.+..+     +++++.....+.......+++|||++|.+|.++........+...+.....+  ..+..+|..|+
T Consensus        40 ~~e~~~l~~l-----~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i  114 (251)
T cd05041          40 LQEAEILKQY-----DHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNC  114 (251)
T ss_pred             HHHHHHHHhC-----CCCCeEEEEEEEecCCCeEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            4444444333     2333332222333456689999999999998875433333444444443333  33678899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|++|.||+++.  ++.++|+|||++......... ..   .........++.++....+..+...|++++...+.++
T Consensus       115 ~h~di~p~nili~~--~~~~~l~d~g~~~~~~~~~~~-~~---~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l  188 (251)
T cd05041         115 IHRDLAARNCLVGE--NNVLKISDFGMSREEEGGIYT-VS---DGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWET  188 (251)
T ss_pred             ehhhcCcceEEEcC--CCcEEEeeccccccccCCcce-ec---cccCcceeccCChHhhccCCCCcchhHHHHHHHHHHH
Confidence            99999999999986  889999999999866422100 00   0001112346777777777777888999998877665


Q ss_pred             HH
Q 004234          536 LN  537 (766)
Q Consensus       536 l~  537 (766)
                      +.
T Consensus       189 ~t  190 (251)
T cd05041         189 FS  190 (251)
T ss_pred             Hh
Confidence            53

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.43  E-value=1e-12  Score=143.71  Aligned_cols=195  Identities=17%  Similarity=0.180  Sum_probs=119.7

Q ss_pred             CCChhhhhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHH
Q 004234          286 GAPLDDVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (766)
Q Consensus       286 G~~~eeiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~  362 (766)
                      |...-.++..|.. +.||.|++|.||+|..  .|+.||||+........                               
T Consensus         9 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-------------------------------   57 (355)
T cd07874           9 GDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQ-------------------------------   57 (355)
T ss_pred             CchhhhhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccCh-------------------------------
Confidence            3333345555543 7899999999999998  58999999874322111                               


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee-----ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHH
Q 004234          363 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKR  437 (766)
Q Consensus       363 i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~-----e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~  437 (766)
                         ....      ++.+|...+..+    .+..-+.+..++.     +.....+++|||++|.. .+...   ...+...
T Consensus        58 ---~~~~------~~~~E~~~l~~l----~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l-~~~~~---~~l~~~~  120 (355)
T cd07874          58 ---THAK------RAYRELVLMKCV----NHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANL-CQVIQ---MELDHER  120 (355)
T ss_pred             ---HHHH------HHHHHHHHHHHh----CCCchhceeeeeeccccccccceeEEEhhhhcccH-HHHHh---hcCCHHH
Confidence               0001      122233323222    1211122222221     11234689999999853 33221   1234333


Q ss_pred             HHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004234          438 LGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (766)
Q Consensus       438 la~~lv--~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~  515 (766)
                      +...+.  -..+..+|..|++|+|+||+||+++.  ++.++|+|||++.........       ....++..++++++..
T Consensus       121 ~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~-------~~~~~t~~y~aPE~~~  191 (355)
T cd07874         121 MSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMM-------TPYVVTRYYRAPEVIL  191 (355)
T ss_pred             HHHHHHHHHHHHHHHHhCCcccCCCChHHEEECC--CCCEEEeeCcccccCCCcccc-------CCccccCCccCHHHHc
Confidence            333222  23478899999999999999999986  889999999999876543211       1123456678888876


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHH
Q 004234          516 MGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       516 lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      .....+..|++++...+.+++.
T Consensus       192 ~~~~~~~~DiwslG~il~el~~  213 (355)
T cd07874         192 GMGYKENVDIWSVGCIMGEMVR  213 (355)
T ss_pred             CCCCCchhhHHHHHHHHHHHHh
Confidence            6566778899999987776653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.43  E-value=7.7e-13  Score=138.47  Aligned_cols=186  Identities=17%  Similarity=0.121  Sum_probs=120.8

Q ss_pred             ccccccceeEEEEEee-c------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-K------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||.|++|.||+|+. +      ++.||||+.+.....                                   +     
T Consensus        11 ~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~-----------------------------------~-----   50 (280)
T cd05049          11 RELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASN-----------------------------------D-----   50 (280)
T ss_pred             hhccccCCceEeeeeeccccCcCCcceEEEEeecccCCH-----------------------------------H-----
Confidence            5799999999999987 2      378999986322111                                   0     


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-------------cCCCHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-------------LGVDRKRL  438 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-------------~g~d~~~l  438 (766)
                       .+-+|.+|++.+.++.     ++++.-..-+.......+++|||++|++|.++.....             ..+....+
T Consensus        51 -~~~~~~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~  124 (280)
T cd05049          51 -ARKDFEREAELLTNFQ-----HENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQL  124 (280)
T ss_pred             -HHHHHHHHHHHHHhcC-----CCCchheeeEEecCCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHH
Confidence             1124556666665552     2333222223334567899999999999998653211             11222222


Q ss_pred             HHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004234          439 GRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (766)
Q Consensus       439 a~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l  516 (766)
                      ...+.+  ..+..+|..|++|+|++|+||+++.  ++.++|+|||++..+........    .........++++++...
T Consensus       125 ~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~--~~~~kl~d~g~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~  198 (280)
T cd05049         125 LQIAVQIASGMVYLASQHFVHRDLATRNCLVGY--DLVVKIGDFGMSRDVYTTDYYRV----GGHTMLPIRWMPPESIMY  198 (280)
T ss_pred             HHHHHHHHHHHHHHhhCCeeccccccceEEEcC--CCeEEECCcccceecccCcceec----CCCCcccceecChhhhcc
Confidence            222222  3367889999999999999999986  89999999999876533211000    001112456788888888


Q ss_pred             CCCCCCCCHHHHHHHHHHHH
Q 004234          517 GVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       517 G~~~~~~D~~~l~~~i~~~l  536 (766)
                      +..++..|++++...+.+++
T Consensus       199 ~~~~~~~Di~slG~il~e~~  218 (280)
T cd05049         199 RKFTTESDVWSFGVVLWEIF  218 (280)
T ss_pred             CCcchhhhHHHHHHHHHHHH
Confidence            88888899999987776655

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.43  E-value=1.3e-12  Score=134.93  Aligned_cols=186  Identities=18%  Similarity=0.195  Sum_probs=120.8

Q ss_pred             ccccccceeEEEEEee-c--C--eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-K--G--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~--G--~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|++|.||+|.+ +  |  ..||||+.+++...                                   +      .
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~-----------------------------------~------~   39 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS-----------------------------------D------I   39 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccH-----------------------------------H------H
Confidence            3689999999999998 2  3  36999988554321                                   0      0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~--~~l~qI  450 (766)
                      .-+|.+|.+.+.++.    +..-+.+...+..  ...+++|||++|++|.+...... ...+...+...+.+  ..+..+
T Consensus        40 ~~~~~~e~~~l~~l~----h~~iv~~~~~~~~--~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~l  113 (257)
T cd05040          40 MDDFLKEAAIMHSLD----HENLIRLYGVVLT--HPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYL  113 (257)
T ss_pred             HHHHHHHHHHHhhcC----CCCccceeEEEcC--CeEEEEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHH
Confidence            113344444444442    2222333333333  67799999999999998653322 22344444333322  346788


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|+||.||+++.  ++.++++|||++..+..........   ........++.++.......+...|++++..
T Consensus       114 H~~~i~H~di~p~nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~~---~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~  188 (257)
T cd05040         114 ESKRFIHRDLAARNILLAS--DDKVKIGDFGLMRALPQNEDHYVME---EHLKVPFAWCAPESLRTRTFSHASDVWMFGV  188 (257)
T ss_pred             HhCCccccccCcccEEEec--CCEEEeccccccccccccccceecc---cCCCCCceecCHHHhcccCcCchhhhHHHHH
Confidence            9999999999999999986  7999999999998875532211000   0122345678888877667777889999987


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       189 ~l~el~  194 (257)
T cd05040         189 TLWEMF  194 (257)
T ss_pred             HHHHHH
Confidence            766554

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.43  E-value=2e-13  Score=146.62  Aligned_cols=192  Identities=18%  Similarity=0.197  Sum_probs=115.5

Q ss_pred             cccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      .+|||.|++|.|+.|..  +|+.||||-.                  .+.++.                .-..+...+|+
T Consensus        27 ~~~iG~GAyGvVcsA~~~~t~~~VAIKKi------------------~~~F~~----------------~~~akRtlREl   72 (359)
T KOG0660|consen   27 IEPIGRGAYGVVCSAKDKRTGEKVAIKKI------------------LNPFEN----------------QIDAKRTLREL   72 (359)
T ss_pred             cccccCcceeeEEEEEEcCCCCEeehhhh------------------hhhhhc----------------hHHHHHHHHHH
Confidence            48999999999999999  6999999944                  111110                00123334454


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHH--HHHHHHHHHHHHHHhC
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR--LGRYAVESYLEQILSH  453 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~--la~~lv~~~l~qI~~~  453 (766)
                      -+.+..+     .+|+.....|..|....+ -...++|+|++ +..|..+....+. +....  ..-.-+-..++.+|..
T Consensus        73 klLr~~~-----HeNIi~l~di~~p~~~~~-f~DvYiV~elM-etDL~~iik~~~~-L~d~H~q~f~YQiLrgLKyiHSA  144 (359)
T KOG0660|consen   73 KLLRHLR-----HENIIGLLDIFRPPSRDK-FNDVYLVFELM-ETDLHQIIKSQQD-LTDDHAQYFLYQILRGLKYIHSA  144 (359)
T ss_pred             HHHHHhc-----CCCcceEEeecccccccc-cceeEEehhHH-hhHHHHHHHcCcc-ccHHHHHHHHHHHHHhcchhhcc
Confidence            4433322     112222223444422222 24579999999 4566665432220 22222  2222222336778899


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG-LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~-l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      |++|||+||+|++++.  +..++++|||+++.+++..... +.+.+..-.-+.    .+.+..+.-.+...|++++.-.+
T Consensus       145 nViHRDLKPsNll~n~--~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRA----PElll~~~~Yt~aiDiWSvGCI~  218 (359)
T KOG0660|consen  145 NVIHRDLKPSNLLLNA--DCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRA----PELLLNSSEYTKAIDIWSVGCIL  218 (359)
T ss_pred             cccccccchhheeecc--CCCEEeccccceeeccccCcccchhcceeeeeecC----HHHHhccccccchhhhhhhhHHH
Confidence            9999999999999986  8899999999999997531111 122222212233    34445556667888999999888


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       219 AEmL~  223 (359)
T KOG0660|consen  219 AEMLT  223 (359)
T ss_pred             HHHHc
Confidence            77764

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.43  E-value=9.7e-13  Score=138.53  Aligned_cols=184  Identities=15%  Similarity=0.141  Sum_probs=118.5

Q ss_pred             ccccccceeEEEEEee------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.||.|++|+||+|++      .+..|++|..++.....                                         
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------------   49 (283)
T cd05090          11 EELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQ-----------------------------------------   49 (283)
T ss_pred             eeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHH-----------------------------------------
Confidence            6799999999999985      35789999774321100                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhc----------------CCC
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL----------------GVD  434 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~----------------g~d  434 (766)
                      ..-+|.+|+..+.++.     +++  +++++.  ......+++|||++|++|.++......                .++
T Consensus        50 ~~~~~~~E~~~l~~l~-----h~n--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~  122 (283)
T cd05090          50 QWGEFQQEASLMAELH-----HPN--IVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLD  122 (283)
T ss_pred             HHHHHHHHHHHHhhCC-----CCC--eeeEEEEEecCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccC
Confidence            0113445555444442     233  233332  234567999999999999886532211                122


Q ss_pred             HHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004234          435 RKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  512 (766)
Q Consensus       435 ~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~  512 (766)
                      ...+...+.+  ..+..+|..|++|+|++|.||++++  ++.+++.|||++..+........    ......+..+++++
T Consensus       123 ~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE  196 (283)
T cd05090         123 HGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGE--QLHVKISDLGLSREIYSADYYRV----QPKSLLPIRWMPPE  196 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcC--CCcEEeccccccccccCCcceec----ccCCCccceecChH
Confidence            3333222222  3478899999999999999999986  78899999999987644321110    01112244577888


Q ss_pred             HHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          513 MVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       513 l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ...-+..++..|++++...+.+++
T Consensus       197 ~~~~~~~~~~~Dv~slG~il~el~  220 (283)
T cd05090         197 AIMYGKFSSDSDIWSFGVVLWEIF  220 (283)
T ss_pred             HhccCCCCchhhhHHHHHHHHHHH
Confidence            777677788899999988776655

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.43  E-value=9.3e-13  Score=159.21  Aligned_cols=192  Identities=18%  Similarity=0.132  Sum_probs=123.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                 ...      .-+
T Consensus         8 ~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~---------------------------------e~~------~~r   48 (932)
T PRK13184          8 RLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSEN---------------------------------PLL------KKR   48 (932)
T ss_pred             EEEecCCCEEEEEEEECCCCcEEEEEEECcccccC---------------------------------HHH------HHH
Confidence            6799999999999998  58999999885432211                                 000      113


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhh--h--------cCCCHHHHHHHH--H
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLD--E--------LGVDRKRLGRYA--V  443 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~--~--------~g~d~~~la~~l--v  443 (766)
                      |.+|++.+.++.     ++++ .+..++ ......+++|||++|++|.++....  .        ...+...+...+  +
T Consensus        49 flrEi~ILs~L~-----HPNIVkl~~v~-~d~~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QI  122 (932)
T PRK13184         49 FLREAKIAADLI-----HPGIVPVYSIC-SDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKI  122 (932)
T ss_pred             HHHHHHHHHhCC-----CcCcCeEEEEE-eeCCEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHH
Confidence            455655554442     2332 222222 2345679999999999998865321  0        111122222222  2


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHH-----------HHH-HHHHhhcCHHHHHH
Q 004234          444 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL-----------LEA-FYGIYEKDADKVLQ  511 (766)
Q Consensus       444 ~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l-----------~~l-~~a~~~~D~~~v~~  511 (766)
                      ...+..+|..|++|+|+||+||+++.  +|.++++|||++..+........           ... ..+-..+++.+++|
T Consensus       123 a~AL~yLHs~GIIHRDLKPeNILLd~--dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAP  200 (932)
T PRK13184        123 CATIEYVHSKGVLHRDLKPDNILLGL--FGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAP  200 (932)
T ss_pred             HHHHHHHHHCCccccCCchheEEEcC--CCCEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCH
Confidence            23477889999999999999999986  88999999999987732111000           000 00112367888999


Q ss_pred             HHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          512 AMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       512 ~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      +...-+..+...|++++...+.+++.
T Consensus       201 E~l~g~~~S~kSDIWSLGVILyELLT  226 (932)
T PRK13184        201 ERLLGVPASESTDIYALGVILYQMLT  226 (932)
T ss_pred             HHhcCCCCCcHhHHHHHHHHHHHHHH
Confidence            98877777778899999988877664

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.43  E-value=1.2e-12  Score=137.43  Aligned_cols=185  Identities=15%  Similarity=0.084  Sum_probs=118.0

Q ss_pred             ccccccceeEEEEEee--cCe----eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~----~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.||.|++|.||+|++  +|+    +||||+.+......                                         
T Consensus        13 ~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~-----------------------------------------   51 (279)
T cd05109          13 KVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPK-----------------------------------------   51 (279)
T ss_pred             eecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHH-----------------------------------------
Confidence            6899999999999997  455    58999874322111                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      .+-++.+|...+..+     +++++....-+ ......+++|||++++++.+........+....+...+.+  ..+..+
T Consensus        52 ~~~~~~~e~~~l~~~-----~~~~i~~~~~~-~~~~~~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~l  125 (279)
T cd05109          52 ANKEILDEAYVMAGV-----GSPYVCRLLGI-CLTSTVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYL  125 (279)
T ss_pred             HHHHHHHHHHHHHhc-----CCCCCceEEEE-EcCCCcEEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            011234444444333     22333222212 2245578999999999998865432223444444443333  347788


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|+||+||++.+  ++.++|+|||++..++........    .-......++.++....+..+...|++++.-
T Consensus       126 H~~~iiH~dlkp~Nil~~~--~~~~kL~dfG~~~~~~~~~~~~~~----~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~  199 (279)
T cd05109         126 EEVRLVHRDLAARNVLVKS--PNHVKITDFGLARLLDIDETEYHA----DGGKVPIKWMALESILHRRFTHQSDVWSYGV  199 (279)
T ss_pred             HHCCeeccccccceEEEcC--CCcEEECCCCceeecccccceeec----CCCccchhhCCHHHhccCCCCchhHHHHHHH
Confidence            9999999999999999975  789999999999877543221000    0011234577777776666677789999987


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       200 ~l~el~  205 (279)
T cd05109         200 TVWELM  205 (279)
T ss_pred             HHHHHH
Confidence            766554

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.43  E-value=2.1e-12  Score=133.45  Aligned_cols=183  Identities=14%  Similarity=0.085  Sum_probs=119.8

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|++|+||+|.+ +++.+|||+.+.+...                                           +-+|
T Consensus        10 ~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~-------------------------------------------~~~~   46 (256)
T cd05112          10 QEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMS-------------------------------------------EEDF   46 (256)
T ss_pred             eeecCcccceEEEEEEeCCCeEEEEECCCCCCC-------------------------------------------HHHH
Confidence            6799999999999998 5889999987433210                                           1134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      ..|.+.+.++.     ++++.-..-+....+..+++|||++|+.|.++............+.....+  ..+..+|..|+
T Consensus        47 ~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i  121 (256)
T cd05112          47 IEEAQVMMKLS-----HPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNV  121 (256)
T ss_pred             HHHHHHHHhCC-----CCCeeeEEEEEccCCceEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            45555555542     232221111223346789999999999998865432222344443333322  33677899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|++|+||+++.  ++.++++|||++..+.......     .........++++++...+..+...|++++...+.++
T Consensus       122 ~h~dl~p~ni~i~~--~~~~~l~d~g~~~~~~~~~~~~-----~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el  194 (256)
T cd05112         122 IHRDLAARNCLVGE--NQVVKVSDFGMTRFVLDDQYTS-----STGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEV  194 (256)
T ss_pred             cccccccceEEEcC--CCeEEECCCcceeecccCcccc-----cCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHH
Confidence            99999999999985  7899999999988764331100     0001123456778877767777778999988766654


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       195 ~  195 (256)
T cd05112         195 F  195 (256)
T ss_pred             H
Confidence            4

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.43  E-value=1.7e-12  Score=134.51  Aligned_cols=183  Identities=14%  Similarity=0.102  Sum_probs=119.4

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||.|++|.||+|++ ++..||+|..+.+-.                                           .+-+|
T Consensus        10 ~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~-------------------------------------------~~~~~   46 (256)
T cd05114          10 KELGSGQFGVVHLGKWRAQIKVAIKAINEGAM-------------------------------------------SEEDF   46 (256)
T ss_pred             eEecCCcCceEEEEEeccCceEEEEecccCCc-------------------------------------------cHHHH
Confidence            5699999999999999 577899997632210                                           01244


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      .+|+.-+.++.     ++++.-..-+.......+++|||++|++|.+.........+...+...+.+  ..+..+|..|+
T Consensus        47 ~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  121 (256)
T cd05114          47 IEEAKVMMKLS-----HPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSF  121 (256)
T ss_pred             HHHHHHHHHCC-----CCCceeEEEEEccCCCEEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            55555555442     233322222233455679999999999998865432223444443333322  34678899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|++|+||+++.  ++.+++.|||.+..+.......-     ........+++++.......+...|++++...+.++
T Consensus       122 ~H~dl~p~ni~i~~--~~~~kl~d~g~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el  194 (256)
T cd05114         122 IHRDLAARNCLVSS--TGVVKVSDFGMTRYVLDDEYTSS-----SGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEV  194 (256)
T ss_pred             cccccCcceEEEcC--CCeEEECCCCCccccCCCceecc-----CCCCCchhhCChhhcccCccchhhhhHHHHHHHHHH
Confidence            99999999999985  78999999999887643221100     001123457777777665566778999988776655


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       195 ~  195 (256)
T cd05114         195 F  195 (256)
T ss_pred             H
Confidence            4

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.42  E-value=8.4e-13  Score=141.32  Aligned_cols=183  Identities=13%  Similarity=0.075  Sum_probs=113.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +++.||||+.+......                                         .+..
T Consensus        12 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------~~~~   50 (309)
T cd07872          12 EKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEG-----------------------------------------APCT   50 (309)
T ss_pred             EEecccCCEEEEEEEecCCCCeEEEEEeeccccCC-----------------------------------------cchh
Confidence            6799999999999998  58899999874322111                                         0012


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~  453 (766)
                      +.+|...+.++.    + +++ .+-..+ ......++||||+++ .+.+.........+...+....  +-..+..+|..
T Consensus        51 ~~~E~~~l~~l~----h-~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~  123 (309)
T cd07872          51 AIREVSLLKDLK----H-ANIVTLHDIV-HTDKSLTLVFEYLDK-DLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRR  123 (309)
T ss_pred             HHHHHHHHHhCC----C-CCcceEEEEE-eeCCeEEEEEeCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            233444444432    2 332 222222 334568999999997 5555432222223333333222  22347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i  532 (766)
                      |++|+|+||+||+++.  ++.++|+|||++..........      ........+++++.... +..+...|++++...+
T Consensus       124 ~ivH~dlkp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il  195 (309)
T cd07872         124 KVLHRDLKPQNLLINE--RGELKLADFGLARAKSVPTKTY------SNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIF  195 (309)
T ss_pred             CeecCCCCHHHEEECC--CCCEEECccccceecCCCcccc------ccccccccccCCHHHhCCCCCCcHHHHHHHHHHH
Confidence            9999999999999986  8899999999987654322110      00122455667776543 3345667999988777


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       196 ~el~t  200 (309)
T cd07872         196 FEMAS  200 (309)
T ss_pred             HHHHh
Confidence            66553

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.42  E-value=2.3e-12  Score=134.53  Aligned_cols=201  Identities=16%  Similarity=0.069  Sum_probs=121.4

Q ss_pred             hhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004234          293 FERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (766)
Q Consensus       293 F~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (766)
                      |.++..+++|+|++|+||+|..  +|+.||||..+........                          ......+..+ 
T Consensus         1 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~--------------------------~~~~~~~~~~-   53 (272)
T cd06629           1 FKWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGR--------------------------HDSRQKDMVK-   53 (272)
T ss_pred             CceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcc--------------------------cchHHHHHHH-
Confidence            4556678999999999999987  6999999976432111100                          0000011111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHH
Q 004234          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLE  448 (766)
Q Consensus       371 l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~--lv~~~l~  448 (766)
                           .+..|+..+..+    . ++++.-..-+.+.....++||||++|++|.+..... ..++...+...  -+-..+.
T Consensus        54 -----~~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~  122 (272)
T cd06629          54 -----ALRSEIETLKDL----D-HLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTY-GRFEEQLVRFFTEQVLEGLA  122 (272)
T ss_pred             -----HHHHHHHHHHhc----C-CCCcceEEEEeccCCceEEEEecCCCCcHHHHHhhc-cCCCHHHHHHHHHHHHHHHH
Confidence                 233444444433    1 233221112223346679999999999998865322 22333332222  1223467


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC--CCCCCCHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV--LVPTGDTT  526 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~--~~~~~D~~  526 (766)
                      .+|..|++|+|++|+||+++.  ++.++++|||+...........    ......+...+++++......  .+...|++
T Consensus       123 ~lH~~~i~H~dl~~~nil~~~--~~~~~l~d~~~~~~~~~~~~~~----~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~  196 (272)
T cd06629         123 YLHSKGILHRDLKADNLLVDA--DGICKISDFGISKKSDDIYDND----QNMSMQGSVFWMAPEVIHSYSQGYSAKVDIW  196 (272)
T ss_pred             HHhhCCeeecCCChhhEEEcC--CCeEEEeecccccccccccccc----ccccccCCccccCHHHhccccCCCCccchhH
Confidence            889999999999999999985  8899999999987654321110    011123455666777765443  56678999


Q ss_pred             HHHHHHHHHHH
Q 004234          527 AVRRTAQFFLN  537 (766)
Q Consensus       527 ~l~~~i~~~l~  537 (766)
                      ++...+.+++.
T Consensus       197 slG~~l~~l~~  207 (272)
T cd06629         197 SLGCVVLEMFA  207 (272)
T ss_pred             HHHHHHHHHHh
Confidence            99877665543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.42  E-value=2e-13  Score=162.44  Aligned_cols=120  Identities=20%  Similarity=0.257  Sum_probs=89.5

Q ss_pred             CCeEEEEeecCCCChhhhhhhhhcC-CCH--HHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004234          408 TPQILTMEYVPGIKINRIQSLDELG-VDR--KRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (766)
Q Consensus       408 t~~vLVMEyieG~~L~d~~~l~~~g-~d~--~~la~~lv~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (766)
                      ...||||||++|+.|-.+..  ..+ ++.  .+.-..-+-..+..+|..|++|||+||.|||++.  .|+|+|.|||.+-
T Consensus       148 ~~LYlVMdY~pGGDlltLlS--k~~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~--~GHikLADFGsCl  223 (1317)
T KOG0612|consen  148 RYLYLVMDYMPGGDLLTLLS--KFDRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDK--SGHIKLADFGSCL  223 (1317)
T ss_pred             cceEEEEecccCchHHHHHh--hcCCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecc--cCcEeeccchhHH
Confidence            34689999999999887643  222 222  2222222334578899999999999999999986  8999999999998


Q ss_pred             ccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHHH
Q 004234          485 SISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       485 ~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-----G~~~~~~D~~~l~~~i~~~l  536 (766)
                      .++.+-.-     -..+.-|+|+|+.|++++.     |...+..|-+++...+++++
T Consensus       224 km~~dG~V-----~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMl  275 (1317)
T KOG0612|consen  224 KMDADGTV-----RSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEML  275 (1317)
T ss_pred             hcCCCCcE-----EeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHH
Confidence            88743211     1233458999999998873     56678889999999888877

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.42  E-value=2.1e-12  Score=135.82  Aligned_cols=189  Identities=17%  Similarity=0.205  Sum_probs=122.7

Q ss_pred             hhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHH
Q 004234          289 LDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (766)
Q Consensus       289 ~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E  366 (766)
                      ++++|....  .||+|++|.||+|..  +|+.||||+.......                                    
T Consensus         2 ~~~~~~~~~--~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~------------------------------------   43 (277)
T cd06641           2 PEELFTKLE--KIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE------------------------------------   43 (277)
T ss_pred             HHHhhhhhe--eEeecCCeEEEEEEECCCCcEEEEEEeccccch------------------------------------
Confidence            345555443  699999999999987  5899999976211000                                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH-
Q 004234          367 CASVLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE-  444 (766)
Q Consensus       367 ~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~-  444 (766)
                           ...-++.+|...+.++.     ++++ .+...+ ......++||||++|+++.++..  ....+...+...+.+ 
T Consensus        44 -----~~~~~~~~e~~~l~~l~-----h~~iv~~~~~~-~~~~~~~lv~e~~~~~~l~~~i~--~~~~~~~~~~~~~~~l  110 (277)
T cd06641          44 -----DEIEDIQQEITVLSQCD-----SPYVTKYYGSY-LKDTKLWIIMEYLGGGSALDLLE--PGPLDETQIATILREI  110 (277)
T ss_pred             -----HHHHHHHHHHHHHHhcC-----CCCEeEEEEEE-EeCCeEEEEEEeCCCCcHHHHHh--cCCCCHHHHHHHHHHH
Confidence                 00123455555554432     2332 222222 33466899999999999988643  223455544443333 


Q ss_pred             -HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004234          445 -SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG  523 (766)
Q Consensus       445 -~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~  523 (766)
                       ..+..+|..|++|+|++|+||+++.  ++.++++|||++..+.......      ....++..++.++....+...+..
T Consensus       111 ~~~l~~lh~~~i~h~dl~p~Ni~i~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~  182 (277)
T cd06641         111 LKGLDYLHSEKKIHRDIKAANVLLSE--HGEVKLADFGVAGQLTDTQIKR------NTFVGTPFWMAPEVIKQSAYDSKA  182 (277)
T ss_pred             HHHHHHHccCCeecCCCCHHhEEECC--CCCEEEeecccceecccchhhh------ccccCCccccChhhhccCCCCchh
Confidence             2367789999999999999999985  7899999999988776532111      112234556777777666667778


Q ss_pred             CHHHHHHHHHHHH
Q 004234          524 DTTAVRRTAQFFL  536 (766)
Q Consensus       524 D~~~l~~~i~~~l  536 (766)
                      |++++...+.+++
T Consensus       183 Dv~slG~~l~~l~  195 (277)
T cd06641         183 DIWSLGITAIELA  195 (277)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999887665543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.42  E-value=1.1e-12  Score=140.85  Aligned_cols=185  Identities=17%  Similarity=0.265  Sum_probs=114.6

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      -+|.|++|.||+|+.  +|+.||+|.++-.-.+.                 -.|                 .+..+|+.+
T Consensus        18 klGeGtyg~Vykar~~~~g~~VALKkirl~~~~E-----------------G~P-----------------~taiREisl   63 (323)
T KOG0594|consen   18 KLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEE-----------------GVP-----------------STAIREISL   63 (323)
T ss_pred             HhCCCCceEEEEEEEecCCCEEEEEEEecccccc-----------------CCC-----------------chhhHHHHH
Confidence            499999999999998  69999999985432211                 011                 123345444


Q ss_pred             HHHHHHHHHHHHhcCCCC-ccccceeeeccC-----CCeEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHHHH--HH
Q 004234          378 TQEAANAELFASNFKDMD-YVKVPTIFWEYT-----TPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYAVE--SY  446 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~-~V~vP~v~~e~s-----t~~vLVMEyieG~~L~d~~~l~~---~g~d~~~la~~lv~--~~  446 (766)
                      .++.+          +.. -|..-.++...+     +..+||+||++- +|.++.....   .+.+...+-..+.+  ..
T Consensus        64 lk~L~----------~~~~iv~L~dv~~~~~~~~~~~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~g  132 (323)
T KOG0594|consen   64 LKRLS----------HANHIVRLHDVIHTSNNHRGIGKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRG  132 (323)
T ss_pred             HHHhC----------CCcceEEEEeeeeecccccccceEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHH
Confidence            44433          222 234444444333     256899999984 4555433222   35555322222222  22


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004234          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (766)
Q Consensus       447 l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~  526 (766)
                      +..+|.+|++|||+||.||+|++  +|.++|+|||+++.++-..+. +..-+..+..+-++-    ++..-..++..|++
T Consensus       133 l~~~H~~~IlHRDLKPQNlLi~~--~G~lKlaDFGlAra~~ip~~~-yt~evvTlWYRaPEv----LlGs~~Ys~~vDiW  205 (323)
T KOG0594|consen  133 LAFLHSHGILHRDLKPQNLLISS--SGVLKLADFGLARAFSIPMRT-YTPEVVTLWYRAPEV----LLGSTSYSTSVDIW  205 (323)
T ss_pred             HHHHHhCCeecccCCcceEEECC--CCcEeeeccchHHHhcCCccc-ccccEEEeeccCHHH----hcCCCcCCCCcchH
Confidence            66788999999999999999996  999999999999977744443 222223333333333    33333467788999


Q ss_pred             HHHHHHHHHH
Q 004234          527 AVRRTAQFFL  536 (766)
Q Consensus       527 ~l~~~i~~~l  536 (766)
                      ++.-.+.+++
T Consensus       206 s~GcIfaEm~  215 (323)
T KOG0594|consen  206 SLGCIFAEMF  215 (323)
T ss_pred             hHHHHHHHHH
Confidence            9987766554

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.42  E-value=1.9e-12  Score=132.94  Aligned_cols=183  Identities=17%  Similarity=0.187  Sum_probs=120.3

Q ss_pred             ccccccceeEEEEEeec--C----eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK--G----EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~--G----~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.+|.|++|+||+|+..  +    ..||+|+.++.....                                         
T Consensus         5 ~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------   43 (258)
T smart00219        5 KKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQ-----------------------------------------   43 (258)
T ss_pred             ceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChH-----------------------------------------
Confidence            57999999999999993  3    889999986542211                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcC-CCHHHHHHHHHH--HHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELG-VDRKRLGRYAVE--SYL  447 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g-~d~~~la~~lv~--~~l  447 (766)
                      ..-++..|.+.+..+     +++++  ++.+.  ...+..+++|||++|.+|.++....... .+...+...+.+  ..+
T Consensus        44 ~~~~~~~e~~~l~~l-----~~~~i--~~~~~~~~~~~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l  116 (258)
T smart00219       44 QIEEFLREARIMRKL-----DHPNI--VKLLGVCTEEEPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGM  116 (258)
T ss_pred             HHHHHHHHHHHHHhc-----CCCch--heEEEEEcCCCeeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHH
Confidence            011333444444333     22322  23332  2335789999999999999875432222 455444443332  236


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~  527 (766)
                      ..+|..|++|+|++|+||+++.  ++.++++|||++........  +..   ........+++++....+..+...|+++
T Consensus       117 ~~lh~~~~~h~dl~~~nil~~~--~~~~~l~dfg~~~~~~~~~~--~~~---~~~~~~~~y~~Pe~~~~~~~~~~~Di~s  189 (258)
T smart00219      117 EYLESKNFIHRDLAARNCLVGE--NLVVKISDFGLSRDLYDDDY--YKK---KGGKLPIRWMAPESLKDGKFTSKSDVWS  189 (258)
T ss_pred             HHHhcCCeeecccccceEEEcc--CCeEEEcccCCceecccccc--ccc---ccCCCcccccChHHhccCCCCcchhHHH
Confidence            7889999999999999999986  78999999999987765411  000   0011335567777777777788899999


Q ss_pred             HHHHHHHHH
Q 004234          528 VRRTAQFFL  536 (766)
Q Consensus       528 l~~~i~~~l  536 (766)
                      +...+.+++
T Consensus       190 lG~i~~~l~  198 (258)
T smart00219      190 FGVLLWEIF  198 (258)
T ss_pred             HHHHHHHHH
Confidence            987665554

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.42  E-value=3.2e-12  Score=131.02  Aligned_cols=184  Identities=15%  Similarity=0.124  Sum_probs=122.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||+|++|.||+|+.  +|+.|+||........                                  +....      +
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------------------------~~~~~------~   45 (254)
T cd06627           6 DLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIK----------------------------------EEALK------S   45 (254)
T ss_pred             eEEcccCCeEEEEEEEcCCCcEEEEEEecccccC----------------------------------HHHHH------H
Confidence            6899999999999998  5899999987433110                                  00001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++.     ++++.-+.-+.......+++|||++|.+|.++.... ...+...+...+.+  ..+..+|..|
T Consensus        46 ~~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~~i~~~l~~lH~~~  119 (254)
T cd06627          46 IMQEIDLLKNLK-----HPNIVKYIGSIETSDSLYIILEYAENGSLRQIIKKF-GPFPESLVAVYVYQVLQGLAYLHEQG  119 (254)
T ss_pred             HHHHHHHHHhCC-----CCCccEEEEEEEeCCEEEEEEecCCCCcHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHhhCC
Confidence            334444444432     233222222223346679999999999998865322 23444443333322  2367789999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|+||+++.  ++.++++|||++..+......      .....++..+++++...........|++++...+.+
T Consensus       120 i~H~dl~p~ni~i~~--~~~~~l~d~~~~~~~~~~~~~------~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~  191 (254)
T cd06627         120 VIHRDIKAANILTTK--DGVVKLADFGVATKLNDVSKD------DASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIE  191 (254)
T ss_pred             cccCCCCHHHEEECC--CCCEEEeccccceecCCCccc------ccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHH
Confidence            999999999999986  789999999999988765432      122245667788888776666677899998877665


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       192 l~  193 (254)
T cd06627         192 LL  193 (254)
T ss_pred             HH
Confidence            54

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.42  E-value=1.6e-12  Score=134.51  Aligned_cols=190  Identities=15%  Similarity=0.065  Sum_probs=122.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|..  +|++|++|+.+......                              ..       ..+-.+
T Consensus         8 ~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~------------------------------~~-------~~~~~~   50 (263)
T cd06625           8 KLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSP------------------------------ET-------KKEVNA   50 (263)
T ss_pred             ceecCCCceEEEEEEEcCCCcEEEEEEEeecccch------------------------------hh-------HHHHHH
Confidence            6899999999999998  58999999874332111                              00       000113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~---la~~lv~~~l~qI~~~  453 (766)
                      +.+|+..+.++     +++++....-+.+.....+++|||++|++|.+..... ...+...   ++..++ ..+..+|..
T Consensus        51 ~~~e~~~l~~l-----~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~-~~l~~lH~~  123 (263)
T cd06625          51 LECEIQLLKNL-----QHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAY-GALTETVTRKYTRQIL-EGVEYLHSN  123 (263)
T ss_pred             HHHHHHHHHhC-----CCCCeeeeEEEEccCCeEEEEEEECCCCcHHHHHHHh-CCCCHHHHHHHHHHHH-HHHHHHHhC
Confidence            45555555444     2344433333334456789999999999998864321 1223222   222222 346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||+||+++.  +++++|+|||++..+........   ......+...++++++..........|++++...+.
T Consensus       124 ~i~H~dl~p~nilv~~--~~~~~l~dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  198 (263)
T cd06625         124 MIVHRDIKGANILRDS--AGNVKLGDFGASKRLQTICSSGT---GMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVV  198 (263)
T ss_pred             CeecCCCCHHHEEEcC--CCCEEEeecccceeccccccccc---cccCCCcCccccCcceeccCCCCchhhhHHHHHHHH
Confidence            9999999999999985  88999999999987654321110   001122345677777776666677789999988776


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       199 el~~  202 (263)
T cd06625         199 EMLT  202 (263)
T ss_pred             HHHh
Confidence            6553

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.42  E-value=1.7e-12  Score=138.59  Aligned_cols=182  Identities=18%  Similarity=0.154  Sum_probs=120.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|..  +|+.||+|.....-...                                          .-.
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~------------------------------------------~~~   62 (297)
T cd06656          25 EKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPK------------------------------------------KEL   62 (297)
T ss_pred             eeeccCCCeEEEEEEECCCCCEEEEEEEecCccch------------------------------------------HHH
Confidence            5799999999999997  69999999763211100                                          001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|...+..+     +++++.-+.-+.......+++|||++|+++.++..  ....+...+...+.+  ..+..+|..|
T Consensus        63 ~~~e~~~l~~~-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~~l~~~L~~LH~~~  135 (297)
T cd06656          63 IINEILVMREN-----KNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT--ETCMDEGQIAAVCRECLQALDFLHSNQ  135 (297)
T ss_pred             HHHHHHHHHhC-----CCCCEeeEEEEEecCCEEEEeecccCCCCHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            23333333322     22333222222334567899999999999998753  223344444443322  2367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||+++.  ++.++++|||.+..+.+.....      ....+++.++++++...+..++..|++++...+.+
T Consensus       136 i~H~dL~p~Nili~~--~~~~~l~Dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~  207 (297)
T cd06656         136 VIHRDIKSDNILLGM--DGSVKLTDFGFCAQITPEQSKR------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIE  207 (297)
T ss_pred             cccCCCCHHHEEECC--CCCEEECcCccceEccCCccCc------CcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHH
Confidence            999999999999985  8899999999998776543211      11234566778888777666778899999877766


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       208 l~t  210 (297)
T cd06656         208 MVE  210 (297)
T ss_pred             HHh
Confidence            553

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.42  E-value=9.8e-13  Score=144.53  Aligned_cols=188  Identities=16%  Similarity=0.173  Sum_probs=116.9

Q ss_pred             hhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          293 FERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       293 F~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      ...|.. +.||+|++|.||+|..  .++.||||+........                                  +.. 
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~-   67 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQ----------------------------------THA-   67 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCc----------------------------------hhH-
Confidence            344433 6899999999999998  58999999874321110                                  000 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeec-----cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH-
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV-  443 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-----~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv-  443 (766)
                           -++.+|...+..+    .+..-+.+..++..     .....++||||++|. +.+...   ...+...+...+. 
T Consensus        68 -----~~~~~E~~~l~~l----~h~~ii~~~~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~---~~~~~~~~~~~~~q  134 (364)
T cd07875          68 -----KRAYRELVLMKCV----NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDAN-LCQVIQ---MELDHERMSYLLYQ  134 (364)
T ss_pred             -----HHHHHHHHHHHhc----CCCCccccceeecccccccccCeEEEEEeCCCCC-HHHHHH---hcCCHHHHHHHHHH
Confidence                 1122333333322    12111222222211     123469999999874 433321   1234333333322 


Q ss_pred             -HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004234          444 -ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (766)
Q Consensus       444 -~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~  522 (766)
                       -..+..+|..|++|+|+||.||+++.  ++.++|+|||++.........       ....+...++++++......++.
T Consensus       135 i~~aL~~LH~~~ivH~Dlkp~NIll~~--~~~~kL~DfG~a~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~  205 (364)
T cd07875         135 MLCGIKHLHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMM-------TPYVVTRYYRAPEVILGMGYKEN  205 (364)
T ss_pred             HHHHHHHHhhCCeecCCCCHHHEEECC--CCcEEEEeCCCccccCCCCcc-------cCCcccCCcCCHHHHhCCCCCch
Confidence             23478889999999999999999986  889999999999876543210       11234567788888877667778


Q ss_pred             CCHHHHHHHHHHHHH
Q 004234          523 GDTTAVRRTAQFFLN  537 (766)
Q Consensus       523 ~D~~~l~~~i~~~l~  537 (766)
                      .|++++...+.+++.
T Consensus       206 ~DiwSlG~il~ell~  220 (364)
T cd07875         206 VDIWSVGCIMGEMIK  220 (364)
T ss_pred             hhHHhHHHHHHHHHh
Confidence            999999988776653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.42  E-value=3.3e-12  Score=124.66  Aligned_cols=182  Identities=18%  Similarity=0.208  Sum_probs=120.0

Q ss_pred             ccccceeEEEEEeec--CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          301 IAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       301 IgsaSiGQVhrA~l~--G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      ||+|++|+||+++..  |++++||+.+++....                                         .+-.+.
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~-----------------------------------------~~~~~~   39 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS-----------------------------------------LLEELL   39 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh-----------------------------------------HHHHHH
Confidence            689999999999994  9999999986543221                                         112344


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCcc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFF  456 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gff  456 (766)
                      +|.+.+.++.+     +++.-+.-+....+..+++|||++|.+|.++........+...+...+..  ..+..+|..|++
T Consensus        40 ~e~~~~~~l~~-----~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~  114 (215)
T cd00180          40 REIEILKKLNH-----PNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGII  114 (215)
T ss_pred             HHHHHHHhcCC-----CCeeeEeeeeecCCeEEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCee
Confidence            55555554432     22333333333345789999999999999875433223454444443322  346889999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHH
Q 004234          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~~i~~~  535 (766)
                      |+|++|+||++++ .+++++++|||.+........      ..........++.++....+ ..+...|.+++...+..+
T Consensus       115 H~dl~~~ni~~~~-~~~~~~l~d~~~~~~~~~~~~------~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l  187 (215)
T cd00180         115 HRDLKPENILLDS-DNGKVKLADFGLSKLLTSDKS------LLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL  187 (215)
T ss_pred             ccCCCHhhEEEeC-CCCcEEEecCCceEEccCCcc------hhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH
Confidence            9999999999984 258999999999998876542      01112345556666666655 556677888887655443

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.42  E-value=2.4e-12  Score=136.49  Aligned_cols=186  Identities=17%  Similarity=0.117  Sum_probs=120.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|..  +|+.||||...+.....                                 .+      .+-.
T Consensus         6 ~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~---------------------------------~~------~~~~   46 (285)
T cd05630           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK---------------------------------RK------GESM   46 (285)
T ss_pred             EEeecCCCeEEEEEEEcCCCceEEEEEEehhhccc---------------------------------hH------HHHH
Confidence            5699999999999999  58999999774321110                                 00      0111


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|...+.++.    +...+.+...+ ......+++|||++|++|.+.... ...+++...+...+.+  ..+..+|..
T Consensus        47 ~~~E~~il~~l~----~~~i~~~~~~~-~~~~~~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~  121 (285)
T cd05630          47 ALNEKQILEKVN----SRFVVSLAYAY-ETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQE  121 (285)
T ss_pred             HHHHHHHHHhCC----CCCeeeeeEEE-ecCCEEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            234444444332    21112222222 234567999999999999886532 2223444444333332  336778999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|.||+++.  ++.++++|||++..........       -..+...++++++...+..+...|++++...+.
T Consensus       122 ~iiH~dikp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~~-------~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~  192 (285)
T cd05630         122 RIVYRDLKPENILLDD--HGHIRISDLGLAVHVPEGQTIK-------GRVGTVGYMAPEVVKNERYTFSPDWWALGCLLY  192 (285)
T ss_pred             CEEeCCCCHHHEEECC--CCCEEEeeccceeecCCCcccc-------CCCCCccccChHHHcCCCCCCccccHHHHHHHH
Confidence            9999999999999986  7899999999987765432110       113466788888887777778889999987766


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       193 ~l~~  196 (285)
T cd05630         193 EMIA  196 (285)
T ss_pred             HHHh
Confidence            6543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.42  E-value=7.3e-13  Score=142.87  Aligned_cols=188  Identities=18%  Similarity=0.186  Sum_probs=117.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                        .....
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------------~~~~~   45 (338)
T cd07859           6 EVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHV----------------------------------------SDATR   45 (338)
T ss_pred             EEEeecCCeEEEEEEECCCCCEEEEEEechhhccc----------------------------------------hhHHH
Confidence            5799999999999998  58999999874211100                                        00113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC----CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT----TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s----t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI  450 (766)
                      +.+|++.+.++.    +..-+.+..++....    ...++||||++| .|.++... ...++...+...+.  -..+..+
T Consensus        46 ~~~E~~~l~~l~----hpniv~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~-~~~~~~~~~~~i~~qi~~aL~~L  119 (338)
T cd07859          46 ILREIKLLRLLR----HPDIVEIKHIMLPPSRREFKDIYVVFELMES-DLHQVIKA-NDDLTPEHHQFFLYQLLRALKYI  119 (338)
T ss_pred             HHHHHHHHHhCC----CCCEeeecceEeccCCCCCceEEEEEecCCC-CHHHHHHh-cccCCHHHHHHHHHHHHHHHHHH
Confidence            445665555442    222222333332111    236999999975 66664321 12244443333322  2347888


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc--CCCCCCCCHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM--GVLVPTGDTTAV  528 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l--G~~~~~~D~~~l  528 (766)
                      |..|++|+|+||.||+++.  ++.++|+|||++..........   ....-..++..++++++...  +..++..|++++
T Consensus       120 H~~~ivH~dlkp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~~---~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSl  194 (338)
T cd07859         120 HTANVFHRDLKPKNILANA--DCKLKICDFGLARVAFNDTPTA---IFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSI  194 (338)
T ss_pred             HHCCeecCCCCHHHeEECC--CCcEEEccCccccccccccCcc---ccccCCCCCCCcCCHHHHhccccccCchhHHHHH
Confidence            9999999999999999986  8999999999998653321111   00111235666788887754  455677899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       195 Gvvl~el~t  203 (338)
T cd07859         195 GCIFAEVLT  203 (338)
T ss_pred             HHHHHHHHc
Confidence            987776653

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.41  E-value=2e-12  Score=141.26  Aligned_cols=85  Identities=15%  Similarity=0.092  Sum_probs=61.2

Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~  525 (766)
                      .+..+|..|++|+|++|.||+++.  ++.++++|||++..+......  ..  .+.....+.+++++....+..+...|+
T Consensus       191 al~~lH~~~i~H~dikp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~--~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di  264 (343)
T cd05103         191 GMEFLASRKCIHRDLAARNILLSE--NNVVKICDFGLARDIYKDPDY--VR--KGDARLPLKWMAPETIFDRVYTIQSDV  264 (343)
T ss_pred             HHHHHHhCCeecCCCccCeEEEcC--CCcEEEEecccccccccCcch--hh--cCCCCCCcceECcHHhcCCCCCchhhH
Confidence            367789999999999999999985  789999999998876432110  00  111123345777887766667778899


Q ss_pred             HHHHHHHHHHH
Q 004234          526 TAVRRTAQFFL  536 (766)
Q Consensus       526 ~~l~~~i~~~l  536 (766)
                      +++...+.+++
T Consensus       265 ~slG~~l~el~  275 (343)
T cd05103         265 WSFGVLLWEIF  275 (343)
T ss_pred             HHHHHHHHHHH
Confidence            99987766554

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.41  E-value=2.2e-12  Score=135.98  Aligned_cols=178  Identities=17%  Similarity=0.143  Sum_probs=118.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||+|++|.||+|+.  +|+.||||+...+....                                         .+-+
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~-----------------------------------------~~~~   45 (279)
T cd06619           7 EILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVE-----------------------------------------LQKQ   45 (279)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChH-----------------------------------------HHHH
Confidence            5799999999999998  68999999874321100                                         0113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~~G  454 (766)
                      +.+|.+.+.++     +++++.-+.-+.......+|+|||++|+++.....     .+...+.....  -..+..+|..|
T Consensus        46 ~~~E~~~l~~l-----~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~-----~~~~~~~~~~~qi~~~l~~lH~~~  115 (279)
T cd06619          46 IMSELEILYKC-----DSPYIIGFYGAFFVENRISICTEFMDGGSLDVYRK-----IPEHVLGRIAVAVVKGLTYLWSLK  115 (279)
T ss_pred             HHHHHHHHHhC-----CCCCeeeEEEEEEECCEEEEEEecCCCCChHHhhc-----CCHHHHHHHHHHHHHHHHHHHHCC
Confidence            44455544443     22333322222233456789999999998875422     22222222222  22367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||+++.  ++.++++|||++..+......        ...+...+++++....+..+...|++++...+.+
T Consensus       116 i~H~dlkp~Nill~~--~~~~~l~dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~  185 (279)
T cd06619         116 ILHRDVKPSNMLVNT--RGQVKLCDFGVSTQLVNSIAK--------TYVGTNAYMAPERISGEQYGIHSDVWSLGISFME  185 (279)
T ss_pred             EeeCCCCHHHEEECC--CCCEEEeeCCcceeccccccc--------CCCCChhhcCceeecCCCCCCcchHHHHHHHHHH
Confidence            999999999999986  899999999999876543221        1235667788887776667778899999887766


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       186 l~~  188 (279)
T cd06619         186 LAL  188 (279)
T ss_pred             HHh
Confidence            553

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.41  E-value=3.8e-12  Score=132.16  Aligned_cols=183  Identities=16%  Similarity=0.163  Sum_probs=121.3

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||.|++|+||+|.. .+..||+|..+++...                                           +-+|
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~-------------------------------------------~~~~   48 (260)
T cd05070          12 KKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMS-------------------------------------------PESF   48 (260)
T ss_pred             heeccccCceEEEEEecCCceeEEEEecCCCCC-------------------------------------------HHHH
Confidence            5799999999999998 6788999988653211                                           0124


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      .+|+.-+.++    .+..-+.+...+  .....+++|||++|++|.++.... ....+...+...+.+  ..+..+|..|
T Consensus        49 ~~E~~~l~~l----~~~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~  122 (260)
T cd05070          49 LEEAQIMKKL----RHDKLVQLYAVV--SEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMN  122 (260)
T ss_pred             HHHHHHHHhc----CCCceEEEEeEE--CCCCcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            4454444443    222223333332  245679999999999998865321 122344333333322  3367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||++++  ++.++|+|||.+..+........     .-......++++++...+..+...|++++...+.+
T Consensus       123 i~H~di~p~Nili~~--~~~~~l~dfg~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~  195 (260)
T cd05070         123 YIHRDLRSANILVGD--GLVCKIADFGLARLIEDNEYTAR-----QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE  195 (260)
T ss_pred             cccCCCccceEEEeC--CceEEeCCceeeeeccCcccccc-----cCCCCCccccChHHHhcCCCcchhhhHHHHHHHHH
Confidence            999999999999986  78999999999987754321110     00112345778888777777788999999887776


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       196 l~~  198 (260)
T cd05070         196 LVT  198 (260)
T ss_pred             HHh
Confidence            653

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.41  E-value=3.1e-12  Score=135.58  Aligned_cols=183  Identities=19%  Similarity=0.135  Sum_probs=122.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|..  +|+.||||+.++.-...                                       ....-.
T Consensus         7 ~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------------~~~~~~   47 (290)
T cd05580           7 KTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVK---------------------------------------LKQVEH   47 (290)
T ss_pred             EEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhh---------------------------------------hhHHHH
Confidence            5799999999999998  58999999874210000                                       001123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++.    +..-+.+...+ ......+++|||++|++|.+..... ..++...+...+.+  ..+..+|..|
T Consensus        48 ~~~e~~~l~~l~----h~~i~~~~~~~-~~~~~~~~v~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~qil~~l~~lH~~~  121 (290)
T cd05580          48 VLNEKRILQSIR----HPFLVNLYGSF-QDDSNLYLVMEYVPGGELFSHLRKS-GRFPEPVARFYAAQVVLALEYLHSLD  121 (290)
T ss_pred             HHHHHHHHHhCC----CCCccceeeEE-EcCCeEEEEEecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            445555555442    22122333333 2345679999999999998865322 23444443333222  3467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  ++.++|+|||++..+.....         ...+.+.+++++...-+......|++++...+.+
T Consensus       122 i~H~dl~p~nili~~--~~~~kl~dfg~~~~~~~~~~---------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~  190 (290)
T cd05580         122 IVYRDLKPENLLLDS--DGYIKITDFGFAKRVKGRTY---------TLCGTPEYLAPEIILSKGYGKAVDWWALGILIYE  190 (290)
T ss_pred             EecCCCCHHHEEECC--CCCEEEeeCCCccccCCCCC---------CCCCCccccChhhhcCCCCCccccHHHHHHHHHH
Confidence            999999999999986  88999999999988765411         1234566778887766666677899999877766


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       191 l~~  193 (290)
T cd05580         191 MLA  193 (290)
T ss_pred             HHh
Confidence            553

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.41  E-value=1.7e-12  Score=137.02  Aligned_cols=189  Identities=19%  Similarity=0.175  Sum_probs=121.4

Q ss_pred             ccccccceeEEEEEee------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      ..||.|++|.||.|.+      ++..||+|..++......                                        
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~----------------------------------------   49 (284)
T cd05079          10 RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNH----------------------------------------   49 (284)
T ss_pred             eecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHH----------------------------------------
Confidence            4699999999999974      378999998765432110                                        


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQ  449 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~q  449 (766)
                       .-++.+|...+..+    .+..-+.+...+... ....++||||++|++|.++........+...+...+.  ...+..
T Consensus        50 -~~~~~~e~~~l~~l----~h~~i~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~  124 (284)
T cd05079          50 -IADLKKEIEILRNL----YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDY  124 (284)
T ss_pred             -HHHHHHHHHHHHhC----CCCCeeeeeeEEecCCCCceEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence             01234454444443    222222333333222 1346899999999999987543222344444333332  234788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|+|+||.||+++.  ++.++|.|||++..+.......  . ......+...+++++....+..++..|++++.
T Consensus       125 lH~~gi~H~dlkp~Nil~~~--~~~~~l~dfg~~~~~~~~~~~~--~-~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG  199 (284)
T cd05079         125 LGSRQYVHRDLAARNVLVES--EHQVKIGDFGLTKAIETDKEYY--T-VKDDLDSPVFWYAPECLIQSKFYIASDVWSFG  199 (284)
T ss_pred             HHHCCeeecccchheEEEcC--CCCEEECCCccccccccCccce--e-ecCCCCCCccccCHHHhccCCCCccccchhhh
Confidence            99999999999999999985  8899999999998775432110  0 01112234456777777666677889999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       200 ~il~ellt  207 (284)
T cd05079         200 VTLYELLT  207 (284)
T ss_pred             hhhhhhhc
Confidence            87776653

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.41  E-value=3.1e-12  Score=135.28  Aligned_cols=183  Identities=17%  Similarity=0.148  Sum_probs=115.4

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||+|++|.||+|..  +|+.||||+.++.....-.                                       .+..+
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~---------------------------------------~~~~~   41 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQ---------------------------------------GETLA   41 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccch---------------------------------------HHHHH
Confidence            379999999999998  5899999988543211100                                       00011


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      ..|.. +.++.... +++.+  +..+.  ......+++|||++|++|.+.... ...++...+...+.+  ..+..+|..
T Consensus        42 ~~~~~-~~~~~~~~-~~~~i--~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~-~~~l~~~~~~~i~~qi~~al~~lH~~  116 (279)
T cd05633          42 LNERI-MLSLVSTG-DCPFI--VCMTYAFHTPDKLCFILDLMNGGDLHYHLSQ-HGVFSEKEMRFYATEIILGLEHMHNR  116 (279)
T ss_pred             HHHHH-HHHHHhhC-CCCcE--eEEEEEEecCCeEEEEEecCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            11211 11111111 22333  33332  234567999999999999876432 222444444333322  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~~i  532 (766)
                      |++|+|++|+||+++.  ++.++++|||++..++.....        ...+...+++++....| ..+...|++++...+
T Consensus       117 ~ivH~dikp~Nil~~~--~~~~~l~dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l  186 (279)
T cd05633         117 FVVYRDLKPANILLDE--HGHVRISDLGLACDFSKKKPH--------ASVGTHGYMAPEVLQKGTAYDSSADWFSLGCML  186 (279)
T ss_pred             CcCCCCCCHHHEEECC--CCCEEEccCCcceeccccCcc--------CcCCCcCccCHHHhcCCCCCCchhhhHHHHHHH
Confidence            9999999999999985  789999999998766543211        12356677888876543 346678999998776


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       187 ~~l~  190 (279)
T cd05633         187 FKLL  190 (279)
T ss_pred             HHHH
Confidence            6654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.41  E-value=2.8e-12  Score=132.65  Aligned_cols=178  Identities=13%  Similarity=0.123  Sum_probs=118.7

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.+|+|++|.||+|...|+.||||..+....                                           ..-.+.
T Consensus        12 ~~ig~g~~g~v~~~~~~~~~v~iK~~~~~~~-------------------------------------------~~~~~~   48 (256)
T cd05039          12 ATIGKGEFGDVMLGDYRGQKVAVKCLKDDST-------------------------------------------AAQAFL   48 (256)
T ss_pred             eeeecCCCceEEEEEecCcEEEEEEeccchh-------------------------------------------HHHHHH
Confidence            6799999999999999999999998732211                                           011233


Q ss_pred             HHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhc-CCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          379 QEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~-g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +|...+.++.     ++++ .+...+ ...+..+++|||++|++|.++...... ..+...+...+.+  ..+..+|..|
T Consensus        49 ~e~~~l~~l~-----~~~i~~~~~~~-~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~  122 (256)
T cd05039          49 AEASVMTTLR-----HPNLVQLLGVV-LQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKN  122 (256)
T ss_pred             HHHHHHHhcC-----CcceeeeEEEE-cCCCCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            3444344331     2222 222222 236778999999999999987543221 2344433333322  3367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|+||+++.  ++.++++|||.+.........         ......+++++....+...+..|++++...+.+
T Consensus       123 i~H~di~p~Nili~~--~~~~~l~d~g~~~~~~~~~~~---------~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~  191 (256)
T cd05039         123 FVHRDLAARNVLVSE--DLVAKVSDFGLAKEASQGQDS---------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWE  191 (256)
T ss_pred             ccchhcccceEEEeC--CCCEEEccccccccccccccc---------CCCcccccCchhhcCCcCCcHHHHHHHHHHHHH
Confidence            999999999999986  889999999999887443221         122345667777777777778899998876655


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       192 l~  193 (256)
T cd05039         192 IY  193 (256)
T ss_pred             HH
Confidence            44

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.41  E-value=2.5e-12  Score=133.78  Aligned_cols=193  Identities=13%  Similarity=0.051  Sum_probs=118.6

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||.|++|+||+|.. +|+.||||..+......                             .. ..+.      .-.+
T Consensus         6 ~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~-----------------------------~~-~~~~------~~~~   49 (265)
T cd06631           6 EVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNV-----------------------------LA-AEKE------YEKL   49 (265)
T ss_pred             ceEeccCCeEEEEEEEcCCCeEEEEEeecCccch-----------------------------hh-HHHH------HHHH
Confidence            5799999999999988 79999999874322111                             00 0001      1134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~~Gf  455 (766)
                      .+|+..+.++.     ++++.-..-+.......+++|||++|++|.++.... ...+...+...+.  -..+..+|..|+
T Consensus        50 ~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i  123 (265)
T cd06631          50 QEEVDLLKSLK-----HVNIVQYLGTCLDDNTISIFMEFVPGGSISSILNRF-GPLPEPVFCKYTKQILDGVAYLHNNCV  123 (265)
T ss_pred             HHHHHHHHhcC-----CCCEeeEeeEeecCCeEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            44554444442     222221111222345679999999999999875321 2233333332222  234677899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHH-HHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIRE-GLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~-~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      +|+|++|.||+++.  ++.++++|||++..+...... ...... ....+...+++++...-....+..|++++...+.+
T Consensus       124 ~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~  200 (265)
T cd06631         124 VHRDIKGNNVMLMP--NGIIKLIDFGCARRLAWVGLHGTHSNML-KSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFE  200 (265)
T ss_pred             ccCCcCHHhEEECC--CCeEEeccchhhHhhhhccccccccccc-cccCCCccccChhhhcCCCCcchhhHHHHHHHHHH
Confidence            99999999999985  889999999998765321100 000000 11234556777777766666778899998876665


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       201 l~  202 (265)
T cd06631         201 MA  202 (265)
T ss_pred             HH
Confidence            54

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.41  E-value=2.1e-12  Score=133.95  Aligned_cols=183  Identities=16%  Similarity=0.143  Sum_probs=121.4

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||.|++|.||+|.. +++.||+|...+.-..                                           .-++
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~-------------------------------------------~~~~   48 (261)
T cd05072          12 KKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMS-------------------------------------------VQAF   48 (261)
T ss_pred             eecCCcCCceEEEEEecCCceEEEEEccCCchh-------------------------------------------HHHH
Confidence            6799999999999998 6788999986442110                                           0023


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv--~~~l~qI~~~G  454 (766)
                      .+|...+..+     +++++.-...+.......+++|||++|++|.++.... ....+...+...+.  ...+..+|..|
T Consensus        49 ~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~  123 (261)
T cd05072          49 LEEANLMKTL-----QHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKN  123 (261)
T ss_pred             HHHHHHHHhC-----CCCCeeeEEEEEcCCCCcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            4454444443     2233322222233345679999999999998865322 22234334333322  23467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||+++.  ++.+++.|||.+..+.......     .........+++++....+..++..|++++...+.+
T Consensus       124 i~H~dl~p~nili~~--~~~~~l~dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~  196 (261)
T cd05072         124 YIHRDLRAANVLVSE--SLMCKIADFGLARVIEDNEYTA-----REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYE  196 (261)
T ss_pred             eeccccchhhEEecC--CCcEEECCCccceecCCCceec-----cCCCccceecCCHHHhccCCCChhhhhhhhHHHHHH
Confidence            999999999999986  8899999999998875432110     001122345778888877777788899999887766


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       197 l~  198 (261)
T cd05072         197 IV  198 (261)
T ss_pred             HH
Confidence            65

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.41  E-value=3.1e-12  Score=131.68  Aligned_cols=180  Identities=19%  Similarity=0.203  Sum_probs=121.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+++|++|.||+|..  +|+.|++|..+....                                            .-+
T Consensus         9 ~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--------------------------------------------~~~   44 (256)
T cd06612           9 EKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--------------------------------------------LQE   44 (256)
T ss_pred             hhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--------------------------------------------HHH
Confidence            5799999999999999  389999998632100                                            013


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|.+.+.++     +++++ .+...+ ......+++|||++|.+|.++.......++...+...+.+  ..+..+|..
T Consensus        45 ~~~e~~~~~~l-----~~~~i~~~~~~~-~~~~~~~l~~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~  118 (256)
T cd06612          45 IIKEISILKQC-----DSPYIVKYYGSY-FKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSN  118 (256)
T ss_pred             HHHHHHHHHhC-----CCCcEeeeeeee-ecCCcEEEEEecCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            44444444444     22222 222222 2235678999999999999976543444455444443333  336778999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|+||+++.  ++.++|.|||++..+.......      ....+...++.++.......+...|++++...+.
T Consensus       119 ~i~H~dl~~~ni~~~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~  190 (256)
T cd06612         119 KKIHRDIKAGNILLNE--EGQAKLADFGVSGQLTDTMAKR------NTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAI  190 (256)
T ss_pred             CcccCCCCcceEEECC--CCcEEEcccccchhcccCcccc------ccccCCccccCHHHHhcCCCCchhhHHHHHHHHH
Confidence            9999999999999986  8899999999998876543211      1122455677788777666677789999987766


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       191 ~l~  193 (256)
T cd06612         191 EMA  193 (256)
T ss_pred             HHH
Confidence            554

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=1e-12  Score=148.19  Aligned_cols=188  Identities=21%  Similarity=0.332  Sum_probs=126.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||-|.||.|..++-  +...+|+|.+|.       .|+         +                 .+.--..+..|-|
T Consensus       635 k~iGvGAFGeV~Lv~KvDT~~lYAmKTLrK-------aDV---------l-----------------~rnQvaHVKAERD  681 (1034)
T KOG0608|consen  635 KTIGVGAFGEVCLVRKVDTRALYAMKTLRK-------ADV---------L-----------------MRNQVAHVKAERD  681 (1034)
T ss_pred             eeecccccceeEEEeecchhhHHHHhhhHH-------HHH---------H-----------------hhhhhhhhhhhhh
Confidence            6899999999999886  344566664421       111         1                 1112234556777


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC--CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH---HHHHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA---VESYLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s--t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l---v~~~l~qI~  451 (766)
                      .+.||.|           ++  |.+.|..+.  ...|.|||||+|+.+-.++  -+.|+-.+.+|+--   +.+.++.+|
T Consensus       682 ILAEADn-----------~W--VVrLyySFQDkdnLYFVMdYIPGGDmMSLL--IrmgIFeE~LARFYIAEltcAiesVH  746 (1034)
T KOG0608|consen  682 ILAEADN-----------EW--VVRLYYSFQDKDNLYFVMDYIPGGDMMSLL--IRMGIFEEDLARFYIAELTCAIESVH  746 (1034)
T ss_pred             hHhhcCC-----------cc--eEEEEEEeccCCceEEEEeccCCccHHHHH--HHhccCHHHHHHHHHHHHHHHHHHHH
Confidence            7777743           22  345554443  4569999999999888763  35566666666543   334578899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccC----------------------h------------hhH--HHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS----------------------P------------NIR--EGLL  495 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~----------------------~------------~~r--~~l~  495 (766)
                      ..||+|||+||.||||+.  ||+|+|.|||++.-+.                      +            +.|  .+-.
T Consensus       747 kmGFIHRDiKPDNILIDr--dGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~  824 (1034)
T KOG0608|consen  747 KMGFIHRDIKPDNILIDR--DGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQ  824 (1034)
T ss_pred             hccceecccCccceEEcc--CCceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhh
Confidence            999999999999999997  9999999999986321                      0            001  1112


Q ss_pred             HHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          496 EAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       496 ~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ..+...+-+++.+++++++.---.+..+|-+.+...+.+++
T Consensus       825 r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~  865 (1034)
T KOG0608|consen  825 RILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEML  865 (1034)
T ss_pred             hhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHh
Confidence            23334455788889988887655567789998888776665

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.41  E-value=1.7e-12  Score=142.30  Aligned_cols=182  Identities=18%  Similarity=0.170  Sum_probs=114.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+........                                  +      ....
T Consensus        27 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~------~~~~   66 (359)
T cd07876          27 KPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQ----------------------------------T------HAKR   66 (359)
T ss_pred             EEeecCCCEEEEEEEEcCCCceeEEEEecccccch----------------------------------h------HHHH
Confidence            7899999999999998  58999999874321110                                  0      0012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec-----cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  449 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-----~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~q  449 (766)
                      +.+|...+..+    .+..-+.+..++..     .....+++|||++|.....+.    ..++...+...+  +-..+..
T Consensus        67 ~~~E~~~l~~l----~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~~~~qi~~~L~~  138 (359)
T cd07876          67 AYRELVLLKCV----NHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIH----MELDHERMSYLLYQMLCGIKH  138 (359)
T ss_pred             HHHHHHHHHhC----CCCCEeeeeeeeccCCCccccceeEEEEeCCCcCHHHHHh----ccCCHHHHHHHHHHHHHHHHH
Confidence            22333333332    22222223233221     112468999999985333221    123444443333  2234788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|+|+||.||+++.  +|.++|+|||++.........       .-..+...+++++........+..|++++.
T Consensus       139 LH~~~ivHrDlkp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG  209 (359)
T cd07876         139 LHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTACTNFMM-------TPYVVTRYYRAPEVILGMGYKENVDIWSVG  209 (359)
T ss_pred             HHhCCcccCCCCHHHEEECC--CCCEEEecCCCccccccCccC-------CCCcccCCCCCchhccCCCCCcchhhHHHH
Confidence            99999999999999999986  899999999998765432110       111235567778877666677788999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       210 ~il~el~t  217 (359)
T cd07876         210 CIMGELVK  217 (359)
T ss_pred             HHHHHHHh
Confidence            88777653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.41  E-value=1.8e-12  Score=145.45  Aligned_cols=85  Identities=14%  Similarity=0.066  Sum_probs=62.2

Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~  525 (766)
                      .+..+|..|++|+|++|.||+++.  ++.++++|||++..+.......-    .........+++++....+..++..|+
T Consensus       249 aL~~LH~~~ivH~dikp~Nill~~--~~~~kL~DfGla~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di  322 (400)
T cd05105         249 GMEFLASKNCVHRDLAARNVLLAQ--GKIVKICDFGLARDIMHDSNYVS----KGSTFLPVKWMAPESIFDNLYTTLSDV  322 (400)
T ss_pred             HHHHHHhCCeeCCCCChHhEEEeC--CCEEEEEeCCcceeccccccccc----cCCcCCCcceEChhhhcCCCCCchhhH
Confidence            467889999999999999999986  78899999999987643321100    000112345777887777777888999


Q ss_pred             HHHHHHHHHHH
Q 004234          526 TAVRRTAQFFL  536 (766)
Q Consensus       526 ~~l~~~i~~~l  536 (766)
                      +++...+.+++
T Consensus       323 wSlGvil~ell  333 (400)
T cd05105         323 WSYGILLWEIF  333 (400)
T ss_pred             HHHHHHHHHHH
Confidence            99988776654

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.41  E-value=5.1e-12  Score=130.92  Aligned_cols=181  Identities=17%  Similarity=0.144  Sum_probs=118.9

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|++|.||+|.+ +++.||||+.+++....                                           -++
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~-------------------------------------------~~~   48 (261)
T cd05034          12 RKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSP-------------------------------------------EAF   48 (261)
T ss_pred             eeeccCcceEEEEEEEcCCceEEEEEecCCccCH-------------------------------------------HHH
Confidence            6899999999999998 57889999875432110                                           123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHHh
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      ..|...+.++.     +++  +++.+.  ......+++|||++|++|.++..... ..++...+...+.+  ..+..+|.
T Consensus        49 ~~e~~~l~~l~-----h~~--i~~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~  121 (261)
T cd05034          49 LQEAQIMKKLR-----HDK--LVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLES  121 (261)
T ss_pred             HHHHHHHhhCC-----CCC--EeeeeeeeecCCceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            34444444432     222  333332  23356799999999999988653221 22344433333222  23678899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      .|++|+|++|.||++++  ++.++++|||.+..+.........     -......+++++...-+..++..|++++...+
T Consensus       122 ~~i~h~di~p~nili~~--~~~~~l~d~g~~~~~~~~~~~~~~-----~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il  194 (261)
T cd05034         122 RNYIHRDLAARNILVGE--NLVCKIADFGLARLIEDDEYTARE-----GAKFPIKWTAPEAANYGRFTIKSDVWSFGILL  194 (261)
T ss_pred             CCcccCCcchheEEEcC--CCCEEECccccceeccchhhhhhh-----ccCCCccccCHHHhccCCcCchhHHHHHHHHH
Confidence            99999999999999986  899999999999887642211100     01123456777777766677788999998776


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       195 ~~l~  198 (261)
T cd05034         195 TEIV  198 (261)
T ss_pred             HHHH
Confidence            6654

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.40  E-value=2.7e-12  Score=133.38  Aligned_cols=197  Identities=16%  Similarity=0.113  Sum_probs=120.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..||.|++|+||+|..  +++.||+|+........-                           ...-..++.+      +
T Consensus         6 ~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~---------------------------~~~~~~~~~~------~   52 (267)
T cd06628           6 ALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSAS---------------------------SKDRKRSMLD------A   52 (267)
T ss_pred             ceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccc---------------------------hhHHHHHHHH------H
Confidence            5799999999999998  589999998743321110                           0000111112      3


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~  453 (766)
                      +.+|+..+.++.    + +++ .+... .......+++|||++|.+|.++.... ..++...+...+  +...+..+|..
T Consensus        53 ~~~e~~~l~~l~----h-~~i~~~~~~-~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~l~~~l~~lH~~  125 (267)
T cd06628          53 LAREIALLKELQ----H-ENIVQYLGS-SLDADHLNIFLEYVPGGSVAALLNNY-GAFEETLVRNFVRQILKGLNYLHNR  125 (267)
T ss_pred             HHHHHHHHHhcC----C-CCeeeEEEE-EEeCCccEEEEEecCCCCHHHHHHhc-cCccHHHHHHHHHHHHHHHHHHHhc
Confidence            344444444432    2 322 22222 23345679999999999998865321 223333322222  22336788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|.||++++  ++.++|+|||++..+.................+...+++++....+..+...|++++...+.
T Consensus       126 ~ivH~di~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~  203 (267)
T cd06628         126 GIIHRDIKGANILVDN--KGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVV  203 (267)
T ss_pred             CcccccCCHHHEEEcC--CCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHH
Confidence            9999999999999985  88999999999987753211000000001122445677788777666677789999987776


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       204 ~l~~  207 (267)
T cd06628         204 EMLT  207 (267)
T ss_pred             HHhh
Confidence            6553

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.40  E-value=2e-12  Score=133.36  Aligned_cols=117  Identities=16%  Similarity=0.075  Sum_probs=83.1

Q ss_pred             CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCC-------cEEEE
Q 004234          408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGG-------RLIFY  478 (766)
Q Consensus       408 t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~GffHaDpHPGNILV~~~~~g-------~l~Li  478 (766)
                      ...+++|||++|++|.++.......++...+...+  +-..+..+|..|++|+|++|.||+++.  ++       .++++
T Consensus        73 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~--~~~~~~~~~~~kl~  150 (259)
T cd05037          73 DENIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVAR--YGLNEGYVPFIKLS  150 (259)
T ss_pred             CCcEEEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEec--CccccCCceeEEeC
Confidence            56799999999999998764433344544443332  223467889999999999999999985  44       69999


Q ss_pred             eecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHH
Q 004234          479 DFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       479 DFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG--~~~~~~D~~~l~~~i~~~l  536 (766)
                      |||++..+....          .......++++++...+  ..+...|++++...+.+++
T Consensus       151 Dfg~a~~~~~~~----------~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~  200 (259)
T cd05037         151 DPGIPITVLSRE----------ERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEIC  200 (259)
T ss_pred             CCCccccccccc----------ccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHH
Confidence            999988765411          11234456777777655  5666789999887666554

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.40  E-value=1.8e-12  Score=136.48  Aligned_cols=186  Identities=18%  Similarity=0.171  Sum_probs=115.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||+|+.+......                       .    .             ..+
T Consensus         6 ~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~-----------------------~----~-------------~~~   45 (288)
T cd07863           6 AEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNED-----------------------G----L-------------PLS   45 (288)
T ss_pred             eEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCC-----------------------C----C-------------chH
Confidence            5699999999999998  58999999875432111                       0    0             001


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeec----cCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHH--HHHH
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWE----YTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVE--SYLE  448 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e----~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~lv~--~~l~  448 (766)
                      +.+|..-+.++.. +. ++++ .+-.++..    .....+++|||++| .+.++... ...+++...+...+.+  ..+.
T Consensus        46 ~~~e~~~l~~l~~-~~-h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~  122 (288)
T cd07863          46 TVREVALLKRLEA-FD-HPNIVRLMDVCATSRTDRETKVTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGLD  122 (288)
T ss_pred             HHHHHHHHHHhhh-cC-CCCeeeeeeeeccccCCCCceEEEEEccccc-CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            1222222222221 11 2222 12222211    12346899999997 55554322 2223454444443333  3477


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      .+|..|++|+|+||+||+++.  ++.++|+|||++..++.....       ....++..+++++....+..+...|++++
T Consensus       123 ~lH~~~ivH~dikp~Nili~~--~~~~kl~dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Diwsl  193 (288)
T cd07863         123 FLHANCIVHRDLKPENILVTS--GGQVKLADFGLARIYSCQMAL-------TPVVVTLWYRAPEVLLQSTYATPVDMWSV  193 (288)
T ss_pred             HHHhCCeecCCCCHHHEEECC--CCCEEECccCccccccCcccC-------CCccccccccCchHhhCCCCCCcchhhhH
Confidence            889999999999999999985  889999999999876543211       01123556778888776677788999999


Q ss_pred             HHHHHHHH
Q 004234          529 RRTAQFFL  536 (766)
Q Consensus       529 ~~~i~~~l  536 (766)
                      ...+.+++
T Consensus       194 G~~l~~l~  201 (288)
T cd07863         194 GCIFAEMF  201 (288)
T ss_pred             HHHHHHHH
Confidence            98776654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.40  E-value=2.8e-12  Score=134.58  Aligned_cols=186  Identities=16%  Similarity=0.092  Sum_probs=117.3

Q ss_pred             ccccccceeEEEEEeec-------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      ..||.|++|+||+|.+.       ++.||||+.+......                                        
T Consensus        12 ~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~----------------------------------------   51 (277)
T cd05062          12 RELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMR----------------------------------------   51 (277)
T ss_pred             eeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHH----------------------------------------
Confidence            57999999999999863       4679999763321100                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc---------CCCHHHHHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---------GVDRKRLGRYA  442 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~---------g~d~~~la~~l  442 (766)
                       ...+|.+|+.-+..+    . ++++.-..-+....+..+++|||++|++|.++......         ..+...+...+
T Consensus        52 -~~~~~~~e~~~l~~l----~-~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (277)
T cd05062          52 -ERIEFLNEASVMKEF----N-CHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMA  125 (277)
T ss_pred             -HHHHHHHHHHHHHhC----C-CCCeeeEEEEEcCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHH
Confidence             112344455433332    2 23322112222334678999999999999986532111         12233333332


Q ss_pred             --HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004234          443 --VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (766)
Q Consensus       443 --v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~  520 (766)
                        +...+..+|..|++|+|+||.||++++  ++.++++|||++..+........    .........+++++...-+..+
T Consensus       126 ~~l~~~l~~lH~~~~vH~dlkp~Nil~~~--~~~~~l~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~  199 (277)
T cd05062         126 GEIADGMAYLNANKFVHRDLAARNCMVAE--DFTVKIGDFGMTRDIYETDYYRK----GGKGLLPVRWMSPESLKDGVFT  199 (277)
T ss_pred             HHHHHHHHHHHHCCcccCCcchheEEEcC--CCCEEECCCCCccccCCcceeec----CCCCccCHhhcChhHhhcCCcC
Confidence              223467889999999999999999986  88999999999876543211000    0001124568888888777778


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFFL  536 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~l  536 (766)
                      +..|++++...+.+++
T Consensus       200 ~~~Di~slG~~l~el~  215 (277)
T cd05062         200 TYSDVWSFGVVLWEIA  215 (277)
T ss_pred             chhHHHHHHHHHHHHH
Confidence            8889999987766554

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.40  E-value=1.9e-12  Score=137.55  Aligned_cols=185  Identities=20%  Similarity=0.204  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEeec--------------C--eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHH
Q 004234          299 EPIAAASLGQVHRARLK--------------G--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~--------------G--~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~  362 (766)
                      +.||.|++|.||+|+..              |  ..||||+.+++.....                              
T Consensus        11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~------------------------------   60 (295)
T cd05097          11 EKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTA------------------------------   60 (295)
T ss_pred             hccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHH------------------------------
Confidence            57999999999999862              1  2589998866532210                              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhc---------
Q 004234          363 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL---------  431 (766)
Q Consensus       363 i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~---------  431 (766)
                                 .-+|.+|.+.+.++.    + ++  +++++.  ......+++|||++|++|.++......         
T Consensus        61 -----------~~~~~~ei~~l~~l~----h-~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  122 (295)
T cd05097          61 -----------RNDFLKEIKIMSRLK----N-PN--IIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANN  122 (295)
T ss_pred             -----------HHHHHHHHHHHHhCC----C-CC--cCeEEEEEcCCCccEEEEecCCCCcHHHHHHhcccccccccccc
Confidence                       113455555555542    2 22  233322  334667999999999999886532210         


Q ss_pred             --CCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHH
Q 004234          432 --GVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDAD  507 (766)
Q Consensus       432 --g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~  507 (766)
                        ..+...+...+.+  ..+..+|..|++|+|+||+||++++  ++.++++|||++..+.......    ..+.......
T Consensus       123 ~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~~----~~~~~~~~~~  196 (295)
T cd05097         123 IPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGN--HYTIKIADFGMSRNLYSGDYYR----IQGRAVLPIR  196 (295)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEEEcC--CCcEEecccccccccccCccee----ccCcCcCcee
Confidence              1223333333222  3367789999999999999999985  7899999999987664322100    0111122346


Q ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          508 KVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       508 ~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      +++++....+..+...|++++...+.+++.
T Consensus       197 y~aPE~~~~~~~~~~~DvwSlG~~l~el~~  226 (295)
T cd05097         197 WMAWESILLGKFTTASDVWAFGVTLWEMFT  226 (295)
T ss_pred             ecChhhhccCCcCchhhHHHHHHHHHHHHH
Confidence            777777777777888999999887766553

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.40  E-value=3.2e-12  Score=132.61  Aligned_cols=183  Identities=15%  Similarity=0.125  Sum_probs=117.9

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.+|.|++|.||+|.+ .+..+|||+.+++...                                           +-+|
T Consensus        10 ~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~-------------------------------------------~~~~   46 (256)
T cd05059          10 KELGSGQFGVVHLGKWRGKIDVAIKMIREGAMS-------------------------------------------EDDF   46 (256)
T ss_pred             hhhccCCCceEEEeEecCCccEEEEEeccCCCC-------------------------------------------HHHH
Confidence            5799999999999998 5678999987432110                                           0123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      ..|...+..+     +++++.-..-+.......+++|||++|.+|.+.........+...+.....+  ..+..+|..|+
T Consensus        47 ~~e~~~l~~l-----~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  121 (256)
T cd05059          47 IEEAKVMMKL-----SHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGF  121 (256)
T ss_pred             HHHHHHHHhC-----CCCCEEEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            3344433333     1233222222223445679999999999999865432223344443333322  33678899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|++|.||+++.  ++.++++|||++....+.....     .........++++++...+..+...|++++...+.++
T Consensus       122 ~H~dl~p~ni~i~~--~~~~kl~dfg~~~~~~~~~~~~-----~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l  194 (256)
T cd05059         122 IHRDLAARNCLVGE--DNVVKVSDFGLARYVLDDQYTS-----SQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEV  194 (256)
T ss_pred             ccccccHhhEEECC--CCcEEECCcccceecccccccc-----cCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHH
Confidence            99999999999986  8899999999988664321100     0000112357788887777777788999998766654


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       195 ~  195 (256)
T cd05059         195 F  195 (256)
T ss_pred             h
Confidence            4

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.39  E-value=3.8e-12  Score=131.43  Aligned_cols=182  Identities=14%  Similarity=0.145  Sum_probs=124.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.|+||+.++.....                                         ..-+
T Consensus         7 ~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~-----------------------------------------~~~~   45 (264)
T cd06623           7 KVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEE-----------------------------------------FRKQ   45 (264)
T ss_pred             eeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchH-----------------------------------------HHHH
Confidence            6899999999999999  49999999875432110                                         1123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceee--eccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~--~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      +.+|.+.+.++.     +++  +++.+  .......+++|||++|.+|.++.... ..++...+...+.+  ..+..+|.
T Consensus        46 ~~~e~~~l~~l~-----~~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~l~~~l~~lh~  117 (264)
T cd06623          46 LLRELKTLRSCE-----SPY--VVKCYGAFYKEGEISIVLEYMDGGSLADLLKKV-GKIPEPVLAYIARQILKGLDYLHT  117 (264)
T ss_pred             HHHHHHHHHhcC-----CCC--eeeEEEEEccCCeEEEEEEecCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHhc
Confidence            445555555443     222  22332  23346789999999999999875422 33444444433322  23678899


Q ss_pred             -CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          453 -HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       453 -~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                       .|++|+|++|+||+++.  ++.++|+|||+...+.......      ....+...+++++....+..+...|++++...
T Consensus       118 ~~~~~H~~l~~~ni~~~~--~~~~~l~df~~~~~~~~~~~~~------~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~i  189 (264)
T cd06623         118 KRHIIHRDIKPSNLLINS--KGEVKIADFGISKVLENTLDQC------NTFVGTVTYMSPERIQGESYSYAADIWSLGLT  189 (264)
T ss_pred             cCCCccCCCCHHHEEECC--CCCEEEccCccceecccCCCcc------cceeecccccCHhhhCCCCCCchhhHHHHHHH
Confidence             99999999999999986  8999999999998775433221      11224556777888777777778899999987


Q ss_pred             HHHHHH
Q 004234          532 AQFFLN  537 (766)
Q Consensus       532 i~~~l~  537 (766)
                      +.+++.
T Consensus       190 l~~l~t  195 (264)
T cd06623         190 LLECAL  195 (264)
T ss_pred             HHHHHh
Confidence            776653

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.39  E-value=2.7e-12  Score=140.18  Aligned_cols=86  Identities=15%  Similarity=0.064  Sum_probs=64.8

Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004234          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (766)
Q Consensus       445 ~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D  524 (766)
                      ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......    -.........++++++..-+..++..|
T Consensus       184 ~aL~~lH~~~ivHrDikp~Nill~~--~~~vkL~DfG~a~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~D  257 (337)
T cd05054         184 RGMEFLASRKCIHRDLAARNILLSE--NNVVKICDFGLARDIYKDPDYV----RKGDARLPLKWMAPESIFDKVYTTQSD  257 (337)
T ss_pred             HHHHHHHhCCeecCCCCcceEEEeC--CCcEEEeccccchhcccCcchh----hccCCCCCccccCcHHhcCCCCCcccc
Confidence            3477889999999999999999986  8899999999998875432110    011122345678888887777888899


Q ss_pred             HHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFL  536 (766)
Q Consensus       525 ~~~l~~~i~~~l  536 (766)
                      ++++...+.+++
T Consensus       258 i~SlGv~l~el~  269 (337)
T cd05054         258 VWSFGVLLWEIF  269 (337)
T ss_pred             HHHHHHHHHHHH
Confidence            999998776654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.39  E-value=4.5e-12  Score=131.92  Aligned_cols=181  Identities=20%  Similarity=0.154  Sum_probs=114.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||+|+.+......                                          .-.
T Consensus        15 ~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~------------------------------------------~~~   52 (267)
T cd06646          15 QRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDD------------------------------------------FSL   52 (267)
T ss_pred             heeecCCCeEEEEEEECCCCeEEEEEEEecCccch------------------------------------------HHH
Confidence            6799999999999998  68999999885332111                                          001


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~~  453 (766)
                      +.+|+..+..+     +++++ .+...+ ......++||||++|++|.++... ....+...+.....  ...+..+|..
T Consensus        53 ~~~e~~~l~~~-----~h~~ii~~~~~~-~~~~~~~iv~e~~~~~~L~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~  125 (267)
T cd06646          53 IQQEIFMVKEC-----KHCNIVAYFGSY-LSREKLWICMEYCGGGSLQDIYHV-TGPLSELQIAYVCRETLQGLAYLHSK  125 (267)
T ss_pred             HHHHHHHHHhc-----CCCCeeeeeEEE-EeCCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            23344433333     22222 222222 234567899999999999886532 22234333333222  2346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCCHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRR  530 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~---lG~~~~~~D~~~l~~  530 (766)
                      |++|+|++|+||+++.  ++.++++|||++..+.......      ....+...+++++...   .+..+...|++++..
T Consensus       126 ~i~H~dl~p~nill~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~  197 (267)
T cd06646         126 GKMHRDIKGANILLTD--NGDVKLADFGVAAKITATIAKR------KSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGI  197 (267)
T ss_pred             CccccCCCHHHEEECC--CCCEEECcCccceeeccccccc------CccccCccccCHhHcccccCCCCcchhhHHHHHH
Confidence            9999999999999985  7889999999998775322110      0112445567777653   233455689999887


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       198 il~el~  203 (267)
T cd06646         198 TAIELA  203 (267)
T ss_pred             HHHHHH
Confidence            666654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.39  E-value=2.2e-12  Score=137.80  Aligned_cols=189  Identities=17%  Similarity=0.112  Sum_probs=115.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.++.|++|.||+|+.  .++.|+||...++....                                 ...      .-+
T Consensus         7 ~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~---------------------------------~~~------~~~   47 (305)
T cd05609           7 KLISNGAYGAVYLVRHKETRQRFAMKKINKQNLIL---------------------------------RNQ------IQQ   47 (305)
T ss_pred             eEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhh---------------------------------HHH------HHH
Confidence            6799999999999998  58999999763321000                                 000      012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCC--eEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTP--QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~--~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~  452 (766)
                      +.+|.+.+..+     +++  .+++++..+++.  .++||||++|++|.++.... .......+...+.  -..+..+|.
T Consensus        48 ~~~e~~~l~~~-----~~~--~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~  119 (305)
T cd05609          48 VFVERDILTFA-----ENP--FVVSMFCSFETKRHLCMVMEYVEGGDCATLLKNI-GALPVDMARMYFAETVLALEYLHN  119 (305)
T ss_pred             HHHHHHHHHhC-----CCC--CeeeeEEEEecCCEEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            33444433332     223  445666544443  49999999999998875322 1223322222221  234788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHH---------HHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL---------EAFYGIYEKDADKVLQAMVQMGVLVPTG  523 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~---------~l~~a~~~~D~~~v~~~l~~lG~~~~~~  523 (766)
                      .|++|+|+||+||+++.  ++.++++|||++..........+.         ........+...+++++...-+..++..
T Consensus       120 ~~i~H~dl~p~NIll~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  197 (305)
T cd05609         120 YGIVHRDLKPDNLLITS--MGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPV  197 (305)
T ss_pred             CCccccCCchHHEEECC--CCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchh
Confidence            99999999999999985  889999999987632111000000         0000001234456677766556667788


Q ss_pred             CHHHHHHHHHHHH
Q 004234          524 DTTAVRRTAQFFL  536 (766)
Q Consensus       524 D~~~l~~~i~~~l  536 (766)
                      |++++...+.+++
T Consensus       198 Di~slG~vl~el~  210 (305)
T cd05609         198 DWWAMGIILYEFL  210 (305)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999987766554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.39  E-value=3.9e-12  Score=132.79  Aligned_cols=181  Identities=15%  Similarity=0.122  Sum_probs=119.3

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||.|++|.||+|++ ++..||||+.++.-..                                           +-+|
T Consensus        12 ~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~-------------------------------------------~~~~   48 (262)
T cd05071          12 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS-------------------------------------------PEAF   48 (262)
T ss_pred             eecCCCCCCcEEEEEecCCceEEEEecccCccC-------------------------------------------HHHH
Confidence            4699999999999998 4567999987431100                                           0134


Q ss_pred             HHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          378 TQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      .+|...+.++.     ++++ .+...+  .....+++|||++|++|.++.... ....+...+.....+  ..+..+|..
T Consensus        49 ~~E~~~l~~l~-----~~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~  121 (262)
T cd05071          49 LQEAQVMKKLR-----HEKLVQLYAVV--SEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM  121 (262)
T ss_pred             HHHHHHHHhCC-----CCCcceEEEEE--CCCCcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            55655555542     2322 222222  234579999999999998875422 122343443333322  336778999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|+||++++  ++.++|+|||.+..+.......     .....++..++.++....+..+...|++++...+.
T Consensus       122 ~i~H~dl~p~Nill~~--~~~~~L~dfg~~~~~~~~~~~~-----~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~  194 (262)
T cd05071         122 NYVHRDLRAANILVGE--NLVCKVADFGLARLIEDNEYTA-----RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLT  194 (262)
T ss_pred             CccccccCcccEEEcC--CCcEEeccCCceeecccccccc-----ccCCcccceecCHhHhccCCCCchhhHHHHHHHHH
Confidence            9999999999999986  8899999999998776433111     01112345678888877777777889999988776


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       195 ell  197 (262)
T cd05071         195 ELT  197 (262)
T ss_pred             HHH
Confidence            654

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.39  E-value=5.6e-12  Score=122.83  Aligned_cols=132  Identities=23%  Similarity=0.345  Sum_probs=96.6

Q ss_pred             cccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .+|++.|..++||+++..|+.|++|+..++..                                           ...++
T Consensus         3 ~~~l~~G~~~~vy~~~~~~~~~~lK~~~~~~~-------------------------------------------~~~~~   39 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVANKKYVVRIPGNGTE-------------------------------------------LLINR   39 (170)
T ss_pred             eeecCCcccCceEEEEECCeEEEEEeCCCCcc-------------------------------------------cccCH
Confidence            36899999999999999999999998754321                                           01245


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCC---
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHG---  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~G---  454 (766)
                      ..|++++..+.+.      ..+|+++....+..+++|||++|.++.+...     .+ ...... +...+..+|..+   
T Consensus        40 ~~E~~~l~~l~~~------~~~P~~~~~~~~~~~lv~e~i~G~~l~~~~~-----~~-~~~~~~-l~~~l~~LH~~~~~~  106 (170)
T cd05151          40 ENEAENSKLAAEA------GIGPKLYYFDPETGVLITEFIEGSELLTEDF-----SD-PENLEK-IAKLLKKLHSSPLPD  106 (170)
T ss_pred             HHHHHHHHHHHHh------CCCCceEEEeCCCCeEEEEecCCCccccccc-----cC-HHHHHH-HHHHHHHHhCCCCCC
Confidence            6777777777552      2368888876667899999999998875310     11 122222 334466778776   


Q ss_pred             --ccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004234          455 --FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       455 --ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (766)
                        ++|+|+||+||+++   +++++++|||.++.-++
T Consensus       107 ~~~~HgD~~~~Nil~~---~~~~~liDf~~a~~~~~  139 (170)
T cd05151         107 LVPCHNDLLPGNFLLD---DGRLWLIDWEYAGMNDP  139 (170)
T ss_pred             ceeecCCCCcCcEEEE---CCeEEEEecccccCCCh
Confidence              59999999999997   56899999999986543

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.39  E-value=4e-12  Score=134.20  Aligned_cols=183  Identities=16%  Similarity=0.146  Sum_probs=115.1

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||.|++|+||+|..  +|+.||||+..+.....-.                                       .+..+
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~---------------------------------------~~~~~   41 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQ---------------------------------------GETLA   41 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccch---------------------------------------hHHHH
Confidence            479999999999998  5899999987542111000                                       01112


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeec--cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e--~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      ..|...+..... . +++.+  +..+..  .....++||||++|+.|.+.... ...+....+...+.+  ..+..+|..
T Consensus        42 ~~~~~~~~~~~~-~-~~~~i--~~~~~~~~~~~~~~~v~e~~~g~~L~~~l~~-~~~l~~~~~~~~~~ql~~~l~~lH~~  116 (278)
T cd05606          42 LNERIMLSLVST-G-DCPFI--VCMSYAFHTPDKLSFILDLMNGGDLHYHLSQ-HGVFSEAEMRFYAAEIILGLEHMHNR  116 (278)
T ss_pred             HHHHHHHHHHHh-C-CCCcE--eeeeeeeecCCEEEEEEecCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            222222222221 1 22322  233222  23457899999999999876532 122344433333322  236778999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~~i  532 (766)
                      |++|+|++|.||+++.  ++.++++|||++..+......        ...+...++++++...+ ..+...|++++...+
T Consensus       117 ~i~H~di~p~nili~~--~~~~kl~dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l  186 (278)
T cd05606         117 FVVYRDLKPANILLDE--HGHVRISDLGLACDFSKKKPH--------ASVGTHGYMAPEVLQKGVAYDSSADWFSLGCML  186 (278)
T ss_pred             CEEcCCCCHHHEEECC--CCCEEEccCcCccccCccCCc--------CcCCCcCCcCcHHhcCCCCCCcccchHhHHHHH
Confidence            9999999999999985  789999999998876543221        11345667778877654 356778999998777


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       187 ~~l~  190 (278)
T cd05606         187 FKLL  190 (278)
T ss_pred             HHHH
Confidence            6655

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.39  E-value=1.2e-12  Score=149.48  Aligned_cols=178  Identities=14%  Similarity=0.033  Sum_probs=118.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..||.|++|.||+|+.  .++.||||.....                                                .
T Consensus       175 ~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~~------------------------------------------------~  206 (461)
T PHA03211        175 RALTPGSEGCVFESSHPDYPQRVVVKAGWYA------------------------------------------------S  206 (461)
T ss_pred             EEEccCCCeEEEEEEECCCCCEEEEeccccc------------------------------------------------C
Confidence            5799999999999999  4899999943100                                                1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++.     +++|.-..-+.......+|+||++.| .+.+........++...+...+.+  ..+..+|..|
T Consensus       207 ~~~E~~iL~~L~-----HpnIv~l~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~g  280 (461)
T PHA03211        207 SVHEARLLRRLS-----HPAVLALLDVRVVGGLTCLVLPKYRS-DLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGEG  280 (461)
T ss_pred             HHHHHHHHHHCC-----CCCCCcEEEEEEECCEEEEEEEccCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            123444444442     23332222222335667999999976 455443222223455554444433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.|||++.  ++.++|+|||++..+........    .....+...++++++..-+..+...|++++...+.+
T Consensus       281 IvHrDLKP~NILl~~--~~~vkL~DFGla~~~~~~~~~~~----~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~E  354 (461)
T PHA03211        281 IIHRDIKTENVLVNG--PEDICLGDFGAACFARGSWSTPF----HYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFE  354 (461)
T ss_pred             EEECcCCHHHEEECC--CCCEEEcccCCceeccccccccc----ccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHH
Confidence            999999999999985  78999999999987654322111    111246778888998877667778899999987776


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       355 l~  356 (461)
T PHA03211        355 AA  356 (461)
T ss_pred             HH
Confidence            54

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.39  E-value=1.1e-12  Score=137.35  Aligned_cols=186  Identities=20%  Similarity=0.262  Sum_probs=124.0

Q ss_pred             ccccccceeEEEEEeec------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +-||.|+||.||+|.+.      +..|+||+..+.....                                         
T Consensus         5 ~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~-----------------------------------------   43 (259)
T PF07714_consen    5 KQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEE-----------------------------------------   43 (259)
T ss_dssp             EEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHH-----------------------------------------
T ss_pred             eEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccc-----------------------------------------
Confidence            45899999999999996      6899999985532211                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~q  449 (766)
                      ..-+|.+|++.+.++     +++++.-..-+........++|||+++++|.++.... ...++...+...+.+  ..+..
T Consensus        44 ~~~~~~~e~~~l~~l-----~h~ni~~~~g~~~~~~~~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~  118 (259)
T PF07714_consen   44 EEEEFLNEIQILRKL-----RHPNIVKLYGFCIENEPLFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSY  118 (259)
T ss_dssp             HHHHHHHHHHHHHTH-----SBTTBE-EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHH
T ss_pred             cceeeeecccccccc-----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            122455566655554     2233332222323456689999999999999976543 344566665555444  34778


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..+++|+|++|.||+++.  ++.++|.|||+...........    ..........+++++...-+..+..+|+++|.
T Consensus       119 Lh~~~iiH~~l~~~nill~~--~~~~Kl~~f~~~~~~~~~~~~~----~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG  192 (259)
T PF07714_consen  119 LHSNNIIHGNLSPSNILLDS--NGQVKLSDFGLSRPISEKSKYK----NDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFG  192 (259)
T ss_dssp             HHHTTEEEST-SGGGEEEET--TTEEEEESTTTGEETTTSSSEE----ESTTSESGGGGS-HHHHHHSEESHHHHHHHHH
T ss_pred             cccccccccccccccccccc--cccccccccccccccccccccc----cccccccccccccccccccccccccccccccc
Confidence            99999999999999999986  8899999999998873221110    00111234566788888877778888999999


Q ss_pred             HHHHHHH
Q 004234          530 RTAQFFL  536 (766)
Q Consensus       530 ~~i~~~l  536 (766)
                      -.+.+++
T Consensus       193 ~~l~ei~  199 (259)
T PF07714_consen  193 MLLYEIL  199 (259)
T ss_dssp             HHHHHHH
T ss_pred             ccccccc
Confidence            8776655

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.39  E-value=3.3e-12  Score=132.22  Aligned_cols=177  Identities=16%  Similarity=0.167  Sum_probs=116.5

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.+|.|++|+||++..+|+.||+|+.+....                                      .      -.|.
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~~iK~~~~~~~--------------------------------------~------~~~~   47 (254)
T cd05083          12 EIIGEGEFGAVLQGEYTGQKVAVKNIKCDVT--------------------------------------A------QAFL   47 (254)
T ss_pred             eeeccCCCCceEecccCCCceEEEeecCcch--------------------------------------H------HHHH
Confidence            6799999999999998999999997632110                                      0      0233


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHH--HHHHHHHHhCCc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESYLEQILSHGF  455 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv--~~~l~qI~~~Gf  455 (766)
                      +|...+.++    .+..-+.+...+  .....+++|||++|++|.++..... ...+...+...+.  -..+..+|..|+
T Consensus        48 ~e~~~l~~~----~~~~i~~~~~~~--~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~  121 (254)
T cd05083          48 EETAVMTKL----HHKNLVRLLGVI--LHNGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKL  121 (254)
T ss_pred             HHHHHHHhC----CCCCcCeEEEEE--cCCCcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            444433333    222223333333  2345799999999999998754322 2234443333222  233678899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|++|+||+++.  ++.++|+|||.+.........         ......+++++....+..+...|++++...+.++
T Consensus       122 ~H~dl~p~nili~~--~~~~kl~Dfg~~~~~~~~~~~---------~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el  190 (254)
T cd05083         122 VHRDLAARNILVSE--DGVAKVSDFGLARVGSMGVDN---------SKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEV  190 (254)
T ss_pred             eccccCcceEEEcC--CCcEEECCCccceeccccCCC---------CCCCceecCHHHhccCCcCchhhHHHHHHHHHHH
Confidence            99999999999985  889999999998765432110         1123446677777767777788999998777665


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       191 ~  191 (254)
T cd05083         191 F  191 (254)
T ss_pred             H
Confidence            5

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.39  E-value=5.4e-12  Score=130.19  Aligned_cols=186  Identities=12%  Similarity=0.054  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +++|.|++|.||+|..  +|+.||||........                                  ....      -.
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~----------------------------------~~~~------~~   45 (257)
T cd08223           6 RVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNAS----------------------------------RRER------KA   45 (257)
T ss_pred             EEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcC----------------------------------HHHH------HH
Confidence            5789999999999998  5889999986211100                                  0000      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|...+.++    .+...+.+...+.......+++|||++|.++.+..... ....+...+...+.+  ..+..+|..
T Consensus        46 ~~~e~~~l~~l----~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~  121 (257)
T cd08223          46 AEQEAQLLSQL----KHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEK  121 (257)
T ss_pred             HHHHHHHHHhC----CCCCeeeeeeeecCCCCEEEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            23344333333    22222222222322233468999999999998865322 122444444333332  336789999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|.||+++.  ++.++|+|||++..+......      .....+.+.++++++...+..+...|++++...+.
T Consensus       122 ~i~H~di~p~nil~~~--~~~~~l~df~~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~  193 (257)
T cd08223         122 HILHRDLKTQNVFLTR--TNIIKVGDLGIARVLENQCDM------ASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVY  193 (257)
T ss_pred             CeeccCCCchhEEEec--CCcEEEecccceEEecccCCc------cccccCCcCccChhHhcCCCCCchhhhHHHHHHHH
Confidence            9999999999999985  889999999999876432210      01123456678888887777777889999987766


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       194 ~l~  196 (257)
T cd08223         194 EMA  196 (257)
T ss_pred             HHH
Confidence            554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.39  E-value=4e-12  Score=134.54  Aligned_cols=186  Identities=16%  Similarity=0.094  Sum_probs=117.0

Q ss_pred             ccccccceeEEEEEeec-------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||.|++|.||+|..+       +..||||.......                                         .
T Consensus        12 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-----------------------------------------~   50 (288)
T cd05061          12 RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESAS-----------------------------------------L   50 (288)
T ss_pred             eeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCC-----------------------------------------H
Confidence            67999999999999752       45899997632110                                         0


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------cCCCHHHHHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------LGVDRKRLGRYA  442 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------~g~d~~~la~~l  442 (766)
                      ....++.+|...+.++.     ++++....-+.......+++|||++|++|.+......         ...+...+...+
T Consensus        51 ~~~~~~~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  125 (288)
T cd05061          51 RERIEFLNEASVMKGFT-----CHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMA  125 (288)
T ss_pred             HHHHHHHHHHHHHHhCC-----CCCeeeEEEEEcCCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHH
Confidence            11224455555554442     2333222222233456799999999999998753211         111223333332


Q ss_pred             H--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004234          443 V--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (766)
Q Consensus       443 v--~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~  520 (766)
                      .  ...+..+|..|++|+|+||.||+++.  ++.++++|||++..+.......-    .........+++++...-+..+
T Consensus       126 ~~l~~~l~~lH~~~i~H~dikp~nili~~--~~~~~L~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~~pE~~~~~~~~  199 (288)
T cd05061         126 AEIADGMAYLNAKKFVHRDLAARNCMVAH--DFTVKIGDFGMTRDIYETDYYRK----GGKGLLPVRWMAPESLKDGVFT  199 (288)
T ss_pred             HHHHHHHHHHHhCCCcCCCCChheEEEcC--CCcEEECcCCccccccccccccc----cCCCcccccccCHHHhccCCCC
Confidence            2  23367889999999999999999986  88999999999886543221000    0001123457778877777777


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFFL  536 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~l  536 (766)
                      +..|++++...+.+++
T Consensus       200 ~~~DvwslG~~l~el~  215 (288)
T cd05061         200 TSSDMWSFGVVLWEIT  215 (288)
T ss_pred             hHhHHHHHHHHHHHHH
Confidence            8889999987766554

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.38  E-value=8.2e-12  Score=129.79  Aligned_cols=186  Identities=13%  Similarity=0.051  Sum_probs=119.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||..++-...                            +           ...+.+
T Consensus         8 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~----------------------------~-----------~~~~~~   48 (267)
T cd08228           8 KKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMM----------------------------D-----------AKARQD   48 (267)
T ss_pred             eeeccCCCeeEEEEEEeCCCCEEEEEEeeccccC----------------------------C-----------HHHHHH
Confidence            5799999999999998  6899999976321000                            0           011234


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-h--hcCCCHHHHHHHH--HHHHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-D--ELGVDRKRLGRYA--VESYLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~--~~g~d~~~la~~l--v~~~l~qI~  451 (766)
                      |.+|...+..+.     ++++.-+.-+.......+++|||++|++|.++... .  ....+...+...+  +...+..+|
T Consensus        49 ~~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH  123 (267)
T cd08228          49 CVKEIDLLKQLN-----HPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMH  123 (267)
T ss_pred             HHHHHHHHHhCC-----CcceeeeeeeEEECCeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            455555444432     23222221122234567999999999999886532 1  1123333333332  223367789


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|++|.||+++.  ++.++++|||++..+......      .....+...+++++.......+...|++++...
T Consensus       124 ~~~i~H~dl~~~nil~~~--~~~~~l~d~g~~~~~~~~~~~------~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~  195 (267)
T cd08228         124 SRRVMHRDIKPANVFITA--TGVVKLGDLGLGRFFSSKTTA------AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCL  195 (267)
T ss_pred             hCCeeCCCCCHHHEEEcC--CCCEEECccccceeccchhHH------HhcCCCCccccChhhhccCCCCchhhHHHHHHH
Confidence            999999999999999986  889999999999887653321      111235566777887765555667899998876


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       196 l~el~  200 (267)
T cd08228         196 LYEMA  200 (267)
T ss_pred             HHHHh
Confidence            66554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.38  E-value=1.5e-12  Score=141.08  Aligned_cols=183  Identities=19%  Similarity=0.216  Sum_probs=115.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +-||.|++|.||.|..  +|+..|||...-.  .                            .+.      .+.+.+|+.
T Consensus        23 ~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~--~----------------------------~~~------~~~l~~Ei~   66 (313)
T KOG0198|consen   23 KLLGRGSFGSVYLATNKKTGELMAVKSVELE--D----------------------------SPT------SESLEREIR   66 (313)
T ss_pred             ccccCccceEEEEEEecCCCcceeeeeeecc--c----------------------------chh------HHHHHHHHH
Confidence            5799999999999999  4999999965110  0                            000      223334433


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec---cC-CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWE---YT-TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e---~s-t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI  450 (766)
                      .      +.++    . +++  |.+.|..   .. ....+.|||++|++|.++.......+....+....  +-.-+.++
T Consensus        67 i------L~~l----~-~p~--IV~~~G~~~~~~~~~~~i~mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~yl  133 (313)
T KOG0198|consen   67 I------LSRL----N-HPN--IVQYYGSSSSRENDEYNIFMEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYL  133 (313)
T ss_pred             H------HHhC----C-CCC--EEeeCCccccccCeeeEeeeeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            2      2222    2 111  1111211   11 14789999999999999764332223433333222  33448889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC-CCCCHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV-PTGDTTAVR  529 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~-~~~D~~~l~  529 (766)
                      |.+||+|||+||.|||++. .++.++|.|||++..+......   .....-..+.+.+|+|+...-|... +..|+.++.
T Consensus       134 Hs~g~vH~DiK~~NiLl~~-~~~~~KlaDFG~a~~~~~~~~~---~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlG  209 (313)
T KOG0198|consen  134 HSKGIVHCDIKPANILLDP-SNGDVKLADFGLAKKLESKGTK---SDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLG  209 (313)
T ss_pred             HhCCEeccCcccceEEEeC-CCCeEEeccCcccccccccccc---ccccccccCCccccCchhhcCCCcCCccchhhhcC
Confidence            9999999999999999984 2589999999999988741000   0001123567899999999866433 478999887


Q ss_pred             HHHHH
Q 004234          530 RTAQF  534 (766)
Q Consensus       530 ~~i~~  534 (766)
                      -.+-+
T Consensus       210 CtVvE  214 (313)
T KOG0198|consen  210 CTVVE  214 (313)
T ss_pred             CEEEe
Confidence            65433

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.38  E-value=3.3e-12  Score=136.25  Aligned_cols=182  Identities=18%  Similarity=0.158  Sum_probs=120.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|.|++|.||+|+.  +|+.|++|.........                                          .-.
T Consensus        26 ~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~------------------------------------------~~~   63 (296)
T cd06654          26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK------------------------------------------KEL   63 (296)
T ss_pred             EEecCCCCeEEEEEEECCCCcEEEEEEEecCCcch------------------------------------------HHH
Confidence            5699999999999997  58999999763211100                                          012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|...+..+     +++++.-..-+.......++||||++|++|.++..  ....+...+...+.+  ..+..+|..|
T Consensus        64 ~~~e~~~l~~~-----~h~~v~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~i~~ql~~aL~~LH~~g  136 (296)
T cd06654          64 IINEILVMREN-----KNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT--ETCMDEGQIAAVCRECLQALEFLHSNQ  136 (296)
T ss_pred             HHHHHHHHHhC-----CCCCEeeEEEEEEeCCEEEEeecccCCCCHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33444433332     22333222112223457899999999999998753  222344444443322  3367789999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||+++.  ++.++++|||+...+.+.....      ....+.+.++++++...+..++..|++++...+.+
T Consensus       137 i~H~dLkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~  208 (296)
T cd06654         137 VIHRDIKSDNILLGM--DGSVKLTDFGFCAQITPEQSKR------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIE  208 (296)
T ss_pred             cccCCCCHHHEEEcC--CCCEEECccccchhcccccccc------CcccCCccccCHHHHcCCCCCccchHHHHHHHHHH
Confidence            999999999999985  8899999999988765543211      11234567788888877777788999999887766


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       209 l~~  211 (296)
T cd06654         209 MIE  211 (296)
T ss_pred             HHh
Confidence            653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.38  E-value=5.8e-12  Score=130.52  Aligned_cols=187  Identities=14%  Similarity=0.072  Sum_probs=117.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|..  +|+.||+|..++.-...                                 ..      ..-+
T Consensus         8 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---------------------------------~~------~~~~   48 (267)
T cd08224           8 KKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMD---------------------------------AK------ARQD   48 (267)
T ss_pred             eeeccCCceEEEEEEEcCCCCEEEEEEeecccccc---------------------------------hh------hHHH
Confidence            6799999999999999  59999999874311000                                 00      0112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-h--hcCCCHHHHHHHHHH--HHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-D--ELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~--~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      +.+|...+.++    .+ +++.-+.-+.......+++|||++|++|.++... .  ...++...+...+.+  ..+..+|
T Consensus        49 ~~~ei~~l~~~----~~-~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh  123 (267)
T cd08224          49 CLKEIDLLKQL----DH-PNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMH  123 (267)
T ss_pred             HHHHHHHHHhC----CC-CCeeeeeeeeecCCeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            33444433333    12 2222222122234567999999999999886432 1  122344444333333  2367789


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|++|.||+++.  ++.++++|||++..+........      ...+...+++++.......+...|++++...
T Consensus       124 ~~~i~h~dl~p~nil~~~--~~~~~l~d~~~~~~~~~~~~~~~------~~~~~~~y~apE~~~~~~~~~~~Di~slG~i  195 (267)
T cd08224         124 SKRIMHRDIKPANVFITA--TGVVKLGDLGLGRFFSSKTTAAH------SLVGTPYYMSPERIHENGYNFKSDIWSLGCL  195 (267)
T ss_pred             hCCEecCCcChhhEEECC--CCcEEEeccceeeeccCCCcccc------eecCCccccCHHHhccCCCCchhcHHHHHHH
Confidence            999999999999999986  88999999999887654322110      0123445667776665556677899999877


Q ss_pred             HHHHHH
Q 004234          532 AQFFLN  537 (766)
Q Consensus       532 i~~~l~  537 (766)
                      +.+++.
T Consensus       196 l~~l~~  201 (267)
T cd08224         196 LYEMAA  201 (267)
T ss_pred             HHHHHH
Confidence            766553

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.38  E-value=3.1e-12  Score=133.37  Aligned_cols=193  Identities=15%  Similarity=0.178  Sum_probs=120.0

Q ss_pred             ChhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004234          288 PLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (766)
Q Consensus       288 ~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (766)
                      +++..|...  +.+|.|++|+||+|..  +++.||||+....-..                                   
T Consensus         3 ~~~~~y~~~--~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~-----------------------------------   45 (272)
T cd06637           3 DPAGIFELV--ELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDE-----------------------------------   45 (272)
T ss_pred             ChhhhhhHH--HheeecCCeEEEEEEEcCCCcEEEEEEEEcCCcc-----------------------------------
Confidence            344555433  4699999999999998  5899999987321100                                   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-cccceeeec-----cCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHH
Q 004234          366 ECASVLYQEIDYTQEAANAELFASNFKDMDY-VKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRL  438 (766)
Q Consensus       366 E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e-----~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~l  438 (766)
                              +.++..|...+.++.    ++++ +.+...+..     .....+++|||+.|++|.++..... ..+....+
T Consensus        46 --------~~~~~~e~~~l~~~~----~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~  113 (272)
T cd06637          46 --------EEEIKQEINMLKKYS----HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWI  113 (272)
T ss_pred             --------HHHHHHHHHHHHHhc----CCCCeeeEeeEEeecCCCCCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHH
Confidence                    112333333333331    1222 222222221     1234689999999999998654322 22343333


Q ss_pred             HHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004234          439 GRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (766)
Q Consensus       439 a~~l--v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l  516 (766)
                      ....  +...+..+|..|++|+|+||+||++++  ++.++++|||++..+.......      ....+...++++++...
T Consensus       114 ~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~--~~~~~l~Dfg~~~~~~~~~~~~------~~~~g~~~y~aPE~~~~  185 (272)
T cd06637         114 AYICREILRGLSHLHQHKVIHRDIKGQNVLLTE--NAEVKLVDFGVSAQLDRTVGRR------NTFIGTPYWMAPEVIAC  185 (272)
T ss_pred             HHHHHHHHHHHHHHHHCCCccCCCCHHHEEECC--CCCEEEccCCCceecccccccC------CcccccccccCHhHhcc
Confidence            3332  223467899999999999999999986  7899999999988765432211      11224556777877652


Q ss_pred             -----CCCCCCCCHHHHHHHHHHHHH
Q 004234          517 -----GVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       517 -----G~~~~~~D~~~l~~~i~~~l~  537 (766)
                           +..+...|++++...+.+++.
T Consensus       186 ~~~~~~~~~~~~Dv~slGv~l~el~~  211 (272)
T cd06637         186 DENPDATYDFKSDLWSLGITAIEMAE  211 (272)
T ss_pred             ccCcCCCCCchhhHHHHHHHHHHHHh
Confidence                 234556899999877766653

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.38  E-value=4.1e-12  Score=132.79  Aligned_cols=183  Identities=16%  Similarity=0.091  Sum_probs=113.3

Q ss_pred             cccccceeEEEEEee-c---CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL-K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       300 PIgsaSiGQVhrA~l-~---G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      .||+|++|.||+|.+ +   +..||+|..+.....                                         ..+.
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~-----------------------------------------~~~~   40 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASV-----------------------------------------QEQM   40 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCCh-----------------------------------------HHHH
Confidence            589999999999987 2   467999976432110                                         1233


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhc----CCCHHHHHHHH--HHHHH
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL----GVDRKRLGRYA--VESYL  447 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~----g~d~~~la~~l--v~~~l  447 (766)
                      +|.+|...+.++.     +++  +++++.  ...+..++||||++|++|.++......    ..+...+...+  +...+
T Consensus        41 ~~~~E~~~l~~l~-----h~~--iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al  113 (269)
T cd05087          41 KFLEEAQPYRSLQ-----HSN--LLQCLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGL  113 (269)
T ss_pred             HHHHHHHHHHhCC-----CCC--EeeEEEEEcCCCCcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHH
Confidence            5666666555542     233  233332  234567999999999999886532111    12222222221  22346


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-------CCC
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-------VLV  520 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-------~~~  520 (766)
                      ..+|..|++|+|+||.||+++.  ++.++++|||++...........    .....+...++++++....       ..+
T Consensus       114 ~~lH~~~i~H~dlkp~nil~~~--~~~~kL~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~~~~  187 (269)
T cd05087         114 LHLHKNNFIHSDLALRNCLLTA--DLTVKIGDYGLSHNKYKEDYYVT----PDQLWVPLRWIAPELVDEVHGNLLVVDQT  187 (269)
T ss_pred             HHHHHCCEeccccCcceEEEcC--CCcEEECCccccccccCcceeec----CCCcCCcccccCHhHhccccccccccCCC
Confidence            7789999999999999999986  78999999998865433211000    0001123456777776521       135


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFFL  536 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~l  536 (766)
                      ...|++++...+.+++
T Consensus       188 ~~~DiwslG~~l~el~  203 (269)
T cd05087         188 KESNVWSLGVTIWELF  203 (269)
T ss_pred             ccchhHHHHHHHHHHH
Confidence            5789999987766554

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.38  E-value=2.7e-12  Score=142.35  Aligned_cols=86  Identities=15%  Similarity=0.090  Sum_probs=64.1

Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004234          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (766)
Q Consensus       445 ~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D  524 (766)
                      ..+..+|..|++|+|++|.||++++  ++.++|+|||++..+.......    ..+.......+++++....+..++..|
T Consensus       223 ~aL~yLH~~giiHrDLkp~Nil~~~--~~~~kL~DfGla~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~D  296 (374)
T cd05106         223 QGMDFLASKNCIHRDVAARNVLLTD--GRVAKICDFGLARDIMNDSNYV----VKGNARLPVKWMAPESIFDCVYTVQSD  296 (374)
T ss_pred             HHHHHHHHCCEEeccCchheEEEeC--CCeEEEeeceeeeeccCCccee----eccCCCCccceeCHHHhcCCCCCcccc
Confidence            3477889999999999999999985  8899999999998764432111    011112234578888887777888999


Q ss_pred             HHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFL  536 (766)
Q Consensus       525 ~~~l~~~i~~~l  536 (766)
                      ++++...+.+++
T Consensus       297 vwSlGvil~ell  308 (374)
T cd05106         297 VWSYGILLWEIF  308 (374)
T ss_pred             HHHHHHHHHHHH
Confidence            999988776654

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.38  E-value=3.3e-12  Score=135.24  Aligned_cols=182  Identities=16%  Similarity=0.196  Sum_probs=115.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.|++|+......+.                                          .-+
T Consensus        18 ~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~------------------------------------------~~~   55 (292)
T cd06644          18 GELGDGAFGKVYKAKNKETGALAAAKVIETKSEEE------------------------------------------LED   55 (292)
T ss_pred             heecCCCCeEEEEEEECCCCceEEEEEeccCCHHH------------------------------------------HHH
Confidence            4599999999999998  48999999874321110                                          113


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +..|...+..+.     ++++ .+...+ ...+..+++|||++|+.+..+.......++...+...+.+  ..+..+|..
T Consensus        56 ~~~e~~~l~~l~-----h~~i~~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~  129 (292)
T cd06644          56 YMVEIEILATCN-----HPYIVKLLGAF-YWDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSM  129 (292)
T ss_pred             HHHHHHHHHhCC-----CCcEeeeEEEE-EeCCeEEEEEecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            444555444432     2222 222222 3456789999999999998754322333454444333322  346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCCHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTTAV  528 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-----G~~~~~~D~~~l  528 (766)
                      |++|+|+||.||+++.  ++.++|+|||++..........      ....++..++++++...     ...+...|++++
T Consensus       130 ~i~H~dlkp~Nili~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~sl  201 (292)
T cd06644         130 KIIHRDLKAGNVLLTL--DGDIKLADFGVSAKNVKTLQRR------DSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSL  201 (292)
T ss_pred             CeeecCCCcceEEEcC--CCCEEEccCccceecccccccc------ceecCCccccCceeeccccccCCCCCchhhhHhH
Confidence            9999999999999985  8899999999887643321110      01123455667766532     223446799999


Q ss_pred             HHHHHHHH
Q 004234          529 RRTAQFFL  536 (766)
Q Consensus       529 ~~~i~~~l  536 (766)
                      ...+.+++
T Consensus       202 G~il~el~  209 (292)
T cd06644         202 GITLIEMA  209 (292)
T ss_pred             HHHHHHHh
Confidence            87776654

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.38  E-value=4.8e-12  Score=131.76  Aligned_cols=182  Identities=21%  Similarity=0.204  Sum_probs=116.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||+|+.+.......                                    .      .
T Consensus        15 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~------------------------------------~------~   52 (267)
T cd06645          15 QRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDF------------------------------------A------V   52 (267)
T ss_pred             HHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHH------------------------------------H------H
Confidence            5799999999999998  589999998854321110                                    0      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|...+..+    .+..-+.+...+ ......+++|||++|++|.++.... ...+...+.....+  ..+..+|..|
T Consensus        53 ~~~e~~~~~~l----~h~~ii~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~  126 (267)
T cd06645          53 VQQEIIMMKDC----KHSNIVAYFGSY-LRRDKLWICMEFCGGGSLQDIYHVT-GPLSESQIAYVSRETLQGLYYLHSKG  126 (267)
T ss_pred             HHHHHHHHHhC----CCCCeeeEEEEE-EeCCEEEEEEeccCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22233222222    221112222222 2345679999999999999865322 23444444433332  3367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCCHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRRT  531 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~---lG~~~~~~D~~~l~~~  531 (766)
                      ++|+|++|+||+++.  ++.++++|||++..+.......      ....++..+++++...   .+......|++++...
T Consensus       127 i~H~dlkp~nili~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~i  198 (267)
T cd06645         127 KMHRDIKGANILLTD--NGHVKLADFGVSAQITATIAKR------KSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGIT  198 (267)
T ss_pred             eecCCCCHHHEEECC--CCCEEECcceeeeEccCccccc------ccccCcccccChhhhccccCCCCCchhhhHHHHHH
Confidence            999999999999985  7899999999988765422110      1113456677888763   3445667899999876


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       199 l~~l~  203 (267)
T cd06645         199 AIELA  203 (267)
T ss_pred             HHHHh
Confidence            65543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.38  E-value=3.2e-12  Score=133.37  Aligned_cols=188  Identities=16%  Similarity=0.166  Sum_probs=118.5

Q ss_pred             ccccccceeEEEEEee--cC---eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KG---EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G---~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +-+|.|++|.||+|.+  +|   ..||||+......+.                                   .      
T Consensus        10 ~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~------   48 (269)
T cd05065          10 EVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEK-----------------------------------Q------   48 (269)
T ss_pred             eEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHH-----------------------------------H------
Confidence            5699999999999998  34   369999874332111                                   0      


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      .-+|..|+..+..+     +++++.-..-+..-....+++|||++|++|.++.......++...+...+.+  ..+..+|
T Consensus        49 ~~~~~~e~~~l~~l-----~h~ni~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH  123 (269)
T cd05065          49 RRDFLSEASIMGQF-----DHPNIIHLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLS  123 (269)
T ss_pred             HHHHHHHHHHHHhC-----CCcCcceEEEEECCCCceEEEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            01344455544443     2233322222223345679999999999998876443333455544443332  3467889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG-LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~-l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      ..|++|+|+||.||+++.  ++.+++.|||....+....... +.... + ......++.++...-+..+...|++++..
T Consensus       124 ~~g~~H~dl~p~nili~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~-~-~~~~~~y~~PE~~~~~~~~~~~DvwslG~  199 (269)
T cd05065         124 EMNYVHRDLAARNILVNS--NLVCKVSDFGLSRFLEDDTSDPTYTSSL-G-GKIPIRWTAPEAIAYRKFTSASDVWSYGI  199 (269)
T ss_pred             HCCEeecccChheEEEcC--CCcEEECCCccccccccCcccccccccc-C-CCcceeecCHhHhccCcccchhhhhhhHH
Confidence            999999999999999985  7899999999987664422111 00000 0 00123466777776666677889999887


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       200 ~l~e~l  205 (269)
T cd05065         200 VMWEVM  205 (269)
T ss_pred             HHHHHh
Confidence            665543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.38  E-value=2e-12  Score=144.63  Aligned_cols=176  Identities=12%  Similarity=0.065  Sum_probs=114.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|..  +|+.||||+...                                          .      .
T Consensus        98 ~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~------------------------------------------~------~  129 (391)
T PHA03212         98 ETFTPGAEGFAFACIDNKTCEHVVIKAGQR------------------------------------------G------G  129 (391)
T ss_pred             EEEcCCCCeEEEEEEECCCCCEEEEechhh------------------------------------------h------h
Confidence            6799999999999998  589999995310                                          0      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|++.+.++    .+ ++| .+-..+ ......+++||++.| .+.+... ....++...+.....+  ..+..+|..
T Consensus       130 ~~~E~~il~~l----~H-pnIv~~~~~~-~~~~~~~lv~e~~~~-~L~~~l~-~~~~l~~~~~~~i~~qi~~aL~ylH~~  201 (391)
T PHA03212        130 TATEAHILRAI----NH-PSIIQLKGTF-TYNKFTCLILPRYKT-DLYCYLA-AKRNIAICDILAIERSVLRAIQYLHEN  201 (391)
T ss_pred             hHHHHHHHHhC----CC-CCCCCEeEEE-EECCeeEEEEecCCC-CHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            22344444443    22 332 222222 345667999999975 4544332 1223444433333322  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||+||+++.  ++.++|+|||++...........     .-..+.+.++++++...+..++..|++++...+.
T Consensus       202 ~IvHrDiKP~NIll~~--~~~vkL~DFG~a~~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~  274 (391)
T PHA03212        202 RIIHRDIKAENIFINH--PGDVCLGDFGAACFPVDINANKY-----YGWAGTIATNAPELLARDPYGPAVDIWSAGIVLF  274 (391)
T ss_pred             CcccCCCChHhEEEcC--CCCEEEEeCCccccccccccccc-----ccccCccCCCChhhhcCCCCCcHHHHHHHHHHHH
Confidence            9999999999999985  78999999999865432211111     1123566777888877666777889999998887


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       275 ellt  278 (391)
T PHA03212        275 EMAT  278 (391)
T ss_pred             HHHH
Confidence            7664

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.38  E-value=5.4e-12  Score=131.19  Aligned_cols=182  Identities=15%  Similarity=0.122  Sum_probs=117.9

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      ..||+|++|+||+|.+ .+..||+|+.+++-..                                           +-+|
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~-------------------------------------------~~~~   48 (260)
T cd05069          12 VKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMM-------------------------------------------PEAF   48 (260)
T ss_pred             eeecCcCCCeEEEEEEcCCceEEEEEcccCCcc-------------------------------------------HHHH
Confidence            5799999999999998 4568999987543110                                           0123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHH--HHHHHHHHhCC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESYLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv--~~~l~qI~~~G  454 (766)
                      .+|.+.+.++    .+...+.+...+  .....+++|||++|++|.++..... ...+...+.....  -..+..+|..|
T Consensus        49 ~~E~~~l~~l----~h~~i~~~~~~~--~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~  122 (260)
T cd05069          49 LQEAQIMKKL----RHDKLVPLYAVV--SEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMN  122 (260)
T ss_pred             HHHHHHHHhC----CCCCeeeEEEEE--cCCCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            4454444433    222223333333  2355799999999999988654221 1233333333222  23467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|+||++++  ++.++|+|||.+..+........     .-......+++++....+..+...|++++...+.+
T Consensus       123 i~H~dl~~~Nill~~--~~~~~l~dfg~~~~~~~~~~~~~-----~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~e  195 (260)
T cd05069         123 YIHRDLRAANILVGD--NLVCKIADFGLARLIEDNEYTAR-----QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE  195 (260)
T ss_pred             EeecccCcceEEEcC--CCeEEECCCccceEccCCccccc-----CCCccchhhCCHHHhccCCcChHHHHHHHHHHHHH
Confidence            999999999999986  88999999999987654321110     00122345777777776777778899999877766


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       196 l~  197 (260)
T cd05069         196 LV  197 (260)
T ss_pred             HH
Confidence            54

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.38  E-value=3.8e-12  Score=133.73  Aligned_cols=185  Identities=14%  Similarity=0.109  Sum_probs=122.1

Q ss_pred             ccccccceeEEEEEee--cCe----eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~----~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.||+|++|+||+|.+  +|+    .|++|+..+....                                         .
T Consensus        13 ~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~-----------------------------------------~   51 (279)
T cd05057          13 KVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSP-----------------------------------------K   51 (279)
T ss_pred             ceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCH-----------------------------------------H
Confidence            6899999999999998  343    6899976433210                                         0


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      ....+.+|+..+.++.    +..-+.+....  .+...+++|||++|++|.+.........+...+...+.+  ..+..+
T Consensus        52 ~~~~~~~e~~~l~~l~----h~~i~~~~~~~--~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~L  125 (279)
T cd05057          52 ANKEILDEAYVMASVD----HPHVVRLLGIC--LSSQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYL  125 (279)
T ss_pred             HHHHHHHHHHHHHhCC----CCCcceEEEEE--ecCceEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            1124556666665542    22222222222  237789999999999999875433333555555444433  346788


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|++|.||+++.  ++.++|+|||++..+........    ..-......++.++....+..+...|.+++..
T Consensus       126 H~~~i~H~di~p~nil~~~--~~~~kL~dfg~~~~~~~~~~~~~----~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~  199 (279)
T cd05057         126 EEKRLVHRDLAARNVLVKT--PQHVKITDFGLAKLLDVDEKEYH----AEGGKVPIKWMALESILHRIYTHKSDVWSYGV  199 (279)
T ss_pred             HhCCEEecccCcceEEEcC--CCeEEECCCcccccccCccccee----cCCCcccccccCHHHhhcCCcCchhhHHHHHH
Confidence            9999999999999999985  78999999999987764322110    00011134567777777677777889999987


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       200 ~l~el~  205 (279)
T cd05057         200 TVWELM  205 (279)
T ss_pred             HHHHHh
Confidence            666554

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>PHA02988 hypothetical protein; Provisional

Probab=99.38  E-value=6.9e-12  Score=133.32  Aligned_cols=183  Identities=10%  Similarity=0.018  Sum_probs=119.9

Q ss_pred             CcccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       297 d~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +...++.|+++.||+|.++|+.||||+.+..-...                             ..++          -+
T Consensus        24 ~~~~i~~g~~~~v~~~~~~~~~vavK~~~~~~~~~-----------------------------~~~~----------~~   64 (283)
T PHA02988         24 TSVLIKENDQNSIYKGIFNNKEVIIRTFKKFHKGH-----------------------------KVLI----------DI   64 (283)
T ss_pred             CCeEEeeCCceEEEEEEECCEEEEEEecccccccc-----------------------------HHHH----------HH
Confidence            34679999999999999999999999874321100                             0000          13


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee---c---cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW---E---YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~---e---~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~  448 (766)
                      |.+|+..+.++.    + +  .+.+.+.   +   -....+++|||++|++|.++.... ...+.......+.+  ..+.
T Consensus        65 ~~~E~~~l~~l~----h-~--nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~-~~~~~~~~~~i~~~i~~~l~  136 (283)
T PHA02988         65 TENEIKNLRRID----S-N--NILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDKE-KDLSFKTKLDMAIDCCKGLY  136 (283)
T ss_pred             HHHHHHHHHhcC----C-C--CEEEEeeeEEecccCCCceEEEEEeCCCCcHHHHHhhC-CCCChhHHHHHHHHHHHHHH
Confidence            455666666653    2 2  2333332   2   123568999999999999875422 22333333333222  2366


Q ss_pred             HHHh-CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc--CCCCCCCCH
Q 004234          449 QILS-HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM--GVLVPTGDT  525 (766)
Q Consensus       449 qI~~-~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l--G~~~~~~D~  525 (766)
                      .+|. .|++|+|++|.||+++.  ++.++++|||++..++.....         ..+...++++++..-  +..+...|+
T Consensus       137 ~lH~~~~~~Hrdlkp~nill~~--~~~~kl~dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~k~Di  205 (283)
T PHA02988        137 NLYKYTNKPYKNLTSVSFLVTE--NYKLKIICHGLEKILSSPPFK---------NVNFMVYFSYKMLNDIFSEYTIKDDI  205 (283)
T ss_pred             HHHhcCCCCCCcCChhhEEECC--CCcEEEcccchHhhhcccccc---------ccCcccccCHHHhhhccccccchhhh
Confidence            7786 59999999999999986  889999999998866543211         123455667777653  456778899


Q ss_pred             HHHHHHHHHHHH
Q 004234          526 TAVRRTAQFFLN  537 (766)
Q Consensus       526 ~~l~~~i~~~l~  537 (766)
                      +++...+.+++.
T Consensus       206 ~SlGvil~el~~  217 (283)
T PHA02988        206 YSLGVVLWEIFT  217 (283)
T ss_pred             hHHHHHHHHHHH
Confidence            999987776654

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.38  E-value=7.1e-12  Score=134.10  Aligned_cols=182  Identities=15%  Similarity=0.166  Sum_probs=113.6

Q ss_pred             ccccccceeEEEEEee--cCeeE--EEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEV--VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~V--AVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      +.||.|++|+||+|++  +|..+  ++|.......+.                                   .      .
T Consensus        13 ~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------~------~   51 (303)
T cd05088          13 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD-----------------------------------D------H   51 (303)
T ss_pred             eeecCCCCceEEEEEEccCCceeeEEEEEecccCCHH-----------------------------------H------H
Confidence            6899999999999998  46554  555432211100                                   0      1


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceee--eccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCHHH
Q 004234          375 IDYTQEAANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKR  437 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V~vP~v~--~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~~~  437 (766)
                      -++.+|...+.++.    ++++  +++++  ....+..+++|||++|++|.++.....               ..++...
T Consensus        52 ~~~~~Ei~~l~~l~----~h~~--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  125 (303)
T cd05088          52 RDFAGELEVLCKLG----HHPN--IINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ  125 (303)
T ss_pred             HHHHHHHHHHHHhc----CCCC--cceEEEEECCCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHH
Confidence            12334444444432    2333  33333  234566799999999999988653211               1133333


Q ss_pred             HHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004234          438 LGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (766)
Q Consensus       438 la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~  515 (766)
                      +...+.+  ..+..+|..|++|+|++|.||+++.  ++.++|+|||++..........       .......+++++...
T Consensus       126 ~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~--~~~~kl~dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~  196 (303)
T cd05088         126 LLHFAADVARGMDYLSQKQFIHRDLAARNILVGE--NYVAKIADFGLSRGQEVYVKKT-------MGRLPVRWMAIESLN  196 (303)
T ss_pred             HHHHHHHHHHHHHHHHhCCccccccchheEEecC--CCcEEeCccccCcccchhhhcc-------cCCCcccccCHHHHh
Confidence            3333322  3367889999999999999999986  8899999999986432111100       001123467777776


Q ss_pred             cCCCCCCCCHHHHHHHHHHHH
Q 004234          516 MGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       516 lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ....++..|++++...+.+++
T Consensus       197 ~~~~~~~~Di~slG~il~ell  217 (303)
T cd05088         197 YSVYTTNSDVWSYGVLLWEIV  217 (303)
T ss_pred             ccCCcccccchhhhhHHHHHH
Confidence            666778899999988777665

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.38  E-value=3.1e-12  Score=133.26  Aligned_cols=190  Identities=19%  Similarity=0.174  Sum_probs=116.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||+|++|+||+|+.  +|+.|++|+..+.....                                  +     ..+-.
T Consensus         7 ~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~-----~~~~~   47 (280)
T cd05581           7 KIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIK----------------------------------E-----KKVKY   47 (280)
T ss_pred             eeecCCCceEEEEEEEcCCCCEEEEEEechHhccc----------------------------------h-----HHHHH
Confidence            5899999999999999  69999999874311000                                  0     00112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      +..|...+.++.    ++++  +++++.  ...+..+++|||++|++|.+..... ..++...+.....+  ..+..+|.
T Consensus        48 ~~~e~~~~~~l~----~~~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~i~~ql~~~l~~Lh~  120 (280)
T cd05581          48 VKIEKEVLTRLN----GHPG--IIKLYYTFQDEENLYFVLEYAPNGELLQYIRKY-GSLDEKCTRFYAAEILLALEYLHS  120 (280)
T ss_pred             HHHHHHHHHhcc----cCCC--chhHHHHhcCCceEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            233333333221    1121  222221  1235679999999999998865322 23444444333322  33677899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHH--------------HHHHHhhcCHHHHHHHHHHcCC
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE--------------AFYGIYEKDADKVLQAMVQMGV  518 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~--------------l~~a~~~~D~~~v~~~l~~lG~  518 (766)
                      .|++|+|++|.||+++.  ++.++++|||++..+..........              .......+...++.++....+.
T Consensus       121 ~~~~H~dl~~~ni~i~~--~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~  198 (280)
T cd05581         121 KGIIHRDLKPENILLDK--DMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKP  198 (280)
T ss_pred             CCeeecCCCHHHeEECC--CCCEEecCCccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCC
Confidence            99999999999999985  8999999999998876543210000              0001112345566777766666


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004234          519 LVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       519 ~~~~~D~~~l~~~i~~~l  536 (766)
                      .+...|++++...+..++
T Consensus       199 ~~~~~Di~slG~~l~~l~  216 (280)
T cd05581         199 AGKSSDLWALGCIIYQML  216 (280)
T ss_pred             CChhhhHHHHHHHHHHHH
Confidence            667788888876555443

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.38  E-value=1.6e-12  Score=145.53  Aligned_cols=183  Identities=16%  Similarity=0.176  Sum_probs=132.8

Q ss_pred             cccccceeEEEEEeecCe-eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARLKGE-EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       300 PIgsaSiGQVhrA~l~G~-~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      -||+|-||.||.|.++|. +||||.++++.-                                           .+-+|.
T Consensus       213 ~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m-------------------------------------------~~~~f~  249 (468)
T KOG0197|consen  213 ELGSGQFGEVWLGKWNGSTKVAVKTIKEGSM-------------------------------------------SPEAFL  249 (468)
T ss_pred             HhcCCccceEEEEEEcCCCcccceEEecccc-------------------------------------------ChhHHH
Confidence            589999999999999876 999999977621                                           123677


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHHHH--HHHHHhCCc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVESY--LEQILSHGF  455 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~lv~~~--l~qI~~~Gf  455 (766)
                      .||+-|.++++    ..-|..-.|. ......+|||||++-++|.++... ....++..++.....+.+  +..+-++++
T Consensus       250 ~Ea~iMk~L~H----~~lV~l~gV~-~~~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~  324 (468)
T KOG0197|consen  250 REAQIMKKLRH----EKLVKLYGVC-TKQEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNY  324 (468)
T ss_pred             HHHHHHHhCcc----cCeEEEEEEE-ecCCceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCc
Confidence            89988887753    2222222222 122347999999999999998654 344466677776666655  667779999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|||+-..||||++  +..+++.||||++.+.++....     ..-.+--+..-+|+.+..|..+..+|+.+|.-.+.++
T Consensus       325 IHRDLAARNiLV~~--~~~vKIsDFGLAr~~~d~~Y~~-----~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~  397 (468)
T KOG0197|consen  325 IHRDLAARNILVDE--DLVVKISDFGLARLIGDDEYTA-----SEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWEL  397 (468)
T ss_pred             cchhhhhhheeecc--CceEEEcccccccccCCCceee-----cCCCCCCceecCHHHHhhCCcccccceeehhhhHHHH
Confidence            99999999999986  8899999999999665543211     0001122455678888888889999999999877766


Q ss_pred             HH
Q 004234          536 LN  537 (766)
Q Consensus       536 l~  537 (766)
                      +.
T Consensus       398 fT  399 (468)
T KOG0197|consen  398 FT  399 (468)
T ss_pred             hc
Confidence            54

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.38  E-value=1.5e-12  Score=145.56  Aligned_cols=175  Identities=16%  Similarity=0.167  Sum_probs=125.9

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +=+|+|+.|.||+|+++++.||||-.    .+.-+.|++-|+                                      
T Consensus       130 eWlGSGaQGAVF~Grl~netVAVKKV----~elkETdIKHLR--------------------------------------  167 (904)
T KOG4721|consen  130 EWLGSGAQGAVFLGRLHNETVAVKKV----RELKETDIKHLR--------------------------------------  167 (904)
T ss_pred             hhhccCcccceeeeeccCceehhHHH----hhhhhhhHHHHH--------------------------------------
Confidence            56899999999999999999999943    333333443333                                      


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  456 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~Gff  456 (766)
                             ++.     +++|.--+-+..-+--.+++||||.-+.|..+.... ..+.+..++...  +..-++++|.|.++
T Consensus       168 -------kLk-----H~NII~FkGVCtqsPcyCIiMEfCa~GqL~~VLka~-~~itp~llv~Wsk~IA~GM~YLH~hKII  234 (904)
T KOG4721|consen  168 -------KLK-----HPNIITFKGVCTQSPCYCIIMEFCAQGQLYEVLKAG-RPITPSLLVDWSKGIAGGMNYLHLHKII  234 (904)
T ss_pred             -------hcc-----CcceeeEeeeecCCceeEEeeeccccccHHHHHhcc-CccCHHHHHHHHHHhhhhhHHHHHhhHh
Confidence                   221     122222222211122248999999999999876432 335666666543  44558889999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      |+|+|.-||||..  +..|+|.|||-...+++.- .   .+   -+.++...|++++++..-.+.+.|+++|...+-++|
T Consensus       235 HRDLKSPNiLIs~--~d~VKIsDFGTS~e~~~~S-T---kM---SFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmL  305 (904)
T KOG4721|consen  235 HRDLKSPNILISY--DDVVKISDFGTSKELSDKS-T---KM---SFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEML  305 (904)
T ss_pred             hhccCCCceEeec--cceEEeccccchHhhhhhh-h---hh---hhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHH
Confidence            9999999999996  7889999999998887641 1   11   135789999999999998899999999998776665


Q ss_pred             H
Q 004234          537 N  537 (766)
Q Consensus       537 ~  537 (766)
                      .
T Consensus       306 T  306 (904)
T KOG4721|consen  306 T  306 (904)
T ss_pred             h
Confidence            3

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.37  E-value=7.7e-12  Score=131.30  Aligned_cols=182  Identities=15%  Similarity=0.161  Sum_probs=117.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|.+  +++.||+|+.+......                                          .-+
T Consensus        11 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~------------------------------------------~~~   48 (280)
T cd06611          11 GELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEE------------------------------------------LED   48 (280)
T ss_pred             HHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHH------------------------------------------HHH
Confidence            4699999999999998  58999999874321110                                          113


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      |..|+..+.++.     ++++ .+...+ ......++||||++|+.|.++.......++...+...+.+  ..+..+|..
T Consensus        49 ~~~e~~~l~~l~-----h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~  122 (280)
T cd06611          49 FMVEIDILSECK-----HPNIVGLYEAY-FYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSH  122 (280)
T ss_pred             HHHHHHHHHhCC-----CCceeEEEEEE-ecCCeEEEEeeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            445555444432     2322 222222 2345679999999999998875432233444444433332  336778999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-----CCCCCCCHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-----VLVPTGDTTAV  528 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-----~~~~~~D~~~l  528 (766)
                      |++|+|++|.||+++.  ++.++++|||+...........      ....+.+.++.+++...+     ..+...|++++
T Consensus       123 ~i~h~dl~p~nili~~--~~~~~l~d~g~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~sl  194 (280)
T cd06611         123 KVIHRDLKAGNILLTL--DGDVKLADFGVSAKNKSTLQKR------DTFIGTPYWMAPEVVACETFKDNPYDYKADIWSL  194 (280)
T ss_pred             CcccCCCChhhEEECC--CCCEEEccCccchhhccccccc------ceeecchhhcCHHHHhhcccCCCCCCccccHHHH
Confidence            9999999999999986  8999999999887654332211      012245567777776422     23456899999


Q ss_pred             HHHHHHHH
Q 004234          529 RRTAQFFL  536 (766)
Q Consensus       529 ~~~i~~~l  536 (766)
                      ...+.+++
T Consensus       195 G~il~~l~  202 (280)
T cd06611         195 GITLIELA  202 (280)
T ss_pred             HHHHHHHH
Confidence            87665544

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.37  E-value=5.3e-12  Score=130.50  Aligned_cols=184  Identities=15%  Similarity=0.077  Sum_probs=119.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|.|++|+||.+..  +|+.||+|..+-.....                                  +       .-+
T Consensus         6 ~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~----------------------------------~-------~~~   44 (255)
T cd08219           6 RVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSS----------------------------------A-------VED   44 (255)
T ss_pred             EEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchH----------------------------------H-------HHH
Confidence            5799999999999998  58999999863111000                                  0       002


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHH--HHHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv--~~~l~qI~~~  453 (766)
                      +.+|...+..+    . ++++.-..-..+..+..+++|||++|+++.+..... ....+...+...+.  ...+..+|..
T Consensus        45 ~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~  119 (255)
T cd08219          45 SRKEAVLLAKM----K-HPNIVAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEK  119 (255)
T ss_pred             HHHHHHHHHhC----C-CCCcceEEEEEEECCEEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            23343333332    2 233322222223456789999999999988754321 22234443333332  2347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|.||++++  ++.++++|||++..+.......      ....++..++++++......++..|++++...+.
T Consensus       120 ~i~H~dl~p~nili~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~  191 (255)
T cd08219         120 RVLHRDIKSKNIFLTQ--NGKVKLGDFGSARLLTSPGAYA------CTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILY  191 (255)
T ss_pred             CcccCCCCcceEEECC--CCcEEEcccCcceeeccccccc------ccccCCccccCHHHHccCCcCchhhhhhhchhhe
Confidence            9999999999999986  8899999999998775432211      1123556677888877666777889999887666


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       192 ~l~  194 (255)
T cd08219         192 ELC  194 (255)
T ss_pred             ehh
Confidence            554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.37  E-value=6.1e-12  Score=130.64  Aligned_cols=182  Identities=15%  Similarity=0.147  Sum_probs=120.7

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|++|.||+|.. +|+.||+|..+++...                                           .-+|
T Consensus        12 ~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~-------------------------------------------~~~~   48 (260)
T cd05067          12 KKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMS-------------------------------------------PEAF   48 (260)
T ss_pred             eeeccCccceEEeeecCCCceEEEEEecCCCCc-------------------------------------------HHHH
Confidence            5799999999999998 7899999987432111                                           0134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      .+|...+.++.    +..-+.+..++  .....+++|||++|++|.+..... ....+...+...+.+  ..+..+|..|
T Consensus        49 ~~E~~~l~~l~----h~~i~~~~~~~--~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~  122 (260)
T cd05067          49 LAEANLMKQLQ----HPRLVRLYAVV--TQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKN  122 (260)
T ss_pred             HHHHHHHHhcC----CcCeeeEEEEE--ccCCcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            44554444432    21112222222  134579999999999998865322 223444444333322  3368889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||++++  ++.+++.|||++..+.......     .........++.+++...+..++..|++++...+.+
T Consensus       123 i~H~dl~p~ni~i~~--~~~~~l~dfg~~~~~~~~~~~~-----~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~e  195 (260)
T cd05067         123 YIHRDLRAANILVSE--TLCCKIADFGLARLIEDNEYTA-----REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTE  195 (260)
T ss_pred             eecccccHHhEEEcC--CCCEEEccCcceeecCCCCccc-----ccCCcccccccCHHHhccCCcCcccchHHHHHHHHH
Confidence            999999999999986  8899999999998876322110     011122345777888777777888999999877766


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       196 l~  197 (260)
T cd05067         196 IV  197 (260)
T ss_pred             HH
Confidence            54

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.37  E-value=3.9e-12  Score=132.82  Aligned_cols=187  Identities=16%  Similarity=0.191  Sum_probs=119.4

Q ss_pred             ccccccceeEEEEEee--cC---eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KG---EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G---~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|.+|.||+|++  +|   ..||+|..+++....                                         .
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------------~   48 (267)
T cd05066          10 KVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEK-----------------------------------------Q   48 (267)
T ss_pred             eeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHH-----------------------------------------H
Confidence            6799999999999987  23   379999875432111                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQIL  451 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~  451 (766)
                      .-+|.+|...+.++    .+..-+.+...+ ......+++|||++|++|.++........+...+...+.  ...+..+|
T Consensus        49 ~~~~~~e~~~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH  123 (267)
T cd05066          49 RRDFLSEASIMGQF----DHPNIIHLEGVV-TKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLS  123 (267)
T ss_pred             HHHHHHHHHHHHhC----CCCCcceEEEEE-ecCCccEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            11344455444443    222223333333 334567999999999999987643323345444443332  23467789


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|+||.||+++.  ++.++++|||++..+........ ..  .-......+++++....+..++..|.+++...
T Consensus       124 ~~~i~h~dlkp~nili~~--~~~~~l~dfg~~~~~~~~~~~~~-~~--~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~  198 (267)
T cd05066         124 DMGYVHRDLAARNILVNS--NLVCKVSDFGLSRVLEDDPEAAY-TT--RGGKIPIRWTAPEAIAYRKFTSASDVWSYGIV  198 (267)
T ss_pred             HCCEeehhhchhcEEECC--CCeEEeCCCCcccccccccceee-ec--CCCccceeecCHhHhccCccCchhhhHHHHHH
Confidence            999999999999999985  88999999999987754321110 00  00011234667777776667778899999877


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       199 l~ell  203 (267)
T cd05066         199 MWEVM  203 (267)
T ss_pred             HHHHh
Confidence            66544

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.37  E-value=6.5e-12  Score=130.58  Aligned_cols=122  Identities=13%  Similarity=0.096  Sum_probs=83.2

Q ss_pred             eEEEEeecCCCChhhhhhhhh-----cCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecc
Q 004234          410 QILTMEYVPGIKINRIQSLDE-----LGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGM  482 (766)
Q Consensus       410 ~vLVMEyieG~~L~d~~~l~~-----~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGl  482 (766)
                      .+++|||+++++|.+......     ..++...+...+.+  ..+..+|..|++|+|++|.||++++  ++.++++|||+
T Consensus        82 ~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~--~~~~kl~dfg~  159 (273)
T cd05035          82 PMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLRE--DMTVCVADFGL  159 (273)
T ss_pred             cEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECC--CCeEEECCccc
Confidence            589999999999987653221     12333333333322  3367889999999999999999986  78999999999


Q ss_pred             eeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          483 MGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       483 v~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      +..+.........    ........+++++....+..+...|++++...+.+++.
T Consensus       160 ~~~~~~~~~~~~~----~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~  210 (273)
T cd05035         160 SKKIYSGDYYRQG----RIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIAT  210 (273)
T ss_pred             eeecccccccccc----ccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHh
Confidence            8876443211000    01112345667777766677788999999987776553

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.37  E-value=5.6e-12  Score=131.15  Aligned_cols=181  Identities=14%  Similarity=0.130  Sum_probs=118.3

Q ss_pred             ccccccceeEEEEEeec-CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.+|+|++|.||.|... +..||||..+++-..                                           +-+|
T Consensus        10 ~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~-------------------------------------------~~~~   46 (256)
T cd05113          10 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS-------------------------------------------EDEF   46 (256)
T ss_pred             eEecCcccceEEEEEecCCCcEEEEEcCCCccc-------------------------------------------HHHH
Confidence            57999999999999984 567999976432100                                           1134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      .+|...+.++     ++++  +++++.  ......+++|||++|++|.+.........+...+...+.+  ..+..+|..
T Consensus        47 ~~e~~~l~~l-----~h~~--i~~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~  119 (256)
T cd05113          47 IEEAKVMMKL-----SHEK--LVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESK  119 (256)
T ss_pred             HHHHHHHhcC-----CCCC--eeeEEEEEccCCCcEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            4555555443     2232  334443  2234569999999999998865432223455444444333  336788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||+||+++.  ++.++++|||+...+....-...     ........++.+++...+......|++++...+.
T Consensus       120 ~i~H~dl~p~nili~~--~~~~kl~d~g~~~~~~~~~~~~~-----~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~  192 (256)
T cd05113         120 QFIHRDLAARNCLVDD--QGCVKVSDFGLSRYVLDDEYTSS-----VGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMW  192 (256)
T ss_pred             CeeccccCcceEEEcC--CCCEEECCCccceecCCCceeec-----CCCccChhhCCHHHHhcCcccchhHHHHHHHHHH
Confidence            9999999999999985  88999999999876643211000     0011234567777777666777889999987766


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       193 ~l~  195 (256)
T cd05113         193 EVY  195 (256)
T ss_pred             HHh
Confidence            554

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.37  E-value=6.2e-12  Score=134.34  Aligned_cols=179  Identities=17%  Similarity=0.168  Sum_probs=115.5

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .||.|++|+||+|..  +|+.||||+........                                    ..      .+
T Consensus        28 ~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~------------------------------------~~------~~   65 (297)
T cd06659          28 KIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQR------------------------------------RE------LL   65 (297)
T ss_pred             hcCCCCceeEEEEEEcCCCCEEEEEEEEecccch------------------------------------HH------HH
Confidence            699999999999998  58999999873221100                                    00      12


Q ss_pred             HHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          378 TQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      .+|...+..+    . ++++ .+...+ ......+++|||++|.+|.++...  ...+...+...+.+  ..+..+|..|
T Consensus        66 ~~e~~~l~~l----~-hp~i~~~~~~~-~~~~~~~iv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH~~~  137 (297)
T cd06659          66 FNEVVIMRDY----Q-HQNVVEMYKSY-LVGEELWVLMEFLQGGALTDIVSQ--TRLNEEQIATVCESVLQALCYLHSQG  137 (297)
T ss_pred             HHHHHHHHhC----C-CCchhhhhhhe-eeCCeEEEEEecCCCCCHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            2222222221    1 1221 111111 224567999999999999886432  23344444333322  2367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|+||+++.  ++.++|+|||++..+.......      ....+...++++++...+..+...|++++...+.+
T Consensus       138 ivH~dl~p~Nill~~--~~~~kL~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e  209 (297)
T cd06659         138 VIHRDIKSDSILLTL--DGRVKLSDFGFCAQISKDVPKR------KSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIE  209 (297)
T ss_pred             eecCCCCHHHeEEcc--CCcEEEeechhHhhcccccccc------cceecCccccCHHHHccCCCCchhhHHHHHHHHHH
Confidence            999999999999986  8999999999987665432211      11234566778888776666778899999877766


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       210 l~  211 (297)
T cd06659         210 MV  211 (297)
T ss_pred             HH
Confidence            55

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.37  E-value=8.9e-12  Score=129.22  Aligned_cols=180  Identities=21%  Similarity=0.218  Sum_probs=114.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +++|+|++|+||+|+.  +|+.||||+.+......                                ..       ...+
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~--------------------------------~~-------~~~~   42 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIA--------------------------------KN-------QVTN   42 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhH--------------------------------HH-------HHHH
Confidence            4799999999999998  58999999873210000                                00       0011


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      +..|...+.   ... +++  .+++++.  +.....+++|||++|++|.++.... ...+...+...+.+  ..+..+|.
T Consensus        43 ~~~e~~~~~---~~~-~~~--~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~lH~  115 (260)
T cd05611          43 VKAERAIMM---IQG-ESP--YVAKLYYSFQSKDYLYLVMEYLNGGDCASLIKTL-GGLPEDWAKQYIAEVVLGVEDLHQ  115 (260)
T ss_pred             HHHHHHHHh---hcC-CCC--CeeeeeeeEEcCCeEEEEEeccCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            122211111   111 222  2333332  2235679999999999999875321 22343333333222  33678899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      .|++|+|++|.||+++.  ++.++|+|||+.......          ....++..++.++....+..+...|++++...+
T Consensus       116 ~~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~----------~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il  183 (260)
T cd05611         116 RGIIHRDIKPENLLIDQ--TGHLKLTDFGLSRNGLEN----------KKFVGTPDYLAPETILGVGDDKMSDWWSLGCVI  183 (260)
T ss_pred             CCeecCCCCHHHeEECC--CCcEEEeecccceecccc----------ccCCCCcCccChhhhcCCCCcchhhhHHHHHHH
Confidence            99999999999999986  789999999988765431          112345667777777666567778999998777


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       184 ~~l~  187 (260)
T cd05611         184 FEFL  187 (260)
T ss_pred             HHHH
Confidence            6654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.37  E-value=9.9e-12  Score=126.58  Aligned_cols=164  Identities=16%  Similarity=0.148  Sum_probs=107.6

Q ss_pred             ccccccceeEEEEEee-c-------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCC--CcccchHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-K-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD--GAKRDWVAIYDECA  368 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~-------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~--~~~~d~~~i~~E~~  368 (766)
                      .+|++|--+-||.|.. +       +.+||||+-|....+-        +....++.. .+...  ..+.+|..++...+
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~F--------k~~~~y~~~-~~rf~~~~~k~~~~~~~~~wa   73 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEF--------KNRDKYIKD-DYRFKDRFSKLNPRKIIRMWA   73 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeE--------cChhhhccC-CcccccCcCCCCHHHHHHHHH
Confidence            4789999999999986 3       3799999998765432        111222211 11111  11234554444332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCC---HHHHHHHHHHH
Q 004234          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVD---RKRLGRYAVES  445 (766)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d---~~~la~~lv~~  445 (766)
                               .+|++|+.++++     .++.+|.++.  ..+.+|||||+.|..+... .+.....+   ...+...++..
T Consensus        74 ---------~kE~r~L~rl~~-----~Gv~vP~pi~--~~~~~lvME~Ig~~~~~~~-~Lkd~~~~~~~~~~i~~~i~~~  136 (197)
T cd05146          74 ---------EKEMHNLKRMQK-----AGIPCPEVVV--LKKHVLVMSFIGDDQVPAP-KLKDAKLNDEEMKNAYYQVLSM  136 (197)
T ss_pred             ---------HHHHHHHHHHHH-----cCCCCCeEEE--ecCCEEEEEEcCCCCccch-hhhccccCHHHHHHHHHHHHHH
Confidence                     468899999876     3588999995  5889999999987533211 01111122   23334444555


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhH
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR  491 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r  491 (766)
                      +..++|..|++|+||+|.||++.   +++++|||||.+-..+....
T Consensus       137 l~~l~H~~glVHGDLs~~NIL~~---~~~v~iIDF~qav~~~hp~a  179 (197)
T cd05146         137 MKQLYKECNLVHADLSEYNMLWH---DGKVWFIDVSQSVEPTHPHG  179 (197)
T ss_pred             HHHHHHhCCeecCCCCHHHEEEE---CCcEEEEECCCceeCCCCCH
Confidence            55555899999999999999996   57899999999998876543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.37  E-value=8.6e-12  Score=131.28  Aligned_cols=182  Identities=16%  Similarity=0.161  Sum_probs=116.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|..  +|..|++|.........                                          .-+
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~------------------------------------------~~~   48 (282)
T cd06643          11 GELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEE------------------------------------------LED   48 (282)
T ss_pred             hhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHH------------------------------------------HHH
Confidence            4699999999999999  47889999763221100                                          012


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      |.+|...+..+     +++++ .+...+ ......+++|||++|+.+.+........++...+...+.+  ..+..+|..
T Consensus        49 ~~~e~~~l~~l-----~h~~ii~~~~~~-~~~~~~~~v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~  122 (282)
T cd06643          49 YMVEIDILASC-----DHPNIVKLLDAF-YYENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHEN  122 (282)
T ss_pred             HHHHHHHHHHC-----CCCCeeeEEEEE-eeCCEEEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            34454444433     22332 222222 2345679999999999998754322233444444443322  346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCCCCCCCCHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGVLVPTGDTTAV  528 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~-----lG~~~~~~D~~~l  528 (766)
                      |++|+|++|.||+++.  +++++++|||++.........      .....++..++++++..     .+..+...|++++
T Consensus       123 ~i~H~dlkp~nili~~--~~~~kl~dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~sl  194 (282)
T cd06643         123 KIIHRDLKAGNILFTL--DGDIKLADFGVSAKNTRTIQR------RDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSL  194 (282)
T ss_pred             CeeecCCCcccEEEcc--CCCEEEccccccccccccccc------cccccccccccCHhhccccCCCCCCCCccchhhhH
Confidence            9999999999999985  889999999998766432211      01123456678888763     2234456899998


Q ss_pred             HHHHHHHH
Q 004234          529 RRTAQFFL  536 (766)
Q Consensus       529 ~~~i~~~l  536 (766)
                      ...+.+++
T Consensus       195 Gvil~el~  202 (282)
T cd06643         195 GITLIEMA  202 (282)
T ss_pred             HHHHHHHc
Confidence            87665543

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.37  E-value=5.6e-12  Score=131.03  Aligned_cols=186  Identities=17%  Similarity=0.117  Sum_probs=118.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.|+||.....-                               ..   +     ....-+
T Consensus         8 ~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~-------------------------------~~---~-----~~~~~~   48 (267)
T cd08229           8 KKIGRGQFSEVYRATCLLDGVPVALKKVQIFD-------------------------------LM---D-----AKARAD   48 (267)
T ss_pred             hhhcccCCeEEEEEeecCCCceEEEEeeeehh-------------------------------hh---h-----HHHHHH
Confidence            6799999999999997  69999999652100                               00   0     001124


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhh-h--hcCCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSL-D--ELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~--~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      +.+|.+-+..+.    + +++ .+...+ ......+++|||++|++|.++... .  ...++...+...+.+  ..+..+
T Consensus        49 ~~~e~~~l~~~~----h-~~i~~~~~~~-~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~L  122 (267)
T cd08229          49 CIKEIDLLKQLN----H-PNVIKYYASF-IEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHM  122 (267)
T ss_pred             HHHHHHHHHHcc----C-Cchhhhhhee-EeCCeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            445554444331    2 222 222222 123457899999999999986532 1  112344443333322  336788


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|++|.||+++.  ++.++++|||++..+......      .....++..+++++.......+...|++++..
T Consensus       123 H~~~i~H~dl~p~nili~~--~~~~~l~dfg~~~~~~~~~~~------~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~  194 (267)
T cd08229         123 HSRRVMHRDIKPANVFITA--TGVVKLGDLGLGRFFSSKTTA------AHSLVGTPYYMSPERIHENGYNFKSDIWSLGC  194 (267)
T ss_pred             HHCCeecCCCCHHHEEEcC--CCCEEECcchhhhccccCCcc------cccccCCcCccCHHHhcCCCccchhhHHHHHH
Confidence            9999999999999999985  889999999998876543211      01123455667777776666677789999988


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       195 il~~l~~  201 (267)
T cd08229         195 LLYEMAA  201 (267)
T ss_pred             HHHHHHh
Confidence            7766543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.37  E-value=2.5e-12  Score=137.07  Aligned_cols=180  Identities=15%  Similarity=0.161  Sum_probs=115.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..||.|++|.||+|..  +|+.||||...-....                                    -.+      .
T Consensus        28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~------------------------------------~~~------~   65 (292)
T cd06658          28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQ------------------------------------RRE------L   65 (292)
T ss_pred             hcccCCCCeEEEEEEECCCCCEEEEEEEecchHH------------------------------------HHH------H
Confidence            4699999999999998  5899999976211000                                    001      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|...+..+    . ++++ .+...+ ......+++|||++|.++.++...  ...+...+.....+  ..+..+|..
T Consensus        66 ~~~e~~~l~~l----~-h~~ii~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~--~~l~~~~~~~~~~qi~~~l~~LH~~  137 (292)
T cd06658          66 LFNEVVIMRDY----H-HENVVDMYNSY-LVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIATVCLSVLRALSYLHNQ  137 (292)
T ss_pred             HHHHHHHHHhC----C-CCcHHHHHHhe-ecCCeEEEEEeCCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            22333332222    1 1221 111122 224567999999999999886532  22344444333332  336788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|.||++++  ++.++|+|||++..+.......      ....+...++++++..-...+...|++++...+.
T Consensus       138 ~ivH~dlkp~Nill~~--~~~~kL~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~  209 (292)
T cd06658         138 GVIHRDIKSDSILLTS--DGRIKLSDFGFCAQVSKEVPKR------KSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVI  209 (292)
T ss_pred             CEeecCCCHHHEEEcC--CCCEEEccCcchhhcccccccC------ceeecCccccCHHHHccCCCCchhhHHHHHHHHH
Confidence            9999999999999985  7899999999987654432211      0122456677888876666677889999987776


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       210 el~  212 (292)
T cd06658         210 EMI  212 (292)
T ss_pred             HHH
Confidence            654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.37  E-value=5e-12  Score=133.12  Aligned_cols=186  Identities=16%  Similarity=0.112  Sum_probs=119.2

Q ss_pred             ccccccceeEEEEEee------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.||.|++|+||.+..      +|+.||+|+.+......                                         
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------   48 (283)
T cd05080          10 RVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQ-----------------------------------------   48 (283)
T ss_pred             eecccCCCcEEEEeeEccccCCCCceEEEEEeccccChH-----------------------------------------
Confidence            5799999999988653      47899999875432110                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~  448 (766)
                      .+-.|.+|.+.+.++     +++++ .+...+... ....+++|||++|++|.+...  ...++...+...+.+  ..+.
T Consensus        49 ~~~~~~~E~~~l~~l-----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~--~~~l~~~~~~~i~~~l~~~l~  121 (283)
T cd05080          49 NTSGWKKEINILKTL-----YHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLP--KHKLNLAQLLLFAQQICEGMA  121 (283)
T ss_pred             HHHHHHHHHHHHHhC-----CCCCEeeEEEEEecCCCceEEEEecCCCCCCHHHHHH--HcCCCHHHHHHHHHHHHHHHH
Confidence            011344455544443     22322 222222121 123689999999999988753  233555555444433  3378


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      .+|..|++|+|++|.||+++.  ++.+++.|||++..+.......-  . .........++.++....+..++..|++++
T Consensus       122 ~lH~~~i~H~dlkp~Nili~~--~~~~~l~dfg~~~~~~~~~~~~~--~-~~~~~~~~~~~~PE~~~~~~~~~~~Di~sl  196 (283)
T cd05080         122 YLHSQHYIHRDLAARNVLLDN--DRLVKIGDFGLAKAVPEGHEYYR--V-REDGDSPVFWYAVECLKENKFSYASDVWSF  196 (283)
T ss_pred             HHHHCCeeccccChheEEEcC--CCcEEEeecccccccCCcchhhc--c-CCCCCCCceeeCHhHhcccCCCcccccHHH
Confidence            889999999999999999985  78999999999887754322100  0 000112233567777766777888999999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       197 G~~l~el~t  205 (283)
T cd05080         197 GVTLYELLT  205 (283)
T ss_pred             HHHHHHHHh
Confidence            988777654

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.37  E-value=7.5e-12  Score=130.53  Aligned_cols=185  Identities=14%  Similarity=0.056  Sum_probs=118.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..||.|++|.||+|++  +++.|++|.........                                          .-+
T Consensus        14 ~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~------------------------------------------~~~   51 (268)
T cd06624          14 VVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRY------------------------------------------VQP   51 (268)
T ss_pred             EEEecCCceEEEEeEecCCCcEEEEEEecCCCHHH------------------------------------------HHH
Confidence            5799999999999998  57899999764321110                                          113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCC--CHHHHHHHH--HHHHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV--DRKRLGRYA--VESYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~--d~~~la~~l--v~~~l~qI~~  452 (766)
                      +.+|+..+.++.     ++++.-..-+.......+++|||++|.+|.+.........  +...+...+  +...+..+|.
T Consensus        52 ~~~e~~~l~~l~-----h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~  126 (268)
T cd06624          52 LHEEIALHSYLK-----HRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHD  126 (268)
T ss_pred             HHHHHHHHHhcC-----CCCeeeeeeeeccCCEEEEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            445555554442     2332211112233456799999999999998654322222  333333322  3344778899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC--CCCCCCHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV--LVPTGDTTAVRR  530 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~--~~~~~D~~~l~~  530 (766)
                      .|++|+|++|.||+++. .++.++|+|||++..+......      .....++..++++++...+.  .....|++++..
T Consensus       127 ~~i~h~dl~p~nil~~~-~~~~~~l~dfg~~~~~~~~~~~------~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGv  199 (268)
T cd06624         127 NQIVHRDIKGDNVLVNT-YSGVVKISDFGTSKRLAGINPC------TETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGC  199 (268)
T ss_pred             CCEeecCCCHHHEEEcC-CCCeEEEecchhheecccCCCc------cccCCCCccccChhhhccccccCCchhhhHHHHH
Confidence            99999999999999974 3678999999998876432211      01123456677777765433  456789999987


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       200 vl~~l~~  206 (268)
T cd06624         200 TIVEMAT  206 (268)
T ss_pred             HHHHHHh
Confidence            7666543

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.37  E-value=7.4e-12  Score=130.42  Aligned_cols=183  Identities=15%  Similarity=0.091  Sum_probs=119.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|..  +++.||+|+...+...                                           .-+
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~-------------------------------------------~~~   48 (263)
T cd05052          12 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-------------------------------------------VEE   48 (263)
T ss_pred             eecCCcccceEEEEEEecCCceEEEEEecCCchH-------------------------------------------HHH
Confidence            6799999999999998  4899999987432100                                           012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|.+-+.++    .+..-+.+...+ ......+++|||++|++|.+..... ....+...+...+.+  ..+..+|..
T Consensus        49 ~~~e~~~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~  123 (263)
T cd05052          49 FLKEAAVMKEI----KHPNLVQLLGVC-TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK  123 (263)
T ss_pred             HHHHHHHHHhC----CCCChhheEEEE-cCCCCcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            33444433333    222122222222 3345678999999999999865322 122344433332222  236788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|.||++++  ++.++++|||++..+........     ........+++++....+..++..|++++...+.
T Consensus       124 ~i~H~dlkp~nil~~~--~~~~kl~df~~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~  196 (263)
T cd05052         124 NFIHRDLAARNCLVGE--NHLVKVADFGLSRLMTGDTYTAH-----AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLW  196 (263)
T ss_pred             CEeecccCcceEEEcC--CCcEEeCCCccccccccceeecc-----CCCCCccccCCHHHhccCCCCchhHHHHHHHHHH
Confidence            9999999999999985  88999999999987754322110     0011234577888877777778889999988776


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       197 el~  199 (263)
T cd05052         197 EIA  199 (263)
T ss_pred             HHH
Confidence            655

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.37  E-value=5e-12  Score=134.90  Aligned_cols=186  Identities=15%  Similarity=0.113  Sum_probs=115.8

Q ss_pred             ccccccceeEEEEEee---------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL---------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l---------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      .+||.|++|.||+|+.         ++..||+|+.+......                                      
T Consensus        21 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~--------------------------------------   62 (304)
T cd05101          21 KPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEK--------------------------------------   62 (304)
T ss_pred             ceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchH--------------------------------------
Confidence            7899999999999974         24579999874332111                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCC
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGV  433 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~  433 (766)
                         ..-++.+|...+..+.    +++++ .+...+ ......+++|||++|++|.++.....               ..+
T Consensus        63 ---~~~~~~~E~~~l~~l~----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~  134 (304)
T cd05101          63 ---DLSDLVSEMEMMKMIG----KHKNIINLLGAC-TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQM  134 (304)
T ss_pred             ---HHHHHHHHHHHHHhhc----cCCCchheeEEE-ecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccc
Confidence               0012333444333331    22332 222222 33456789999999999988654221               112


Q ss_pred             CHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHH
Q 004234          434 DRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ  511 (766)
Q Consensus       434 d~~~la~~l--v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~  511 (766)
                      +...+....  +-..+..+|..|++|+|++|.||+++.  ++.++|+|||.+..+........    .......+.++++
T Consensus       135 ~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nili~~--~~~~kl~D~g~~~~~~~~~~~~~----~~~~~~~~~y~aP  208 (304)
T cd05101         135 TFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTE--NNVMKIADFGLARDVNNIDYYKK----TTNGRLPVKWMAP  208 (304)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCeeecccccceEEEcC--CCcEEECCCccceeccccccccc----ccCCCCCceeeCc
Confidence            222333222  223367889999999999999999985  88999999999987754322110    0001123457778


Q ss_pred             HHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          512 AMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       512 ~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +....+..+...|++++...+.+++
T Consensus       209 E~~~~~~~~~~~Di~slG~~l~el~  233 (304)
T cd05101         209 EALFDRVYTHQSDVWSFGVLMWEIF  233 (304)
T ss_pred             hhhccCCCCchhhHHHHHHHHHHHH
Confidence            7776666677789999987666543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.36  E-value=5.1e-12  Score=134.31  Aligned_cols=187  Identities=19%  Similarity=0.144  Sum_probs=117.9

Q ss_pred             ccccccceeEEEEEee------------------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccch
Q 004234          299 EPIAAASLGQVHRARL------------------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW  360 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l------------------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~  360 (766)
                      +.||.|++|.||+|..                  ++..||||+.+......                             
T Consensus        11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~-----------------------------   61 (296)
T cd05095          11 EKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKN-----------------------------   61 (296)
T ss_pred             eeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHH-----------------------------
Confidence            5799999999999853                  13468899875432111                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc---------
Q 004234          361 VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---------  431 (766)
Q Consensus       361 ~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~---------  431 (766)
                                  ..-+|.+|++.+..+.     ++++.-..-+.......+++|||++|++|.++......         
T Consensus        62 ------------~~~~~~~E~~~l~~l~-----~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  124 (296)
T cd05095          62 ------------ARNDFLKEIKIMSRLK-----DPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADV  124 (296)
T ss_pred             ------------HHHHHHHHHHHHHhCC-----CCCcceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccc
Confidence                        0124555655555442     23322111122334567999999999999886532111         


Q ss_pred             -CCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHH
Q 004234          432 -GVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADK  508 (766)
Q Consensus       432 -g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~  508 (766)
                       ..+...+...+.+  ..+..+|..|++|+|++|.||+++.  ++.++++|||++..+........    .+.......+
T Consensus       125 ~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nili~~--~~~~~l~dfg~~~~~~~~~~~~~----~~~~~~~~~~  198 (296)
T cd05095         125 VTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGK--NYTIKIADFGMSRNLYSGDYYRI----QGRAVLPIRW  198 (296)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEEEcC--CCCEEeccCcccccccCCcceec----cCcCcCcccc
Confidence             1222233333322  3468899999999999999999985  88999999999887643321100    0111113445


Q ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          509 VLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       509 v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      ++++....+..+...|++++...+.+++.
T Consensus       199 ~~pe~~~~~~~~~~~DiwSlG~~l~el~~  227 (296)
T cd05095         199 MSWESILLGKFTTASDVWAFGVTLWEILT  227 (296)
T ss_pred             CCHHHHhcCCccchhhhhHHHHHHHHHHH
Confidence            66766666777888999999988777664

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.36  E-value=3e-12  Score=131.28  Aligned_cols=137  Identities=20%  Similarity=0.287  Sum_probs=96.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      .+||+||||-+|.|..  +|++||||+-...+...                                            .
T Consensus        21 rkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hp--------------------------------------------q   56 (341)
T KOG1163|consen   21 RKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHP--------------------------------------------Q   56 (341)
T ss_pred             EeecCCchhheeeeeeccCCceEEEEeecccCCCc--------------------------------------------c
Confidence            6899999999999998  79999999875443321                                            1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCC--CeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH---HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTT--PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES---YLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st--~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~---~l~qI~  451 (766)
                      +..|++--..+    +  ..+-+|.+.+-.+.  -.|||||.+ |.+|.++.......++.+.+. .+++.   -++.+|
T Consensus        57 L~yEskvY~iL----~--~g~GiP~i~~y~~e~~ynvlVMdLL-GPsLEdLfnfC~R~ftmkTvL-MLaDQml~RiEyvH  128 (341)
T KOG1163|consen   57 LLYESKVYRIL----Q--GGVGIPHIRHYGTEKDYNVLVMDLL-GPSLEDLFNFCSRRFTMKTVL-MLADQMLSRIEYVH  128 (341)
T ss_pred             hhHHHHHHHHh----c--cCCCCchhhhhccccccceeeeecc-CccHHHHHHHHhhhhhHHhHH-HHHHHHHHHHHHHH
Confidence            22344433322    2  35678888875443  459999987 889999877665555544332 12222   267789


Q ss_pred             hCCccccCCCCCcEEEee-cCCCcEEEEeecceeccC
Q 004234          452 SHGFFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSIS  487 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~-~~~g~l~LiDFGlv~~L~  487 (766)
                      .++|+|+|+||.|+|..- ..-.++.+||||+++.+-
T Consensus       129 ~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~  165 (341)
T KOG1163|consen  129 LRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYR  165 (341)
T ss_pred             hhccccccCCccceeeccccccceEEEEeccchhhhc
Confidence            999999999999999852 123589999999998763

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.36  E-value=9.3e-12  Score=133.53  Aligned_cols=182  Identities=16%  Similarity=0.169  Sum_probs=118.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|..  +|..||+|..+......                                   ...      +
T Consensus         7 ~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~-----------------------------------~~~------~   45 (308)
T cd06615           7 GELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPA-----------------------------------IRN------Q   45 (308)
T ss_pred             eeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHH-----------------------------------HHH------H
Confidence            5799999999999998  58899999874332111                                   111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh-C
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS-H  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~-~  453 (766)
                      +.+|++.+.++    .+..-+.+...+. .....+++|||++|++|.++.... ..++...+.....  -..+..+|. +
T Consensus        46 ~~~E~~~l~~l----~h~~iv~~~~~~~-~~~~~~lv~ey~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~  119 (308)
T cd06615          46 IIRELKVLHEC----NSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKA-GRIPENILGKISIAVLRGLTYLREKH  119 (308)
T ss_pred             HHHHHHHHHhC----CCCCCCeEEEEEe-eCCEEEEEeeccCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence            33444444443    2222233333332 346779999999999999875322 2233332222222  223566776 6


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|.||++++  ++.++++|||+++.+......        ...+...+++++.......+...|++++...+.
T Consensus       120 ~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~--------~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~  189 (308)
T cd06615         120 KIMHRDVKPSNILVNS--RGEIKLCDFGVSGQLIDSMAN--------SFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLV  189 (308)
T ss_pred             CEEECCCChHHEEEec--CCcEEEccCCCcccccccccc--------cCCCCcCccChhHhcCCCCCccchHHHHHHHHH
Confidence            9999999999999986  889999999998766443211        123455677777776666677889999988776


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       190 ~l~~  193 (308)
T cd06615         190 EMAI  193 (308)
T ss_pred             HHHh
Confidence            6653

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.36  E-value=2.7e-12  Score=141.19  Aligned_cols=176  Identities=11%  Similarity=0.047  Sum_probs=113.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|+.  +++.||+|+...+..                                               
T Consensus        72 ~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~~-----------------------------------------------  104 (357)
T PHA03209         72 KTLTPGSEGRVFVATKPGQPDPVVLKIGQKGTT-----------------------------------------------  104 (357)
T ss_pred             EEecCCCCeEEEEEEECCCCceEEEEeCCcccc-----------------------------------------------
Confidence            6899999999999999  478999997532210                                               


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~~G  454 (766)
                       ..|+..+.++    .+..-+.+...+ ......++||||+.| .+.++.......++...+...+.  ...+..+|..|
T Consensus       105 -~~E~~~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~  177 (357)
T PHA03209        105 -LIEAMLLQNV----NHPSVIRMKDTL-VSGAITCMVLPHYSS-DLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQR  177 (357)
T ss_pred             -HHHHHHHHhC----CCCCCcChhheE-EeCCeeEEEEEccCC-cHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence             1122222222    121112222222 224557899999976 45554322223344444433332  23478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  ++.++|+|||++.........      . -..++..++++++...+......|++++...+.+
T Consensus       178 ivHrDlkp~Nill~~--~~~~kl~DfG~a~~~~~~~~~------~-~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~e  248 (357)
T PHA03209        178 IIHRDVKTENIFIND--VDQVCIGDLGAAQFPVVAPAF------L-GLAGTVETNAPEVLARDKYNSKADIWSAGIVLFE  248 (357)
T ss_pred             eecCCCCHHHEEECC--CCCEEEecCccccccccCccc------c-cccccccccCCeecCCCCCCchhhHHHHHHHHHH
Confidence            999999999999986  889999999998753322110      0 1235677788888776667788899999988777


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       249 ll~  251 (357)
T PHA03209        249 MLA  251 (357)
T ss_pred             HHH
Confidence            653

>PTZ00284 protein kinase; Provisional

Probab=99.36  E-value=2.7e-12  Score=146.41  Aligned_cols=185  Identities=15%  Similarity=0.103  Sum_probs=114.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|+||.||+|+.  .|+.||||+.+...                                     ........|+.
T Consensus       135 ~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-------------------------------------~~~~~~~~e~~  177 (467)
T PTZ00284        135 SLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-------------------------------------KYTRDAKIEIQ  177 (467)
T ss_pred             EEEEeccCEEEEEEEEcCCCeEEEEEEEecch-------------------------------------hhHHHHHHHHH
Confidence            5799999999999998  58999999873210                                     00111223444


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh-C
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS-H  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~-~  453 (766)
                      +..+.+....    ......+.+...+..-....++|||++ |..+.++.. ....+....+...+.+  ..+..+|. .
T Consensus       178 ~l~~l~~~~~----~~~~~i~~i~~~~~~~~~~~~iv~~~~-g~~l~~~l~-~~~~l~~~~~~~i~~qi~~aL~yLH~~~  251 (467)
T PTZ00284        178 FMEKVRQADP----ADRFPLMKIQRYFQNETGHMCIVMPKY-GPCLLDWIM-KHGPFSHRHLAQIIFQTGVALDYFHTEL  251 (467)
T ss_pred             HHHHHhhcCc----ccCcceeeeEEEEEcCCceEEEEEecc-CCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            4333322111    001112223333333334578999988 555655432 1223444444433333  34778887 5


Q ss_pred             CccccCCCCCcEEEeecCCC----------------cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC
Q 004234          454 GFFHADPHPGNIAVDDVNGG----------------RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG  517 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g----------------~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG  517 (766)
                      |++|+|+||+|||++.  ++                .++|+|||.+.......         ....+...+++++++..+
T Consensus       252 gIiHrDlKP~NILl~~--~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~~---------~~~~gt~~Y~APE~~~~~  320 (467)
T PTZ00284        252 HLMHTDLKPENILMET--SDTVVDPVTNRALPPDPCRVRICDLGGCCDERHSR---------TAIVSTRHYRSPEVVLGL  320 (467)
T ss_pred             CeecCCCCHHHEEEec--CCcccccccccccCCCCceEEECCCCccccCcccc---------ccccCCccccCcHHhhcC
Confidence            9999999999999975  32                59999999875433221         112456788899988766


Q ss_pred             CCCCCCCHHHHHHHHHHHHH
Q 004234          518 VLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       518 ~~~~~~D~~~l~~~i~~~l~  537 (766)
                      ......|++++...+.+++.
T Consensus       321 ~~~~~~DiwSlGvil~ellt  340 (467)
T PTZ00284        321 GWMYSTDMWSMGCIIYELYT  340 (467)
T ss_pred             CCCcHHHHHHHHHHHHHHHh
Confidence            66777899999988777653

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.36  E-value=6.6e-12  Score=130.05  Aligned_cols=182  Identities=15%  Similarity=0.141  Sum_probs=121.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||.|++|.||+|..  +|+.||+|+........                             .          ...-+
T Consensus         6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------~----------~~~~~   46 (258)
T cd05578           6 RVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVE-----------------------------K----------GSVRN   46 (258)
T ss_pred             EEeccCCCceEEEEEEccCCcEEEEEEEehhhhcc-----------------------------h----------hHHHH
Confidence            6899999999999999  49999999874211000                             0          00112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      +.+|.+.+.++.     ++++  +.++.  +-....+++|||++|.+|.+..... ...+...+...+.+  ..+..+|.
T Consensus        47 ~~~e~~~l~~l~-----h~~i--~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~i~~~l~~lh~  118 (258)
T cd05578          47 VLNERRILQELN-----HPFL--VNLWYSFQDEENMYLVVDLLLGGDLRYHLSQK-VKFSEEQVKFWICEIVLALEYLHS  118 (258)
T ss_pred             HHHHHHHHHhCC-----CCCh--HHHHHhhcCCCeEEEEEeCCCCCCHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHh
Confidence            333444333331     1221  22211  2245679999999999999865432 23454444443333  23678899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      .|++|+|++|.||+++.  ++.++++|||.+..+.....       .....++..++.++.......+...|++++...+
T Consensus       119 ~~i~h~dl~~~nil~~~--~~~~~l~d~~~~~~~~~~~~-------~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l  189 (258)
T cd05578         119 KGIIHRDIKPDNILLDE--QGHVHITDFNIATKVTPDTL-------TTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTA  189 (258)
T ss_pred             CCeeccCCCHHHeEEcC--CCCEEEeecccccccCCCcc-------ccccCCChhhcCHHHHcccCCCCcccchhhHHHH
Confidence            99999999999999986  88999999999887765431       1123456678888887766677889999998777


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       190 ~~l~  193 (258)
T cd05578         190 YECL  193 (258)
T ss_pred             HHHH
Confidence            6655

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.36  E-value=5.2e-12  Score=133.24  Aligned_cols=119  Identities=13%  Similarity=0.035  Sum_probs=79.2

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecC-----CCcEEEEe
Q 004234          407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVN-----GGRLIFYD  479 (766)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~-----~g~l~LiD  479 (766)
                      .+..+|||||++|++|.++.......++.......+.+  ..+..+|..|++|+|+||.||+++...     .+.+++.|
T Consensus        88 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d  167 (274)
T cd05076          88 GSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSD  167 (274)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCccceeeecC
Confidence            45679999999999998875433333444444333322  346888999999999999999997411     12489999


Q ss_pred             ecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHHHH
Q 004234          480 FGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       480 FGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i~~~  535 (766)
                      ||..........          ..++..+++++.... ...++..|++++...+.++
T Consensus       168 ~g~~~~~~~~~~----------~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el  214 (274)
T cd05076         168 PGVSFTALSREE----------RVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEI  214 (274)
T ss_pred             Cccccccccccc----------cccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHH
Confidence            998754432211          123445667776543 3456778999998766554

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.36  E-value=5.5e-12  Score=131.47  Aligned_cols=188  Identities=14%  Similarity=0.154  Sum_probs=117.3

Q ss_pred             ccccccceeEEEEEee--cCe--eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGE--EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~--~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      +.||+|++|.||+|++  .++  .||||..+......                                 .       .-
T Consensus         5 ~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~---------------------------------~-------~~   44 (272)
T cd05075           5 KTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTR---------------------------------S-------EM   44 (272)
T ss_pred             cccCcccCceEEEeEEccCCCeeeEEEEecccCcCCH---------------------------------H-------HH
Confidence            4689999999999998  243  69999874432111                                 0       00


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeee-----ccCCCeEEEEeecCCCChhhhhhhhh-----cCCCHHHHHHHHHH
Q 004234          375 IDYTQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSLDE-----LGVDRKRLGRYAVE  444 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~-----e~st~~vLVMEyieG~~L~d~~~l~~-----~g~d~~~la~~lv~  444 (766)
                      -+|..|...+..+.    +..-+.+.....     ......+++|||++|++|.+......     ..++...+...+.+
T Consensus        45 ~~~~~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (272)
T cd05075          45 EDFLSEAVCMKEFD----HPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTD  120 (272)
T ss_pred             HHHHHHHHHHHhCC----CCCcceEEEEEccCCcccCCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHH
Confidence            13445555555442    211122221111     11234689999999999987643221     11333333333322


Q ss_pred             --HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004234          445 --SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (766)
Q Consensus       445 --~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~  522 (766)
                        ..+..+|..|++|+|+||.||+++.  ++.++++|||++..+........    -......+.+++++....+..++.
T Consensus       121 i~~~l~~lH~~~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~~~~~pe~~~~~~~~~~  194 (272)
T cd05075         121 IASGMEYLSSKSFIHRDLAARNCMLNE--NMNVCVADFGLSKKIYNGDYYRQ----GRIAKMPVKWIAIESLADRVYTTK  194 (272)
T ss_pred             HHHHHHHHHHCCeeccccchhheEEcC--CCCEEECCCCcccccCcccceec----CCcccCCcccCCHHHccCCCcChH
Confidence              3468889999999999999999985  88999999999987754321000    011223456777777776667788


Q ss_pred             CCHHHHHHHHHHHH
Q 004234          523 GDTTAVRRTAQFFL  536 (766)
Q Consensus       523 ~D~~~l~~~i~~~l  536 (766)
                      .|++++...+.+++
T Consensus       195 ~Di~slG~il~el~  208 (272)
T cd05075         195 SDVWSFGVTMWEIA  208 (272)
T ss_pred             HHHHHHHHHHHHHH
Confidence            89999987766554

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.36  E-value=7e-12  Score=145.83  Aligned_cols=143  Identities=20%  Similarity=0.222  Sum_probs=103.2

Q ss_pred             CcccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       297 d~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..+.||.|++|.||+|.+.++.+++|+..+.....                             .    ++...+ ..-.
T Consensus       337 ~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~-----------------------------~----~~~~~~-~~~~  382 (535)
T PRK09605        337 PDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRH-----------------------------P----ELDERL-RTER  382 (535)
T ss_pred             ccceeccCCcEEEEEEeecCccceeEEEecccccc-----------------------------h----hHHHHH-HHHH
Confidence            35789999999999999988788888764321111                             0    000001 1224


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCcc
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFF  456 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~Gff  456 (766)
                      +.+|++.+..++     .+++.+|.++.......+|||||++|.+|.+...      ....++..++ ..+.++|..|++
T Consensus       383 ~~~E~~~l~~l~-----~~~i~~p~~~~~~~~~~~lv~E~~~g~~L~~~l~------~~~~~~~~i~-~~L~~lH~~gii  450 (535)
T PRK09605        383 TRAEARLLSEAR-----RAGVPTPVIYDVDPEEKTIVMEYIGGKDLKDVLE------GNPELVRKVG-EIVAKLHKAGIV  450 (535)
T ss_pred             HHHHHHHHHhhc-----ccCCCeeEEEEEeCCCCEEEEEecCCCcHHHHHH------HHHHHHHHHH-HHHHHHHhCCCc
Confidence            667888877774     3557778888766678899999999999988643      1233444433 457889999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004234          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (766)
                      |+|+||+||++.   +++++++|||+++..++
T Consensus       451 HrDlkp~NILl~---~~~~~liDFGla~~~~~  479 (535)
T PRK09605        451 HGDLTTSNFIVR---DDRLYLIDFGLGKYSDL  479 (535)
T ss_pred             cCCCChHHEEEE---CCcEEEEeCcccccCCc
Confidence            999999999994   68899999999988654

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.36  E-value=5e-12  Score=133.04  Aligned_cols=187  Identities=18%  Similarity=0.186  Sum_probs=117.0

Q ss_pred             ccccccceeEEEEEee------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.||+|++|.||+|..      +|+.||||..+......                                         
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~-----------------------------------------   48 (284)
T cd05081          10 QQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEH-----------------------------------------   48 (284)
T ss_pred             eeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHH-----------------------------------------
Confidence            5799999999999984      37899999874321110                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccC-CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYT-TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~s-t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~  448 (766)
                       .-+|.+|.+.+.++    . ++++ .+..+..... ...+++|||++|++|.++........+...+.....+  ..+.
T Consensus        49 -~~~~~~e~~~l~~l----~-h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~  122 (284)
T cd05081          49 -LRDFEREIEILKSL----Q-HDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGME  122 (284)
T ss_pred             -HHHHHHHHHHHHhC----C-CCCeeEEEEEEccCCCCceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHH
Confidence             01234444444443    2 2322 1111111111 3468999999999999875432223444443333322  3477


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      .+|..|++|+|++|.||+++.  +++++|+|||++..+.........   .........+++++....+..+...|++++
T Consensus       123 ~LH~~~i~H~dlkp~nili~~--~~~~~l~dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  197 (284)
T cd05081         123 YLGSKRYVHRDLATRNILVES--ENRVKIGDFGLTKVLPQDKEYYKV---REPGESPIFWYAPESLTESKFSVASDVWSF  197 (284)
T ss_pred             HHHHCCceeccCCHhhEEECC--CCeEEECCCcccccccCCCcceee---cCCCCCceEeeCHHHhccCCcChHHHHHHH
Confidence            889999999999999999985  889999999999877543211000   000011223566777666666777899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       198 G~~l~el~~  206 (284)
T cd05081         198 GVVLYELFT  206 (284)
T ss_pred             HHHHHHHhh
Confidence            887776653

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.36  E-value=7.8e-12  Score=131.42  Aligned_cols=186  Identities=16%  Similarity=0.114  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEeec-------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      ++||.|++|.||+|.+.       +..|++|........                                         
T Consensus        12 ~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~-----------------------------------------   50 (277)
T cd05036          12 RALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSE-----------------------------------------   50 (277)
T ss_pred             eECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCH-----------------------------------------
Confidence            68999999999999983       367888866322111                                         


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceee--eccCCCeEEEEeecCCCChhhhhhhhhc------CCCHHHHHHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDEL------GVDRKRLGRYAV  443 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~--~e~st~~vLVMEyieG~~L~d~~~l~~~------g~d~~~la~~lv  443 (766)
                      ..+.+|.+|...+.++.     ++++  .+.+  .......+++|||++|++|.++......      .++...+...+.
T Consensus        51 ~~~~~~~~e~~~l~~l~-----~~~i--~~~~~~~~~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~  123 (277)
T cd05036          51 QDESDFLMEALIMSKFN-----HQNI--VRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCAR  123 (277)
T ss_pred             HHHHHHHHHHHHHHhCC-----CCCE--eeEEEEEccCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence            12335666665555442     2222  2233  2233567999999999999986532221      234444433333


Q ss_pred             H--HHHHHHHhCCccccCCCCCcEEEeecC-CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004234          444 E--SYLEQILSHGFFHADPHPGNIAVDDVN-GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (766)
Q Consensus       444 ~--~~l~qI~~~GffHaDpHPGNILV~~~~-~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~  520 (766)
                      +  ..+..+|..|++|+|++|.||+++... +..++++|||++..+....-...    .+.......+++++....+..+
T Consensus       124 qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~  199 (277)
T cd05036         124 DVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRK----GGRAMLPIKWMPPEAFLDGIFT  199 (277)
T ss_pred             HHHHHHHHHHHCCEeecccchheEEEeccCCCcceEeccCccccccCCccceec----CCCCCccHhhCCHHHHhcCCcC
Confidence            2  336788999999999999999998521 23589999999987743211000    0001123467788888777788


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFFL  536 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~l  536 (766)
                      ...|++++...+.+++
T Consensus       200 ~~~DiwslG~il~el~  215 (277)
T cd05036         200 SKTDVWSFGVLLWEIF  215 (277)
T ss_pred             chhHHHHHHHHHHHHH
Confidence            8899999988776654

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.35  E-value=7.4e-12  Score=131.25  Aligned_cols=184  Identities=18%  Similarity=0.181  Sum_probs=115.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..+|+|++|+||+|++  +|+.||+|+........                                  ..      +-.
T Consensus         7 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~----------------------------------~~------~~~   46 (286)
T cd07847           7 SKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDP----------------------------------VI------KKI   46 (286)
T ss_pred             eeecccCCeEEEEEEECCCCcEEEEEEEeecccCc----------------------------------cc------cHH
Confidence            5689999999999999  58999999873221000                                  00      001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|+..+..+    .+..-+.+...+ ......+++|||++|..+..+... ...++...+...+.+  ..+..+|..|
T Consensus        47 ~~~e~~~l~~~----~h~~i~~~~~~~-~~~~~~~~v~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~ql~~~l~~LH~~~  120 (286)
T cd07847          47 ALREIRMLKQL----KHPNLVNLIEVF-RRKRKLHLVFEYCDHTVLNELEKN-PRGVPEHLIKKIIWQTLQAVNFCHKHN  120 (286)
T ss_pred             HHHHHHHHHhC----CCCCEeeeeeEE-eeCCEEEEEEeccCccHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33444444433    222222222333 334567999999999888776432 223444444444333  2367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|++|.||+++.  ++.++++|||++..+.......      ....+...+++++.... ...+...|++++...+.
T Consensus       121 i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~  192 (286)
T cd07847         121 CIHRDVKPENILITK--QGQIKLCDFGFARILTGPGDDY------TDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFA  192 (286)
T ss_pred             ceecCCChhhEEEcC--CCcEEECccccceecCCCcccc------cCcccccccCCHHHHhCCCCcCchhhhHHHHHHHH
Confidence            999999999999985  7899999999999876543210      00112334555666543 23456789999987776


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       193 ~l~  195 (286)
T cd07847         193 ELL  195 (286)
T ss_pred             HHH
Confidence            654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.35  E-value=1.2e-11  Score=129.10  Aligned_cols=183  Identities=16%  Similarity=0.105  Sum_probs=109.3

Q ss_pred             cccccceeEEEEEee-c---CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL-K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       300 PIgsaSiGQVhrA~l-~---G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      .||.|+||+||+|.. +   ...|++|..+......                                         .+.
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~-----------------------------------------~~~   40 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPD-----------------------------------------EQL   40 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChH-----------------------------------------HHH
Confidence            489999999999986 3   4578888653321110                                         112


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcC----CCHHHHHHHH--HHHHH
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELG----VDRKRLGRYA--VESYL  447 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g----~d~~~la~~l--v~~~l  447 (766)
                      .|.+|+..+..+     ++++|  .+.+.  ......+|+|||++|++|.++.......    .+...+....  +-..+
T Consensus        41 ~~~~e~~~~~~l-----~h~ni--i~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l  113 (269)
T cd05042          41 LFLQEVQPYREL-----NHPNV--LQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGL  113 (269)
T ss_pred             HHHHHHHHHHhC-----CCCCc--ceEEEEECCCCceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHH
Confidence            344555444333     22332  22222  2345689999999999999865322111    1222222222  22346


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-------CCCC
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-------GVLV  520 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-------G~~~  520 (766)
                      ..+|..|++|+|+||.||+++.  ++.++++|||++...........    .........++++++...       ...+
T Consensus       114 ~~lH~~~ivH~dlkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~~~~  187 (269)
T cd05042         114 LWLHQADFIHSDLALRNCQLTA--DLSVKIGDYGLALEQYPEDYYIT----KDCHAVPLRWLAPELVEIRGQDLLPKDQT  187 (269)
T ss_pred             HHHHhcCEecccccHhheEecC--CCcEEEeccccccccccchheec----cCCCCCcccccCHHHHhhccccccccccc
Confidence            7889999999999999999986  88999999999865433211000    000112344667776643       1234


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFFL  536 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~l  536 (766)
                      ...|++++.-.+.+++
T Consensus       188 ~~~DiwslG~~l~el~  203 (269)
T cd05042         188 KKSNIWSLGVTMWELF  203 (269)
T ss_pred             hhhHHHHHHHHHHHHH
Confidence            5678998887666554

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.35  E-value=5.3e-12  Score=131.98  Aligned_cols=186  Identities=17%  Similarity=0.175  Sum_probs=119.3

Q ss_pred             ccccccceeEEEEEeec------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.||.|++|.||+|+++      |+.||||+.++....                                         .
T Consensus        10 ~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~-----------------------------------------~   48 (284)
T cd05038          10 KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE-----------------------------------------Q   48 (284)
T ss_pred             eeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch-----------------------------------------H
Confidence            67999999999999972      689999988543221                                         0


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeee--cc--CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EY--TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SY  446 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~--st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~  446 (766)
                      .+-+|.+|.+.+..+.     +++  +++.+.  ..  ....+++|||++|++|.++........+...+...+.+  ..
T Consensus        49 ~~~~~~~ei~~l~~l~-----~~~--i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~a  121 (284)
T cd05038          49 HRSDFEREIEILRTLD-----HEN--IVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKG  121 (284)
T ss_pred             HHHHHHHHHHHHHhCC-----CCC--hheEEeeeecCCCCceEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHH
Confidence            1123444444443331     222  223221  22  23579999999999999876433323454444433322  23


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004234          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (766)
Q Consensus       447 l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~  526 (766)
                      +..+|..|++|+|++|.||+++.  ++.++|.|||++..+.........   .........++.++....+..+...|++
T Consensus       122 L~~lH~~~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~Di~  196 (284)
T cd05038         122 MDYLGSQRYIHRDLAARNILVES--EDLVKISDFGLAKVLPEDKDYYYV---KEPGESPIFWYAPECLRTSKFSSASDVW  196 (284)
T ss_pred             HHHHHhCCeecCCCCHHhEEEcC--CCCEEEcccccccccccCCcceec---cCCCCCcccccCcHHHccCCCCcccchH
Confidence            67789999999999999999986  799999999999988643221000   0001122335566666666667788999


Q ss_pred             HHHHHHHHHHH
Q 004234          527 AVRRTAQFFLN  537 (766)
Q Consensus       527 ~l~~~i~~~l~  537 (766)
                      ++...+.+++.
T Consensus       197 slG~~l~el~t  207 (284)
T cd05038         197 SFGVTLYELFT  207 (284)
T ss_pred             HHhhhhheeec
Confidence            99877766653

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.35  E-value=1.3e-11  Score=127.11  Aligned_cols=187  Identities=18%  Similarity=0.106  Sum_probs=116.3

Q ss_pred             cccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      .+.||+|++|+||+|+.  +|+.|++|+....-....                               ..+..+.+.   
T Consensus         5 ~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~-------------------------------~~~~~~~~~---   50 (258)
T cd06632           5 GELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQT-------------------------------GQEAVKQLE---   50 (258)
T ss_pred             cceeeecCCceEEEEEEcCCCcEEEEEEEEEcccccc-------------------------------chHHHHHHH---
Confidence            36899999999999998  589999998743211110                               011111222   


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~  453 (766)
                         +|..-+..+    .+..-+.+... .......+++|||++|.+|.++.... ...+...+...+  +-..+..+|..
T Consensus        51 ---~e~~~l~~~----~h~~i~~~~~~-~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~  121 (258)
T cd06632          51 ---QEIALLSKL----QHPNIVQYLGT-EREEDNLYIFLELVPGGSLAKLLKKY-GSFPEPVIRLYTRQILLGLEYLHDR  121 (258)
T ss_pred             ---HHHHHHHhc----CCCCchheeee-EecCCeEEEEEEecCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence               233222222    12111222222 22335679999999999998875322 123433332222  22346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~-~~~~~D~~~l~~~i  532 (766)
                      |++|+|++|+||+++.  ++.++|+|||+...+.....       .....++..++.++....+. .+...|++++...+
T Consensus       122 ~i~H~dl~~~ni~~~~--~~~~kl~d~~~~~~~~~~~~-------~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l  192 (258)
T cd06632         122 NTVHRDIKGANILVDT--NGVVKLADFGMAKQVVEFSF-------AKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTV  192 (258)
T ss_pred             CcccCCCCHHHEEECC--CCCEEEccCccceecccccc-------ccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHH
Confidence            9999999999999985  88999999999887654331       11123455567777765544 56678999988766


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       193 ~~l~  196 (258)
T cd06632         193 LEMA  196 (258)
T ss_pred             HHHH
Confidence            6554

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.35  E-value=1.1e-11  Score=128.08  Aligned_cols=183  Identities=19%  Similarity=0.169  Sum_probs=118.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +++|.|++|.||+|..  +++.+++|+........                                    ..      .
T Consensus         9 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~------------------------------------~~------~   46 (262)
T cd06613           9 QRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDD------------------------------------FE------I   46 (262)
T ss_pred             EEecCCCceEEEEeEecCCCCEEEEEEEEcCchhh------------------------------------HH------H
Confidence            6899999999999998  58899999884321110                                    01      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|...+.++    . ++++ .+...+ ......+++|||++|..|.++.......++...+...+.+  ..+..+|..
T Consensus        47 ~~~e~~~l~~~----~-h~~i~~~~~~~-~~~~~~~l~~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~  120 (262)
T cd06613          47 IQQEISMLKEC----R-HPNIVAYFGSY-LRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHET  120 (262)
T ss_pred             HHHHHHHHHhC----C-CCChhceEEEE-EeCCEEEEEEeCCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            22333333333    1 2222 222222 3345679999999999999875433234555544433332  236778999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC---CCCCCCCHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG---VLVPTGDTTAVRR  530 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG---~~~~~~D~~~l~~  530 (766)
                      |++|+|++|.||+++.  ++.++++|||++..+.......      ....++..++++++....   ..+...|++++..
T Consensus       121 ~i~h~dl~p~ni~i~~--~~~~~l~d~g~~~~~~~~~~~~------~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~  192 (262)
T cd06613         121 GKIHRDIKGANILLTE--DGDVKLADFGVSAQLTATIAKR------KSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGI  192 (262)
T ss_pred             CceecCCChhhEEECC--CCCEEECccccchhhhhhhhcc------ccccCCccccCchhhcccccCCcCchhhhHHHHH
Confidence            9999999999999986  8899999999988765432110      011234556777776654   5566789999887


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       193 ~l~~~~t  199 (262)
T cd06613         193 TAIELAE  199 (262)
T ss_pred             HHHHHHh
Confidence            7666543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.35  E-value=1e-11  Score=131.04  Aligned_cols=181  Identities=19%  Similarity=0.233  Sum_probs=117.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|..  +|+.||+|+...+....                                   ...      +
T Consensus        11 ~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~-----------------------------------~~~------~   49 (284)
T cd06620          11 SDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSS-----------------------------------VRK------Q   49 (284)
T ss_pred             HHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcch-----------------------------------HHH------H
Confidence            5799999999999998  49999999874332111                                   111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh-C
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS-H  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~-~  453 (766)
                      +.+|...+..+     +++++.-..-+.......+|||||++|++|.++.... ..++...+.....  ...+..+|. +
T Consensus        50 ~~~E~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~  123 (284)
T cd06620          50 ILRELQIMHEC-----RSPYIVSFYGAFLNENNICMCMEFMDCGSLDRIYKKG-GPIPVEILGKIAVAVVEGLTYLYNVH  123 (284)
T ss_pred             HHHHHHHHHHc-----CCCCcceEeeeEecCCEEEEEEecCCCCCHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            33444444333     2233333333333456789999999999998864321 1233333322222  223566775 7


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|.||++++  ++.++++|||++..+......        ...+...+++++....+..+...|++++...+.
T Consensus       124 ~i~H~dl~p~nil~~~--~~~~~l~d~gl~~~~~~~~~~--------~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~  193 (284)
T cd06620         124 RIMHRDIKPSNILVNS--RGQIKLCDFGVSGELINSIAD--------TFVGTSTYMSPERIQGGKYTVKSDVWSLGISII  193 (284)
T ss_pred             CeeccCCCHHHEEECC--CCcEEEccCCcccchhhhccC--------ccccCcccCCHHHHccCCCCccchHHHHHHHHH
Confidence            9999999999999985  889999999998765332211        123456677788776676777889999987776


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       194 ~l~  196 (284)
T cd06620         194 ELA  196 (284)
T ss_pred             HHH
Confidence            655

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.35  E-value=9e-12  Score=130.99  Aligned_cols=186  Identities=13%  Similarity=0.140  Sum_probs=116.9

Q ss_pred             ccccccceeEEEEEeec-------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||.|++|.||+|+..       ++.||||+.+......                                   ...  
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~--   53 (283)
T cd05091          11 EELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGP-----------------------------------LRE--   53 (283)
T ss_pred             HHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHH-----------------------------------HHH--
Confidence            46899999999999872       4789999874322110                                   111  


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRK  436 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~~  436 (766)
                          .|..|...+..    +.+..-+.+.... ......++++||+++..+.++.....               ...+..
T Consensus        54 ----~~~~e~~~~~~----l~h~~iv~~~~~~-~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  124 (283)
T cd05091          54 ----EFKHEAMMRSR----LQHPNIVCLLGVV-TKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPA  124 (283)
T ss_pred             ----HHHHHHHHHhc----CCCCCcCeEEEEE-cCCCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHH
Confidence                12233332222    2222212222222 22356789999999999988653221               112233


Q ss_pred             HHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004234          437 RLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  514 (766)
Q Consensus       437 ~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~  514 (766)
                      .+...+.+  ..+..+|..|++|+|+||.||++.+  ++.++++|||++..+........    .+.....+.+++++..
T Consensus       125 ~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~  198 (283)
T cd05091         125 DFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFD--KLNVKISDLGLFREVYAADYYKL----MGNSLLPIRWMSPEAI  198 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHcCccccccchhheEecC--CCceEecccccccccccchheee----ccCccCCccccCHHHH
Confidence            33222222  3367889999999999999999985  78999999999887754322110    0111224568888888


Q ss_pred             HcCCCCCCCCHHHHHHHHHHHH
Q 004234          515 QMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       515 ~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ..+..++..|++++...+.+++
T Consensus       199 ~~~~~~~~~Dv~slG~~l~el~  220 (283)
T cd05091         199 MYGKFSIDSDIWSYGVVLWEVF  220 (283)
T ss_pred             hcCCCCcchhHHHHHHHHHHHH
Confidence            7788888899999988776654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.35  E-value=5.2e-12  Score=134.55  Aligned_cols=182  Identities=13%  Similarity=0.083  Sum_probs=111.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..||.|++|.||+|+.  +|+.||+|..+.......                                         ..+
T Consensus        12 ~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~-----------------------------------------~~~   50 (301)
T cd07873          12 DKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGA-----------------------------------------PCT   50 (301)
T ss_pred             eEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCc-----------------------------------------hhH
Confidence            6899999999999998  589999998743321110                                         001


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|...+.++    .+ +++ .+..++ ......+++|||++| ++.+.........+...+...+.+  ..+..+|..
T Consensus        51 ~~~E~~~l~~l----~h-~nI~~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~  123 (301)
T cd07873          51 AIREVSLLKDL----KH-ANIVTLHDII-HTEKSLTLVFEYLDK-DLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRR  123 (301)
T ss_pred             HHHHHHHHHhc----CC-CCcceEEEEE-ecCCeEEEEEecccc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            22344434333    22 322 222222 234567999999986 565543322233444444433322  347788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i  532 (766)
                      |++|+|+||+||+++.  ++.++++|||++..........-      .......+++++.... ...+...|++++...+
T Consensus       124 ~i~H~dlkp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~------~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l  195 (301)
T cd07873         124 KVLHRDLKPQNLLINE--RGELKLADFGLARAKSIPTKTYS------NEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIF  195 (301)
T ss_pred             CeeCCCCCHHHEEECC--CCcEEECcCcchhccCCCCCccc------ccceeecccCcHHHhCCCCCccHHHHHHHHHHH
Confidence            9999999999999986  88999999999876543221100      0112345666665543 2244567899988776


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       196 ~el~  199 (301)
T cd07873         196 YEMS  199 (301)
T ss_pred             HHHH
Confidence            6654

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.35  E-value=1.5e-11  Score=125.60  Aligned_cols=187  Identities=17%  Similarity=0.092  Sum_probs=123.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||.|++|.||+|..  +|+.|++|+.+.....                                  ...      .-.
T Consensus         6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------------------------~~~------~~~   45 (260)
T cd06606           6 ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDS----------------------------------EEE------LEA   45 (260)
T ss_pred             eEeeecCceEEEEEEECCCCcEEEEEEeeccccc----------------------------------hHH------HHH
Confidence            6899999999999999  4999999987433211                                  000      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC--CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s--t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      +.+|...+.++.     ++++.-+.-.....  ...+++|||++|.+|.++..... .++...+...+.+  ..+..+|.
T Consensus        46 ~~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~  119 (260)
T cd06606          46 LEREIRILSSLQ-----HPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFG-KLPEPVIRKYTRQILEGLAYLHS  119 (260)
T ss_pred             HHHHHHHHHHcC-----CCCEeeEEEEEecCCCCeEEEEEEecCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            233333344332     23332222222223  56799999999999998754322 3444444433322  23677899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      .|++|+|++|.||++++  ++.++|+|||............    ......++..++.++....+..+...|++++...+
T Consensus       120 ~~~~h~dl~p~ni~i~~--~~~~~l~d~~~~~~~~~~~~~~----~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il  193 (260)
T cd06606         120 NGIVHRDIKGANILVDS--DGVVKLADFGCAKRLGDIETGE----GTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTV  193 (260)
T ss_pred             CCccccCCCHHHEEEcC--CCCEEEcccccEEecccccccc----cccCCCCCccccCHhhhcCCCCCchhhHHHHHHHH
Confidence            99999999999999986  8899999999999887654210    01123456677788888777677788999998877


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       194 ~~l~~  198 (260)
T cd06606         194 IEMAT  198 (260)
T ss_pred             HHHHh
Confidence            66654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.35  E-value=1.2e-11  Score=127.37  Aligned_cols=127  Identities=24%  Similarity=0.204  Sum_probs=84.2

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004234          407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (766)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (766)
                      ....+++|||++|++|.++..... ..+...+...+.+  ..+..+|..|++|+|++|.||++++  ++.++++|||++.
T Consensus        65 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~--~~~~~l~dfg~~~  141 (265)
T cd05579          65 KKNLYLVMEYLPGGDLASLLENVG-SLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDS--NGHLKLTDFGLSK  141 (265)
T ss_pred             CcEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcC--CCCEEEEecccch
Confidence            345699999999999988653221 3344443333222  2367889999999999999999986  8899999999887


Q ss_pred             ccChhhHHH--HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          485 SISPNIREG--LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       485 ~L~~~~r~~--l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      .........  ..........++..++.++....+..+...|++++...+.+++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~  195 (265)
T cd05579         142 VGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFL  195 (265)
T ss_pred             hcccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHH
Confidence            543321100  0000011123456677787776666677789999987766654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.35  E-value=8.2e-12  Score=131.26  Aligned_cols=182  Identities=17%  Similarity=0.119  Sum_probs=117.7

Q ss_pred             ccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       301 IgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      ||+|++|.||+|..  +|+.|++|+........                                       -..+-.+.
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~---------------------------------------~~~~~~~~   41 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKK---------------------------------------RKGEQMAL   41 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhh---------------------------------------hhhhHHHH
Confidence            68999999999987  59999999874321000                                       00122344


Q ss_pred             HHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          379 QEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      .|...+.++.     ++++ .+..++ +.....+++|||++|++|.+...... ..++...+...+  +-..+..+|..|
T Consensus        42 ~e~~~l~~l~-----~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~  115 (277)
T cd05577          42 NEKKILEKVS-----SRFIVSLAYAF-ETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRR  115 (277)
T ss_pred             HHHHHHHhCC-----CCCEeeeeeEE-ecCCeEEEEEecCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            5555555442     2332 222222 33456899999999999988653222 234444333322  223467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||++++  ++.++++|||.+..+......       ....+...++.++...-+..+...|++++...+.+
T Consensus       116 i~H~di~p~Nil~~~--~~~~~l~dfg~~~~~~~~~~~-------~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~  186 (277)
T cd05577         116 IVYRDLKPENVLLDD--HGNVRISDLGLAVELKGGKKI-------KGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYE  186 (277)
T ss_pred             cccCCCCHHHEEECC--CCCEEEccCcchhhhccCCcc-------ccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHH
Confidence            999999999999985  889999999988766432111       11123455677777766666777899999877665


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       187 l~  188 (277)
T cd05577         187 MI  188 (277)
T ss_pred             Hh
Confidence            54

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.35  E-value=8.4e-12  Score=133.71  Aligned_cols=190  Identities=17%  Similarity=0.178  Sum_probs=120.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|..  +|+.||||...+.....                                 ..      ..-.
T Consensus         7 ~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~------~~~~   47 (316)
T cd05574           7 KLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIK---------------------------------RN------KVKR   47 (316)
T ss_pred             eeecCCccEEEEEEEEcCCCcEEEEEEEeccccch---------------------------------HH------HHHH
Confidence            5799999999999999  48999999885431110                                 00      0012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~l~qI~  451 (766)
                      +..|...+..+.     +++  +++++.  +.....+++|||++|++|.++..... ..++...+...+  +...+..+|
T Consensus        48 ~~~e~~~l~~l~-----~~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH  120 (316)
T cd05574          48 VLTEQEILATLD-----HPF--LPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLH  120 (316)
T ss_pred             HHHHHHHHHhCC-----CCC--chhheeeeecCCEEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence            344444444442     222  333332  33456799999999999998754221 223433333322  223367789


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHH----------------HHH-------HHhhcCHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE----------------AFY-------GIYEKDADK  508 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~----------------l~~-------a~~~~D~~~  508 (766)
                      ..|++|+|+||.||+++.  ++.++|.|||++...+.........                ...       ....++..+
T Consensus       121 ~~~i~H~dlkp~Nili~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y  198 (316)
T cd05574         121 LLGIVYRDLKPENILLHE--SGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEY  198 (316)
T ss_pred             HCCeeccCCChHHeEEcC--CCCEEEeecchhhcccccccccccccccccccccccccchhhhcccccCCCCCCcCccCC
Confidence            999999999999999986  8899999999988765432111000                000       001234557


Q ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          509 VLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       509 v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +++++..-+..+...|++++...+.+++
T Consensus       199 ~aPE~~~~~~~~~~~Di~slG~ll~~l~  226 (316)
T cd05574         199 IAPEVISGDGHGSAVDWWTLGILLYEML  226 (316)
T ss_pred             cCHHHHcCCCCCchHHHHHHHHHHHHHh
Confidence            7788877666677889999988776654

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.35  E-value=1.2e-11  Score=128.58  Aligned_cols=182  Identities=17%  Similarity=0.171  Sum_probs=120.5

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.+|.|++|.||+|.+ ++..|++|+.+++-..                                           .-+|
T Consensus        12 ~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~-------------------------------------------~~~~   48 (260)
T cd05073          12 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMS-------------------------------------------VEAF   48 (260)
T ss_pred             eEecCccceEEEEEEecCCccEEEEecCCChhH-------------------------------------------HHHH
Confidence            6899999999999998 6788999987543110                                           0134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv--~~~l~qI~~~G  454 (766)
                      .+|+..+.++    .+..-+.+...+.+  ...+++|||++|++|.++.... ....+...+...+.  -..+..+|..|
T Consensus        49 ~~e~~~l~~l----~~~~i~~~~~~~~~--~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~  122 (260)
T cd05073          49 LAEANVMKTL----QHDKLVKLHAVVTK--EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN  122 (260)
T ss_pred             HHHHHHHHhc----CCCCcceEEEEEcC--CCeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCC
Confidence            4455444443    22223444444433  5679999999999998865322 12233333333222  23367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||+++.  ++.++++|||.+..+........     ........++++++...+..+...|++++...+.+
T Consensus       123 i~H~dl~p~ni~i~~--~~~~~l~d~~~~~~~~~~~~~~~-----~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~  195 (260)
T cd05073         123 YIHRDLRAANILVSA--SLVCKIADFGLARVIEDNEYTAR-----EGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLME  195 (260)
T ss_pred             ccccccCcceEEEcC--CCcEEECCCcceeeccCCCcccc-----cCCcccccccCHhHhccCCcCccccchHHHHHHHH
Confidence            999999999999985  88999999999987654221100     00122345777888877777888899999877766


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       196 l~  197 (260)
T cd05073         196 IV  197 (260)
T ss_pred             HH
Confidence            55

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.34  E-value=3.3e-12  Score=140.91  Aligned_cols=186  Identities=16%  Similarity=0.165  Sum_probs=111.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|..  +|+.||||+.......                             ...           .-.
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-----------------------------~~~-----------~~~   45 (372)
T cd07853           6 RPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQN-----------------------------LVS-----------CKR   45 (372)
T ss_pred             ceeeeCCCEEEEEEEECCCCCEEEEEeccccccc-----------------------------hHH-----------HHH
Confidence            6799999999999997  6999999976321110                             000           012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec----cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWE----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e----~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI  450 (766)
                      +.+|...+..+.    +..-+.+-.++..    .....+++|||+++ .+.+... ....++...+...+  +-..+..+
T Consensus        46 ~~~E~~~l~~l~----h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~-~~~~l~~~~~~~~~~qi~~aL~~L  119 (372)
T cd07853          46 VFRELKMLCFFK----HDNVLSALDILQPPHIDPFEEIYVVTELMQS-DLHKIIV-SPQPLSSDHVKVFLYQILRGLKYL  119 (372)
T ss_pred             HHHHHHHHHhCC----CCCcCCHhheecCCCccccceEEEEeecccc-CHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHH
Confidence            233444333332    1111122222211    11256999999986 4544331 12223444333332  22347889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVR  529 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~  529 (766)
                      |..|++|+|+||.||+++.  ++.++|+|||++...........     .-...+..++++++... ...+...|++++.
T Consensus       120 H~~~ivH~dlkp~Nili~~--~~~~kL~Dfg~a~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG  192 (372)
T cd07853         120 HSAGILHRDIKPGNLLVNS--NCVLKICDFGLARVEEPDESKHM-----TQEVVTQYYRAPEILMGSRHYTSAVDIWSVG  192 (372)
T ss_pred             HhCCeeCCCCChHHEEECC--CCCEEeccccceeecccCccccC-----CCCCcCCCcCCHHHHcCCCCCCcHHHHHhHH
Confidence            9999999999999999986  88999999999987644321111     00123445677776643 2345667999998


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       193 ~il~el~~  200 (372)
T cd07853         193 CIFAELLG  200 (372)
T ss_pred             HHHHHHHc
Confidence            87776653

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.34  E-value=7.3e-12  Score=132.12  Aligned_cols=123  Identities=15%  Similarity=0.147  Sum_probs=88.1

Q ss_pred             CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceec
Q 004234          408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  485 (766)
Q Consensus       408 t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~  485 (766)
                      ...+++|||++|++|.++.......++...+.....+  ..+..+|..|++|+|++|.||+++.  ++.++++|||++..
T Consensus        81 ~~~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~--~~~~kl~Dfg~~~~  158 (279)
T cd05111          81 ASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKS--DSIVQIADFGVADL  158 (279)
T ss_pred             CccEEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcC--CCcEEEcCCcccee
Confidence            4568999999999999876433333455444433322  3467889999999999999999985  88999999999987


Q ss_pred             cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          486 ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       486 L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +.+......    .....+...++.++....+..+...|++++...+.+++
T Consensus       159 ~~~~~~~~~----~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~  205 (279)
T cd05111         159 LYPDDKKYF----YSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMM  205 (279)
T ss_pred             ccCCCcccc----cCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHH
Confidence            755432211    11122344577788877777888899999987776655

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.34  E-value=1.6e-11  Score=127.30  Aligned_cols=182  Identities=16%  Similarity=0.130  Sum_probs=118.3

Q ss_pred             cccccceeEEEEEee--c---CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~---G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      -||.|++|+||+|.+  +   +..||+|+.++....                                         ..+
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~-----------------------------------------~~~   40 (257)
T cd05060           2 ELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA-----------------------------------------AGK   40 (257)
T ss_pred             ccCccCceeEEEeEeeccCCCcceEEEEecccccch-----------------------------------------HHH
Confidence            489999999999987  2   268999987433211                                         012


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHh
Q 004234          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILS  452 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~--~l~qI~~  452 (766)
                      -++.+|...+..+    .+..-+.+...+  .....+++|||++|++|.++..... ..+...+...+.+.  .+..+|.
T Consensus        41 ~~~~~e~~~l~~l----~h~~iv~~~~~~--~~~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lh~  113 (257)
T cd05060          41 KEFLREASVMAQL----DHPCIVRLIGVC--KGEPLMLVMELAPLGPLLKYLKKRR-EIPVSDLKELAHQVAMGMAYLES  113 (257)
T ss_pred             HHHHHHHHHHHhc----CCCCeeeEEEEE--cCCceEEEEEeCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHhh
Confidence            2344454444433    221112222222  2456799999999999998754222 34444444433332  3677899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHh--hcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIY--EKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~--~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      .|++|+|++|.||+++.  ++.++|+|||++..+.......     .+..  .....+++++....+..+...|++++..
T Consensus       114 ~~i~H~di~p~nili~~--~~~~kl~df~~~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  186 (257)
T cd05060         114 KHFVHRDLAARNVLLVN--RHQAKISDFGMSRALGAGSDYY-----RATTAGRWPLKWYAPECINYGKFSSKSDVWSYGV  186 (257)
T ss_pred             cCeeccCcccceEEEcC--CCcEEeccccccceeecCCccc-----ccccCccccccccCHHHhcCCCCCccchHHHHHH
Confidence            99999999999999986  8899999999998775432210     1100  1123577888888787888899999987


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       187 ~l~~~~  192 (257)
T cd05060         187 TLWEAF  192 (257)
T ss_pred             HHHHHH
Confidence            766554

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.34  E-value=9.7e-12  Score=130.14  Aligned_cols=183  Identities=19%  Similarity=0.147  Sum_probs=121.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..+|+|++|.||+|+.  +|+.|++|+......                              ..           ..-+
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~------------------------------~~-----------~~~~   45 (274)
T cd06609           7 ECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEA------------------------------ED-----------EIED   45 (274)
T ss_pred             hhhcCCCCeEEEEEEECCCCeEEEEEEeecccc------------------------------ch-----------HHHH
Confidence            5789999999999998  589999998732110                              00           0112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|.+.+..+.     ++++.-+..+.......+++|||++|++|.+.....  ..+...+...+.+  ..+..+|..|
T Consensus        46 ~~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~ql~~~l~~lh~~~  118 (274)
T cd06609          46 IQQEIQFLSQCR-----SPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPG--KLDETYIAFILREVLLGLEYLHEEG  118 (274)
T ss_pred             HHHHHHHHHHcC-----CCCeeeeeEEEEECCeEEEEEEeeCCCcHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            334444444332     233322222323346679999999999998875432  3444444443332  2356789999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||+++.  ++.++++|||++..+.......      ....+...++.++....+..++..|++++...+.+
T Consensus       119 i~h~dl~p~ni~i~~--~~~~~l~d~g~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~  190 (274)
T cd06609         119 KIHRDIKAANILLSE--EGDVKLADFGVSGQLTSTMSKR------NTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIE  190 (274)
T ss_pred             cccCCCCHHHEEECC--CCCEEEcccccceeeccccccc------ccccCCccccChhhhccCCCCchhhHHHHHHHHHH
Confidence            999999999999986  8899999999998886542111      00123455777888777667788999999887766


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       191 l~t  193 (274)
T cd06609         191 LAK  193 (274)
T ss_pred             HHh
Confidence            553

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.34  E-value=8.5e-12  Score=133.44  Aligned_cols=186  Identities=15%  Similarity=0.107  Sum_probs=117.3

Q ss_pred             ccccccceeEEEEEeec---------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~---------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      ++||+|++|.||+|...         +..||+|+.++.....                                      
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~--------------------------------------   65 (307)
T cd05098          24 KPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEK--------------------------------------   65 (307)
T ss_pred             eeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChH--------------------------------------
Confidence            68999999999999862         2469999886542211                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCC
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGV  433 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~  433 (766)
                         ..-++..|...+.++.    .++++ .+...+ ......+++|||++|++|.++.....               ..+
T Consensus        66 ---~~~~~~~e~~~l~~l~----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l  137 (307)
T cd05098          66 ---DLSDLISEMEMMKMIG----KHKNIINLLGAC-TQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQL  137 (307)
T ss_pred             ---HHHHHHHHHHHHHHhc----CCCCEeeEEEEE-ecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccC
Confidence               0012333444444332    22322 222222 33456899999999999998754321               113


Q ss_pred             CHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHH
Q 004234          434 DRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ  511 (766)
Q Consensus       434 d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~  511 (766)
                      +...+...+.+  ..+..+|..|++|+|+||.||++++  ++.++|+|||.+..+........  .  ........++++
T Consensus       138 ~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~--~~~~kL~dfg~a~~~~~~~~~~~--~--~~~~~~~~y~aP  211 (307)
T cd05098         138 SFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTE--DNVMKIADFGLARDIHHIDYYKK--T--TNGRLPVKWMAP  211 (307)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCcccccccHHheEEcC--CCcEEECCCcccccccccchhhc--c--ccCCCccceeCh
Confidence            33334333333  3467889999999999999999986  78999999999876643211100  0  001112456778


Q ss_pred             HHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          512 AMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       512 ~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +....+..+...|++++...+.+++
T Consensus       212 E~~~~~~~~~~~DvwslG~~l~el~  236 (307)
T cd05098         212 EALFDRIYTHQSDVWSFGVLLWEIF  236 (307)
T ss_pred             HHhccCCCCcHHHHHHHHHHHHHHH
Confidence            7776666777889999987766554

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.34  E-value=1.2e-11  Score=127.82  Aligned_cols=187  Identities=18%  Similarity=0.138  Sum_probs=120.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +++|.|++|+||+|..  +|..|++|+........                                         ..-+
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------------~~~~   45 (267)
T cd06610           7 EVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQT-----------------------------------------SVDE   45 (267)
T ss_pred             eeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcch-----------------------------------------HHHH
Confidence            6799999999999998  58999999873211100                                         0112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceee--eccCCCeEEEEeecCCCChhhhhhhhh--cCCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDE--LGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~--~e~st~~vLVMEyieG~~L~d~~~l~~--~g~d~~~la~~lv~--~~l~qI  450 (766)
                      +.+|+..+..+    . ++++  +.++  .......+++|||++|.++.+......  ..++...+...+.+  ..+..+
T Consensus        46 ~~~e~~~l~~l----~-~~~i--~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~l  118 (267)
T cd06610          46 LRKEVQAMSQC----N-HPNV--VKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYL  118 (267)
T ss_pred             HHHHHHHHHhc----C-CCCE--EEEEEEEeeCCEEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHH
Confidence            33444433332    1 2222  2222  233456799999999999998754321  23444444333322  236778


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVR  529 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~  529 (766)
                      |..|++|+|++|.||++++  ++.++|+|||++..+........ . ......+...++.++....+ ..+...|++++.
T Consensus       119 h~~~i~h~~l~p~ni~~~~--~~~~~l~df~~~~~~~~~~~~~~-~-~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG  194 (267)
T cd06610         119 HSNGQIHRDIKAGNILLGE--DGSVKIADFGVSASLADGGDRTR-K-VRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFG  194 (267)
T ss_pred             HhCCeecCCCCHHhEEEcC--CCCEEEcccchHHHhccCccccc-c-ccccccCChhhcChHHHccccCcCcccchHhHh
Confidence            9999999999999999986  78999999999987765432210 0 01112245567777777666 566778999998


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       195 ~i~~~l~~  202 (267)
T cd06610         195 ITAIELAT  202 (267)
T ss_pred             HHHHHHHh
Confidence            77666543

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.34  E-value=4e-12  Score=138.81  Aligned_cols=198  Identities=18%  Similarity=0.211  Sum_probs=121.2

Q ss_pred             HHHHhCCChhhhhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 004234          281 VEEELGAPLDDVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK  357 (766)
Q Consensus       281 ie~elG~~~eeiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~  357 (766)
                      +++|++..+.++...|.. ++||.|++|.||+|..  +|+.||||+........                          
T Consensus         2 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--------------------------   55 (343)
T cd07880           2 YRQEVNKTIWEVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSE--------------------------   55 (343)
T ss_pred             hhhhhhhhhhccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccch--------------------------
Confidence            355666666666666644 7899999999999998  69999999864321100                          


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee-----ccCCCeEEEEeecCCCChhhhhhhhhcC
Q 004234          358 RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSLDELG  432 (766)
Q Consensus       358 ~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~-----e~st~~vLVMEyieG~~L~d~~~l~~~g  432 (766)
                              ....      .+.+|+..+.++.    +..-+.+..++.     ......++||||+ |..+.++...  ..
T Consensus        56 --------~~~~------~~~~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~--~~  114 (343)
T cd07880          56 --------LFAK------RAYRELRLLKHMK----HENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDLGKLMKH--EK  114 (343)
T ss_pred             --------HHHH------HHHHHHHHHHhcC----CCCccceeeeecCCccccccceEEEEEecC-CCCHHHHHhc--CC
Confidence                    0011      2233444444332    111122222221     1123458999999 6678776432  22


Q ss_pred             CCHHHHHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHH
Q 004234          433 VDRKRLGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVL  510 (766)
Q Consensus       433 ~d~~~la~~lv--~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~  510 (766)
                      ++...+...+.  ...+..+|..|++|+|++|.||+++.  ++.++++|||++..+......         ......+++
T Consensus       115 l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~---------~~~~~~y~a  183 (343)
T cd07880         115 LSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNE--DCELKILDFGLARQTDSEMTG---------YVVTRWYRA  183 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcC--CCCEEEeecccccccccCccc---------cccCCcccC
Confidence            34333333222  23467889999999999999999985  889999999999876543211         122344556


Q ss_pred             HHHHHc-CCCCCCCCHHHHHHHHHHHH
Q 004234          511 QAMVQM-GVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       511 ~~l~~l-G~~~~~~D~~~l~~~i~~~l  536 (766)
                      ++.... ...+...|.+++...+.+++
T Consensus       184 PE~~~~~~~~~~~~Di~slG~ll~~l~  210 (343)
T cd07880         184 PEVILNWMHYTQTVDIWSVGCIMAEML  210 (343)
T ss_pred             HHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            666543 23456679998887766554

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.34  E-value=1.5e-11  Score=128.89  Aligned_cols=182  Identities=15%  Similarity=0.169  Sum_probs=113.9

Q ss_pred             ccccccceeEEEEEee--cCe--eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGE--EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~--~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      +.+|.|++|.||+|++  +|.  .|++|..+......                                         ..
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~-----------------------------------------~~   39 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD-----------------------------------------DH   39 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHH-----------------------------------------HH
Confidence            3689999999999998  354  46777663221110                                         01


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCHHH
Q 004234          375 IDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKR  437 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~~~  437 (766)
                      -+|.+|...+.++.    +++++  .+++.  ...+..+++|||++|++|.++.....               ..+....
T Consensus        40 ~~~~~E~~~l~~l~----~h~~i--v~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~  113 (270)
T cd05047          40 RDFAGELEVLCKLG----HHPNI--INLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ  113 (270)
T ss_pred             HHHHHHHHHHHhhc----cCCCe--eeEEEEEecCCCceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHH
Confidence            13455555555443    22332  22222  23455799999999999988653211               1123333


Q ss_pred             HHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004234          438 LGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (766)
Q Consensus       438 la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~  515 (766)
                      +...+.+  ..+..+|..|++|+|++|.||+++.  ++.++++|||++..........       .......+++++...
T Consensus       114 ~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~--~~~~kl~dfgl~~~~~~~~~~~-------~~~~~~~y~apE~~~  184 (270)
T cd05047         114 LLHFAADVARGMDYLSQKQFIHRDLAARNILVGE--NYVAKIADFGLSRGQEVYVKKT-------MGRLPVRWMAIESLN  184 (270)
T ss_pred             HHHHHHHHHHHHHHHHHCCEeecccccceEEEcC--CCeEEECCCCCccccchhhhcc-------CCCCccccCChHHHc
Confidence            3333322  3467889999999999999999986  8899999999876432211110       011233477777776


Q ss_pred             cCCCCCCCCHHHHHHHHHHHH
Q 004234          516 MGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       516 lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ....+...|++++...+.+++
T Consensus       185 ~~~~~~~~Di~slG~il~el~  205 (270)
T cd05047         185 YSVYTTNSDVWSYGVLLWEIV  205 (270)
T ss_pred             cCCCCchhhHHHHHHHHHHHH
Confidence            666777889999987766554

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.34  E-value=9.9e-12  Score=131.36  Aligned_cols=124  Identities=20%  Similarity=0.151  Sum_probs=86.8

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhh----------cCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCc
Q 004234          407 TTPQILTMEYVPGIKINRIQSLDE----------LGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGR  474 (766)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~----------~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~  474 (766)
                      ....+++|||++|.+|.++.....          ..++...+...+.+  ..+..+|..|++|+|++|.||+++.  ++.
T Consensus        91 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nili~~--~~~  168 (296)
T cd05051          91 DPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVGK--NYT  168 (296)
T ss_pred             CCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhceeecC--CCc
Confidence            367899999999999988653211          12344444444333  2367889999999999999999986  789


Q ss_pred             EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          475 LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       475 l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ++++|||++..+........    .........+++++....+..++..|++++...+.+++
T Consensus       169 ~~l~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  226 (296)
T cd05051         169 IKIADFGMSRNLYSSDYYRV----QGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEIL  226 (296)
T ss_pred             eEEccccceeecccCcceee----cCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHH
Confidence            99999999886643321110    11112245678888887777888899999987776654

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.34  E-value=1.4e-11  Score=129.87  Aligned_cols=182  Identities=17%  Similarity=0.173  Sum_probs=121.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +++++|++|+||+|.+  +++.|++|+.+....                                           .+-.
T Consensus        25 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-------------------------------------------~~~~   61 (286)
T cd06614          25 EKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-------------------------------------------NKEL   61 (286)
T ss_pred             HhccCCCCeEEEEEEEccCCcEEEEEEEecCch-------------------------------------------hHHH
Confidence            6899999999999999  489999998843321                                           0112


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|...+..+    .+ +++ .+...+ ......+++|||++|.+|.++.......++...+...+.+  ..+..+|..
T Consensus        62 ~~~e~~~l~~l----~~-~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~  135 (286)
T cd06614          62 IINEILIMKDC----KH-PNIVDYYDSY-LVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQ  135 (286)
T ss_pred             HHHHHHHHHHC----CC-CCeeEEEEEE-EECCEEEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            23333333332    12 332 222222 3346789999999999999976543223454444443333  336778999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|.||+++.  ++.++++|||....+.......      ....++..++.++...-+......|++++...+.
T Consensus       136 gi~H~dl~p~ni~i~~--~~~~~l~d~~~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~  207 (286)
T cd06614         136 NVIHRDIKSDNILLSK--DGSVKLADFGFAAQLTKEKSKR------NSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCI  207 (286)
T ss_pred             CeeeCCCChhhEEEcC--CCCEEECccchhhhhccchhhh------ccccCCcccCCHhHhcCCCCCCccccHHHHHHHH
Confidence            9999999999999985  8899999999987765432211      1122455667777766555677889999998777


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       208 ~l~~  211 (286)
T cd06614         208 EMAE  211 (286)
T ss_pred             HHHh
Confidence            6653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.34  E-value=8.1e-12  Score=133.40  Aligned_cols=182  Identities=18%  Similarity=0.161  Sum_probs=119.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|.|++|.||+|+.  +|+.|+||...-.....                                          .-.
T Consensus        25 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~------------------------------------------~~~   62 (296)
T cd06655          25 EKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPK------------------------------------------KEL   62 (296)
T ss_pred             EEEecCCCeEEEEEEEcCCCcEEEEEEEecccCch------------------------------------------HHH
Confidence            5799999999999997  69999999762110000                                          001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|...+..+    . ++++.-+.-+.......+++|||++|++|.++...  ...+...+...+.+  ..+..+|..|
T Consensus        63 ~~~e~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~l~~~~~~~i~~~l~~al~~LH~~~  135 (296)
T cd06655          63 IINEILVMKEL----K-NPNIVNFLDSFLVGDELFVVMEYLAGGSLTDVVTE--TCMDEAQIAAVCRECLQALEFLHANQ  135 (296)
T ss_pred             HHHHHHHHHhc----C-CCceeeeeeeEecCceEEEEEEecCCCcHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            23333333332    1 23332222122234567999999999999986532  23444444443322  3467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||+++.  ++.++++|||++..+.+.....      ....+...++.++...-+..+...|++++...+.+
T Consensus       136 i~H~dL~p~Nili~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~  207 (296)
T cd06655         136 VIHRDIKSDNVLLGM--DGSVKLTDFGFCAQITPEQSKR------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIE  207 (296)
T ss_pred             cccCCCCHHHEEECC--CCCEEEccCccchhcccccccC------CCcCCCccccCcchhcCCCCCchhhHHHHHHHHHH
Confidence            999999999999985  8899999999988776543211      11234566777887776666778899999877766


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       208 llt  210 (296)
T cd06655         208 MVE  210 (296)
T ss_pred             HHh
Confidence            553

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.34  E-value=6.4e-12  Score=130.72  Aligned_cols=185  Identities=17%  Similarity=0.107  Sum_probs=117.8

Q ss_pred             cccccceeEEEEEeec--------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARLK--------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       300 PIgsaSiGQVhrA~l~--------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      .||.|++|.||+|+..        ++.|+||....+....                                        
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~----------------------------------------   41 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQ----------------------------------------   41 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhcccchh----------------------------------------
Confidence            6899999999999972        2678899653321100                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh------cCCCHHHHHHHHHH-
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE------LGVDRKRLGRYAVE-  444 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~------~g~d~~~la~~lv~-  444 (766)
                       ..-.|.+|+..+..+     +++++.-..-+.......+++|||++|++|.+......      ...+...+.....+ 
T Consensus        42 -~~~~~~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  115 (269)
T cd05044          42 -EKKEFLKEAHLMSNF-----NHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDV  115 (269)
T ss_pred             -hHHHHHHHHHHHHhc-----CCCCeeeEeeeecCCCCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHH
Confidence             011344455544444     22333322222233456899999999999988653211      11333333333322 


Q ss_pred             -HHHHHHHhCCccccCCCCCcEEEeecCCC-----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004234          445 -SYLEQILSHGFFHADPHPGNIAVDDVNGG-----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  518 (766)
Q Consensus       445 -~~l~qI~~~GffHaDpHPGNILV~~~~~g-----~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~  518 (766)
                       ..+..+|..|++|+|++|.||+++.  ++     .++++|||++..+........    .+.......+++++...-+.
T Consensus       116 ~~~l~~lH~~~i~H~dl~p~nil~~~--~~~~~~~~~~l~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~  189 (269)
T cd05044         116 AKGCVYLEQMHFIHRDLAARNCLVSE--KGYDADRVVKIGDFGLARDIYKSDYYRK----EGEGLLPVRWMAPESLLDGK  189 (269)
T ss_pred             HHHHHHHHhCCcccCCCChheEEEec--CCCCCCcceEECCccccccccccccccc----CcccCCCccccCHHHHccCC
Confidence             2367789999999999999999986  44     799999999987643321100    01112235677888888888


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004234          519 LVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       519 ~~~~~D~~~l~~~i~~~l  536 (766)
                      .++..|++++...+.+++
T Consensus       190 ~~~~~Dv~slG~il~ell  207 (269)
T cd05044         190 FTTQSDVWSFGVLMWEIL  207 (269)
T ss_pred             cccchhHHHHHHHHHHHH
Confidence            888999999998777665

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.34  E-value=1.8e-11  Score=129.63  Aligned_cols=182  Identities=14%  Similarity=0.129  Sum_probs=120.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|..  +|+.|++|+.+-.  ..                              .          .+-.
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~--~~------------------------------~----------~~~~   62 (285)
T cd06648          25 VKIGEGSTGIVCIATDKSTGRQVAVKKMDLR--KQ------------------------------Q----------RREL   62 (285)
T ss_pred             eEeccCCCeEEEEEEECCCCCEEEEEEEecc--ch------------------------------h----------HHHH
Confidence            6899999999999997  5899999975210  00                              0          0001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|..-+..+     +++++.-+.-+.......+++|||++|++|.++...  ...+...+...+.+  ..+..+|..|
T Consensus        63 ~~~e~~~l~~~-----~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~~~  135 (285)
T cd06648          63 LFNEVVIMRDY-----QHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIATVCLAVLKALSFLHAQG  135 (285)
T ss_pred             HHHHHHHHHHc-----CCCChheEEEEEEcCCeEEEEEeccCCCCHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            23343333332     234333333333445678999999999999986533  23444444433322  2367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||+++.  ++.++|+|||+...+.......      ....+...+++++....+..+...|++++...+.+
T Consensus       136 i~H~dl~p~Nil~~~--~~~~~l~d~g~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~e  207 (285)
T cd06648         136 VIHRDIKSDSILLTS--DGRVKLSDFGFCAQVSKEVPRR------KSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIE  207 (285)
T ss_pred             eecCCCChhhEEEcC--CCcEEEcccccchhhccCCccc------ccccCCccccCHHHhcCCCCCCcccHHHHHHHHHH
Confidence            999999999999985  8899999999887664432111      01224566778888766666777899999887776


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       208 ll~  210 (285)
T cd06648         208 MVD  210 (285)
T ss_pred             HHh
Confidence            653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.34  E-value=1.2e-11  Score=129.39  Aligned_cols=118  Identities=14%  Similarity=0.043  Sum_probs=80.4

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCC-------cEEE
Q 004234          407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGG-------RLIF  477 (766)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g-------~l~L  477 (766)
                      ....+++|||++|+++..+........+...+...+.+  ..+..+|..|++|+|++|.||++..  ++       .+++
T Consensus        76 ~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~--~~~~~~~~~~~~l  153 (262)
T cd05077          76 DVENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAR--EGIDGECGPFIKL  153 (262)
T ss_pred             CCCCEEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEec--CCccCCCCceeEe
Confidence            45679999999999998765432233454444333322  3377889999999999999999974  33       3899


Q ss_pred             EeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCCHHHHHHHHHHHH
Q 004234          478 YDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       478 iDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~-lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      .|||++..+.....          ..++..+++++... .+..+...|++++...+.+++
T Consensus       154 ~d~g~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~  203 (262)
T cd05077         154 SDPGIPITVLSRQE----------CVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEIC  203 (262)
T ss_pred             CCCCCCccccCccc----------ccccccccChhhhcCCCCCCchhHHHHHHHHHHHHH
Confidence            99998876533210          12345577777665 344566789999987766554

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.34  E-value=1.6e-11  Score=127.54  Aligned_cols=182  Identities=15%  Similarity=0.120  Sum_probs=118.9

Q ss_pred             ccccceeEEEEEeec--CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          301 IAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       301 IgsaSiGQVhrA~l~--G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      ||.|++|.||+|+..  |+.||+|+..+.....                                 .+      .+-.+.
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~---------------------------------~~------~~~~~~   41 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVE---------------------------------TG------QQEHIF   41 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchh---------------------------------hh------HHHHHH
Confidence            689999999999993  8999999874321100                                 00      112344


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  456 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~Gff  456 (766)
                      +|...+.++    . ++++.-..-+....+..+++|||++|++|.+..... ..+....+...+  +-..+..+|..|++
T Consensus        42 ~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~i~~~l~~lH~~~~~  115 (262)
T cd05572          42 SEKEILEEC----N-HPFIVKLYRTFKDKKYIYMLMEYCLGGELWTILRDR-GLFDEYTARFYIACVVLAFEYLHNRGII  115 (262)
T ss_pred             HHHHHHHhC----C-CCCEeeeeeeEEcCCccEEEEecCCCCcHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhhCCcc
Confidence            555444433    2 232222111223345679999999999998865322 123333333322  23346889999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      |+|++|.||+++.  ++.++|+|||.+..+......       ....++..++.+++......+...|++++...+.+++
T Consensus       116 h~dl~~~nilv~~--~~~~~l~df~~~~~~~~~~~~-------~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~  186 (262)
T cd05572         116 YRDLKPENLLLDS--NGYVKLVDFGFAKKLKSGQKT-------WTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELL  186 (262)
T ss_pred             cCCCCHHHEEEcC--CCCEEEeeCCcccccCccccc-------ccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHH
Confidence            9999999999986  889999999999988664311       1123455677787776655677789999987766654

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.34  E-value=2e-11  Score=124.99  Aligned_cols=185  Identities=17%  Similarity=0.131  Sum_probs=120.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|..  +|+.|++|+.......                                  .+...      .
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------------------------~~~~~------~   45 (258)
T cd08215           6 KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMS----------------------------------EKERE------D   45 (258)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEeecccCC----------------------------------hHHHH------H
Confidence            5799999999999999  4899999987322111                                  00111      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh---hcCCCHHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYAVES--YLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~---~~g~d~~~la~~lv~~--~l~qI~  451 (766)
                      +..|.+.+..+.     ++++.-+.-........+++|||++|.+|.+.....   ...++...+...+.+.  .+..+|
T Consensus        46 ~~~e~~~l~~l~-----~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh  120 (258)
T cd08215          46 ALNEVKILKKLN-----HPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLH  120 (258)
T ss_pred             HHHHHHHHHhcC-----CCChhheEEEEecCCEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            223333333332     222222222222346789999999999998865432   1345555554444333  367899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|++|.||++++  ++.++++|||++.......  ...    ....+++.++.++.......+...|++++...
T Consensus       121 ~~~~~H~dl~~~nil~~~--~~~~~l~d~~~~~~~~~~~--~~~----~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~  192 (258)
T cd08215         121 SRKILHRDIKPQNIFLTS--NGLVKLGDFGISKVLSSTV--DLA----KTVVGTPYYLSPELCQNKPYNYKSDIWSLGCV  192 (258)
T ss_pred             hCCEecccCChHHeEEcC--CCcEEECCccceeecccCc--cee----cceeeeecccChhHhccCCCCccccHHHHHHH
Confidence            999999999999999985  7899999999998875543  111    11234555677777666666778899998876


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       193 ~~~l~  197 (258)
T cd08215         193 LYELC  197 (258)
T ss_pred             HHHHH
Confidence            65544

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.34  E-value=2e-11  Score=126.12  Aligned_cols=185  Identities=16%  Similarity=0.084  Sum_probs=120.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||.++.  +|+.|++|.....-.                             +.           ...-+
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~-----------------------------~~-----------~~~~~   45 (256)
T cd08221           6 RVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRL-----------------------------SE-----------KERRD   45 (256)
T ss_pred             eEecccCCceEEEEEEcCCCcEEEEEEEeeccc-----------------------------ch-----------hHHHH
Confidence            5799999999999988  689999997521100                             00           00113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|...+.++.    +..-+.+...+ ......+++|||++|++|.+..... ....+...+...+.+  ..+..+|..
T Consensus        46 ~~~e~~~l~~~~----h~~i~~~~~~~-~~~~~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~  120 (256)
T cd08221          46 ALNEIVILSLLQ----HPNIIAYYNHF-MDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKA  120 (256)
T ss_pred             HHHHHHHHHhCC----CCCeeEEEeEE-ecCCeEEEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            445655555542    22222333333 3346679999999999999865432 222444444433322  346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|.||+++.  ++.++++|||.+..+......      .....+...++++++......+...|++++...+.
T Consensus       121 ~i~h~dl~p~ni~~~~--~~~~kl~d~~~~~~~~~~~~~------~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~  192 (256)
T cd08221         121 GILHRDIKTLNIFLTK--AGLIKLGDFGISKILGSEYSM------AETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLY  192 (256)
T ss_pred             CccccCCChHhEEEeC--CCCEEECcCcceEEccccccc------ccccCCCccccCHhhcCCCCCCCcchhHHHHHHHH
Confidence            9999999999999986  889999999999877554310      01123456677777765544566789999987776


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       193 ~l~  195 (256)
T cd08221         193 ELL  195 (256)
T ss_pred             HHH
Confidence            654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.34  E-value=1.3e-11  Score=131.47  Aligned_cols=183  Identities=14%  Similarity=0.156  Sum_probs=114.6

Q ss_pred             ccccccceeEEEEEee--cCe--eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGE--EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~--~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      +.||.|++|+||+|++  +|.  .|++|..+......                                         ..
T Consensus         8 ~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------------~~   46 (297)
T cd05089           8 DVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASEN-----------------------------------------DH   46 (297)
T ss_pred             eeecCCCcceEEEEEecCCCCcceeEEEEccccCCHH-----------------------------------------HH
Confidence            5799999999999998  344  46888653211100                                         01


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCHHHH
Q 004234          375 IDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRL  438 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~~~l  438 (766)
                      -+|.+|...+.++.    +++++ .+... .......+++|||+++++|.++.....               ..++...+
T Consensus        47 ~~~~~E~~~l~~l~----~hp~iv~~~~~-~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  121 (297)
T cd05089          47 RDFAGELEVLCKLG----HHPNIINLLGA-CENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQL  121 (297)
T ss_pred             HHHHHHHHHHHhhc----CCCchhheEEE-EccCCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHH
Confidence            13555666555542    22332 22222 223456799999999999988653211               11233333


Q ss_pred             HHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004234          439 GRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (766)
Q Consensus       439 a~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l  516 (766)
                      ...+.+  ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..........       .......+++++....
T Consensus       122 ~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~  192 (297)
T cd05089         122 LQFASDVATGMQYLSEKQFIHRDLAARNVLVGE--NLASKIADFGLSRGEEVYVKKT-------MGRLPVRWMAIESLNY  192 (297)
T ss_pred             HHHHHHHHHHHHHHHHCCcccCcCCcceEEECC--CCeEEECCcCCCccccceeccC-------CCCcCccccCchhhcc
Confidence            333322  3478899999999999999999986  7899999999886432211110       0011234667777766


Q ss_pred             CCCCCCCCHHHHHHHHHHHH
Q 004234          517 GVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       517 G~~~~~~D~~~l~~~i~~~l  536 (766)
                      +..+...|++++...+.+++
T Consensus       193 ~~~~~~~DvwSlG~il~el~  212 (297)
T cd05089         193 SVYTTKSDVWSFGVLLWEIV  212 (297)
T ss_pred             CCCCchhhHHHHHHHHHHHH
Confidence            66677889999988776654

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.34  E-value=6.4e-12  Score=131.74  Aligned_cols=184  Identities=19%  Similarity=0.172  Sum_probs=117.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+........                                  ..      +-+
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~----------------------------------~~------~~~   45 (286)
T cd07832           6 GRIGEGAHGIVFKAKDRETGETVALKKVALRRLEG----------------------------------GI------PNQ   45 (286)
T ss_pred             eecccCCCcEEEEEEECCCCceEEEEEEEcccccc----------------------------------hh------hHH
Confidence            4689999999999998  58999999874321100                                  00      113


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|...+.++.     +++ +.+...+ ......++||||+ |.+|.+........++...+...+.+  ..+..+|..
T Consensus        46 ~~~e~~~l~~~~-----~~~i~~~~~~~-~~~~~~~~v~e~~-~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~  118 (286)
T cd07832          46 ALREIKALQACQ-----HPYVVKLLDVF-PHGSGFVLVMEYM-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHAN  118 (286)
T ss_pred             HHHHHHHHHhCC-----CCCCcceeeEE-ecCCeeEEEeccc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            344444444332     222 2222222 3356679999999 99998865433333454444433322  346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~~i  532 (766)
                      |++|+|+||.||+++.  ++.++++|||++..+.......+.     ...++..++++++.... ..++..|++++...+
T Consensus       119 ~i~H~dl~p~ni~~~~--~~~~~l~dfg~~~~~~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l  191 (286)
T cd07832         119 GIMHRDLKPANLLISA--DGVLKIADFGLARLFSEEEPRLYS-----HQVATRWYRAPELLYGARKYDPGVDLWAVGCIF  191 (286)
T ss_pred             CeecCCcCHHHEEEcC--CCcEEEeeeeecccccCCCCCccc-----cccCcccccCceeeeccccCCchhHHHHHHHHH
Confidence            9999999999999986  889999999999887654321111     11245556667665432 335678999988776


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       192 ~~l~  195 (286)
T cd07832         192 AELL  195 (286)
T ss_pred             HHHH
Confidence            6654

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.33  E-value=3.9e-12  Score=141.77  Aligned_cols=178  Identities=11%  Similarity=0.096  Sum_probs=115.6

Q ss_pred             ccccccceeEEEEEee----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      ..||.|++|.||+|..    .++.||||+...+.                                              
T Consensus        98 ~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~----------------------------------------------  131 (392)
T PHA03207         98 SSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGK----------------------------------------------  131 (392)
T ss_pred             EeecCCCCeEEEEEEEcCCccceeEEEEeccccc----------------------------------------------
Confidence            5799999999999986    25789999763220                                              


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          375 IDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                       ++.+|.+.+..+.    + +++ .+-..+ ......+++||++.| .+.+... ....+....+...+.+  ..+..+|
T Consensus       132 -~~~~E~~il~~l~----h-~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~-~~~~l~~~~~~~i~~ql~~aL~~LH  202 (392)
T PHA03207        132 -TPGREIDILKTIS----H-RAIINLIHAY-RWKSTVCMVMPKYKC-DLFTYVD-RSGPLPLEQAITIQRRLLEALAYLH  202 (392)
T ss_pred             -cHHHHHHHHHhcC----C-CCccceeeeE-eeCCEEEEEehhcCC-CHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHH
Confidence             0112333333331    2 222 222222 334567999999976 4444331 1223344443333322  3478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|+||.||+++.  ++.++|+|||++..+.......-.    ....++..++++++...+..+...|++++...
T Consensus       203 ~~givHrDlkp~Nill~~--~~~~~l~DfG~a~~~~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvi  276 (392)
T PHA03207        203 GRGIIHRDVKTENIFLDE--PENAVLGDFGAACKLDAHPDTPQC----YGWSGTLETNSPELLALDPYCAKTDIWSAGLV  276 (392)
T ss_pred             HCCccccCCCHHHEEEcC--CCCEEEccCccccccCcccccccc----cccccccCccCHhHhcCCCCCchhhHHHHHHH
Confidence            999999999999999986  889999999999876543211100    11235677888998887777788999999988


Q ss_pred             HHHHHH
Q 004234          532 AQFFLN  537 (766)
Q Consensus       532 i~~~l~  537 (766)
                      +.+++.
T Consensus       277 l~el~~  282 (392)
T PHA03207        277 LFEMSV  282 (392)
T ss_pred             HHHHHH
Confidence            777653

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.33  E-value=4.9e-12  Score=152.61  Aligned_cols=186  Identities=15%  Similarity=0.175  Sum_probs=134.6

Q ss_pred             ccccccceeEEEEEee---cCe----eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL---KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G~----~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      ..||.|.||-||+|+.   +|.    .||||..++...                                         .
T Consensus       698 ~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~-----------------------------------------~  736 (1025)
T KOG1095|consen  698 RVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSS-----------------------------------------E  736 (1025)
T ss_pred             eeeccccccceEEEEEecCCCCccceEEEEEeccccCC-----------------------------------------H
Confidence            5899999999999998   354    378887644322                                         2


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhh------hcCCCHHHHHHHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLD------ELGVDRKRLGRYAVE  444 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~------~~g~d~~~la~~lv~  444 (766)
                      .++.||.+||.+|..|.     +++| ..--|-.+ ....++++|||+|+.|-.+.+..      ...+...++....++
T Consensus       737 ~~~~~Fl~Ea~~m~~f~-----HpNiv~liGv~l~-~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~d  810 (1025)
T KOG1095|consen  737 QEVSDFLKEALLMSKFD-----HPNIVSLIGVCLD-SGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALD  810 (1025)
T ss_pred             HHHHHHHHHHHHHhcCC-----CcceeeEEEeecC-CCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHH
Confidence            35679999999999884     3433 22222222 67789999999999999877654      445667777777666


Q ss_pred             HH--HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004234          445 SY--LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (766)
Q Consensus       445 ~~--l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~  522 (766)
                      ..  ++++.+.+|||||+-..|.|++.  ...+++.||||++.+-..+.  |..--.  ..--...|.++...-|+.+.+
T Consensus       811 vA~G~~YLe~~~fvHRDLAaRNCLL~~--~r~VKIaDFGlArDiy~~~y--yr~~~~--a~lPvkWm~PEsl~d~iFtsk  884 (1025)
T KOG1095|consen  811 VAKGMNYLESKHFVHRDLAARNCLLDE--RRVVKIADFGLARDIYDKDY--YRKHGE--AMLPVKWMPPESLKDGIFTSK  884 (1025)
T ss_pred             HhhhhHHHHhCCCcCcchhhhheeecc--cCcEEEcccchhHhhhhchh--eeccCc--cccceecCCHHHHhhcccccc
Confidence            54  78889999999999999999986  68899999999995533221  111000  111245677777777888999


Q ss_pred             CCHHHHHHHHHHHHH
Q 004234          523 GDTTAVRRTAQFFLN  537 (766)
Q Consensus       523 ~D~~~l~~~i~~~l~  537 (766)
                      +|+++|...+-+++.
T Consensus       885 SDvWsFGVllWEifs  899 (1025)
T KOG1095|consen  885 SDVWSFGVLLWEIFS  899 (1025)
T ss_pred             cchhhhHHHHHHHHh
Confidence            999999987766553

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.33  E-value=2e-11  Score=129.10  Aligned_cols=183  Identities=19%  Similarity=0.221  Sum_probs=119.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|.+  +++.||+|+..+....                                         ..+-+
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~-----------------------------------------~~~~~   45 (287)
T cd06621           7 SRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNP-----------------------------------------DLQKQ   45 (287)
T ss_pred             EEeccCCceEEEEEEECCCCeEEEEEEEecCCch-----------------------------------------HHHHH
Confidence            6899999999999999  5899999987432110                                         01223


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhh-h--hcCCCHHHHHHHHHH--HHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSL-D--ELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l-~--~~g~d~~~la~~lv~--~~l~q  449 (766)
                      +.+|.+.+.++.     ++++ .+...+... .+..+|||||++|++|.++... .  ....+...+...+.+  ..+..
T Consensus        46 ~~~e~~~l~~l~-----h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~  120 (287)
T cd06621          46 ILRELEINKSCK-----SPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSY  120 (287)
T ss_pred             HHHHHHHHHhCC-----CCCeeeeeeEEEccCCCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            455555554442     2322 222233222 2356999999999999885431 1  112333333333222  23677


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|+|++|.||+++.  ++.++++|||++..+......        ...++..+++++....+..+...|++++.
T Consensus       121 lH~~~i~H~dl~~~nil~~~--~~~~~l~dfg~~~~~~~~~~~--------~~~~~~~y~~pE~~~~~~~~~~~Dv~slG  190 (287)
T cd06621         121 LHSRKIIHRDIKPSNILLTR--KGQVKLCDFGVSGELVNSLAG--------TFTGTSFYMAPERIQGKPYSITSDVWSLG  190 (287)
T ss_pred             HHHCCcccCCCCHHHEEEec--CCeEEEeeccccccccccccc--------cccCCccccCHHHhcCCCCCchhhHHHHH
Confidence            89999999999999999986  788999999998776543221        12234556777777666677788999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       191 ~il~~l~~  198 (287)
T cd06621         191 LTLLEVAQ  198 (287)
T ss_pred             HHHHHHHh
Confidence            87776653

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.33  E-value=1.5e-11  Score=127.64  Aligned_cols=194  Identities=14%  Similarity=0.104  Sum_probs=120.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|..  +|+.||+|+.++.......                              ...      ..-+
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~------------------------------~~~------~~~~   49 (268)
T cd06630           6 QQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSE------------------------------QEE------VVEA   49 (268)
T ss_pred             ceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchh------------------------------HHH------HHHH
Confidence            5799999999999998  6899999987533211100                              000      1123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +.+|++.+.++.    +..-+.+..++ ......+++|||++|++|.++... ....+...+...+  +-..+..+|..|
T Consensus        50 ~~~e~~~l~~l~----h~~iv~~~~~~-~~~~~~~~v~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~ql~~al~~LH~~~  123 (268)
T cd06630          50 LRKEIRLMARLN----HPHIIRMLGAT-CEDSHFNLFVEWMAGGSVSHLLSK-YGAFKEAVIINYTEQLLRGLSYLHENQ  123 (268)
T ss_pred             HHHHHHHHHHcC----CCceehhhcee-ccCCeEEEEEeccCCCcHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            445555555542    22222222222 234567999999999999987532 1223433333322  223467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||+++. ++..++|+|||+...+.......  ........+...++++++..-...+...|++++...+.+
T Consensus       124 i~H~~i~~~nil~~~-~~~~~~l~dfg~~~~~~~~~~~~--~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~  200 (268)
T cd06630         124 IIHRDVKGANLLIDS-TGQRLRIADFGAAARLAAKGTGA--GEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIE  200 (268)
T ss_pred             eecCCCCHHHEEEcC-CCCEEEEcccccccccccccccC--CccccccccccceeCHhHhccCCCCcccchHHHHHHHHH
Confidence            999999999999975 23469999999998876431110  000011123456677777655556677899999887766


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       201 l~~  203 (268)
T cd06630         201 MAT  203 (268)
T ss_pred             HHh
Confidence            653

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.33  E-value=1.3e-11  Score=128.90  Aligned_cols=184  Identities=16%  Similarity=0.129  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEeec-------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      ..||.|++|.||+|.+.       +..||+|....+...                                         
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~-----------------------------------------   50 (277)
T cd05032          12 RELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASM-----------------------------------------   50 (277)
T ss_pred             eEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCH-----------------------------------------
Confidence            67999999999999983       268999986432110                                         


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhc---------CCCHHHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL---------GVDRKRLGR  440 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~---------g~d~~~la~  440 (766)
                      .....+.+|+..+..+.     +++  +.+++.  ......+++|||++|++|.++......         ..+...+..
T Consensus        51 ~~~~~~~~e~~~l~~~~-----~~~--i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~  123 (277)
T cd05032          51 RERIEFLNEASVMKEFN-----CHH--VVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQ  123 (277)
T ss_pred             HHHHHHHHHHHHHHhCC-----CCc--eeEEEEEEcCCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHH
Confidence            01224455555554432     222  223332  334668999999999999986532111         122333333


Q ss_pred             HHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004234          441 YAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  518 (766)
Q Consensus       441 ~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~  518 (766)
                      .+.+  ..+..+|..|++|+|++|.||+++.  ++.++++|||++..+........    .+.......+++++...-+.
T Consensus       124 ~~~~i~~~l~~lH~~~i~H~di~p~nill~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~  197 (277)
T cd05032         124 MAAEIADGMAYLAAKKFVHRDLAARNCMVAE--DLTVKIGDFGMTRDIYETDYYRK----GGKGLLPVRWMAPESLKDGV  197 (277)
T ss_pred             HHHHHHHHHHHHHhCCccccccChheEEEcC--CCCEEECCcccchhhccCccccc----CCCCCccccccCHHHHhcCC
Confidence            3322  3467889999999999999999986  89999999999876644321000    01111234677888877777


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004234          519 LVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       519 ~~~~~D~~~l~~~i~~~l  536 (766)
                      .++..|++++...+.+++
T Consensus       198 ~~~~~Di~slG~il~el~  215 (277)
T cd05032         198 FTTKSDVWSFGVVLWEMA  215 (277)
T ss_pred             CCcccchHHHHHHHHHhh
Confidence            888899999987766554

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.33  E-value=1.2e-11  Score=128.31  Aligned_cols=127  Identities=13%  Similarity=0.093  Sum_probs=84.4

Q ss_pred             cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecce
Q 004234          406 YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM  483 (766)
Q Consensus       406 ~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv  483 (766)
                      ..+..+++|||+.|++|.++............+...+  +...+..+|..|++|+|++|.||++++  ++.++++|||++
T Consensus        68 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~--~~~~kl~dfg~~  145 (262)
T cd05058          68 SEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDE--SFTVKVADFGLA  145 (262)
T ss_pred             CCCCcEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcC--CCcEEECCcccc
Confidence            3445799999999999998754322223333333322  223467889999999999999999986  889999999999


Q ss_pred             eccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          484 GSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       484 ~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ..+..........  .........+++++....+..+...|++++...+.+++
T Consensus       146 ~~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~  196 (262)
T cd05058         146 RDIYDKEYYSVHN--HTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM  196 (262)
T ss_pred             ccccCCcceeecc--cccCcCCccccChhHhccCccchHHHHHHHHHHHHHHH
Confidence            8664422110000  00112234577777776666677789999987766654

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.32  E-value=8.8e-12  Score=145.94  Aligned_cols=124  Identities=15%  Similarity=0.141  Sum_probs=79.3

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCC-----------------CH-HHHHHHH---HHHHHHHHHhCCccccCCCCCcE
Q 004234          407 TTPQILTMEYVPGIKINRIQSLDELGV-----------------DR-KRLGRYA---VESYLEQILSHGFFHADPHPGNI  465 (766)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~-----------------d~-~~la~~l---v~~~l~qI~~~GffHaDpHPGNI  465 (766)
                      ....+|+|||+++++|.++........                 .+ ..++..+   +-..+.++|..|++|+|+||.||
T Consensus       207 ~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLKP~NI  286 (566)
T PLN03225        207 EDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQNI  286 (566)
T ss_pred             CCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCCHHHE
Confidence            456799999999999988653221100                 00 1111111   12347789999999999999999


Q ss_pred             EEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC----------------------CCC
Q 004234          466 AVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV----------------------PTG  523 (766)
Q Consensus       466 LV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~----------------------~~~  523 (766)
                      |++. .++.++|+|||++..+.......     .....+++.+++++...+....                      ...
T Consensus       287 Ll~~-~~~~~KL~DFGlA~~l~~~~~~~-----~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~  360 (566)
T PLN03225        287 IFSE-GSGSFKIIDLGAAADLRVGINYI-----PKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRF  360 (566)
T ss_pred             EEeC-CCCcEEEEeCCCccccccccccC-----CcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCc
Confidence            9984 35789999999998664321110     0112346677888765443222                      234


Q ss_pred             CHHHHHHHHHHHH
Q 004234          524 DTTAVRRTAQFFL  536 (766)
Q Consensus       524 D~~~l~~~i~~~l  536 (766)
                      |++++...+.+++
T Consensus       361 DVwSlGviL~el~  373 (566)
T PLN03225        361 DIYSAGLIFLQMA  373 (566)
T ss_pred             ccHHHHHHHHHHH
Confidence            9999998777665

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=9.7e-12  Score=141.79  Aligned_cols=183  Identities=19%  Similarity=0.184  Sum_probs=116.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|.||-|.|-.|+.  +|+.+|||+..-...-                                 -+..-..+.+|+-
T Consensus        18 kTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~---------------------------------s~s~~~~IerEIv   64 (786)
T KOG0588|consen   18 KTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSEL---------------------------------SSSQPAGIEREIV   64 (786)
T ss_pred             ccccCCCCceehhhhcccccceeEEEeecccccc---------------------------------ccccccchhhhhH
Confidence            5699999999999999  7999999998322100                                 0000011222221


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~--~l~qI~~~G  454 (766)
                            .|..    +.+ ++|---.-+|+-..+.+||.||++|+.|-++.- .+.++...+-+....+.  .+..+|..+
T Consensus        65 ------iMkL----i~H-pnVl~LydVwe~~~~lylvlEyv~gGELFdylv-~kG~l~e~eaa~ff~QIi~gv~yCH~~~  132 (786)
T KOG0588|consen   65 ------IMKL----IEH-PNVLRLYDVWENKQHLYLVLEYVPGGELFDYLV-RKGPLPEREAAHFFRQILDGVSYCHAFN  132 (786)
T ss_pred             ------HHHH----hcC-CCeeeeeeeeccCceEEEEEEecCCchhHHHHH-hhCCCCCHHHHHHHHHHHHHHHHHhhhc
Confidence                  1211    222 333222233455667899999999999998753 33334444434433332  256678999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC--CCCCCHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL--VPTGDTTAVRRTA  532 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~--~~~~D~~~l~~~i  532 (766)
                      |.|+|+||.|++++.  .++|++.||||+..-.+.   .+.    -...+.+.|++++++. |..  ....|+++=...+
T Consensus       133 icHRDLKpENlLLd~--~~nIKIADFGMAsLe~~g---klL----eTSCGSPHYA~PEIV~-G~pYdG~~sDVWSCGVIL  202 (786)
T KOG0588|consen  133 ICHRDLKPENLLLDV--KNNIKIADFGMASLEVPG---KLL----ETSCGSPHYAAPEIVS-GRPYDGRPSDVWSCGVIL  202 (786)
T ss_pred             ceeccCCchhhhhhc--ccCEeeeccceeecccCC---ccc----cccCCCcccCCchhhc-CCCCCCCccccchhHHHH
Confidence            999999999999987  566999999999864432   122    2346799999999884 332  2346888777655


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      ..+|
T Consensus       203 fALL  206 (786)
T KOG0588|consen  203 FALL  206 (786)
T ss_pred             HHHH
Confidence            5444

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.32  E-value=1.7e-11  Score=128.56  Aligned_cols=183  Identities=17%  Similarity=0.223  Sum_probs=111.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|+.  +|+.||||..++.....                                         .+.+
T Consensus         7 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------~~~~   45 (283)
T cd06617           7 EELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQ-----------------------------------------EQKR   45 (283)
T ss_pred             EEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcH-----------------------------------------HHHH
Confidence            5799999999999999  59999999875432211                                         0112


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l---~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      +..|.....+   .. +++++ .+...+ ...+..+++|||++| .+.++...   ....++...+...+.+  ..+..+
T Consensus        46 ~~~e~~~~~~---~~-~~~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~l  119 (283)
T cd06617          46 LLMDLDISMR---SV-DCPYTVTFYGAL-FREGDVWICMEVMDT-SLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYL  119 (283)
T ss_pred             HHHHHHHHHH---Hc-CCCCeeeeeEEE-ecCCcEEEEhhhhcc-cHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            2222222111   11 22322 222322 235668999999986 45554321   1122444444343333  336778


Q ss_pred             HhC-CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC----CCCCCCCH
Q 004234          451 LSH-GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG----VLVPTGDT  525 (766)
Q Consensus       451 ~~~-GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG----~~~~~~D~  525 (766)
                      |.. |++|+|+||+||+++.  ++.++++|||++..+.......       ...+...+++++.....    ..+...|+
T Consensus       120 H~~~~i~h~dlkp~nil~~~--~~~~kl~dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~~~~~Di  190 (283)
T cd06617         120 HSKLSVIHRDVKPSNVLINR--NGQVKLCDFGISGYLVDSVAKT-------IDAGCKPYMAPERINPELNQKGYDVKSDV  190 (283)
T ss_pred             hhcCCeecCCCCHHHEEECC--CCCEEEeecccccccccccccc-------cccCCccccChhhcCCcccccccCccccc
Confidence            886 9999999999999986  8899999999988765422110       01234456677765432    23566899


Q ss_pred             HHHHHHHHHHHH
Q 004234          526 TAVRRTAQFFLN  537 (766)
Q Consensus       526 ~~l~~~i~~~l~  537 (766)
                      +++...+.+++.
T Consensus       191 ~slG~~l~~l~~  202 (283)
T cd06617         191 WSLGITMIELAT  202 (283)
T ss_pred             hhhHHHHHHHHh
Confidence            999887766553

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.32  E-value=1.8e-11  Score=125.95  Aligned_cols=185  Identities=15%  Similarity=0.119  Sum_probs=119.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|..  +++.||||.....-..                                  .+.      .-.
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------------------------~~~------~~~   45 (256)
T cd08220           6 RVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMT----------------------------------KDE------RLA   45 (256)
T ss_pred             EEecccCceEEEEEEEcCCCcEEEEEEEeccccc----------------------------------cHH------HHH
Confidence            5799999999999998  5899999987322100                                  000      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|++.+.++.     ++++....-........+++|||++|++|.++..... ...+...+...+.+  ..+..+|..
T Consensus        46 ~~~e~~~l~~~~-----~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~  120 (256)
T cd08220          46 AQNECQVLKLLS-----HPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTK  120 (256)
T ss_pred             HHHHHHHHhhCC-----CCchhheeeeEecCCEEEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            344555444432     2322222212223456799999999999998754322 22444444443322  336788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|+||++++ .++.+++.|||++..+.......       ...+...+++++.......+...|++++...+.
T Consensus       121 ~i~h~dl~~~nil~~~-~~~~~~l~d~~~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~  192 (256)
T cd08220         121 LILHRDLKTQNILLDK-HKMVVKIGDFGISKILSSKSKAY-------TVVGTPCYISPELCEGKPYNQKSDIWALGCVLY  192 (256)
T ss_pred             CeecCCCCHHHEEEcC-CCCEEEEccCCCceecCCCcccc-------ccccCCcccCchhccCCCCCcccchHHHHHHHH
Confidence            9999999999999975 34568999999998876542211       012345677777777666677889999987766


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       193 ~l~  195 (256)
T cd08220         193 ELA  195 (256)
T ss_pred             HHH
Confidence            554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.32  E-value=1.2e-11  Score=130.26  Aligned_cols=180  Identities=17%  Similarity=0.240  Sum_probs=110.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|..  +|+.||+|+.+....+.                                   -...+.+|++
T Consensus         7 ~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~-----------------------------------~~~~~~~e~~   51 (286)
T cd06622           7 DELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDES-----------------------------------KFNQIIMELD   51 (286)
T ss_pred             hhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHH-----------------------------------HHHHHHHHHH
Confidence            5789999999999999  59999999774321110                                   0011122222


Q ss_pred             HHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh--hcCCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD--ELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~--Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~--~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      .....+  |+.++...+.             ..+..+++|||++|.+|.++....  ...++...+...+.+  ..+..+
T Consensus        52 ~l~~~~~~~i~~~~~~~~-------------~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~L  118 (286)
T cd06622          52 ILHKAVSPYIVDFYGAFF-------------IEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFL  118 (286)
T ss_pred             HHHhcCCCcHHhhhhhee-------------cCCeEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            222111  2222222211             134578999999999998765432  113444433333322  235667


Q ss_pred             Hh-CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC------CCCC
Q 004234          451 LS-HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL------VPTG  523 (766)
Q Consensus       451 ~~-~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~------~~~~  523 (766)
                      |. .|++|+|++|.||+++.  ++.++++|||++..+.......        ..+...+++++....+..      +...
T Consensus       119 H~~~~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~~  188 (286)
T cd06622         119 KEEHNIIHRDVKPTNVLVNG--NGQVKLCDFGVSGNLVASLAKT--------NIGCQSYMAPERIKSGGPNQNPTYTVQS  188 (286)
T ss_pred             HhcCCEeeCCCCHHHEEECC--CCCEEEeecCCcccccCCcccc--------CCCccCccCcchhcCCCCCccCCCCccc
Confidence            75 69999999999999986  8899999999987764332211        123445667777654432      5567


Q ss_pred             CHHHHHHHHHHHH
Q 004234          524 DTTAVRRTAQFFL  536 (766)
Q Consensus       524 D~~~l~~~i~~~l  536 (766)
                      |++++...+.+++
T Consensus       189 DiwslG~il~~l~  201 (286)
T cd06622         189 DVWSLGLSILEMA  201 (286)
T ss_pred             chHhHHHHHHHHH
Confidence            9999987776654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.32  E-value=1.5e-11  Score=127.75  Aligned_cols=185  Identities=14%  Similarity=0.091  Sum_probs=116.4

Q ss_pred             cccccceeEEEEEee----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       300 PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      .||+|++|.||+|.+    +++.||||+.+......                              .    .      .-
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~------------------------------~----~------~~   41 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDP------------------------------A----L------KD   41 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcH------------------------------H----H------HH
Confidence            489999999999976    47899999874332110                              0    0      11


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      ++..|..-+..+     +++++.-..-+. .....+++|||+++++|.++.... ...+...+...+.+  ..+..+|..
T Consensus        42 ~~~~e~~~l~~l-----~h~~i~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~al~~lH~~  114 (257)
T cd05116          42 ELLREANVMQQL-----DNPYIVRMIGIC-EAESWMLVMELAELGPLNKFLQKN-KHVTEKNITELVHQVSMGMKYLEET  114 (257)
T ss_pred             HHHHHHHHHHhC-----CCCCcceEEEEE-cCCCcEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            233444433333     223322111111 134568999999999998875422 23444444333322  346888999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||.||++++  ++.++++|||++..+..........   ........+++++....+..+...|++++...+.
T Consensus       115 ~i~H~dlkp~nill~~--~~~~kl~Dfg~~~~~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~  189 (257)
T cd05116         115 NFVHRDLAARNVLLVT--QHYAKISDFGLSKALGADENYYKAK---THGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMW  189 (257)
T ss_pred             CEeecccchhhEEEcC--CCeEEECCCccccccCCCCCeeeec---CCCCCCccccCHhHhccCCcCchhHHHHHHHHHH
Confidence            9999999999999986  7899999999998775432211000   0011235677788777677777889999987776


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       190 el~  192 (257)
T cd05116         190 EAF  192 (257)
T ss_pred             HHH
Confidence            654

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=1.8e-12  Score=132.82  Aligned_cols=188  Identities=22%  Similarity=0.227  Sum_probs=128.8

Q ss_pred             hccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004234          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (766)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (766)
                      ++|+- .|+|.|-||+||.|+.  ++--||+||..       +..+                          +......+
T Consensus        22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlf-------Ksqi--------------------------~~~~v~~q   68 (281)
T KOG0580|consen   22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLF-------KSQI--------------------------LKTQVEHQ   68 (281)
T ss_pred             hhccccccccCCccccEeEeeeccCCcEEEEeeee-------HHHH--------------------------HHhcchhh
Confidence            35665 7999999999999999  47899999971       1110                          01223344


Q ss_pred             HHHHHHHHHHH--HHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHH--HHH
Q 004234          371 LYQEIDYTQEA--ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYA--VES  445 (766)
Q Consensus       371 l~~ElDf~~EA--~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~l--v~~  445 (766)
                      +.+|+....-.  .|+-++...|.+             +.+.+|++||..++.+-..... ....++...-+..+  +..
T Consensus        69 lrREiEIqs~L~hpnilrlY~~fhd-------------~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~  135 (281)
T KOG0580|consen   69 LRREIEIQSHLRHPNILRLYGYFHD-------------SKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLAN  135 (281)
T ss_pred             hhheeEeecccCCccHHhhhhheec-------------cceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHH
Confidence            55554433222  266666665544             4567899999998887764331 22223333333333  233


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~  525 (766)
                      .+..+|..+++|||+||.|+|+..  +|.+++.|||-...-+...|..+        .+..+++.+++.+--......|.
T Consensus       136 Al~y~h~k~VIhRdiKpenlLlg~--~~~lkiAdfGwsV~~p~~kR~tl--------cgt~dyl~pEmv~~~~hd~~Vd~  205 (281)
T KOG0580|consen  136 ALLYCHLKRVIHRDIKPENLLLGS--AGELKIADFGWSVHAPSNKRKTL--------CGTLDYLPPEMVEGRGHDKFVDL  205 (281)
T ss_pred             HHHHhccCCcccCCCCHHHhccCC--CCCeeccCCCceeecCCCCceee--------ecccccCCHhhcCCCCccchhhH
Confidence            467789999999999999999986  89999999998887766566544        45677888888877667777899


Q ss_pred             HHHHHHHHHHHH
Q 004234          526 TAVRRTAQFFLN  537 (766)
Q Consensus       526 ~~l~~~i~~~l~  537 (766)
                      +.+....++|+-
T Consensus       206 w~lgvl~yeflv  217 (281)
T KOG0580|consen  206 WSLGVLCYEFLV  217 (281)
T ss_pred             HHHHHHHHHHHh
Confidence            988876666653

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.32  E-value=9e-12  Score=131.54  Aligned_cols=184  Identities=15%  Similarity=0.089  Sum_probs=114.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||+|++|.||+|..  +|+.||||..++.....                        .                 ...
T Consensus        11 ~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~------------------------~-----------------~~~   49 (291)
T cd07844          11 DKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEG------------------------A-----------------PFT   49 (291)
T ss_pred             EEEeecCCeEEEEEEEcCCCcEEEEEEEecccccC------------------------C-----------------chh
Confidence            6899999999999998  58999999875432111                        0                 001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|...+..+.     ++++.-..-+.......++||||++| +|.++.......++...+...+.+  ..+..+|..|
T Consensus        50 ~~~E~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~  123 (291)
T cd07844          50 AIREASLLKDLK-----HANIVTLHDIIHTKKTLTLVFEYLDT-DLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRR  123 (291)
T ss_pred             HHHHHHHHhhCC-----CcceeeEEEEEecCCeEEEEEecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            223444444432     23332222222334567999999997 777654322233444444443322  3477889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|++|.||+++.  ++.++++|||.+..........- .     ......++++++... ...+...|++++...+.
T Consensus       124 i~H~dl~p~nil~~~--~~~~kl~dfg~~~~~~~~~~~~~-~-----~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~  195 (291)
T cd07844         124 VLHRDLKPQNLLISE--RGELKLADFGLARAKSVPSKTYS-N-----EVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFY  195 (291)
T ss_pred             eecccCCHHHEEEcC--CCCEEECccccccccCCCCcccc-c-----cccccccCCcHHhhcCcccCcHHHHHHHHHHHH
Confidence            999999999999986  88999999999876532211100 0     011334555665432 33456679999987776


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       196 ~l~~  199 (291)
T cd07844         196 EMAT  199 (291)
T ss_pred             HHHh
Confidence            6653

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.32  E-value=1.2e-11  Score=132.50  Aligned_cols=186  Identities=13%  Similarity=0.092  Sum_probs=120.5

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||.|++|+||+|+.       .+..||||+.+......                                   .    
T Consensus        41 ~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~----   81 (302)
T cd05055          41 KTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSS-----------------------------------E----   81 (302)
T ss_pred             ceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChH-----------------------------------H----
Confidence            6899999999999975       24689999874432111                                   0    


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~--~~l  447 (766)
                        .-++.+|...+.++.    +++++ .+.. +.......+++|||+.|++|.++..... ...+...+.....+  ..+
T Consensus        82 --~~~~~~E~~~l~~l~----~h~~iv~~~~-~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l  154 (302)
T cd05055          82 --REALMSELKIMSHLG----NHENIVNLLG-ACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGM  154 (302)
T ss_pred             --HHHHHHHHHHHHhcc----CCCCcceEEE-EEecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence              013445555554442    22222 2222 2233456899999999999988754222 12444444443322  346


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~  527 (766)
                      ..+|..|++|+|++|.||++++  ++.++++|||++..+........    .+.......+++++....+..++..|+++
T Consensus       155 ~~lH~~~ivH~dlkp~Nil~~~--~~~~~l~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Diws  228 (302)
T cd05055         155 AFLASKNCIHRDLAARNVLLTH--GKIVKICDFGLARDIMNDSNYVV----KGNARLPVKWMAPESIFNCVYTFESDVWS  228 (302)
T ss_pred             HHHHHCCeehhhhccceEEEcC--CCeEEECCCcccccccCCCceee----cCCCCcccccCCHhhhccCCCCcHhHHHH
Confidence            7889999999999999999985  78899999999987654321100    11112345677888887777778889999


Q ss_pred             HHHHHHHHH
Q 004234          528 VRRTAQFFL  536 (766)
Q Consensus       528 l~~~i~~~l  536 (766)
                      +...+.+++
T Consensus       229 lGvil~el~  237 (302)
T cd05055         229 YGILLWEIF  237 (302)
T ss_pred             HHHHHHHHH
Confidence            987766554

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.32  E-value=8.9e-12  Score=133.21  Aligned_cols=184  Identities=13%  Similarity=0.134  Sum_probs=115.2

Q ss_pred             ccccccceeEEEEEee--cCe----eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~----~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.||+|++|+||+|++  +|+    .||+|+..+.....                                         
T Consensus        13 ~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------   51 (303)
T cd05110          13 KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPK-----------------------------------------   51 (303)
T ss_pred             cccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHH-----------------------------------------
Confidence            5799999999999998  454    57888764332111                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  449 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~q  449 (766)
                      ....+.+|...+..+     ++++ +.+...+  ......++|||++++.+.+........++...+....  +...+..
T Consensus        52 ~~~~~~~e~~~~~~l-----~h~niv~~~~~~--~~~~~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~  124 (303)
T cd05110          52 ANVEFMDEALIMASM-----DHPHLVRLLGVC--LSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMY  124 (303)
T ss_pred             HHHHHHHHHHHHHhC-----CCCCcccEEEEE--cCCCceeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            011244455444443     1233 2222222  2345689999999999988654322233433333322  2234678


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|+|+||.||+++.  ++.++|+|||++..+..........    .......+++++.......+...|++++.
T Consensus       125 LH~~~ivH~dikp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~~~~~----~~~~~~~y~~PE~~~~~~~~~~~DiwslG  198 (303)
T cd05110         125 LEERRLVHRDLAARNVLVKS--PNHVKITDFGLARLLEGDEKEYNAD----GGKMPIKWMALECIHYRKFTHQSDVWSYG  198 (303)
T ss_pred             HhhcCeeccccccceeeecC--CCceEEccccccccccCcccccccC----CCccccccCCHHHhccCCCChHHHHHHHH
Confidence            89999999999999999975  7899999999998775433211000    01112356667776656666778999998


Q ss_pred             HHHHHHH
Q 004234          530 RTAQFFL  536 (766)
Q Consensus       530 ~~i~~~l  536 (766)
                      ..+.+++
T Consensus       199 ~~l~el~  205 (303)
T cd05110         199 VTIWELM  205 (303)
T ss_pred             HHHHHHH
Confidence            7666554

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.32  E-value=1.6e-11  Score=129.60  Aligned_cols=186  Identities=18%  Similarity=0.099  Sum_probs=115.6

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      ..||.|++|+||+|..       ++..||+|+.+.+....                                        
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~----------------------------------------   50 (288)
T cd05050          11 RDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASAD----------------------------------------   50 (288)
T ss_pred             ccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHH----------------------------------------
Confidence            5799999999999986       35789999874332111                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------------
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------------  430 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------------  430 (766)
                       .+-+|.+|...+.++     +++++.-..-+.......+++|||++|++|.+......                     
T Consensus        51 -~~~~~~~ei~~l~~l-----~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  124 (288)
T cd05050          51 -MQADFQREAALMAEF-----DHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNP  124 (288)
T ss_pred             -HHHHHHHHHHHHHhc-----CCCchheEEEEEcCCCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccc
Confidence             011344454444443     22332222222233456799999999999988653211                     


Q ss_pred             cCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHH
Q 004234          431 LGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADK  508 (766)
Q Consensus       431 ~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~  508 (766)
                      ..++...+...+.+  ..+..+|..|++|+|++|.||+++.  ++.++++|||++..+....-..   . .........+
T Consensus       125 ~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~---~-~~~~~~~~~y  198 (288)
T cd05050         125 LPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVGE--NMVVKIADFGLSRNIYSADYYK---A-SENDAIPIRW  198 (288)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhheEecC--CCceEECccccceecccCcccc---c-cCCCccChhh
Confidence            11222223333222  2367889999999999999999985  8899999999987653321100   0 0000113457


Q ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          509 VLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       509 v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ++++....+..+...|++++...+.+++
T Consensus       199 ~aPE~~~~~~~~~~~Dv~slG~il~el~  226 (288)
T cd05050         199 MPPESIFYNRYTTESDVWAYGVVLWEIF  226 (288)
T ss_pred             cCHHHHhcCCCCchhHHHHHHHHHHHHH
Confidence            7788777677777889999987766554

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.32  E-value=1.7e-11  Score=129.63  Aligned_cols=188  Identities=16%  Similarity=0.166  Sum_probs=116.2

Q ss_pred             ccccccceeEEEEEee-----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||.|++|.||.|+.     +|+.||+|+.+......                            .    ....+    
T Consensus         6 ~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~----------------------------~----~~~~~----   49 (290)
T cd05613           6 KVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQ----------------------------K----AKTTE----   49 (290)
T ss_pred             eeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhh----------------------------c----chHHH----
Confidence            5689999999999986     48999999874321100                            0    00011    


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~  451 (766)
                        .+.+|.+.+.++.    +++++.-....-+.....+++|||++|++|.+..... ..+....+...+  +...+..+|
T Consensus        50 --~~~~e~~~l~~l~----~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~al~~lH  122 (290)
T cd05613          50 --HTRTERQVLEHIR----QSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQR-ERFKEQEVQIYSGEIVLALEHLH  122 (290)
T ss_pred             --HHHHHHHHHHhcc----cCCChhceeeEeecCCeEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence              1223433333332    2233222222222345568999999999998865322 234444444333  233478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCCHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVR  529 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG--~~~~~~D~~~l~  529 (766)
                      ..|++|+|++|.||+++.  +++++++|||++..+.........     ...+...+++++...-+  ......|++++.
T Consensus       123 ~~~i~H~dl~p~nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG  195 (290)
T cd05613         123 KLGIIYRDIKLENILLDS--NGHVVLTDFGLSKEFHEDEVERAY-----SFCGTIEYMAPDIVRGGDGGHDKAVDWWSMG  195 (290)
T ss_pred             hCCeeccCCCHHHeEECC--CCCEEEeeCccceecccccccccc-----cccCCcccCChhhccCCCCCCCccccHHHHH
Confidence            999999999999999986  889999999999877543211110     11234556667766432  245678999998


Q ss_pred             HHHHHHH
Q 004234          530 RTAQFFL  536 (766)
Q Consensus       530 ~~i~~~l  536 (766)
                      ..+.+++
T Consensus       196 ~~l~~ll  202 (290)
T cd05613         196 VLMYELL  202 (290)
T ss_pred             HHHHHHh
Confidence            7766554

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.32  E-value=1.6e-11  Score=137.97  Aligned_cols=85  Identities=14%  Similarity=0.066  Sum_probs=60.7

Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~  525 (766)
                      .+..+|..|++|+|++|.||++++  ++.++++|||++..+........    .........+++++....+...+..|+
T Consensus       251 aL~~LH~~~ivHrdlkp~NiLl~~--~~~~kL~DfGla~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv  324 (401)
T cd05107         251 GMEFLASKNCVHRDLAARNVLICE--GKLVKICDFGLARDIMRDSNYIS----KGSTFLPLKWMAPESIFNNLYTTLSDV  324 (401)
T ss_pred             HHHHHhcCCcCcccCCcceEEEeC--CCEEEEEecCcceeccccccccc----CCCcCCCCceeChHHhcCCCCCcHhHH
Confidence            367789999999999999999986  78999999999986533211000    000112345677887777777778899


Q ss_pred             HHHHHHHHHHH
Q 004234          526 TAVRRTAQFFL  536 (766)
Q Consensus       526 ~~l~~~i~~~l  536 (766)
                      +++...+.+++
T Consensus       325 wslGvil~e~l  335 (401)
T cd05107         325 WSFGILLWEIF  335 (401)
T ss_pred             HHHHHHHHHHH
Confidence            99987666554

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.32  E-value=2.2e-11  Score=128.64  Aligned_cols=188  Identities=15%  Similarity=0.130  Sum_probs=116.5

Q ss_pred             ccccccceeEEEEEee-----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||.|++|+||+|+.     +|+.||||+.+......                            .    .+      .
T Consensus         6 ~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~----------------------------~----~~------~   47 (288)
T cd05583           6 RVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQ----------------------------K----AK------T   47 (288)
T ss_pred             EEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHh----------------------------h----hh------H
Confidence            5799999999999986     36889999874210000                            0    00      0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQIL  451 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~  451 (766)
                      .-.+.+|...+.++.    +++++.............++||||++|++|.+.... ...++...+...+.  ...+..+|
T Consensus        48 ~~~~~~E~~~l~~~~----~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~~~~ql~~~l~~lH  122 (288)
T cd05583          48 AEHTRTERQVLEAVR----RCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQ-REHFTESEVRVYIAEIVLALDHLH  122 (288)
T ss_pred             HHHHHHHHHHHHhcc----CCcchhhhheeeecCCEEEEEEecCCCCcHHHHHhh-cCCcCHHHHHHHHHHHHHHHHHHH
Confidence            112334444444332    233332222222334567899999999999876432 12234343333222  23467889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC--CCCCCCHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV--LVPTGDTTAVR  529 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~--~~~~~D~~~l~  529 (766)
                      ..|++|+|+||.||+++.  ++.++++|||++..+.......     .....++..+++++....+.  .....|++++.
T Consensus       123 ~~~~~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG  195 (288)
T cd05583         123 QLGIIYRDIKLENILLDS--EGHVVLTDFGLSKEFLAEEEER-----AYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLG  195 (288)
T ss_pred             HCCeeccCCCHHHeEECC--CCCEEEEECccccccccccccc-----cccccCCccccCHHHhcCCCCCCcchhhhHHHH
Confidence            999999999999999986  7899999999988765432110     01123456677777765443  45678999988


Q ss_pred             HHHHHHH
Q 004234          530 RTAQFFL  536 (766)
Q Consensus       530 ~~i~~~l  536 (766)
                      ..+.+++
T Consensus       196 ~il~el~  202 (288)
T cd05583         196 VLTFELL  202 (288)
T ss_pred             HHHHHHH
Confidence            7766554

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.31  E-value=1.6e-11  Score=131.56  Aligned_cols=189  Identities=14%  Similarity=0.125  Sum_probs=112.8

Q ss_pred             CcccccccceeEEEEEee----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          297 DVEPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       297 d~~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +...||.|++|.||+|+.    +++.||||+....-..                                          
T Consensus         5 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~------------------------------------------   42 (317)
T cd07868           5 EGCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGIS------------------------------------------   42 (317)
T ss_pred             cccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCc------------------------------------------
Confidence            346799999999999996    3578999976321000                                          


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhh--------cCCCHHHHHHHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDE--------LGVDRKRLGRYAV  443 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~--------~g~d~~~la~~lv  443 (766)
                        .+..+|++.+.++    .+..-+.+..++... ....+++|||+++ .+.++.....        ..++...+...+.
T Consensus        43 --~~~~~E~~~l~~l----~h~niv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~  115 (317)
T cd07868          43 --MSACREIALLREL----KHPNVISLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLY  115 (317)
T ss_pred             --HHHHHHHHHHHhc----CCCCCcceeeeEecCCCcEEEEEEeccCC-CHHHHHHhcccccccCCcccCCHHHHHHHHH
Confidence              0122344444443    222223333333322 2345899999976 5555432111        1122222222222


Q ss_pred             --HHHHHHHHhCCccccCCCCCcEEEee--cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CC
Q 004234          444 --ESYLEQILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GV  518 (766)
Q Consensus       444 --~~~l~qI~~~GffHaDpHPGNILV~~--~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~  518 (766)
                        -..+..+|..|++|+|+||.||++..  ..++.++|+|||++..++..... ...  ..-..++..++++++... ..
T Consensus       116 qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~-~~~--~~~~~~t~~y~aPE~~~~~~~  192 (317)
T cd07868         116 QILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKP-LAD--LDPVVVTFWYRAPELLLGARH  192 (317)
T ss_pred             HHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCcc-ccc--cCCccccccccCCHHHcCCCC
Confidence              23467889999999999999999952  13578999999999877543211 000  001123556788887654 33


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 004234          519 LVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       519 ~~~~~D~~~l~~~i~~~l~  537 (766)
                      .+...|++++...+.+++.
T Consensus       193 ~~~~~DiwslG~il~el~~  211 (317)
T cd07868         193 YTKAIDIWAIGCIFAELLT  211 (317)
T ss_pred             cCchhhHHHHHHHHHHHHh
Confidence            5667899999987766653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.31  E-value=1.7e-12  Score=139.76  Aligned_cols=181  Identities=22%  Similarity=0.270  Sum_probs=105.9

Q ss_pred             CcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          297 DVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       297 d~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      +.+.+|+||||.||+|.+  ++++||||-.-|+-+-. .                                       +|
T Consensus        28 ~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~k-n---------------------------------------rE   67 (364)
T KOG0658|consen   28 AVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYK-N---------------------------------------RE   67 (364)
T ss_pred             eeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcC-c---------------------------------------HH
Confidence            346899999999999999  58999999664432211 1                                       12


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCC----eEEEEeecCCCChhhhhhh-h--hcCCC---HHHHHHHHH
Q 004234          375 IDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTP----QILTMEYVPGIKINRIQSL-D--ELGVD---RKRLGRYAV  443 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~----~vLVMEyieG~~L~d~~~l-~--~~g~d---~~~la~~lv  443 (766)
                      +.+++          .. ++++| ..-..|...++.    .-||||||+- +|.+.... .  ....+   -+-....++
T Consensus        68 l~im~----------~l-~HpNIV~L~~~f~~~~~~d~~~lnlVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlf  135 (364)
T KOG0658|consen   68 LQIMR----------KL-DHPNIVRLLYFFSSSTESDEVYLNLVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLF  135 (364)
T ss_pred             HHHHH----------hc-CCcCeeeEEEEEEecCCCchhHHHHHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHH
Confidence            22222          11 23332 222222222222    2589999974 45554331 0  11222   222222222


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004234          444 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG  523 (766)
Q Consensus       444 ~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~  523 (766)
                       ..+..+|.+|+.|||+||.||||++ ..|.++|+|||.++.+.+....  ...++.-.-+-|+    .+...--.+...
T Consensus       136 -rgl~yLh~~~IcHRDIKPqNlLvD~-~tg~LKicDFGSAK~L~~~epn--iSYicSRyYRaPE----Lifga~~Yt~~I  207 (364)
T KOG0658|consen  136 -RGLAYLHSHGICHRDIKPQNLLVDP-DTGVLKICDFGSAKVLVKGEPN--ISYICSRYYRAPE----LIFGATEYTTSI  207 (364)
T ss_pred             -HHHHHHHhcCcccCCCChheEEEcC-CCCeEEeccCCcceeeccCCCc--eeEEEeccccCHH----HHcCccccCcee
Confidence             2367788999999999999999996 5699999999999999776543  1111111122222    223333345667


Q ss_pred             CHHHHHHHHHHHHH
Q 004234          524 DTTAVRRTAQFFLN  537 (766)
Q Consensus       524 D~~~l~~~i~~~l~  537 (766)
                      |+++..-.+.+++.
T Consensus       208 DiWSaGCV~aELl~  221 (364)
T KOG0658|consen  208 DIWSAGCVMAELLK  221 (364)
T ss_pred             EEhhhhHHHHHHhc
Confidence            88888777666553

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.31  E-value=1e-11  Score=130.46  Aligned_cols=182  Identities=14%  Similarity=0.182  Sum_probs=114.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|.|++|+||+|+.  +|+.||+|+....-..                                           .-+
T Consensus        22 ~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~-------------------------------------------~~~   58 (282)
T cd06636          22 EVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDE-------------------------------------------EEE   58 (282)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEEecChHH-------------------------------------------HHH
Confidence            5799999999999999  5899999987321000                                           011


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec--------cCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH--HHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWE--------YTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VES  445 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e--------~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~l--v~~  445 (766)
                      +..|...+.++.    +++++  .+.+..        .....+++|||++|++|.++..... ...+...+...+  +..
T Consensus        59 ~~~e~~~l~~~~----~h~~i--~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~  132 (282)
T cd06636          59 IKLEINMLKKYS----HHRNI--ATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILR  132 (282)
T ss_pred             HHHHHHHHHHhc----CCCcE--EEEeeehhcccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence            223333333332    22222  222211        1345689999999999998654322 223333333222  233


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCC
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLV  520 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-----G~~~  520 (766)
                      .+..+|..|++|+|++|.||++++  ++.++|+|||++..+.......      ....++..+++++.+..     ...+
T Consensus       133 al~~LH~~~ivH~dl~~~nili~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~l~~~~~~~~~~~  204 (282)
T cd06636         133 GLAHLHAHKVIHRDIKGQNVLLTE--NAEVKLVDFGVSAQLDRTVGRR------NTFIGTPYWMAPEVIACDENPDATYD  204 (282)
T ss_pred             HHHHHHHCCcccCCCCHHHEEECC--CCCEEEeeCcchhhhhccccCC------CcccccccccCHhhcCcccCcCcCCC
Confidence            467889999999999999999986  8899999999988664322110      11234566777877642     2234


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~l~  537 (766)
                      ...|++++...+.+++.
T Consensus       205 ~~~DvwslG~~l~el~~  221 (282)
T cd06636         205 YRSDIWSLGITAIEMAE  221 (282)
T ss_pred             cccchhHHHHHHHHHHh
Confidence            56899999887766653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.31  E-value=1.6e-11  Score=127.20  Aligned_cols=183  Identities=12%  Similarity=0.059  Sum_probs=117.4

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||.|++|.||+|.. +++.|++|+.+......                                          .-++
T Consensus        12 ~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~------------------------------------------~~~~   49 (261)
T cd05148          12 RKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLK------------------------------------------QQDF   49 (261)
T ss_pred             hhhccCCCccEEEeEecCCCcEEEEeccccchhh------------------------------------------HHHH
Confidence            5689999999999999 68999999863221100                                          0023


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      ..|...+..+.     ++++.-..-+.......+++|||++|++|.+...... ...+...+...+.+  ..+..+|..|
T Consensus        50 ~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~  124 (261)
T cd05148          50 QKEVQALKRLR-----HKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQN  124 (261)
T ss_pred             HHHHHHHhcCC-----CcchhheeeeEecCCCeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33333333331     1222111112233456799999999999998754221 22344444333322  2367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||+++.  ++.+++.|||.+..+.......      .-......++.++....+..+...|++++...+.+
T Consensus       125 i~h~dl~~~nilv~~--~~~~kl~d~g~~~~~~~~~~~~------~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~  196 (261)
T cd05148         125 SIHRDLAARNILVGE--DLVCKVADFGLARLIKEDVYLS------SDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYE  196 (261)
T ss_pred             eeccccCcceEEEcC--CceEEEccccchhhcCCccccc------cCCCCceEecCHHHHccCCCCchhhHHHHHHHHHH
Confidence            999999999999986  8899999999998775432110      01122345667777777777778899999877666


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       197 l~  198 (261)
T cd05148         197 MF  198 (261)
T ss_pred             HH
Confidence            54

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.31  E-value=2.1e-11  Score=130.94  Aligned_cols=185  Identities=16%  Similarity=0.127  Sum_probs=117.2

Q ss_pred             ccccccceeEEEEEee---------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL---------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l---------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      +.||.|++|.||+|+.         ++..||+|+.+......                                      
T Consensus        18 ~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~--------------------------------------   59 (314)
T cd05099          18 KPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDK--------------------------------------   59 (314)
T ss_pred             eeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChH--------------------------------------
Confidence            6899999999999975         24579999875432111                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhh---------------cC
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE---------------LG  432 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~---------------~g  432 (766)
                         ..-++..|.+-+..+    .++++|  .+.+.  ......+++|||++|++|.++.....               ..
T Consensus        60 ---~~~~~~~E~~~l~~l----~~h~~i--v~~~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~  130 (314)
T cd05099          60 ---DLADLISEMELMKLI----GKHKNI--INLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQ  130 (314)
T ss_pred             ---HHHHHHHHHHHHHhc----cCCCCe--eeEEEEEccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccc
Confidence               001233343333222    223332  22322  23456799999999999998753211               11


Q ss_pred             CCHHHHHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHH
Q 004234          433 VDRKRLGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVL  510 (766)
Q Consensus       433 ~d~~~la~~lv--~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~  510 (766)
                      ++...+...+.  ...+..+|..|++|+|++|+||++++  ++.++|+|||.+..+........  .  ........+++
T Consensus       131 l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~~~--~--~~~~~~~~y~a  204 (314)
T cd05099         131 LSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTE--DNVMKIADFGLARGVHDIDYYKK--T--SNGRLPVKWMA  204 (314)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEEEcC--CCcEEEccccccccccccccccc--c--ccCCCCccccC
Confidence            33333333222  23467889999999999999999986  88999999999987754321110  0  01122345788


Q ss_pred             HHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          511 QAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       511 ~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ++....+..+...|++++...+.+++
T Consensus       205 PE~~~~~~~~~~~DiwslG~~l~el~  230 (314)
T cd05099         205 PEALFDRVYTHQSDVWSFGILMWEIF  230 (314)
T ss_pred             HHHHccCCcCccchhhHHHHHHHHHH
Confidence            88887777778899999987766554

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.31  E-value=2.6e-11  Score=132.74  Aligned_cols=189  Identities=18%  Similarity=0.229  Sum_probs=117.0

Q ss_pred             hhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004234          292 VFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (766)
Q Consensus       292 iF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (766)
                      +...|.. +.||.|++|.||+|+.  +|+.||||+..-.....                              .      
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~------------------------------~------   57 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNV------------------------------T------   57 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccCh------------------------------h------
Confidence            3344443 7899999999999998  69999999762111000                              0      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee-----ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH
Q 004234          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV  443 (766)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~-----e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv  443 (766)
                          ....+.+|...+.++.    +..-+.+..++.     +.....++||||++| .+.+....   .++...+...+.
T Consensus        58 ----~~~~~~~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~---~l~~~~~~~~~~  125 (353)
T cd07850          58 ----HAKRAYRELVLMKLVN----HKNIIGLLNVFTPQKSLEEFQDVYLVMELMDA-NLCQVIQM---DLDHERMSYLLY  125 (353)
T ss_pred             ----HHHHHHHHHHHHHhcC----CCCCcceeeeeccCCCccccCcEEEEEeccCC-CHHHHHhh---cCCHHHHHHHHH
Confidence                0011223444444332    211122222221     111246999999987 45553321   144444333322


Q ss_pred             --HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004234          444 --ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP  521 (766)
Q Consensus       444 --~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~  521 (766)
                        -..+..+|..|++|+|++|+||+++.  ++.++|+|||++..+......       ....+...++++++........
T Consensus       126 ql~~aL~~LH~~gi~H~dlkp~Nil~~~--~~~~kL~Dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~  196 (353)
T cd07850         126 QMLCGIKHLHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMM-------TPYVVTRYYRAPEVILGMGYKE  196 (353)
T ss_pred             HHHHHHHHHHhCCeeeCCCCHHHEEECC--CCCEEEccCccceeCCCCCCC-------CCCcccccccCHHHHhCCCCCC
Confidence              23478899999999999999999986  889999999999877553221       0112345567788777666778


Q ss_pred             CCCHHHHHHHHHHHHH
Q 004234          522 TGDTTAVRRTAQFFLN  537 (766)
Q Consensus       522 ~~D~~~l~~~i~~~l~  537 (766)
                      ..|++++...+.+++.
T Consensus       197 ~~DvwslG~~l~~l~~  212 (353)
T cd07850         197 NVDIWSVGCIMGEMIR  212 (353)
T ss_pred             chhhHhHHHHHHHHHH
Confidence            8899999987776653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.31  E-value=2.6e-11  Score=129.66  Aligned_cols=182  Identities=20%  Similarity=0.195  Sum_probs=114.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|+|++|.||+|+.  +|+.||+|+........                                 .+      ..-+
T Consensus        21 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~---------------------------------~~------~~~~   61 (307)
T cd06607          21 REIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQS---------------------------------NE------KWQD   61 (307)
T ss_pred             eeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCc---------------------------------HH------HHHH
Confidence            4699999999999998  58999999873221100                                 00      0113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +.+|...+..+    .+..-+.+..++ ......++||||++|. +.+.........+...+...+  +-..+..+|..|
T Consensus        62 ~~~Ei~~l~~l----~h~niv~~~~~~-~~~~~~~lv~e~~~g~-l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~  135 (307)
T cd06607          62 IIKEVRFLQQL----RHPNTIEYKGCY-LREHTAWLVMEYCLGS-ASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHE  135 (307)
T ss_pred             HHHHHHHHHhC----CCCCEEEEEEEE-EeCCeEEEEHHhhCCC-HHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34444433333    222222333333 2345679999999874 444332222234444443332  223467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCCHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRRT  531 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~---lG~~~~~~D~~~l~~~  531 (766)
                      ++|+|++|+||++++  ++.+++.|||++...++...          ..+.+.++++++..   .+..+...|++++...
T Consensus       136 i~H~dl~p~nIl~~~--~~~~kL~dfg~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~i  203 (307)
T cd06607         136 RIHRDIKAGNILLTE--PGTVKLADFGSASLVSPANS----------FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT  203 (307)
T ss_pred             ceecCCCcccEEECC--CCCEEEeecCcceecCCCCC----------ccCCccccCceeeeccCCCCCCcccchHHHHHH
Confidence            999999999999986  88999999999987654321          12445566776552   3455677899999877


Q ss_pred             HHHHHH
Q 004234          532 AQFFLN  537 (766)
Q Consensus       532 i~~~l~  537 (766)
                      +.+++.
T Consensus       204 l~el~t  209 (307)
T cd06607         204 CIELAE  209 (307)
T ss_pred             HHHHHc
Confidence            766543

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.31  E-value=4.7e-11  Score=128.51  Aligned_cols=193  Identities=18%  Similarity=0.191  Sum_probs=120.4

Q ss_pred             hCCChhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHH
Q 004234          285 LGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (766)
Q Consensus       285 lG~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~  362 (766)
                      ++..++++|..+.  .+|.|++|.||+|+.  +|+.|++|+........                             . 
T Consensus        15 ~~~~~~~~~~~~~--~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~-----------------------------~-   62 (313)
T cd06633          15 YKDDPEEIFVGLH--EIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQT-----------------------------N-   62 (313)
T ss_pred             ccCCHHHHhhcce--eeccCCCeEEEEEEECCCCcEEEEEEEeccccCc-----------------------------h-
Confidence            3466777766554  499999999999998  58999999873321100                             0 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH
Q 004234          363 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA  442 (766)
Q Consensus       363 i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l  442 (766)
                        +       ...++..|...+..+.    +..-+.+..++ ......+++|||+.| .+.+........++...+...+
T Consensus        63 --~-------~~~~~~~E~~~l~~l~----h~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~~~~~~l~~~~~~~~~  127 (313)
T cd06633          63 --E-------KWQDIIKEVKFLQQLK----HPNTIEYKGCY-LKEHTAWLVMEYCLG-SASDLLEVHKKPLQEVEIAAIT  127 (313)
T ss_pred             --H-------HHHHHHHHHHHHHhCC----CCCCccEEEEE-EeCCEEEEEEecCCC-CHHHHHHhcCCCCCHHHHHHHH
Confidence              0       0112344444444432    22222333333 224567999999987 4544432222334444444333


Q ss_pred             --HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cC
Q 004234          443 --VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MG  517 (766)
Q Consensus       443 --v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~---lG  517 (766)
                        +-..+..+|..|++|+|++|+||+++.  ++.++++|||++....+...          ..++..++++++..   -+
T Consensus       128 ~qi~~al~~LH~~gi~H~dl~p~nili~~--~~~~kL~dfg~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~  195 (313)
T cd06633         128 HGALQGLAYLHSHNMIHRDIKAGNILLTE--PGQVKLADFGSASKSSPANS----------FVGTPYWMAPEVILAMDEG  195 (313)
T ss_pred             HHHHHHHHHHHHCCeecCCCChhhEEECC--CCCEEEeecCCCcccCCCCC----------ccccccccChhhccccCCC
Confidence              223467889999999999999999985  78999999998865433211          12445577777763   24


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q 004234          518 VLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       518 ~~~~~~D~~~l~~~i~~~l  536 (766)
                      ......|++++...+.+++
T Consensus       196 ~~~~~sDv~slGvil~el~  214 (313)
T cd06633         196 QYDGKVDVWSLGITCIELA  214 (313)
T ss_pred             CCCchhhHHHHHHHHHHHH
Confidence            4566789999987766554

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.31  E-value=3.3e-11  Score=126.64  Aligned_cols=118  Identities=16%  Similarity=0.191  Sum_probs=88.1

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhCCccccCCCCCcEEEeecCCC-cEEEEeecce
Q 004234          407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSHGFFHADPHPGNIAVDDVNGG-RLIFYDFGMM  483 (766)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~--~l~qI~~~GffHaDpHPGNILV~~~~~g-~l~LiDFGlv  483 (766)
                      ....++||||++|++|.++..... .++...+...+.+.  .+..+|..|++|+|++|.||+++.  ++ +++++|||++
T Consensus        81 ~~~~~iv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~--~~~~~~l~dfg~~  157 (267)
T PHA03390         81 LKGHVLIMDYIKDGDLFDLLKKEG-KLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDR--AKDRIYLCDYGLC  157 (267)
T ss_pred             CCeeEEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeC--CCCeEEEecCccc
Confidence            456799999999999988754322 44555544444332  368899999999999999999986  55 8999999999


Q ss_pred             eccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          484 GSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       484 ~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      ..++....          ..+...+++++....+..++..|++++...+.+++.
T Consensus       158 ~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~  201 (267)
T PHA03390        158 KIIGTPSC----------YDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLT  201 (267)
T ss_pred             eecCCCcc----------CCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHH
Confidence            87764321          235667788888877777778899999877766553

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=99.31  E-value=3.1e-11  Score=124.37  Aligned_cols=99  Identities=28%  Similarity=0.557  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHH-hcCC--CCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCC
Q 004234          378 TQEAANAELFAS-NFKD--MDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~-~f~~--~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~G  454 (766)
                      .++..|+.+.+. -|..  ++.+..-+-.+.+++..+|+||||+|.++++...+.      ..++..+. ..++++|.+|
T Consensus        83 ~~l~~~~~~i~~~g~~~~~~~yl~~ekk~~~~~~~~~ll~EYIeG~~l~d~~~i~------e~~~~ki~-~~ikqlH~~G  155 (229)
T PF06176_consen   83 SRLINNTDKIRNEGFTEPADPYLAAEKKIFRYTSSYVLLMEYIEGVELNDIEDID------EDLAEKIV-EAIKQLHKHG  155 (229)
T ss_pred             HHHHHHHHHHHHcCccccccceeeeeeeeccceeEEEEEEEEecCeecccchhcC------HHHHHHHH-HHHHHHHHcC
Confidence            344445555543 2222  223444455567888899999999999999875432      13444444 4689999999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceecc
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  486 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L  486 (766)
                      ++|+||||||++++   ++.++++||+..+..
T Consensus       156 ~~HGD~hpgNFlv~---~~~i~iID~~~k~~~  184 (229)
T PF06176_consen  156 FYHGDPHPGNFLVS---NNGIRIIDTQGKRMS  184 (229)
T ss_pred             CccCCCCcCcEEEE---CCcEEEEECcccccc
Confidence            99999999999997   566999999988864

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.31  E-value=1.7e-11  Score=128.83  Aligned_cols=181  Identities=14%  Similarity=0.120  Sum_probs=112.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|..  +|+.||+|+..+....                                           .-+
T Consensus        24 ~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~-------------------------------------------~~~   60 (286)
T cd06638          24 ETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDI-------------------------------------------DEE   60 (286)
T ss_pred             eeeccCCCcEEEEEEECCCCceeEEEeeccccch-------------------------------------------HHH
Confidence            6899999999999998  5899999986431100                                           001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec-------cCCCeEEEEeecCCCChhhhhhh--h-hcCCCHHHHHHHH--HH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWE-------YTTPQILTMEYVPGIKINRIQSL--D-ELGVDRKRLGRYA--VE  444 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-------~st~~vLVMEyieG~~L~d~~~l--~-~~g~d~~~la~~l--v~  444 (766)
                      +.+|...+.++.    ++++  +++++..       -....+++|||++|++|.++...  . ....+...+...+  +-
T Consensus        61 ~~~e~~~l~~l~----~h~~--i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~  134 (286)
T cd06638          61 IEAEYNILKALS----DHPN--VVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEAL  134 (286)
T ss_pred             HHHHHHHHHHHh----cCCC--eeeeeeeeeecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHH
Confidence            223333333332    1222  2333221       12346999999999999886431  1 1123333222222  22


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCC
Q 004234          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVL  519 (766)
Q Consensus       445 ~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-----G~~  519 (766)
                      ..+..+|..|++|+|++|+||++++  ++.++++|||++..+.......      ....++..+++++....     +..
T Consensus       135 ~~l~~lH~~~i~H~dlkp~nili~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~  206 (286)
T cd06638         135 MGLQHLHVNKTIHRDVKGNNILLTT--EGGVKLVDFGVSAQLTSTRLRR------NTSVGTPFWMAPEVIACEQQLDSTY  206 (286)
T ss_pred             HHHHHHHhCCccccCCCHHhEEECC--CCCEEEccCCceeecccCCCcc------ccccCCCcccChhhhchhhhccccc
Confidence            3467889999999999999999986  7889999999988775432110      11124556677776542     234


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 004234          520 VPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       520 ~~~~D~~~l~~~i~~~l  536 (766)
                      +...|++++...+.+++
T Consensus       207 ~~~~Dv~slGvi~~el~  223 (286)
T cd06638         207 DARCDVWSLGITAIELG  223 (286)
T ss_pred             cchhhhhhHHHHHHHHh
Confidence            56789998887665543

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.30  E-value=2e-11  Score=129.23  Aligned_cols=185  Identities=14%  Similarity=0.103  Sum_probs=114.4

Q ss_pred             ccccccceeEEEEEeec-------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||.|++|.||+|+..       +..|++|+...+....                                        
T Consensus         6 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~----------------------------------------   45 (290)
T cd05045           6 KTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSS----------------------------------------   45 (290)
T ss_pred             ccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHH----------------------------------------
Confidence            57899999999999872       2578999774332110                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhh--------------------
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE--------------------  430 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~--------------------  430 (766)
                       ..-++.+|..-+..+    . ++++ .+...+ ...+..+++|||++|++|.++.....                    
T Consensus        46 -~~~~~~~E~~~l~~l----~-h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~  118 (290)
T cd05045          46 -ELRDLLSEFNLLKQV----N-HPHVIKLYGAC-SQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDN  118 (290)
T ss_pred             -HHHHHHHHHHHHhhC----C-CCCEeeEEEEE-ecCCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccC
Confidence             011344454444433    2 2332 222222 34566899999999999988643210                    


Q ss_pred             ---cCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcC
Q 004234          431 ---LGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKD  505 (766)
Q Consensus       431 ---~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D  505 (766)
                         ..++...+...+.+  ..+..+|..|++|+|++|.||++++  ++.++|+|||++..+......  ...  ......
T Consensus       119 ~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~nill~~--~~~~kl~dfg~~~~~~~~~~~--~~~--~~~~~~  192 (290)
T cd05045         119 PDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAE--GRKMKISDFGLSRDVYEEDSY--VKR--SKGRIP  192 (290)
T ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheEEEcC--CCcEEeccccccccccCccch--hcc--cCCCCC
Confidence               01222333333222  3368889999999999999999986  789999999998876433211  000  011123


Q ss_pred             HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          506 ADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       506 ~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ..+++++...-...+...|++++...+.+++
T Consensus       193 ~~y~apE~~~~~~~~~~~Di~slG~~l~el~  223 (290)
T cd05045         193 VKWMAIESLFDHIYTTQSDVWSFGVLLWEIV  223 (290)
T ss_pred             ccccCHHHHccCCcchHhHHHHHHHHHHHHH
Confidence            4566677665556677789999887766554

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.30  E-value=5.7e-11  Score=127.44  Aligned_cols=193  Identities=18%  Similarity=0.201  Sum_probs=122.2

Q ss_pred             hCCChhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHH
Q 004234          285 LGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (766)
Q Consensus       285 lG~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~  362 (766)
                      +...++..|...  ..+|.|++|+||+|+.  +|+.|+||..+..-...                               
T Consensus         9 ~~~~~~~~~~~~--~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~-------------------------------   55 (308)
T cd06634           9 FKDDPEKLFSDL--REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS-------------------------------   55 (308)
T ss_pred             hcCCcHHHHHHH--HheeeCCCEEEEEEEEcCCCcEEEEEEEecccccC-------------------------------
Confidence            344455555533  5699999999999998  58999999764311000                               


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH
Q 004234          363 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA  442 (766)
Q Consensus       363 i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l  442 (766)
                        .+      ..-++..|.+.+..+.    +...+.+...+ ......++||||+.| ++.+........++...+...+
T Consensus        56 --~~------~~~~~~~e~~~l~~l~----h~~i~~~~~~~-~~~~~~~lv~e~~~~-~l~~~~~~~~~~l~~~~~~~~~  121 (308)
T cd06634          56 --NE------KWQDIIKEVRFLQKLR----HPNTIQYRGCY-LREHTAWLVMEYCLG-SASDLLEVHKKPLQEVEIAAVT  121 (308)
T ss_pred             --hH------HHHHHHHHHHHHHhCC----CCCcccEEEEE-EcCCeeEEEEEccCC-CHHHHHHHcCCCCCHHHHHHHH
Confidence              00      0113344554444432    22222222222 234667999999986 5665443333334555544433


Q ss_pred             HH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cC
Q 004234          443 VE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MG  517 (766)
Q Consensus       443 v~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~---lG  517 (766)
                      .+  ..+..+|..|++|+|++|.||+++.  ++.+++.|||++..+.+...          ..++..+++++...   .+
T Consensus       122 ~~l~~~l~~LH~~~i~H~dl~p~nil~~~--~~~~kl~dfg~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~  189 (308)
T cd06634         122 HGALQGLAYLHSHNMIHRDVKAGNILLSE--PGLVKLGDFGSASIMAPANX----------FVGTPYWMAPEVILAMDEG  189 (308)
T ss_pred             HHHHHHHHHHHhCCcccCCCCHHhEEECC--CCcEEECCcccceeecCccc----------ccCCccccCHHHHhhcccC
Confidence            32  3467889999999999999999985  88999999999887765321          12455677777753   24


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q 004234          518 VLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       518 ~~~~~~D~~~l~~~i~~~l  536 (766)
                      ..+...|++++...+.+++
T Consensus       190 ~~~~~~Di~slG~il~el~  208 (308)
T cd06634         190 QYDGKVDVWSLGITCIELA  208 (308)
T ss_pred             CCCcccchHHHHHHHHHHH
Confidence            4566789999987766554

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.30  E-value=3.2e-11  Score=127.52  Aligned_cols=183  Identities=15%  Similarity=0.135  Sum_probs=114.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|+|++|.||+|..  +|+.||+|+..+.-.                              .       ..      +
T Consensus        28 ~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~------------------------------~-------~~------~   64 (291)
T cd06639          28 ETIGKGTYGKVYKVTNKKDGSLAAVKILDPISD------------------------------V-------DE------E   64 (291)
T ss_pred             EEeecCCCeEEEEEEECCCCCEEEEEEeccccc------------------------------H-------HH------H
Confidence            5799999999999998  589999998743200                              0       00      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeec----cCCCeEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHHH--HHH
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWE----YTTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYAV--ESY  446 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e----~st~~vLVMEyieG~~L~d~~~l---~~~g~d~~~la~~lv--~~~  446 (766)
                      +..|...+.++.    +++++ .+...+..    .....++||||++|++|.++...   .........+...+.  -..
T Consensus        65 ~~~e~~~l~~l~----~h~ni~~~~~~~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~a  140 (291)
T cd06639          65 IEAEYNILQSLP----NHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLG  140 (291)
T ss_pred             HHHHHHHHHHhc----CCCCeEEEEEEEEeccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Confidence            223333333332    22222 22222221    12357999999999999886531   112233333333322  234


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-----CCC
Q 004234          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-----LVP  521 (766)
Q Consensus       447 l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~-----~~~  521 (766)
                      +..+|..|++|+|++|+||+++.  ++.++++|||.+..+.......      ....+...+++++....+.     .+.
T Consensus       141 l~~lH~~~ivH~dlkp~nili~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~~  212 (291)
T cd06639         141 LQHLHNNRIIHRDVKGNNILLTT--EGGVKLVDFGVSAQLTSTRLRR------NTSVGTPFWMAPEVIACEQQYDYSYDA  212 (291)
T ss_pred             HHHHHhCCeeccCCCHHHEEEcC--CCCEEEeecccchhcccccccc------cCccCCccccChhhhcCCCCcccccCC
Confidence            67889999999999999999986  8899999999988765432111      1122455667777765432     356


Q ss_pred             CCCHHHHHHHHHHHH
Q 004234          522 TGDTTAVRRTAQFFL  536 (766)
Q Consensus       522 ~~D~~~l~~~i~~~l  536 (766)
                      ..|++++...+.+++
T Consensus       213 ~~Di~slGvi~~el~  227 (291)
T cd06639         213 RCDVWSLGITAIELG  227 (291)
T ss_pred             ccchHHHHHHHHHHh
Confidence            789999987766554

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.30  E-value=7.6e-12  Score=131.46  Aligned_cols=184  Identities=16%  Similarity=0.154  Sum_probs=112.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|.|++|.||+|+.  +|+.||+|+.+......                                  +.      +-+
T Consensus         6 ~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~----------------------------------~~------~~~   45 (284)
T cd07839           6 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDE----------------------------------GV------PSS   45 (284)
T ss_pred             EEecccCCeEEEEEEECCCCcEEEEEEeecccccc----------------------------------cC------ccc
Confidence            5699999999999999  59999999874321110                                  00      001


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|...+.++.    + +++ .+...+ ...+..+++|||++| ++.+.........+...+...+.+  ..+..+|..
T Consensus        46 ~~~ei~~l~~l~----h-~~i~~~~~~~-~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~  118 (284)
T cd07839          46 ALREICLLKELK----H-KNIVRLYDVL-HSDKKLTLVFEYCDQ-DLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSH  118 (284)
T ss_pred             hhHHHHHHHhcC----C-CCeeeHHHHh-ccCCceEEEEecCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            222333333321    1 211 111111 224567999999987 555543222223454444443333  337788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~~i  532 (766)
                      |++|+|+||+||+++.  ++.++|+|||++..+....+..      ....++..++++++...+ ..++..|++++...+
T Consensus       119 ~i~H~dl~~~nil~~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il  190 (284)
T cd07839         119 NVLHRDLKPQNLLINK--NGELKLADFGLARAFGIPVRCY------SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIF  190 (284)
T ss_pred             CEecCCCCHHHEEEcC--CCcEEECccchhhccCCCCCCc------CCCccccCCcChHHHhCCcccCcHHHHHHHHHHH
Confidence            9999999999999986  8899999999988664432110      011234456677766433 346678999998777


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       191 ~~l~t  195 (284)
T cd07839         191 AELAN  195 (284)
T ss_pred             HHHHh
Confidence            76653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.30  E-value=2.5e-11  Score=126.41  Aligned_cols=188  Identities=15%  Similarity=0.079  Sum_probs=117.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||.|..  +|+.|+||+.+......                           +..   .       .--.
T Consensus         8 ~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~---------------------------~~~---~-------~~~~   50 (265)
T cd06652           8 KLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESP---------------------------ETS---K-------EVNA   50 (265)
T ss_pred             eEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCc---------------------------ccH---H-------HHHH
Confidence            5799999999999998  58999999864321110                           000   0       0013


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc----CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~----st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI  450 (766)
                      +.+|++.+.++.     ++++  ++.+..+    ....+++|||++|++|.+..... ...+.......+  +...+..+
T Consensus        51 ~~~E~~~l~~l~-----h~~i--~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~l~~~l~~l  122 (265)
T cd06652          51 LECEIQLLKNLL-----HERI--VQYYGCLRDPMERTLSIFMEHMPGGSIKDQLKSY-GALTENVTRKYTRQILEGVSYL  122 (265)
T ss_pred             HHHHHHHHHhcC-----CCCe--eeEEeEeccCCCceEEEEEEecCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHH
Confidence            445666555542     2222  2222211    23457999999999998864321 123333322222  22346788


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|++|.||+++.  ++.++|+|||+...+....... ..  .....+...+++++.......++..|++++..
T Consensus       123 H~~~i~H~dl~p~nil~~~--~~~~~l~Dfg~~~~~~~~~~~~-~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~  197 (265)
T cd06652         123 HSNMIVHRDIKGANILRDS--VGNVKLGDFGASKRLQTICLSG-TG--MKSVTGTPYWMSPEVISGEGYGRKADIWSVGC  197 (265)
T ss_pred             HhCCEecCCCCHHHEEecC--CCCEEECcCccccccccccccc-cc--cccCCCCccccChhhhcCCCCCcchhHHHHHH
Confidence            9999999999999999985  8899999999988664321100 00  00112445677787776666677889999987


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       198 il~el~  203 (265)
T cd06652         198 TVVEML  203 (265)
T ss_pred             HHHHHh
Confidence            776655

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.30  E-value=1.8e-11  Score=129.76  Aligned_cols=188  Identities=16%  Similarity=0.135  Sum_probs=116.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|..  +|+.|+||..+......-                               .++.      +-.
T Consensus         6 ~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~-------------------------------~~~~------~~~   48 (298)
T cd07841           6 KKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEA-------------------------------KDGI------NFT   48 (298)
T ss_pred             eeeeeccccEEEEEEECCCCcEEEEEEEeccccccc-------------------------------cchh------hHH
Confidence            4699999999999998  589999998854332110                               0001      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +..|...+.++.    +..-+.+...+. .....++||||+ +++|.++.......++...+...+.+  ..+..+|..|
T Consensus        49 ~~~e~~~l~~~~----h~~i~~~~~~~~-~~~~~~lv~e~~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~  122 (298)
T cd07841          49 ALREIKLLQELK----HPNIIGLLDVFG-HKSNINLVFEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNW  122 (298)
T ss_pred             HHHHHHHHhhcC----CCCChhhhheee-cCCEEEEEEccc-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            233444444332    222223333332 245679999999 88888865432223454444433322  3467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|++|+||+++.  ++.++|+|||++..+.......      .....+..++++++... ...+...|++++...+.
T Consensus       123 i~H~dl~p~nill~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~  194 (298)
T cd07841         123 ILHRDLKPNNLLIAS--DGVLKLADFGLARSFGSPNRKM------THQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFA  194 (298)
T ss_pred             eeecCCChhhEEEcC--CCCEEEccceeeeeccCCCccc------cccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            999999999999986  8999999999998775432111      00112344566666533 34456689999987776


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       195 e~~~  198 (298)
T cd07841         195 ELLL  198 (298)
T ss_pred             HHHc
Confidence            6654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.30  E-value=1.3e-11  Score=130.59  Aligned_cols=185  Identities=15%  Similarity=0.051  Sum_probs=109.9

Q ss_pred             cccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      .+.||+|++|.||+|..  +|+.|+||+.+....+.                                         .+.
T Consensus        10 ~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~-----------------------------------------~~~   48 (291)
T cd07870          10 LEKLGEGSYATVYKGISRINGQLVALKVISMKTEEG-----------------------------------------VPF   48 (291)
T ss_pred             EEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCC-----------------------------------------CcH
Confidence            36799999999999998  58999999874322111                                         011


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~  453 (766)
                      .+.+|+..+..+    . ++++.-..-+.......+++|||++|..++.+. ..........+...+  +-..+..+|..
T Consensus        49 ~~~~e~~~l~~l----~-h~ni~~~~~~~~~~~~~~lv~e~~~~~l~~~~~-~~~~~~~~~~~~~~~~qi~~~L~~lH~~  122 (291)
T cd07870          49 TAIREASLLKGL----K-HANIVLLHDIIHTKETLTFVFEYMHTDLAQYMI-QHPGGLHPYNVRLFMFQLLRGLAYIHGQ  122 (291)
T ss_pred             HHHHHHHHHHhc----C-CCCEeEEEEEEecCCeEEEEEecccCCHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            223444444443    2 233322222223345679999999764333332 112223333332222  22336788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i  532 (766)
                      |++|+|+||.||+++.  ++.++|+|||++...........      ....+..+++++.... ...+...|++++...+
T Consensus       123 ~i~H~dlkp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l  194 (291)
T cd07870         123 HILHRDLKPQNLLISY--LGELKLADFGLARAKSIPSQTYS------SEVVTLWYRPPDVLLGATDYSSALDIWGAGCIF  194 (291)
T ss_pred             CcccCCCChHHEEEcC--CCcEEEeccccccccCCCCCCCC------CccccccccCCceeecCCCCCcHHHHHHHHHHH
Confidence            9999999999999985  88999999999876433221100      0112444556665542 2235567999998777


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       195 ~~l~~  199 (291)
T cd07870         195 IEMLQ  199 (291)
T ss_pred             HHHHh
Confidence            66543

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.30  E-value=1.3e-11  Score=130.78  Aligned_cols=185  Identities=15%  Similarity=0.077  Sum_probs=118.3

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      ..||.|++|.||+|..       ++..|++|.......                                          
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~------------------------------------------   48 (291)
T cd05094          11 RELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTL------------------------------------------   48 (291)
T ss_pred             eeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccH------------------------------------------
Confidence            5799999999999985       245688887632110                                          


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRK  436 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~~  436 (766)
                      ..+-+|.+|+..+.++.     ++++.-..-+.......++||||++|++|.++.....               ..++..
T Consensus        49 ~~~~~~~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  123 (291)
T cd05094          49 AARKDFQREAELLTNLQ-----HEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLS  123 (291)
T ss_pred             HHHHHHHHHHHHHhcCC-----CCCcceEEEEEccCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHH
Confidence            11123455655555442     2333322223344566899999999999998754211               112333


Q ss_pred             HHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004234          437 RLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  514 (766)
Q Consensus       437 ~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~  514 (766)
                      .+...+.+  ..+..+|..|++|+|++|.||+++.  ++.++++|||++..+........    .+...+...+++++..
T Consensus       124 ~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~--~~~~~l~dfg~a~~~~~~~~~~~----~~~~~~~~~y~aPE~~  197 (291)
T cd05094         124 QMLHIASQIASGMVYLASQHFVHRDLATRNCLVGA--NLLVKIGDFGMSRDVYSTDYYRV----GGHTMLPIRWMPPESI  197 (291)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeecccCcceEEEcc--CCcEEECCCCcccccCCCceeec----CCCCCcceeecChHHh
Confidence            33333222  2367889999999999999999986  88999999999876544321111    0111224557778877


Q ss_pred             HcCCCCCCCCHHHHHHHHHHHH
Q 004234          515 QMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       515 ~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      .....++..|++++...+.+++
T Consensus       198 ~~~~~~~~~Di~slG~il~el~  219 (291)
T cd05094         198 MYRKFTTESDVWSFGVILWEIF  219 (291)
T ss_pred             ccCCCCchhhHHHHHHHHHHHH
Confidence            6666777889999987776654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.30  E-value=2.2e-11  Score=125.92  Aligned_cols=189  Identities=20%  Similarity=0.177  Sum_probs=118.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||+|++|.||+|..  +|+.|++|+.+.....                                  .+..      -.
T Consensus         6 ~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------------------------~~~~------~~   45 (264)
T cd06626           6 NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND----------------------------------PKTI------KE   45 (264)
T ss_pred             eEeecCCCcEEEEEEECCCCcEEEEEEEECcccc----------------------------------hHHH------HH
Confidence            6899999999999998  5899999987543221                                  0001      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +..|...+.++.     ++++.-..-+.......+++|||++|.+|.++..... ..+...+...+  +-..+..+|..|
T Consensus        46 ~~~e~~~~~~l~-----~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~~i~~~l~~lh~~~  119 (264)
T cd06626          46 IADEMKVLELLK-----HPNLVKYYGVEVHREKVYIFMEYCSGGTLEELLEHGR-ILDEHVIRVYTLQLLEGLAYLHSHG  119 (264)
T ss_pred             HHHHHHHHHhCC-----CCChhheeeeEecCCEEEEEEecCCCCcHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHCC
Confidence            233333333331     1222111112223456799999999999999754321 12333332222  222367789999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC---CCCCCCHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV---LVPTGDTTAVRRT  531 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~---~~~~~D~~~l~~~  531 (766)
                      ++|+|++|+||++++  ++.++++|||.+..+....... ...+.+ ..+...++.+++...+.   .....|++++...
T Consensus       120 i~H~dl~~~nil~~~--~~~~kl~d~g~~~~~~~~~~~~-~~~~~~-~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~i  195 (264)
T cd06626         120 IVHRDIKPANIFLDH--NGVIKLGDFGCAVKLKNNTTTM-GEEVQS-LAGTPAYMAPEVITGGKGKGHGRAADIWSLGCV  195 (264)
T ss_pred             cccCCCCHHHEEECC--CCCEEEcccccccccCCCCCcc-cccccC-CcCCcCccChhhccCCCCCCCCcccchHHHHHH
Confidence            999999999999986  8899999999998876543211 000111 23455677777776554   5667899999877


Q ss_pred             HHHHHH
Q 004234          532 AQFFLN  537 (766)
Q Consensus       532 i~~~l~  537 (766)
                      +.+++.
T Consensus       196 l~~l~~  201 (264)
T cd06626         196 VLEMAT  201 (264)
T ss_pred             HHHHHh
Confidence            666553

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.30  E-value=1.3e-11  Score=133.78  Aligned_cols=183  Identities=19%  Similarity=0.229  Sum_probs=119.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|+|.+|.|-+|+.  .|+.||||.+|.+--+. +                        .|++              .
T Consensus        59 etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkd-e------------------------qDlv--------------h   99 (668)
T KOG0611|consen   59 ETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKD-E------------------------QDLV--------------H   99 (668)
T ss_pred             HHhcCCcccceeehhhccCCcEeehhhhhhhhccc-H------------------------HHHH--------------H
Confidence            4699999999999998  59999999775432111 0                        1111              1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCH---HHHHHHHHHHHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR---KRLGRYAVESYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~---~~la~~lv~~~l~qI~~~  453 (766)
                      .++|.+.|..+    .+..-|.|-.|+ +-.++.||||||..|+.|.|+..-.+. +..   ..+.+.++ ...+.+|.+
T Consensus       100 IRREIeIMSsL----NHPhII~IyEVF-ENkdKIvivMEYaS~GeLYDYiSer~~-LsErEaRhfFRQIv-SAVhYCHkn  172 (668)
T KOG0611|consen  100 IRREIEIMSSL----NHPHIIQIYEVF-ENKDKIVIVMEYASGGELYDYISERGS-LSEREARHFFRQIV-SAVHYCHKN  172 (668)
T ss_pred             HHHHHHHHhhc----CCCceeehhhhh-cCCceEEEEEEecCCccHHHHHHHhcc-ccHHHHHHHHHHHH-HHHHHHhhc
Confidence            23344434333    122223444444 346788999999999999998643221 111   12222222 335667899


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i  532 (766)
                      +++|+|+|-.|||++.  ++.+++.|||+...+.+.   .+.+.|+    +.+-|+.+++..- -+..|..|-+++...+
T Consensus       173 rVvHRDLKLENILLD~--N~NiKIADFGLSNly~~~---kfLqTFC----GSPLYASPEIvNG~PY~GPEVDsWsLGvLL  243 (668)
T KOG0611|consen  173 RVVHRDLKLENILLDQ--NNNIKIADFGLSNLYADK---KFLQTFC----GSPLYASPEIVNGTPYKGPEVDSWSLGVLL  243 (668)
T ss_pred             cceecccchhheeecC--CCCeeeeccchhhhhccc---cHHHHhc----CCcccCCccccCCCCCCCCccchhhHHHHH
Confidence            9999999999999986  889999999999887553   3455544    4666777766643 2344667888888766


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      +-++
T Consensus       244 YtLV  247 (668)
T KOG0611|consen  244 YTLV  247 (668)
T ss_pred             HHHh
Confidence            5543

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.30  E-value=1.6e-11  Score=139.35  Aligned_cols=120  Identities=17%  Similarity=0.148  Sum_probs=78.3

Q ss_pred             eEEEEeecCCCChhhhhh-h--hhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004234          410 QILTMEYVPGIKINRIQS-L--DELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (766)
Q Consensus       410 ~vLVMEyieG~~L~d~~~-l--~~~g~d~~~la~~l--v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (766)
                      .++||||++|. +.+... .  ....++...+....  +-..+..+|..|++|+|+||.||+++. .++.++|+|||++.
T Consensus       142 l~lvmE~~~~~-l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~-~~~~vkL~DFGla~  219 (440)
T PTZ00036        142 LNVVMEFIPQT-VHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDP-NTHTLKLCDFGSAK  219 (440)
T ss_pred             EEEEEecCCcc-HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcC-CCCceeeeccccch
Confidence            46899999974 444321 1  11223333332222  223478899999999999999999985 34579999999998


Q ss_pred             ccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHHHHHHH
Q 004234          485 SISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLNS  538 (766)
Q Consensus       485 ~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i~~~l~~  538 (766)
                      .+.......       ...+++.++++++..- ...+...|++++...+.+++..
T Consensus       220 ~~~~~~~~~-------~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG  267 (440)
T PTZ00036        220 NLLAGQRSV-------SYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILG  267 (440)
T ss_pred             hccCCCCcc-------cCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhC
Confidence            775432211       0124566788887643 2356678999999887776643

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.30  E-value=3e-11  Score=112.91  Aligned_cols=133  Identities=25%  Similarity=0.345  Sum_probs=94.8

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      ++++.|+++.||++..++..++||+.++...                                            +.++.
T Consensus         4 ~~i~~g~~~~v~~~~~~~~~~~iK~~~~~~~--------------------------------------------~~~~~   39 (155)
T cd05120           4 KLLKGGLTNRVYLLGTKDEDYVLKINPSREK--------------------------------------------GADRE   39 (155)
T ss_pred             eecccccccceEEEEecCCeEEEEecCCCCc--------------------------------------------hhHHH
Confidence            5799999999999999888999998744321                                            12455


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccC--CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHh---C
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS---H  453 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s--t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~---~  453 (766)
                      .|...+..+.+.     ...+|+++....  +..+++|||++|..+....     ......+... +...+..+|.   .
T Consensus        40 ~e~~~~~~l~~~-----~~~~p~~~~~~~~~~~~~~v~e~~~g~~~~~~~-----~~~~~~~~~~-~~~~l~~lh~~~~~  108 (155)
T cd05120          40 REVAILQLLARK-----GLPVPKVLASGESDGWSYLLMEWIEGETLDEVS-----EEEKEDIAEQ-LAELLAKLHQLPLL  108 (155)
T ss_pred             HHHHHHHHHHHc-----CCCCCeEEEEcCCCCccEEEEEecCCeecccCC-----HHHHHHHHHH-HHHHHHHHhCCCce
Confidence            666666666553     356777776443  3689999999998876540     0011222222 3344566665   4


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (766)
                      |++|+|+||+||++++  ++.++++|||.+...++
T Consensus       109 ~i~H~Dl~~~Nil~~~--~~~~~l~Df~~~~~~~~  141 (155)
T cd05120         109 VLCHGDLHPGNILVDD--GKILGIIDWEYAGYGPP  141 (155)
T ss_pred             EEEecCCCcceEEEEC--CcEEEEEecccccCCCh
Confidence            8999999999999985  68999999999987654

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.29  E-value=2.9e-11  Score=124.52  Aligned_cols=184  Identities=15%  Similarity=0.130  Sum_probs=117.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|+|++|.||+|..  +|+.||+|+........                                  +-..      .
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~----------------------------------~~~~------~   45 (265)
T cd08217           6 ETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTE----------------------------------KEKQ------Q   45 (265)
T ss_pred             eeeccCCCeEEEEeeecCCCCEEEEEEEecccCCH----------------------------------HHHH------H
Confidence            5799999999999998  58999999873221100                                  0001      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee----ccCCCeEEEEeecCCCChhhhhhhh---hcCCCHHHHHHHHHH--HHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~----e~st~~vLVMEyieG~~L~d~~~l~---~~g~d~~~la~~lv~--~~l  447 (766)
                      +..|...+..+.    + ++  +++.+.    ......+++|||++|++|.++....   ...++...+...+.+  ..+
T Consensus        46 ~~~e~~~l~~l~----~-~~--i~~~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l  118 (265)
T cd08217          46 LVSEVNILRELK----H-PN--IVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLAL  118 (265)
T ss_pred             HHHHHHHHHhcC----C-Cc--cceeeeeeecCCCCEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHH
Confidence            223333333331    1 22  222222    1123458999999999998865321   122344444333322  336


Q ss_pred             HHHH-----hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004234          448 EQIL-----SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (766)
Q Consensus       448 ~qI~-----~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~  522 (766)
                      ..+|     ..|++|+|+||+||+++.  ++.++++|||++..+......  .    .-..+...+++++....+..+..
T Consensus       119 ~~lH~~~~~~~~i~h~dl~p~nili~~--~~~~kl~d~g~~~~~~~~~~~--~----~~~~~~~~~~~pE~~~~~~~~~~  190 (265)
T cd08217         119 YECHNRSDPGNTVLHRDLKPANIFLDA--NNNVKLGDFGLAKILGHDSSF--A----KTYVGTPYYMSPEQLNHMSYDEK  190 (265)
T ss_pred             HHHhcCccccCcceecCCCHHHEEEec--CCCEEEecccccccccCCccc--c----cccccCCCccChhhhcCCCCCch
Confidence            7788     889999999999999986  899999999999987654310  0    01124556777888777667777


Q ss_pred             CCHHHHHHHHHHHHH
Q 004234          523 GDTTAVRRTAQFFLN  537 (766)
Q Consensus       523 ~D~~~l~~~i~~~l~  537 (766)
                      .|++++...+.+++.
T Consensus       191 ~Dv~slG~il~~l~~  205 (265)
T cd08217         191 SDIWSLGCLIYELCA  205 (265)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            899999877766553

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.29  E-value=1.5e-11  Score=129.01  Aligned_cols=184  Identities=14%  Similarity=0.123  Sum_probs=112.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                  ...      -.
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~~------~~   45 (285)
T cd07861           6 EKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEE----------------------------------GVP------ST   45 (285)
T ss_pred             eEecccCceEEEEEEECCCCcEEEEEEeccccccC----------------------------------Cch------HH
Confidence            5799999999999998  58999999874321110                                  000      01


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhh-hh-cCCCHHHHHHHHHH--HHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DE-LGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~~-~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      +.+|...+..+.     ++++ .+...+ ......++||||++| .+.+.... .. ..++...+...+.+  ..+..+|
T Consensus        46 ~~~e~~~l~~l~-----h~~i~~~~~~~-~~~~~~~~v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH  118 (285)
T cd07861          46 AIREISLLKELQ-----HPNIVCLQDVL-MQESRLYLIFEFLSM-DLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCH  118 (285)
T ss_pred             HHHHHHHHHhcC-----CCCEeeeEEEE-eeCCeEEEEEecCCC-CHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence            233444444432     2222 222222 234567999999986 56554321 11 23444444433332  3367889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRR  530 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~  530 (766)
                      ..|++|+|++|.||+++.  +|.++|+|||++..+....+..      ........+++++..... ..+...|++++..
T Consensus       119 ~~~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~  190 (285)
T cd07861         119 SRRVLHRDLKPQNLLIDN--KGVIKLADFGLARAFGIPVRVY------THEVVTLWYRAPEVLLGSPRYSTPVDIWSIGT  190 (285)
T ss_pred             hCCeeecCCCHHHEEEcC--CCcEEECcccceeecCCCcccc------cCCcccccccChHHhcCCCCcCcHHHHHHHHH
Confidence            999999999999999986  8999999999998764432210      001124456667765432 2355679999887


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       191 il~~l~t  197 (285)
T cd07861         191 IFAEMAT  197 (285)
T ss_pred             HHHHHHH
Confidence            7666543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.29  E-value=3.5e-11  Score=125.69  Aligned_cols=184  Identities=17%  Similarity=0.153  Sum_probs=117.2

Q ss_pred             ccccccceeEEEEEee-c--C--eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-K--G--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~--G--~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.+|.|++|.||+|++ +  +  ..|+||..+......                                         .
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~-----------------------------------------~   50 (270)
T cd05056          12 RCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPS-----------------------------------------V   50 (270)
T ss_pred             eeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHH-----------------------------------------H
Confidence            6799999999999997 2  2  368889764322110                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~  451 (766)
                      .-.|.+|+..+.++    .+..-+.+..++  .....+++|||++|++|.++........+...+...+  +...+..+|
T Consensus        51 ~~~~~~e~~~l~~~----~h~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH  124 (270)
T cd05056          51 REKFLQEAYIMRQF----DHPHIVKLIGVI--TENPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLE  124 (270)
T ss_pred             HHHHHHHHHHHHhC----CCCchhceeEEE--cCCCcEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            11344455544444    222122222222  2355789999999999998764333334444433332  223467889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|++|.||+++.  ++.++++|||++..+......  ..   ........+++++.......+...|++++...
T Consensus       125 ~~~~~H~dl~p~nili~~--~~~~~l~d~g~~~~~~~~~~~--~~---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  197 (270)
T cd05056         125 SKRFVHRDIAARNVLVSS--PDCVKLGDFGLSRYLEDESYY--KA---SKGKLPIKWMAPESINFRRFTSASDVWMFGVC  197 (270)
T ss_pred             hCCeeccccChheEEEec--CCCeEEccCceeeecccccce--ec---CCCCccccccChhhhccCCCCchhhhHHHHHH
Confidence            999999999999999986  789999999999877554210  00   01122345777887766666778899999876


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       198 l~el~  202 (270)
T cd05056         198 MWEIL  202 (270)
T ss_pred             HHHHH
Confidence            65543

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.29  E-value=2.2e-11  Score=127.73  Aligned_cols=184  Identities=13%  Similarity=0.110  Sum_probs=112.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|+.  +|+.||||+.+......                           .              .-.
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~---------------------------~--------------~~~   44 (284)
T cd07836           6 EKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEG---------------------------T--------------PST   44 (284)
T ss_pred             eeeccCCceEEEEEEECCCCeEEEEEEeccccccc---------------------------c--------------hHH
Confidence            6799999999999999  59999999875332110                           0              001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh--cCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE--LGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~--~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      +.+|+..+..+.     ++++.-..-+.......+|||||++| .+.++.....  ..++...+...+.+  ..+..+|.
T Consensus        45 ~~~E~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~  118 (284)
T cd07836          45 AIREISLMKELK-----HENIVRLHDVIHTENKLMLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHE  118 (284)
T ss_pred             HHHHHHHHHhhc-----CCCEeeeeeeEeeCCcEEEEEecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            233555444442     23332222222334567999999997 5665432211  22444444333332  33678899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRT  531 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~~  531 (766)
                      .|++|+|++|.||++++  ++.++++|||++..+.........      ...+..++.++....+ ..+...|++++...
T Consensus       119 ~~i~h~dl~p~ni~~~~--~~~~~l~d~g~~~~~~~~~~~~~~------~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~  190 (284)
T cd07836         119 NRVLHRDLKPQNLLINK--RGELKLADFGLARAFGIPVNTFSN------EVVTLWYRAPDVLLGSRTYSTSIDIWSVGCI  190 (284)
T ss_pred             CCeeeCCCCHHHEEECC--CCcEEEeecchhhhhcCCcccccc------ccccccccChHHhcCCCCCCcHHHHHHHHHH
Confidence            99999999999999985  889999999999766433211000      0123445666655332 33556788888876


Q ss_pred             HHHHHH
Q 004234          532 AQFFLN  537 (766)
Q Consensus       532 i~~~l~  537 (766)
                      +.+++.
T Consensus       191 l~~l~~  196 (284)
T cd07836         191 MAEMIT  196 (284)
T ss_pred             HHHHHh
Confidence            665543

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.29  E-value=2.6e-11  Score=124.49  Aligned_cols=158  Identities=18%  Similarity=0.216  Sum_probs=104.5

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.+++++||+||.+...|++++.+...    ..                   |       -|   .....    .. -+.
T Consensus         8 ~~l~~~~f~~v~~~~~~~~k~~~~~l~----~~-------------------~-------~~---~~~~~----~~-l~~   49 (218)
T PRK12274          8 EPLKSDTFGRILLVRGGERKFVRRDLS----AA-------------------P-------WW---LRGVA----WW-LAR   49 (218)
T ss_pred             eeecCCCcceEEEeecCCceeeecccc----cc-------------------h-------hh---hhhHH----HH-HHH
Confidence            679999999999777778877766331    00                   0       00   00000    11 356


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHA  458 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~GffHa  458 (766)
                      +|++.+.++.+      ...+|.++.-  ...+++|||++|.+|.+....     ....+... +...++++|..|++|+
T Consensus        50 rE~~iL~~L~~------~~~vP~ll~~--~~~~lvmeyI~G~~L~~~~~~-----~~~~~~~q-i~~~L~~lH~~GIvHr  115 (218)
T PRK12274         50 REALALRQLDG------LPRTPRLLHW--DGRHLDRSYLAGAAMYQRPPR-----GDLAYFRA-ARRLLQQLHRCGVAHN  115 (218)
T ss_pred             HHHHHHHhcCC------CCCCCEEEEE--cCEEEEEeeecCccHHhhhhh-----hhHHHHHH-HHHHHHHHHHCcCccC
Confidence            67777776532      2457888752  567999999999998754211     11222222 2346888999999999


Q ss_pred             CC-CCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004234          459 DP-HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (766)
Q Consensus       459 Dp-HPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~  515 (766)
                      |+ ||+||+++.  +|.++|+|||++....+..+  .   ..-+..+|...+...+..
T Consensus       116 DL~kp~NILv~~--~g~i~LIDFG~A~~~~~~~~--~---~r~L~~rDl~~llk~~~~  166 (218)
T PRK12274        116 DLAKEANWLVQE--DGSPAVIDFQLAVRGNPRAR--W---MRLLAREDLRHLLKHKRM  166 (218)
T ss_pred             CCCCcceEEEcC--CCCEEEEECCCceecCCcch--H---HHHHHHHHHHHHHHHHHh
Confidence            99 799999985  78999999999997765433  1   111234788888887755

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.29  E-value=2.3e-11  Score=132.77  Aligned_cols=140  Identities=21%  Similarity=0.285  Sum_probs=94.1

Q ss_pred             ccccccceeEEEEEeec--CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~--G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      .-+|.|.+|.||.|+++  +...|+||+-..          .|..      +                +.+       ..
T Consensus        83 k~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~----------~l~~------r----------------kKl-------~R  123 (459)
T KOG0610|consen   83 KRLGCGDIGTVYLVELRGTNCLFAMKVMDKE----------SLAS------R----------------KKL-------KR  123 (459)
T ss_pred             HHcCCCCceeEEEEEecCCCceEEEEEecHH----------HHhh------h----------------hHH-------HH
Confidence            56999999999999995  589999998211          1000      0                000       00


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCe--EEEEeecCCCChhhhhhhhhcC-C--CHHHHHHHHHHHHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQ--ILTMEYVPGIKINRIQSLDELG-V--DRKRLGRYAVESYLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~--vLVMEyieG~~L~d~~~l~~~g-~--d~~~la~~lv~~~l~qI~  451 (766)
                      -..|...+.       ..++-.+|..|..+.+..  +|+||||+|+.|..+.+-.... +  +..+.-..-+-..|+++|
T Consensus       124 a~tE~eIL~-------~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLH  196 (459)
T KOG0610|consen  124 AQTEREILS-------LLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLH  196 (459)
T ss_pred             HHHHHHHHH-------hcCCCccchhhheeeccceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHH
Confidence            111222222       223346788888877765  8999999999999865432221 1  122222223345588999


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceecc
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  486 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L  486 (766)
                      -.||+.||+||+||||.+  +|+|.|.||-++.+.
T Consensus       197 mlGivYRDLKPENILvre--dGHIMLsDFDLS~~~  229 (459)
T KOG0610|consen  197 MLGIVYRDLKPENILVRE--DGHIMLSDFDLSLRC  229 (459)
T ss_pred             hhceeeccCCcceeEEec--CCcEEeeeccccccC
Confidence            999999999999999997  999999999987654

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.29  E-value=2.9e-11  Score=127.84  Aligned_cols=186  Identities=15%  Similarity=0.137  Sum_probs=116.8

Q ss_pred             ccccccceeEEEEEeec-------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||.|++|.||+|...       ...||+|+.+.+....                                        
T Consensus        18 ~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~----------------------------------------   57 (293)
T cd05053          18 KPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEK----------------------------------------   57 (293)
T ss_pred             eEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHH----------------------------------------
Confidence            68999999999999972       2679999875432111                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDR  435 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~  435 (766)
                       ...++.+|..-+.++.    +++++ .+..++ ......+++|||++|++|.++.....               ..++.
T Consensus        58 -~~~~~~~E~~~l~~l~----~h~~i~~~~~~~-~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~  131 (293)
T cd05053          58 -DLSDLVSEMEMMKMIG----KHKNIINLLGVC-TQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQ  131 (293)
T ss_pred             -HHHHHHHHHHHHHhhc----CCCCeeeEEEEE-cCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCH
Confidence             0112344444343331    22332 232322 33456799999999999988653211               11233


Q ss_pred             HHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004234          436 KRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (766)
Q Consensus       436 ~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l  513 (766)
                      ..+...+.+  ..+..+|..|++|+|++|.||++++  ++.++|+|||.+..+.........    ........+++++.
T Consensus       132 ~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~~~--~~~~kL~Dfg~~~~~~~~~~~~~~----~~~~~~~~y~aPE~  205 (293)
T cd05053         132 KDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTE--DHVMKIADFGLARDIHHIDYYRKT----TNGRLPVKWMAPEA  205 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccccceeeEEEcC--CCeEEeCccccccccccccceecc----CCCCCCccccCHHH
Confidence            333333322  3467889999999999999999986  899999999999876543211000    00111234667777


Q ss_pred             HHcCCCCCCCCHHHHHHHHHHHH
Q 004234          514 VQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       514 ~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ...+..+...|++++...+.+++
T Consensus       206 ~~~~~~~~~~Di~slG~il~el~  228 (293)
T cd05053         206 LFDRVYTHQSDVWSFGVLLWEIF  228 (293)
T ss_pred             hccCCcCcccceeehhhHHHHHh
Confidence            66666777889999987765543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.28  E-value=2.3e-11  Score=129.96  Aligned_cols=189  Identities=14%  Similarity=0.119  Sum_probs=112.0

Q ss_pred             CcccccccceeEEEEEee----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          297 DVEPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       297 d~~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +...||.|++|.||+|+.    ++..||+|..++.-.                                           
T Consensus         5 ~g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~-------------------------------------------   41 (317)
T cd07867           5 EGCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI-------------------------------------------   41 (317)
T ss_pred             eceEeccCCCeeEEEEEecCCCccceEEEEEecCCCC-------------------------------------------
Confidence            345799999999999997    257899997642110                                           


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhh--------hcCCCHHHHHHHH-
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLD--------ELGVDRKRLGRYA-  442 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~--------~~g~d~~~la~~l-  442 (766)
                       ...+.+|++.+.++    .+..-+.+..++... ....+++|||+++ .+.++....        ...++...+...+ 
T Consensus        42 -~~~~~~E~~~l~~l----~h~niv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~  115 (317)
T cd07867          42 -SMSACREIALLREL----KHPNVIALQKVFLSHSDRKVWLLFDYAEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLY  115 (317)
T ss_pred             -cHHHHHHHHHHHhC----CCCCeeeEEEEEeccCCCeEEEEEeeeCC-cHHHHHHhhhccccCCCCccCCHHHHHHHHH
Confidence             00122344433333    222223333333222 2346899999987 444432211        0112332222222 


Q ss_pred             -HHHHHHHHHhCCccccCCCCCcEEEee--cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CC
Q 004234          443 -VESYLEQILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GV  518 (766)
Q Consensus       443 -v~~~l~qI~~~GffHaDpHPGNILV~~--~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~  518 (766)
                       +-..+..+|..|++|+|+||.||++..  ..++.++|+|||++..+....... ..  .....++..++++++..- ..
T Consensus       116 qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~-~~--~~~~~~t~~y~aPE~~~~~~~  192 (317)
T cd07867         116 QILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPL-AD--LDPVVVTFWYRAPELLLGARH  192 (317)
T ss_pred             HHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccc-cc--cCcceecccccCcHHhcCCCc
Confidence             223477889999999999999999952  135789999999998775432210 00  011123556778887653 33


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 004234          519 LVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       519 ~~~~~D~~~l~~~i~~~l~  537 (766)
                      .+...|++++...+.+++.
T Consensus       193 ~~~~~DiwSlG~il~el~t  211 (317)
T cd07867         193 YTKAIDIWAIGCIFAELLT  211 (317)
T ss_pred             cCcHHHHHhHHHHHHHHHh
Confidence            5667899999987776653

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.28  E-value=3.7e-11  Score=123.24  Aligned_cols=182  Identities=18%  Similarity=0.166  Sum_probs=115.8

Q ss_pred             ccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       301 IgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +|.|++|+||++..  +|+.|++|+.+.+....-                                       .....+.
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~---------------------------------------~~~~~~~   41 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKR---------------------------------------KEVEHTL   41 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcch---------------------------------------HHHHHHH
Confidence            68999999999998  489999998754321110                                       0011222


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~~G  454 (766)
                      .|...+..+.     +++  ++.++.  +.....+++|||++|.+|.+..... ..++...+...+.  -..+..+|..|
T Consensus        42 ~e~~~l~~l~-----h~~--i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lh~~~  113 (250)
T cd05123          42 TERNILSRIN-----HPF--IVKLHYAFQTEEKLYLVLEYAPGGELFSHLSKE-GRFSEERARFYAAEIVLALEYLHSLG  113 (250)
T ss_pred             HHHHHHHHcC-----CCc--HHHHHHHeecCCeeEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            3333333221     111  222221  2244569999999999998865322 1344444443332  23467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||+++.  ++.++++|||++.........      .....+...++.++...-...++..|.+++...+.+
T Consensus       114 ~~H~~l~p~ni~~~~--~~~~~l~d~~~~~~~~~~~~~------~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~  185 (250)
T cd05123         114 IIYRDLKPENILLDA--DGHIKLTDFGLAKELSSEGSR------TNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYE  185 (250)
T ss_pred             ceecCCCcceEEEcC--CCcEEEeecCcceecccCCCc------ccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHH
Confidence            999999999999986  889999999999877553210      111234556667777665556677899999877665


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       186 l~~  188 (250)
T cd05123         186 MLT  188 (250)
T ss_pred             HHH
Confidence            553

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.28  E-value=1.7e-11  Score=143.92  Aligned_cols=191  Identities=14%  Similarity=0.110  Sum_probs=116.5

Q ss_pred             ccccccceeEEEEEee-c-CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-K-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~-G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|+||+||.|++ . |.+||+|.+.-. .                                   ++--+.+.+|++
T Consensus        43 ~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~-d-----------------------------------e~~L~~v~~EI~   86 (738)
T KOG1989|consen   43 KVLAEGGFAQVYLAQDVKGGKKYALKRMYVN-D-----------------------------------EEALNAVKREID   86 (738)
T ss_pred             EEEccCCcEEEEEEEecCCCceeeeeeeecC-C-----------------------------------HHHHHHHHHHHH
Confidence            5799999999999999 4 499999977322 1                                   111123455666


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC----CCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHHHH--HHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT----TPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVESY--LEQ  449 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s----t~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~lv~~~--l~q  449 (766)
                      ++...++....-..+...       .....+    -+..|.||||.|+.|-|+..- ...++...++...+.+.+  +..
T Consensus        87 ~MK~L~gh~nIV~yidss-------~~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~  159 (738)
T KOG1989|consen   87 IMKLLSGHKNIVSYIDSS-------AINRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAA  159 (738)
T ss_pred             HHHHhcCCCceeeEeccc-------cccccCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence            555443211111111100       000001    134799999999999887542 233467777777765544  667


Q ss_pred             HHhCC--ccccCCCCCcEEEeecCCCcEEEEeecceeccChhh--HHHHHHHHHHHh-hcCH----HHHHHHHHHcCCCC
Q 004234          450 ILSHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNI--REGLLEAFYGIY-EKDA----DKVLQAMVQMGVLV  520 (766)
Q Consensus       450 I~~~G--ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~--r~~l~~l~~a~~-~~D~----~~v~~~l~~lG~~~  520 (766)
                      +|...  ++|||||-+|||+..  +|..+|||||.+.......  .....-+=.-+. .-++    ..|++.+..+++ .
T Consensus       160 mH~~~pPiIHRDLKiENvLls~--~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI-~  236 (738)
T KOG1989|consen  160 MHYLKPPIIHRDLKIENVLLSA--DGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPI-G  236 (738)
T ss_pred             HhcCCCccchhhhhhhheEEcC--CCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCC-c
Confidence            78766  999999999999986  8999999999987542221  111111111111 1122    334455544554 6


Q ss_pred             CCCCHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFF  535 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~  535 (766)
                      ++.|+++|...++.+
T Consensus       237 eKsDIWALGclLYkL  251 (738)
T KOG1989|consen  237 EKSDIWALGCLLYKL  251 (738)
T ss_pred             chhHHHHHHHHHHHH
Confidence            788999999877655

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.28  E-value=2.6e-11  Score=129.19  Aligned_cols=182  Identities=19%  Similarity=0.157  Sum_probs=117.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|+|++|.||+|..  +|+.|++|+....-..                                          ..-.
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~------------------------------------------~~~~   62 (293)
T cd06647          25 EKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQP------------------------------------------KKEL   62 (293)
T ss_pred             eEecCCCCeEEEEEEEcCCCCEEEEEEeccccch------------------------------------------HHHH
Confidence            6899999999999987  6899999976211000                                          0001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|...+..+    . ++++.-..-+.......++||||++|++|.++...  ...+...+...+.+  ..+..+|..|
T Consensus        63 ~~~e~~~l~~l----~-hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~l~~~~~~~i~~~l~~al~~LH~~g  135 (293)
T cd06647          63 IINEILVMREN----K-HPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE--TCMDEGQIAAVCRECLQALEFLHSNQ  135 (293)
T ss_pred             HHHHHHHHhhc----C-CCCeeehhheeeeCCcEEEEEecCCCCcHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            23333322222    2 23322222122234568999999999999986532  22333333332222  2367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||+++.  ++.++++|||++..+.+.....      ....+...++.+++...+..+...|++++...+.+
T Consensus       136 i~H~dL~p~Nili~~--~~~~kL~dfg~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~  207 (293)
T cd06647         136 VIHRDIKSDNILLGM--DGSVKLTDFGFCAQITPEQSKR------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIE  207 (293)
T ss_pred             EeeccCCHHHEEEcC--CCCEEEccCcceeccccccccc------ccccCChhhcCchhhccCCCCchhhHHHHHHHHHH
Confidence            999999999999986  7899999999988776543211      11124456777887777777778999999877766


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       208 ll~  210 (293)
T cd06647         208 MVE  210 (293)
T ss_pred             HHh
Confidence            553

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.28  E-value=5.3e-12  Score=140.68  Aligned_cols=185  Identities=14%  Similarity=0.150  Sum_probs=134.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|.|+||-++..+.  ++..+|+|..+=.                                  ...+..++...+|++
T Consensus        10 ~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~----------------------------------~~t~~~r~~A~~E~~   55 (426)
T KOG0589|consen   10 RQVGRGAFGSALLVRHKSDDKLYVLKKINLE----------------------------------KLTEPERRSAIQEMD   55 (426)
T ss_pred             hhcCccccchhhhhhhccCCceEEEEEEecc----------------------------------ccCchhhHHHHHHHH
Confidence            5799999999988887  5889999976210                                  011112223334433


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCC-eEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHHHH--HHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTP-QILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVESY--LEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~-~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~~~--l~qI~~  452 (766)
                      +.      .    ...+..-|..+..+.+ .+. .++||+|++|+++.+...-.+ .-++.+++....++..  +..+|+
T Consensus        56 li------s----~~~hP~iv~y~ds~~~-~~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~  124 (426)
T KOG0589|consen   56 LL------S----KLLHPNIVEYKDSFEE-DGQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHE  124 (426)
T ss_pred             HH------H----hccCCCeeeeccchhc-CCceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh
Confidence            32      2    2334334555555443 444 899999999999999654333 4467788888887765  778999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      ..++|||+|+.|||++.  ++.|+|.|||+++.+.++.  .++    ..+-+++.++.+++++---.....|++++.-.+
T Consensus       125 ~~iLHRDlK~~Nifltk--~~~VkLgDfGlaK~l~~~~--~~a----~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~  196 (426)
T KOG0589|consen  125 NRVLHRDLKCANIFLTK--DKKVKLGDFGLAKILNPED--SLA----STVVGTPYYMCPEILSDIPYNEKSDIWSLGCCL  196 (426)
T ss_pred             hhhhcccchhhhhhccc--cCceeecchhhhhhcCCch--hhh----heecCCCcccCHHHhCCCCCCccCcchhhcchH
Confidence            99999999999999996  8889999999999998875  222    334579999999999866666788999999877


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      +++.
T Consensus       197 yEm~  200 (426)
T KOG0589|consen  197 YEMC  200 (426)
T ss_pred             HHHH
Confidence            7654

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.28  E-value=7.5e-11  Score=122.32  Aligned_cols=182  Identities=15%  Similarity=0.173  Sum_probs=116.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +++|+|++|.||+|..  +++.|++|+..+....                                           +-+
T Consensus        12 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~-------------------------------------------~~~   48 (275)
T cd06608          12 EVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDE-------------------------------------------EEE   48 (275)
T ss_pred             eeecCCCCeEEEEEEECCCCcEEEEEEEecCchh-------------------------------------------HHH
Confidence            6899999999999999  5889999987433110                                           112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc--------CCCeEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHHH--
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY--------TTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYAV--  443 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~--------st~~vLVMEyieG~~L~d~~~l~~---~g~d~~~la~~lv--  443 (766)
                      +.+|...+.++.    ++++  +++++..+        ....+++|||++|++|.++.....   ..++...+...+.  
T Consensus        49 ~~~e~~~l~~~~----~h~~--i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql  122 (275)
T cd06608          49 IKEEYNILRKYS----NHPN--IATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRET  122 (275)
T ss_pred             HHHHHHHHHHhc----CCCC--hheEEEEEEecCCCCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence            334444444432    1222  22322211        233689999999999988654221   2334443333322  


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-----C
Q 004234          444 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-----V  518 (766)
Q Consensus       444 ~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-----~  518 (766)
                      ...+..+|..|++|+|++|.||+++.  ++.++|+|||++..+.......      ....+...++++++....     .
T Consensus       123 ~~al~~lH~~~i~H~~l~p~ni~~~~--~~~~~l~d~~~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~  194 (275)
T cd06608         123 LRGLAYLHENKVIHRDIKGQNILLTK--NAEVKLVDFGVSAQLDSTLGRR------NTFIGTPYWMAPEVIACDEQPDAS  194 (275)
T ss_pred             HHHHHHHhcCCcccCCCCHHHEEEcc--CCeEEECCCccceecccchhhh------cCccccccccCHhHhcccccccCC
Confidence            23367889999999999999999986  7899999999998765432211      112245567777776432     2


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 004234          519 LVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       519 ~~~~~D~~~l~~~i~~~l~  537 (766)
                      .....|++++...+.+++.
T Consensus       195 ~~~~~Dv~slG~il~~l~~  213 (275)
T cd06608         195 YDARSDVWSLGITAIELAD  213 (275)
T ss_pred             ccccccHHHhHHHHHHHHh
Confidence            3456799999877766553

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.28  E-value=2.7e-11  Score=128.24  Aligned_cols=183  Identities=16%  Similarity=0.123  Sum_probs=115.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|..  +|+.|+||..+......                                  .+      ..+
T Consensus        11 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~------~~~   50 (293)
T cd07843          11 NRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKE----------------------------------GF------PIT   50 (293)
T ss_pred             hhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccc----------------------------------cc------hhh
Confidence            6799999999999999  58999999874321110                                  00      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccC--CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~s--t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      +.+|...+.++.     ++++ .+...+ .-.  ...+++|||+++ .|.++.......++...+...+.+  ..+..+|
T Consensus        51 ~~~e~~~l~~l~-----h~ni~~~~~~~-~~~~~~~~~lv~e~~~~-~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH  123 (293)
T cd07843          51 SLREINILLKLQ-----HPNIVTVKEVV-VGSNLDKIYMVMEYVEH-DLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLH  123 (293)
T ss_pred             HHHHHHHHHhcC-----CCCEEEEEEEE-EecCCCcEEEEehhcCc-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            334444444442     2332 222221 222  678999999987 776654332223455554444433  3478889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRR  530 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~  530 (766)
                      ..|++|+|++|+||+++.  ++.++++|||++..+.......      ....++..+++++....+ ..+...|++++..
T Consensus       124 ~~~i~H~dl~p~nili~~--~~~~~l~d~g~~~~~~~~~~~~------~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~  195 (293)
T cd07843         124 DNWILHRDLKTSNLLLNN--RGILKICDFGLAREYGSPLKPY------TQLVVTLWYRAPELLLGAKEYSTAIDMWSVGC  195 (293)
T ss_pred             HCCeeeccCCHHHEEECC--CCcEEEeecCceeeccCCcccc------ccccccccccCchhhcCCccccchhhHHHHHH
Confidence            999999999999999986  7899999999998776542111      011234456667765432 3456689999987


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       196 ~l~~l~  201 (293)
T cd07843         196 IFAELL  201 (293)
T ss_pred             HHHHHH
Confidence            766554

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.27  E-value=8e-11  Score=117.69  Aligned_cols=139  Identities=25%  Similarity=0.305  Sum_probs=104.6

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      .+++.|.-+.++.+.+.|.++++|..-|.....-+.|-+                                 +.+| .-.
T Consensus         2 ~~i~~GAEa~i~~~~~~g~~av~K~Ri~K~YR~p~LD~k---------------------------------lrr~-Rt~   47 (204)
T COG3642           2 DLIKQGAEAIIYLTDFLGLPAVVKERIPKRYRHPELDEK---------------------------------LRRE-RTR   47 (204)
T ss_pred             chhhCCcceeEEeeeccCcceEEEeecCcccCChHHHHH---------------------------------HHHH-HHH
Confidence            467889999999998888889999886655444333322                                 2222 457


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHA  458 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~GffHa  458 (766)
                      +||+.+.+.+.     ..|.+|.+|.-......|+|||++|..+.|...-.     +..+.+. +-..+.-+|..||+|+
T Consensus        48 ~Earil~~a~~-----~GV~~P~v~dvD~~~~~I~me~I~G~~lkd~l~~~-----~~~~~r~-vG~~vg~lH~~givHG  116 (204)
T COG3642          48 REARILAKARE-----AGVPVPIVYDVDPDNGLIVMEYIEGELLKDALEEA-----RPDLLRE-VGRLVGKLHKAGIVHG  116 (204)
T ss_pred             HHHHHHHHHHH-----cCCCCCeEEEEcCCCCEEEEEEeCChhHHHHHHhc-----chHHHHH-HHHHHHHHHhcCeecC
Confidence            89999988876     36899999988888889999999999998764321     1122222 2334567899999999


Q ss_pred             CCCCCcEEEeecCCCcEEEEeecceec
Q 004234          459 DPHPGNIAVDDVNGGRLIFYDFGMMGS  485 (766)
Q Consensus       459 DpHPGNILV~~~~~g~l~LiDFGlv~~  485 (766)
                      ||.+.||++.   ++++++||||+...
T Consensus       117 DLTtsNiIl~---~~~i~~IDfGLg~~  140 (204)
T COG3642         117 DLTTSNIILS---GGRIYFIDFGLGEF  140 (204)
T ss_pred             CCccceEEEe---CCcEEEEECCcccc
Confidence            9999999997   56799999999874

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.27  E-value=3.3e-11  Score=127.58  Aligned_cols=185  Identities=15%  Similarity=0.115  Sum_probs=117.5

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.+|.|++|.||++..       ++..||+|..+-..                                    ..     
T Consensus        11 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~------------------------------------~~-----   49 (288)
T cd05093          11 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS------------------------------------DN-----   49 (288)
T ss_pred             cccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcC------------------------------------HH-----
Confidence            5799999999999985       24568888652110                                    00     


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh------------cCCCHHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE------------LGVDRKRLG  439 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~------------~g~d~~~la  439 (766)
                       ..-++.+|+..+.++    . ++++....-+.......+++|||++|++|.++.....            ..++...+.
T Consensus        50 -~~~~~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~  123 (288)
T cd05093          50 -ARKDFHREAELLTNL----Q-HEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQML  123 (288)
T ss_pred             -HHHHHHHHHHHHHhC----C-CCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHH
Confidence             011344555544443    2 2333222222334567899999999999988653211            113444443


Q ss_pred             HHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC
Q 004234          440 RYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG  517 (766)
Q Consensus       440 ~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG  517 (766)
                      ..+.+  ..+..+|..|++|+|++|.||++++  ++.++++|||++..+........    .........+++++....+
T Consensus       124 ~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~  197 (288)
T cd05093         124 HIAQQIAAGMVYLASQHFVHRDLATRNCLVGE--NLLVKIGDFGMSRDVYSTDYYRV----GGHTMLPIRWMPPESIMYR  197 (288)
T ss_pred             HHHHHHHHHHHHHHhCCeeecccCcceEEEcc--CCcEEeccCCccccccCCceeec----CCCCCccccccCHHHhccC
Confidence            33332  3367889999999999999999986  88999999999887643221100    0011124567888888777


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q 004234          518 VLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       518 ~~~~~~D~~~l~~~i~~~l  536 (766)
                      ..++..|++++...+.+++
T Consensus       198 ~~~~~sDiwslG~il~~l~  216 (288)
T cd05093         198 KFTTESDVWSLGVVLWEIF  216 (288)
T ss_pred             CCCchhhHHHHHHHHHHHH
Confidence            7777899999987776654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.27  E-value=5e-11  Score=124.24  Aligned_cols=191  Identities=16%  Similarity=0.082  Sum_probs=117.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.|++|+...+.....                          .     .      ...-+
T Consensus         8 ~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~--------------------------~-----~------~~~~~   50 (264)
T cd06653           8 KLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQE--------------------------T-----S------KEVNA   50 (264)
T ss_pred             eeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccch--------------------------h-----h------HHHHH
Confidence            6799999999999998  599999997632211100                          0     0      01113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~  453 (766)
                      +.+|+..+.++.    +..-+.+...+... ....+++|||++|++|.+..... ...+...+....  +...+..+|..
T Consensus        51 ~~~ei~~l~~l~----h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~~i~~al~~LH~~  125 (264)
T cd06653          51 LECEIQLLKNLR----HDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQLKAY-GALTENVTRRYTRQILQGVSYLHSN  125 (264)
T ss_pred             HHHHHHHHHHcC----CCCcceEEEEEEcCCCCEEEEEEEeCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            445555454442    21112222222221 23468999999999998864321 123333332221  22346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|+||+++.  ++.+++.|||.+..+.........   .....+...++++++......+...|++++...+.
T Consensus       126 ~i~H~dl~p~ni~i~~--~~~~~l~dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  200 (264)
T cd06653         126 MIVHRDIKGANILRDS--AGNVKLGDFGASKRIQTICMSGTG---IKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVV  200 (264)
T ss_pred             CEecCCCCHHHEEEcC--CCCEEECccccccccccccccCcc---ccccCCcccccCHhhhcCCCCCccccHHHHHHHHH
Confidence            9999999999999985  889999999999876432111000   00112455677787776655677789999987776


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       201 ~l~  203 (264)
T cd06653         201 EML  203 (264)
T ss_pred             HHH
Confidence            654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.27  E-value=2.3e-11  Score=132.72  Aligned_cols=194  Identities=19%  Similarity=0.224  Sum_probs=117.3

Q ss_pred             HhCCChhhhhhccC-cccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccch
Q 004234          284 ELGAPLDDVFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW  360 (766)
Q Consensus       284 elG~~~eeiF~~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~  360 (766)
                      +.++.+.++...|. .++||+|++|.||+|+.  +|+.||||+.+......                             
T Consensus         5 ~~~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------   55 (342)
T cd07879           5 EVNKTVWELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSE-----------------------------   55 (342)
T ss_pred             hhhhhhhccccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccc-----------------------------
Confidence            45555555556664 48999999999999997  59999999874321100                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeec-----cCCCeEEEEeecCCCChhhhhhhhhcCCCH
Q 004234          361 VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDELGVDR  435 (766)
Q Consensus       361 ~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-----~st~~vLVMEyieG~~L~d~~~l~~~g~d~  435 (766)
                           .+..      ++..|...+..+.    +..-+.+..++..     .....++||||+++ .+.+..   ...+..
T Consensus        56 -----~~~~------~~~~e~~~l~~l~----h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~---~~~~~~  116 (342)
T cd07879          56 -----IFAK------RAYRELTLLKHMQ----HENVIGLLDVFTSAVSGDEFQDFYLVMPYMQT-DLQKIM---GHPLSE  116 (342)
T ss_pred             -----cchh------HHHHHHHHHHhcC----CCCccchhheecccccCCCCceEEEEeccccc-CHHHHH---cCCCCH
Confidence                 0001      1222333222221    1111222222211     12345899999975 444432   223444


Q ss_pred             HHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004234          436 KRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (766)
Q Consensus       436 ~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l  513 (766)
                      ..+...+.+  ..+..+|..|++|+|++|+||+++.  ++.++|+|||++...+.....         ..++..+++++.
T Consensus       117 ~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~--~~~~kL~dfg~~~~~~~~~~~---------~~~~~~y~aPE~  185 (342)
T cd07879         117 DKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNE--DCELKILDFGLARHADAEMTG---------YVVTRWYRAPEV  185 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECC--CCCEEEeeCCCCcCCCCCCCC---------ceeeecccChhh
Confidence            443333322  3467889999999999999999986  899999999998876443211         122445667776


Q ss_pred             HHcC-CCCCCCCHHHHHHHHHHHH
Q 004234          514 VQMG-VLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       514 ~~lG-~~~~~~D~~~l~~~i~~~l  536 (766)
                      ...+ ..+...|++++...+.+++
T Consensus       186 ~~~~~~~~~~~Dv~slGvil~el~  209 (342)
T cd07879         186 ILNWMHYNQTVDIWSVGCIMAEML  209 (342)
T ss_pred             hcCccccCchHHHHHHHHHHHHHH
Confidence            6442 3556789999987776655

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.27  E-value=9.2e-11  Score=121.15  Aligned_cols=184  Identities=14%  Similarity=0.149  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCC-ccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPG-LKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~-i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      +.+|+|++|.||.++.  +|+.||+|..... ...                                  .       ..-
T Consensus         6 ~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~-------~~~   44 (256)
T cd08218           6 KKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSP----------------------------------K-------ERE   44 (256)
T ss_pred             EEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCCh----------------------------------H-------HHH
Confidence            5799999999999998  5899999976210 000                                  0       001


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHHh
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      ++.+|...+.++    . ++++.-..-+.+.....+++|||++|++|.+...... ...+...+...+.+  ..+..+|.
T Consensus        45 ~~~~e~~~l~~l----~-~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~  119 (256)
T cd08218          45 ESRKEVAVLSNM----K-HPNIVQYQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHD  119 (256)
T ss_pred             HHHHHHHHHHhC----C-CCCeeeeEeeecCCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            233444434333    2 2332211112233456799999999999988653321 23344444333322  23677899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      .|++|+|++|.||+++.  ++.++++|||++..+.......      ....+...+++++...-+..+...|++++...+
T Consensus       120 ~~i~h~~l~~~nil~~~--~~~~~l~d~~~~~~~~~~~~~~------~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~  191 (256)
T cd08218         120 RKILHRDIKSQNIFLTK--DGTIKLGDFGIARVLNSTVELA------RTCIGTPYYLSPEICENRPYNNKSDIWALGCVL  191 (256)
T ss_pred             CCEecCCCCHHHEEEcC--CCCEEEeeccceeecCcchhhh------hhccCCccccCHHHhCCCCCCCccchhHHHHHH
Confidence            99999999999999985  7899999999998776543211      112245567788887767777788999998776


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       192 ~~l~  195 (256)
T cd08218         192 YEMC  195 (256)
T ss_pred             HHHH
Confidence            6554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.27  E-value=1.8e-11  Score=127.34  Aligned_cols=118  Identities=14%  Similarity=0.063  Sum_probs=81.6

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCC--------cEE
Q 004234          407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGG--------RLI  476 (766)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~GffHaDpHPGNILV~~~~~g--------~l~  476 (766)
                      ....+++|||++|++|.++........+.......+  +-..+..+|..|++|+|++|.||+++.  ++        .++
T Consensus        71 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~--~~~~~~~~~~~~~  148 (258)
T cd05078          71 GDESIMVQEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIR--EEDRKTGNPPFIK  148 (258)
T ss_pred             CCCcEEEEecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEec--ccccccCCCceEE
Confidence            356799999999999988754333334444433322  223467889999999999999999985  33        379


Q ss_pred             EEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHHHHH
Q 004234          477 FYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       477 LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i~~~l  536 (766)
                      ++|||......+..          ...++..+++++...- +..+...|++++...+.+++
T Consensus       149 l~d~g~~~~~~~~~----------~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~  199 (258)
T cd05078         149 LSDPGISITVLPKE----------ILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIF  199 (258)
T ss_pred             ecccccccccCCch----------hccccCCccCchhccCCCCCCchhhHHHHHHHHHHHH
Confidence            99999887654421          1234556777776654 34566789999987766654

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.27  E-value=2.1e-11  Score=127.50  Aligned_cols=187  Identities=18%  Similarity=0.184  Sum_probs=115.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|+|++|+||+|+.  +|+.||||+.+......                                  +.      ..+
T Consensus         5 ~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~----------------------------------~~------~~~   44 (287)
T cd07840           5 AQIGEGTYGQVYKARNKKTGELVALKKIRMENEKE----------------------------------GF------PIT   44 (287)
T ss_pred             EEeccCCCeEEEEEEECCCCeEEEEEEEecccccc----------------------------------cc------hHH
Confidence            4689999999999998  48999999985432100                                  00      113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +..|...+.++.    +..-+.+..++..- ....+++|||+++ ++.++.......++...+...+.+  ..+..+|..
T Consensus        45 ~~~e~~~l~~l~----~~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~  119 (287)
T cd07840          45 AIREIKLLQKLR----HPNIVRLKEIVTSKGKGSIYMVFEYMDH-DLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSN  119 (287)
T ss_pred             HHHHHHHHHhcc----CCCeeeheeeEecCCCCcEEEEeccccc-cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            444555444442    22222333333322 2578999999986 676654322223444443333322  236788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~-lG~~~~~~D~~~l~~~i  532 (766)
                      |++|+|++|.||++++  ++.++++|||++..+..........     ...+..+++++... ....++..|++++...+
T Consensus       120 ~~~h~dl~p~nil~~~--~~~~~l~d~g~~~~~~~~~~~~~~~-----~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l  192 (287)
T cd07840         120 GILHRDIKGSNILINN--DGVLKLADFGLARPYTKRNSADYTN-----RVITLWYRPPELLLGATRYGPEVDMWSVGCIL  192 (287)
T ss_pred             CceeccCcHHHeEEcC--CCCEEEccccceeeccCCCcccccc-----cccccccCCceeeEccccCChHHHHHHHHHHH
Confidence            9999999999999986  8999999999998876543211110     01233445555332 22345667999888776


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       193 ~el~t  197 (287)
T cd07840         193 AELFL  197 (287)
T ss_pred             HHHHh
Confidence            66543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.27  E-value=5.5e-11  Score=124.07  Aligned_cols=191  Identities=14%  Similarity=0.086  Sum_probs=119.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|.|++|.||+|..  +|+.|++|+.+......-                               ..      ..-..
T Consensus         8 ~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~-------------------------------~~------~~~~~   50 (266)
T cd06651           8 KLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPE-------------------------------TS------KEVSA   50 (266)
T ss_pred             ceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCch-------------------------------hH------HHHHH
Confidence            6899999999999998  589999997743221110                               00      01113


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~  452 (766)
                      +.+|...+..+.     ++++ .+...+.+. ....+++|||++|++|.+..... ...+.......+  +...+..+|.
T Consensus        51 ~~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~LH~  124 (266)
T cd06651          51 LECEIQLLKNLQ-----HERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAY-GALTESVTRKYTRQILEGMSYLHS  124 (266)
T ss_pred             HHHHHHHHHHcC-----CCCeeeEEEEEEcCCCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            455555555442     2332 222222221 23468999999999998865321 123433333322  2234677899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      .|++|+|++|.||+++.  ++.++|+|||++..+.........   .....+...+++++.......+...|++++...+
T Consensus       125 ~~i~H~~l~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~  199 (266)
T cd06651         125 NMIVHRDIKGANILRDS--AGNVKLGDFGASKRLQTICMSGTG---IRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTV  199 (266)
T ss_pred             CCeeeCCCCHHHEEECC--CCCEEEccCCCccccccccccCCc---cccCCccccccCHHHhCCCCCCchhhhHHHHHHH
Confidence            99999999999999985  789999999998876432111000   0112345567788887766666778999998776


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       200 ~el~~  204 (266)
T cd06651         200 VEMLT  204 (266)
T ss_pred             HHHHH
Confidence            66553

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.27  E-value=2.4e-11  Score=127.58  Aligned_cols=185  Identities=19%  Similarity=0.213  Sum_probs=117.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|..  +|+.|+||+.+......                                  +...      .
T Consensus         7 ~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~----------------------------------~~~~------~   46 (288)
T cd07833           7 GVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDE----------------------------------DVKK------T   46 (288)
T ss_pred             EEecccCCeeEEEEEeCCCCcEEEEehhhhhcccc----------------------------------cchh------H
Confidence            5799999999999998  58999999874321100                                  0111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|.+.+.++.    +..-+.+..++.. ....+++|||++|..+..+.. ...+.+...+...+.+  ..+..+|..|
T Consensus        47 ~~~e~~~l~~l~----~~~i~~~~~~~~~-~~~~~iv~e~~~~~~l~~~~~-~~~~~~~~~~~~~~~~i~~~l~~LH~~~  120 (288)
T cd07833          47 ALREVKVLRQLR----HENIVNLKEAFRR-KGRLYLVFEYVERTLLELLEA-SPGGLPPDAVRSYIWQLLQAIAYCHSHN  120 (288)
T ss_pred             HHHHHHHHHhcC----CCCeeehhheEEE-CCEEEEEEecCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            333444444432    2222223333322 456799999999977765432 2233454444443332  3477889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|++|+||++++  ++.++|+|||++..+.........     ...+...++++++.... ..+...|++++...+.
T Consensus       121 i~H~dl~~~ni~~~~--~~~~kl~d~g~~~~~~~~~~~~~~-----~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~  193 (288)
T cd07833         121 IIHRDIKPENILVSE--SGVLKLCDFGFARALRARPASPLT-----DYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMA  193 (288)
T ss_pred             eecCCCCHHHeEECC--CCCEEEEeeecccccCCCcccccc-----CcccccCCcCCchhcCCCCcCchhhHHHHHHHHH
Confidence            999999999999986  899999999999887654431111     11233446667766555 5566789999887666


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       194 ~l~  196 (288)
T cd07833         194 ELL  196 (288)
T ss_pred             HHH
Confidence            554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.27  E-value=3.9e-11  Score=126.76  Aligned_cols=186  Identities=17%  Similarity=0.178  Sum_probs=111.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+.+......                           +       .      .-+
T Consensus         7 ~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~---------------------------~-------~------~~~   46 (295)
T cd07837           7 EKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEE---------------------------G-------I------PPT   46 (295)
T ss_pred             eEecccCCeEEEEEEECCCCcEEEEEeehhhcccc---------------------------C-------C------chH
Confidence            5689999999999998  58999999863321110                           0       0      012


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeeccCC----CeEEEEeecCCCChhhhhhhhh----cCCCHHHHHHHHHH--H
Q 004234          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEYTT----PQILTMEYVPGIKINRIQSLDE----LGVDRKRLGRYAVE--S  445 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~st----~~vLVMEyieG~~L~d~~~l~~----~g~d~~~la~~lv~--~  445 (766)
                      +.+|...+..+.    ++++ +.+..++.....    ..+++|||++| .+.+......    ..++...+...+.+  .
T Consensus        47 ~~~E~~~l~~l~----~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~  121 (295)
T cd07837          47 ALREISLLQMLS----ESIYIVRLLDVEHVEEKNGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLK  121 (295)
T ss_pred             HHHHHHHHHHcc----CCCCccceeeeEeecCCCCCceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Confidence            333444343332    2222 222222221111    25899999998 5666432211    12344444333333  3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCC
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGD  524 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D  524 (766)
                      .+..+|..|++|+|++|+||+++. .++.++++|||++..+.........      ..+.+.+++++.... ...+...|
T Consensus       122 ~L~~LH~~~i~H~dl~~~nil~~~-~~~~~kl~dfg~~~~~~~~~~~~~~------~~~~~~~~aPE~~~~~~~~~~~~D  194 (295)
T cd07837         122 GVAHCHKHGVMHRDLKPQNLLVDK-QKGLLKIADLGLGRAFSIPVKSYTH------EIVTLWYRAPEVLLGSTHYSTPVD  194 (295)
T ss_pred             HHHHHHHCCeeecCCChHHEEEec-CCCeEEEeecccceecCCCccccCC------cccccCCCChHHhhCCCCCCchHH
Confidence            477889999999999999999984 3688999999998876443211100      012344566665532 33466789


Q ss_pred             HHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFL  536 (766)
Q Consensus       525 ~~~l~~~i~~~l  536 (766)
                      ++++...+.+++
T Consensus       195 i~slG~~l~~l~  206 (295)
T cd07837         195 IWSVGCIFAEMS  206 (295)
T ss_pred             HHHHHHHHHHHH
Confidence            999987776654

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.27  E-value=2.4e-11  Score=129.62  Aligned_cols=138  Identities=16%  Similarity=0.129  Sum_probs=84.4

Q ss_pred             CccccceeeeccCC------CeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEE
Q 004234          395 DYVKVPTIFWEYTT------PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIA  466 (766)
Q Consensus       395 ~~V~vP~v~~e~st------~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~GffHaDpHPGNIL  466 (766)
                      .+..+|..+.....      ..+++||++.+ .+.+..... .......+...+  +...+..+|..|++|||+||.||+
T Consensus        81 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nil  158 (294)
T PHA02882         81 DHLGIPKYYGCGSFKRCRMYYRFILLEKLVE-NTKEIFKRI-KCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIM  158 (294)
T ss_pred             CCCCCCcEEEeeeEecCCceEEEEEEehhcc-CHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE
Confidence            34556666642111      23678887654 333332111 112233322222  223467889999999999999999


Q ss_pred             EeecCCCcEEEEeecceeccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          467 VDDVNGGRLIFYDFGMMGSISPNIREG-LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       467 V~~~~~g~l~LiDFGlv~~L~~~~r~~-l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +++  ++.++|+|||++..+....... +..-......+.+.+++++.......+...|++++...+.+++
T Consensus       159 l~~--~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~  227 (294)
T PHA02882        159 VDG--NNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWA  227 (294)
T ss_pred             EcC--CCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            985  7899999999998774322110 0101111224677788888877666778889999987776654

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.26  E-value=2.7e-11  Score=127.21  Aligned_cols=184  Identities=19%  Similarity=0.216  Sum_probs=112.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|.+  .|+.||+|+........                                  ...+      +
T Consensus         7 ~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~----------------------------------~~~~------~   46 (286)
T cd07846           7 GLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDK----------------------------------MVKK------I   46 (286)
T ss_pred             eeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcc----------------------------------hhhH------H
Confidence            5799999999999999  48999999753211100                                  0011      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|.+-+..+    .+..-+.+..++ ......+++|||++|..+.++... ..+++...+...+.+  ..+..+|..|
T Consensus        47 ~~~e~~~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~~i~~~l~~LH~~~  120 (286)
T cd07846          47 AMREIRMLKQL----RHENLVNLIEVF-RRKKRLYLVFEFVDHTVLDDLEKY-PNGLDESRVRKYLFQILRGIEFCHSHN  120 (286)
T ss_pred             HHHHHHHHHhc----CCcchhhHHHhc-ccCCeEEEEEecCCccHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22233222222    111111122222 223457999999999988876432 223455554444333  3367789999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|++|.||++++  ++.++++|||++..+...... ..     ...+...+++++.... ...+...|++++...+.
T Consensus       121 i~h~~l~p~ni~~~~--~~~~~l~dfg~~~~~~~~~~~-~~-----~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~  192 (286)
T cd07846         121 IIHRDIKPENILVSQ--SGVVKLCDFGFARTLAAPGEV-YT-----DYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVT  192 (286)
T ss_pred             ccccCCCHHHEEECC--CCcEEEEeeeeeeeccCCccc-cC-----cccceeeccCcHHhccccccCchHhHHHHHHHHH
Confidence            999999999999986  889999999999877554321 10     0112344555665532 23445679999987776


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       193 el~  195 (286)
T cd07846         193 EML  195 (286)
T ss_pred             HHH
Confidence            655

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.26  E-value=3.5e-11  Score=126.83  Aligned_cols=185  Identities=16%  Similarity=0.085  Sum_probs=116.5

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      ..+|.|++|.||+|..       ++..|++|....... .                                        
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~-~----------------------------------------   49 (280)
T cd05092          11 WELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE-S----------------------------------------   49 (280)
T ss_pred             cccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCH-H----------------------------------------
Confidence            5799999999999964       356888886521100 0                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh--------------cCCCHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE--------------LGVDRKR  437 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~--------------~g~d~~~  437 (766)
                       ..-+|.+|.+.+.++.     ++++.-..-+.......+++|||++|++|.++.....              ..++...
T Consensus        50 -~~~~~~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~  123 (280)
T cd05092          50 -ARQDFQREAELLTVLQ-----HQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQ  123 (280)
T ss_pred             -HHHHHHHHHHHHhcCC-----CCCCceEEEEEecCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHH
Confidence             0124555555444432     2333222222333456799999999999988653211              1123333


Q ss_pred             HHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004234          438 LGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (766)
Q Consensus       438 la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~  515 (766)
                      +...+.+  ..+..+|..|++|+|++|.||++++  ++.++|.|||++..+.........    ........+++++...
T Consensus       124 ~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~--~~~~kL~dfg~~~~~~~~~~~~~~----~~~~~~~~y~aPE~~~  197 (280)
T cd05092         124 MLAIASQIASGMVYLASLHFVHRDLATRNCLVGQ--GLVVKIGDFGMSRDIYSTDYYRVG----GRTMLPIRWMPPESIL  197 (280)
T ss_pred             HHHHHHHHHHHHHHHHHCCeecccccHhhEEEcC--CCCEEECCCCceeEcCCCceeecC----CCccccccccCHHHhc
Confidence            3333222  2367789999999999999999986  889999999998766432211110    1111234577788776


Q ss_pred             cCCCCCCCCHHHHHHHHHHHH
Q 004234          516 MGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       516 lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      .+..+...|++++...+.+++
T Consensus       198 ~~~~~~~~Di~slG~il~el~  218 (280)
T cd05092         198 YRKFTTESDIWSFGVVLWEIF  218 (280)
T ss_pred             cCCcCchhhHHHHHHHHHHHH
Confidence            666777889999987766654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.26  E-value=5.2e-11  Score=128.81  Aligned_cols=191  Identities=16%  Similarity=0.106  Sum_probs=115.3

Q ss_pred             ccccc--ceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          300 PIAAA--SLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       300 PIgsa--SiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      -||.|  +++.||+++.  +|+.||||..+.....                                  ++....+.   
T Consensus         5 ~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~----------------------------------~~~~~~~~---   47 (327)
T cd08227           5 VIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACT----------------------------------NEMVTFLQ---   47 (327)
T ss_pred             hccccccceEEEEEEeecccCcEEEEEEechhhcc----------------------------------HHHHHHHH---
Confidence            47777  8899999998  6999999987322110                                  11111122   


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                         .|...+..+     ++++|.-..-+....+..++||||++|+++.++.... ..+++...+...+.+  ..+..+|.
T Consensus        48 ---~e~~~l~~l-----~hpniv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~  119 (327)
T cd08227          48 ---GELHVSKLF-----NHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHH  119 (327)
T ss_pred             ---HHHHHHHhc-----CCCCeeeEEEEEEECCEEEEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence               233323222     2233322222333456789999999999999875322 223455444444333  34788899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChh-hHHHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCCHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN-IREGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVR  529 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~-~r~~l~~l~~a~~~~D~~~v~~~l~~lG--~~~~~~D~~~l~  529 (766)
                      .|++|+|+||.||+++.  ++.+++.|||....+... .......-+.....+...++++++...+  ..+...|++++.
T Consensus       120 ~~iiH~dlkp~Nil~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG  197 (327)
T cd08227         120 MGYVHRSVKASHILISV--DGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVG  197 (327)
T ss_pred             CCEecCCCChhhEEEec--CCcEEEcccchhhccccccccccccccccccccceecccChHHhhcccCCCCchhhHHHHH
Confidence            99999999999999986  789999999876544221 1110000000111233456777777543  345678999998


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       198 ~il~el~~  205 (327)
T cd08227         198 ITACELAN  205 (327)
T ss_pred             HHHHHHHH
Confidence            87766653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.26  E-value=6.7e-11  Score=121.59  Aligned_cols=182  Identities=13%  Similarity=0.094  Sum_probs=116.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.++.|++|.||++..  +|+.++||.........                                  .      ....
T Consensus         6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~------~~~~   45 (256)
T cd08530           6 KKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQ----------------------------------K------ERED   45 (256)
T ss_pred             eeecCCCceeEEEEEECCCCCEEEEEEEehhhccH----------------------------------H------HHHH
Confidence            5799999999999988  58999999874321100                                  0      0011


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhh---hcCCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~---~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      +..|...+..+    .+ +++ .+...+ ......++||||++|.+|.++....   ....+...+...+.+  ..+..+
T Consensus        46 ~~~e~~~l~~l----~~-~~i~~~~~~~-~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~l  119 (256)
T cd08530          46 AVNEIRILASV----NH-PNIISYKEAF-LDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQAL  119 (256)
T ss_pred             HHHHHHHHHhC----CC-CCchhhhhhh-ccCCEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            22233322222    11 221 122222 2235679999999999998864321   123444444343322  336788


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|++|.||++++  ++.++++|||++..+......        ...++..++.++.......++..|++++..
T Consensus       120 h~~~i~h~~l~~~ni~~~~--~~~~kl~d~g~~~~~~~~~~~--------~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~  189 (256)
T cd08530         120 HEQKILHRDLKSANILLVA--NDLVKIGDLGISKVLKKNMAK--------TQIGTPHYMAPEVWKGRPYSYKSDIWSLGC  189 (256)
T ss_pred             hhCCcccCCCCcceEEEec--CCcEEEeeccchhhhccCCcc--------cccCCccccCHHHHCCCCCCchhhHHHHHH
Confidence            9999999999999999986  789999999998877654111        123456677788876666667789999887


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       190 ~~~~l~  195 (256)
T cd08530         190 LLYEMA  195 (256)
T ss_pred             HHHHHH
Confidence            766554

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.26  E-value=1.4e-11  Score=139.43  Aligned_cols=184  Identities=17%  Similarity=0.161  Sum_probs=128.1

Q ss_pred             ccccccceeEEEEEee--c-C---eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--K-G---EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~-G---~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +-+|+|.||.||+|++  . +   .+||||..+-.-                                       ...-.
T Consensus       163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~---------------------------------------~~~~~  203 (474)
T KOG0194|consen  163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSS---------------------------------------ELTKE  203 (474)
T ss_pred             ceeecccccEEEEEEEEecCCceeeeeEEEeecccc---------------------------------------cccHH
Confidence            6799999999999999  2 3   238999663200                                       00011


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      +-.+|.+||+-|..|     ++++|.--.-+.....+.+||||+|+|++|.+...-....++..+.......  ..+.++
T Consensus       204 ~~~e~m~EArvMr~l-----~H~NVVr~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YL  278 (474)
T KOG0194|consen  204 QIKEFMKEARVMRQL-----NHPNVVRFYGVAVLEEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYL  278 (474)
T ss_pred             HHHHHHHHHHHHHhC-----CCCCEEEEEEEEcCCCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHH
Confidence            234788999988775     3344433333335667889999999999999976543333555554444443  458889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG-LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~-l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      |..+++|||+-..|+|+..  ++.+++.||||+..-+...... ..       .=-..+++|+.++.|..++.+|++++.
T Consensus       279 h~k~~IHRDIAARNcL~~~--~~~vKISDFGLs~~~~~~~~~~~~~-------klPirWLAPEtl~~~~~s~kTDV~sfG  349 (474)
T KOG0194|consen  279 HSKNCIHRDIAARNCLYSK--KGVVKISDFGLSRAGSQYVMKKFLK-------KLPIRWLAPETLNTGIFSFKTDVWSFG  349 (474)
T ss_pred             HHCCCcchhHhHHHheecC--CCeEEeCccccccCCcceeeccccc-------cCcceecChhhhccCccccccchhhee
Confidence            9999999999999999985  6678999999977654211111 11       224677889999999999999999887


Q ss_pred             HHHHHH
Q 004234          530 RTAQFF  535 (766)
Q Consensus       530 ~~i~~~  535 (766)
                      ..+.++
T Consensus       350 V~~~Ei  355 (474)
T KOG0194|consen  350 VLLWEI  355 (474)
T ss_pred             eeEEee
Confidence            655443

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.25  E-value=5.4e-11  Score=119.78  Aligned_cols=176  Identities=20%  Similarity=0.203  Sum_probs=114.8

Q ss_pred             ceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 004234          305 SLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA  382 (766)
Q Consensus       305 SiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~  382 (766)
                      ++|+||+|+.  +|+.|++|+.+.+....-                                         .-++..|++
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-----------------------------------------~~~~~~e~~   39 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKK-----------------------------------------RERILREIS   39 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccH-----------------------------------------HHHHHHHHH
Confidence            5899999999  489999999855432110                                         113344444


Q ss_pred             HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCC
Q 004234          383 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADP  460 (766)
Q Consensus       383 Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~GffHaDp  460 (766)
                      .+.++     .++++.-+.-+.......+++|||+++.+|.++..... ..+...+...+.+  ..+..+|..|++|+|+
T Consensus        40 ~~~~l-----~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i  113 (244)
T smart00220       40 ILKKL-----KHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKKRG-RLSEDEARFYARQILSALEYLHSNGIIHRDL  113 (244)
T ss_pred             HHHhC-----CCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHcCeecCCc
Confidence            44433     11222111111112356899999999999988654322 1444444444333  3467889999999999


Q ss_pred             CCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          461 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       461 HPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +|.||+++.  ++.++++|||.+..+.....       .....+.+.++.++....+..++..|++++...+..++
T Consensus       114 ~~~ni~~~~--~~~~~l~d~~~~~~~~~~~~-------~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~  180 (244)
T smart00220      114 KPENILLDE--DGHVKLADFGLARQLDPGGL-------LTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELL  180 (244)
T ss_pred             CHHHeEECC--CCcEEEccccceeeeccccc-------cccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHH
Confidence            999999986  78999999999998876431       11123455677777777666777889999887665544

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.25  E-value=6.8e-12  Score=144.83  Aligned_cols=213  Identities=17%  Similarity=0.209  Sum_probs=149.5

Q ss_pred             hhhCCCCCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEee--cC---eeEEEEEecCCccchHHHHHHHH
Q 004234          265 LQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KG---EEVVVKVQRPGLKDLFDIDLKNL  339 (766)
Q Consensus       265 Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G---~~VAVKVqrP~i~~~i~~Dl~il  339 (766)
                      ...-+.|+.+++-.+.+. ||-+.++--+-.++ +.||+|.||.||+|+|  .|   ..||||.++-|..+.        
T Consensus       603 ~k~YiDP~TYEDPnqAvr-eFakEId~s~i~Ie-~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gytek--------  672 (996)
T KOG0196|consen  603 TKTYIDPHTYEDPNQAVR-EFAKEIDPSCVKIE-KVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEK--------  672 (996)
T ss_pred             ceeecCCccccCccHHHH-HhhhhcChhheEEE-EEEecccccceecccccCCCCcceeEEEeeeccCccHH--------
Confidence            556677888887666554 34433333222333 5899999999999999  34   579999987665433        


Q ss_pred             HHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCC
Q 004234          340 RVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPG  419 (766)
Q Consensus       340 ~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG  419 (766)
                                                       +..||+.||..|-+|     ++|+|.--.-+---+...++++|||+.
T Consensus       673 ---------------------------------qrrdFL~EAsIMGQF-----dHPNIIrLEGVVTks~PvMIiTEyMEN  714 (996)
T KOG0196|consen  673 ---------------------------------QRRDFLSEASIMGQF-----DHPNIIRLEGVVTKSKPVMIITEYMEN  714 (996)
T ss_pred             ---------------------------------HHhhhhhhhhhcccC-----CCCcEEEEEEEEecCceeEEEhhhhhC
Confidence                                             345899999988776     445544333333346677999999999


Q ss_pred             CChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHH
Q 004234          420 IKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA  497 (766)
Q Consensus       420 ~~L~d~~~l~~~g~d~~~la~~--lv~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l  497 (766)
                      ++|+.+.......+..-++...  ++.+.++.+-..|++|||+-..||||+.  +-..++.|||+.+.+.++.-..+...
T Consensus       715 GsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNs--nLvCKVsDFGLSRvledd~~~~ytt~  792 (996)
T KOG0196|consen  715 GSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNS--NLVCKVSDFGLSRVLEDDPEAAYTTL  792 (996)
T ss_pred             CcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeecc--ceEEEeccccceeecccCCCcccccc
Confidence            9999987665555655555544  5777789999999999999999999985  66889999999998866542222111


Q ss_pred             HHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          498 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       498 ~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                        + -+=-...-+++.+.....+...|++++.-
T Consensus       793 --G-GKIPiRWTAPEAIa~RKFTsASDVWSyGI  822 (996)
T KOG0196|consen  793 --G-GKIPIRWTAPEAIAYRKFTSASDVWSYGI  822 (996)
T ss_pred             --C-CccceeecChhHhhhcccCchhhccccce
Confidence              0 00113455677777777788888887764

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.25  E-value=5.6e-11  Score=128.97  Aligned_cols=186  Identities=16%  Similarity=0.097  Sum_probs=114.1

Q ss_pred             ccccccceeEEEEEeec---------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~---------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      ++||.|++|+||+|+..         +..||+|+.+......                                   .. 
T Consensus        18 ~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~-   61 (334)
T cd05100          18 KPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDK-----------------------------------DL-   61 (334)
T ss_pred             ceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHH-----------------------------------HH-
Confidence            68999999999999851         2368999764221110                                   00 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccc-cceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCC
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYVK-VPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGV  433 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~-vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~  433 (766)
                           -++.+|...+.++.    .++++. +...+ ......+++|||++|++|.++.....               ..+
T Consensus        62 -----~~~~~E~~~l~~l~----~h~~iv~~~~~~-~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l  131 (334)
T cd05100          62 -----SDLVSEMEMMKMIG----KHKNIINLLGAC-TQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQL  131 (334)
T ss_pred             -----HHHHHHHHHHHhhc----CCCCeeeeeEEE-ccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccC
Confidence                 12344444444432    223322 22222 23456799999999999988653211               112


Q ss_pred             CHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHH
Q 004234          434 DRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ  511 (766)
Q Consensus       434 d~~~la~~l--v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~  511 (766)
                      +...+...+  +-..+..+|..|++|+|++|.||+++.  ++.++|+|||.+..+.........    ........++++
T Consensus       132 ~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~~~~----~~~~~~~~y~aP  205 (334)
T cd05100         132 TFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTE--DNVMKIADFGLARDVHNIDYYKKT----TNGRLPVKWMAP  205 (334)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcC--CCcEEECCcccceecccccccccc----cCCCcCceEcCH
Confidence            223322222  223367889999999999999999986  789999999998876542211000    001112346777


Q ss_pred             HHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          512 AMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       512 ~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +....+..+...|++++...+.+++
T Consensus       206 E~~~~~~~~~~~Di~slG~il~el~  230 (334)
T cd05100         206 EALFDRVYTHQSDVWSFGVLLWEIF  230 (334)
T ss_pred             HHhccCCcCchhhhHHHHHHHHHHH
Confidence            7776666677789999987766554

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.25  E-value=3.5e-11  Score=131.59  Aligned_cols=190  Identities=19%  Similarity=0.197  Sum_probs=115.0

Q ss_pred             hhhhhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004234          289 LDDVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (766)
Q Consensus       289 ~eeiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (766)
                      +.++-+.|+. ++||+|++|.||+|..  +|+.||||+........                                  
T Consensus        12 ~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------   57 (345)
T cd07877          12 IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSI----------------------------------   57 (345)
T ss_pred             HhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhh----------------------------------
Confidence            3333344433 7899999999999997  59999999874321110                                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee-----ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHH
Q 004234          366 ECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGR  440 (766)
Q Consensus       366 E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~-----e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~  440 (766)
                            ..+-.+.+|...+.++.    +..-+.+..++.     +.....+++|+++ |..|.++....  .++...+..
T Consensus        58 ------~~~~~~~~Ei~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~~lv~~~~-~~~L~~~~~~~--~l~~~~~~~  124 (345)
T cd07877          58 ------IHAKRTYRELRLLKHMK----HENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKCQ--KLTDDHVQF  124 (345)
T ss_pred             ------HHHHHHHHHHHHHHHcC----CCcccceeeeeeecccccccccEEEEehhc-ccCHHHHHhcC--CCCHHHHHH
Confidence                  00112334555555442    211122222221     1123467888887 66777754322  234333333


Q ss_pred             HHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-C
Q 004234          441 YAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-G  517 (766)
Q Consensus       441 ~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G  517 (766)
                      .+.+  ..+..+|..|++|+|++|.||+++.  ++.++++|||++.........         ..+...+++++.... .
T Consensus       125 i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~--~~~~kl~dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~~~  193 (345)
T cd07877         125 LIYQILRGLKYIHSADIIHRDLKPSNLAVNE--DCELKILDFGLARHTDDEMTG---------YVATRWYRAPEIMLNWM  193 (345)
T ss_pred             HHHHHHHHHHHHHHCCeeecCCChHHEEEcC--CCCEEEecccccccccccccc---------cccCCCccCHHHHhCcc
Confidence            2222  3367889999999999999999986  889999999998876443211         122334556665543 3


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q 004234          518 VLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       518 ~~~~~~D~~~l~~~i~~~l  536 (766)
                      ..++..|++++...+.+++
T Consensus       194 ~~~~~~DvwslG~il~el~  212 (345)
T cd07877         194 HYNQTVDIWSVGCIMAELL  212 (345)
T ss_pred             CCCchhhHHHHHHHHHHHH
Confidence            3456789999987776654

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.25  E-value=7e-11  Score=125.13  Aligned_cols=186  Identities=16%  Similarity=0.134  Sum_probs=111.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|..  +|+.||||..+......                                  +      ..-.
T Consensus         8 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~----------------------------------~------~~~~   47 (294)
T PLN00009          8 EKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDE----------------------------------G------VPST   47 (294)
T ss_pred             EEecCCCCEEEEEEEecCCCcEEEEEehhhccccc----------------------------------c------chHH
Confidence            5799999999999998  58999999763211000                                  0      0012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYA--VESYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~l--v~~~l~qI~~~  453 (766)
                      +.+|++.+.++.    + +++.-..-+.......++||||+++ .+.+.... .....+...+...+  +-..+..+|..
T Consensus        48 ~~~e~~~l~~l~----h-~~i~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~  121 (294)
T PLN00009         48 AIREISLLKEMQ----H-GNIVRLQDVVHSEKRLYLVFEYLDL-DLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSH  121 (294)
T ss_pred             HHHHHHHHHhcc----C-CCEeeEEEEEecCCeEEEEEecccc-cHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence            344554444442    2 3322222222334568999999976 55554321 11112333322222  22346888999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i  532 (766)
                      |++|+|++|.||+++. .++.++++|||++..+...... +     ....+...++.++.... .......|++++...+
T Consensus       122 ~i~H~dl~p~nill~~-~~~~~kl~dfg~~~~~~~~~~~-~-----~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~  194 (294)
T PLN00009        122 RVLHRDLKPQNLLIDR-RTNALKLADFGLARAFGIPVRT-F-----THEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIF  194 (294)
T ss_pred             CeeCCCCCcceEEEEC-CCCEEEEcccccccccCCCccc-c-----ccCceeecccCHHHHhCCCCCCcHHHHHHHHHHH
Confidence            9999999999999984 3567999999999765432111 0     00112345666776644 3346678999998777


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       195 ~~l~t  199 (294)
T PLN00009        195 AEMVN  199 (294)
T ss_pred             HHHHh
Confidence            66553

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.25  E-value=5.5e-11  Score=129.76  Aligned_cols=199  Identities=21%  Similarity=0.223  Sum_probs=117.3

Q ss_pred             HhCCChhhhhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccch
Q 004234          284 ELGAPLDDVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW  360 (766)
Q Consensus       284 elG~~~eeiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~  360 (766)
                      +.++...++...|.. .+||+|++|+||+|+.  +|+.||||+........                             
T Consensus         5 ~~~~~~~~~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~-----------------------------   55 (343)
T cd07851           5 ELNKTVWEVPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSA-----------------------------   55 (343)
T ss_pred             hhccceecccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchh-----------------------------
Confidence            334444444444543 7899999999999999  58999999874321110                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHH
Q 004234          361 VAIYDECASVLYQEIDYTQEA--ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRL  438 (766)
Q Consensus       361 ~~i~~E~~~~l~~ElDf~~EA--~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~l  438 (766)
                           +....+.+|++.....  .|+..+...+...       -........++||||+ |.+|.++...  ..++...+
T Consensus        56 -----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-------~~~~~~~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~  120 (343)
T cd07851          56 -----IHAKRTYRELRLLKHMDHENVIGLLDVFTPA-------SSLEDFQDVYLVTHLM-GADLNNIVKC--QKLSDDHI  120 (343)
T ss_pred             -----hHHHHHHHHHHHHHhccCCCHHHHHHHhhcc-------ccccccccEEEEEecC-CCCHHHHHhc--CCCCHHHH
Confidence                 0001111222222111  1222222211110       0001223479999998 5577776432  23444443


Q ss_pred             HHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004234          439 GRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (766)
Q Consensus       439 a~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l  516 (766)
                      ...+.+  ..+..+|..|++|+|++|.||+++.  ++.++|+|||++..+......         ......+++++....
T Consensus       121 ~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~--~~~~kL~dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~  189 (343)
T cd07851         121 QFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNE--DCELKILDFGLARHTDDEMTG---------YVATRWYRAPEIMLN  189 (343)
T ss_pred             HHHHHHHHHHHHHHHHCCeecCCCCHHHeEECC--CCCEEEccccccccccccccC---------CcccccccCHHHHhC
Confidence            333322  3467889999999999999999986  889999999999877543211         122344566766543


Q ss_pred             C-CCCCCCCHHHHHHHHHHHHH
Q 004234          517 G-VLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       517 G-~~~~~~D~~~l~~~i~~~l~  537 (766)
                      + ..+...|++++...+.+++.
T Consensus       190 ~~~~~~~~DvwslGv~l~ellt  211 (343)
T cd07851         190 WMHYNQTVDIWSVGCIMAELLT  211 (343)
T ss_pred             CCCCCchHhHHHHHHHHHHHHh
Confidence            2 34567899999877766553

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.24  E-value=7.4e-11  Score=123.43  Aligned_cols=182  Identities=19%  Similarity=0.242  Sum_probs=112.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|.|++|+||+|+.  +|+.||||+.+......                                         .+.+
T Consensus         5 ~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~-----------------------------------------~~~~   43 (282)
T cd07831           5 GKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSL-----------------------------------------EQVN   43 (282)
T ss_pred             eeccccccceEEEEEEcCCCcEEEEEEehhccCCc-----------------------------------------hhhh
Confidence            4689999999999998  68999999864322110                                         0011


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      ...|...+.++.    ++++ +.+...+.+- .+..+++|||++| ++.+........++...+...+.+  ..+..+|.
T Consensus        44 ~~~e~~~l~~l~----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~  118 (282)
T cd07831          44 NLREIQALRRLS----PHPNILRLIEVLFDRKTGRLALVFELMDM-NLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHR  118 (282)
T ss_pred             HHHHHHHHhhcC----CCCCccceEEEEecCCCCcEEEEEecCCc-cHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            122333333332    2232 2333333321 1567999999987 444433222223454444444433  34788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRT  531 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~  531 (766)
                      .|++|+|++|.||+++.   +.++++|||++..+.......       ...+...+++++.... +..+...|++++...
T Consensus       119 ~~i~H~dl~p~ni~l~~---~~~kl~dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~  188 (282)
T cd07831         119 NGIFHRDIKPENILIKD---DILKLADFGSCRGIYSKPPYT-------EYISTRWYRAPECLLTDGYYGPKMDIWAVGCV  188 (282)
T ss_pred             CCceecccCHHHEEEcC---CCeEEEecccccccccCCCcC-------CCCCCcccCChhHhhcCCCCCcchhHHHHHHH
Confidence            99999999999999973   899999999998764322110       0113445666775433 455677899999877


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       189 l~el~  193 (282)
T cd07831         189 FFEIL  193 (282)
T ss_pred             HHHHH
Confidence            66654

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.24  E-value=1.1e-10  Score=117.02  Aligned_cols=185  Identities=19%  Similarity=0.172  Sum_probs=115.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++|++|++|+||++..  +++.|++|+.+.....                                         ...-+
T Consensus         5 ~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~-----------------------------------------~~~~~   43 (225)
T smart00221        5 KKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE-----------------------------------------KQREE   43 (225)
T ss_pred             eEeecCCCeEEEEEEEcCCCcEEEEEeeccccch-----------------------------------------HHHHH
Confidence            6899999999999999  3799999987543211                                         00113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|+..+.++     .++++.....+....+..+++|||++|.+|.++........+...+...+.+  ..+..+|..|
T Consensus        44 ~~~e~~~~~~~-----~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~  118 (225)
T smart00221       44 FLREIRILKKL-----KHPNIVKLYGVFEDPEPLYLVMEYCEGGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSLG  118 (225)
T ss_pred             HHHHHHHHHhC-----CCCChhhheeeeecCCceEEEEeccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            44455444444     1222222222223346789999999999998875432211344443333322  2367788999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH-HcCCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV-QMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~-~lG~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|++|.||+++.  ++.++++|||....+.......     .........++.+++. .....+...|++++...+.
T Consensus       119 i~h~di~~~ni~v~~--~~~~~l~d~g~~~~~~~~~~~~-----~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~  191 (225)
T smart00221      119 IVHRDLKPENILLGM--DGLVKLADFGLARFIHRDLAAL-----LKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILY  191 (225)
T ss_pred             eecCCCCHHHEEEcC--CCCEEEeeCceeeEecCccccc-----ccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHH
Confidence            999999999999986  6899999999998876543000     0001123345555555 3344455678888876555


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       192 ~l~  194 (225)
T smart00221      192 ELL  194 (225)
T ss_pred             HHH
Confidence            443

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.24  E-value=4.1e-11  Score=127.05  Aligned_cols=186  Identities=16%  Similarity=0.137  Sum_probs=111.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|.|++|+||+|+.  +|+.||||+.+......                                  .      .+.+
T Consensus        13 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~----------------------------------~------~~~~   52 (302)
T cd07864          13 GQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKE----------------------------------G------FPIT   52 (302)
T ss_pred             eeecccCCEEEEEEEECCCCcEEEEEEEeeccccc----------------------------------C------chHH
Confidence            6799999999999999  58999999875432111                                  0      0112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec---------cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--H
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWE---------YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--S  445 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e---------~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~  445 (766)
                      +.+|...+.++.    +..-+.+..++.+         ..+..+|+|||++| .+.+........++...+...+.+  .
T Consensus        53 ~~~e~~~~~~l~----h~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~  127 (302)
T cd07864          53 AIREIKILRQLN----HRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLE  127 (302)
T ss_pred             HHHHHHHHHhCC----CCCeeeeeheecCcchhhhccccCCcEEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            233443333331    1111111111111         12357899999998 444432222223454444443333  2


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCC
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGD  524 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D  524 (766)
                      .+..+|..|++|+|++|+||++++  ++.++++|||.+..+.......+..     ......++++++... ...++..|
T Consensus       128 aL~~LH~~~i~H~dl~p~nili~~--~~~~kl~dfg~~~~~~~~~~~~~~~-----~~~~~~y~~PE~~~~~~~~~~~~D  200 (302)
T cd07864         128 GLNYCHKKNFLHRDIKCSNILLNN--KGQIKLADFGLARLYNSEESRPYTN-----KVITLWYRPPELLLGEERYGPAID  200 (302)
T ss_pred             HHHHHHhCCeecCCCCHHHEEECC--CCcEEeCcccccccccCCccccccc-----ceeccCccChHHhcCCCCCCchhH
Confidence            367889999999999999999985  8899999999998775433211100     011334555665543 23466789


Q ss_pred             HHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFL  536 (766)
Q Consensus       525 ~~~l~~~i~~~l  536 (766)
                      ++++...+.+++
T Consensus       201 i~slG~~~~el~  212 (302)
T cd07864         201 VWSCGCILGELF  212 (302)
T ss_pred             HHHHHHHHHHHH
Confidence            999887766554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.24  E-value=5.3e-11  Score=142.13  Aligned_cols=143  Identities=21%  Similarity=0.275  Sum_probs=92.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|..  +|+.||||+.+..-...                                 .....      .
T Consensus        10 ~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~---------------------------------~~~~~------~   50 (669)
T cd05610          10 KPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMIN---------------------------------KNMVH------Q   50 (669)
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEehhhccC---------------------------------HHHHH------H
Confidence            6899999999999999  49999999874321000                                 00111      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +..|...+..+    . ++++.-...........+|||||++|++|.++.... ..++...+...+  +-..+..+|..|
T Consensus        51 ~~~E~~~l~~l----~-hp~Iv~~~~~~~~~~~~~lVmEy~~g~~L~~li~~~-~~l~~~~~~~i~~qil~aL~yLH~~g  124 (669)
T cd05610          51 VQAERDALALS----K-SPFIVHLYYSLQSANNVYLVMEYLIGGDVKSLLHIY-GYFDEEMAVKYISEVALALDYLHRHG  124 (669)
T ss_pred             HHHHHHHHHhc----C-CCCcCeEEEEEEECCEEEEEEeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            22333333222    1 233222222223345689999999999999875321 122333222222  223478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (766)
                      ++|+|+||.|||++.  ++.++|+|||++.....
T Consensus       125 IiHrDLKP~NILl~~--~g~vkL~DFGls~~~~~  156 (669)
T cd05610         125 IIHRDLKPDNMLISN--EGHIKLTDFGLSKVTLN  156 (669)
T ss_pred             EEeCCccHHHEEEcC--CCCEEEEeCCCCccccC
Confidence            999999999999985  89999999999986543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.24  E-value=5.5e-11  Score=127.19  Aligned_cols=186  Identities=17%  Similarity=0.111  Sum_probs=114.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|..  +|+.||+|+.+......                           .             ....
T Consensus        13 ~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~---------------------------~-------------~~~~   52 (309)
T cd07845          13 NRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERD---------------------------G-------------IPIS   52 (309)
T ss_pred             eeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCC---------------------------C-------------Ccch
Confidence            5799999999999998  59999999874321110                           0             0011


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC-CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT-TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s-t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|+..+.++    .+..-+.+..++.+-. +..++||||+++ ++.++.......++...+...+.+  ..+..+|..
T Consensus        53 ~~~E~~~l~~l----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~  127 (309)
T cd07845          53 SLREITLLLNL----RHPNIVELKEVVVGKHLDSIFLVMEYCEQ-DLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHEN  127 (309)
T ss_pred             hhHHHHHHHhC----CCCCCcceEEEEecCCCCeEEEEEecCCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            22344434333    2322233444443222 457999999987 566654322223344443333322  347789999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i  532 (766)
                      |++|+|++|+||+++.  ++.++|+|||++..+....... .     -......+++++...- ...+...|++++...+
T Consensus       128 ~i~H~dl~p~nil~~~--~~~~kL~dfg~~~~~~~~~~~~-~-----~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il  199 (309)
T cd07845         128 FIIHRDLKVSNLLLTD--KGCLKIADFGLARTYGLPAKPM-T-----PKVVTLWYRAPELLLGCTTYTTAIDMWAVGCIL  199 (309)
T ss_pred             CeecCCCCHHHEEECC--CCCEEECccceeeecCCccCCC-C-----cccccccccChhhhcCCCCcCchHHHHHHHHHH
Confidence            9999999999999986  8899999999998775432110 0     0011334566666542 3345678999998877


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       200 ~el~~  204 (309)
T cd07845         200 AELLA  204 (309)
T ss_pred             HHHHh
Confidence            66653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.23  E-value=2.1e-11  Score=128.13  Aligned_cols=185  Identities=17%  Similarity=0.168  Sum_probs=111.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||+|++|+||+|+.  +|+.||||..+......                                  +.      +-.
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~------~~~   45 (284)
T cd07860           6 EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE----------------------------------GV------PST   45 (284)
T ss_pred             eeecCCCceEEEEEEECCCCCEEEEEEcccccccc----------------------------------cc------chH
Confidence            6799999999999998  58999999774321100                                  00      012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|++.+.++.    +..-+.+...+ ......+++|||+++ ++.+.... ....++...+...+.+  ..+..+|..
T Consensus        46 ~~~E~~~l~~l~----h~~i~~~~~~~-~~~~~~~~v~e~~~~-~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~  119 (284)
T cd07860          46 AIREISLLKELN----HPNIVKLLDVI-HTENKLYLVFEFLHQ-DLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSH  119 (284)
T ss_pred             HHHHHHHHHhcC----CCCCcchhhhc-ccCCcEEEEeecccc-CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            334444444432    21112222222 234567999999975 66664432 2233454444444333  336788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i  532 (766)
                      |++|+|++|+||+++.  ++.++++|||.+..+.........      ......++++++... ...+...|++++...+
T Consensus       120 ~i~H~~l~p~nill~~--~~~~~l~dfg~~~~~~~~~~~~~~------~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il  191 (284)
T cd07860         120 RVLHRDLKPQNLLINT--EGAIKLADFGLARAFGVPVRTYTH------EVVTLWYRAPEILLGCKYYSTAVDIWSLGCIF  191 (284)
T ss_pred             CeecCCCCHHHEEECC--CCCEEEeeccchhhcccCcccccc------ccccccccCCeEEecCCCCCcHHHHHHHHHHH
Confidence            9999999999999986  889999999998766433221100      012334555554432 2235567999988777


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       192 ~~l~t  196 (284)
T cd07860         192 AEMVT  196 (284)
T ss_pred             HHHHH
Confidence            66553

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.23  E-value=5.7e-11  Score=126.05  Aligned_cols=190  Identities=16%  Similarity=0.127  Sum_probs=113.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..||.|++|+||+|..  +|+.||||+........                           .       +      ...
T Consensus        18 ~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~---------------------------~-------~------~~~   57 (310)
T cd07865          18 AKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKE---------------------------G-------F------PIT   57 (310)
T ss_pred             EEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcC---------------------------C-------c------hhH
Confidence            6899999999999998  58999999763221100                           0       0      011


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee-------ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW-------EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~-------e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l  447 (766)
                      +.+|.+.+.++.    +..-+.+..++.       ...+..++||||+.+ .+.+........++...+...+.+  ..+
T Consensus        58 ~~~e~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~al  132 (310)
T cd07865          58 ALREIKILQLLK----HENVVNLIEICRTKATPYNRYKGSFYLVFEFCEH-DLAGLLSNKNVKFTLSEIKKVMKMLLNGL  132 (310)
T ss_pred             HHHHHHHHHhCC----CCCccceEEEEecccccccCCCceEEEEEcCCCc-CHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence            223444344332    222222222221       123446999999987 555543222223455444444333  347


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCCHH
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTT  526 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~-~~~~~D~~  526 (766)
                      ..+|.+|++|+|++|.||+++.  ++.++++|||++..+....... ... .........++++++...+. ..+..|++
T Consensus       133 ~~lH~~~i~H~dl~p~nil~~~--~~~~kl~dfg~~~~~~~~~~~~-~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~Di~  208 (310)
T cd07865         133 YYIHRNKILHRDMKAANILITK--DGILKLADFGLARAFSLSKNSK-PNR-YTNRVVTLWYRPPELLLGERDYGPPIDMW  208 (310)
T ss_pred             HHHHHCCeeccCCCHHHEEECC--CCcEEECcCCCcccccCCcccC-CCC-ccCcccCccccCcHHhcCCcccCchhhhH
Confidence            8899999999999999999985  8899999999998775433211 000 00011234456677654332 35678999


Q ss_pred             HHHHHHHHHHH
Q 004234          527 AVRRTAQFFLN  537 (766)
Q Consensus       527 ~l~~~i~~~l~  537 (766)
                      ++...+.+++.
T Consensus       209 slG~~l~el~t  219 (310)
T cd07865         209 GAGCIMAEMWT  219 (310)
T ss_pred             HHHHHHHHHHh
Confidence            99887766643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=99.23  E-value=4.2e-10  Score=117.31  Aligned_cols=184  Identities=21%  Similarity=0.210  Sum_probs=125.4

Q ss_pred             cccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       300 PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +|.+|--|.||+|.. ++..|||||.+....+--..        -.+++. .|.+...+.+...++..+         -+
T Consensus        55 ~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~--------~~Yi~g-d~Rf~~~~~~rr~lv~~W---------~~  116 (268)
T COG1718          55 CISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRI--------RRYIQG-DPRFRNSRSNRRKLVFAW---------AR  116 (268)
T ss_pred             eecCCcceEEEeeccCCCceEEEEEEehhhhhhhhH--------HHHHhc-ChhhhcCCCCHHHHHHHH---------HH
Confidence            899999999999998 79999999998766543221        222211 122222233444443333         25


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCC---CHHHHHHHHHHHHHHHHHhCCc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV---DRKRLGRYAVESYLEQILSHGF  455 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~---d~~~la~~lv~~~l~qI~~~Gf  455 (766)
                      .|-+|+.+..+     .+|.+|+++.  .-++||+|||+.... .-.-.+...+.   +...+...+++.+-.+....|+
T Consensus       117 kEf~NL~R~~e-----AGVrvP~Pi~--~~~nVLvMEfIg~~g-~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~a~L  188 (268)
T COG1718         117 KEFRNLKRAYE-----AGVRVPEPIA--FRNNVLVMEFIGDDG-LPAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEAGL  188 (268)
T ss_pred             HHHHHHHHHHH-----cCCCCCCcee--ecCCeEEEEeccCCC-CCCCCcccCCcCchhHHHHHHHHHHHHHHHHHhcCc
Confidence            68889999876     4699999994  568899999996541 11111222222   2334444455555555567999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  519 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~  519 (766)
                      +|+|+..=|||+.   ++.+.+||||.+..++...-.       .++.+|...+..-+...|+-
T Consensus       189 VHgDLSEyNiL~~---~~~p~iID~~QaV~~~hp~a~-------e~L~RDv~Ni~~fF~r~gv~  242 (268)
T COG1718         189 VHGDLSEYNILVH---DGEPYIIDVSQAVTIDHPNAF-------EFLERDVRNIARFFRRKGVE  242 (268)
T ss_pred             ccccchhhheEEE---CCeEEEEECccccccCCCchH-------HHHHHHHHHHHHHHHHcCCC
Confidence            9999999999997   689999999999988765443       33567999999999888863

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.23  E-value=9.3e-11  Score=122.56  Aligned_cols=185  Identities=19%  Similarity=0.202  Sum_probs=114.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|..  +|+.|++|..++.....                                  ..      .-+
T Consensus         5 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~------~~~   44 (283)
T cd05118           5 GKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESE----------------------------------GI------PKT   44 (283)
T ss_pred             eeeecCCCceEEEEEcCCCCcEEEEEEeccccccc----------------------------------hh------HHH
Confidence            4799999999999998  58999999875432211                                  00      012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~~G  454 (766)
                      +..|...+.++.    +..-+.+...+ ...+..+++|||+++ ++.+........++...+...+.  -..+..+|..|
T Consensus        45 ~~~e~~~l~~l~----~~~i~~~~~~~-~~~~~~~~v~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~  118 (283)
T cd05118          45 ALREIKLLKELN----HPNIIKLLDVF-RHKGDLYLVFEFMDT-DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHG  118 (283)
T ss_pred             HHHHHHHHHHhc----CCCcchHHHhh-ccCCCEEEEEeccCC-CHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            222333333321    11111222222 223667999999987 66654332222344433332222  23367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||.||+++.  ++.++++|||.+..+....+..      .....+..++.+++...+ ..+...|++++...+.
T Consensus       119 i~H~dl~p~nili~~--~~~~~l~df~~~~~~~~~~~~~------~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~  190 (283)
T cd05118         119 ILHRDLKPENLLINT--EGVLKLADFGLARSFGSPVRPY------THYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFA  190 (283)
T ss_pred             eeecCcCHHHEEECC--CCcEEEeeeeeeEecCCCcccc------cCccCcccccCcHHHhcCCCCCchhHHHHHHHHHH
Confidence            999999999999985  7899999999998886654111      011234455666666544 5567789999987766


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       191 ~l~t  194 (283)
T cd05118         191 ELLS  194 (283)
T ss_pred             HHHh
Confidence            6553

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.23  E-value=7.7e-11  Score=122.83  Aligned_cols=194  Identities=12%  Similarity=0.095  Sum_probs=118.6

Q ss_pred             ccccccceeEEEEEee-c--CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-K--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~--G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      +.||.|++|.||+|.+ .  ++.||||..+........                     ... ....   .       .-
T Consensus         6 ~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~---------------------~~~-~~~~---~-------~~   53 (269)
T cd08528           6 EHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGK---------------------DKR-ERDK---S-------IG   53 (269)
T ss_pred             hhhcCCCCceEEEEEEcCCCCceeeeeEeecccccccc---------------------ccc-cchH---H-------HH
Confidence            5799999999999999 3  688999987543221100                     000 0000   0       01


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHHHH--HHHHHH
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l---~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      ++..|..-+.   +.. +++++.-+.-+.......+++|||++|.+|.++...   ....++...+...+.+  ..+..+
T Consensus        54 ~~~~e~~~l~---~~~-~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l  129 (269)
T cd08528          54 DIVSEVTIIK---EQL-RHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYL  129 (269)
T ss_pred             HHHHHHHHHh---hcC-CCCCeeeEEeeEccCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHh
Confidence            2222322221   112 223333222222335678999999999999886421   1222344444433333  235677


Q ss_pred             Hh-CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          451 LS-HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       451 ~~-~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      |. .|++|+|++|.||+++.  ++.++++|||++........       .....+...++.+++...+..++..|++++.
T Consensus       130 h~~~~i~H~dl~~~nil~~~--~~~~~l~dfg~~~~~~~~~~-------~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG  200 (269)
T cd08528         130 HKEKRIVHRDLTPNNIMLGE--DDKVTITDFGLAKQKQPESK-------LTSVVGTILYSCPEIVKNEPYGEKADVWAFG  200 (269)
T ss_pred             ccCCceeecCCCHHHEEECC--CCcEEEecccceeecccccc-------cccccCcccCcChhhhcCCCCchHHHHHHHH
Confidence            74 68999999999999986  88999999999988765431       1112345556777777767777788999998


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       201 ~ll~~l~~  208 (269)
T cd08528         201 CILYQMCT  208 (269)
T ss_pred             HHHHHHHh
Confidence            77666543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.22  E-value=1.1e-10  Score=142.15  Aligned_cols=188  Identities=12%  Similarity=0.014  Sum_probs=118.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..||.|+||.||+|+.  .++.||+|+........                                  ...      -.
T Consensus        19 ~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e----------------------------------~~~------~~   58 (1021)
T PTZ00266         19 KKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKE----------------------------------REK------SQ   58 (1021)
T ss_pred             EEEecCCCeEEEEEEECCCCeEEEEEEEeccccCH----------------------------------HHH------HH
Confidence            6899999999999999  58899999874321100                                  001      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhh---hcCCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~---~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      |..|+..+..+.    +..-|.+...+... ....+|||||++|++|.++....   ...++...+...+.+  ..|..+
T Consensus        59 ~~~EI~IL~~L~----HPNIVrl~d~f~de~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYL  134 (1021)
T PTZ00266         59 LVIEVNVMRELK----HKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYC  134 (1021)
T ss_pred             HHHHHHHHHHcC----CCCcCeEEEEEEecCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            334554444442    22222222322221 23468999999999999865321   122444444443333  236667


Q ss_pred             Hh-------CCccccCCCCCcEEEeec---------------CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHH
Q 004234          451 LS-------HGFFHADPHPGNIAVDDV---------------NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADK  508 (766)
Q Consensus       451 ~~-------~GffHaDpHPGNILV~~~---------------~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~  508 (766)
                      |.       .+|+|+|+||.|||+...               ..+.++|+|||++..+......       ....+++.+
T Consensus       135 Hs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~-------~s~vGTp~Y  207 (1021)
T PTZ00266        135 HNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESMA-------HSCVGTPYY  207 (1021)
T ss_pred             HhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccccccc-------cccCCCccc
Confidence            76       359999999999999631               1235899999999876543211       123467888


Q ss_pred             HHHHHHHc--CCCCCCCCHHHHHHHHHHHHH
Q 004234          509 VLQAMVQM--GVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       509 v~~~l~~l--G~~~~~~D~~~l~~~i~~~l~  537 (766)
                      ++|+++.-  ...++..|+++|...+.+++.
T Consensus       208 mAPEvL~ge~~~~s~KSDVWSLG~ILYELLT  238 (1021)
T PTZ00266        208 WSPELLLHETKSYDDKSDMWALGCIIYELCS  238 (1021)
T ss_pred             cCHHHHhccCCCCCchhHHHHHHHHHHHHHH
Confidence            88988742  345677899999988877765

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.21  E-value=1.2e-10  Score=119.96  Aligned_cols=186  Identities=14%  Similarity=0.122  Sum_probs=117.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +++|+|++|.||+|..  +|..||+|.....-...                                  .      .+-.
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~------~~~~   45 (257)
T cd08225           6 KKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPV----------------------------------K------EKEA   45 (257)
T ss_pred             EEecCCCcceEEEEEEcCCCceEEEEEeeHhhccc----------------------------------h------hhHH
Confidence            6899999999999999  58999999762210000                                  0      0112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~l~qI~~~  453 (766)
                      +.+|...+..+.    +..-+.+... .......+++|||++|.+|.+...... ...+...+....  +...+..+|..
T Consensus        46 ~~~E~~~l~~~~----h~~i~~~~~~-~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~  120 (257)
T cd08225          46 SKKEVILLAKMK----HPNIVTFFAS-FQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDR  120 (257)
T ss_pred             HHHHHHHHHhCC----CCChhhhhhe-eccCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            333444444332    1111122221 123456799999999999988653221 123433333332  22346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|++|.||++++ .+..++++|||.+..+.......      ....+.+.+++++....+..+...|++++...+.
T Consensus       121 ~i~H~dl~~~nil~~~-~~~~~~l~d~~~~~~~~~~~~~~------~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~  193 (257)
T cd08225         121 KILHRDIKSQNIFLSK-NGMVAKLGDFGIARQLNDSMELA------YTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLY  193 (257)
T ss_pred             CcccccCCHHHEEEcC-CCCeEEecccccchhccCCcccc------cccCCCccccCHHHHcCCCCCchhhHHHHHHHHH
Confidence            9999999999999985 23457999999998775432211      1123566677888777777777889999987665


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       194 ~l~  196 (257)
T cd08225         194 ELC  196 (257)
T ss_pred             HHH
Confidence            554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.21  E-value=1.4e-10  Score=122.35  Aligned_cols=181  Identities=17%  Similarity=0.182  Sum_probs=111.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..||+|++|.||++..  +|+.||||..+.....                                         ..+.+
T Consensus        10 ~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~-----------------------------------------~~~~~   48 (288)
T cd06616          10 GEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDE-----------------------------------------KEQKR   48 (288)
T ss_pred             HHhCCCCceEEEEEEECCCCCEEEEEEehhccCh-----------------------------------------HHHHH
Confidence            5799999999999998  5899999976322110                                         01223


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhh----hhcCCCHHHHHHHHHH--HHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSL----DELGVDRKRLGRYAVE--SYLE  448 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l----~~~g~d~~~la~~lv~--~~l~  448 (766)
                      +.+|...+.++.    ++++  +++++.  ......+++|||+++ ++.++...    ....++...+.....+  ..++
T Consensus        49 ~~~e~~~l~~~~----~~~~--iv~~~~~~~~~~~~~~~~e~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~  121 (288)
T cd06616          49 LLMDLDVVMRSS----DCPY--IVKFYGALFREGDCWICMELMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALN  121 (288)
T ss_pred             HHHHHHHHHHhc----CCCC--EeeeeeEEecCCcEEEEEecccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence            444554444432    1222  233322  234567999999875 44443211    1122344444333332  2366


Q ss_pred             HHHh-CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC---CCCCCCC
Q 004234          449 QILS-HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG---VLVPTGD  524 (766)
Q Consensus       449 qI~~-~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG---~~~~~~D  524 (766)
                      .+|. .|++|+|++|.||+++.  ++.++++|||++..+......       ....+...+++++....+   ..++..|
T Consensus       122 ~lh~~~~i~H~dlkp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~~~~D  192 (288)
T cd06616         122 YLKEELKIIHRDVKPSNILLDR--NGNIKLCDFGISGQLVDSIAK-------TRDAGCRPYMAPERIDPSARDGYDVRSD  192 (288)
T ss_pred             HHhhcCCeeccCCCHHHEEEcc--CCcEEEeecchhHHhccCCcc-------ccccCccCccCHHHhccccccCCcchhh
Confidence            7776 59999999999999986  789999999998765432111       011234556777777654   4567789


Q ss_pred             HHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFL  536 (766)
Q Consensus       525 ~~~l~~~i~~~l  536 (766)
                      ++++...+.+++
T Consensus       193 i~slG~il~el~  204 (288)
T cd06616         193 VWSLGITLYEVA  204 (288)
T ss_pred             hhHHHHHHHHHH
Confidence            999987666554

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.21  E-value=1.6e-10  Score=121.15  Aligned_cols=123  Identities=15%  Similarity=0.072  Sum_probs=75.3

Q ss_pred             CCeEEEEeecCCCChhhhhhhhhc---CCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecc
Q 004234          408 TPQILTMEYVPGIKINRIQSLDEL---GVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGM  482 (766)
Q Consensus       408 t~~vLVMEyieG~~L~d~~~l~~~---g~d~~~la~~l--v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGl  482 (766)
                      ...++||||++|++|.++......   ..+...+...+  +...+..+|..|++|+|++|.||+++.  ++.++++|||+
T Consensus        68 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~--~~~~~l~Dfg~  145 (268)
T cd05086          68 IPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTS--DLTVKVGDYGI  145 (268)
T ss_pred             CccEEEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcC--CccEEeccccc
Confidence            456999999999999886532211   11222222222  223467889999999999999999985  88999999998


Q ss_pred             eeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-------CCCCCCCCHHHHHHHHHHHH
Q 004234          483 MGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-------GVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       483 v~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-------G~~~~~~D~~~l~~~i~~~l  536 (766)
                      .............    ........++++++...       ...++..|++++...+.+++
T Consensus       146 ~~~~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~  202 (268)
T cd05086         146 GPSRYKEDYIETE----DDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELF  202 (268)
T ss_pred             ccccCcchhhhcc----cCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHH
Confidence            7643221110000    00112334556665431       11245679999987766554

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.21  E-value=8.5e-11  Score=123.23  Aligned_cols=184  Identities=16%  Similarity=0.167  Sum_probs=110.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.|+||.........                                         .+..
T Consensus         5 ~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------------~~~~   43 (283)
T cd07830           5 KQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSW-----------------------------------------EECM   43 (283)
T ss_pred             eeeccCCceEEEEEEECCCCcEEEEEEehhhccch-----------------------------------------hHHH
Confidence            4689999999999999  48899999763221100                                         0001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      ..+|...+.++    ..++++.-..-+.......++||||+ ++.+.+...... ..++...+...+.+  ..+..+|..
T Consensus        44 ~~~e~~~l~~~----~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~  118 (283)
T cd07830          44 NLREVKSLRKL----NEHPNIVKLKEVFRENDELYFVFEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKH  118 (283)
T ss_pred             HHHHHHHHHhc----cCCCCchhHHHHhhcCCcEEEEEecC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHC
Confidence            11222222222    11122111111112256679999999 556665433221 23454444444333  336788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~-lG~~~~~~D~~~l~~~i  532 (766)
                      |++|+|++|+||++++  ++.++|+|||.+..+.......       -..++..+++++... ....+...|++++...+
T Consensus       119 ~i~H~dl~~~ni~i~~--~~~~~l~d~~~~~~~~~~~~~~-------~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l  189 (283)
T cd07830         119 GFFHRDLKPENLLVSG--PEVVKIADFGLAREIRSRPPYT-------DYVSTRWYRAPEILLRSTSYSSPVDIWALGCIM  189 (283)
T ss_pred             CcccCCCChhhEEEcC--CCCEEEeecccceeccCCCCcC-------CCCCcccccCceeeecCcCcCCccchhhHHHHH
Confidence            9999999999999986  8999999999998775432110       011234455566443 33456778999998777


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       190 ~el~~  194 (283)
T cd07830         190 AELYT  194 (283)
T ss_pred             HHHHh
Confidence            66553

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.21  E-value=1.3e-10  Score=121.93  Aligned_cols=186  Identities=13%  Similarity=0.101  Sum_probs=118.9

Q ss_pred             ccccccceeEEEEEee-c-----CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-K-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~-----G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +-||.|++|.||+|.. .     +..|++|+.+......                                         
T Consensus        12 ~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~-----------------------------------------   50 (280)
T cd05043          12 DLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEI-----------------------------------------   50 (280)
T ss_pred             eeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHH-----------------------------------------
Confidence            5799999999999998 4     5889999874322111                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccc-cceeeeccCCCeEEEEeecCCCChhhhhhhhh-------cCCCHHHHHHHHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVK-VPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-------LGVDRKRLGRYAVE  444 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~-vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-------~g~d~~~la~~lv~  444 (766)
                      +.-++.+|+..+.++     +++++. +.....+.....++++||+++++|.++.....       ..++...+...+.+
T Consensus        51 ~~~~~~~e~~~l~~l-----~h~ni~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~  125 (280)
T cd05043          51 QVTLLLQESCLLYGL-----SHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQ  125 (280)
T ss_pred             HHHHHHHHHHHHHhC-----CCCCCCeEEEEEecCCCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHH
Confidence            111334455444433     223332 22222222356799999999999988653321       12344444433332


Q ss_pred             --HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004234          445 --SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (766)
Q Consensus       445 --~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~  522 (766)
                        ..+..+|..|++|+|++|.||+++.  ++.++++|||+++.+.+.......    ....+...+++++.......+..
T Consensus       126 i~~~l~~LH~~~i~H~di~p~nil~~~--~~~~kl~d~g~~~~~~~~~~~~~~----~~~~~~~~y~apE~~~~~~~~~~  199 (280)
T cd05043         126 IACGMSYLHKRGVIHKDIAARNCVIDE--ELQVKITDNALSRDLFPMDYHCLG----DNENRPVKWMALESLVNKEYSSA  199 (280)
T ss_pred             HHHHHHHHHHCCEeecccCHhhEEEcC--CCcEEECCCCCcccccCCceEEeC----CCCCcchhccCHHHHhcCCCCch
Confidence              3367889999999999999999985  789999999999876443211100    01122345677777766667778


Q ss_pred             CCHHHHHHHHHHHH
Q 004234          523 GDTTAVRRTAQFFL  536 (766)
Q Consensus       523 ~D~~~l~~~i~~~l  536 (766)
                      .|++++...+.+++
T Consensus       200 ~Di~slG~~l~el~  213 (280)
T cd05043         200 SDVWSFGVLLWELM  213 (280)
T ss_pred             hhHHHhHHHHHHHh
Confidence            89999987766554

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.21  E-value=4.2e-11  Score=127.09  Aligned_cols=192  Identities=13%  Similarity=0.083  Sum_probs=111.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.........                                        ...+
T Consensus        14 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~----------------------------------------~~~~   53 (311)
T cd07866          14 GKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDG----------------------------------------FPIT   53 (311)
T ss_pred             EEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCC----------------------------------------cchh
Confidence            6799999999999998  589999998743321110                                        0012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec-------cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWE-------YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-------~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l  447 (766)
                      +.+|...+.++.    +..-+.+...+.+       .....+++|||+++. +.+.........+...+...+.+  ..+
T Consensus        54 ~~~e~~~l~~l~----h~~i~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~~-l~~~~~~~~~~~~~~~~~~i~~~l~~al  128 (311)
T cd07866          54 ALREIKILKKLK----HPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHD-LSGLLENPSVKLTESQIKCYMLQLLEGI  128 (311)
T ss_pred             HHHHHHHHHhcC----CCCccchhhheecccccccccCceEEEEEecCCcC-HHHHHhccccCCCHHHHHHHHHHHHHHH
Confidence            233444333331    2111222222211       122358999999874 33322212223444444443332  347


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHH-----HHHHHhhcCHHHHHHHHHHcC-CCCC
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE-----AFYGIYEKDADKVLQAMVQMG-VLVP  521 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~-----l~~a~~~~D~~~v~~~l~~lG-~~~~  521 (766)
                      ..+|..|++|+|++|+||++++  ++.++++|||++..+..........     .......++..++++++...+ ...+
T Consensus       129 ~~lH~~~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  206 (311)
T cd07866         129 NYLHENHILHRDIKAANILIDN--QGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTT  206 (311)
T ss_pred             HHHHhCCeecCCCCHHHEEECC--CCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCc
Confidence            7889999999999999999986  8899999999998765432111000     000011224446677765432 3456


Q ss_pred             CCCHHHHHHHHHHHHH
Q 004234          522 TGDTTAVRRTAQFFLN  537 (766)
Q Consensus       522 ~~D~~~l~~~i~~~l~  537 (766)
                      ..|++++...+.+++.
T Consensus       207 ~~Dv~slG~il~el~~  222 (311)
T cd07866         207 AVDIWGIGCVFAEMFT  222 (311)
T ss_pred             hhHhHHHHHHHHHHHh
Confidence            7899999887766653

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.20  E-value=1.4e-10  Score=123.25  Aligned_cols=184  Identities=18%  Similarity=0.216  Sum_probs=108.9

Q ss_pred             ccccccceeEEEEEeec--CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~--G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+|+|++|.||+|...  |+.||||+.+......                                   -...+..|+ 
T Consensus        21 ~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~-----------------------------------~~~~~~~e~-   64 (296)
T cd06618          21 GEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKE-----------------------------------ENKRILMDL-   64 (296)
T ss_pred             eEeeccCCeEEEEEEECCCCeEEEEEEEeccCChH-----------------------------------HHHHHHHHH-
Confidence            78999999999999993  9999999874321110                                   000011111 


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh-C
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS-H  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~-~  453 (766)
                           ..+.+   .. +++++.-..-+.......+++|||+++ .+.++.......++...+.....+  ..+..+|. .
T Consensus        65 -----~~~~~---~~-~~~~i~~~~~~~~~~~~~~~v~e~~~~-~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~  134 (296)
T cd06618          65 -----DVVLK---SH-DCPYIVKCYGYFITDSDVFICMELMST-CLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKH  134 (296)
T ss_pred             -----HHHHh---cc-CCCchHhhheeeecCCeEEEEeeccCc-CHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence                 11111   11 122211111111224567999999976 455543322223343333333222  23567785 6


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC----CCCCCCHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV----LVPTGDTTAVR  529 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~----~~~~~D~~~l~  529 (766)
                      |++|+|++|.||+++.  ++.++|+|||++..+.......       ...+...+++++......    .+...|++++.
T Consensus       135 ~i~H~dl~p~nill~~--~~~~kL~dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG  205 (296)
T cd06618         135 GVIHRDVKPSNILLDA--SGNVKLCDFGISGRLVDSKAKT-------RSAGCAAYMAPERIDPPDPNPKYDIRADVWSLG  205 (296)
T ss_pred             CEecCCCcHHHEEEcC--CCCEEECccccchhccCCCccc-------CCCCCccccCHhhcCCCCCccccccchhHHHHH
Confidence            9999999999999985  8899999999998775432211       012345567777765432    55678999998


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       206 ~il~el~~  213 (296)
T cd06618         206 ISLVELAT  213 (296)
T ss_pred             HHHHHHHh
Confidence            77766653

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>PRK10345 hypothetical protein; Provisional

Probab=99.20  E-value=1.4e-10  Score=119.53  Aligned_cols=142  Identities=10%  Similarity=0.103  Sum_probs=89.7

Q ss_pred             cccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .++||+|++|.||.-..++.. +||+.+++-...                                    .+      ++
T Consensus         7 ~~~LG~G~~~~Vy~hp~~~~k-~IKv~~~~~~~~------------------------------------~~------~~   43 (210)
T PRK10345          7 QSPLGTGRHRKCYAHPEDAQR-CIKIVYHRGDGG------------------------------------DK------EI   43 (210)
T ss_pred             cceecCCCceEEEECCCCcCe-EEEEEeccccch------------------------------------HH------HH
Confidence            478999999999962224555 699885532100                                    01      23


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCe------EEEEee--cCCCChhhhhhhhhcCCCH-HHHHHHHHHHHHH
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQ------ILTMEY--VPGIKINRIQSLDELGVDR-KRLGRYAVESYLE  448 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~------vLVMEy--ieG~~L~d~~~l~~~g~d~-~~la~~lv~~~l~  448 (766)
                      .+|.+.+..+.+.-.+  +-.||++|..+.+..      .++|||  ++|++|.++....  .++. ......++..+++
T Consensus        44 ~rEi~~l~~L~~~~~~--h~nIvr~yg~~et~~g~g~v~~~I~e~~G~~~~tL~~~l~~~--~~~e~~~~~~~~L~~l~~  119 (210)
T PRK10345         44 RRELKYYAHLSRRLID--WSGIPRYYGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQC--RYEEDVAQLRQLLKKLKR  119 (210)
T ss_pred             HHHHHHHHHhhccCCC--CcccceeeEEEEeCCCCeEEEEEEecCCCCcchhHHHHHHcc--cccHhHHHHHHHHHHHHH
Confidence            4444444444332222  334677776555542      278999  5579999976432  2222 2234556667778


Q ss_pred             HHHhCCccccCCCCCcEEEeecC--CCcEEEEeecceecc
Q 004234          449 QILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSI  486 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~--~g~l~LiDFGlv~~L  486 (766)
                      .+|.+|++|+|+||.||+++..+  +++++|+||+-...+
T Consensus       120 yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~~~  159 (210)
T PRK10345        120 YLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGESTF  159 (210)
T ss_pred             HHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCCcce
Confidence            99999999999999999997422  347999995544444

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.20  E-value=5.9e-11  Score=137.04  Aligned_cols=148  Identities=11%  Similarity=0.028  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcC----CCHHHHHHHH--HHHHHH
Q 004234          376 DYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG----VDRKRLGRYA--VESYLE  448 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g----~d~~~la~~l--v~~~l~  448 (766)
                      .+.+|+..+.++.     +++| .+-.++ +.....+++||++.+. +.+........    .....+...+  +-..+.
T Consensus       209 ~~~~Ei~il~~l~-----HpnIv~l~~~~-~~~~~~~lv~e~~~~~-l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~  281 (501)
T PHA03210        209 QLENEILALGRLN-----HENILKIEEIL-RSEANTYMITQKYDFD-LYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVE  281 (501)
T ss_pred             HHHHHHHHHHhCC-----CCCcCcEeEEE-EECCeeEEEEeccccC-HHHHHhhccccccccccHHHHHHHHHHHHHHHH
Confidence            4556766666552     2332 232222 3456679999998764 33322111100    1111121121  223478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      .+|..|++|+|+||.|||++.  ++.++|+|||++..+.......     ..-..++..++++++..-+......|++++
T Consensus       282 yLH~~gIiHrDLKP~NILl~~--~~~vkL~DFGla~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSl  354 (501)
T PHA03210        282 YIHDKKLIHRDIKLENIFLNC--DGKIVLGDFGTAMPFEKEREAF-----DYGWVGTVATNSPEILAGDGYCEITDIWSC  354 (501)
T ss_pred             HHHhCCeecCCCCHHHEEECC--CCCEEEEeCCCceecCcccccc-----cccccCCcCCCCchhhcCCCCCcHHHHHHH
Confidence            899999999999999999986  8999999999998875432110     001235666777888776666777899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       355 Gvil~ell~  363 (501)
T PHA03210        355 GLILLDMLS  363 (501)
T ss_pred             HHHHHHHHH
Confidence            988777663

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.19  E-value=6.3e-11  Score=131.06  Aligned_cols=177  Identities=18%  Similarity=0.150  Sum_probs=114.7

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +-+|+|.||.||+|.++++.||||+..+.-.+....+-+|                                 ....  .
T Consensus       216 eli~~Grfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~I---------------------------------y~lp--~  260 (534)
T KOG3653|consen  216 ELIGRGRFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNI---------------------------------YSLP--G  260 (534)
T ss_pred             HHhhcCccceeehhhccCceeEEEecCHHHHHHHHhHHHH---------------------------------Hhcc--C
Confidence            4689999999999999999999998754333332222111                                 1111  2


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHh---
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILS---  452 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~---la~~lv~~~l~qI~~---  452 (766)
                      .+..|+.+|-..=+..         .....+-+||+||-+-++|.++..  ..-++...   ++..+++ .+..+|+   
T Consensus       261 m~h~nIl~Fi~~ekr~---------t~~~~eywLVt~fh~kGsL~dyL~--~ntisw~~~cria~Smar-GLa~LHee~p  328 (534)
T KOG3653|consen  261 MKHENILQFIGAEKRG---------TADRMEYWLVTEFHPKGSLCDYLK--ANTISWNSLCRIAESMAR-GLAHLHEELP  328 (534)
T ss_pred             ccchhHHHhhchhccC---------CccccceeEEeeeccCCcHHHHHH--hccccHHHHHHHHHHHHH-HHHHhcccCC
Confidence            3444666663221111         011235689999999999999854  33344433   3333333 3555663   


Q ss_pred             ------CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004234          453 ------HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (766)
Q Consensus       453 ------~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~  526 (766)
                            .+|.|||+|..||||..  |+..+|.|||++..+++..-..-..    .--++..||++++++-.+--.  |..
T Consensus       329 ~~d~~Kp~IaHRDlkSkNVLvK~--DlTccIaDFGLAl~~~p~~~~~d~~----~qVGT~RYMAPEvLEgainl~--d~~  400 (534)
T KOG3653|consen  329 RGDHHKPPIAHRDLKSKNVLVKN--DLTCCIADFGLALRLEPGKPQGDTH----GQVGTRRYMAPEVLEGAINLQ--DRD  400 (534)
T ss_pred             cCCCCCCccccccccccceEEcc--CCcEEeeccceeEEecCCCCCcchh----hhhhhhhhcCHHHHhhhcccc--cHH
Confidence                  46999999999999985  9999999999999998754433211    134788999999998654332  244


Q ss_pred             HHHH
Q 004234          527 AVRR  530 (766)
Q Consensus       527 ~l~~  530 (766)
                      +|++
T Consensus       401 Afkr  404 (534)
T KOG3653|consen  401 AFKR  404 (534)
T ss_pred             HHHH
Confidence            5544

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.19  E-value=2.6e-10  Score=119.39  Aligned_cols=188  Identities=19%  Similarity=0.166  Sum_probs=115.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                  ...      .+
T Consensus         5 ~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~----------------------------------~~~------~~   44 (287)
T cd07838           5 AEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEE----------------------------------GIP------LS   44 (287)
T ss_pred             EEecccCceEEEEEEECCCCCEEEEEEeccccccc----------------------------------hhh------hh
Confidence            5689999999999999  48999999885432211                                  000      01


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec----cCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWE----YTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e----~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~q  449 (766)
                      +.+|...+.++.. ..+..-+.+...+..    .+...+++|||+++ .+.+..... ...++...+...+.+  ..+..
T Consensus        45 ~~~e~~~l~~l~~-~~h~~i~~~~~~~~~~~~~~~~~~~l~~e~~~~-~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~  122 (287)
T cd07838          45 TLREIALLKQLES-FEHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMRQLLRGVDF  122 (287)
T ss_pred             HHHHHHHHHHhhc-cCCCCcceEEEEEeeccCCCCceeEEEehhccc-CHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence            2223322233221 111111222222211    11237899999987 566643321 223444444443333  34678


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|+|++|+||+++.  ++.++|+|||.+..++......      . ......+++++....+..+...|.+++.
T Consensus       123 LH~~~i~h~~l~~~nili~~--~~~~~l~dfg~~~~~~~~~~~~------~-~~~~~~~~~PE~~~~~~~~~~~Di~s~G  193 (287)
T cd07838         123 LHSHRIVHRDLKPQNILVTS--DGQVKIADFGLARIYSFEMALT------S-VVVTLWYRAPEVLLQSSYATPVDMWSVG  193 (287)
T ss_pred             HHHCCeeeccCChhhEEEcc--CCCEEEeccCcceeccCCcccc------c-ccccccccChHHhccCCCCCcchhhhHH
Confidence            89999999999999999986  7999999999998875432110      0 1124456677777766677788999998


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       194 ~~l~~l~~  201 (287)
T cd07838         194 CIFAELFR  201 (287)
T ss_pred             HHHHHHHh
Confidence            87776653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.19  E-value=1.8e-10  Score=120.43  Aligned_cols=183  Identities=12%  Similarity=0.088  Sum_probs=114.8

Q ss_pred             ccccccceeEEEEEeec-------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      .-+|.|++|.||+|+..       .+.|++|+....-.+                               ...       
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~-------------------------------~~~-------   52 (275)
T cd05046          11 TTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDE-------------------------------NLQ-------   52 (275)
T ss_pred             eeecccceeEEEEEEeccCCcCCCcceEEEEccCCccch-------------------------------HHH-------
Confidence            56999999999999962       367999965221000                               000       


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhc--------CCCHHHHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL--------GVDRKRLGRY  441 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~--------g~d~~~la~~  441 (766)
                         -+|.+|++.+.++.    + ++  +++++.  ......++||||++|++|.++......        .+....+...
T Consensus        53 ---~~~~~E~~~l~~l~----h-~~--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~  122 (275)
T cd05046          53 ---SEFRRELDMFRKLS----H-KN--VVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVAL  122 (275)
T ss_pred             ---HHHHHHHHHHHhcC----C-cc--eeeeEEEECCCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHH
Confidence               13455665555542    2 22  233332  223467999999999999987543221        2344443333


Q ss_pred             HH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004234          442 AV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  519 (766)
Q Consensus       442 lv--~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~  519 (766)
                      +.  ...+..+|..|++|+|++|.||+++.  ++.+++.|||+..............     ......++.++....+..
T Consensus       123 ~~~l~~~l~~LH~~~i~H~dlkp~Nili~~--~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~y~~PE~~~~~~~  195 (275)
T cd05046         123 CTQIALGMDHLSNARFVHRDLAARNCLVSS--QREVKVSLLSLSKDVYNSEYYKLRN-----ALIPLRWLAPEAVQEDDF  195 (275)
T ss_pred             HHHHHHHHHHhhhcCcccCcCccceEEEeC--CCcEEEcccccccccCcccccccCC-----ceeEEeecChhhhccCCC
Confidence            32  23468899999999999999999986  8899999999987553321111000     011233666777666666


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 004234          520 VPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       520 ~~~~D~~~l~~~i~~~l  536 (766)
                      .+..|++++...+.+++
T Consensus       196 ~~~~Di~slG~~l~~l~  212 (275)
T cd05046         196 STKSDVWSFGVLMWEVF  212 (275)
T ss_pred             CchhhHHHHHHHHHHHH
Confidence            77789999987766554

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.19  E-value=1.9e-10  Score=119.92  Aligned_cols=185  Identities=16%  Similarity=0.153  Sum_probs=113.1

Q ss_pred             ccccccceeEEEEEee-----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||.|++|.||+|.+     +|+.||||+...+.....                                        .
T Consensus         5 ~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~----------------------------------------~   44 (273)
T cd05074           5 RMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSS----------------------------------------D   44 (273)
T ss_pred             hcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChH----------------------------------------H
Confidence            5799999999999986     268999998855432210                                        0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccC--------CCeEEEEeecCCCChhhhhhhhhc-----CCCHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT--------TPQILTMEYVPGIKINRIQSLDEL-----GVDRKRLGR  440 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s--------t~~vLVMEyieG~~L~d~~~l~~~-----g~d~~~la~  440 (766)
                      .-++.+|.+.+.++.     +++  +.+.+....        ...++++||.+++++.+.......     ..+...+..
T Consensus        45 ~~~~~~E~~~l~~l~-----h~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~  117 (273)
T cd05074          45 IEEFLREAACMKEFD-----HPN--VIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVR  117 (273)
T ss_pred             HHHHHHHHHHHhcCC-----CCC--cceEEEEEccCCCCCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHH
Confidence            112344544444331     222  233332111        123789999999998875432211     123333333


Q ss_pred             HHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004234          441 YAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  518 (766)
Q Consensus       441 ~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~  518 (766)
                      .+.+  ..+..+|..|++|+|++|.||+++.  ++.++++|||.+..+.........    ........++.++....+.
T Consensus       118 ~~~~i~~~l~~lH~~~i~H~dikp~nili~~--~~~~kl~dfg~~~~~~~~~~~~~~----~~~~~~~~~~~pe~~~~~~  191 (273)
T cd05074         118 FMIDIASGMEYLSSKNFIHRDLAARNCMLNE--NMTVCVADFGLSKKIYSGDYYRQG----CASKLPVKWLALESLADNV  191 (273)
T ss_pred             HHHHHHHHHHHHHhCCEeecccchhhEEEcC--CCCEEECcccccccccCCcceecC----CCccCchhhcCHhHHhcCc
Confidence            2222  3367889999999999999999985  789999999998876432210000    0011224455666666666


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004234          519 LVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       519 ~~~~~D~~~l~~~i~~~l  536 (766)
                      .+...|++++...+.+++
T Consensus       192 ~~~~sDi~slG~il~el~  209 (273)
T cd05074         192 YTTHSDVWAFGVTMWEIM  209 (273)
T ss_pred             cchhhhhHHHHHHHHHHh
Confidence            677789999987766554

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.19  E-value=1.1e-10  Score=126.54  Aligned_cols=186  Identities=17%  Similarity=0.126  Sum_probs=112.5

Q ss_pred             ccccccceeEEEEEee--c--CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--K--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~--G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      +.||+|++|.||+|+.  .  |..||||+.+......                                  ..      .
T Consensus         6 ~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~----------------------------------~~------~   45 (332)
T cd07857           6 KELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKK----------------------------------IL------A   45 (332)
T ss_pred             EEccccCCeEEEEEEeCCCCcCceEEEEEeccccccc----------------------------------hh------H
Confidence            5789999999999998  4  7799999873221110                                  00      1


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeee------ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HH
Q 004234          375 IDYTQEAANAELFASNFKDMDYVKVPTIFW------EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SY  446 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~------e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~  446 (766)
                      -++.+|...+.++.    ++++  +++.+.      .-....+++|||+++ .|.+... ....++...+...+.+  ..
T Consensus        46 ~~~~~E~~~l~~l~----~h~~--iv~~~~~~~~~~~~~~~~~~~~e~~~~-~L~~~l~-~~~~~~~~~~~~~~~qi~~a  117 (332)
T cd07857          46 KRALRELKLLRHFR----GHKN--ITCLYDMDIVFPGNFNELYLYEELMEA-DLHQIIR-SGQPLTDAHFQSFIYQILCG  117 (332)
T ss_pred             HHHHHHHHHHHHhc----CCCC--hheeeeeeeeccccCCcEEEEEecccC-CHHHHHh-cCCCCCHHHHHHHHHHHHHH
Confidence            12334444444432    2222  222221      112346899999875 6666432 2223444444443333  34


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCH
Q 004234          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDT  525 (766)
Q Consensus       447 l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~  525 (766)
                      +..+|..|++|+|+||+||+++.  ++.++|+|||++..+..........  ..-..++..+++++....+ ..+...|+
T Consensus       118 L~~LH~~givH~dlkp~Nili~~--~~~~kl~Dfg~a~~~~~~~~~~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~~Di  193 (332)
T cd07857         118 LKYIHSANVLHRDLKPGNLLVNA--DCELKICDFGLARGFSENPGENAGF--MTEYVATRWYRAPEIMLSFQSYTKAIDV  193 (332)
T ss_pred             HHHHHhCCcccCCCCHHHeEEcC--CCCEEeCcCCCceeccccccccccc--ccCcccCccccCcHHHhCCCCCCcHHHH
Confidence            77889999999999999999986  8899999999998776432211000  0111235556777765432 34566799


Q ss_pred             HHHHHHHHHHH
Q 004234          526 TAVRRTAQFFL  536 (766)
Q Consensus       526 ~~l~~~i~~~l  536 (766)
                      +++...+.+++
T Consensus       194 ~slGv~l~~l~  204 (332)
T cd07857         194 WSVGCILAELL  204 (332)
T ss_pred             HHHHHHHHHHH
Confidence            99887666554

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.18  E-value=1.8e-10  Score=120.33  Aligned_cols=184  Identities=18%  Similarity=0.149  Sum_probs=113.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|.+|.||+|+.  +|+.|++|+......+.                                  .+...+..|  
T Consensus         5 ~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~----------------------------------~~~~~~~~e--   48 (282)
T cd07829           5 EKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEE----------------------------------GIPSTALRE--   48 (282)
T ss_pred             hcccccCcceEEEeeecCCCcEEEEEEeccccccc----------------------------------cccHHHHHH--
Confidence            4689999999999999  49999999986543110                                  000011112  


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                          +.-+.++    . ++++ .+...+ ......+++|||+++ +|.++........+...+...+.+  ..+..+|..
T Consensus        49 ----~~~l~~~----~-~~~i~~~~~~~-~~~~~~~~v~e~~~~-~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~  117 (282)
T cd07829          49 ----ISLLKEL----K-HPNIVKLLDVI-HTERKLYLVFEYCDM-DLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSH  117 (282)
T ss_pred             ----HHHHHhc----C-CCCHHHHHhhh-hcCCceEEEecCcCc-CHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence                2212211    1 1111 111122 123567999999986 787765432223444444333322  346789999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~~i  532 (766)
                      |++|+|++|.||++++  ++.+++.|||.+..+.......-      ....+..++++++...+ ..++..|++++...+
T Consensus       118 ~i~H~~l~~~ni~~~~--~~~~~l~d~g~~~~~~~~~~~~~------~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l  189 (282)
T cd07829         118 RILHRDLKPQNILINR--DGVLKLADFGLARAFGIPLRTYT------HEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIF  189 (282)
T ss_pred             CcccCCCChheEEEcC--CCCEEEecCCcccccCCCccccC------ccccCcCcCChHHhcCCcCCCccccHHHHHHHH
Confidence            9999999999999986  78999999999887754432110      01123345666666554 567778999998777


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       190 ~~l~~  194 (282)
T cd07829         190 AEMIT  194 (282)
T ss_pred             HHHHh
Confidence            66553

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.18  E-value=1.7e-10  Score=133.16  Aligned_cols=79  Identities=19%  Similarity=0.214  Sum_probs=55.7

Q ss_pred             CCeEEEEeecCCCChhhhhhhhhc-----------------------CCCHHHHHHHH--HHHHHHHHHhCCccccCCCC
Q 004234          408 TPQILTMEYVPGIKINRIQSLDEL-----------------------GVDRKRLGRYA--VESYLEQILSHGFFHADPHP  462 (766)
Q Consensus       408 t~~vLVMEyieG~~L~d~~~l~~~-----------------------g~d~~~la~~l--v~~~l~qI~~~GffHaDpHP  462 (766)
                      ...+|||||+++++|.++......                       ..+...+...+  +...+..+|..|++|+|+||
T Consensus       258 ~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp  337 (507)
T PLN03224        258 GSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKP  337 (507)
T ss_pred             CceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCch
Confidence            457999999999999886532110                       01111111111  22346778999999999999


Q ss_pred             CcEEEeecCCCcEEEEeecceeccCh
Q 004234          463 GNIAVDDVNGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       463 GNILV~~~~~g~l~LiDFGlv~~L~~  488 (766)
                      +||+++.  ++.++++|||++..+..
T Consensus       338 ~NILl~~--~~~~kL~DFGla~~~~~  361 (507)
T PLN03224        338 ENLLVTV--DGQVKIIDFGAAVDMCT  361 (507)
T ss_pred             HhEEECC--CCcEEEEeCcCcccccc
Confidence            9999986  78999999999876543

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.18  E-value=4.8e-11  Score=134.30  Aligned_cols=187  Identities=20%  Similarity=0.196  Sum_probs=129.4

Q ss_pred             ccccccceeEEEEEeecC-eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKG-EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G-~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|-||.||.+...| ..||||..||+..+..                                         --||
T Consensus       544 ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~-----------------------------------------r~~F  582 (807)
T KOG1094|consen  544 EKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNA-----------------------------------------RNDF  582 (807)
T ss_pred             hhhcCcccceeEEEEecCceEEEEeecCcccchhH-----------------------------------------HHHH
Confidence            579999999999999964 9999999999864431                                         1378


Q ss_pred             HHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcC-CCHHHHHHHH--HHHHHHHHHhC
Q 004234          378 TQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG-VDRKRLGRYA--VESYLEQILSH  453 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g-~d~~~la~~l--v~~~l~qI~~~  453 (766)
                      ..|++-+.+++    + |+| .+--| .--....+++|||++.+.|+++....... .+........  +.+.+..+-..
T Consensus       583 ~kEIkiLsqLk----h-PNIveLvGV-C~~DePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~  656 (807)
T KOG1094|consen  583 LKEIKILSRLK----H-PNIVELLGV-CVQDDPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESL  656 (807)
T ss_pred             HHHHHHHhccC----C-CCeeEEEee-eecCCchHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhh
Confidence            88888777762    3 332 22211 11234568999999999999965322111 2323333332  23346667789


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      +|+|+|+.|.|+|++.  ++++++.||||++.+-..+....    .+-.---..+|+.+-+-+|-.+...|+.+|...+.
T Consensus       657 nfVHrd~a~rNcLv~~--e~~iKiadfgmsR~lysg~yy~v----qgr~vlpiRwmawEsillgkFttaSDvWafgvTlw  730 (807)
T KOG1094|consen  657 NFVHRDLATRNCLVDG--EFTIKIADFGMSRNLYSGDYYRV----QGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLW  730 (807)
T ss_pred             chhhccccccceeecC--cccEEecCcccccccccCCceee----ecceeeeeeehhHHHHHhccccchhhhhhhHHHHH
Confidence            9999999999999986  88999999999997643322111    00011135677888888999999999999998887


Q ss_pred             HHHHH
Q 004234          534 FFLNS  538 (766)
Q Consensus       534 ~~l~~  538 (766)
                      +++..
T Consensus       731 E~~~~  735 (807)
T KOG1094|consen  731 EVFML  735 (807)
T ss_pred             HHHHH
Confidence            66543

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.16  E-value=1e-10  Score=122.81  Aligned_cols=185  Identities=19%  Similarity=0.194  Sum_probs=112.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|..  +|+.||||+.+.+....                                  ....      +
T Consensus         5 ~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~~~------~   44 (283)
T cd07835           5 EKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDE----------------------------------GVPS------T   44 (283)
T ss_pred             eEecCCCCeEEEEEEEcCCCCEEEEEEeecccccc----------------------------------cchh------H
Confidence            5689999999999998  69999999874332110                                  0000      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|...+.++.    +..-+.+...+. .....+++|||+++ ++.++..... ..++...+.....+  ..+..+|..
T Consensus        45 ~~~E~~~l~~l~----~~~iv~~~~~~~-~~~~~~iv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~  118 (283)
T cd07835          45 AIREISLLKELN----HPNIVRLLDVVH-SENKLYLVFEFLDL-DLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSH  118 (283)
T ss_pred             HHHHHHHHHhcC----CCCccCHhheec-cCCeEEEEEeccCc-CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            233443333332    222222222222 23567999999965 6776543221 23444444443332  336788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i  532 (766)
                      |++|+|++|+||+++.  ++.++++|||++..+....+....      ......+++++.... ...+...|++++...+
T Consensus       119 ~~~H~dl~p~nil~~~--~~~~~l~df~~~~~~~~~~~~~~~------~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l  190 (283)
T cd07835         119 RVLHRDLKPQNLLIDR--EGALKLADFGLARAFGVPVRTYTH------EVVTLWYRAPEILLGSRQYSTPVDIWSIGCIF  190 (283)
T ss_pred             CeeCCCCCHHHEEEcC--CCcEEEeecccccccCCCccccCc------cccccCCCCCceeecCcccCcHHHHHHHHHHH
Confidence            9999999999999986  889999999999876543221100      011334555664433 2345667999988777


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       191 ~~l~~  195 (283)
T cd07835         191 AEMVN  195 (283)
T ss_pred             HHHHh
Confidence            66553

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.16  E-value=8.7e-11  Score=127.57  Aligned_cols=186  Identities=15%  Similarity=0.138  Sum_probs=110.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+..+.-...                                   ...      +
T Consensus        11 ~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~------~   49 (336)
T cd07849          11 SYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQT-----------------------------------FCQ------R   49 (336)
T ss_pred             EEEEecCCeEEEEEEEcCCCCeEEEEEecccccch-----------------------------------hHH------H
Confidence            6799999999999998  69999999875421111                                   000      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec----cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWE----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e----~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      +..|...+.++.    +..-+.+..++..    .....+++|||+++ .+.+..  ....++...+...+.+  ..+..+
T Consensus        50 ~~~E~~~l~~l~----h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~--~~~~l~~~~~~~i~~ql~~aL~~L  122 (336)
T cd07849          50 TLREIKILRRFK----HENIIGILDIIRPPSFESFNDVYIVQELMET-DLYKLI--KTQHLSNDHIQYFLYQILRGLKYI  122 (336)
T ss_pred             HHHHHHHHHhCC----CCCcCchhheeecccccccceEEEEehhccc-CHHHHH--hcCCCCHHHHHHHHHHHHHHHHHH
Confidence            222333333322    1111222222211    12346899999987 454432  2223344443333322  347889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCCHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVR  529 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~-lG~~~~~~D~~~l~  529 (766)
                      |..|++|+|+||.||+++.  ++.++++|||++..........  .. ..-..++..+++++... ....+...|++++.
T Consensus       123 H~~~ivH~dlkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~~--~~-~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG  197 (336)
T cd07849         123 HSANVLHRDLKPSNLLLNT--NCDLKICDFGLARIADPEHDHT--GF-LTEYVATRWYRAPEIMLNSKGYTKAIDIWSVG  197 (336)
T ss_pred             HhCCeeccCCCHHHEEECC--CCCEEECcccceeecccccccc--CC-cCCcCcCCCccChHHhhCCCCCCcHHHHHHHH
Confidence            9999999999999999985  8899999999988764422110  00 00012344466677543 33456678999998


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       198 vil~el~~  205 (336)
T cd07849         198 CILAEMLS  205 (336)
T ss_pred             HHHHHHHh
Confidence            77766553

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.15  E-value=3.4e-10  Score=122.51  Aligned_cols=187  Identities=14%  Similarity=0.103  Sum_probs=110.6

Q ss_pred             ccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 004234          303 AASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQE  380 (766)
Q Consensus       303 saSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~E  380 (766)
                      .|++++||+|..  +|+.||||+....-...                                  +..+      .+.+|
T Consensus        10 ~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~------~~~~e   49 (328)
T cd08226          10 FCNLTSVYLARHTPTGTLVTVRITDLENCTE----------------------------------EHLK------ALQNE   49 (328)
T ss_pred             ccCceeEEEEEEcCCCcEEEEEEeccccCCH----------------------------------HHHH------HHHHH
Confidence            349999999998  69999999874321100                                  0001      22233


Q ss_pred             HHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhCCcc
Q 004234          381 AANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSHGFF  456 (766)
Q Consensus       381 A~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~Gff  456 (766)
                      +.-+.    .+. +++| .+..++ ......+++|||++|+++.++.... ..+.+...+...+.+  ..+..+|..|++
T Consensus        50 ~~~~~----~l~-h~niv~~~~~~-~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~iv  123 (328)
T cd08226          50 VVLSH----FFR-HPNIMTSWTVF-TTGSWLWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYI  123 (328)
T ss_pred             HHHHH----hCC-CCCcceEeeeE-ecCCceEEEEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCee
Confidence            32222    232 3333 333333 3345679999999999998865321 223444443333322  336788999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccChhhH-HHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCCHHHHHHHHH
Q 004234          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR-EGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r-~~l~~l~~a~~~~D~~~v~~~l~~lG--~~~~~~D~~~l~~~i~  533 (766)
                      |+|++|.||++..  ++.+++.|||.+........ ................++.+++...+  -.++..|++++...+.
T Consensus       124 HrDlkp~Nill~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~  201 (328)
T cd08226         124 HRNIKASHILISG--DGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITAC  201 (328)
T ss_pred             cCCCCHHHEEEeC--CCcEEEechHHHhhhhccCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHH
Confidence            9999999999985  88999999986544322110 00000000001122346777776543  2456789999988777


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       202 el~~  205 (328)
T cd08226         202 ELAT  205 (328)
T ss_pred             HHHh
Confidence            6653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.15  E-value=2.1e-10  Score=118.28  Aligned_cols=118  Identities=17%  Similarity=0.163  Sum_probs=82.0

Q ss_pred             CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceec
Q 004234          408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  485 (766)
Q Consensus       408 t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~  485 (766)
                      ...+++|||++|++|.+.... ...++...+...+.+  ..+..+|..|++|+|+||.||+++.  ++.++++|||....
T Consensus        58 ~~~~lv~e~~~~~~L~~~l~~-~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~--~~~~~l~df~~~~~  134 (237)
T cd05576          58 DSVFLVLQHAEGGKLWSHISK-FLNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDD--RGHIQLTYFSRWSE  134 (237)
T ss_pred             CeEEEEEecCCCCCHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcC--CCCEEEecccchhc
Confidence            457999999999999886432 223444444443332  3367889999999999999999986  88999999998776


Q ss_pred             cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          486 ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       486 L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      +......         ......+++++....+..++..|++++...+.+++.
T Consensus       135 ~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~  177 (237)
T cd05576         135 VEDSCDG---------EAVENMYCAPEVGGISEETEACDWWSLGAILFELLT  177 (237)
T ss_pred             ccccccc---------CCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHH
Confidence            6542211         112233566666655555677899999877766553

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.13  E-value=1e-09  Score=115.18  Aligned_cols=149  Identities=16%  Similarity=0.159  Sum_probs=97.1

Q ss_pred             cccc-ccceeEEEEEeecCeeEEEEEec-CCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIA-AASLGQVHRARLKGEEVVVKVQR-PGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIg-saSiGQVhrA~l~G~~VAVKVqr-P~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..+| .|+.|.||.....|..+|||.-+ +++-..             ++...                 +.......-.
T Consensus        37 ~~lg~~~g~gtv~~v~~~~~~~vlk~~~r~~~i~k-------------v~~~~-----------------~~~~~~~~~r   86 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTPGVNWVLRHYRRGGLIGK-------------LSKDR-----------------YLFTGLERTR   86 (239)
T ss_pred             ceeecCCCCccEEEEEeCCceEEEEEeeEcchHHh-------------hhhhc-----------------ccccchhhhH
Confidence            4676 89999999999988999999763 332111             11000                 0000012234


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc---C---CCeEEEEeecCC-CChhhhhhhhhcCCCHHHHHHHHHHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY---T---TPQILTMEYVPG-IKINRIQSLDELGVDRKRLGRYAVESYLEQ  449 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~---s---t~~vLVMEyieG-~~L~d~~~l~~~g~d~~~la~~lv~~~l~q  449 (766)
                      +.+|.+.+.++.+     +++.+|.++...   .   ...+|+|||++| .+|.++..  ....+.. .... +...+..
T Consensus        87 ~~rE~~ll~~L~~-----~gi~vP~pl~~~~~~~~~~~~~~lV~e~l~G~~~L~~~l~--~~~l~~~-~~~~-i~~~l~~  157 (239)
T PRK01723         87 AFAEFRLLAQLYE-----AGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVALLQ--EAPLSEE-QWQA-IGQLIAR  157 (239)
T ss_pred             HHHHHHHHHHHHh-----CCCCCceeEeeeeeecCcceeeeEEEEecCCCCCHHHHHh--cCCCCHH-HHHH-HHHHHHH
Confidence            5667777777754     346667665421   1   123699999998 67877642  2222332 2233 3456889


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (766)
                      +|..|++|+|+||+|||+++  +++++|+|||.+..-.+
T Consensus       158 lH~~GI~HrDlkp~NILv~~--~~~v~LIDfg~~~~~~~  194 (239)
T PRK01723        158 FHDAGVYHADLNAHNILLDP--DGKFWLIDFDRGELRTP  194 (239)
T ss_pred             HHHCCCCCCCCCchhEEEcC--CCCEEEEECCCcccCCC
Confidence            99999999999999999985  67999999998887653

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.13  E-value=5.7e-10  Score=119.32  Aligned_cols=128  Identities=13%  Similarity=0.114  Sum_probs=84.4

Q ss_pred             CCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecce
Q 004234          407 TTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM  483 (766)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv  483 (766)
                      ....+++|||++|+++.++.... ..+.+...+...+.+  ..+..+|..|++|+|++|+||+++.  ++.+++.|||.+
T Consensus        71 ~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~--~~~~kl~d~~~~  148 (314)
T cd08216          71 DSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSG--DGKVVLSGLRYS  148 (314)
T ss_pred             CCeEEEEEeccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEec--CCceEEecCccc
Confidence            45679999999999998865422 223444444433322  3367889999999999999999986  789999999988


Q ss_pred             eccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHH
Q 004234          484 GSISPNIREG-LLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       484 ~~L~~~~r~~-l~~l~~a~~~~D~~~v~~~l~~lG--~~~~~~D~~~l~~~i~~~l  536 (766)
                      ..+....... ...........+..++++++....  ..++..|++++...+.+++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~  204 (314)
T cd08216         149 VSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELA  204 (314)
T ss_pred             eeeccccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHH
Confidence            7664322110 000001112344557778776543  2456789999987766654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.13  E-value=1.4e-10  Score=125.16  Aligned_cols=185  Identities=18%  Similarity=0.183  Sum_probs=110.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.|+||+..+.....                                  ...+      .
T Consensus         6 ~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~----------------------------------~~~~------~   45 (330)
T cd07834           6 KPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDL----------------------------------IDAK------R   45 (330)
T ss_pred             eeecCCCCeEEEEEEeCCCCcEEEEEeeccccccc----------------------------------hhhh------h
Confidence            5799999999999998  48999999875432110                                  0001      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec----cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWE----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e----~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI  450 (766)
                      +..|...+..+.    +..-+.+..++..    -.+..+++|||+++ .|.++.... ..++...+...+.  -..+..+
T Consensus        46 ~~~e~~~l~~l~----~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~-~~l~~~~~~~i~~~l~~~l~~L  119 (330)
T cd07834          46 ILREIKLLRHLR----HENIIGLLDILRPPSPEDFNDVYIVTELMET-DLHKVIKSP-QPLTDDHIQYFLYQILRGLKYL  119 (330)
T ss_pred             HHHHHHHHHhcC----CcchhhhhhhhcccCcccccceEEEecchhh-hHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            222333232221    1111111111111    11356899999986 566543211 1334443333322  2336788


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHH--HHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIRE--GLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTA  527 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~--~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~  527 (766)
                      |..|++|+|+||+||+++.  ++.++|+|||++.........  ....     ...+..+++++..... ......|+++
T Consensus       120 H~~gi~H~dlkp~nili~~--~~~~~L~dfg~~~~~~~~~~~~~~~~~-----~~~~~~y~aPE~~~~~~~~~~~sDi~s  192 (330)
T cd07834         120 HSANVIHRDLKPSNILVNS--NCDLKICDFGLARGVDPDEDEKGFLTE-----YVVTRWYRAPELLLSSSRYTKAIDIWS  192 (330)
T ss_pred             HhCCeecCCCCHHHEEEcC--CCCEEEcccCceEeecccccccccccc-----cccccCcCCceeeecccCCCcchhHHH
Confidence            9999999999999999986  799999999999987664321  0100     1123345566665544 5566789999


Q ss_pred             HHHHHHHHH
Q 004234          528 VRRTAQFFL  536 (766)
Q Consensus       528 l~~~i~~~l  536 (766)
                      +...+.+++
T Consensus       193 lG~il~~l~  201 (330)
T cd07834         193 VGCIFAELL  201 (330)
T ss_pred             HHHHHHHHH
Confidence            887666554

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.13  E-value=3.2e-10  Score=132.90  Aligned_cols=162  Identities=15%  Similarity=0.195  Sum_probs=111.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|.+|+||+++.  +|+.+||||+.|+.....+..++                                       
T Consensus        25 evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~e---------------------------------------   65 (953)
T KOG0587|consen   25 EVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELE---------------------------------------   65 (953)
T ss_pred             EEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHH---------------------------------------
Confidence            4688999999999887  69999999998876554222111                                       


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee-----ccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHHHH--HH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVESY--LE  448 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~-----e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~lv~~~--l~  448 (766)
                           -|+-++.   .+++++..-.-+.     .-.++.|||||||.|+++.|+... .....+...++..+.+.+  +.
T Consensus        66 -----ynil~~~---~~hpnv~~fyg~~~k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~  137 (953)
T KOG0587|consen   66 -----YNMLKKY---SHHPNVATFYGAFIKKDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLA  137 (953)
T ss_pred             -----HHHHHhc---cCCCCcceEEEEEEEecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHH
Confidence                 1333332   2333332211111     234678999999999999997642 233345566777766655  56


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~  515 (766)
                      ++|...++|+|++-.|||++.  +|.++|+|||...+++....+.      ...-+.+-.|+++.+.
T Consensus       138 HLH~nkviHRDikG~NiLLT~--e~~VKLvDFGvSaQldsT~grR------nT~iGtP~WMAPEVia  196 (953)
T KOG0587|consen  138 HLHNNKVIHRDIKGQNVLLTE--NAEVKLVDFGVSAQLDSTVGRR------NTFIGTPYWMAPEVIA  196 (953)
T ss_pred             HHhhcceeeecccCceEEEec--cCcEEEeeeeeeeeeecccccc------cCcCCCcccccceeee
Confidence            677888999999999999996  8999999999999998765432      2234567777776654

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.12  E-value=3.5e-10  Score=117.29  Aligned_cols=121  Identities=10%  Similarity=0.066  Sum_probs=81.4

Q ss_pred             CCCeEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeec
Q 004234          407 TTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG  481 (766)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l---~~~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG  481 (766)
                      .+..+++|||++|.+|.++...   ....++...+...+.+  ..+..+|..|++|+|++|.||+++   ++.++++|||
T Consensus        74 ~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~---~~~~~l~d~g  150 (260)
T cd08222          74 RDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLK---NNLLKIGDFG  150 (260)
T ss_pred             CCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEee---cCCEeecccC
Confidence            3557899999999999876432   1122344333333322  336788999999999999999996   4679999999


Q ss_pred             ceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          482 MMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       482 lv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      .+..+......      .....+...+++++...........|.+++...+..++
T Consensus       151 ~~~~~~~~~~~------~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~  199 (260)
T cd08222         151 VSRLLMGSCDL------ATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMC  199 (260)
T ss_pred             ceeecCCCccc------ccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHH
Confidence            88766432211      11123455677777766555566789999887665544

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.12  E-value=7.1e-11  Score=135.02  Aligned_cols=186  Identities=17%  Similarity=0.169  Sum_probs=128.1

Q ss_pred             ccccccceeEEEEEeec---Ce--eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK---GE--EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~---G~--~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +-||+||||.||+|.|+   |+  .||||+.+++....+                                         
T Consensus       116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~-----------------------------------------  154 (1039)
T KOG0199|consen  116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAI-----------------------------------------  154 (1039)
T ss_pred             HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchh-----------------------------------------
Confidence            45899999999999993   54  789999987754320                                         


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHHHH--HHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVESY--LEQI  450 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~lv~~~--l~qI  450 (766)
                      --||++|+..|-++.+    ..-|+.--|+  +.....||||.+++++|-+.... .+..+-...+...+.+..  +..+
T Consensus       155 mddflrEas~M~~L~H----~hliRLyGvV--l~qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YL  228 (1039)
T KOG0199|consen  155 MDDFLREASHMLKLQH----PHLIRLYGVV--LDQPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYL  228 (1039)
T ss_pred             HHHHHHHHHHHHhccC----cceeEEeeee--ccchhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHH
Confidence            1278999998887643    1223332333  34667899999999999885432 122223334444433332  4445


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      -..+++|||+-..|+++-.  ...++|+|||+++.|...+...   .+..-..=-+..++++-++.+-.+-..|++.+..
T Consensus       229 eskrlvHRDLAARNlllas--prtVKI~DFGLmRaLg~ned~Y---vm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGV  303 (1039)
T KOG0199|consen  229 ESKRLVHRDLAARNLLLAS--PRTVKICDFGLMRALGENEDMY---VMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGV  303 (1039)
T ss_pred             hhhhhhhhhhhhhhheecc--cceeeeecccceeccCCCCcce---EecCCCcCcccccCHhHhccccccccchhhhhhh
Confidence            5799999999999999975  6689999999999998754332   1111112235678899999988888999999988


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+-+++
T Consensus       304 TiWEMF  309 (1039)
T KOG0199|consen  304 TIWEMF  309 (1039)
T ss_pred             hHHhhh
Confidence            775554

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.11  E-value=3.2e-10  Score=123.20  Aligned_cols=181  Identities=16%  Similarity=0.209  Sum_probs=112.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||.|++|.||+|..  +|+.||||.........                                  ..      .-+
T Consensus        16 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~------~~~   55 (328)
T cd07856          16 QPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTP----------------------------------VL------AKR   55 (328)
T ss_pred             EeecccCCeEEEEEEECCCCCEEEEEEeccccccc----------------------------------ch------hHH
Confidence            7899999999999997  69999999763321100                                  00      012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +..|...+..+    .+..-+.+...+..-....+++|||+.+ ++.++..  ....+...+...+  +...+..+|..|
T Consensus        56 ~~~E~~~l~~l----~hpniv~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~--~~~~~~~~~~~~~~ql~~aL~~LH~~~  128 (328)
T cd07856          56 TYRELKLLKHL----RHENIISLSDIFISPLEDIYFVTELLGT-DLHRLLT--SRPLEKQFIQYFLYQILRGLKYVHSAG  128 (328)
T ss_pred             HHHHHHHHHhc----CCCCeeeEeeeEecCCCcEEEEeehhcc-CHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            23344434333    2222344444443334567999999854 6766532  2223332222222  223467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|++|.||+++.  ++.++++|||++...+.....         ..++..+++++.... ...++..|++++...+.
T Consensus       129 iiH~dl~p~Nili~~--~~~~~l~dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~  197 (328)
T cd07856         129 VVHRDLKPSNILINE--NCDLKICDFGLARIQDPQMTG---------YVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFA  197 (328)
T ss_pred             cccCCCCHHHEeECC--CCCEEeCccccccccCCCcCC---------CcccccccCceeeeccCCcCcHHHHHHHHHHHH
Confidence            999999999999985  889999999998876543211         122444566665433 23456679999887776


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       198 el~t  201 (328)
T cd07856         198 EMLE  201 (328)
T ss_pred             HHHh
Confidence            6653

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.11  E-value=2.6e-11  Score=146.36  Aligned_cols=184  Identities=18%  Similarity=0.119  Sum_probs=116.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEec--CCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQR--PGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqr--P~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      .-||.|-||+||.|..  +|+-.|||-.+  |+..                  +.          +..+.        + 
T Consensus      1241 ~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~------------------k~----------~~~i~--------e- 1283 (1509)
T KOG4645|consen 1241 NFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDH------------------KT----------FKLIA--------E- 1283 (1509)
T ss_pred             cccCCcceeeeEEeecCCccchhhhhhhhcCcccc------------------cc----------CcchH--------H-
Confidence            4799999999999998  69999998542  1110                  00          11111        1 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcC-CCHHHHHHHHHHHHHHHHHhC
Q 004234          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG-VDRKRLGRYAVESYLEQILSH  453 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g-~d~~~la~~lv~~~l~qI~~~  453 (766)
                           |...++.+     .+|++.-+..+.-+-.+.+|-||||+|++|.++..+.... .-..++....+-..+..+|++
T Consensus      1284 -----Em~vlE~l-----nHpNlV~YyGVEvHRekv~IFMEyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~ 1353 (1509)
T KOG4645|consen 1284 -----EMKVLEGL-----NHPNLVRYYGVEVHREKVYIFMEYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEH 1353 (1509)
T ss_pred             -----HHHHHHhc-----cCccccccCceeecHHHHHHHHHHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhc
Confidence                 22233333     2344444444444455678999999999999976543211 011122222233446778999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC---CCCCCCHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV---LVPTGDTTAVRR  530 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~---~~~~~D~~~l~~  530 (766)
                      |++|+||||.||+++.  +|-|++.|||.+..+.......- .-+.+ ..+++-||+++.+--.-   .....|++++.-
T Consensus      1354 gIVHRDIK~aNI~Ld~--~g~iK~~DFGsa~ki~~~~~~~~-~el~~-~~GT~~YMAPEvit~t~~kG~~~A~DiWslGC 1429 (1509)
T KOG4645|consen 1354 GIVHRDIKPANILLDF--NGLIKYGDFGSAVKIKNNAQTMP-GELQS-MMGTPMYMAPEVITGTKGKGHGGAADIWSLGC 1429 (1509)
T ss_pred             CceecCCCccceeeec--CCcEEeecccceeEecCchhcCC-HHHHh-hcCCchhcCchhhcccccCCCCcchhhhcccc
Confidence            9999999999999986  88999999999999877632211 11122 35789999999874221   122357777775


Q ss_pred             HHH
Q 004234          531 TAQ  533 (766)
Q Consensus       531 ~i~  533 (766)
                      .+-
T Consensus      1430 VVl 1432 (1509)
T KOG4645|consen 1430 VVL 1432 (1509)
T ss_pred             eEE
Confidence            543

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.10  E-value=3.9e-10  Score=122.63  Aligned_cols=184  Identities=16%  Similarity=0.167  Sum_probs=110.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||.|++|.||+|+.  +|+.||||..++.......                                        ...
T Consensus        11 ~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~----------------------------------------~~~   50 (337)
T cd07858          11 KPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRID----------------------------------------AKR   50 (337)
T ss_pred             EEeccCCCeEEEEEEecCCCCeEEEEEecccccccch----------------------------------------hHH
Confidence            6899999999999998  5999999987543211100                                        001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee----ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~----e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      +..|...+..+.    +..-+.+..++.    +.....+|+|||++| .|.++... ...++...+...+.+  ..+..+
T Consensus        51 ~~~E~~~l~~l~----h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~-~~~l~~~~~~~i~~qi~~aL~~L  124 (337)
T cd07858          51 TLREIKLLRHLD----HENVIAIKDIMPPPHREAFNDVYIVYELMDT-DLHQIIRS-SQTLSDDHCQYFLYQLLRGLKYI  124 (337)
T ss_pred             HHHHHHHHHhcC----CCCccchHHheecccccccCcEEEEEeCCCC-CHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHH
Confidence            122333232221    111111111111    111347999999975 56654321 122344443333322  236788


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVR  529 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~  529 (766)
                      |..|++|+|++|.||+++.  ++.++|+|||++........  ..    ........+++++.... +..+...|++++.
T Consensus       125 H~~~i~H~dlkp~Nil~~~--~~~~kL~Dfg~~~~~~~~~~--~~----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG  196 (337)
T cd07858         125 HSANVLHRDLKPSNLLLNA--NCDLKICDFGLARTTSEKGD--FM----TEYVVTRWYRAPELLLNCSEYTTAIDVWSVG  196 (337)
T ss_pred             HhCCEecCCCCHHHEEEcC--CCCEEECcCccccccCCCcc--cc----cccccccCccChHHHhcCCCCCCcccHHHHH
Confidence            9999999999999999985  88999999999887654321  10    01122445666776543 3466778999998


Q ss_pred             HHHHHHH
Q 004234          530 RTAQFFL  536 (766)
Q Consensus       530 ~~i~~~l  536 (766)
                      ..+.+++
T Consensus       197 ~il~~l~  203 (337)
T cd07858         197 CIFAELL  203 (337)
T ss_pred             HHHHHHH
Confidence            7766654

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.10  E-value=4.2e-10  Score=122.13  Aligned_cols=189  Identities=16%  Similarity=0.110  Sum_probs=111.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|.+  +|+.||||.........                             ..           ...
T Consensus        13 ~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~-----------------------------~~-----------~~~   52 (337)
T cd07852          13 QKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNA-----------------------------TD-----------AQR   52 (337)
T ss_pred             HhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcc-----------------------------hh-----------hhh
Confidence            5799999999999998  58999999763211100                             00           012


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~  452 (766)
                      +..|...+.++    .++++ +.+..++... ....++||||++| .|.+.....  ..+.......+  +...+..+|.
T Consensus        53 ~~~E~~~l~~l----~~h~ni~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH~  125 (337)
T cd07852          53 TFREIMFLQEL----GDHPNIVKLLNVIKAENDKDIYLVFEYMET-DLHAVIRAN--ILEDVHKRYIMYQLLKALKYIHS  125 (337)
T ss_pred             hhHHHHHHHHh----cCCCCccceeeeeccCCCceEEEEeccccc-CHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            23344444433    12222 2333332221 2246999999986 666643221  23333222222  2234678899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH-HcCCCCCCCCHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV-QMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~-~lG~~~~~~D~~~l~~~  531 (766)
                      .|++|+|++|.||+++.  ++.++++|||++..+.......-.... .-..+...+++++.. ..+..+...|++++...
T Consensus       126 ~~i~H~dl~p~nill~~--~~~~kl~d~g~~~~~~~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~  202 (337)
T cd07852         126 GNVIHRDLKPSNILLNS--DCRVKLADFGLARSLSELEENPENPVL-TDYVATRWYRAPEILLGSTRYTKGVDMWSVGCI  202 (337)
T ss_pred             CCeecCCCCHHHEEEcC--CCcEEEeeccchhccccccccccCcch-hcccccccccCceeeeccccccccchHHHHHHH
Confidence            99999999999999986  899999999999876543221000000 001234456666644 23445667899999887


Q ss_pred             HHHHHH
Q 004234          532 AQFFLN  537 (766)
Q Consensus       532 i~~~l~  537 (766)
                      +.+++.
T Consensus       203 l~el~t  208 (337)
T cd07852         203 LGEMLL  208 (337)
T ss_pred             HHHHHh
Confidence            776654

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.09  E-value=4.1e-10  Score=122.20  Aligned_cols=188  Identities=18%  Similarity=0.149  Sum_probs=111.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|+.  +|+.||+|+........                                  +...      .
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~----------------------------------~~~~------~   50 (334)
T cd07855          11 ENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVP----------------------------------TLAK------R   50 (334)
T ss_pred             eeeecCCCeEEEEEEEcCCCCEEEEEEeccccccc----------------------------------cchH------H
Confidence            5799999999999998  59999999874321110                                  0000      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec---cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWE---YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e---~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~  451 (766)
                      +.+|...+.++.    +..-+.+..++..   .....+++|||+.| .+.+..... ..++...+...+.  -..+..+|
T Consensus        51 ~~~e~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~i~~qi~~aL~~LH  124 (334)
T cd07855          51 TLRELKILRHFK----HDNIIAIRDILRPPGADFKDVYVVMDLMES-DLHHIIHSD-QPLTEEHIRYFLYQLLRGLKYIH  124 (334)
T ss_pred             HHHHHHHHHhcC----CCCccCHHHhccccCCCCceEEEEEehhhh-hHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            122333333332    1111222222221   22356899999976 666654221 2234433333332  23467889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRR  530 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~  530 (766)
                      ..|++|+|++|.||+++.  ++.++|+|||++..+........ .. ..-..+...+++++.... +......|++++..
T Consensus       125 ~~~ivH~dlkp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~-~~-~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~  200 (334)
T cd07855         125 SANVIHRDLKPSNLLVNE--DCELRIGDFGMARGLSSSPTEHK-YF-MTEYVATRWYRAPELLLSLPEYTTAIDMWSVGC  200 (334)
T ss_pred             HCCeecCCCCHHHEEEcC--CCcEEecccccceeecccCcCCC-cc-cccccccccccChHHhcCCcccccccchHHHHH
Confidence            999999999999999986  89999999999877643221100 00 000123344566665533 44567789999987


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       201 ~l~el~  206 (334)
T cd07855         201 IFAEML  206 (334)
T ss_pred             HHHHHH
Confidence            766654

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.09  E-value=6.6e-10  Score=118.43  Aligned_cols=193  Identities=15%  Similarity=0.107  Sum_probs=109.9

Q ss_pred             ccccccceeEEEEEee----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      ..||+|++|.||+|..    +|+.||||+..+.....                                 +.+...    
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~---------------------------------~~~~~~----   48 (316)
T cd07842           6 GCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQY---------------------------------TGISQS----   48 (316)
T ss_pred             EEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccc---------------------------------cCccHH----
Confidence            4699999999999998    37899999986543100                                 000011    


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHH--HHHHHH
Q 004234          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYA--VESYLE  448 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~---~g~d~~~la~~l--v~~~l~  448 (766)
                        +.+|+.-+..+    .+..-+.+...+..- ....++||||+++..+..+.....   ..+....+...+  +-..+.
T Consensus        49 --~~~e~~~l~~l----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~  122 (316)
T cd07842          49 --ACREIALLREL----KHENVVSLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVH  122 (316)
T ss_pred             --HHHHHHHHHhc----CCCCccceEEEEeCCCCceEEEEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHH
Confidence              12233323332    222223333333221 145799999998743332221111   123333333322  223467


Q ss_pred             HHHhCCccccCCCCCcEEEee--cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCH
Q 004234          449 QILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDT  525 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~--~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~  525 (766)
                      .+|..|++|+|++|.||+++.  ..++.++++|||++..+.........   ..-......+++++....+ ......|+
T Consensus       123 ~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Dv  199 (316)
T cd07842         123 YLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLAD---LDPVVVTIWYRAPELLLGARHYTKAIDI  199 (316)
T ss_pred             HHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccc---cCCccccccccCHHHHhCCCCCCcHHHH
Confidence            889999999999999999973  11578999999998876543221000   0000123345667765432 34566799


Q ss_pred             HHHHHHHHHHHH
Q 004234          526 TAVRRTAQFFLN  537 (766)
Q Consensus       526 ~~l~~~i~~~l~  537 (766)
                      +++...+.+++.
T Consensus       200 ~slG~~l~~l~~  211 (316)
T cd07842         200 WAIGCIFAELLT  211 (316)
T ss_pred             HHHHHHHHHHHh
Confidence            999877766553

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.08  E-value=4.2e-10  Score=121.92  Aligned_cols=201  Identities=11%  Similarity=0.034  Sum_probs=111.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+..........                        ....+.+    ...+.+
T Consensus        15 ~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~------------------------~~~~~~~----~~~~~~   66 (335)
T PTZ00024         15 AHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTK------------------------DRQLVGM----CGIHFT   66 (335)
T ss_pred             hcccCCCceeEEEEEECCCCCeEEEEEeecccccccccc------------------------chhhhcc----cccchh
Confidence            5699999999999998  599999998753221110000                        0000000    001123


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|...+..+.    + +++ .+...+ ......+++|||++| .+.+.... ...++...+...+.+  ..+..+|..
T Consensus        67 ~~~E~~~l~~l~----h-~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~~-~~~~~~~~~~~~~~ql~~aL~~LH~~  138 (335)
T PTZ00024         67 TLRELKIMNEIK----H-ENIMGLVDVY-VEGDFINLVMDIMAS-DLKKVVDR-KIRLTESQVKCILLQILNGLNVLHKW  138 (335)
T ss_pred             HHHHHHHHHhCC----C-cceeeeeEEE-ecCCcEEEEEecccc-CHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            344554444442    2 222 222222 234567999999986 56654321 122344433333322  237788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHH--------HHHHHHHhhcCHHHHHHHHHHcC-CCCCCCC
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL--------LEAFYGIYEKDADKVLQAMVQMG-VLVPTGD  524 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l--------~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D  524 (766)
                      |++|+|++|+||+++.  ++.++++|||++..+....-...        .............+++++....+ ..+...|
T Consensus       139 ~i~H~dl~~~nill~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  216 (335)
T PTZ00024        139 YFMHRDLSPANIFINS--KGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVD  216 (335)
T ss_pred             CeecccccHHHeEECC--CCCEEECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHH
Confidence            9999999999999986  78999999999987651100000        00000000112334555554322 2355678


Q ss_pred             HHHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFLN  537 (766)
Q Consensus       525 ~~~l~~~i~~~l~  537 (766)
                      ++++...+.+++.
T Consensus       217 v~slG~~l~el~t  229 (335)
T PTZ00024        217 MWSVGCIFAELLT  229 (335)
T ss_pred             HHHHHHHHHHHHh
Confidence            8888877666553

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.07  E-value=6.8e-10  Score=121.14  Aligned_cols=121  Identities=14%  Similarity=0.113  Sum_probs=74.9

Q ss_pred             CeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceecc
Q 004234          409 PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  486 (766)
Q Consensus       409 ~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L  486 (766)
                      ..+++|||+++ .+.+...  ...+....+...+  +-..+..+|..|++|+|+||+||+++. .++.++++|||++..+
T Consensus        90 ~~~lv~e~~~~-~L~~~~~--~~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~-~~~~~kl~dfg~~~~~  165 (342)
T cd07854          90 SVYIVQEYMET-DLANVLE--QGPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINT-EDLVLKIGDFGLARIV  165 (342)
T ss_pred             eEEEEeecccc-cHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcC-CCceEEECCcccceec
Confidence            36899999986 6655432  2223333333222  223467789999999999999999974 3567999999999876


Q ss_pred             ChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHHHHH
Q 004234          487 SPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       487 ~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i~~~l  536 (766)
                      .......-   ......+...+++++...- ......+|++++...+.+++
T Consensus       166 ~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~  213 (342)
T cd07854         166 DPHYSHKG---YLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEML  213 (342)
T ss_pred             CCcccccc---ccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHH
Confidence            54322100   0000112334566665432 23455689999987776654

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.06  E-value=1.2e-10  Score=121.29  Aligned_cols=87  Identities=18%  Similarity=0.224  Sum_probs=65.4

Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004234          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (766)
Q Consensus       445 ~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D  524 (766)
                      ..++.+|..|+.|+|+||||++|+.  +-.++++|||+++.-+.+++.++..-++.-..+-+    +.+....-.+...|
T Consensus       167 RGLKYLHsA~ILHRDIKPGNLLVNS--NCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAP----EiLMGaRhYs~AvD  240 (449)
T KOG0664|consen  167 RGLKYLHTANILHRDIKPGNLLVNS--NCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAP----ELLMGARRYTGAVD  240 (449)
T ss_pred             hhhHHHhhcchhhccCCCccEEecc--CceEEecccccccccchhhhhhhHHHHHHHHhccH----HHhhcchhhcCccc
Confidence            3478889999999999999999985  77899999999999999888888766555333333    33333333456679


Q ss_pred             HHHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFLN  537 (766)
Q Consensus       525 ~~~l~~~i~~~l~  537 (766)
                      ++++.-...+++.
T Consensus       241 iWSVGCIFaELLg  253 (449)
T KOG0664|consen  241 IWSVGCIFAELLQ  253 (449)
T ss_pred             eehhhHHHHHHHh
Confidence            9998876666554

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.05  E-value=5.8e-10  Score=118.49  Aligned_cols=191  Identities=17%  Similarity=0.162  Sum_probs=126.1

Q ss_pred             hccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004234          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (766)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (766)
                      ++||- +.+|.|.||.|-.++-  +|+.+|+||.+..+--.                                -+|++.+
T Consensus       168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviia--------------------------------kdEVAHT  215 (516)
T KOG0690|consen  168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIA--------------------------------KDEVAHT  215 (516)
T ss_pred             chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheee--------------------------------hHHhhhh
Confidence            34554 6899999999999988  69999999986543111                                0222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhh-hhhhcCCCHHHHHHHHHHHHHHH
Q 004234          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQ-SLDELGVDRKRLGRYAVESYLEQ  449 (766)
Q Consensus       371 l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~-~l~~~g~d~~~la~~lv~~~l~q  449 (766)
                      +       .|.+-+...++     |.+..-+.--+-..+.+.||||..|+.|--.. .-+....++.+.-..-+-..+..
T Consensus       216 l-------TE~RVL~~~~H-----PFLt~LKYsFQt~drlCFVMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~Y  283 (516)
T KOG0690|consen  216 L-------TENRVLQNCRH-----PFLTSLKYSFQTQDRLCFVMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGY  283 (516)
T ss_pred             h-------hHHHHHHhccC-----cHHHHhhhhhccCceEEEEEEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhh
Confidence            1       22232222211     11111111112234679999999999876422 22223345555555555567899


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceec-cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS-ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~-L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      +|..+++.+|+|-.|++++.  ||+|++.|||+++. ++....       .....+.+++++++.++-.-.....|-+.+
T Consensus       284 LHs~~ivYRDlKLENLlLDk--DGHIKitDFGLCKE~I~~g~t-------~kTFCGTPEYLAPEVleDnDYgraVDWWG~  354 (516)
T KOG0690|consen  284 LHSRNIVYRDLKLENLLLDK--DGHIKITDFGLCKEEIKYGDT-------TKTFCGTPEYLAPEVLEDNDYGRAVDWWGV  354 (516)
T ss_pred             hhhCCeeeeechhhhheecc--CCceEeeecccchhcccccce-------eccccCChhhcCchhhccccccceeehhhh
Confidence            99999999999999999986  99999999999975 222111       123467999999999986666677788888


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+++++.
T Consensus       355 GVVMYEMmC  363 (516)
T KOG0690|consen  355 GVVMYEMMC  363 (516)
T ss_pred             hHHHHHHHh
Confidence            887777653

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.05  E-value=1.5e-09  Score=118.32  Aligned_cols=186  Identities=19%  Similarity=0.201  Sum_probs=113.7

Q ss_pred             cccccccceeEEEEEee-c--CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARL-K--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l-~--G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      ...||+|+||+||.+.. .  ...+|+|+........                            ..        .+..|
T Consensus        23 ~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~----------------------------~~--------~l~~E   66 (322)
T KOG1164|consen   23 GKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSK----------------------------PS--------VLKIE   66 (322)
T ss_pred             eeeccccCCceEEEEEecCCCCeeEEEEEEEecccCC----------------------------Cc--------cchhH
Confidence            36899999999999998 3  3589999874321110                            00        11112


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeecc-CC--CeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHHHH--HH
Q 004234          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEY-TT--PQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVESY--LE  448 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-st--~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~~~--l~  448 (766)
                      .+.      +..+..   ....-.+|.+++.. .+  -+++||+.+ |.+|.++..... ..++....+..+++..  ++
T Consensus        67 ~~v------l~~l~~---~~~~~~~~~~~~~G~~~~~~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~  136 (322)
T KOG1164|consen   67 IQV------LKKLEK---KNGPSHFPKLLDHGRSTEDFNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALE  136 (322)
T ss_pred             HHH------HHHHhh---hcCCCCCCEEEEeccCCCceeEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHH
Confidence            222      222221   11234677777655 22  469999976 888998764332 4466666666666554  89


Q ss_pred             HHHhCCccccCCCCCcEEEeecC---CCcEEEEeeccee--ccChhhHHHHHH--HHHHHhhcCHHHHHHHHHHcCCCCC
Q 004234          449 QILSHGFFHADPHPGNIAVDDVN---GGRLIFYDFGMMG--SISPNIREGLLE--AFYGIYEKDADKVLQAMVQMGVLVP  521 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~---~g~l~LiDFGlv~--~L~~~~r~~l~~--l~~a~~~~D~~~v~~~l~~lG~~~~  521 (766)
                      .+|+.||+|||+||+|+++....   ...+.++|||+++  .+..........  -..+...++..++....-......+
T Consensus       137 ~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r  216 (322)
T KOG1164|consen  137 DLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGR  216 (322)
T ss_pred             HHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCC
Confidence            99999999999999999997521   1469999999999  432222111000  0012334666777666555555556


Q ss_pred             CCCHHHHH
Q 004234          522 TGDTTAVR  529 (766)
Q Consensus       522 ~~D~~~l~  529 (766)
                      ..|..++-
T Consensus       217 ~DDles~~  224 (322)
T KOG1164|consen  217 RDDLESLF  224 (322)
T ss_pred             chhhhhHH
Confidence            66766643

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.05  E-value=5.1e-10  Score=127.32  Aligned_cols=182  Identities=18%  Similarity=0.196  Sum_probs=122.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..||+|.||.|..|+.  +|.+||||+....--                             |....     ..+.+|  
T Consensus        62 ~tig~g~f~~V~La~~~~t~~~VaiK~idkt~l-----------------------------n~~~~-----~k~~re--  105 (596)
T KOG0586|consen   62 KTIGKGNFAKVKLARHILTGTEVAIKIIDKTQL-----------------------------NPSKR-----QKLGRE--  105 (596)
T ss_pred             eeeccceeEEEEeeEecCCCceEEEEEehhccc-----------------------------ChHHH-----HHHHHH--
Confidence            5699999999999998  799999998722111                             11110     112222  


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH---HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE---SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~---~~l~qI~~  452 (766)
                          .+-|..+     ++|++ .+-.|+ +.....+|||||+-|+.+.++.  ...+-+....++....   ..++.+|.
T Consensus       106 ----v~imk~l-----~HPnIvkl~~v~-~t~~~lylV~eya~~ge~~~yl--~~~gr~~e~~ar~~F~q~vsaveYcH~  173 (596)
T KOG0586|consen  106 ----VDIMKSL-----NHPNIVKLFSVI-ETEATLYLVMEYASGGELFDYL--VKHGRMKEKEARAKFRQIVSAVEYCHS  173 (596)
T ss_pred             ----HHHHHhc-----CCcceeeeeeee-eecceeEEEEEeccCchhHHHH--HhcccchhhhhhhhhHHHHHHHHHHhh
Confidence                3333322     22333 333333 2345679999999999998864  3344444444444433   34788899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCCHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRT  531 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~-lG~~~~~~D~~~l~~~  531 (766)
                      ++|+|+|+|..||+++.  +..++|.|||+...++...   +.+    ...+.+.++++++.. .....|..|.+.+...
T Consensus       174 k~ivHrdLk~eNilL~~--~mnikIaDfgfS~~~~~~~---~lq----t~cgsppyAaPEl~~g~~y~gpe~D~Wslgvv  244 (596)
T KOG0586|consen  174 KNIVHRDLKAENILLDE--NMNIKIADFGFSTFFDYGL---MLQ----TFCGSPPYAAPELFNGKKYDGPEVDIWSLGVV  244 (596)
T ss_pred             cceeccccchhhccccc--ccceeeeccccceeecccc---ccc----ccCCCCCccChHhhcCcccCCcceehhhhhhh
Confidence            99999999999999985  6779999999999987532   222    345678888888775 4566788899998877


Q ss_pred             HHHHHH
Q 004234          532 AQFFLN  537 (766)
Q Consensus       532 i~~~l~  537 (766)
                      ++.++.
T Consensus       245 ly~LV~  250 (596)
T KOG0586|consen  245 LYALVE  250 (596)
T ss_pred             heeeee
Confidence            665543

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=1.6e-10  Score=139.11  Aligned_cols=129  Identities=19%  Similarity=0.169  Sum_probs=85.1

Q ss_pred             eEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH---HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceecc
Q 004234          410 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE---SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  486 (766)
Q Consensus       410 ~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~---~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L  486 (766)
                      .|+-||||+-..+.++..-....-++ ..+..+++   ..+.+||..|++|||+||.||+++.  ++.|+|.|||++..+
T Consensus       671 LYIQMEyCE~~ll~~iI~~N~~~~~~-d~~wrLFreIlEGLaYIH~~giIHRDLKP~NIFLd~--~~~VKIGDFGLAt~~  747 (1351)
T KOG1035|consen  671 LYIQMEYCEKTLLRDIIRRNHFNSQR-DEAWRLFREILEGLAYIHDQGIIHRDLKPRNIFLDS--RNSVKIGDFGLATDL  747 (1351)
T ss_pred             EEEEHhhhhhhHHHHHHHhcccchhh-HHHHHHHHHHHHHHHHHHhCceeeccCCcceeEEcC--CCCeeecccccchhh
Confidence            48999999999888876433322122 22333333   2377899999999999999999985  889999999999874


Q ss_pred             ChhhHHHHHHH-HHHH-----------hhcCHHHHHHHHHHcC---CCCCCCCHHHHHHHHHHHHHHHHH
Q 004234          487 SPNIREGLLEA-FYGI-----------YEKDADKVLQAMVQMG---VLVPTGDTTAVRRTAQFFLNSFEE  541 (766)
Q Consensus       487 ~~~~r~~l~~l-~~a~-----------~~~D~~~v~~~l~~lG---~~~~~~D~~~l~~~i~~~l~~~~~  541 (766)
                      -.......... +...           .-|+.-|++|++..--   -...+.|++++.-.+-+++-+|..
T Consensus       748 ~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yPF~T  817 (1351)
T KOG1035|consen  748 KENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYPFGT  817 (1351)
T ss_pred             hhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhccCCc
Confidence            32111111000 0000           1244567888887643   356788999999877766666543

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.04  E-value=6.1e-10  Score=116.12  Aligned_cols=197  Identities=18%  Similarity=0.237  Sum_probs=130.5

Q ss_pred             hhhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004234          291 DVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (766)
Q Consensus       291 eiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (766)
                      +.|...++ +-+|.|..+.|-|+..  .|.+.|+|++--.....                            ..+-..++
T Consensus        14 ~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~----------------------------~~e~~~~~   65 (411)
T KOG0599|consen   14 GFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTE----------------------------SGETPYEM   65 (411)
T ss_pred             hHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEeccccc----------------------------CCccHHHH
Confidence            45666665 6789999999999988  58999999873222111                            01114455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCH---HHHHHHHH
Q 004234          368 ASVLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR---KRLGRYAV  443 (766)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~---~~la~~lv  443 (766)
                      .+...+|++..+.          ..++|++ .+-.+| +-.+-.+||.|.++-+.|-|+.... -.++.   ..+.+.++
T Consensus        66 ~EaT~~Ev~ILRq----------v~GHP~II~l~D~y-es~sF~FlVFdl~prGELFDyLts~-VtlSEK~tR~iMrqlf  133 (411)
T KOG0599|consen   66 REATRQEISILRQ----------VMGHPYIIDLQDVY-ESDAFVFLVFDLMPRGELFDYLTSK-VTLSEKETRRIMRQLF  133 (411)
T ss_pred             HHHHHHHHHHHHH----------hcCCCcEEEeeeec-cCcchhhhhhhhcccchHHHHhhhh-eeecHHHHHHHHHHHH
Confidence            5555666554332          2344543 344444 3345568999999999999875421 11222   23333333


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC----
Q 004234          444 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL----  519 (766)
Q Consensus       444 ~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~----  519 (766)
                      +. ...+|..+++|+|+||.|||+++  +.++++.|||.+.++.+..+  +.+     +.+++.+++++.++-...    
T Consensus       134 eg-VeylHa~~IVHRDLKpENILldd--n~~i~isDFGFa~~l~~Gek--Lre-----lCGTPgYLAPEtikC~m~e~~p  203 (411)
T KOG0599|consen  134 EG-VEYLHARNIVHRDLKPENILLDD--NMNIKISDFGFACQLEPGEK--LRE-----LCGTPGYLAPETIKCSMYENHP  203 (411)
T ss_pred             HH-HHHHHHhhhhhcccChhheeecc--ccceEEeccceeeccCCchh--HHH-----hcCCCcccChhheeeecccCCC
Confidence            32 56688999999999999999986  78999999999999988765  222     357999999998864332    


Q ss_pred             --CCCCCHHHHHHHHHHHHH
Q 004234          520 --VPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       520 --~~~~D~~~l~~~i~~~l~  537 (766)
                        +...|+++....++-++.
T Consensus       204 GYs~EVD~Wa~GVImyTLLa  223 (411)
T KOG0599|consen  204 GYSKEVDEWACGVIMYTLLA  223 (411)
T ss_pred             CccchhhHHHHHHHHHHHHc
Confidence              234577887777666554

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.03  E-value=6.9e-10  Score=117.85  Aligned_cols=189  Identities=19%  Similarity=0.205  Sum_probs=123.6

Q ss_pred             cccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      .+-+|+|.+|.|-.++-  +|.++||||....                       |.             ..+..+.+|+
T Consensus        83 ~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq-----------------------~g-------------HsR~RvfREV  126 (463)
T KOG0607|consen   83 SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQ-----------------------PG-------------HSRSRVFREV  126 (463)
T ss_pred             HHHhcCccceeeeeeeeeccchhhhhhhhhcC-----------------------Cc-------------hHHHHHHHHH
Confidence            35799999999999987  7999999987211                       10             1123344444


Q ss_pred             HHHHHH---HHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHH--HHHHHHHHHHHHH
Q 004234          376 DYTQEA---ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR--LGRYAVESYLEQI  450 (766)
Q Consensus       376 Df~~EA---~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~--la~~lv~~~l~qI  450 (766)
                      +.....   .|+..+-+.|.+             .++.|||||-|.|++|-..+.. ..-++..+  ....-+...|..+
T Consensus       127 e~f~~Cqgh~nilqLiefFEd-------------d~~FYLVfEKm~GGplLshI~~-~~~F~E~EAs~vvkdia~aLdFl  192 (463)
T KOG0607|consen  127 ETFYQCQGHKNILQLIEFFED-------------DTRFYLVFEKMRGGPLLSHIQK-RKHFNEREASRVVKDIASALDFL  192 (463)
T ss_pred             HHHHHhcCCccHHHHHHHhcc-------------cceEEEEEecccCchHHHHHHH-hhhccHHHHHHHHHHHHHHHHHH
Confidence            443333   366666666655             4678999999999998764321 11122221  2222345668899


Q ss_pred             HhCCccccCCCCCcEEEeecCC-CcEEEEeecceecc------ChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CC
Q 004234          451 LSHGFFHADPHPGNIAVDDVNG-GRLIFYDFGMMGSI------SPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GV  518 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~-g~l~LiDFGlv~~L------~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-----G~  518 (766)
                      |..||-|+|+||.|||..+++. ..++|+||-+...+      ++-..-.+     ..--+..++|++++.+.     -+
T Consensus       193 H~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L-----~tPvGSAEfMAPEVVd~fv~qA~~  267 (463)
T KOG0607|consen  193 HTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPEL-----LTPVGSAEFMAPEVVDVFVDQATF  267 (463)
T ss_pred             hhcCcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccc-----cCcccchhhcchhHHhhhcccccc
Confidence            9999999999999999986221 25899999776543      11111111     11236778888887763     34


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHH
Q 004234          519 LVPTGDTTAVRRTAQFFLNSFEE  541 (766)
Q Consensus       519 ~~~~~D~~~l~~~i~~~l~~~~~  541 (766)
                      .....|.+++...++.++..|..
T Consensus       268 YDKrCDlwSLGvIlYImLsGYpP  290 (463)
T KOG0607|consen  268 YDKRCDLWSLGVILYIMLSGYPP  290 (463)
T ss_pred             ccccccHHHHHHHHHHHHhCCCC
Confidence            45667999999999999988853

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.03  E-value=9.7e-10  Score=132.95  Aligned_cols=140  Identities=20%  Similarity=0.228  Sum_probs=90.5

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +-+|.|++|+||+|+. +|+.||+||++|-..-.    ..|...+.                         .+|.     
T Consensus       704 ~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WE----fYI~~q~~-------------------------~RLk-----  749 (974)
T KOG1166|consen  704 KEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWE----FYICLQVM-------------------------ERLK-----  749 (974)
T ss_pred             eeeccccceEEEEeecCCCcEEEEEeecCCCcee----eeehHHHH-------------------------Hhhc-----
Confidence            3599999999999999 79999999998865433    22222221                         1111     


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      .....-+..|...          .   -+.+..+||+||.+=++|-|+.. .....+..-++-..++  .+++++|.+||
T Consensus       750 ~~~~~~~~~~~~a----------~---~~~~~S~lv~ey~~~Gtlld~~N-~~~~m~e~lv~~~~~qml~ive~lH~~~I  815 (974)
T KOG1166|consen  750 PQMLPSIMHISSA----------H---VFQNASVLVSEYSPYGTLLDLIN-TNKVMDEYLVMFFSCQMLRIVEHLHAMGI  815 (974)
T ss_pred             hhhhcchHHHHHH----------H---ccCCcceeeeeccccccHHHhhc-cCCCCCchhhhHHHHHHHHHHHHHHhcce
Confidence            0000001111111          1   13677899999999999998765 2222333333333333  34899999999


Q ss_pred             cccCCCCCcEEEeecC-----CCcEEEEeecceecc
Q 004234          456 FHADPHPGNIAVDDVN-----GGRLIFYDFGMMGSI  486 (766)
Q Consensus       456 fHaDpHPGNILV~~~~-----~g~l~LiDFGlv~~L  486 (766)
                      +||||||.|++++...     ..-|+|||||.+-.+
T Consensus       816 IHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm  851 (974)
T KOG1166|consen  816 IHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDM  851 (974)
T ss_pred             ecccCCcceeEeecccCCCCcccceEEEecccceee
Confidence            9999999999997421     235999999987544

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=99.01  E-value=4.7e-09  Score=110.63  Aligned_cols=180  Identities=22%  Similarity=0.275  Sum_probs=122.3

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      ++||-|.-+-||.|.. +|.++|||.-|-|-. .+..    .+.--..+..      .....|..+-   +...      
T Consensus        97 ~~IGvGKEsdVY~~~~~~g~~~~vKfHR~Grt-sFrk----vk~~R~y~~~------~~h~sWl~~s---Rl~A------  156 (304)
T COG0478          97 TKIGVGKESDVYVAIDPKGRKVAVKFHRLGRT-SFRK----VKRNRDYLAD------KEHGSWLYVS---RLAA------  156 (304)
T ss_pred             cccccCccceEEEEECCCCCEEEEEEeecCch-hhhh----hcchhhhhcc------ccCcchhhhH---HHHH------
Confidence            6899999999999999 799999999988832 2111    1111111110      0111232221   1122      


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFH  457 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~GffH  457 (766)
                      .+|-..+.++.     ..++.||+++.  -+++++||||++|.+|..+.-   ...+...+...+++.+-.. .+.|++|
T Consensus       157 ~rEf~~L~~L~-----~~G~~VP~P~~--~nRHaVvMe~ieG~eL~~~r~---~~en~~~il~~il~~~~~~-~~~GiVH  225 (304)
T COG0478         157 EREFEALQRLY-----PEGVKVPKPIA--WNRHAVVMEYIEGVELYRLRL---DVENPDEILDKILEEVRKA-YRRGIVH  225 (304)
T ss_pred             HHHHHHHHHhh-----hcCCCCCCccc--cccceeeeehcccceeecccC---cccCHHHHHHHHHHHHHHH-HHcCccc
Confidence            23344444543     23588999995  478899999999999887531   2245667777777665444 4999999


Q ss_pred             cCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004234          458 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  518 (766)
Q Consensus       458 aDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~  518 (766)
                      +|+.+=||+|++  ||.+++|||-.+...+.+.-..+       +.+|.+.++..+.+-..
T Consensus       226 GDlSefNIlV~~--dg~~~vIDwPQ~v~~~hp~a~e~-------l~RDv~nii~yFrrky~  277 (304)
T COG0478         226 GDLSEFNILVTE--DGDIVVIDWPQAVPISHPDAEEL-------LERDVENIIKYFRRKYG  277 (304)
T ss_pred             cCCchheEEEec--CCCEEEEeCcccccCCCCCHHHH-------HHhHHHHHHHHHHHhcc
Confidence            999999999996  89999999999998877665443       35788888888877543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.01  E-value=1.8e-09  Score=133.84  Aligned_cols=170  Identities=14%  Similarity=0.169  Sum_probs=107.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|++  +|+.||||..+.... .                           .                 
T Consensus       696 ~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~---------------------------~-----------------  730 (968)
T PLN00113        696 NVISRGKKGASYKGKSIKNGMQFVVKEINDVNS-I---------------------------P-----------------  730 (968)
T ss_pred             cEEccCCCeeEEEEEECCCCcEEEEEEccCCcc-c---------------------------c-----------------
Confidence            6899999999999997  689999997632100 0                           0                 


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH--
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL--  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~--  451 (766)
                       ..|.+.+.++     ++++| .+-.++ ......++||||++|++|.++..  .  .+.......+  +...+..+|  
T Consensus       731 -~~~~~~l~~l-----~HpnIv~~~~~~-~~~~~~~lv~Ey~~~g~L~~~l~--~--l~~~~~~~i~~~ia~~L~yLH~~  799 (968)
T PLN00113        731 -SSEIADMGKL-----QHPNIVKLIGLC-RSEKGAYLIHEYIEGKNLSEVLR--N--LSWERRRKIAIGIAKALRFLHCR  799 (968)
T ss_pred             -HHHHHHHhhC-----CCCCcceEEEEE-EcCCCCEEEEeCCCCCcHHHHHh--c--CCHHHHHHHHHHHHHHHHHhccC
Confidence             0011112222     23332 222222 23456799999999999998753  1  2322222222  223466677  


Q ss_pred             -hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          452 -SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       452 -~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                       ..+++|+|+||.||+++.  ++..++ +||..+.......          ..+.+.++++++...+..+...|++++..
T Consensus       800 ~~~~iiH~dlkp~Nil~~~--~~~~~~-~~~~~~~~~~~~~----------~~~t~~y~aPE~~~~~~~~~~sDv~S~Gv  866 (968)
T PLN00113        800 CSPAVVVGNLSPEKIIIDG--KDEPHL-RLSLPGLLCTDTK----------CFISSAYVAPETRETKDITEKSDIYGFGL  866 (968)
T ss_pred             CCCCeecCCCCHHhEEECC--CCceEE-EeccccccccCCC----------ccccccccCcccccCCCCCcccchhhHHH
Confidence             569999999999999985  444443 3665544322211          12356788998888777888899999998


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       867 vl~el~t  873 (968)
T PLN00113        867 ILIELLT  873 (968)
T ss_pred             HHHHHHh
Confidence            8877764

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.01  E-value=2.9e-09  Score=117.52  Aligned_cols=186  Identities=20%  Similarity=0.199  Sum_probs=135.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..+|.|+||.||-++-  +|+-+|.|-.          |-+-++       +                      =..|.-
T Consensus       191 RvlGkGGFGEV~acqvraTGKMYAcKkL----------~KKRiK-------k----------------------r~ge~m  231 (591)
T KOG0986|consen  191 RVLGKGGFGEVCACQVRATGKMYACKKL----------DKKRIK-------K----------------------RKGETM  231 (591)
T ss_pred             EEEecccccceeEEEEecchhhHHHHHH----------HHHHHH-------H----------------------hhhhHH
Confidence            5799999999999987  6888887743          111110       0                      012333


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee-ccCCCeEEEEeecCCCChhh-hhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINR-IQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~-e~st~~vLVMEyieG~~L~d-~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      -.+|..++++....      +.|--.|. +-.+..+|||..|+|+.|.- +-.+...|++..+..-..++  .-++.+|+
T Consensus       232 aLnEk~iL~kV~s~------FiVslaYAfeTkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~  305 (591)
T KOG0986|consen  232 ALNEKQILEKVSSP------FIVSLAYAFETKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHR  305 (591)
T ss_pred             hhHHHHHHHHhccC------cEEEEeeeecCCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHh
Confidence            35666666665432      22333332 33456799999999999874 33455567777666555544  44889999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      .+++.||+||.|||+++  .|++.|.|.|++..+++.....      + --++..+|++++++-+..+-..|-.++.-.+
T Consensus       306 ~~iVYRDLKPeNILLDd--~GhvRISDLGLAvei~~g~~~~------~-rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCll  376 (591)
T KOG0986|consen  306 RRIVYRDLKPENILLDD--HGHVRISDLGLAVEIPEGKPIR------G-RVGTVGYMAPEVLQNEVYDFSPDWFSLGCLL  376 (591)
T ss_pred             cceeeccCChhheeecc--CCCeEeeccceEEecCCCCccc------c-ccCcccccCHHHHcCCcccCCccHHHHHhHH
Confidence            99999999999999996  8999999999999998865421      1 2478999999999999988899999999998


Q ss_pred             HHHHHH
Q 004234          533 QFFLNS  538 (766)
Q Consensus       533 ~~~l~~  538 (766)
                      ++++..
T Consensus       377 Yemi~G  382 (591)
T KOG0986|consen  377 YEMIAG  382 (591)
T ss_pred             HHHHcc
Confidence            888764

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.00  E-value=8.1e-10  Score=121.03  Aligned_cols=163  Identities=17%  Similarity=0.286  Sum_probs=108.2

Q ss_pred             ccCCCHHHHHHHHhhhhCCCCCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEee-c----CeeEEEEEec
Q 004234          251 VDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-K----GEEVVVKVQR  325 (766)
Q Consensus       251 ~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l-~----G~~VAVKVqr  325 (766)
                      .|+.++...+++.+|+..+|-..                 ..|.  ..++||.|+|+.||+|++ .    .+.||+|-.+
T Consensus        13 ~d~~~~~k~ee~~~l~q~~p~~~-----------------~~~~--~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~   73 (418)
T KOG1167|consen   13 SDISAEDKGEEIEQLRQDIPFIS-----------------NAYK--VVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIY   73 (418)
T ss_pred             hhcchhhhhhHHHHHHhhhhhhh-----------------hhhh--hhccccccchhhhhhhhHhhhccccceEeeeecc
Confidence            35555555577777776655322                 2221  336899999999999998 3    5789999764


Q ss_pred             CCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCCcccccee
Q 004234          326 PGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA---NAELFASNFKDMDYVKVPTI  402 (766)
Q Consensus       326 P~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~---Nl~~f~~~f~~~~~V~vP~v  402 (766)
                      +-...                              .        .+..|+.+..++.   |+......++.         
T Consensus        74 ~ts~p------------------------------~--------ri~~El~~L~~~gG~~ni~~~~~~~rn---------  106 (418)
T KOG1167|consen   74 RTSSP------------------------------S--------RILNELEMLYRLGGSDNIIKLNGCFRN---------  106 (418)
T ss_pred             cccCc------------------------------h--------HHHHHHHHHHHhccchhhhcchhhhcc---------
Confidence            32211                              1        2334555555543   44444444433         


Q ss_pred             eeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHH--HHHHHhCCccccCCCCCcEEEeecCCCcEEEEee
Q 004234          403 FWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESY--LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDF  480 (766)
Q Consensus       403 ~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~--l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDF  480 (766)
                          .+..++||||++-....++..    +++...+-..+...+  +.++|..|++|+|+||+|++.+. ..++-.|+||
T Consensus       107 ----nd~v~ivlp~~~H~~f~~l~~----~l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~-~t~rg~LvDF  177 (418)
T KOG1167|consen  107 ----NDQVAIVLPYFEHDRFRDLYR----SLSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNR-RTQRGVLVDF  177 (418)
T ss_pred             ----CCeeEEEecccCccCHHHHHh----cCCHHHHHHHHHHHHHHhhhhhccCccccCCCcccccccc-ccCCceEEec
Confidence                456789999999888777642    234444444444433  77889999999999999999986 5788999999


Q ss_pred             cceeccCh
Q 004234          481 GMMGSISP  488 (766)
Q Consensus       481 Glv~~L~~  488 (766)
                      |++...+.
T Consensus       178 gLA~~~d~  185 (418)
T KOG1167|consen  178 GLAQRYDG  185 (418)
T ss_pred             hhHHHHHh
Confidence            99986433

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.00  E-value=2.7e-10  Score=123.93  Aligned_cols=186  Identities=19%  Similarity=0.143  Sum_probs=117.6

Q ss_pred             ccccccceeEEEEEeecC--eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKG--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G--~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..+|.||||.|-.|..+|  +.+||||.+.++--+ ..|++.-     +.++..-...+.   +.               
T Consensus       355 ~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQ-dDDvect-----m~EKrvLAL~~k---pp---------------  410 (683)
T KOG0696|consen  355 MVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQ-DDDVECT-----MVEKRVLALPGK---PP---------------  410 (683)
T ss_pred             EEeccCccceeeeecccCcchhhhhhhhccceeee-cCcccce-----ehhhhheecCCC---Cc---------------
Confidence            689999999999999954  679999998775322 1111110     000000000000   00               


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhh-hhhhhhcCCCHHHHHHHHHHHHHHHHHhCCc
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINR-IQSLDELGVDRKRLGRYAVESYLEQILSHGF  455 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d-~~~l~~~g~d~~~la~~lv~~~l~qI~~~Gf  455 (766)
                            -+..+...|+.             -.+.+.||||+.|+.|-- +++...........-..-+...|--+|..|+
T Consensus       411 ------FL~qlHScFQT-------------mDRLyFVMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~kgI  471 (683)
T KOG0696|consen  411 ------FLVQLHSCFQT-------------MDRLYFVMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSKGI  471 (683)
T ss_pred             ------hHHHHHHHhhh-------------hhheeeEEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcCCe
Confidence                  01112222222             246789999999998875 3333332222222222233344566889999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceecc--ChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSI--SPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L--~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      +.||+|-.|||++.  +|+|+|.||||+..-  +..+.        ....+++++++++++...-.....|-+++...++
T Consensus       472 iYRDLKLDNvmLd~--eGHiKi~DFGmcKEni~~~~TT--------kTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLy  541 (683)
T KOG0696|consen  472 IYRDLKLDNVMLDS--EGHIKIADFGMCKENIFDGVTT--------KTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLY  541 (683)
T ss_pred             eeeeccccceEecc--CCceEeeecccccccccCCcce--------eeecCCCcccccceEEecccccchhHHHHHHHHH
Confidence            99999999999986  999999999999752  22221        1235799999999998877777889999988776


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       542 Emla  545 (683)
T KOG0696|consen  542 EMLA  545 (683)
T ss_pred             HHHc
Confidence            6653

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.00  E-value=9e-10  Score=125.91  Aligned_cols=122  Identities=18%  Similarity=0.184  Sum_probs=86.9

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCC-CHHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceec
Q 004234          407 TTPQILTMEYVPGIKINRIQSLDELGV-DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  485 (766)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~-d~~~la~~lv~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~  485 (766)
                      ....++|||.+.|+-+-+-........ ....++..++ .++..+|.+|+||||+||+|||+.. ..|.|.|+|||....
T Consensus       388 ~~~~~~v~e~l~g~ell~ri~~~~~~~~e~~~w~~~lv-~Av~~LH~~gvvhRDLkp~NIL~~~-~~g~lrltyFG~a~~  465 (612)
T KOG0603|consen  388 GKEIYLVMELLDGGELLRRIRSKPEFCSEASQWAAELV-SAVDYLHEQGVVHRDLKPGNILLDG-SAGHLRLTYFGFWSE  465 (612)
T ss_pred             CceeeeeehhccccHHHHHHHhcchhHHHHHHHHHHHH-HHHHHHHhcCeeecCCChhheeecC-CCCcEEEEEechhhh
Confidence            456799999999987766332111111 1112333332 3578899999999999999999952 478999999999999


Q ss_pred             cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Q 004234          486 ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSF  539 (766)
Q Consensus       486 L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~~~  539 (766)
                      +.++-..   .      .-+-.++++++...--.++.+|.+++...++.+|..+
T Consensus       466 ~~~~~~t---p------~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~  510 (612)
T KOG0603|consen  466 LERSCDT---P------ALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGR  510 (612)
T ss_pred             Cchhhcc---c------chhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCC
Confidence            8776110   0      1245677888888766788899999999988887653

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=98.98  E-value=1.1e-09  Score=110.52  Aligned_cols=172  Identities=18%  Similarity=0.212  Sum_probs=104.9

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      -||.|.+|||-+-++  +|+-.|||-.+--+..                                   ...+.+..|+|.
T Consensus        53 elGrGayG~vekmrh~~sg~imAvKri~~tvn~-----------------------------------q~q~r~L~dldi   97 (282)
T KOG0984|consen   53 ELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNS-----------------------------------QEQKRLLMDLDI   97 (282)
T ss_pred             hhcCCccchhhheeeccCCeEEEEeeehhhcCh-----------------------------------HHHHHHHHhhhh
Confidence            489999999988888  7999999966432221                                   112233344443


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeec-----cCCCeEEEEeecCCCChhhhh--hhhhcCCCHHHHHHHHHHHH---H
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQ--SLDELGVDRKRLGRYAVESY---L  447 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-----~st~~vLVMEyieG~~L~d~~--~l~~~g~d~~~la~~lv~~~---l  447 (766)
                      .+               ..+..|..+.-     -+.+.++.||-++- +++.+-  .++..+.-++.+...++-..   +
T Consensus        98 ~~---------------r~~~CPf~V~FyGa~~regdvwIcME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al  161 (282)
T KOG0984|consen   98 IM---------------RTVDCPFTVHFYGALFREGDVWICMELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHAL  161 (282)
T ss_pred             hc---------------cCCCCCeEEEeehhhhccccEEEeHHHhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHH
Confidence            21               11233333322     25678999999873 455432  23333433444444443333   3


Q ss_pred             HHHH-hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC----CC
Q 004234          448 EQIL-SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV----PT  522 (766)
Q Consensus       448 ~qI~-~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~----~~  522 (766)
                      ..+| .-.++|||.||+|||++.  +|+++++|||.++.+.+....       .+..+=..|++++.++-+.-.    -.
T Consensus       162 ~~L~~kL~vIHRDvKPsNiLIn~--~GqVKiCDFGIsG~L~dSiAk-------t~daGCkpYmaPEri~~e~n~~gY~vk  232 (282)
T KOG0984|consen  162 EFLHSKLSVIHRDVKPSNILINY--DGQVKICDFGISGYLVDSIAK-------TMDAGCKPYMAPERINPELNQKGYSVK  232 (282)
T ss_pred             HHHHHHhhhhhccCCcceEEEcc--CCcEEEcccccceeehhhhHH-------HHhcCCCccCChhhcCcccCcccceee
Confidence            4444 458999999999999996  999999999999999765332       222344556666666544322    24


Q ss_pred             CCHHHHHHH
Q 004234          523 GDTTAVRRT  531 (766)
Q Consensus       523 ~D~~~l~~~  531 (766)
                      +|++++.-.
T Consensus       233 sDvWSLGIt  241 (282)
T KOG0984|consen  233 SDVWSLGIT  241 (282)
T ss_pred             hhhhhhhhh
Confidence            577766643

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.98  E-value=2.8e-09  Score=118.70  Aligned_cols=183  Identities=18%  Similarity=0.195  Sum_probs=114.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH-HHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC-ASVLYQEI  375 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~-~~~l~~El  375 (766)
                      +.||+|-|+.|-.|++  +|+.|||||.-.-                             +.      +++ ...+.+  
T Consensus        24 kTlG~GHFAVVKLArHVFTGekVAVKviDKT-----------------------------Kl------D~~st~hlfq--   66 (864)
T KOG4717|consen   24 KTLGRGHFAVVKLARHVFTGEKVAVKVIDKT-----------------------------KL------DTLSTGHLFQ--   66 (864)
T ss_pred             hhhcCCceehhhhhhhhcccceeEEEEeccc-----------------------------cc------chhhhhHHHH--
Confidence            6799999999999998  8999999997210                             00      111 112223  


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHH---HHHHHh
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESY---LEQILS  452 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~---l~qI~~  452 (766)
                          |.+-|.    ..++..-|+.-.|+ +-.++.+|+.|.=+|+.|.|++--...|+.. .++..-+..+   +.++|.
T Consensus        67 ----EVRCMK----LVQHpNiVRLYEVi-DTQTKlyLiLELGD~GDl~DyImKHe~Gl~E-~La~kYF~QI~~AI~YCHq  136 (864)
T KOG4717|consen   67 ----EVRCMK----LVQHPNIVRLYEVI-DTQTKLYLILELGDGGDLFDYIMKHEEGLNE-DLAKKYFAQIVHAISYCHQ  136 (864)
T ss_pred             ----HHHHHH----HhcCcCeeeeeehh-cccceEEEEEEecCCchHHHHHHhhhccccH-HHHHHHHHHHHHHHHHHhh
Confidence                333333    23333333443444 3357789999999999999976433344332 2222221111   233456


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH-HcCCCCCCCCHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV-QMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~-~lG~~~~~~D~~~l~~~  531 (766)
                      -.++|+|+||+|+.+-+ .-|-++|.|||+...+-|..+-.   .+    .+...|-+++++ .-.+-.|..|++++...
T Consensus       137 LHVVHRDLKPENVVFFE-KlGlVKLTDFGFSNkf~PG~kL~---Ts----CGSLAYSAPEILLGDsYDAPAVDiWSLGVI  208 (864)
T KOG4717|consen  137 LHVVHRDLKPENVVFFE-KLGLVKLTDFGFSNKFQPGKKLT---TS----CGSLAYSAPEILLGDSYDAPAVDIWSLGVI  208 (864)
T ss_pred             hhhhcccCCcceeEEee-ecCceEeeeccccccCCCcchhh---cc----cchhhccCchhhhcCccCCcchhhhHHHHH
Confidence            67999999999998765 57899999999999988765422   22    233334444443 22344577899999887


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      ++-++
T Consensus       209 LyMLV  213 (864)
T KOG4717|consen  209 LYMLV  213 (864)
T ss_pred             HHHHH
Confidence            65544

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.97  E-value=2.7e-09  Score=114.08  Aligned_cols=142  Identities=18%  Similarity=0.310  Sum_probs=102.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.||||..+.|+.  ++++||||.-                          |.    +-+-..+-+|+         
T Consensus        34 kKIGeGsFG~lf~G~Nl~nne~VAIKfE--------------------------Pr----kS~APQLrdEY---------   74 (449)
T KOG1165|consen   34 KKIGEGSFGVLFLGKNLYNNEPVAIKFE--------------------------PR----KSEAPQLRDEY---------   74 (449)
T ss_pred             cccccCcceeeecccccccCceEEEEec--------------------------cc----cCCcchHHHHH---------
Confidence            5799999999999997  8999999964                          11    00111222222         


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHH--HHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESY--LEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~--l~qI~~  452 (766)
                               ++.+.+...  .-||.||.  ...-.++||||.+ |.+|.|+..+....++.+.++-...+.+  ++.+|.
T Consensus        75 ---------r~YKlL~g~--~GIP~vYYFGqeG~~NiLVidLL-GPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~  142 (449)
T KOG1165|consen   75 ---------RTYKLLGGT--EGIPQVYYFGQEGKYNILVIDLL-GPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHE  142 (449)
T ss_pred             ---------HHHHHHcCC--CCCCceeeeccccchhhhhhhhh-CcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHh
Confidence                     244444443  45677774  3334579999987 8899999887777788887776665544  778999


Q ss_pred             CCccccCCCCCcEEEeecC---CCcEEEEeecceecc-ChhhH
Q 004234          453 HGFFHADPHPGNIAVDDVN---GGRLIFYDFGMMGSI-SPNIR  491 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~---~g~l~LiDFGlv~~L-~~~~r  491 (766)
                      +.++.||+||.|+||..+.   ...|.++||||++.+ ++++.
T Consensus       143 k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~Tk  185 (449)
T KOG1165|consen  143 KDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTK  185 (449)
T ss_pred             cceeecccCccceeecCCCCCCCceEEEEeccchhhhcCcccc
Confidence            9999999999999997521   246999999999976 44443

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=98.96  E-value=5.6e-10  Score=116.22  Aligned_cols=139  Identities=22%  Similarity=0.340  Sum_probs=89.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      .-||.|+||.||+-++  .|+..|||-+|-...+.                                   -..++..|.|
T Consensus        70 g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~k-----------------------------------eq~rll~e~d  114 (361)
T KOG1006|consen   70 GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEK-----------------------------------EQKRLLMEHD  114 (361)
T ss_pred             HHhcCCcchhhhhhhcCccCcEEEEEEeeeccchH-----------------------------------HHHHHHHHHH
Confidence            4699999999999999  59999999875433211                                   1223444555


Q ss_pred             HHHHHH---HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhh----hhhcCCCHHHHHHHH---HHHH
Q 004234          377 YTQEAA---NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQS----LDELGVDRKRLGRYA---VESY  446 (766)
Q Consensus       377 f~~EA~---Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~----l~~~g~d~~~la~~l---v~~~  446 (766)
                      -...+.   |+.+|....-.             .+..|++||.++ .+++.+-.    ..+..+...-++...   +++ 
T Consensus       115 ~~mks~~cp~IVkfyGa~F~-------------EGdcWiCMELMd-~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~A-  179 (361)
T KOG1006|consen  115 TVMKSSNCPNIVKFYGALFS-------------EGDCWICMELMD-ISLDKLYKRVYSVQKSRIPENILGHITVATVDA-  179 (361)
T ss_pred             HHHhhcCCcHHHHHhhhhhc-------------CCceeeeHHHHh-hhHHHHHHHHHHHHhccCcHhhhhheeeeehhH-
Confidence            544443   67777654321             367899999987 34444211    111112222122111   122 


Q ss_pred             HHHHH-hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004234          447 LEQIL-SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (766)
Q Consensus       447 l~qI~-~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (766)
                      |..+- ...++|||+||.|||++.  .|.++|+|||++|++-+.
T Consensus       180 L~yLK~~lkiIHRDvKPSNILldr--~G~vKLCDFGIcGqLv~S  221 (361)
T KOG1006|consen  180 LDYLKEELKIIHRDVKPSNILLDR--HGDVKLCDFGICGQLVDS  221 (361)
T ss_pred             HHHHHHHhhhhhccCChhheEEec--CCCEeeecccchHhHHHH
Confidence            33333 578999999999999996  899999999999988553

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.94  E-value=7.8e-10  Score=112.98  Aligned_cols=225  Identities=16%  Similarity=0.220  Sum_probs=135.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..+|.|.++.|+.|..  +.+.++||+.+|--.+.|.++++||..+..-                               
T Consensus        44 rk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkkkKIkREikIL~nL~gg-------------------------------   92 (338)
T KOG0668|consen   44 RKVGRGKYSEVFEGINITNNEKCVIKILKPVKKKKIKREIKILQNLRGG-------------------------------   92 (338)
T ss_pred             HHHcCccHhhHhcccccCCCceEEEeeechHHHHHHHHHHHHHHhccCC-------------------------------
Confidence            4689999999999996  7899999999999888999988888765410                               


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                           .|+..+....++           ..|....|+.||++......+-.    .+.-..+...+.+  ..+..+|..|
T Consensus        93 -----~NIi~L~DiV~D-----------p~SktpaLiFE~v~n~Dfk~ly~----tl~d~dIryY~~elLkALdyCHS~G  152 (338)
T KOG0668|consen   93 -----PNIIKLLDIVKD-----------PESKTPSLIFEYVNNTDFKQLYP----TLTDYDIRYYIYELLKALDYCHSMG  152 (338)
T ss_pred             -----CCeeehhhhhcC-----------ccccCchhHhhhhccccHHHHhh----hhchhhHHHHHHHHHHHHhHHHhcC
Confidence                 011111111111           12344568889998876554321    0111222222222  2367789999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|.||.|+++++ ..-++.|||||++-.+-+..-.+..  +.+-.-+-++.++    +.....=+.|++++...+..
T Consensus       153 ImHRDVKPhNvmIdh-~~rkLrlIDWGLAEFYHp~~eYnVR--VASRyfKGPELLV----dy~~YDYSLD~WS~GcmlA~  225 (338)
T KOG0668|consen  153 IMHRDVKPHNVMIDH-ELRKLRLIDWGLAEFYHPGKEYNVR--VASRYFKGPELLV----DYQMYDYSLDMWSLGCMLAS  225 (338)
T ss_pred             cccccCCcceeeech-hhceeeeeecchHhhcCCCceeeee--eehhhcCCchhee----echhccccHHHHHHHHHHHH
Confidence            999999999999986 4568999999999988775443321  0111122333322    22223334578888766544


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHH--HHHHHHHhhCCCcCCchhhhhh
Q 004234          535 FLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIG--EDLLAIAADQPFRFPATFTFVV  602 (766)
Q Consensus       535 ~l~~~~~~l~~~r~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~l~--~~l~~l~~~~~i~lP~~~~ll~  602 (766)
                      ++-.=               +.+ |. .-+...    +-.+++.++  +++..-..+|++.+||.|--++
T Consensus       226 miFrk---------------epF-Fh-G~dN~D----QLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~  274 (338)
T KOG0668|consen  226 MIFRK---------------EPF-FH-GHDNYD----QLVKIAKVLGTDELYAYLNKYQIDLDPQFEDIL  274 (338)
T ss_pred             HHhcc---------------Ccc-cC-CCCCHH----HHHHHHHHhChHHHHHHHHHHccCCChhHhhHh
Confidence            43210               011 21 111111    123455554  4677888888888888776543

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.94  E-value=1.2e-09  Score=123.72  Aligned_cols=101  Identities=18%  Similarity=0.235  Sum_probs=72.0

Q ss_pred             cCCCeEEEEeecCCCChhhhhhhhhcCCCHH--HHHHHHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecce
Q 004234          406 YTTPQILTMEYVPGIKINRIQSLDELGVDRK--RLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM  483 (766)
Q Consensus       406 ~st~~vLVMEyieG~~L~d~~~l~~~g~d~~--~la~~lv~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv  483 (766)
                      |.+..++..|||.|+-++.+.---..++...  ++...-+...|..+|...++|+|+|.||||++-  +|.|.|.|||..
T Consensus       100 ~enkLwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~Tl--dGdirLADFGVS  177 (1187)
T KOG0579|consen  100 FENKLWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTL--DGDIRLADFGVS  177 (1187)
T ss_pred             ccCceEEEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEe--cCcEeeeccccc
Confidence            4678899999999999987542212223322  333333445588899999999999999999997  999999999998


Q ss_pred             eccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004234          484 GSISPNIREGLLEAFYGIYEKDADKVLQAMV  514 (766)
Q Consensus       484 ~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~  514 (766)
                      .........  .+.|    -+++.+|++++.
T Consensus       178 AKn~~t~qk--RDsF----IGTPYWMAPEVv  202 (1187)
T KOG0579|consen  178 AKNKSTRQK--RDSF----IGTPYWMAPEVV  202 (1187)
T ss_pred             ccchhHHhh--hccc----cCCcccccchhe
Confidence            876543222  2223    347778887765

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.92  E-value=2e-08  Score=100.52  Aligned_cols=148  Identities=20%  Similarity=0.262  Sum_probs=100.7

Q ss_pred             CcccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       297 d~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.+++-.|.-|.|+++.+.|+..+||-.-|.-...-..|.++-+                            .      .
T Consensus        11 ~l~likQGAEArv~~~~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr----------------------------~------R   56 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFSGEAAIIKERFSKRYRHPALDQKLTR----------------------------K------R   56 (229)
T ss_pred             cceeeeccceeeEeeeccCCceeEEeecccccccchHHHHHHHH----------------------------H------H
Confidence            45789999999999999999999999765444333233322211                            0      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCC-Chhhhhh-hhhcCCCHHHHHH--HHHHHHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGI-KINRIQS-LDELGVDRKRLGR--YAVESYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~-~L~d~~~-l~~~g~d~~~la~--~lv~~~l~qI~~  452 (766)
                      ..+||+-+.+++..     .+.+|.+|..-.....|.|||++|. ++.+... ......+...++.  .-+-..+.-+|.
T Consensus        57 t~~Ear~l~k~~~~-----GI~~P~l~~~D~~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~  131 (229)
T KOG3087|consen   57 TKQEARLLAKCRAL-----GIPAPRLIFIDTYGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHD  131 (229)
T ss_pred             HHHHHHHHHHHHHh-----CCCCceEEEEecCCCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhh
Confidence            35678877777652     6899999987777889999999994 4444322 1112222222111  123344667899


Q ss_pred             CCccccCCCCCcEEEeecCCCc--EEEEeeccee
Q 004234          453 HGFFHADPHPGNIAVDDVNGGR--LIFYDFGMMG  484 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~--l~LiDFGlv~  484 (766)
                      .+++|+|+...||++.+ ++++  +.++|||+..
T Consensus       132 ndiiHGDLTTSNill~~-~~~~~~~~lIdfgls~  164 (229)
T KOG3087|consen  132 NDIIHGDLTTSNILLRS-DGNQITPILIDFGLSS  164 (229)
T ss_pred             CCeecccccccceEEec-CCCcCceEEEeecchh
Confidence            99999999999999986 3445  4999999764

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.92  E-value=3.1e-09  Score=117.15  Aligned_cols=169  Identities=20%  Similarity=0.228  Sum_probs=106.9

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +-||.|-||.|+||.++|+.|||||-.---++.                            |   ++|-  .+++-.-++
T Consensus       217 e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~S----------------------------W---frEt--EIYqTvmLR  263 (513)
T KOG2052|consen  217 EIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERS----------------------------W---FRET--EIYQTVMLR  263 (513)
T ss_pred             EEecCccccceeeccccCCceEEEEecccchhh----------------------------h---hhHH--HHHHHHHhc
Confidence            679999999999999999999999872211111                            1   0100  000000011


Q ss_pred             HHHHHHHHHHH-hcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHH----
Q 004234          379 QEAANAELFAS-NFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQIL----  451 (766)
Q Consensus       379 ~EA~Nl~~f~~-~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~--~l~qI~----  451 (766)
                        ..|+-.|-. ..++.          ...|+.+||++|-+.++|.|+..  ...++...........  -+.++|    
T Consensus       264 --HENILgFIaaD~~~~----------gs~TQLwLvTdYHe~GSL~DyL~--r~tv~~~~ml~LalS~AsGLaHLH~eI~  329 (513)
T KOG2052|consen  264 --HENILGFIAADNKDN----------GSWTQLWLVTDYHEHGSLYDYLN--RNTVTTEGMLKLALSIASGLAHLHMEIV  329 (513)
T ss_pred             --cchhhhhhhccccCC----------CceEEEEEeeecccCCcHHHHHh--hccCCHHHHHHHHHHHhhhHHHHHHHHh
Confidence              124444422 11111          23578899999999999999853  3445555544444332  245555    


Q ss_pred             ----hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004234          452 ----SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  518 (766)
Q Consensus       452 ----~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~  518 (766)
                          .-.+-|||+|.-||||..  +|..+|.|+|++-+.+....  ..+.--.---++..||+|++++-.+
T Consensus       330 GTqgKPaIAHRDlKSKNILVKk--n~~C~IADLGLAv~h~~~t~--~idi~~N~rVGTKRYMAPEvLdeti  396 (513)
T KOG2052|consen  330 GTQGKPAIAHRDLKSKNILVKK--NGTCCIADLGLAVRHDSDTD--TIDIPPNPRVGTKRYMAPEVLDETI  396 (513)
T ss_pred             cCCCCchhhccccccccEEEcc--CCcEEEeeceeeEEecccCC--cccCCCCCccceeeccChHHhhhhc
Confidence                345999999999999986  89999999999988766542  1111111123678899999987544

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.91  E-value=5.1e-09  Score=117.88  Aligned_cols=183  Identities=18%  Similarity=0.222  Sum_probs=116.2

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +-||+|+-..||++.- +.+-+|+|-..-                   .          ..|.. .++          -|
T Consensus       367 k~iG~GGSSkV~kV~~s~~~iyalkkv~~-------------------~----------~~D~q-tl~----------gy  406 (677)
T KOG0596|consen  367 KQIGSGGSSKVFKVLNSDKQIYALKKVVL-------------------L----------EADNQ-TLD----------GY  406 (677)
T ss_pred             HhhcCCCcceeeeeecCCCcchhhhHHHH-------------------h----------hcCHH-HHH----------HH
Confidence            5799999999999998 455666652200                   0          00111 111          36


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeec-c-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHH---HHHHHHHHHHHh
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWE-Y-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGR---YAVESYLEQILS  452 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~---~lv~~~l~qI~~  452 (766)
                      ++|..-+.+|.++      ..|-..|.- . .+-.+|||||=+ +.|+.+..-... .++.....   .-+-.+.+.||.
T Consensus       407 ~nEI~lL~KLkg~------~~IIqL~DYEv~d~~lYmvmE~Gd-~DL~kiL~k~~~-~~~~~~lk~ywkqML~aV~~IH~  478 (677)
T KOG0596|consen  407 RNEIALLNKLKGH------DKIIQLYDYEVTDGYLYMVMECGD-IDLNKILKKKKS-IDPDWFLKFYWKQMLLAVKTIHQ  478 (677)
T ss_pred             HHHHHHHHHhcCC------ceEEEEeeeeccCceEEEEeeccc-ccHHHHHHhccC-CCchHHHHHHHHHHHHHHHHHHH
Confidence            6777777777543      334444432 2 245699999843 567776543222 22211111   122234677899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH-HcCC----------CCC
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV-QMGV----------LVP  521 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~-~lG~----------~~~  521 (766)
                      +|++|.|+||.|+++-   .|.++|||||++..+.+++..-+.+-=    .+++.||.++.+ +|..          +.+
T Consensus       479 ~gIVHSDLKPANFLlV---kG~LKLIDFGIA~aI~~DTTsI~kdsQ----vGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r  551 (677)
T KOG0596|consen  479 HGIVHSDLKPANFLLV---KGRLKLIDFGIANAIQPDTTSIVKDSQ----VGTVNYMSPEALTDMSSSRENGKSKIKISR  551 (677)
T ss_pred             hceeecCCCcccEEEE---eeeEEeeeechhcccCccccceeeccc----cCcccccCHHHHhhccccccCCCcceeecC
Confidence            9999999999999987   699999999999999877654433322    356677766544 2321          456


Q ss_pred             CCCHHHHHHHHHHHH
Q 004234          522 TGDTTAVRRTAQFFL  536 (766)
Q Consensus       522 ~~D~~~l~~~i~~~l  536 (766)
                      ..|++++.-.++.++
T Consensus       552 ~SDvWSLGCILYqMv  566 (677)
T KOG0596|consen  552 KSDVWSLGCILYQMV  566 (677)
T ss_pred             ccchhhhhhHHHHHH
Confidence            789999999888775

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.91  E-value=4.4e-09  Score=112.07  Aligned_cols=241  Identities=19%  Similarity=0.277  Sum_probs=148.6

Q ss_pred             hhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          293 FERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       293 F~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      ..+|+. ..||.||++.|-.+++  +.+-+|+||.+......                       ...+||+..-..+  
T Consensus       249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nd-----------------------dedidwvqtek~v--  303 (593)
T KOG0695|consen  249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVND-----------------------DEDIDWVQTEKHV--  303 (593)
T ss_pred             cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCC-----------------------cccchhHHhhHHH--
Confidence            345665 7899999999999999  47899999875432211                       1123454321111  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhh-hhhhhhcCCCHHHHHHHHHHHHH
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINR-IQSLDELGVDRKRLGRYAVESYL  447 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d-~~~l~~~g~d~~~la~~lv~~~l  447 (766)
                                       | +.-.+.|.+ -....+ .-.++.+.|.||++|+.|-- +...++......+.-..-+...+
T Consensus       304 -----------------f-e~asn~pflvglhscf-qtesrlffvieyv~ggdlmfhmqrqrklpeeharfys~ei~lal  364 (593)
T KOG0695|consen  304 -----------------F-EQASNNPFLVGLHSCF-QTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLAL  364 (593)
T ss_pred             -----------------H-HhccCCCeEEehhhhh-cccceEEEEEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHH
Confidence                             1 011122211 111111 22466799999999998763 33333333333344444455668


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceec-cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS-ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~-L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~  526 (766)
                      ..+|+.|++.+|+|-.|++++.  .|.|+|.|+||++. +.+.+.       .+...+++.+++++++.-....-..|-+
T Consensus       365 ~flh~rgiiyrdlkldnvllda--eghikltdygmcke~l~~gd~-------tstfcgtpnyiapeilrgeeygfsvdww  435 (593)
T KOG0695|consen  365 NFLHERGIIYRDLKLDNVLLDA--EGHIKLTDYGMCKEGLGPGDT-------TSTFCGTPNYIAPEILRGEEYGFSVDWW  435 (593)
T ss_pred             HHHhhcCeeeeeccccceEEcc--CCceeecccchhhcCCCCCcc-------cccccCCCcccchhhhcccccCceehHH
Confidence            8899999999999999999986  89999999999975 333322       2334679999999999765555567888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCchhhhhhhhhh
Q 004234          527 AVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFS  606 (766)
Q Consensus       527 ~l~~~i~~~l~~~~~~l~~~r~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~i~lP~~~~ll~Ral~  606 (766)
                      ++...+-+++..        |..    .+-.|..+|-          .+.   -.-++++..+..+++|+.+.  +|+..
T Consensus       436 algvlmfemmag--------rsp----fdivgm~n~d----------~nt---edylfqvilekqiriprsls--vkas~  488 (593)
T KOG0695|consen  436 ALGVLMFEMMAG--------RSP----FDIVGMDNPD----------MNT---EDYLFQVILEKQIRIPRSLS--VKASH  488 (593)
T ss_pred             HHHHHHHHHHcC--------CCC----cceecCCCcc----------cch---hHHHHHHHhhhcccccceee--hhhHH
Confidence            887655443321        100    0011111110          111   12356677788999999854  78888


Q ss_pred             hHhhhhc
Q 004234          607 VLDGIGK  613 (766)
Q Consensus       607 ~lEGi~~  613 (766)
                      +|.|...
T Consensus       489 vlkgfln  495 (593)
T KOG0695|consen  489 VLKGFLN  495 (593)
T ss_pred             HHHHhhc
Confidence            8887764

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.90  E-value=1.6e-09  Score=107.23  Aligned_cols=141  Identities=23%  Similarity=0.280  Sum_probs=92.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|.+|.|++|+.  +++-||+|-.|-+-.+.                                  .+..+..+|+-
T Consensus         8 ekigegtygtvfkarn~~t~eivalkrvrldddde----------------------------------gvpssalreic   53 (292)
T KOG0662|consen    8 EKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDE----------------------------------GVPSSALREIC   53 (292)
T ss_pred             HhhcCCcceeeEecccCCccceEEEEEEeccCCCC----------------------------------CCcHHHHHHHH
Confidence            5799999999999998  58999999775332111                                  11234456777


Q ss_pred             HHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH-HHHH--HHHHH
Q 004234          377 YTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA-VESY--LEQIL  451 (766)
Q Consensus       377 f~~EA~--Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l-v~~~--l~qI~  451 (766)
                      ..+|.+  |+.++...+..             ..+..||.|||+- .|..+...-...+|.. +++.. ++..  +...|
T Consensus        54 llkelkhknivrl~dvlhs-------------dkkltlvfe~cdq-dlkkyfdslng~~d~~-~~rsfmlqllrgl~fch  118 (292)
T KOG0662|consen   54 LLKELKHKNIVRLHDVLHS-------------DKKLTLVFEFCDQ-DLKKYFDSLNGDLDPE-IVRSFMLQLLRGLGFCH  118 (292)
T ss_pred             HHHHhhhcceeehhhhhcc-------------CceeEEeHHHhhH-HHHHHHHhcCCcCCHH-HHHHHHHHHHhhhhhhh
Confidence            777765  55555443322             3456799999974 2333221111223433 22222 2221  34457


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhh
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNI  490 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~  490 (766)
                      .+++.|+|+||.|++++.  +|.+++.|||+++-+.-..
T Consensus       119 shnvlhrdlkpqnllin~--ngelkladfglarafgipv  155 (292)
T KOG0662|consen  119 SHNVLHRDLKPQNLLINR--NGELKLADFGLARAFGIPV  155 (292)
T ss_pred             hhhhhhccCCcceEEecc--CCcEEecccchhhhcCCce
Confidence            899999999999999986  8999999999998776544

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=98.90  E-value=7.9e-09  Score=115.49  Aligned_cols=173  Identities=26%  Similarity=0.340  Sum_probs=102.4

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCc--cchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGL--KDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i--~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      -.|.|-|+.|.+|..  .|..|||||+|-+-  .+.=...+.+|+.+..    ..|                        
T Consensus       439 ~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~----AD~------------------------  490 (752)
T KOG0670|consen  439 YTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLND----ADP------------------------  490 (752)
T ss_pred             ccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhc----cCc------------------------
Confidence            579999999999999  59999999997652  2222334444444321    111                        


Q ss_pred             HHHHHH-HHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcC----CCHHHHHHHHHHHHHHH-
Q 004234          376 DYTQEA-ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG----VDRKRLGRYAVESYLEQ-  449 (766)
Q Consensus       376 Df~~EA-~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g----~d~~~la~~lv~~~l~q-  449 (766)
                          |- .+..++...|.+             -...|||.|-+. ..|.++  +...|    +..+.     ++.|.+| 
T Consensus       491 ----Edk~Hclrl~r~F~h-------------knHLClVFE~Ls-lNLRev--LKKyG~nvGL~ika-----VRsYaqQL  545 (752)
T KOG0670|consen  491 ----EDKFHCLRLFRHFKH-------------KNHLCLVFEPLS-LNLREV--LKKYGRNVGLHIKA-----VRSYAQQL  545 (752)
T ss_pred             ----hhhhHHHHHHHHhhh-------------cceeEEEehhhh-chHHHH--HHHhCcccceeehH-----HHHHHHHH
Confidence                11 133333334432             345677777542 233343  22322    22222     3444444 


Q ss_pred             ------HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC-C
Q 004234          450 ------ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP-T  522 (766)
Q Consensus       450 ------I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~-~  522 (766)
                            +-..||+|+|+||.||||+. ....++|||||.+...++..-..|+   ++-+.+-++-|      +|+.-. .
T Consensus       546 flALklLK~c~vlHaDIKPDNiLVNE-~k~iLKLCDfGSA~~~~eneitPYL---VSRFYRaPEIi------LG~~yd~~  615 (752)
T KOG0670|consen  546 FLALKLLKKCGVLHADIKPDNILVNE-SKNILKLCDFGSASFASENEITPYL---VSRFYRAPEII------LGLPYDYP  615 (752)
T ss_pred             HHHHHHHHhcCeeecccCccceEecc-CcceeeeccCccccccccccccHHH---HHHhccCccee------ecCcccCC
Confidence                  44799999999999999986 4567999999999999887655542   22222333322      454332 3


Q ss_pred             CCHHHHHHHHHHH
Q 004234          523 GDTTAVRRTAQFF  535 (766)
Q Consensus       523 ~D~~~l~~~i~~~  535 (766)
                      .|++++...++++
T Consensus       616 iD~WSvgctLYEl  628 (752)
T KOG0670|consen  616 IDTWSVGCTLYEL  628 (752)
T ss_pred             ccceeeceeeEEe
Confidence            4777777655543

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=2.1e-09  Score=126.25  Aligned_cols=184  Identities=16%  Similarity=0.150  Sum_probs=126.6

Q ss_pred             ccccccceeEEEEEeec-------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +-+|.|.||.||.|...       -+-||||..+-....                                         
T Consensus       492 ~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~-----------------------------------------  530 (774)
T KOG1026|consen  492 EELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAEN-----------------------------------------  530 (774)
T ss_pred             hhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccH-----------------------------------------
Confidence            46999999999999983       256999976332221                                         


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-------cC------CCHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-------LG------VDRKRL  438 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-------~g------~d~~~l  438 (766)
                      ....||++||.-+..|.     +++|.----+.-.....+||.|||+-++|.++.....       .+      ++..++
T Consensus       531 ~~~~dF~REaeLla~l~-----H~nIVrLlGVC~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~  605 (774)
T KOG1026|consen  531 QARQDFRREAELLAELQ-----HPNIVRLLGVCREGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQF  605 (774)
T ss_pred             HHHHHHHHHHHHHHhcc-----CCCeEEEEEEEccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHH
Confidence            13458999998776663     3433322222233567899999999999999764321       11      334444


Q ss_pred             HHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHH-HHHHHHhhcCHHHHHHHHHH
Q 004234          439 GRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL-EAFYGIYEKDADKVLQAMVQ  515 (766)
Q Consensus       439 a~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~-~l~~a~~~~D~~~v~~~l~~  515 (766)
                      .....+  +-+..+-.+.|+|+|+-..|.||.+  +-.+||.||||++.+-..+-.... +.++     -...|.++-+.
T Consensus       606 L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge--~l~VKIsDfGLsRdiYssDYYk~~~~t~l-----PIRWMppEsIl  678 (774)
T KOG1026|consen  606 LHIATQIAAGMEYLSSHHFVHRDLATRNCLVGE--NLVVKISDFGLSRDIYSSDYYKVRGNTLL-----PIRWMPPESIL  678 (774)
T ss_pred             HHHHHHHHHHHHHHHhCcccccchhhhhceecc--ceEEEecccccchhhhhhhhhcccCCcee-----eeecCCHHHhh
Confidence            444433  4466677999999999999999985  678999999999976443322211 1111     25678889999


Q ss_pred             cCCCCCCCCHHHHHHHHHHH
Q 004234          516 MGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       516 lG~~~~~~D~~~l~~~i~~~  535 (766)
                      .|-.+..+|+.++...+=++
T Consensus       679 y~kFTteSDVWs~GVvLWEI  698 (774)
T KOG1026|consen  679 YGKFTTESDVWSFGVVLWEI  698 (774)
T ss_pred             cCcccchhhhhhhhhhhhhh
Confidence            99999999999999766444

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=98.87  E-value=4e-09  Score=110.25  Aligned_cols=73  Identities=21%  Similarity=0.334  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHHHHHH----hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHH
Q 004234          434 DRKRLGRYAVESYLEQIL----SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV  509 (766)
Q Consensus       434 d~~~la~~lv~~~l~qI~----~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v  509 (766)
                      -+++++..+.-+..+.++    .||++|||.||.|||+++  .|.|+|+|||++|++.+.....       -..+=+.||
T Consensus       188 iPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe--~GniKlCDFGIsGrlvdSkAht-------rsAGC~~YM  258 (391)
T KOG0983|consen  188 IPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDE--RGNIKLCDFGISGRLVDSKAHT-------RSAGCAAYM  258 (391)
T ss_pred             chHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEcc--CCCEEeecccccceeecccccc-------cccCCcccc
Confidence            345555554444433333    699999999999999986  8999999999999997653321       123445566


Q ss_pred             HHHHHH
Q 004234          510 LQAMVQ  515 (766)
Q Consensus       510 ~~~l~~  515 (766)
                      +++-++
T Consensus       259 aPERid  264 (391)
T KOG0983|consen  259 APERID  264 (391)
T ss_pred             CccccC
Confidence            665543

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=98.87  E-value=5e-09  Score=122.57  Aligned_cols=180  Identities=18%  Similarity=0.180  Sum_probs=123.8

Q ss_pred             cccccccceeE-EEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQ-VHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       298 ~~PIgsaSiGQ-VhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++-+|.|+-|. ||+|...|++||||-.                                       +.|+.....+|++
T Consensus       514 ~eilG~Gs~Gt~Vf~G~ye~R~VAVKrl---------------------------------------l~e~~~~A~rEi~  554 (903)
T KOG1027|consen  514 KEILGYGSNGTVVFRGVYEGREVAVKRL---------------------------------------LEEFFDFAQREIQ  554 (903)
T ss_pred             HHHcccCCCCcEEEEEeeCCceehHHHH---------------------------------------hhHhHHHHHHHHH
Confidence            45677888875 6999999999999932                                       3445555567777


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCC-----eEEEEeecCCCChhhhhhhh-----hcC-CCHHHHHHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTP-----QILTMEYVPGIKINRIQSLD-----ELG-VDRKRLGRYAVES  445 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~-----~vLVMEyieG~~L~d~~~l~-----~~g-~d~~~la~~lv~~  445 (766)
                      ..+|..          ++     |.++.-||++     .|++.|.|. .+|.|+....     ..+ +++..+...++. 
T Consensus       555 lL~eSD----------~H-----~NviRyyc~E~d~qF~YIalELC~-~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~-  617 (903)
T KOG1027|consen  555 LLQESD----------EH-----PNVIRYYCSEQDRQFLYIALELCA-CSLQDLIESSGLDVEMQSDIDPISVLSQIAS-  617 (903)
T ss_pred             HHHhcc----------CC-----CceEEEEeeccCCceEEEEehHhh-hhHHHHHhccccchhhcccccHHHHHHHHHH-
Confidence            666653          22     3333334443     489999886 4677765432     111 333333333333 


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeec---CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDV---NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~---~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~  522 (766)
                      .+.++|.-+++|||+||.||||...   ...+++|.|||++++++... ..+..  .+-..+....++++++........
T Consensus       618 GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~-sS~~r--~s~~sGt~GW~APE~L~~~~~~~a  694 (903)
T KOG1027|consen  618 GLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGK-SSFSR--LSGGSGTSGWQAPEQLREDRKTQA  694 (903)
T ss_pred             HHHHHHhcccccccCCCceEEEEccCCCcceeEEecccccccccCCCc-chhhc--ccCCCCcccccCHHHHhccccCcc
Confidence            5788999999999999999999852   22468999999999997754 33443  344578899999999998887778


Q ss_pred             CCHHHHHHHHHHHH
Q 004234          523 GDTTAVRRTAQFFL  536 (766)
Q Consensus       523 ~D~~~l~~~i~~~l  536 (766)
                      .|+.++...+++.+
T Consensus       695 vDiFslGCvfyYvl  708 (903)
T KOG1027|consen  695 VDIFSLGCVFYYVL  708 (903)
T ss_pred             cchhhcCceEEEEe
Confidence            88888876654433

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.87  E-value=4.8e-08  Score=104.36  Aligned_cols=104  Identities=14%  Similarity=0.013  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcccccee--eecc-----CCCeEEEEeecCCC-Chhhhhhhh-hcCCCH---HHHHHHHH
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTI--FWEY-----TTPQILTMEYVPGI-KINRIQSLD-ELGVDR---KRLGRYAV  443 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v--~~e~-----st~~vLVMEyieG~-~L~d~~~l~-~~g~d~---~~la~~lv  443 (766)
                      .+.+|.+++.++.+     .+|.+|.+  |.+.     ..+.+||||+++|. ++.++...- ....+.   ..+... +
T Consensus        74 ~a~rE~~~l~~L~~-----~GIptP~pVa~~e~~~~~~~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~-l  147 (268)
T PRK15123         74 GADREWRAIHRLHE-----VGVDTMTGVAFGERGSNPATRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKR-V  147 (268)
T ss_pred             HHHHHHHHHHHHHH-----cCCCCCCeeEEEEecCCCccceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHH-H
Confidence            36678889998876     35777777  4322     23478999999996 788764311 111111   122222 4


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEee-----cCCCcEEEEeecceec
Q 004234          444 ESYLEQILSHGFFHADPHPGNIAVDD-----VNGGRLIFYDFGMMGS  485 (766)
Q Consensus       444 ~~~l~qI~~~GffHaDpHPGNILV~~-----~~~g~l~LiDFGlv~~  485 (766)
                      ..++.++|..|++|+|++|+|||++.     .+++++.+|||+.+..
T Consensus       148 a~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        148 ATMVRDMHAAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             HHHHHHHHHCcCccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            45678899999999999999999974     1246899999998853

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.85  E-value=1.8e-08  Score=101.91  Aligned_cols=146  Identities=19%  Similarity=0.256  Sum_probs=89.8

Q ss_pred             CcccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          297 DVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       297 d~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      +-+|++.|..++||+.+. +|+.+++|+.+++-...                                         ...
T Consensus         2 ~~~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~-----------------------------------------~~~   40 (223)
T cd05154           2 EVRQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLP-----------------------------------------SAH   40 (223)
T ss_pred             cceecCCCccceEEEEEecCCcceEEEeCCCcccCc-----------------------------------------ccc
Confidence            347899999999999998 46999999864432100                                         011


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCC-----CeEEEEeecCCCChhhhhh---h---------h---------
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTT-----PQILTMEYVPGIKINRIQS---L---------D---------  429 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st-----~~vLVMEyieG~~L~d~~~---l---------~---------  429 (766)
                      ++..|++.+..+++.     .+.+|+++.-...     ..+++|||++|.++.+...   +         .         
T Consensus        41 ~~~~E~~~~~~l~~~-----~~~vp~~~~~~~~~~~~~~~~~v~e~i~G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~l  115 (223)
T cd05154          41 DVAREYRVLRALAGT-----GVPVPKVLALCEDPSVLGTPFYVMERVDGRVLRDRLLRPELSPEERRALARALADTLAAL  115 (223)
T ss_pred             cHHHHHHHHHHhhCC-----CCCCCCEEEECCCCCccCCceEEEEEeCCEecCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            456677777776542     4668887764433     4589999999998876321   0         0         


Q ss_pred             -hc-----CC---C------HHHHHHH-------------HHHHHHHHH-------HhCCccccCCCCCcEEEeecCCCc
Q 004234          430 -EL-----GV---D------RKRLGRY-------------AVESYLEQI-------LSHGFFHADPHPGNIAVDDVNGGR  474 (766)
Q Consensus       430 -~~-----g~---d------~~~la~~-------------lv~~~l~qI-------~~~GffHaDpHPGNILV~~~~~g~  474 (766)
                       ..     +.   .      ...+...             .+...++.+       ...+++|+|+||+||++++..++.
T Consensus       116 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~  195 (223)
T cd05154         116 HSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRV  195 (223)
T ss_pred             hCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcE
Confidence             00     00   0      0000000             001111111       136789999999999997411356


Q ss_pred             EEEEeecceeccCh
Q 004234          475 LIFYDFGMMGSISP  488 (766)
Q Consensus       475 l~LiDFGlv~~L~~  488 (766)
                      +.++||+.++.-++
T Consensus       196 ~~iID~e~~~~g~~  209 (223)
T cd05154         196 VAVLDWELATLGDP  209 (223)
T ss_pred             EEEEeccccccCCh
Confidence            88999999987655

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=98.82  E-value=7.7e-09  Score=120.49  Aligned_cols=185  Identities=13%  Similarity=0.105  Sum_probs=128.0

Q ss_pred             cccccccceeEEEEEee--cCe----eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~----~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      ...||+|.||.||+|.+  +|+    +|||||..-.-...                                        
T Consensus       701 ~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~----------------------------------------  740 (1177)
T KOG1025|consen  701 DKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPK----------------------------------------  740 (1177)
T ss_pred             hceeccccceeEEeeeEecCCceecceeEEEEeeccCCch----------------------------------------
Confidence            35799999999999999  564    78999873211100                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLE  448 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~--~l~  448 (766)
                       .-..+..||-+|.++.     ++++ ++-. + ..++...||++|++++.|.|+.+..+..+-.+.+.....+.  .++
T Consensus       741 -~s~e~LdeAl~masld-----Hpnl~RLLg-v-c~~s~~qlvtq~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~  812 (1177)
T KOG1025|consen  741 -ASIELLDEALRMASLD-----HPNLLRLLG-V-CMLSTLQLVTQLMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMK  812 (1177)
T ss_pred             -hhHHHHHHHHHHhcCC-----CchHHHHhh-h-cccchHHHHHHhcccchHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence             0012344454444431     1221 1111 1 12344789999999999999877666666666666655443  477


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      .+++++++|||+-..|+||..  ...+++.|||++.-+.++..+.-+.    ...--+..|+=+.+.....+...|++++
T Consensus       813 YLe~qrlVHrdLaaRNVLVks--P~hvkitdfgla~ll~~d~~ey~~~----~gK~pikwmale~i~~~~~thqSDVWsf  886 (1177)
T KOG1025|consen  813 YLEEQRLVHRDLAARNVLVKS--PNHVKITDFGLAKLLAPDEKEYSAP----GGKVPIKWMALESIRIRKYTHQSDVWSF  886 (1177)
T ss_pred             HHHhcchhhhhhhhhheeecC--CCeEEEEecchhhccCccccccccc----ccccCcHHHHHHHhhccCCCchhhhhhh
Confidence            888999999999999999986  6789999999999998876654322    2233456677777778888999999999


Q ss_pred             HHHHHHHH
Q 004234          529 RRTAQFFL  536 (766)
Q Consensus       529 ~~~i~~~l  536 (766)
                      ...+=+++
T Consensus       887 GVtiWElm  894 (1177)
T KOG1025|consen  887 GVTIWELM  894 (1177)
T ss_pred             hhhHHHHH
Confidence            98775554

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=98.79  E-value=1.7e-09  Score=111.46  Aligned_cols=188  Identities=18%  Similarity=0.225  Sum_probs=119.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|.|..|+|+..  +|+..|+|+..          ++      ++-.          .++.              +
T Consensus        17 e~igkG~FSvVrRc~~~~tg~~fa~kiin----------~~------k~~~----------~~~e--------------~   56 (355)
T KOG0033|consen   17 EELGKGAFSVVRRCVHKTTGLEFAAKIIN----------TK------KLSA----------RDFQ--------------K   56 (355)
T ss_pred             HHHccCchHHHHHHHhccchHHHHHHHhh----------hh------hhcc----------ccHH--------------H
Confidence            3588999999999988  69999988761          11      1100          0111              2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhh-hhhh-hhcCCCHHHHHHHHHHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINR-IQSL-DELGVDRKRLGRYAVESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d-~~~l-~~~g~d~~~la~~lv~~~l~qI~~~G  454 (766)
                      +.+||+    ..+++++..-+..-+.|.+ .+-++||.|+++|..|-. +.+- --...+.....+.+++ .+...|..|
T Consensus        57 l~rEar----IC~~LqHP~IvrL~~ti~~-~~~~ylvFe~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLe-al~yCH~n~  130 (355)
T KOG0033|consen   57 LEREAR----ICRKLQHPNIVRLHDSIQE-ESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILE-ALAYCHSNG  130 (355)
T ss_pred             HHHHHH----HHHhcCCCcEeehhhhhcc-cceeEEEEecccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcC
Confidence            334554    3444555433444333322 345799999999998764 2110 0000111122222222 245567899


Q ss_pred             ccccCCCCCcEEEeecCC-CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNG-GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~-g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|++|.|+++..... ..++|.|||++..++...      ++.+ ..+.+.+|+++..+-.-.....|+++-...+.
T Consensus       131 IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~------~~~G-~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLf  203 (355)
T KOG0033|consen  131 IVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGE------AWHG-FAGTPGYLSPEVLKKDPYSKPVDIWACGVILY  203 (355)
T ss_pred             ceeccCChhheeeeeccCCCceeecccceEEEeCCcc------cccc-ccCCCcccCHHHhhcCCCCCcchhhhhhHHHH
Confidence            999999999999975333 369999999999998422      1222 35799999999999988888999999887776


Q ss_pred             HHHHHH
Q 004234          534 FFLNSF  539 (766)
Q Consensus       534 ~~l~~~  539 (766)
                      .++..|
T Consensus       204 iLL~G~  209 (355)
T KOG0033|consen  204 ILLVGY  209 (355)
T ss_pred             HHHhCC
Confidence            666544

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.78  E-value=2.7e-08  Score=114.17  Aligned_cols=176  Identities=15%  Similarity=0.135  Sum_probs=116.8

Q ss_pred             ccccccceeEEEEEeec--CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~--G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      -.+|.|.+|.||.|++.  ....|||-..    +.                                -+++..-+.+|+.
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIp----ek--------------------------------dsr~~QPLhEEIa  624 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIP----EK--------------------------------DSREVQPLHEEIA  624 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecc----cc--------------------------------cchhhccHHHHHH
Confidence            47999999999999993  5567888441    11                                0112233455665


Q ss_pred             HHHHH--HHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCC--CHHHHHH--HHHHHHHHHH
Q 004234          377 YTQEA--ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV--DRKRLGR--YAVESYLEQI  450 (766)
Q Consensus       377 f~~EA--~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~--d~~~la~--~lv~~~l~qI  450 (766)
                      +....  +|+.++-..+...             +-.-+.||-++|++|+++..-.-..+  +...+.-  .-+-..++.+
T Consensus       625 LH~~LrHkNIVrYLGs~sen-------------Gf~kIFMEqVPGGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYL  691 (1226)
T KOG4279|consen  625 LHSTLRHKNIVRYLGSVSEN-------------GFFKIFMEQVPGGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYL  691 (1226)
T ss_pred             HHHHHhhHhHHHHhhccCCC-------------CeEEEEeecCCCCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhh
Confidence            55444  4777776654432             23458899999999999865432222  2222222  2233447888


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC--CCCCCHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL--VPTGDTTAV  528 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~--~~~~D~~~l  528 (766)
                      |+..++|||+|-.|++|+. -.|-+++.|||-++++..-  ....+.    +.++..+|++++++-|.-  .+..|+++|
T Consensus       692 Hen~IVHRDIKGDNVLvNT-ySGvlKISDFGTsKRLAgi--nP~TET----FTGTLQYMAPEvIDqG~RGYG~aADIWS~  764 (1226)
T KOG4279|consen  692 HENKIVHRDIKGDNVLVNT-YSGVLKISDFGTSKRLAGI--NPCTET----FTGTLQYMAPEVIDQGPRGYGKAADIWSF  764 (1226)
T ss_pred             hhcceeeccccCCcEEEee-ccceEEecccccchhhccC--Cccccc----cccchhhhChHhhccCCcCCCchhhhhhc
Confidence            9999999999999999985 4689999999999887431  112222    356888999999998742  334566666


Q ss_pred             HH
Q 004234          529 RR  530 (766)
Q Consensus       529 ~~  530 (766)
                      .-
T Consensus       765 GC  766 (1226)
T KOG4279|consen  765 GC  766 (1226)
T ss_pred             cc
Confidence            53

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=98.78  E-value=4.7e-09  Score=117.01  Aligned_cols=145  Identities=19%  Similarity=0.184  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCC--HHHHHHHHHH
Q 004234          369 SVLYQEIDYTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVD--RKRLGRYAVE  444 (766)
Q Consensus       369 ~~l~~ElDf~~EA~--Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d--~~~la~~lv~  444 (766)
                      +.+..|-+.+.|.+  -+.++++-|++..+             .|+.||-|=|+.|+.+..-+. .+|  ..+.....+-
T Consensus       465 eHv~sEr~Im~~~~s~fIvrLYrTfrd~ky-------------vYmLmEaClGGElWTiLrdRg-~Fdd~tarF~~acv~  530 (732)
T KOG0614|consen  465 EHVFSERNIMMECRSDFIVRLYRTFRDSKY-------------VYMLMEACLGGELWTILRDRG-SFDDYTARFYVACVL  530 (732)
T ss_pred             HHHHhHHHHHHhcCchHHHHHHHHhccchh-------------hhhhHHhhcCchhhhhhhhcC-CcccchhhhhHHHHH
Confidence            34445555555554  46677777776443             368999999999998754322 222  3344444455


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004234          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (766)
Q Consensus       445 ~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D  524 (766)
                      ..+..+|++||+.||+||.|++++.  +|-++|.|||.++.+....+..       .+.++++|++++++-..-.....|
T Consensus       531 EAfeYLH~k~iIYRDLKPENllLd~--~Gy~KLVDFGFAKki~~g~KTw-------TFcGTpEYVAPEIILnKGHD~avD  601 (732)
T KOG0614|consen  531 EAFEYLHRKGIIYRDLKPENLLLDN--RGYLKLVDFGFAKKIGSGRKTW-------TFCGTPEYVAPEIILNKGHDRAVD  601 (732)
T ss_pred             HHHHHHHhcCceeccCChhheeecc--CCceEEeehhhHHHhccCCcee-------eecCCcccccchhhhccCcchhhH
Confidence            5688999999999999999999986  8999999999999997765532       245799999999986655666778


Q ss_pred             HHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFL  536 (766)
Q Consensus       525 ~~~l~~~i~~~l  536 (766)
                      .+++.-.+++++
T Consensus       602 yWaLGIli~ELL  613 (732)
T KOG0614|consen  602 YWALGILIYELL  613 (732)
T ss_pred             HHHHHHHHHHHH
Confidence            888887666655

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=98.70  E-value=9.4e-08  Score=105.17  Aligned_cols=189  Identities=15%  Similarity=0.173  Sum_probs=109.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH-HHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD-ECASVLYQEI  375 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~-E~~~~l~~El  375 (766)
                      .-+|.|+|..||+|.+  ..+.|||||-.-+                              -+|.+=-. ..-+...+|-
T Consensus       469 hLLGrGGFSEVyKAFDl~EqRYvAvKIHqlN------------------------------K~WrdEKKeNYhKHAcREy  518 (775)
T KOG1151|consen  469 HLLGRGGFSEVYKAFDLTEQRYVAVKIHQLN------------------------------KNWRDEKKENYHKHACREY  518 (775)
T ss_pred             HHhccccHHHHHHhcccchhheeeEeeehhc------------------------------cchhhHhhhhHHHHHHHHH
Confidence            3589999999999998  5899999986211                              13332111 1111222222


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeecc---CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH---HHHH
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEY---TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES---YLEQ  449 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~---st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~---~l~q  449 (766)
                      +.          .   +...+-+|.+.|.-+   +...+-|.|||+|-.|+-+..  +...--..-++.++-.   .|..
T Consensus       519 rI----------H---KeLDHpRIVKlYDyfslDtdsFCTVLEYceGNDLDFYLK--QhklmSEKEARSIiMQiVnAL~Y  583 (775)
T KOG1151|consen  519 RI----------H---KELDHPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDFYLK--QHKLMSEKEARSIIMQIVNALKY  583 (775)
T ss_pred             hh----------h---hccCcceeeeeeeeeeeccccceeeeeecCCCchhHHHH--hhhhhhHHHHHHHHHHHHHHHHH
Confidence            22          1   222223444555433   345689999999998876543  2211111222222221   1333


Q ss_pred             HH--hCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHH-HHHHhhcCHHHHHHHHHHcCCCCC----
Q 004234          450 IL--SHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEA-FYGIYEKDADKVLQAMVQMGVLVP----  521 (766)
Q Consensus       450 I~--~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l-~~a~~~~D~~~v~~~l~~lG~~~~----  521 (766)
                      +-  ...++|-|+||||||+... .-|.|++.|||+...++++.-.....+ +.+-..+++.++.++..-.|--+|    
T Consensus       584 LNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsn  663 (775)
T KOG1151|consen  584 LNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISN  663 (775)
T ss_pred             HhccCCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCcccc
Confidence            32  4579999999999998641 236899999999999877543322111 122235788888887665553333    


Q ss_pred             CCCHHHHHHHH
Q 004234          522 TGDTTAVRRTA  532 (766)
Q Consensus       522 ~~D~~~l~~~i  532 (766)
                      ..|++++....
T Consensus       664 KVDVWSvGVIF  674 (775)
T KOG1151|consen  664 KVDVWSVGVIF  674 (775)
T ss_pred             ceeeEeeehhh
Confidence            35777776543

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=98.70  E-value=4.7e-08  Score=110.65  Aligned_cols=184  Identities=20%  Similarity=0.210  Sum_probs=112.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      .|+|+|.||||..|.+  +...|+||.+.   ++.|-.|-++        .  .+       ++-.+--|+.     =+.
T Consensus       567 q~lG~GAyGkV~lai~K~n~~eVViK~I~---KeRIL~DtWv--------r--Dr-------kLGtVp~EIq-----Ila  621 (772)
T KOG1152|consen  567 QPLGEGAYGKVNLAIHKENNYEVVIKMIF---KERILVDTWV--------R--DR-------KLGTVPSEIQ-----ILA  621 (772)
T ss_pred             eeccccccceEEEeeecccceEEEeeehh---hhhhhhhhhh--------c--cc-------ccCccchhHH-----HHH
Confidence            7999999999999999  47899999772   2233222211        1  11       1111111211     011


Q ss_pred             HHH--HHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEee-cCCCChhhhhhhhhcCCC--HHHHHHHHHHHHHHHHH
Q 004234          377 YTQ--EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEY-VPGIKINRIQSLDELGVD--RKRLGRYAVESYLEQIL  451 (766)
Q Consensus       377 f~~--EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEy-ieG~~L~d~~~l~~~g~d--~~~la~~lv~~~l~qI~  451 (766)
                      +.+  -..|+.++-..|.++.             .-+|+||- =+|+.|-|+...... ++  ...+.-.-+.+..+++|
T Consensus       622 ~l~~~sH~NIlKlLdfFEddd-------------~yyl~te~hg~gIDLFd~IE~kp~-m~E~eAk~IFkQV~agi~hlh  687 (772)
T KOG1152|consen  622 TLNKHSHENILKLLDFFEDDD-------------YYYLETEVHGEGIDLFDFIEFKPR-MDEPEAKLIFKQVVAGIKHLH  687 (772)
T ss_pred             HhhhcCccchhhhhheeecCC-------------eeEEEecCCCCCcchhhhhhccCc-cchHHHHHHHHHHHhcccccc
Confidence            111  1236666666665543             34677874 457777776554322 22  22233333445567789


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRR  530 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~  530 (766)
                      .+|++|||+|-+|+.++.  +|-++|||||.+......-    .+.    ..++.++++++++.- .+.....|++++.-
T Consensus       688 ~~~ivhrdikdenvivd~--~g~~klidfgsaa~~ksgp----fd~----f~gtv~~aapevl~g~~y~gk~qdiwalgi  757 (772)
T KOG1152|consen  688 DQGIVHRDIKDENVIVDS--NGFVKLIDFGSAAYTKSGP----FDV----FVGTVDYAAPEVLGGEKYLGKPQDIWALGI  757 (772)
T ss_pred             ccCceecccccccEEEec--CCeEEEeeccchhhhcCCC----cce----eeeeccccchhhhCCCccCCCcchhhhhhh
Confidence            999999999999999986  8999999999887653321    222    346788899988763 23344568888764


Q ss_pred             H
Q 004234          531 T  531 (766)
Q Consensus       531 ~  531 (766)
                      .
T Consensus       758 l  758 (772)
T KOG1152|consen  758 L  758 (772)
T ss_pred             e
Confidence            3

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.70  E-value=6.1e-09  Score=119.30  Aligned_cols=173  Identities=21%  Similarity=0.257  Sum_probs=110.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      .-+|||++|-||||+.  +|+.+|||+.+=...+.                            +.        .+.+|+-
T Consensus        21 qrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd----------------------------~~--------~iqqei~   64 (829)
T KOG0576|consen   21 QRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDD----------------------------FS--------GIQQEIG   64 (829)
T ss_pred             eeecCCcccchhhhcccccCchhhheeeeccCCcc----------------------------cc--------cccccee
Confidence            4699999999999999  69999999984222111                            11        1112222


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc--CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY--TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~--st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~--~l~qI~~  452 (766)
                      ..+|.+             +-.+|..+..|  -.+.+++||||.|+++.|+.... ..+...+++...-+.  -++.+|.
T Consensus        65 ~~~dc~-------------h~nivay~gsylr~dklwicMEycgggslQdiy~~T-gplselqiayvcRetl~gl~ylhs  130 (829)
T KOG0576|consen   65 MLRDCR-------------HPNIVAYFGSYLRRDKLWICMEYCGGGSLQDIYHVT-GPLSELQIAYVCRETLQGLKYLHS  130 (829)
T ss_pred             eeecCC-------------CcChHHHHhhhhhhcCcEEEEEecCCCcccceeeec-ccchhHHHHHHHhhhhccchhhhc
Confidence            222222             11112222212  23569999999999999965432 223444554443333  3788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC---CCCCCCHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV---LVPTGDTTAVR  529 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~---~~~~~D~~~l~  529 (766)
                      .|-+|||+|-+||++++  .|.+++.|||..++++...-..      .-..+.+..|++++..++.   .....|..++.
T Consensus       131 ~gk~hRdiKGanilltd--~gDvklaDfgvsaqitati~Kr------ksfiGtpywmapEvaaverkggynqlcdiwa~g  202 (829)
T KOG0576|consen  131 QGKIHRDIKGANILLTD--EGDVKLADFGVSAQITATIAKR------KSFIGTPYWMAPEVAAVERKGGYNQLCDIWALG  202 (829)
T ss_pred             CCcccccccccceeecc--cCceeecccCchhhhhhhhhhh------hcccCCccccchhHHHHHhcccccccccccccc
Confidence            99999999999999997  8999999999999987542211      1124577777777766543   33445666555

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=98.69  E-value=1.2e-08  Score=107.83  Aligned_cols=187  Identities=14%  Similarity=0.098  Sum_probs=122.1

Q ss_pred             CcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          297 DVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       297 d~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      +.+.||.|--|.|-.+..  +|+..|+||.+---+.                                         ++|
T Consensus        66 s~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~KA-----------------------------------------RrE  104 (400)
T KOG0604|consen   66 SWQVLGAGINGKVVQCVHKRTQEKFALKVLLDSPKA-----------------------------------------RRE  104 (400)
T ss_pred             hhhhhccccCCceEEEEeccchhhhHHHHHhcCHHH-----------------------------------------HhH
Confidence            447899999999999988  5999999987321111                                         122


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeecc-CC--CeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH--HHHHHH
Q 004234          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEY-TT--PQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLE  448 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-st--~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~l--v~~~l~  448 (766)
                      +++.--+         -.+..-|.|-.||... ..  -..+|||.++|+.|-....... ..+..++.++..  +...+.
T Consensus       105 VeLHw~~---------s~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~  175 (400)
T KOG0604|consen  105 VELHWMA---------SGHPHIVSIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVR  175 (400)
T ss_pred             hhhhhhh---------cCCCceEEeehhhhhhccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHH
Confidence            2221111         0111224455555432 12  2378999999999877443222 224444444433  334578


Q ss_pred             HHHhCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~  527 (766)
                      .+|..+|-|||+||+|+|+... ++-.++|.|||.++.-...   +..    -.-.-++.|++++.+.-.-.....|+++
T Consensus       176 ~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~---~~L----~TPc~TPyYvaPevlg~eKydkscdmwS  248 (400)
T KOG0604|consen  176 YLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEP---GDL----MTPCFTPYYVAPEVLGPEKYDKSCDMWS  248 (400)
T ss_pred             HHHhcchhhccCChhheeeecCCCCcceEecccccccccCCC---ccc----cCCcccccccCHHHhCchhcCCCCCccc
Confidence            8999999999999999999752 2346999999999875431   111    1123478888998877666667789999


Q ss_pred             HHHHHHHHHHHHH
Q 004234          528 VRRTAQFFLNSFE  540 (766)
Q Consensus       528 l~~~i~~~l~~~~  540 (766)
                      +...++.++-.|.
T Consensus       249 lgVimYIlLCGyP  261 (400)
T KOG0604|consen  249 LGVIMYILLCGYP  261 (400)
T ss_pred             hhHHHHHhhcCCC
Confidence            9999998887764

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=98.64  E-value=1.1e-07  Score=108.48  Aligned_cols=183  Identities=19%  Similarity=0.181  Sum_probs=122.0

Q ss_pred             ccccccceeEEEEEee----cCe--eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL----KGE--EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l----~G~--~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      ..||.|-||-||+|+.    +|+  .||||.=+.+....                              +          
T Consensus       395 r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d------------------------------~----------  434 (974)
T KOG4257|consen  395 RLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPD------------------------------D----------  434 (974)
T ss_pred             HhhcCCcccceeeeEecccccCcceeeeeehhccCCChh------------------------------h----------
Confidence            4699999999999998    244  57888653322111                              0          


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                      .| .|..||--|+.|.     +|+ |..--+..  ....++|||.++-+.|..+....+..++...+.-...+  ..+..
T Consensus       435 te-kflqEa~iMrnfd-----HphIikLIGv~~--e~P~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaY  506 (974)
T KOG4257|consen  435 TE-KFLQEASIMRNFD-----HPHIIKLIGVCV--EQPMWIVMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAY  506 (974)
T ss_pred             HH-HHHHHHHHHHhCC-----Ccchhheeeeee--ccceeEEEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence            11 5778887776652     233 22222221  24679999999999999887655555554444333322  34677


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +....|+|||+-..||||..  ...++|.|||+.+.++++.-..-.     ...--...|+++-+..-..+..+|++-|.
T Consensus       507 LeSkrfVHRDIAaRNiLVsS--p~CVKLaDFGLSR~~ed~~yYkaS-----~~kLPIKWmaPESINfRrFTtASDVWMFg  579 (974)
T KOG4257|consen  507 LESKRFVHRDIAARNILVSS--PQCVKLADFGLSRYLEDDAYYKAS-----RGKLPIKWMAPESINFRRFTTASDVWMFG  579 (974)
T ss_pred             HHhhchhhhhhhhhheeecC--cceeeecccchhhhccccchhhcc-----ccccceeecCccccchhcccchhhHHHHH
Confidence            88999999999999999985  567999999999999876432111     11224556777777776677777888777


Q ss_pred             HHHHHHH
Q 004234          530 RTAQFFL  536 (766)
Q Consensus       530 ~~i~~~l  536 (766)
                      .-+-+++
T Consensus       580 VCmWEIl  586 (974)
T KOG4257|consen  580 VCMWEIL  586 (974)
T ss_pred             HHHHHHH
Confidence            6554444

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=98.64  E-value=2.4e-08  Score=106.08  Aligned_cols=197  Identities=17%  Similarity=0.186  Sum_probs=111.6

Q ss_pred             hhhhhhccCcccccccceeEEEEEee-c--C---eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHH
Q 004234          289 LDDVFERFDVEPIAAASLGQVHRARL-K--G---EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (766)
Q Consensus       289 ~eeiF~~fd~~PIgsaSiGQVhrA~l-~--G---~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~  362 (766)
                      ++++|.+-...-||+|.+|.||+|+- +  +   .++|||..+-                         ..     |   
T Consensus        20 ve~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~-------------------------~k-----d---   66 (438)
T KOG0666|consen   20 VEDLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKG-------------------------EK-----D---   66 (438)
T ss_pred             HHHHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhc-------------------------cC-----C---
Confidence            34555443446799999999999976 2  2   2456653211                         00     0   


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc----CCCHH
Q 004234          363 IYDECASVLYQEIDYTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL----GVDRK  436 (766)
Q Consensus       363 i~~E~~~~l~~ElDf~~EA~--Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~----g~d~~  436 (766)
                       .+-++.+.-+|+-+.+|.+  |+..+            .+|+-......+|+.||.+- .|..++..-..    .+.+.
T Consensus        67 -~tGiS~SAcREiaL~REl~h~nvi~L------------v~Vfl~~d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~  132 (438)
T KOG0666|consen   67 -GTGISMSACREIALLRELKHPNVISL------------VKVFLSHDKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRS  132 (438)
T ss_pred             -CCCcCHHHHHHHHHHHHhcCCcchhH------------HHHHhccCceEEEEehhhhh-hHHHHHHHhccchhccCCHH
Confidence             0112334456777777765  34333            33444444567899999885 45554432211    22222


Q ss_pred             HHHHHHHHH--HHHHHHhCCccccCCCCCcEEEee--cCCCcEEEEeecceeccChhhHHHH--HHHHHHHhhcCHHHHH
Q 004234          437 RLGRYAVES--YLEQILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMGSISPNIREGL--LEAFYGIYEKDADKVL  510 (766)
Q Consensus       437 ~la~~lv~~--~l~qI~~~GffHaDpHPGNILV~~--~~~g~l~LiDFGlv~~L~~~~r~~l--~~l~~a~~~~D~~~v~  510 (766)
                      -+-..+.+.  .++.+|..=++|||+||.||+|..  ++.|++++.|+|+++.+.....-.+  -..++.+..+    +.
T Consensus       133 mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYR----AP  208 (438)
T KOG0666|consen  133 MVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYR----AP  208 (438)
T ss_pred             HHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEec----Ch
Confidence            222222222  245567788999999999999985  1238999999999987654332110  0011111112    22


Q ss_pred             HHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          511 QAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       511 ~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +.++..--.++..|++++.....+++
T Consensus       209 ELLLGa~hYT~AiDvWAiGCIfaElL  234 (438)
T KOG0666|consen  209 ELLLGARHYTKAIDVWAIGCIFAELL  234 (438)
T ss_pred             HHhcccccccchhhhHHHHHHHHHHH
Confidence            33334444577789999887665554

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=98.62  E-value=1.5e-07  Score=97.65  Aligned_cols=128  Identities=13%  Similarity=0.075  Sum_probs=83.5

Q ss_pred             CCCeEEEEeecCCCChhhhhhh-h--hcCCCHHHHHHHHHH--HHHHHHHhCC--ccccCCCCCcEEEeecCCCcEEEEe
Q 004234          407 TTPQILTMEYVPGIKINRIQSL-D--ELGVDRKRLGRYAVE--SYLEQILSHG--FFHADPHPGNIAVDDVNGGRLIFYD  479 (766)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l-~--~~g~d~~~la~~lv~--~~l~qI~~~G--ffHaDpHPGNILV~~~~~g~l~LiD  479 (766)
                      +...+|+..|..-+++.|.... .  +.-++..++......  ..++++|+..  +.|+|+||+||++.+  ++.+++.|
T Consensus        95 ~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~--~~~~vl~D  172 (302)
T KOG2345|consen   95 KHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSD--SGLPVLMD  172 (302)
T ss_pred             ceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecC--CCceEEEe
Confidence            4567999999888888875432 2  223556666655433  4589999988  999999999999986  79999999


Q ss_pred             ecceeccChh--hHHHHHHHH-HHHhhcCHHHHHHHHHH---cCCCCCCCCHHHHHHHHHHHH
Q 004234          480 FGMMGSISPN--IREGLLEAF-YGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       480 FGlv~~L~~~--~r~~l~~l~-~a~~~~D~~~v~~~l~~---lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ||.+...+-.  .+....++= .+--+=+..+=+|++..   -..++..+|++++.-.++.++
T Consensus       173 ~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~m  235 (302)
T KOG2345|consen  173 LGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMM  235 (302)
T ss_pred             ccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHH
Confidence            9999875432  122111110 01111122233455544   245667889999998776664

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.62  E-value=1.2e-07  Score=108.65  Aligned_cols=193  Identities=18%  Similarity=0.151  Sum_probs=119.8

Q ss_pred             CCChhhhhhccCcccccccceeEEEEEee--cCeeEE---EEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccch
Q 004234          286 GAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVV---VKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW  360 (766)
Q Consensus       286 G~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VA---VKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~  360 (766)
                      +.++...|-.|+. .||.|++=.||||.+  +|-+||   ||+.                   .+.+           + 
T Consensus        34 e~~p~gRy~k~~e-vLGrGafKtVYka~De~~giEVAWnqvk~~-------------------d~~q-----------~-   81 (632)
T KOG0584|consen   34 EKDPTGRYLKFDE-VLGRGAFKTVYKAFDEEEGIEVAWNQVKIR-------------------DVTQ-----------S-   81 (632)
T ss_pred             ccCCCCceeehhh-hcccccceeeeeccccccchhhHHHHHhHH-------------------Hhhc-----------C-
Confidence            4456667777775 699999999999998  466654   2211                   0100           0 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCC--eEEEEeecCCCChhhhhhhhhcCCCHHHH
Q 004234          361 VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTP--QILTMEYVPGIKINRIQSLDELGVDRKRL  438 (766)
Q Consensus       361 ~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~--~vLVMEyieG~~L~d~~~l~~~g~d~~~l  438 (766)
                          .+....+..|+.++.          .+++ ++|.--.-+|.-...  ..+++|.+.+++|..+.. +....+.+.+
T Consensus        82 ----~~~leR~~~Ev~lLK----------sL~H-~NIirfy~SW~d~~n~~in~iTEL~TSGtLr~Y~k-k~~~vn~kai  145 (632)
T KOG0584|consen   82 ----PEELERLYSEVHLLK----------SLKH-PNIIRFYDSWVDTDNKTINFITELFTSGTLREYRK-KHRRVNIKAI  145 (632)
T ss_pred             ----hHHHHHHHHHHHHHc----------cCCC-CceeeeeeheecCCCceeeeeeecccCCcHHHHHH-HhccCCHHHH
Confidence                111223333333222          2222 222222223332333  589999999999998753 2222344422


Q ss_pred             HHHH--HHHHHHHHHhC--CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004234          439 GRYA--VESYLEQILSH--GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  514 (766)
Q Consensus       439 a~~l--v~~~l~qI~~~--GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~  514 (766)
                      -...  +..-|+.+|.+  -++|||+|-.||||+. +.|.++|.|.|++..+....-        +-+-++|+.|+++|.
T Consensus       146 k~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG-~~G~VKIGDLGLAtl~r~s~a--------ksvIGTPEFMAPEmY  216 (632)
T KOG0584|consen  146 KSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNG-NLGEVKIGDLGLATLLRKSHA--------KSVIGTPEFMAPEMY  216 (632)
T ss_pred             HHHHHHHHHHhhhhhcCCCCccccccccceEEEcC-CcCceeecchhHHHHhhcccc--------ceeccCccccChHHH
Confidence            2111  11224445543  5999999999999996 689999999999987654432        224579999999999


Q ss_pred             HcCCCCCCCCHHHHHHHHHHHH
Q 004234          515 QMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       515 ~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +-++ ....|+|+|.--+-++.
T Consensus       217 EE~Y-nE~VDVYaFGMCmLEMv  237 (632)
T KOG0584|consen  217 EENY-NELVDVYAFGMCMLEMV  237 (632)
T ss_pred             hhhc-chhhhhhhhhHHHHHHH
Confidence            9664 67889999987665554

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.59  E-value=3.4e-07  Score=93.81  Aligned_cols=105  Identities=22%  Similarity=0.291  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccC------CCeEEEEeecCCC-Chhhhhhhh-hcCC-CHHHHHHHHHHHH
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYT------TPQILTMEYVPGI-KINRIQSLD-ELGV-DRKRLGRYAVESY  446 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s------t~~vLVMEyieG~-~L~d~~~l~-~~g~-d~~~la~~lv~~~  446 (766)
                      ...+|.+|+.++.+     .+|.+|+++.-..      .+.+|+||+++|. +|.++.... .... ....+.. .+..+
T Consensus        57 ra~~E~~~~~~L~~-----~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~~~~~~~~~ll~-~l~~~  130 (206)
T PF06293_consen   57 RAKREWRNLQRLRE-----AGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQLDPSQRRELLR-ALARL  130 (206)
T ss_pred             HHHHHHHHHHHHHH-----cCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcccchhhHHHHHH-HHHHH
Confidence            46678888888876     3577777765222      2348999999995 688765321 1111 1223333 34456


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCC---cEEEEeecceeccCh
Q 004234          447 LEQILSHGFFHADPHPGNIAVDDVNGG---RLIFYDFGMMGSISP  488 (766)
Q Consensus       447 l~qI~~~GffHaDpHPGNILV~~~~~g---~l~LiDFGlv~~L~~  488 (766)
                      +..+|..|++|+|++|+|||++.  ++   ++.+|||+-+..-..
T Consensus       131 i~~lH~~gi~H~Dl~~~NILv~~--~~~~~~~~lIDld~~~~~~~  173 (206)
T PF06293_consen  131 IAKLHDAGIYHGDLNPSNILVDP--DDGQYRFYLIDLDRMRFRPS  173 (206)
T ss_pred             HHHHHHCcCCCCCCCcccEEEeC--CCCceeEEEEcchhceeCCC
Confidence            78899999999999999999986  43   799999998876553

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=98.54  E-value=7.9e-07  Score=90.97  Aligned_cols=184  Identities=17%  Similarity=0.175  Sum_probs=111.9

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      ..+|.|++|+||+|... ..+++|+..+......                                       .....|.
T Consensus         6 ~~l~~g~~~~v~~~~~~-~~~~~k~~~~~~~~~~---------------------------------------~~~~~~~   45 (384)
T COG0515           6 RKLGEGSFGEVYLARDR-KLVALKVLAKKLESKS---------------------------------------KEVERFL   45 (384)
T ss_pred             EeecCCCCeEEEEEEec-cEEEEEeechhhccch---------------------------------------hHHHHHH
Confidence            46889999999999998 8899998855433221                                       0112333


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccC--CCeEEEEeecCCCChhhhhhhhhc--CCCHHHHHHHHHHH--HHHHHHh
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRYAVES--YLEQILS  452 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s--t~~vLVMEyieG~~L~d~~~l~~~--g~d~~~la~~lv~~--~l~qI~~  452 (766)
                      +|..-...    +.+.+  .+...+..+.  ...+++|+|+.|..+.++......  ............+.  .+..+|.
T Consensus        46 ~e~~~~~~----~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~  119 (384)
T COG0515          46 REIQILAS----LNHPP--NIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHS  119 (384)
T ss_pred             HHHHHHHH----ccCCc--ceeeEEEEEecCCEEEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            33332222    22221  2223322222  225999999999999965432221  23333333332222  2568999


Q ss_pred             CCccccCCCCCcEEEeecCCC-cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc---CCCCCCCCHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGG-RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM---GVLVPTGDTTAV  528 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g-~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l---G~~~~~~D~~~l  528 (766)
                      .|++|+|++|.||+++.  .+ .++++|||++..+.................+...++.++....   +......|.+++
T Consensus       120 ~~~~hrd~kp~nil~~~--~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~  197 (384)
T COG0515         120 KGIIHRDIKPENILLDR--DGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSL  197 (384)
T ss_pred             CCeeccCCCHHHeeecC--CCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHH
Confidence            99999999999999985  55 7999999999866554322110011222345677777887765   456667788866


Q ss_pred             HH
Q 004234          529 RR  530 (766)
Q Consensus       529 ~~  530 (766)
                      ..
T Consensus       198 g~  199 (384)
T COG0515         198 GI  199 (384)
T ss_pred             HH
Confidence            63

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.52  E-value=1.3e-06  Score=88.36  Aligned_cols=140  Identities=27%  Similarity=0.397  Sum_probs=80.9

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +|++.|..++||+...++..+++|+-++.  ..                                          .-...
T Consensus         3 ~~l~~G~~n~~~~v~~~~~~~vlK~~~~~--~~------------------------------------------~~~~~   38 (239)
T PF01636_consen    3 RPLSGGFSNRVYRVTTDDGRYVLKFYRPP--DA------------------------------------------AERLR   38 (239)
T ss_dssp             EEEEESSSSEEEEEEETTSEEEEEEESSH--HH------------------------------------------HHHHH
T ss_pred             ccCCCCCeeeEEEEEECCcEEEEEEeCCC--CC------------------------------------------HHHHH
Confidence            68999999999999996679999987553  00                                          11233


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeee-----ccCCCeEEEEeecCCCChhh------hh-----------hhhhc--C--
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINR------IQ-----------SLDEL--G--  432 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~-----e~st~~vLVMEyieG~~L~d------~~-----------~l~~~--g--  432 (766)
                      .|+..+..+.+.     .+.+|+++.     ......+++|+|++|.++.+      ..           .+...  .  
T Consensus        39 ~e~~~~~~l~~~-----~~pvP~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~  113 (239)
T PF01636_consen   39 REAAVLRQLAEH-----GIPVPRVLAFDTSDEFNGFPYLLMEYIPGRPLDDELSPEQRPELLRQLGRALAQLHQVPPPFS  113 (239)
T ss_dssp             HHHHHHHHHHHT-----TSBS--EEEEEEETEETSEEEEEEEEESSEEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCC
T ss_pred             HHHHHHHHHHhc-----CCCCceEEeecccccccccceEEEEEeccccccccccccccccccccchhhhhhccccccccc
Confidence            455555555542     236888887     22334689999999998887      00           00000  0  


Q ss_pred             -CC--H--------H------------------HHHHHHHHHHHHHHH---hCCccccCCCCCcEEEeecCCCcEEEEee
Q 004234          433 -VD--R--------K------------------RLGRYAVESYLEQIL---SHGFFHADPHPGNIAVDDVNGGRLIFYDF  480 (766)
Q Consensus       433 -~d--~--------~------------------~la~~lv~~~l~qI~---~~GffHaDpHPGNILV~~~~~g~l~LiDF  480 (766)
                       ..  .        .                  .+...+++.+.....   ..+++|+|+||+||++++ .++++.++||
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HgD~~~~Nil~~~-~~~~i~iID~  192 (239)
T PF01636_consen  114 PFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQELEALLPKPLPPVLIHGDLHPGNILVDP-SDGRIGIIDF  192 (239)
T ss_dssp             CHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCSCEEEE-SS-SGGGEEEES-STTEEEE--G
T ss_pred             ccccccccccccccccccccccccchhhhhhhHHHHHHHHHHHHhhhccCCCcEEEEeccccccceeee-ccceeEEEec
Confidence             00  0        0                  000001111111221   356999999999999983 3677889999


Q ss_pred             cceeccCh
Q 004234          481 GMMGSISP  488 (766)
Q Consensus       481 Glv~~L~~  488 (766)
                      +.++.-++
T Consensus       193 e~a~~~~~  200 (239)
T PF01636_consen  193 EDAGWGDP  200 (239)
T ss_dssp             TT-EEEET
T ss_pred             ccceECCH
Confidence            99887654

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.51  E-value=1.9e-08  Score=104.20  Aligned_cols=186  Identities=15%  Similarity=0.190  Sum_probs=104.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..+|+|.||.|++|+.  .|+.||+|..                    +++.   +..+  +         -..-.+|++
T Consensus        23 ~kigqGtfgeVFkAr~~n~~kkvalkkv--------------------lmen---eKeG--f---------pitalreik   68 (376)
T KOG0669|consen   23 AKIGQGTFGEVFKARSKNTGKKVALKKV--------------------LMEN---EKEG--F---------PITALREIK   68 (376)
T ss_pred             HhcCCchHHHHHHHhhcCccchhHHHHH--------------------HHhc---cccC--C---------cHHHHHHHH
Confidence            4699999999999998  4888998854                    1110   0001  1         112223444


Q ss_pred             HHHH-----HHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHH
Q 004234          377 YTQE-----AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQ  449 (766)
Q Consensus       377 f~~E-----A~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~--lv~~~l~q  449 (766)
                      ...-     ..|+..+.+.+... ..       .+....+|||.+|+. .|.-+.......+....|-..  .+-..+..
T Consensus        69 iL~~lkHenv~nliEic~tk~Tp-~~-------r~r~t~ylVf~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~  139 (376)
T KOG0669|consen   69 ILQLLKHENVVNLIEICRTKATP-TN-------RDRATFYLVFDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLMNGLYY  139 (376)
T ss_pred             HHHHhcchhHHHHHHHHhhccCC-cc-------cccceeeeeHHHhhh-hHHHHhcCccccccHHHHHHHHHHHHHHHHH
Confidence            4332     12444444433321 11       123447999999974 222222222222333333322  23345788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhH---HHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR---EGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r---~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~  526 (766)
                      ||+..++|||+||.|++|+.  +|.++|.|||+++.++....   ..|..-++.+..+.++.+    +.-.-..+..|++
T Consensus       140 iHr~kilHRDmKaaNvLIt~--dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEll----LG~r~yg~~iDiW  213 (376)
T KOG0669|consen  140 IHRNKILHRDMKAANVLITK--DGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELL----LGDREYGPPIDIW  213 (376)
T ss_pred             HHHhhHHhhcccHhhEEEcC--CceEEeeccccccceecccccCCCCcccceeeeecCCHHHh----hcccccCCcchhH
Confidence            99999999999999999986  89999999999987754321   113333333333444332    1122234667877


Q ss_pred             HHHHHHH
Q 004234          527 AVRRTAQ  533 (766)
Q Consensus       527 ~l~~~i~  533 (766)
                      .-.-.+.
T Consensus       214 gAgCima  220 (376)
T KOG0669|consen  214 GAGCIMA  220 (376)
T ss_pred             hHHHHHH
Confidence            6655443

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=98.50  E-value=5.9e-08  Score=103.59  Aligned_cols=129  Identities=18%  Similarity=0.214  Sum_probs=89.1

Q ss_pred             cccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhCCccccCCCCCcEEEeecCCCc
Q 004234          397 VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSHGFFHADPHPGNIAVDDVNGGR  474 (766)
Q Consensus       397 V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~--~l~qI~~~GffHaDpHPGNILV~~~~~g~  474 (766)
                      +..|.-..+.-.+.++|||++++ .+..+..   ...|.+.+.....+.  ..+.+|..|++|||+||.||++..  ++.
T Consensus        83 ~ftP~~~l~~~~e~y~v~e~m~~-nl~~vi~---~elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~--~~~  156 (369)
T KOG0665|consen   83 VFTPQKTLEEFQEVYLVMELMDA-NLCQVIL---MELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNS--DCT  156 (369)
T ss_pred             ccCccccHHHHHhHHHHHHhhhh-HHHHHHH---HhcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecc--hhh
Confidence            44454444444567999999986 3444433   345666666555553  478899999999999999999986  889


Q ss_pred             EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Q 004234          475 LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNS  538 (766)
Q Consensus       475 l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~~  538 (766)
                      ++++|||++..-+..++.  ...    +..-+..+.+..+.+| ..+..|++++.-.+-+++..
T Consensus       157 lKi~dfg~ar~e~~~~~m--tpy----VvtRyyrapevil~~~-~ke~vdiwSvGci~gEli~~  213 (369)
T KOG0665|consen  157 LKILDFGLARTEDTDFMM--TPY----VVTRYYRAPEVILGMG-YKENVDIWSVGCIMGELILG  213 (369)
T ss_pred             eeeccchhhcccCccccc--Cch----hheeeccCchheeccC-CcccchhhhhhhHHHHHhhc
Confidence            999999999987665321  111    1122344556777888 67788999988776666543

>PRK10593 hypothetical protein; Provisional

Probab=98.48  E-value=6.3e-06  Score=89.37  Aligned_cols=94  Identities=20%  Similarity=0.222  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCC
Q 004234          275 ETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD  354 (766)
Q Consensus       275 ~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~  354 (766)
                      +.+++.+.+.+|..+.      +.++|+.|.+++||+....+..+++|+.+.....                        
T Consensus         2 ~~~~~~~~~~~~~~~~------~~~~i~~G~~~~vy~~~~~~~~~~~k~~~~~~~~------------------------   51 (297)
T PRK10593          2 EQLRAELSHLLGEKLS------RVECISEQPYAALWALYDSQGNPMPLMARSFSTP------------------------   51 (297)
T ss_pred             hHHHHHHHHHhchhhh------eeeecCCccceeEEEEEcCCCCEEEEEecccccc------------------------
Confidence            3456667777775433      2379999999999999885446888986321110                        


Q ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeecc-----CCCeEEEEeecCCCCh
Q 004234          355 GAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY-----TTPQILTMEYVPGIKI  422 (766)
Q Consensus       355 ~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-----st~~vLVMEyieG~~L  422 (766)
                                          -.|..|+.++..+++.    ..|.||+|+...     .+..+|||||++|.++
T Consensus        52 --------------------~~~~~Ea~~L~~L~~~----~~vpVP~V~~~~~~~~~~g~~~LVmE~i~G~~~  100 (297)
T PRK10593         52 --------------------GVAQQEAWKLSMLARS----GTVRMPTVYGVMTHEQSPGPDVLLLERLRGVSV  100 (297)
T ss_pred             --------------------hHHHHHHHHHHHHccC----CCCCcCcEEEEeccCCcCCCeEEEEeccCCEec
Confidence                                1456788888887642    358999999622     3568999999999876

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=98.46  E-value=2.5e-07  Score=105.17  Aligned_cols=179  Identities=15%  Similarity=0.075  Sum_probs=112.4

Q ss_pred             ccccccceeEEEEEeec--CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~--G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..+|-|.+|.||.|+|+  .-.||||.++.+.-+                                          -| .
T Consensus       273 hKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMe------------------------------------------ve-E  309 (1157)
T KOG4278|consen  273 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME------------------------------------------VE-E  309 (1157)
T ss_pred             eccCCCcccceeeeeeeccceeeehhhhhhcchh------------------------------------------HH-H
Confidence            57999999999999993  788999976332110                                          01 3


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHH--HHHHHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRY--AVESYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~--lv~~~l~qI~~~  453 (766)
                      |+.||.-|..+.+     +++.----+..+.-..|+++|||.-+.|-|+..-.. ..+..--+...  .+...+..+-..
T Consensus       310 FLkEAAvMKeikH-----pNLVqLLGVCT~EpPFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkk  384 (1157)
T KOG4278|consen  310 FLKEAAVMKEIKH-----PNLVQLLGVCTHEPPFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKK  384 (1157)
T ss_pred             HHHHHHHHHhhcC-----ccHHHHhhhhccCCCeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHh
Confidence            5566665554421     111100011112235689999999888888754221 11222222222  233446667789


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      +|+|+|+-..|.||.+  +.-+++.|||+++.++.++...     .|-..--+..-+++-+.....+-..|+++|...+
T Consensus       385 nFIHRDLAARNCLVgE--nhiVKvADFGLsRlMtgDTYTA-----HAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLL  456 (1157)
T KOG4278|consen  385 NFIHRDLAARNCLVGE--NHIVKVADFGLSRLMTGDTYTA-----HAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLL  456 (1157)
T ss_pred             hhhhhhhhhhhccccc--cceEEeeccchhhhhcCCceec-----ccCccCcccccCcccccccccccchhhHHHHHHH
Confidence            9999999999999986  7789999999999988765432     2222333444555555555566678998887644

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.45  E-value=8.4e-06  Score=84.94  Aligned_cols=164  Identities=22%  Similarity=0.260  Sum_probs=93.4

Q ss_pred             cccccc-eeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAAS-LGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       300 PIgsaS-iGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      ||..|. -++||+...++..++||+..+.-                                             .-++.
T Consensus         5 ~~~~g~~~~~v~~~~~~~~~~~vk~~~~~~---------------------------------------------~~~~~   39 (244)
T cd05150           5 RVTEGQSGATVYRLDGKNPGLYLKIAPSGP---------------------------------------------TYELE   39 (244)
T ss_pred             ecCCCCCcCeEEEEcCCCCcEEEEecCCCc---------------------------------------------ccchH
Confidence            454544 48999998877899999873321                                             01234


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCC--CeEEEEeecCCCChhhhhh-----------------hhhc-----CCC
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTT--PQILTMEYVPGIKINRIQS-----------------LDEL-----GVD  434 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st--~~vLVMEyieG~~L~d~~~-----------------l~~~-----g~d  434 (766)
                      .|++.+..+.+.      +.+|+++.....  ..+++|||++|.++.+...                 +...     ...
T Consensus        40 ~E~~~l~~l~~~------~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~~~~~~~~~~~l~~~l~~lH~i~~~~~~~~  113 (244)
T cd05150          40 REAERLRWLAGK------LPVPEVIDYGSDDGRAWLLTSAVPGVPAAALWEELEPERLVDALAEALRRLHALPVADCPFD  113 (244)
T ss_pred             HHHHHHHHHHhc------CCCCeEEEEEecCCccEEEEEeeCCccHhHhhcccCHHHHHHHHHHHHHHHhcCCcccCCcc
Confidence            566666666532      678999864433  4699999999998875310                 0000     000


Q ss_pred             H---HHHHH--HH-------------------HHHHHHHHH-------hCCccccCCCCCcEEEeecCCCcEEEEeecce
Q 004234          435 R---KRLGR--YA-------------------VESYLEQIL-------SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM  483 (766)
Q Consensus       435 ~---~~la~--~l-------------------v~~~l~qI~-------~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv  483 (766)
                      .   ..+..  ..                   ....+..+.       ...++|+|+||+||++++  ++.+.+|||+.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~~--~~~~~iIDwe~a  191 (244)
T cd05150         114 RRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELEATRPAEEDLVVTHGDACLPNIIVDP--GKFSGFIDLGRL  191 (244)
T ss_pred             hhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHHHhhCCCcCceEEECCCCCCccEEEeC--CcEEEEEEcccc
Confidence            0   00000  00                   111122221       245899999999999985  556789999999


Q ss_pred             eccChhhHHHHHHHHHHHhh--cCHHHHHHHHHHcCC
Q 004234          484 GSISPNIREGLLEAFYGIYE--KDADKVLQAMVQMGV  518 (766)
Q Consensus       484 ~~L~~~~r~~l~~l~~a~~~--~D~~~v~~~l~~lG~  518 (766)
                      +.-++..  .++-++.....  ++.......+...|.
T Consensus       192 ~~gdp~~--Dla~~~~~~~~~~~~~~~~~~f~~~Y~~  226 (244)
T cd05150         192 GVADRYQ--DLALAVRSLRENLGGEEYAARFLDRYGI  226 (244)
T ss_pred             ccccHHH--HHHHHHHHhhhhcCChHHHHHHHHHcCC
Confidence            8655432  23333322221  134445444444554

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.44  E-value=1.6e-06  Score=90.31  Aligned_cols=136  Identities=18%  Similarity=0.214  Sum_probs=81.4

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +||++|.-+-||+.  .|..+++|+.+|+....                                            +..
T Consensus         7 ~~i~~G~t~~~y~~--~~~~~VlR~~~~~~~~~--------------------------------------------~i~   40 (226)
T TIGR02172         7 TQTGEGGNGESYTH--KTGKWMLKLYNPGFDKE--------------------------------------------TIK   40 (226)
T ss_pred             eeecCCCCcceeEe--cCCCEEEEeCCCCCCHH--------------------------------------------HHH
Confidence            79999999999984  36678899886643111                                            224


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeec--cCCCeEEEEeecCCCC-hhhhh---------------h----hhh---cCC
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIK-INRIQ---------------S----LDE---LGV  433 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e--~st~~vLVMEyieG~~-L~d~~---------------~----l~~---~g~  433 (766)
                      +|++.+..+.+     ..+.+|+++.-  .+....++|||++|.+ +.+..               .    +..   .+.
T Consensus        41 ~E~~~l~~l~~-----~glpvP~~~~~~~~~~~~glv~e~i~G~~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~  115 (226)
T TIGR02172        41 REFDASRKVFS-----LGIPTPHPFDLVEDGGRLGLIYELIVGKRSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTS  115 (226)
T ss_pred             HHHHHHHHHHH-----cCCCCCceEEEEecCCeeeeeeeecCCccchhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            56666666643     24678888753  4455688999999974 11110               0    000   011


Q ss_pred             CHHHHHHH-----------------HHHHHHHHH-HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004234          434 DRKRLGRY-----------------AVESYLEQI-LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       434 d~~~la~~-----------------lv~~~l~qI-~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (766)
                      ........                 .+..++..+ -...+.|+|+|||||++++  ++ +.+|||+.++.=++
T Consensus       116 ~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~HgD~~~~Nii~~~--~~-~~iIDwe~a~~Gdp  185 (226)
T TIGR02172       116 TFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTCLHGDFQIGNLITSG--KG-TYWIDLGDFGYGNP  185 (226)
T ss_pred             cHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCceEecCCCCCcEEEcC--CC-cEEEechhcCcCCH
Confidence            10000000                 011111111 1345789999999999985  55 99999999886544

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=98.42  E-value=1.8e-06  Score=102.44  Aligned_cols=180  Identities=15%  Similarity=0.082  Sum_probs=113.9

Q ss_pred             cccccceeEEEEEeec---------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (766)
Q Consensus       300 PIgsaSiGQVhrA~l~---------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (766)
                      ++|+|.||||++|.+.         ...||||..+....+.-                                      
T Consensus       303 ~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~--------------------------------------  344 (609)
T KOG0200|consen  303 YLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSE--------------------------------------  344 (609)
T ss_pred             eeecccccceEeEEEeecccccccceEEEEEEecccccCcHH--------------------------------------
Confidence            9999999999999972         24799998765544310                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCC
Q 004234          371 LYQEIDYTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVD  434 (766)
Q Consensus       371 l~~ElDf~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d  434 (766)
                         .-++..|...+....    .+++ +........ .+..++++||++.+.|.++.....               ..+.
T Consensus       345 ---~~~~~~El~~m~~~g----~H~niv~llG~~t~-~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~  416 (609)
T KOG0200|consen  345 ---KKDLMSELNVLKELG----KHPNIVNLLGACTQ-DGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALT  416 (609)
T ss_pred             ---HHHHHHHHHHHHHhc----CCcchhhheeeecc-CCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcC
Confidence               112233333333322    1222 222222212 556899999999999998765433               1144


Q ss_pred             HHHHHHHHHHHH--HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhc-----CHH
Q 004234          435 RKRLGRYAVESY--LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEK-----DAD  507 (766)
Q Consensus       435 ~~~la~~lv~~~--l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~-----D~~  507 (766)
                      ...+.....+..  ++.+....++|||+-.-|||+..  +..+++.|||+++...+..-..        ..+     -..
T Consensus       417 ~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVLi~~--~~~~kIaDFGlar~~~~~~~y~--------~~~~~~~LP~k  486 (609)
T KOG0200|consen  417 TKDLLSFAYQIANGMEYLASVPCVHRDLAARNVLITK--NKVIKIADFGLARDHYNKDYYR--------TKSSAGTLPVK  486 (609)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCccchhhhhhhEEecC--CCEEEEccccceeccCCCCceE--------ecCCCCcccee
Confidence            444444444433  55567889999999999999985  6789999999999654432110        011     123


Q ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          508 KVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       508 ~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      .|+++-+.-...+..+|++++...+.++
T Consensus       487 WmApEsl~~~~ft~kSDVWSfGI~L~Ei  514 (609)
T KOG0200|consen  487 WMAPESLFDRVFTSKSDVWSFGILLWEI  514 (609)
T ss_pred             ecCHHHhccCcccccchhhHHHHHHHHH
Confidence            5666666666777888999998755443

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=98.41  E-value=5.9e-07  Score=94.25  Aligned_cols=120  Identities=17%  Similarity=0.209  Sum_probs=73.7

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceecc
Q 004234          407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  486 (766)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L  486 (766)
                      ++--|.+|||++-++|..-..-...|..........+...+..+|..+++|||+|.+||||-+.+.-+++|+|||.....
T Consensus        94 ~d~YvF~qE~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~  173 (378)
T KOG1345|consen   94 SDAYVFVQEFAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKV  173 (378)
T ss_pred             CceEEEeeccCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeeccccccc
Confidence            34568999999998887632222222222223333344567889999999999999999997655669999999999876


Q ss_pred             ChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHH
Q 004234          487 SPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRT  531 (766)
Q Consensus       487 ~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~~  531 (766)
                      +.....     .-....-.+..+.+.+.+-. ...|..|..+|.-.
T Consensus       174 g~tV~~-----~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi  214 (378)
T KOG1345|consen  174 GTTVKY-----LEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGII  214 (378)
T ss_pred             Cceehh-----hhhhcccCCcHHHhhccccceEecccccchheeee
Confidence            543211     11111222333333332222 23456688777643

>PRK05231 homoserine kinase; Provisional

Probab=98.35  E-value=6.4e-06  Score=89.38  Aligned_cols=50  Identities=8%  Similarity=0.090  Sum_probs=34.6

Q ss_pred             CCCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEeecCeeEEEEEec
Q 004234          270 PPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQR  325 (766)
Q Consensus       270 pp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqr  325 (766)
                      .+++.+++..++ +.+|.  .++   .+.++++.|...++|+...++..+++|+.+
T Consensus         5 t~ls~~~l~~~l-~~y~~--~~~---~~~~~l~~G~~n~~y~v~t~~g~~vLK~~~   54 (319)
T PRK05231          5 TDVSDDELAAFL-APYDL--GEL---LSLKGIAEGIENSNFFLTTTQGEYVLTLFE   54 (319)
T ss_pred             ccCCHHHHHHHH-HhcCC--chh---hccchhccccccceEEEEeCCCcEEEEEec
Confidence            456677777777 55664  111   123689999999999998855578999763

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=98.29  E-value=1.1e-05  Score=88.51  Aligned_cols=188  Identities=17%  Similarity=0.173  Sum_probs=121.4

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      -.|..|--|-||.|+- +|..+||||-+..|----.+|-.+    ..=+ ++  ....++-++..++.-++         
T Consensus       150 GCiSTGKEANVYHat~~dG~~~AIKIYKTSILvFKDRdRYV----~GEf-RF--Rhgyck~NPRKMVk~WA---------  213 (520)
T KOG2270|consen  150 GCISTGKEANVYHATEEDGSEFAIKIYKTSILVFKDRDRYV----SGEF-RF--RHGYCKHNPRKMVKTWA---------  213 (520)
T ss_pred             cccccCccceeEeeecCCCceEEEEEEeeeEEEEechhhhc----ccee-ee--ecccccCCcHHHHHHHH---------
Confidence            3788899999999999 899999999877664332222111    0000 00  01123446666766554         


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHhCC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~---la~~lv~~~l~qI~~~G  454 (766)
                      ..|.+|+.+++.     ..|.+|+++  +-...||||+|+.+-... ...+....+.+..   +-..++..+-.+....+
T Consensus       214 EKE~RNLkRl~~-----aGIP~PePI--lLk~hVLVM~FlGrdgw~-aPkLKd~~ls~~ka~~~Y~~~v~~MR~lY~~c~  285 (520)
T KOG2270|consen  214 EKEMRNLKRLNN-----AGIPCPEPI--LLKNHVLVMEFLGRDGWA-APKLKDASLSTSKARELYQQCVRIMRRLYQKCR  285 (520)
T ss_pred             HHHHHHHHHHHh-----cCCCCCCce--eeecceEeeeeccCCCCc-CcccccccCChHHHHHHHHHHHHHHHHHHHHhc
Confidence            357899999864     458888888  467789999999642211 1112223333222   22222322223334689


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~  520 (766)
                      .+|+|+.--|+|+.   +|++.+||-+.+...+......++       ..|...+-.-+.++|+..
T Consensus       286 LVHADLSEfN~Lyh---dG~lyiIDVSQSVE~DHP~aldFL-------RmDc~NVn~FF~r~gv~v  341 (520)
T KOG2270|consen  286 LVHADLSEFNLLYH---DGKLYIIDVSQSVEHDHPHALDFL-------RMDCNNVNDFFRRLGVAV  341 (520)
T ss_pred             eeccchhhhhheEE---CCEEEEEEccccccCCChhHHHHH-------HHHHHHHHHHHHHcCCee
Confidence            99999999999996   799999999998888776554443       347777778888888644

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.23  E-value=7.7e-07  Score=108.57  Aligned_cols=128  Identities=6%  Similarity=-0.092  Sum_probs=78.7

Q ss_pred             CeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEee-----------------
Q 004234          409 PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDD-----------------  469 (766)
Q Consensus       409 ~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~-----------------  469 (766)
                      ..+++|||++ .+|.++.......++...+...+.+  ..+..+|..|++|+|+||.|||+..                 
T Consensus        54 ~~~~~~e~~~-~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~  132 (793)
T PLN00181         54 SIVRALECED-VSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGS  132 (793)
T ss_pred             hhhhhhccCC-ccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhCCeeeccCCchhEEEcccCcEEEeeccccCcccc
Confidence            4578899874 4888876433333555555444333  3477899999999999999999963                 


Q ss_pred             cCCCcEEEEeecceeccChhhHHHHHHH----------HHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          470 VNGGRLIFYDFGMMGSISPNIREGLLEA----------FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       470 ~~~g~l~LiDFGlv~~L~~~~r~~l~~l----------~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      ..++.+++.|||+++.........+...          ......+.+.|++|+++..+-.....|++++.-.+.+++.
T Consensus       133 ~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~  210 (793)
T PLN00181        133 DEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFC  210 (793)
T ss_pred             cccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhh
Confidence            0133455555555543211000000000          0011224566899998876667788999999988877764

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=98.21  E-value=6.6e-05  Score=84.68  Aligned_cols=111  Identities=23%  Similarity=0.239  Sum_probs=67.8

Q ss_pred             CCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEee-cC-eeEEEEEecCCccchHHHHHHHHHHHHHHHhh
Q 004234          271 PFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KG-EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQK  348 (766)
Q Consensus       271 p~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l-~G-~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~  348 (766)
                      ++..+.+...+.+..|.-  +--+..+.++++.|-+..||+..+ +| +.|+||...|.++..                 
T Consensus         6 ~l~~~~v~~yl~~~~~~~--~~~~~~~~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~-----------------   66 (401)
T PRK09550          6 TLTEEDAVEYAALKLGLF--DPKALLTAREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVV-----------------   66 (401)
T ss_pred             eCCHhHHHHHHHHhcCCC--CCcccceeeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccc-----------------
Confidence            445555555554433310  001233457999999999999999 56 599999876654311                 


Q ss_pred             cCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCCh
Q 004234          349 IDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKI  422 (766)
Q Consensus       349 ~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L  422 (766)
                        +.      .|.-         ..+ .+..|++.+..+.+.    ....+|+||..-....++||||+++.++
T Consensus        67 --g~------~wpl---------~~e-R~~~Eae~L~~l~~~----~p~~VPkV~~~D~~~~~lVME~L~~~~~  118 (401)
T PRK09550         67 --GE------SWPL---------TLD-RARIEAEALKIQAKY----VPDLVPKVYHYDEELAVTVMEDLSDHKI  118 (401)
T ss_pred             --cc------cccc---------cHH-HHHHHHHHHHHHHhh----CCCCCCeEEEECCCCCEEEEecCCCccH
Confidence              00      0100         001 234566666666543    2357999998766778999999998653

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=98.21  E-value=3.5e-05  Score=80.19  Aligned_cols=35  Identities=40%  Similarity=0.692  Sum_probs=27.6

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (766)
                      ..+++|+|+||+||++++  ++...++||+.+..=++
T Consensus       163 ~~~l~HGD~~~~Nvlv~~--~~i~giIDw~~a~~gDp  197 (235)
T cd05155         163 PPVWFHGDLAPGNLLVQD--GRLSAVIDFGCLGVGDP  197 (235)
T ss_pred             CceEEeCCCCCCcEEEEC--CCEEEEEeCcccCcCCh
Confidence            346899999999999973  33356999999876555

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=98.20  E-value=2.8e-06  Score=92.77  Aligned_cols=180  Identities=13%  Similarity=0.130  Sum_probs=105.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      .-+|.|.||+|-.+.+  .+..|||||.+               .+.+                      .++...    
T Consensus        95 ~~lGeGtFGkV~ec~D~~~~~~vAlKIik---------------~V~k----------------------YreAa~----  133 (415)
T KOG0671|consen   95 DLLGEGTFGKVVECWDRETKEHVALKIIK---------------NVDK----------------------YREAAL----  133 (415)
T ss_pred             hhhcCCcccceEEEeecCCCceehHHHHH---------------HHHH----------------------HhhHHH----
Confidence            4699999999999998  48899999762               1111                      111111    


Q ss_pred             HHHHHHHHHHHHHhcCC-CCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHH---HHHHHHHHHHHHHH
Q 004234          377 YTQEAANAELFASNFKD-MDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKR---LGRYAVESYLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~-~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~---la~~lv~~~l~qI~  451 (766)
                        .|.+-++++.+.-.. ...+..-.-+-+|-+..++|.|.+ |.++.|.... .-..+....   ++..++++ +.-+|
T Consensus       134 --iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~s-v~fLh  209 (415)
T KOG0671|consen  134 --IEIEVLQKINESDPNGKFRCVQMRDWFDYRGHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLES-VAFLH  209 (415)
T ss_pred             --HHHHHHHHHHhcCCCCceEEEeeehhhhccCceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHH-HHHHH
Confidence              222333344332111 011222222346778889999976 5555564321 111222333   23333332 56678


Q ss_pred             hCCccccCCCCCcEEEeec------------------CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDV------------------NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~------------------~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l  513 (766)
                      ..+++|.|+||+||++...                  ..-.|+++|||.+..-.+..        ..++.---..+.+.+
T Consensus       210 ~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~h--------s~iVsTRHYRAPEVi  281 (415)
T KOG0671|consen  210 DLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHH--------STIVSTRHYRAPEVI  281 (415)
T ss_pred             hcceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceeccCc--------ceeeeccccCCchhe
Confidence            9999999999999998531                  12258999999998766543        122221223455677


Q ss_pred             HHcCCCCCCCCHHHHHHHH
Q 004234          514 VQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       514 ~~lG~~~~~~D~~~l~~~i  532 (766)
                      +.+|.-. ..|++++.-.+
T Consensus       282 LgLGwS~-pCDvWSiGCIL  299 (415)
T KOG0671|consen  282 LGLGWSQ-PCDVWSIGCIL  299 (415)
T ss_pred             eccCcCC-ccCceeeeeEE
Confidence            7888854 47998887554

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.19  E-value=1.7e-05  Score=79.50  Aligned_cols=125  Identities=24%  Similarity=0.387  Sum_probs=88.6

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      .-+|.|..+.||.+.+.|.+||+|+||++....                                            ++.
T Consensus        28 ~~L~KG~~s~Vyl~~~~~~~~a~Kvrr~ds~r~--------------------------------------------~l~   63 (201)
T COG2112          28 KELAKGTTSVVYLGEWRGGEVALKVRRRDSPRR--------------------------------------------NLE   63 (201)
T ss_pred             hhhhcccccEEEEeeccCceEEEEEecCCcchh--------------------------------------------hHH
Confidence            458999999999999999999999998765322                                            344


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHA  458 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~GffHa  458 (766)
                      .||+-++..+..      -..|++|.  -++..+.|||++|.+|.+...    +.+++++...+=.+|  -+=..|+-|.
T Consensus        64 kEakiLeil~g~------~~~p~vy~--yg~~~i~me~i~G~~L~~~~~----~~~rk~l~~vlE~a~--~LD~~GI~H~  129 (201)
T COG2112          64 KEAKILEILAGE------GVTPEVYF--YGEDFIRMEYIDGRPLGKLEI----GGDRKHLLRVLEKAY--KLDRLGIEHG  129 (201)
T ss_pred             HHHHHHHHhhhc------CCCceEEE--echhhhhhhhhcCcchhhhhh----cccHHHHHHHHHHHH--HHHHhccchh
Confidence            566666655432      23688883  456677799999999988643    125665544433332  1235799999


Q ss_pred             CCCC--CcEEEeecCCCcEEEEeeccee
Q 004234          459 DPHP--GNIAVDDVNGGRLIFYDFGMMG  484 (766)
Q Consensus       459 DpHP--GNILV~~~~~g~l~LiDFGlv~  484 (766)
                      .+|-  -||++.   ++++.+|||-.+.
T Consensus       130 El~~~~k~vlv~---~~~~~iIDFd~At  154 (201)
T COG2112         130 ELSRPWKNVLVN---DRDVYIIDFDSAT  154 (201)
T ss_pred             hhcCCceeEEec---CCcEEEEEccchh
Confidence            9983  366664   5699999998777

>TIGR02721 ycfN_thiK thiamine kinase

Probab=98.11  E-value=0.00011  Score=77.44  Aligned_cols=138  Identities=20%  Similarity=0.238  Sum_probs=83.8

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      .++..|-..++|+...+|+.+++|+..++....                                          .+|..
T Consensus         2 ~~~~~G~tn~~y~~~~~~~~~vlR~~~~~~~~~------------------------------------------~~~r~   39 (256)
T TIGR02721         2 QTLSGGLTNRSWRIEHPGISFVWRPQSPVCKAL------------------------------------------GVDRQ   39 (256)
T ss_pred             CcCCCcCcCCeEEEEeCCccEEEeeCCcccccc------------------------------------------cCcHH
Confidence            366778888999998888899999764331110                                          12445


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhh--------hh-------h---hhcC--CCHH-H
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRI--------QS-------L---DELG--VDRK-R  437 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~--------~~-------l---~~~g--~d~~-~  437 (766)
                      +|.+++..+.+.     .+ .|+++..  ...+++|||++|.+++..        ..       +   ...+  .+.. .
T Consensus        40 ~E~~~l~~l~~~-----g~-~P~~i~~--~~~~~v~e~i~G~~~~~~~~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~  111 (256)
T TIGR02721        40 REYQILQALSAL-----GL-APKPILV--NEHWLLVEWLEGEVITLDQFVALDLLLELAALLHQLHSQPRFGYPLSLKAR  111 (256)
T ss_pred             HHHHHHHHHHhc-----CC-CCceEEE--eCCEEEEEeccCcccccccccCchhHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence            566666666541     12 5888853  346899999999887631        00       0   0011  1111 1


Q ss_pred             HHHH-----------HHHHHHHHHH--------hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004234          438 LGRY-----------AVESYLEQIL--------SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (766)
Q Consensus       438 la~~-----------lv~~~l~qI~--------~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (766)
                      +...           .+...++.+.        ...+.|+|+|||||++++  ++ +.+|||..++.=++.
T Consensus       112 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H~Dl~~~Nil~~~--~~-~~lIDwE~a~~gdp~  179 (256)
T TIGR02721       112 IAHYWLQIDPARRTPEWLRLYKQFRSAPEPAPLPLAPLHMDVHAYNLVVTP--QG-LKLIDWEYASDGDIA  179 (256)
T ss_pred             HHHHHHhcccccCChHHHHHHHHHHhccCCCCCCCeeecCCCCcCcEEEeC--CC-CEEEeccccCcCCHH
Confidence            1110           0111122222        236899999999999984  44 899999999876653

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PLN02756 S-methyl-5-thioribose kinase

Probab=98.10  E-value=6.4e-05  Score=84.74  Aligned_cols=110  Identities=14%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             hCCCCCChHHHHHHHHHH------hCCChhhhhhccCcccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHH
Q 004234          267 DQVPPFPSETAVSIVEEE------LGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLR  340 (766)
Q Consensus       267 d~vpp~p~~~v~~iie~e------lG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~  340 (766)
                      ....+++.+.+...+.+.      +|..    +.....+++|-|....||+-...+..|+||...|.+...         
T Consensus         4 ~~y~~l~~~~l~~yl~~~~~~~~~l~g~----~~~l~~~eiggGn~N~VyrV~~~~~svVVKqa~p~~r~v---------   70 (418)
T PLN02756          4 SEFRPLDEKSLVEYIKATPALSSKIGND----LDDLKIKEVGDGNLNFVYIVVSSSGSFVIKQALPYIRCI---------   70 (418)
T ss_pred             cccccCCHHHHHHHHHHccchhhhcCCC----CCCceEEEcCCCceeeEEEEEcCCccEEEEeCCccccCC---------
Confidence            344556666666655543      3321    223455789999999999988777789999887776421         


Q ss_pred             HHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCC
Q 004234          341 VIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPG  419 (766)
Q Consensus       341 ~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG  419 (766)
                                +.  ..+.+..   .+           ..|++.+....+.    ..+.||+||.--....+++|||++|
T Consensus        71 ----------ga--~wpl~~~---R~-----------~~Ea~aL~~~~~~----~p~~VPkVy~~ded~~vlvME~L~~  119 (418)
T PLN02756         71 ----------GE--SWPMTKE---RA-----------YFEATALREHGRL----CPDHVPEVYHFDRTMALIGMRYLEP  119 (418)
T ss_pred             ----------Cc--cccCCcc---HH-----------HHHHHHHHHhhhc----CCCCCCeEEEECCCCCEEEEeecCC
Confidence                      00  0000100   00           1234444444332    3478999998666778999999988

>PRK12396 5-methylribose kinase; Reviewed

Probab=98.06  E-value=5.9e-05  Score=84.64  Aligned_cols=114  Identities=16%  Similarity=0.103  Sum_probs=70.2

Q ss_pred             hCCCCCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEeec--CeeEEEEEecCCccchHHHHHHHHHHHHH
Q 004234          267 DQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAE  344 (766)
Q Consensus       267 d~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~--G~~VAVKVqrP~i~~~i~~Dl~il~~la~  344 (766)
                      +...|+..+++...+.+.+|. +..- +....++||-|-..-||++.+.  ++.|+||.-.|-++..             
T Consensus         5 ~~y~~l~~~~v~~yl~~~l~~-~~~~-~~~~~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~-------------   69 (409)
T PRK12396          5 TKYFLMEANDVIVYVKEKLSK-FEHA-KGLQCKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARIS-------------   69 (409)
T ss_pred             ccceeCCHhHHHHHHHHhcCC-CCCc-ccceeeEcCCCceEEEEEEeeCCCCceEEEEeccHhhccC-------------
Confidence            345566777777776665551 1100 2234579999999999999983  6789999765544310             


Q ss_pred             HHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCCh
Q 004234          345 YLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKI  422 (766)
Q Consensus       345 ~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L  422 (766)
                            +   ..+.+..              .-+.|+.-+..+.+...    =.+|++|..-....++|||+++...+
T Consensus        70 ------~---swpL~~~--------------R~~~E~~aL~~~~~~~P----~~VP~vy~~D~e~~~~vMEdL~~~~i  120 (409)
T PRK12396         70 ------D---EFKLSTN--------------RIRIESDVLQLEEELAP----GLVPKVYLFDSVMNCCVMEDLSDHTI  120 (409)
T ss_pred             ------C---CCCCChH--------------HHHHHHHHHHHHHhhCC----CcCCeEEEECcHHhhHHHHhCcccHH
Confidence                  0   0011111              12345555555554332    24999998777778999999976443

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=97.94  E-value=5.5e-05  Score=81.03  Aligned_cols=32  Identities=25%  Similarity=0.241  Sum_probs=27.4

Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceecc
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  486 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L  486 (766)
                      .+++|+|+||+||++++  ++.+.++||+.++.=
T Consensus       175 ~~l~HgD~~~~Nil~~~--~~~~~iIDfe~a~~g  206 (296)
T cd05153         175 RGVIHADLFRDNVLFDG--DELSGVIDFYFACTD  206 (296)
T ss_pred             CcCCccCcCcccEEEeC--CceEEEeehhhhcCc
Confidence            68999999999999984  555689999988864

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=97.88  E-value=5.4e-05  Score=81.93  Aligned_cols=94  Identities=22%  Similarity=0.368  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCC
Q 004234          274 SETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKS  353 (766)
Q Consensus       274 ~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~  353 (766)
                      |..+.+.|.+.+|.+..    --+.+|++.|++.++|+...+++.+.||+.......                       
T Consensus         2 w~~i~~~~~~~~~~~~~----i~~~~~v~GG~i~~a~~~~~~~~~~FvK~~~~~~~~-----------------------   54 (288)
T PF03881_consen    2 WQAIEQQISEQLGADFK----ITSIEPVSGGDINEAYRLDTDGGSYFVKVNSESGRD-----------------------   54 (288)
T ss_dssp             HHHHHHHHHHHHTS---------EEEEE--SSSSEEEEEETTS-EEEEEEEEGGGCC-----------------------
T ss_pred             hHHHHHHHHHHhCCCCc----eeeeEecCCCChhheEEEECCCccEEEEecChhhHH-----------------------
Confidence            56788899999997621    112379999999999999988999999998522111                       


Q ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCC
Q 004234          354 DGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGI  420 (766)
Q Consensus       354 ~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~  420 (766)
                                            -|..|+..++.+++.    ..+.+|+|+.  .+.+..+|+|||++..
T Consensus        55 ----------------------~f~~Ea~gL~~L~~~----~~~~vP~vi~~G~~~~~~fLlle~l~~~   97 (288)
T PF03881_consen   55 ----------------------MFEGEAEGLKALAEA----NPIRVPKVIAWGEYDDDAFLLLEFLEMG   97 (288)
T ss_dssp             ----------------------HHHHHHHHHHHHCHT----TTSBS--EEEEEE-SSCCEEEEE-----
T ss_pred             ----------------------HHHHHHHHHHHHHhc----CCCCCCeEEEEEeecCCceEEEEeecCC
Confidence                                  256678888777542    4578898886  3456679999999987

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PRK06148 hypothetical protein; Provisional

Probab=97.87  E-value=0.0003  Score=88.26  Aligned_cols=55  Identities=18%  Similarity=0.427  Sum_probs=44.1

Q ss_pred             hhhCCCCCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEee-cCeeEEEEEecCC
Q 004234          265 LQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPG  327 (766)
Q Consensus       265 Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~  327 (766)
                      +....|+++.+++.+++++.+|..-       +.+|+++ ..-++|+... +|+.+++|+.+|+
T Consensus         4 ~~~~~p~~s~~~~~~~~~~~ygl~~-------~~~~L~s-~~d~nf~v~~~~g~~yVLKi~~~~   59 (1013)
T PRK06148          4 LSHPAPEFTTKDAEALLAQHFGISA-------TATPLDG-ERDLNFRLTTDDGADYILKIVNPS   59 (1013)
T ss_pred             CCCCCCCCCHHHHHHHHHHHcCCce-------EEeecCC-cCCceEEEEeCCCCeEEEEEcCCc
Confidence            4456799999999999999999642       2357755 5688999988 6889999999876

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=97.83  E-value=2.5e-05  Score=84.64  Aligned_cols=162  Identities=22%  Similarity=0.314  Sum_probs=107.0

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +-||-|.-.-||.+.. +|++.++|+-|-|-.     -+..++.=-.++.+..      ...|.-+         .-+.-
T Consensus        98 nqIGVGKESDIY~v~d~~G~~~~lK~HRLGRt-----SFR~Vk~kRDY~r~r~------~~sWlyL---------SRlaa  157 (465)
T KOG2268|consen   98 NQIGVGKESDIYVVADEEGNPLILKLHRLGRT-----SFRNVKNKRDYLRKRK------SGSWLYL---------SRLAA  157 (465)
T ss_pred             cccccccccceEEEecCCCCchhHHHHhhhhh-----hHHHhhhhhhhHhcCC------ccchhhh---------HHHHH
Confidence            4688899999999999 799999997754421     1111111111111111      1112211         11223


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFH  457 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~GffH  457 (766)
                      .+|-..|..|.+     ..+.||+++.  +++.+.|||+++|.++..+...    .++..+...++.. +.-+-.+|++|
T Consensus       158 ~kEfafmkaL~e-----~gfpVPkpiD--~~RH~Vvmelv~g~Pl~~v~~v----~d~~~ly~~lm~~-Iv~la~~GlIH  225 (465)
T KOG2268|consen  158 TKEFAFMKALYE-----RGFPVPKPID--HNRHCVVMELVDGYPLRQVRHV----EDPPTLYDDLMGL-IVRLANHGLIH  225 (465)
T ss_pred             HHHHHHHHHHHH-----cCCCCCCccc--ccceeeHHHhhcccceeeeeec----CChHHHHHHHHHH-HHHHHHcCcee
Confidence            344555556544     3578999995  6889999999999999886533    2455555555443 34456899999


Q ss_pred             cCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHH
Q 004234          458 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL  494 (766)
Q Consensus       458 aDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l  494 (766)
                      +|-.-=||+|.+  ++++++|||-.+-..+.+..+.|
T Consensus       226 gDFNEFNimv~d--d~~i~vIDFPQmvS~sh~nA~~Y  260 (465)
T KOG2268|consen  226 GDFNEFNIMVKD--DDKIVVIDFPQMVSTSHPNAEYY  260 (465)
T ss_pred             cccchheeEEec--CCCEEEeechHhhccCCCcccee
Confidence            999999999986  88999999998888776654443

>PRK09902 hypothetical protein; Provisional

Probab=97.81  E-value=0.00041  Score=71.77  Aligned_cols=147  Identities=18%  Similarity=0.129  Sum_probs=96.2

Q ss_pred             cCcccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          296 FDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       296 fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      +|+---+.|+.+.|++-.+.|+.+-+|-|.-.+....               ++ |.                    -+-
T Consensus        21 ve~pN~~rgG~SgV~r~~~~g~~~ylKrq~nhl~~s~---------------r~-P~--------------------g~p   64 (216)
T PRK09902         21 VEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSV---------------RY-PF--------------------GRP   64 (216)
T ss_pred             ecCCCcCCCCcceEEEEEeCCcEEEEEeccCcccccc---------------cC-CC--------------------Cch
Confidence            4443456799999999998888999998843332220               00 11                    133


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeecc------CCCeEEEEeecCC-CChhhhhhhhhc---CCCHHHHHHHHHHH
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEY------TTPQILTMEYVPG-IKINRIQSLDEL---GVDRKRLGRYAVES  445 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~------st~~vLVMEyieG-~~L~d~~~l~~~---g~d~~~la~~lv~~  445 (766)
                      -|.+|-+++.++.+     -+|.+|+++-.-      .-+.+||+|-++| .+|.++......   +...++-.-..+..
T Consensus        65 tf~rE~~~L~~L~~-----~GvPVP~pvf~~~~k~~~~~rA~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~  139 (216)
T PRK09902         65 TIVREVAVIKELER-----AGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVAL  139 (216)
T ss_pred             HHHHHHHHHHHHHH-----cCCCCCccceeeeeccCCceEEEEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHH
Confidence            56777888888876     346677776211      1136999999987 466665321111   11122223333455


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCc--EEEEeecceec
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGR--LIFYDFGMMGS  485 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~--l~LiDFGlv~~  485 (766)
                      .+.++|..|+.|+||-|-||+++.  +|+  +.||||--++.
T Consensus       140 ~ia~LH~~Gv~Hgdly~khIll~~--~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        140 AFKKMHSVNRQHGCCYVRHIYVKT--EGKAEAGFLDLEKSRR  179 (216)
T ss_pred             HHHHHHHCCCcCCCCCHhheeecC--CCCeeEEEEEhhccch
Confidence            688999999999999999999975  455  99999976654

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.75  E-value=0.00031  Score=76.14  Aligned_cols=34  Identities=26%  Similarity=0.339  Sum_probs=28.3

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccC
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS  487 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~  487 (766)
                      ..+++|+|+||+||++++  ++...++||+.+..=.
T Consensus       186 ~~~l~HgD~~~~Nvl~~~--~~~~~vIDfd~~~~~~  219 (307)
T TIGR00938       186 PRGVIHADLFPDNVLFDG--DSVKGVIDFYFACTDA  219 (307)
T ss_pred             CCccCCCCCCcCcEEEEC--CceEEEeecccccCcc
Confidence            378999999999999985  5556899999987543

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.74  E-value=0.00035  Score=72.18  Aligned_cols=35  Identities=26%  Similarity=0.362  Sum_probs=29.0

Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (766)
                      .++.|+|+||+||++++ +++.+.+|||-.++.-++
T Consensus       170 ~~l~H~Dl~~~Nil~~~-~~~~~~lIDwe~a~~~~~  204 (235)
T cd05157         170 IVFCHNDLLSGNIIYNE-EKNSVKFIDYEYAGYNYR  204 (235)
T ss_pred             EEEEcCCCCcCcEEEeC-CCCCEEEEEcccCCcCch
Confidence            46999999999999984 246899999998886554

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=97.68  E-value=0.00023  Score=76.86  Aligned_cols=42  Identities=24%  Similarity=0.437  Sum_probs=32.0

Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhh
Q 004234          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNI  490 (766)
Q Consensus       447 l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~  490 (766)
                      ...+|..|++|+|++|.|++++.  +|.+.|.||+.+.......
T Consensus       158 vA~Lh~~GlVHgdi~~~nfll~~--~G~v~Lg~F~~~~r~g~~~  199 (288)
T PF14531_consen  158 VANLHSYGLVHGDIKPENFLLDQ--DGGVFLGDFSSLVRAGTRY  199 (288)
T ss_dssp             HHHHHHTTEEEST-SGGGEEE-T--TS-EEE--GGGEEETTEEE
T ss_pred             HHHHhhcceEecccceeeEEEcC--CCCEEEcChHHHeecCcee
Confidence            55678999999999999999996  8999999999998776543

>PRK06149 hypothetical protein; Provisional

Probab=97.68  E-value=0.00041  Score=86.75  Aligned_cols=58  Identities=16%  Similarity=0.216  Sum_probs=43.2

Q ss_pred             HHhhhhCCCCCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEeecCeeEEEEEecCC
Q 004234          262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPG  327 (766)
Q Consensus       262 L~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~  327 (766)
                      +..+....|.++.+++.+++++.+|..- +      ..++++..- ++|+.+.++..+++|+.+|.
T Consensus         7 ~~~~~~~~p~ls~~~~~~ll~~~ygl~~-~------~~~L~s~~d-~nf~v~t~~~~yVLKi~~~~   64 (972)
T PRK06149          7 IDRSSLPAPDVSEAQAERILAEHYGLSG-T------LTELGSQQD-RNFRVDSDGGRFVLKICHAA   64 (972)
T ss_pred             hccCCCCCCCCCHHHHHHHHHHhcCCce-E------EEecCCcCc-ceEEEEecCCcEEEEeCCcc
Confidence            3446678899999999999999998541 1      246665554 78988875567888998775

>PLN02876 acyl-CoA dehydrogenase

Probab=97.67  E-value=0.00042  Score=85.31  Aligned_cols=107  Identities=15%  Similarity=0.197  Sum_probs=67.2

Q ss_pred             CCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEeec-C---eeEEEEEecCCccchHHHHHHHHHHHHHHH
Q 004234          271 PFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-G---EEVVVKVQRPGLKDLFDIDLKNLRVIAEYL  346 (766)
Q Consensus       271 p~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~-G---~~VAVKVqrP~i~~~i~~Dl~il~~la~~l  346 (766)
                      +++.+.+.+.+.+.++. +..-...+..++++.|....+|+-++. |   ..+++|...|+....               
T Consensus        17 ~~d~~~l~~~l~~~~~~-~~~~~~~~~v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~---------------   80 (822)
T PLN02876         17 RFDEDALLRYAAANVAG-FPVPPSTFKVSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQ---------------   80 (822)
T ss_pred             cCCHHHHHHHHHHhCCC-cCCCccceeEEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCc---------------
Confidence            35666666666665431 111111245578999999999998873 2   478888765442110               


Q ss_pred             hhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC-----CCeEEEEeecCCCC
Q 004234          347 QKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT-----TPQILTMEYVPGIK  421 (766)
Q Consensus       347 ~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s-----t~~vLVMEyieG~~  421 (766)
                                                ..-++.+|++.+..+..    ...+.+|++|....     +..++||||++|..
T Consensus        81 --------------------------~~~~~~rE~~~l~~L~~----~~~vpVP~v~~~~~d~~v~G~~flVME~v~G~~  130 (822)
T PLN02876         81 --------------------------SAHAVEREYQVLRALGE----HTDVPVPKVYCLCTDASVIGTAFYIMEYLEGRI  130 (822)
T ss_pred             --------------------------cHHHHHHHHHHHHHHhh----cCCCCCCcEEEEecCCCcCCCceEEEEecCCcc
Confidence                                      01145567777766642    25588999997433     34689999999986


Q ss_pred             hh
Q 004234          422 IN  423 (766)
Q Consensus       422 L~  423 (766)
                      +.
T Consensus       131 ~~  132 (822)
T PLN02876        131 FV  132 (822)
T ss_pred             cC
Confidence            54

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.50  E-value=0.00053  Score=77.41  Aligned_cols=138  Identities=17%  Similarity=0.210  Sum_probs=76.5

Q ss_pred             Chhhhhh---ccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHH
Q 004234          288 PLDDVFE---RFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (766)
Q Consensus       288 ~~eeiF~---~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~  362 (766)
                      .++++|.   +.-...+|=|-|..||.|.+  ..+.||+||++-.                                   
T Consensus        70 ~IGD~F~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA-----------------------------------  114 (590)
T KOG1290|consen   70 RIGDVFNGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA-----------------------------------  114 (590)
T ss_pred             eccccccCceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh-----------------------------------
Confidence            3556665   33346899999999999999  4789999999521                                   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeecc------CCCeEEEEeecCCCChhhhh-hhhhcCCCH
Q 004234          363 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY------TTPQILTMEYVPGIKINRIQ-SLDELGVDR  435 (766)
Q Consensus       363 i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~------st~~vLVMEyieG~~L~d~~-~l~~~g~d~  435 (766)
                        ..+.++...|+.+....+...     -.+...=.|.+.+..+      ....+||.|++ |..|-.++ .-.-.|+..
T Consensus       115 --qhYtEaAlDEIklL~~v~~~D-----p~~~~~~~VV~LlD~FkhsGpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl  186 (590)
T KOG1290|consen  115 --QHYTEAALDEIKLLQQVREGD-----PNDPGKKCVVQLLDHFKHSGPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPL  186 (590)
T ss_pred             --hHHHHHHHHHHHHHHHHHhcC-----CCCCCCceeeeeeccceecCCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcH
Confidence              112222333333333222111     0001111233333322      23458999987 44444432 222234443


Q ss_pred             H---HHHHHHHHHHHHHHH-hCCccccCCCCCcEEEee
Q 004234          436 K---RLGRYAVESYLEQIL-SHGFFHADPHPGNIAVDD  469 (766)
Q Consensus       436 ~---~la~~lv~~~l~qI~-~~GffHaDpHPGNILV~~  469 (766)
                      .   +|+..++ ..|..+| +.|++|.|+||.|||+..
T Consensus       187 ~~VK~I~~qvL-~GLdYLH~ecgIIHTDlKPENvLl~~  223 (590)
T KOG1290|consen  187 SCVKEICRQVL-TGLDYLHRECGIIHTDLKPENVLLCS  223 (590)
T ss_pred             HHHHHHHHHHH-HHHHHHHHhcCccccCCCcceeeeec
Confidence            3   2332222 3366777 579999999999999974

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=97.48  E-value=0.0013  Score=73.32  Aligned_cols=83  Identities=19%  Similarity=0.136  Sum_probs=51.6

Q ss_pred             ccccceeEEEEEeec-C-eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          301 IAAASLGQVHRARLK-G-EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       301 IgsaSiGQVhrA~l~-G-~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      ||-|-..-||++... | +.|+||.-.|-++..                   +.  ..+.+..              .-.
T Consensus         3 igdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~-------------------g~--~wpl~~~--------------R~~   47 (370)
T TIGR01767         3 VGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVV-------------------GE--SWPLTLD--------------RAR   47 (370)
T ss_pred             CCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhc-------------------CC--CCCCCcc--------------HHH
Confidence            688999999999984 4 689999775544321                   00  0011111              112


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCCh
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKI  422 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L  422 (766)
                      .|+.-+..+.+..   | =.+|++|.--....+++||+++...+
T Consensus        48 ~E~~~L~~~~~~~---P-~~vP~vy~~D~e~~~~vMEdL~~~~i   87 (370)
T TIGR01767        48 IESSALIRQGEHV---P-HLVPRIFHFDTEMAVTVMEDLSHHKI   87 (370)
T ss_pred             HHHHHHHHhhccC---c-cccCeEEEEccccceehHhhCccchH
Confidence            4555555444322   2 26999998777778999999966443

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.31  E-value=0.001  Score=71.57  Aligned_cols=35  Identities=26%  Similarity=0.323  Sum_probs=29.4

Q ss_pred             CCccccCCCCCcEEEeecC---CCcEEEEeecceeccCh
Q 004234          453 HGFFHADPHPGNIAVDDVN---GGRLIFYDFGMMGSISP  488 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~---~g~l~LiDFGlv~~L~~  488 (766)
                      .++.|+|+||+||++++ +   ++.+.+|||..++.-++
T Consensus       179 ~~lcH~Dl~~~Nil~~~-~~~~~~~i~lIDwEya~~~~p  216 (302)
T cd05156         179 VVFCHNDLQEGNILLLN-PSSETKKLVLIDFEYASYNYR  216 (302)
T ss_pred             ceEEecCCCcCeEEecC-CCCCCCcEEEEeeCCCCCCCc
Confidence            46899999999999984 1   27899999999997655

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=97.22  E-value=0.0025  Score=70.40  Aligned_cols=29  Identities=38%  Similarity=0.567  Sum_probs=25.1

Q ss_pred             ccccCCCCCcEEEeecCCC-cEEEEeecceec
Q 004234          455 FFHADPHPGNIAVDDVNGG-RLIFYDFGMMGS  485 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g-~l~LiDFGlv~~  485 (766)
                      ++|+|+||+||++++  +. -..++|||-++.
T Consensus       199 iIH~D~~~~NVl~d~--~~~~~g~iDFdDa~~  228 (331)
T COG2334         199 IIHGDLHPDNVLFDD--DTDVSGFIDFDDAGY  228 (331)
T ss_pred             eeecCCCccceeEcC--CCCeeeEEEcccccc
Confidence            899999999999985  44 388999998875

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=97.21  E-value=0.0096  Score=64.09  Aligned_cols=35  Identities=29%  Similarity=0.464  Sum_probs=28.8

Q ss_pred             CCccccCCCCCcEEEeecCCCc-EEEEeecceeccChh
Q 004234          453 HGFFHADPHPGNIAVDDVNGGR-LIFYDFGMMGSISPN  489 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~-l~LiDFGlv~~L~~~  489 (766)
                      ..++|+|+||+||++++  +++ ..++||++++.=++.
T Consensus       185 ~~lvHGD~~~~Nilv~~--~~~~~gviDWe~a~iGDPa  220 (276)
T cd05152         185 TVLVHGDLHPGHILIDE--DARVTGLIDWTEAKVGDPA  220 (276)
T ss_pred             CeeEeCCCCCCcEEEeC--CCCEEEEECcHhcccCCHH
Confidence            35899999999999984  466 469999999887664

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=97.05  E-value=0.0016  Score=63.58  Aligned_cols=96  Identities=15%  Similarity=0.146  Sum_probs=67.1

Q ss_pred             ChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHH
Q 004234          421 KINRIQSLDELGVDRKRLGRYAVES--YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAF  498 (766)
Q Consensus       421 ~L~d~~~l~~~g~d~~~la~~lv~~--~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~  498 (766)
                      +|.++.......++...+...+.+.  .+..+|.+|      ||+||+++.  ++.+++  ||++...+....       
T Consensus         2 sL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~------kp~Nil~~~--~~~~~~--fG~~~~~~~~~~-------   64 (176)
T smart00750        2 SLADILEVRGRPLNEEEIWAVCLQCLRALRELHRQA------KSGNILLTW--DGLLKL--DGSVAFKTPEQS-------   64 (176)
T ss_pred             cHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcC------CcccEeEcC--ccceee--ccceEeeccccC-------
Confidence            4555443223335555554444332  366777777      999999985  788887  999987765321       


Q ss_pred             HHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          499 YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       499 ~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                          .+++.++++++...+...+..|++++...+.+++.
T Consensus        65 ----~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt   99 (176)
T smart00750       65 ----RVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALD   99 (176)
T ss_pred             ----CCcccccChHHhcCCCCcchhhHHHHHHHHHHHHh
Confidence                35788999999988777888999999988877653

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.02  E-value=0.01  Score=61.01  Aligned_cols=150  Identities=22%  Similarity=0.335  Sum_probs=90.1

Q ss_pred             cccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      ..|||+|+.=-||.-- +....+|||.+|+....-       ...-.++.++.|..             -.+...+|+++
T Consensus         6 ~~~i~~G~~R~cy~HP-~dp~~cIKV~~~~~~~~~-------~~~~~~~k~~~~~~-------------~~~~~~~E~~~   64 (199)
T PF10707_consen    6 SDLIAQGGERDCYQHP-DDPNLCIKVMRPDRGERR-------RPFKRWLKRLRPKS-------------RYRQNRRELRY   64 (199)
T ss_pred             CcccccCCCceEEECC-CCCCeEEEEEcccccccc-------ccchhHHHhhcccc-------------hhHHHHHHHHH
Confidence            3689999876665433 356679999998862110       01112222222210             11223344444


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCC--eEEEEeecCC------CChhhhhhhhhcCCCHHHHHHHHHHHHHHH
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTP--QILTMEYVPG------IKINRIQSLDELGVDRKRLGRYAVESYLEQ  449 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~--~vLVMEyieG------~~L~d~~~l~~~g~d~~~la~~lv~~~l~q  449 (766)
                      ..+      ... -.+.....+|++|..-.|.  .-+|+|.+..      .+|.++.  ...+++.  -...+++.+.+.
T Consensus        65 y~~------l~~-~~~~~~~~i~r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l--~~~~~~~--~~~~~L~~f~~~  133 (199)
T PF10707_consen   65 YKQ------LSL-RRGVDWSHIPRFYGFVETNLGLGLVVELIRDADGNISPTLEDYL--KEGGLTE--ELRQALDEFKRY  133 (199)
T ss_pred             HHH------Hhh-ccCCcccccccEeEEEecCCceEEEEEEEECCCCCcCccHHHHH--HcCCccH--HHHHHHHHHHHH
Confidence            333      332 2345567889888755443  4788887632      2444443  2333444  455667888899


Q ss_pred             HHhCCccccCCCCCcEEEeecCCC--cEEEEe
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGG--RLIFYD  479 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g--~l~LiD  479 (766)
                      +++++++..|++|+||++....++  +++++|
T Consensus       134 l~~~~Iv~~dl~~~NIv~~~~~~~~~~lvlID  165 (199)
T PF10707_consen  134 LLDHHIVIRDLNPHNIVVQRRDSGEFRLVLID  165 (199)
T ss_pred             HHHcCCeecCCCcccEEEEecCCCceEEEEEe
Confidence            999999999999999999864444  599999

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PRK11768 serine/threonine protein kinase; Provisional

Probab=97.00  E-value=0.0096  Score=65.45  Aligned_cols=31  Identities=29%  Similarity=0.228  Sum_probs=26.0

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceecc
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  486 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L  486 (766)
                      ..|++|+|+|||||+++   + .+.++||+.++.=
T Consensus       195 ~~~liHgD~h~~NvL~~---d-~~~iIDFDd~~~g  225 (325)
T PRK11768        195 RLLRLHGDCHPGNILWR---D-GPHFVDLDDARMG  225 (325)
T ss_pred             CccceecCCCchhcccc---C-CcEEEeCCCCCCC
Confidence            35799999999999994   4 4789999999853

>PLN02236 choline kinase

Probab=96.97  E-value=0.01  Score=65.79  Aligned_cols=35  Identities=26%  Similarity=0.421  Sum_probs=29.5

Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (766)
                      ..+.|+|+||+||++++ .++.+.+|||..++.-++
T Consensus       200 ~~~cH~Dl~~~Nil~~~-~~~~~~lID~Eya~~~~~  234 (344)
T PLN02236        200 IGFCHNDLQYGNIMIDE-ETRAITIIDYEYASYNPV  234 (344)
T ss_pred             ceEEeCCCCcCcEEEeC-CCCcEEEEeehhccccch
Confidence            36899999999999974 346899999999987655

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.95  E-value=0.013  Score=61.51  Aligned_cols=96  Identities=22%  Similarity=0.314  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCC
Q 004234          274 SETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKS  353 (766)
Q Consensus       274 ~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~  353 (766)
                      |..+.+.+-+.+|..  ++   -+.+++.-|.+-+.|+-.....++-||+..-                           
T Consensus         2 w~~i~~qlse~~g~~--~i---~er~~v~gG~inea~~v~dg~~~~FvK~n~~---------------------------   49 (286)
T COG3001           2 WQAISQQLSEQLGEG--EI---KEREEVSGGDINEAWRLRDGTDPFFVKCNQR---------------------------   49 (286)
T ss_pred             hHHHHHHHHHHhCch--hh---hcccccCCccccceeEeecCCcceEEEecch---------------------------
Confidence            567778888888865  22   2346788888888887777788999998611                           


Q ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC--CCeEEEEeecCCCChh
Q 004234          354 DGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKIN  423 (766)
Q Consensus       354 ~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s--t~~vLVMEyieG~~L~  423 (766)
                                        ..+--|..||.+++.+++    ...|.||+|+..-+  +..+|||||++-++++
T Consensus        50 ------------------~~~~~f~AEa~gL~~la~----s~ti~VP~vi~~G~~~~~sylVle~L~~~~~d   99 (286)
T COG3001          50 ------------------EQLSMFTAEADGLELLAR----SNTITVPKVIAVGASRDHSYLVLEYLPTGPLD   99 (286)
T ss_pred             ------------------hhHHHHHHHHHHHHHHHh----cCCccccceEEecCCCCeeEEEEeeccCCCCC
Confidence                              012357788888888875    24589999997544  4569999999988777

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=96.89  E-value=0.0038  Score=68.54  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=30.5

Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (766)
                      ..++|+|.|+|||++++  ++.+.++||++++.=+|.
T Consensus       198 ~~lvHGD~~~gNlii~~--~~~~gVlDwe~~~lGDP~  232 (321)
T COG3173         198 PVLVHGDYRPGNLIIDP--GRPTGVLDWELATLGDPL  232 (321)
T ss_pred             ceeeeCCcccCCEEEeC--CCeeEEEeccccccCCcH
Confidence            46899999999999986  666999999999987764

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=96.87  E-value=0.00031  Score=80.01  Aligned_cols=124  Identities=17%  Similarity=0.144  Sum_probs=81.9

Q ss_pred             eEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHh----CCccccCCCCCcEEEeecCCCcEEEEeecceec
Q 004234          410 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS----HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  485 (766)
Q Consensus       410 ~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~----~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~  485 (766)
                      .++.|++|+-.+|.++...+..+..+..   .++....+|+-.    .|.+|+|++|.||+...  +.++++.|||++..
T Consensus       331 lyI~Mn~c~~~tledWl~rr~~~e~~s~---s~~~~~~~q~~~~~~yk~~ihrdlkp~nif~~~--d~q~kIgDFgl~ts  405 (516)
T KOG1033|consen  331 LYIQMNLCEKETLEDWLRRRRTGEERSL---SLMLDIFKQIAPAVEYKGLIHRDLKPSNIFFSD--DDQLKIGDFGLVTS  405 (516)
T ss_pred             hhhhhhhhhhhhHHHHhhCCCcccccch---hHHHHHHHhhccchhhccchhhhcccccccccc--chhhhhhhhhheee
Confidence            5899999999999998754443332221   112222333332    89999999999999986  77999999999998


Q ss_pred             cChhhH--HHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Q 004234          486 ISPNIR--EGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFE  540 (766)
Q Consensus       486 L~~~~r--~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~~~~  540 (766)
                      .+....  ...++...  ..+...||.++-+.---.....|+++|+-.+.+++..|.
T Consensus       406 ~~~~~~~~~~~a~~t~--~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~  460 (516)
T KOG1033|consen  406 QDKDETVAPAAASHTQ--QVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFS  460 (516)
T ss_pred             cccCCcccchhhhhhh--cccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhc
Confidence            866540  01111111  134555666666655455678899999988877776553

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=96.71  E-value=0.0016  Score=75.67  Aligned_cols=124  Identities=14%  Similarity=0.132  Sum_probs=85.3

Q ss_pred             CCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhCCccccCCCCCcEEEeecC
Q 004234          394 MDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSHGFFHADPHPGNIAVDDVN  471 (766)
Q Consensus       394 ~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~--~l~qI~~~GffHaDpHPGNILV~~~~  471 (766)
                      .+.+.-+..--+-.++.+++++|+.|+.+-...... ...+........++.  .+.+.|..|++|+|+||.||+++.  
T Consensus        56 ~~f~v~lhyafqt~~kl~l~ld~~rgg~lft~l~~~-~~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~--  132 (612)
T KOG0603|consen   56 TPFLVKLHYAFQTDGKLYLILDFLRGGDLFTRLSKE-VMFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLL--  132 (612)
T ss_pred             CCceeeeeeeeccccchhHhhhhcccchhhhccccC-CchHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecc--
Confidence            445555555556678889999999998665422111 112222333333333  367788999999999999999986  


Q ss_pred             CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          472 GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       472 ~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      +|.+++.|||..+..-+....          .+++.+++++... | .....|-..+...+
T Consensus       133 ~Ghi~~tdfglske~v~~~~~----------cgt~eymApEI~~-g-h~~a~D~ws~gvl~  181 (612)
T KOG0603|consen  133 EGHIKLTDFGLSKEAVKEKIA----------CGTYEYRAPEIIN-G-HLSAADWWSFGVLA  181 (612)
T ss_pred             cCccccCCchhhhHhHhhhhc----------ccchhhhhhHhhh-c-cCCcccchhhhhhH
Confidence            899999999998876554432          6799999999998 3 34456766655433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=96.51  E-value=0.00062  Score=83.02  Aligned_cols=46  Identities=24%  Similarity=0.255  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004234          436 KRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (766)
Q Consensus       436 ~~la~~lv~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (766)
                      +.++-.++ ..+.|+|..|+.|+|+|.+||||+.  =+=+.|.||..-+
T Consensus       123 kWiaFQLL-~al~qcH~~gVcHGDIKsENILiTS--WNW~~LtDFAsFK  168 (1431)
T KOG1240|consen  123 KWIAFQLL-KALSQCHKLGVCHGDIKSENILITS--WNWLYLTDFASFK  168 (1431)
T ss_pred             HHHHHHHH-HHHHHHHHcCccccccccceEEEee--echhhhhcccccC
Confidence            44444433 3479999999999999999999985  5567888887654

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=96.43  E-value=0.024  Score=62.57  Aligned_cols=34  Identities=29%  Similarity=0.513  Sum_probs=29.0

Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (766)
                      +-|.|++|+||++.+ .++++.+|||..++.-++-
T Consensus       184 ~CHnDl~~~NiL~~~-~~~~l~lID~EYag~nd~~  217 (330)
T PLN02421        184 FAHNDLLSGNLMLNE-DEGKLYFIDFEYGSYSYRG  217 (330)
T ss_pred             EEECCCCcccEEEeC-CCCcEEEEcccccCCCccH
Confidence            789999999999974 3578999999999976653

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=96.34  E-value=0.004  Score=74.09  Aligned_cols=71  Identities=23%  Similarity=0.236  Sum_probs=48.3

Q ss_pred             EeecCCCChhhhhhhh-hcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccC
Q 004234          414 MEYVPGIKINRIQSLD-ELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS  487 (766)
Q Consensus       414 MEyieG~~L~d~~~l~-~~g~d~~~la~~lv~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~  487 (766)
                      ||||++ .|..+.... ..........-..+...++.+|..|+-|+|+||.|+++..  +|.++++|||......
T Consensus       400 mE~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~--~g~lki~Dfg~~~vf~  471 (601)
T KOG0590|consen  400 MEYCPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTE--NGILKIIDFGAASVFR  471 (601)
T ss_pred             hhcccH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEec--CCceEEeecCcceeec
Confidence            999999 777754321 1111111111111222356788999999999999999996  8899999999887553

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=96.12  E-value=0.0086  Score=66.54  Aligned_cols=75  Identities=17%  Similarity=0.187  Sum_probs=45.7

Q ss_pred             CeEEEEeecCCCChhhhhhhhhcCCC-HHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeecCCC--cEEEEeecceec
Q 004234          409 PQILTMEYVPGIKINRIQSLDELGVD-RKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGG--RLIFYDFGMMGS  485 (766)
Q Consensus       409 ~~vLVMEyieG~~L~d~~~l~~~g~d-~~~la~~lv~~~l~qI~~~GffHaDpHPGNILV~~~~~g--~l~LiDFGlv~~  485 (766)
                      ..+|||-..+ .+|..+......... ..-+...+++ ...++++||+-|+|+|..||++.-.+|+  .+++.|||++--
T Consensus       317 tlylvMkrY~-~tLr~yl~~~~~s~r~~~~~laQlLE-av~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLA  394 (598)
T KOG4158|consen  317 TLYLVMKRYR-QTLREYLWTRHRSYRTGRVILAQLLE-AVTHLHKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLA  394 (598)
T ss_pred             eEEEehhcch-hhHHHHHhcCCCchHHHHHHHHHHHH-HHHHHHHccchhhcccccceEEEecCCCCcEEEEcccceeee
Confidence            3488887654 344444322111111 1111222222 2567889999999999999999743343  699999998853

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=95.36  E-value=0.011  Score=72.56  Aligned_cols=91  Identities=21%  Similarity=0.198  Sum_probs=64.6

Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccC----hhhHHHHHHHHH-----HHhhcCHHHHHHHHHHc
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS----PNIREGLLEAFY-----GIYEKDADKVLQAMVQM  516 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~----~~~r~~l~~l~~-----a~~~~D~~~v~~~l~~l  516 (766)
                      .++.+|..|++|+|++|.|++|+.  -|++++.|||+....-    ....+.+++-+.     .-+.+.+++++++++.+
T Consensus       155 a~Eylh~ygivhrdlkpdnllIT~--mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilr  232 (1205)
T KOG0606|consen  155 AVEYLHSYGIVHRDLKPDNLLITS--MGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILR  232 (1205)
T ss_pred             HhHhhccCCeecCCCCCCcceeee--cccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhhh
Confidence            467889999999999999999996  8999999999876432    222222222111     11346788888888877


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHH
Q 004234          517 GVLVPTGDTTAVRRTAQFFLNS  538 (766)
Q Consensus       517 G~~~~~~D~~~l~~~i~~~l~~  538 (766)
                      --.....|-+++.-..++|+-.
T Consensus       233 qgygkpvdwwamGiIlyeFLVg  254 (1205)
T KOG0606|consen  233 QGYGKPVDWWAMGIILYEFLVG  254 (1205)
T ss_pred             hccCCCccHHHHHHHHHHHhee
Confidence            5556678888888877777643

>PF04655 APH_6_hur: Aminoglycoside/hydroxyurea antibiotic resistance kinase; InterPro: IPR006748 The aminoglycosides are a large group of biologically active bacterial secondary metabolites, best known for their antibiotic properties []

Probab=95.33  E-value=0.037  Score=59.04  Aligned_cols=30  Identities=30%  Similarity=0.324  Sum_probs=26.4

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCc
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGL  328 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i  328 (766)
                      .++..|+.+.|+.++. +|+++++|+..|.-
T Consensus         8 ~~~~~g~~s~V~pv~~~dG~~avLKl~~p~~   38 (253)
T PF04655_consen    8 GPPAHGSSSLVVPVRRADGTPAVLKLAPPHA   38 (253)
T ss_pred             CCCCCCcceEEEEEEcCCCCeEEEEecCCcc
Confidence            4678899999999998 89999999997754

Aminoglycoside phosphotransferases achieve inactivation of these enzymes by phosphorylation, utilising ATP. Likewise, hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0006468 protein phosphorylation, 0019748 secondary metabolic process

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=95.00  E-value=0.19  Score=51.90  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=23.6

Q ss_pred             ccccccce-eEEEEEeecCeeEEEEE
Q 004234          299 EPIAAASL-GQVHRARLKGEEVVVKV  323 (766)
Q Consensus       299 ~PIgsaSi-GQVhrA~l~G~~VAVKV  323 (766)
                      +-+|.|+- |.|+++..+|+.+|+|+
T Consensus        43 efLg~g~~~~~V~kv~I~g~~YALKl   68 (207)
T PF13095_consen   43 EFLGHGSHDGYVFKVEIDGRIYALKL   68 (207)
T ss_pred             eecCCCCceeEEEEEEECCeEEEEEE
Confidence            56899999 99999999999999999

>KOG2269 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=94.97  E-value=0.13  Score=56.39  Aligned_cols=193  Identities=18%  Similarity=0.196  Sum_probs=108.4

Q ss_pred             hhhccCcccccccceeEEEEEee----cC--------eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 004234          292 VFERFDVEPIAAASLGQVHRARL----KG--------EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRD  359 (766)
Q Consensus       292 iF~~fd~~PIgsaSiGQVhrA~l----~G--------~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d  359 (766)
                      +|+.++- .|+.|.-+.|..|.-    +|        +++||||-+.-+.+--.+|-.| +.=.++=.+      ..+.+
T Consensus       252 vle~i~G-iIsTGKEsvvlHAY~GS~E~~~qd~ql~ptecAIKvfKTTLnEFKnRd~Yi-KDDfRFKDR------FSK~N  323 (531)
T KOG2269|consen  252 VLESIDG-IISTGKESVVLHAYAGSNEHGHQDPQLSPTECAIKVFKTTLNEFKNRDEYI-KDDFRFKDR------FSKQN  323 (531)
T ss_pred             hHHhhhh-hhhcCcceEEEEeccCcccccccCcccCchHHHHHHHHHHHHHHhhhhhhh-ccchhhhhh------hcccC
Confidence            3444442 577788888877743    22        3567777543333222222111 000001111      11234


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCC--HHH
Q 004234          360 WVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVD--RKR  437 (766)
Q Consensus       360 ~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d--~~~  437 (766)
                      +..|+.-++         ..|..|+.++++     .++.+|.|+.  -.+.||||.|+.--.+.. -.++...+.  ..+
T Consensus       324 pR~i~~mWA---------EkEmhNL~RMq~-----~GlpcP~vV~--lkkhvLVMsFiGd~~~aA-PkLK~v~l~d~E~~  386 (531)
T KOG2269|consen  324 PRGILKMWA---------EKEMHNLSRMQK-----HGLPCPQVVK--LKKHVLVMSFIGDQGLAA-PKLKNVELTDDERR  386 (531)
T ss_pred             cHHHHHHHH---------HHHHHHHHHHHh-----cCCCCCceee--eecceEEEEeecCCCCCC-ccccccccChHHHH
Confidence            555554443         356789998876     3577888773  567899999985432221 011111111  222


Q ss_pred             HHHHHHHHHH-HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004234          438 LGRYAVESYL-EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (766)
Q Consensus       438 la~~lv~~~l-~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l  516 (766)
                      .+..-+...+ +..++.-.+|+|+.--|+|..   .|++.+||-..+...+...  .+     -++.+|...+..-+...
T Consensus       387 ~aY~q~~~~M~~lY~Ec~LVHADlSEyN~Lw~---~gKvw~IDVsQsvep~HP~--~L-----eFL~RDc~Ni~~FF~r~  456 (531)
T KOG2269|consen  387 NAYDQVQSIMCRLYKECLLVHADLSEYNLLWT---PGKVWVIDVSQSVEPSHPR--SL-----EFLTRDCQNIITFFTRI  456 (531)
T ss_pred             HHHHHHHHHHHHHHHhhheeecchhhhhheec---CCceEEEechhccCCCCcc--hh-----HHHHHHHHHHHHHHHhc
Confidence            2333333333 444578899999999999997   5799999977665554332  22     22356788888888888


Q ss_pred             CCC
Q 004234          517 GVL  519 (766)
Q Consensus       517 G~~  519 (766)
                      |..
T Consensus       457 G~p  459 (531)
T KOG2269|consen  457 GTP  459 (531)
T ss_pred             CCC
Confidence            864

>PRK10271 thiK thiamine kinase; Provisional

Probab=94.79  E-value=0.022  Score=58.00  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=28.4

Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (766)
                      .-..|+|+||+||++++  +| +++|||+.++.-++.
T Consensus        77 ~~p~H~D~~~~N~~~~~--~~-~~lIDwe~a~~gDp~  110 (188)
T PRK10271         77 LAPLHMDVHAGNLVHSA--SG-LRLIDWEYAGDGDIA  110 (188)
T ss_pred             eeeecCCCCCccEEEEC--CC-EEEEeCCcccCCCHH
Confidence            34689999999999974  44 999999999987764

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=93.59  E-value=0.41  Score=53.64  Aligned_cols=124  Identities=13%  Similarity=0.069  Sum_probs=79.8

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhc-------CCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEE
Q 004234          407 TTPQILTMEYVPGIKINRIQSLDEL-------GVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIF  477 (766)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~-------g~d~~~la~~l--v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~L  477 (766)
                      .......+-+..-+.|..+....+.       .+...++....  +...+.++|.+|++|-|+-..|..|++  .-+++|
T Consensus       360 ~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd--~LqVkl  437 (563)
T KOG1024|consen  360 YATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDD--QLQVKL  437 (563)
T ss_pred             cCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehh--heeEEe
Confidence            3344455566665666665442221       11222333332  345578899999999999999999986  678999


Q ss_pred             EeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          478 YDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       478 iDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      .|=.+.+.+=|.+-..+.+-    -++-...|..+.+.....+...|.++|...+-+++
T Consensus       438 tDsaLSRDLFP~DYhcLGDn----EnRPvkWMslEal~n~~yssasDvWsfGVllWELm  492 (563)
T KOG1024|consen  438 TDSALSRDLFPGDYHCLGDN----ENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELM  492 (563)
T ss_pred             ccchhccccCcccccccCCC----CCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHH
Confidence            99999998866655433211    12345566666666666677889999987665443

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=93.10  E-value=0.23  Score=55.50  Aligned_cols=81  Identities=20%  Similarity=0.190  Sum_probs=47.5

Q ss_pred             Cccccceeee-ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHH--HHHHH--hCCccccCCCCCcEEEee
Q 004234          395 DYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESY--LEQIL--SHGFFHADPHPGNIAVDD  469 (766)
Q Consensus       395 ~~V~vP~v~~-e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~--l~qI~--~~GffHaDpHPGNILV~~  469 (766)
                      +..--|.++. .-+--.|++|++ .|.+|..+...     +.+++.. .+..+  +-.+.  ..-|=|+|+|-+||+++ 
T Consensus       285 ~~~e~~~vv~~de~~y~yl~~kd-hgt~is~ik~~-----~~~e~ls-ff~s~~sil~~lekkf~fehrnlt~~niLId-  356 (488)
T COG5072         285 VFLETLKVVSLDETLYLYLHFKD-HGTPISIIKAD-----RSEEELS-FFWSCISILDILEKKFPFEHRNLTLDNILID-  356 (488)
T ss_pred             hhhhcceEEecCCceEEEEEEec-CCceeeeeecc-----cHHHHHH-HHHHHHHHHhhhhhcCCcccccccccceeee-
Confidence            3445566665 222234677776 36666543211     1122211 12222  12222  35688999999999997 


Q ss_pred             cCCCcEEEEeecceec
Q 004234          470 VNGGRLIFYDFGMMGS  485 (766)
Q Consensus       470 ~~~g~l~LiDFGlv~~  485 (766)
                        +|+|.||||-+++.
T Consensus       357 --~GnvtLIDfklsRl  370 (488)
T COG5072         357 --EGNVTLIDFKLSRL  370 (488)
T ss_pred             --cCceEEEEeeeeec
Confidence              79999999999984

>COG4857 Predicted kinase [General function prediction only]

Probab=92.92  E-value=0.4  Score=51.72  Aligned_cols=49  Identities=20%  Similarity=0.421  Sum_probs=35.4

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEe--ecceeccChhhHHHHHHHHHHHhh
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYD--FGMMGSISPNIREGLLEAFYGIYE  503 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiD--FGlv~~L~~~~r~~l~~l~~a~~~  503 (766)
                      ..-.+|+|+|.|.|++++   ...++||  |...|.+.-+.-.-++.++.....
T Consensus       227 aetLiHGDLHsGSIfvte---~etkvIDPEFaFYGPmafDiG~~iaNl~~~~~s  277 (408)
T COG4857         227 AETLIHGDLHSGSIFVTE---KETKVIDPEFAFYGPMAFDIGMLIANLWMSLFS  277 (408)
T ss_pred             hHHHhccccccCcEEeec---CcceeeCccccccCcchhhHHHHHHHHHHHHHh
Confidence            456899999999999984   4567777  777777766655556666665443

>PTZ00384 choline kinase; Provisional

Probab=92.48  E-value=1.7  Score=49.27  Aligned_cols=32  Identities=28%  Similarity=0.217  Sum_probs=26.5

Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccC
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS  487 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~  487 (766)
                      ..+-|-|+++|||+..   ++.+.+|||=.++.=+
T Consensus       227 ~VfCHNDL~~gNIL~~---~~~l~lID~EYA~~n~  258 (383)
T PTZ00384        227 VLFCHNDLFFTNILDF---NQGIYFIDFDFAGFNY  258 (383)
T ss_pred             eeeeeccCCcccEEec---CCCEEEEEeccccCCc
Confidence            5789999999999975   5679999998777543

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=92.15  E-value=0.39  Score=48.89  Aligned_cols=86  Identities=21%  Similarity=0.268  Sum_probs=54.4

Q ss_pred             ccceeeeccCCCeEEEEeecCCCChhhh----hhhhhc-CCCHHHHHHHHHHHHHHHHHh---CCccccCCCCCcEEEee
Q 004234          398 KVPTIFWEYTTPQILTMEYVPGIKINRI----QSLDEL-GVDRKRLGRYAVESYLEQILS---HGFFHADPHPGNIAVDD  469 (766)
Q Consensus       398 ~vP~v~~e~st~~vLVMEyieG~~L~d~----~~l~~~-g~d~~~la~~lv~~~l~qI~~---~GffHaDpHPGNILV~~  469 (766)
                      .+|+++. .|+ +++++||+..+++...    ...... -..+.++|..+++.. +.+..   ..|.-+|.+|+|+-+++
T Consensus        21 ~~pk~lG-~CG-~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l-~~l~~~~~~~~~lcDv~~~nfgv~~   97 (188)
T PF12260_consen   21 PFPKLLG-SCG-RFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELL-EELDHGPLGFFYLCDVSPDNFGVND   97 (188)
T ss_pred             CCCCeee-ECC-CEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHH-HHHhcCCCCcEEEeecchHHeEEeC
Confidence            7899985 344 5779999997755321    111111 112334444444432 22222   34778999999999986


Q ss_pred             cCCCcEEEEeecceeccCh
Q 004234          470 VNGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       470 ~~~g~l~LiDFGlv~~L~~  488 (766)
                        +|+++++|...+...+.
T Consensus        98 --~~~lk~iDld~v~~~~~  114 (188)
T PF12260_consen   98 --DGRLKLIDLDDVFVEDK  114 (188)
T ss_pred             --CCcEEEEechhcchhHH
Confidence              88999999988876644

Proteins in this uncharacterised family are described as transmembrane proteins.

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=91.71  E-value=0.12  Score=55.68  Aligned_cols=31  Identities=26%  Similarity=0.343  Sum_probs=26.5

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceec
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  485 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~  485 (766)
                      ..|++|+|+|++||+++   ++.+.++||+.+..
T Consensus       186 ~~~liHgD~~~~Nil~~---~~~i~lIDfd~~~~  216 (313)
T TIGR02906       186 IRGFCHQDYAYHNILLK---DNEVYVIDFDYCTI  216 (313)
T ss_pred             cCceEcCCCCcccEEEe---CCcEEEEECccccc
Confidence            46899999999999997   36789999997664

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PTZ00296 choline kinase; Provisional

Probab=91.64  E-value=2.2  Score=49.28  Aligned_cols=32  Identities=28%  Similarity=0.241  Sum_probs=26.5

Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (766)
                      .+-|.|+.++||+..   ++.+.||||=.++.=++
T Consensus       285 VfCHNDl~~~NiL~~---~~~l~LIDfEYAg~ndp  316 (442)
T PTZ00296        285 VFCHNDLQENNIINT---NKCLRLIDFEYSGYNFL  316 (442)
T ss_pred             eEEeCCCCccceeec---CCCEEEEeecccccccH
Confidence            578999999999875   45599999988886544

>PF07914 DUF1679: Protein of unknown function (DUF1679); InterPro: IPR012877 This region is found in a number of Caenorhabditis elegans and Caenorhabditis briggsae proteins, in one case (Q19034 from SWISSPROT) as a repeat

Probab=91.21  E-value=3.8  Score=46.95  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=25.8

Q ss_pred             ccccCCCCCcEEEeecCCCc---EEEEeecceeccCh
Q 004234          455 FFHADPHPGNIAVDDVNGGR---LIFYDFGMMGSISP  488 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~---l~LiDFGlv~~L~~  488 (766)
                      ++|+|+...|||.+..++|+   -.||||=++..-++
T Consensus       270 L~HGDLw~~NiLw~k~~~g~~~l~AIIDwQ~vh~G~~  306 (414)
T PF07914_consen  270 LVHGDLWSSNILWDKDSDGKLKLKAIIDWQCVHRGSP  306 (414)
T ss_pred             eecCCccHHheeeecCCchhHHHHHHHHHHHhhcCch
Confidence            68999999999998644543   45888877766554

In many of the family members, this region is associated with the CHK region described by SMART as being found in zinc finger-C4 and HLH domain-containing kinases. In fact, one member of this family (Q9GUC1 from SWISSPROT) is annotated as being a member of the nuclear hormone receptor family, and contains regions typical of such proteins (IPR000536 from INTERPRO, IPR008946 from INTERPRO, and IPR001628 from INTERPRO).

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=90.20  E-value=0.22  Score=50.76  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=30.5

Q ss_pred             hCCccccCCCCCcEEEeecCCC---cEEEEeecceeccChh
Q 004234          452 SHGFFHADPHPGNIAVDDVNGG---RLIFYDFGMMGSISPN  489 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g---~l~LiDFGlv~~L~~~  489 (766)
                      ...+.|+|+|++||++...++|   .+.++||..++.-++.
T Consensus       119 ~~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~g~p~  159 (196)
T smart00587      119 FNVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYGSPA  159 (196)
T ss_pred             ceEEeeCCCCccceeeccCCCCCccceEEEecccCCcCChH
Confidence            3578999999999999752233   6999999999987764

subfamily of choline kinases

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=89.03  E-value=0.064  Score=64.01  Aligned_cols=119  Identities=22%  Similarity=0.253  Sum_probs=71.2

Q ss_pred             cCCCeEEEEeecCCCChhhhh-hhhhcCCCHHHHHHHHHH--HHHHHHH-hCCccccCCCCCcEEEeecCCC-cEEEEee
Q 004234          406 YTTPQILTMEYVPGIKINRIQ-SLDELGVDRKRLGRYAVE--SYLEQIL-SHGFFHADPHPGNIAVDDVNGG-RLIFYDF  480 (766)
Q Consensus       406 ~st~~vLVMEyieG~~L~d~~-~l~~~g~d~~~la~~lv~--~~l~qI~-~~GffHaDpHPGNILV~~~~~g-~l~LiDF  480 (766)
                      .....++.+||.+|..+.+.. .-+..+.+........-+  .-+..+| ..|+.|+|++|.|.+++.  .+ .++..||
T Consensus        92 ~~~~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~--s~~~l~~~df  169 (601)
T KOG0590|consen   92 SPRSYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDE--SGSALKIADF  169 (601)
T ss_pred             CCcccccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhcc--CCCcccCCCc
Confidence            456679999999999887754 222112222111111111  2244456 779999999999999986  66 8999999


Q ss_pred             cceeccCh-hhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHH
Q 004234          481 GMMGSISP-NIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVR  529 (766)
Q Consensus       481 Glv~~L~~-~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~  529 (766)
                      |++..+.. .........-.+   .++.+++++...- +...+..|.+...
T Consensus       170 ~~At~~~~~~g~~~~~~~~~g---~s~~y~a~E~~~~~~~~~~~~d~~S~g  217 (601)
T KOG0590|consen  170 GLATAYRNKNGAERSLKDRCG---SSPPYGAPEHLSGKAYRGPSVDVWSLG  217 (601)
T ss_pred             hhhccccccCCcceeeecccC---CCCCCCCcccccchhhcCCCccccccc
Confidence            99998876 333222221111   2666666665543 3334445554433

>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function

Probab=88.27  E-value=0.75  Score=49.30  Aligned_cols=35  Identities=26%  Similarity=0.349  Sum_probs=29.3

Q ss_pred             CccccCCCCCcEEEeecCCC---cEEEEeecceeccCh
Q 004234          454 GFFHADPHPGNIAVDDVNGG---RLIFYDFGMMGSISP  488 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g---~l~LiDFGlv~~L~~  488 (766)
                      -+.|+|+|++|||+...++|   .++++||-+++.-++
T Consensus       216 vl~HGD~w~nNilf~~~~~g~~~~~~liDfQ~~~~g~p  253 (294)
T PF02958_consen  216 VLCHGDFWTNNILFKYDDDGKPIDVVLIDFQLARYGSP  253 (294)
T ss_pred             EEEcCccCHHhEeEccccccccccceeeccccccCCCc
Confidence            47999999999999863344   799999999987766

All known members of this group are proteins from drosophila and Caenorhabditis elegans.

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=87.98  E-value=0.24  Score=50.66  Aligned_cols=35  Identities=31%  Similarity=0.562  Sum_probs=23.1

Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (766)
                      ..+-|.|++||||++.. .++++.||||-.++.-++
T Consensus       143 ~v~cHnDl~~~Nil~~~-~~~~~~lIDfEya~~n~~  177 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINN-KDGEVKLIDFEYAGYNDR  177 (211)
T ss_dssp             EEEE-S--SGGGEEETS-SSSCEEE--GTT-EEEEH
T ss_pred             ceEeeccCccccEEecc-CCCeEEEecHHHHhhccc
Confidence            46889999999999932 378999999999887544

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=84.51  E-value=0.71  Score=49.67  Aligned_cols=33  Identities=33%  Similarity=0.553  Sum_probs=28.6

Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (766)
                      -+.|+|++|+|++.++  .|++.||||=-++.=++
T Consensus       154 v~cH~Dl~~~N~l~t~--~~~l~LIDWEyAg~~D~  186 (269)
T COG0510         154 VPCHNDLNPGNLLLTD--KGGLFLIDWEYAGLNDP  186 (269)
T ss_pred             eeecCCCCccceEEcC--CCcEEEEecccCCCccH
Confidence            5899999999999984  69999999988886554

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=83.22  E-value=0.62  Score=50.63  Aligned_cols=33  Identities=12%  Similarity=0.097  Sum_probs=28.4

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceecc
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  486 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L  486 (766)
                      ..|++|+|++++|+++++  ++.+.++||-.+..=
T Consensus       195 ~~~lcHgD~~~~Nvl~~~--~~~~~iIDfd~~~~d  227 (309)
T TIGR02904       195 RTVLVHGKLSLSHFLYDE--TRGGYFINFEKASFA  227 (309)
T ss_pred             ceeeeCCCCcHHhEEEcC--CCCEEEEEhhhcccC
Confidence            458999999999999975  778999999988753

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=82.99  E-value=3  Score=48.62  Aligned_cols=124  Identities=17%  Similarity=0.115  Sum_probs=76.8

Q ss_pred             CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhC-CccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004234          408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSH-GFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (766)
Q Consensus       408 t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~--~l~qI~~~-GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (766)
                      ...+.+.+||.-++|.|+......+.|.......+-+.  -+..+|.- ..+|+-+++.|.+++.  .-.+++.|||+-.
T Consensus        20 ~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nClvd~--~w~lklt~~Gl~~   97 (484)
T KOG1023|consen   20 PEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSNCLVDS--RWVLKLTDFGLNS   97 (484)
T ss_pred             CceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeeccccceeee--eEEEEechhhhcc
Confidence            45678899999999999876655566654433333222  35556643 3499999999999986  7789999999998


Q ss_pred             ccChhh-HHHHHHHHHHHhhcCHHHHHHHHHHcC-------CCCCCCCHHHHHHHHHHHHHH
Q 004234          485 SISPNI-REGLLEAFYGIYEKDADKVLQAMVQMG-------VLVPTGDTTAVRRTAQFFLNS  538 (766)
Q Consensus       485 ~L~~~~-r~~l~~l~~a~~~~D~~~v~~~l~~lG-------~~~~~~D~~~l~~~i~~~l~~  538 (766)
                      ...+.. .......     ..+.=..+++++...       ..+..+|.+++.-.+++++.+
T Consensus        98 ~~~~~~~~~~~~~~-----~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r  154 (484)
T KOG1023|consen   98 LLEETAEPEAHHPI-----RKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFR  154 (484)
T ss_pred             cccccccccccchh-----HHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhc
Confidence            874300 0000000     011111223333321       145668999999877776643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	766
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	1e-06
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.0 bits (178), Expect = 3e-13
 Identities = 92/626 (14%), Positives = 183/626 (29%), Gaps = 188/626 (30%)

Query: 30  LSKQ-SLYRSF----LYKNYPRCNLGRRIRVAA-GKQDGSVVVEEKREPEFIKGLNDFEV 83
           LSKQ  + + F    L  NY    L   I+         + +  E+R+  +    ND +V
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLY----NDNQV 125

Query: 84  NGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGG---VAVEVVGQVEEEEKLNKEI 140
               + SR      +   +        V  ++G    G   VA++V    + + K++ +I
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 141 ERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRA 200
                          F                 W   K  ++ +  LE+   +   +++ 
Sbjct: 185 ---------------F-----------------WLNLKNCNSPETVLEM---LQKLLYQI 209

Query: 201 WLN-----NQKFSYRGGMTEEKKVLRRKALAKWLKESILRL----GPTFIK---IGQQ-- 246
             N     +   + +  +   +  LRR   +K  +  +L L             +  +  
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 247 FSTR----VDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDV-FERFDVEPI 301
            +TR     D L+      +S L         +   S++ + L     D+  E     P 
Sbjct: 270 LTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 302 AAASLG---QVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKR 358
             + +    +   A     +    V    L  + +  L  L          +P       
Sbjct: 329 RLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVL----------EPA------ 369

Query: 359 DWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPT----IFW---EYTTPQI 411
           ++  ++D  +                 +F  +        +PT    + W     +   +
Sbjct: 370 EYRKMFDRLS-----------------VFPPS------AHIPTILLSLIWFDVIKSDVMV 406

Query: 412 LTME----------------YVPGIKIN-RIQSLDELGVDRKRLGRYAVESYLEQ----- 449
           +  +                 +P I +  +++  +E  + R  +  Y +    +      
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 450 ------ILSHGFFH---ADPHPGNIAVDDVNGGRLIFYDFGMMG------SISPNIREGL 494
                   SH   H    +        + +   R++F DF  +       S + N    +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHP------ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 495 LEA-----FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKE 549
           L       FY  Y  D D   + +V                    FL   EE L    K 
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLV---------------NAILDFLPKIEENL-ICSKY 564

Query: 550 REITTQELGFKKPLSKEEKIEKKKQR 575
            ++    L  +     EE   K+ QR
Sbjct: 565 TDLLRIALMAEDEAIFEEA-HKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 4e-12
 Identities = 65/467 (13%), Positives = 122/467 (26%), Gaps = 174/467 (37%)

Query: 253 ILAQEYVDELSELQDQVPP----F------PSETAVSIVEEELGAPLDDVFERFDVEPIA 302
           IL++E +D +   +D V      F        E     VEE L      +      E   
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 303 AASLGQVH---RARLKGE-EVVVK--VQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGA 356
            + + +++   R RL  + +V  K  V R             LR   + L ++ P     
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-------YLKLR---QALLELRPA---- 150

Query: 357 KRDWVAIY--DECA-SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILT 413
               V I        + +        +   +                 IFW       L 
Sbjct: 151 --KNVLIDGVLGSGKTWV------ALDVCLSYKVQCKMDF-------KIFW-------LN 188

Query: 414 MEYV--PGIKINRIQSL-------DELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGN 464
           ++    P   +  +Q L            D     +  + S ++  L      + P+   
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRR-LLKSKPYENC 246

Query: 465 IAV-DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG 523
           + V  +V                +         AF        +      +   +L+ T 
Sbjct: 247 LLVLLNVQ---------------NAKA----WNAF--------N------LSCKILLTTR 273

Query: 524 DTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDL 583
                      FL+      AA      +    +      + +E             + L
Sbjct: 274 FKQVTD-----FLS------AATTTHISLDHHSMTL----TPDE------------VKSL 306

Query: 584 LAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAK--PYAMELLKFREAGVE 641
           L                       LD   + L PR    E+    P  + ++        
Sbjct: 307 LL--------------------KYLDCRPQDL-PR----EVLTTNPRRLSIIAES----- 336

Query: 642 VILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQR----LEQGDLK 684
             ++D    WD         ++  +  +KL   I+     LE  + +
Sbjct: 337 --IRDGLATWDN--------WKHVN-CDKLTTIIESSLNVLEPAEYR 372

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 4e-06
 Identities = 53/456 (11%), Positives = 119/456 (26%), Gaps = 140/456 (30%)

Query: 1   MASCSCSSSLALPELRF---LSPKAASR--------YHLSLSKQSLYRSFLYKNYPRCNL 49
           + +C+   ++     +    + P   SR          +   +  L R    K Y  C L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 50  GRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGS 109
                          V+   +  +       F ++      +   + +    V  + + +
Sbjct: 249 ---------------VLLNVQNAKAWNA---FNLS-----CKI-LLTTRFKQVTDFLSAA 284

Query: 110 LVKYVNGNGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQE--KVEVS 167
              ++               +  +E     +  K           +     Q+  +  ++
Sbjct: 285 TTTHI-------SLDHHSMTLTPDEVK--SLLLK-----------YLDCRPQDLPREVLT 324

Query: 168 VAP-------------GGRWSRFKTY------STIQRTLEIWG-------FVLTFVFRA- 200
             P                W  +K        + I+ +L +         F    VF   
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 201 -----------WLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFST 249
                      W +         M    K+ +   + K  KES + +   ++++  +   
Sbjct: 385 AHIPTILLSLIWFDV---IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 250 RVDI---LAQEY-VDELSELQDQVPPFPSETAVSIVEEELGAPLDDVF------------ 293
              +   +   Y + +  +  D +PP                 LD  F            
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPP----------------YLDQYFYSHIGHHLKNIE 485

Query: 294 --ERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP 351
             ER  +  +       +   +++ +          L  L    LK  +    Y+   DP
Sbjct: 486 HPERMTLFRMVFLDFRFL-EQKIRHDSTAWNASGSILNTL--QQLKFYK---PYICDNDP 539

Query: 352 KSDGAKRDWVAIYDECASVLY--QEIDYTQEAANAE 385
           K +      +    +    L   +  D  + A  AE
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT} Length = 312

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 26/242 (10%), Positives = 68/242 (28%), Gaps = 22/242 (9%)

Query: 281 VEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLR 340
           + + L       +     E + +  + ++     + + V VK+     + +F  +   L 
Sbjct: 24  ISQVLAEQFGAYYFIKHKEKLYSGEMNEIWLINDEVQTVFVKINERSYRSMFRAEADQLA 83

Query: 341 VIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
           ++A+      P                  +L        + ++  +FA     +  ++ P
Sbjct: 84  LLAKTNSINVPLV----YGIGNSQGHSFLLLEALNKSKNKQSSFTIFAEKIAQLHQIQGP 139

Query: 401 TIF-WEY-----TTPQILTME--YVPGIKINRIQSLDELGVDR--KRLGRYAVESYLEQI 450
             +  ++        Q    +  +      NRI    ++  ++         +   +   
Sbjct: 140 DKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIVADT 199

Query: 451 LSH-----GFFHADPHPGNIAVDD---VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIY 502
           LS         H +    N    D          ++          ++ E     FY  Y
Sbjct: 200 LSKHNPKPSILHGNLWIENCIQVDDKIFVCNPACYWGDRECDIAFSSLFEPFPTNFYQRY 259

Query: 503 EK 504
            +
Sbjct: 260 NE 261

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 42.2 bits (98), Expect = 5e-04
 Identities = 34/215 (15%), Positives = 60/215 (27%), Gaps = 29/215 (13%)

Query: 298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDID--LKNLRVIAE--YLQKIDPKS 353
            E I     G+V +       V +K+      DL +         ++ E    +++   S
Sbjct: 25  CEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLS 84

Query: 354 DGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILT 413
                         +    Q   Y      A    ++ K     + P  F +     +L 
Sbjct: 85  GEVCNRTEGFIGLNSVHCVQG-SYPPLLLKAWDHYNSTKGSANDR-PDFFKDDQLFIVLE 142

Query: 414 MEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL--------SHGFFHADPHPGNI 465
            E+           +D   +  K       +S L Q+         S  F H D H GN+
Sbjct: 143 FEF---------GGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNV 193

Query: 466 AVDDVNGGRLIF------YDFGMMGSISPNIREGL 494
            +   +  +L +            G     I   L
Sbjct: 194 LLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTL 228

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	766
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.93
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.84
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.82
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.81
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.8
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.8
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.79
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.79
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.79
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.79
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.78
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.78
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.78
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.77
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.76
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.74
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.74
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.74
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.73
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.72
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.72
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.71
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.69
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.69
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.68
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.67
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.67
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.66
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.66
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.66
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.65
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.65
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.65
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.64
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.64
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.64
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.64
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.64
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.63
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.63
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.63
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.63
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.63
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.62
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.62
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.62
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.62
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.62
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.62
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.61
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.61
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.61
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.61
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.61
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.61
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.61
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.61
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.6
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.6
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.6
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.6
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.6
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.6
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.6
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.6
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.6
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.6
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.6
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.6
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.6
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.6
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.6
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.59
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.59
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.59
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.59
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.59
3niz_A	311	Rhodanese family protein; structural genomics, str	99.59
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.59
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.59
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.59
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.59
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.59
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.59
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.59
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.58
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.58
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.58
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.58
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.58
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.58
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.58
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.58
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.58
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.58
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.58
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.58
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.58
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.58
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.58
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.58
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.57
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.57
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.57
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.57
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.57
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.57
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.57
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.57
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.57
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.57
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.57
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.57
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.57
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.57
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.56
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.56
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.56
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.56
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.56
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.56
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.56
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.56
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.56
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.56
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.56
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.56
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.56
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.56
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.56
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.56
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.56
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.56
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.56
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.56
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.56
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.56
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.56
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.55
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.55
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.55
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.55
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.55
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.55
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.55
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.55
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.55
3bhy_A	283	Death-associated protein kinase 3; death associate	99.55
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.55
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.55
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.55
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.55
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.55
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.54
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.54
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.54
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.54
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.54
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.54
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.54
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.54
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.54
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.54
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.54
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.54
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.53
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.53
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.53
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.53
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.53
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.53
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.53
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.53
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.53
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.53
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.53
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.53
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.53
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.53
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.53
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.53
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.52
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.52
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.52
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.52
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.52
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.52
3uqc_A	286	Probable conserved transmembrane protein; structur	99.52
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.52
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.52
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.52
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.52
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.51
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.51
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.51
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.51
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.51
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.51
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.51
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.51
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.51
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.51
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.5
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.5
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.5
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.5
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.5
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.5
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.5
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.5
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.5
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.5
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.49
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.49
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.49
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.49
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.49
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.49
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.49
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.49
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.49
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.49
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.49
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.49
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.48
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.48
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.48
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.48
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.48
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.48
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.48
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.48
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.48
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.47
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.47
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.47
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.46
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.46
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.46
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.45
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.45
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.44
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.44
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.44
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.44
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.44
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.43
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.43
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.41
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.39
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.39
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.38
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.37
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.36
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.33
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.21
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.09
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.91
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.84
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.84
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.76
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.64
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.63
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.58
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.48
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	98.37
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.35
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.32
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	98.29
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	98.29
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	98.07
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	98.03
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	98.02
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.93
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.84
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	97.74
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	97.58
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	97.57
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	97.04
3mes_A	424	Choline kinase; malaria, structural genomics, stru	97.02
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	96.98
1cja_A	342	Protein (actin-fragmin kinase); transferase; HET:	86.84

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.93  E-value=2.6e-26  Score=250.51  Aligned_cols=265  Identities=14%  Similarity=0.092  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHHhhCCcee-ehhhHHhhCccCCCHHHHHHHHhhhhCCCCCChHHHHHHHHHHhCCChhhhhhccCc----
Q 004234          224 ALAKWLKESILRLGPTFI-KIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDV----  298 (766)
Q Consensus       224 ~~a~~lr~~le~lGptfI-KlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~----  298 (766)
                      ..|+++.+.+.++++.++ +++|.+...++..+ +++.+++++||.+||.+++.+...++.+++.+..+.|..|..    
T Consensus        20 ~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   98 (365)
T 2y7j_A           20 RRARREIRHLPNLNREQRRAFIRSLRDDPSQSA-NLLAEAKKLNDAQPKGTENLYFQSMGPEDELPDWAAAKEFYQKYDP   98 (365)
T ss_dssp             ---------------------------------------------------------------CBCHHHHHHHHHHHEEE
T ss_pred             HHHHHHHhcCccchhcccccccccccCCCchhH-HHHHHHHhhhhcCCCCccccccccCCchhhcccchhhhhhhhhccc
Confidence            458889999999999998 99999988877665 567789999999999999999999999999998888887765    


Q ss_pred             -ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          299 -EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       299 -~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                       ++||+|++|+||+|++  +|+.||||+++++.......|+                            +++.+.+.+|+
T Consensus        99 ~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~----------------------------~~~~~~~~~E~  150 (365)
T 2y7j_A           99 KDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQL----------------------------EEVREATRRET  150 (365)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHH----------------------------HHHHHHHHHHH
T ss_pred             ceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHH----------------------------HHHHHHHHHHH
Confidence             8999999999999998  5999999999887654322221                            23333444444


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      ++.      .++    .++++|..+..+++.++..+|||||++|++|.++... ...++...+...+.+  ..+..+|..
T Consensus       151 ~~l------~~l----~~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~-~~~l~~~~~~~i~~qi~~~L~~LH~~  219 (365)
T 2y7j_A          151 HIL------RQV----AGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTE-KVALSEKETRSIMRSLLEAVSFLHAN  219 (365)
T ss_dssp             HHH------HHH----TTCTTBCCEEEEEEBSSEEEEEECCCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHH------HHh----cCCCCEeEEEEEEeeCCEEEEEEEeCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            443      332    2457787788888888999999999999999987542 233555444433332  347788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC------CCCCCCCHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG------VLVPTGDTTA  527 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG------~~~~~~D~~~  527 (766)
                      |++|+||||+||+++.  +|+++|+|||+++.+++....       ....+++.++++++...+      ..+...|+++
T Consensus       220 gi~H~Dlkp~NIl~~~--~~~ikl~DfG~~~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~s  290 (365)
T 2y7j_A          220 NIVHRDLKPENILLDD--NMQIRLSDFGFSCHLEPGEKL-------RELCGTPGYLAPEILKCSMDETHPGYGKEVDLWA  290 (365)
T ss_dssp             TEECSCCSGGGEEECT--TCCEEECCCTTCEECCTTCCB-------CCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHH
T ss_pred             CeecCCCCHHHEEECC--CCCEEEEecCcccccCCCccc-------ccCCCCCCccChhhccccccccCcCCCchhhHHh
Confidence            9999999999999985  899999999999988764321       113467788888887643      3456789999


Q ss_pred             HHHHHHHHHH
Q 004234          528 VRRTAQFFLN  537 (766)
Q Consensus       528 l~~~i~~~l~  537 (766)
                      +...+.+++.
T Consensus       291 lG~il~ell~  300 (365)
T 2y7j_A          291 CGVILFTLLA  300 (365)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9987776653

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.84  E-value=2.5e-21  Score=223.18  Aligned_cols=243  Identities=15%  Similarity=0.104  Sum_probs=171.6

Q ss_pred             hhhHHhhCccCCCH----HHHHHHH---------------------hhhhCCCCCChHHHHHH----HHHHhCCChhhhh
Q 004234          243 IGQQFSTRVDILAQ----EYVDELS---------------------ELQDQVPPFPSETAVSI----VEEELGAPLDDVF  293 (766)
Q Consensus       243 lGQ~lStR~DllP~----e~~~eL~---------------------~Lqd~vpp~p~~~v~~i----ie~elG~~~eeiF  293 (766)
                      +||+++|++|++|+    +.++++.                     ++||++|+++.+.+..+    .+..++...++++
T Consensus        72 ~~~f~~t~~~~~~~~~~~~~i~e~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~v~~v~~~~~~~l~~~~~~~~~  151 (543)
T 3c4z_A           72 FQQFLRTHEQHGPALQLWKDIEDYDTADDALRPQKAQALRAAYLEPQAQLFCSFLDAETVARARAGAGDGLFQPLLRAVL  151 (543)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHTSTTCTTCCTTSCHHHHHHHHCC---CTTHHHHHHHH
T ss_pred             HHHHHhcCCchhHHHHHHhhhhhhccCchhhHHHHHHHHHHHhhCchhhhhhccCCHHHHhhhhcCCCchhhHHHHHHHH
Confidence            49999999999999    8888888                     79999999999887776    4443433344444


Q ss_pred             hccCcc----------------------------------cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHH
Q 004234          294 ERFDVE----------------------------------PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLK  337 (766)
Q Consensus       294 ~~fd~~----------------------------------PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~  337 (766)
                      ..++..                                  .||+|++|+||+|+.  +|+.||||+.+.....       
T Consensus       152 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~-------  224 (543)
T 3c4z_A          152 AHLGQAPFQEFLDSLYFLRFLQWKWLEAQPMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLK-------  224 (543)
T ss_dssp             HHHTTHHHHHHHTSHHHHHHHHHHHHHTSCCCGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHH-------
T ss_pred             HhhhcCchHhhhhhhhhhhhhhhhhhhcccCChhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhh-------
Confidence            444333                                  499999999999998  5999999987321000       


Q ss_pred             HHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeec
Q 004234          338 NLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYV  417 (766)
Q Consensus       338 il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyi  417 (766)
                                .                      ....-.+.+|.+.+.++     ++++|.....+.+..+..+|||||+
T Consensus       225 ----------~----------------------~~~~~~~~~E~~iL~~l-----~hp~Iv~l~~~~~~~~~l~lVmE~~  267 (543)
T 3c4z_A          225 ----------K----------------------RKGYQGAMVEKKILAKV-----HSRFIVSLAYAFETKTDLCLVMTIM  267 (543)
T ss_dssp             ----------H----------------------TTCHHHHHHHHHHHHHC-----CCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             ----------h----------------------hHHHHHHHHHHHHHHhc-----CCCCEeeEEEEEeeCCEEEEEEEec
Confidence                      0                      00112345566666554     3344444434444556789999999


Q ss_pred             CCCChhhhhhhh---hcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHH
Q 004234          418 PGIKINRIQSLD---ELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIRE  492 (766)
Q Consensus       418 eG~~L~d~~~l~---~~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~  492 (766)
                      +|++|.+.....   ...++...+...+.+  ..+..+|..|++|+|+||+||+++.  +|.++|+|||++..+......
T Consensus       268 ~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~--~g~vkL~DFGla~~~~~~~~~  345 (543)
T 3c4z_A          268 NGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDD--DGNVRISDLGLAVELKAGQTK  345 (543)
T ss_dssp             TTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECT--TSCEEECCCTTCEECCTTCCC
T ss_pred             cCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeC--CCCEEEeecceeeeccCCCcc
Confidence            999998864321   223555544443333  3478899999999999999999985  899999999999987654211


Q ss_pred             HHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          493 GLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       493 ~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                            .....+++.++++++......+...|++++...+.+++.
T Consensus       346 ------~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyellt  384 (543)
T 3c4z_A          346 ------TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIA  384 (543)
T ss_dssp             ------BCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             ------cccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHh
Confidence                  111257888999999877666778899999988877664

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.82  E-value=3.1e-20  Score=203.02  Aligned_cols=186  Identities=14%  Similarity=0.135  Sum_probs=127.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||.||+|+.  +|+.||||+.+..-...                                  +..      -.
T Consensus        30 ~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~----------------------------------~~~------~~   69 (350)
T 4b9d_A           30 QKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSS----------------------------------KER------EE   69 (350)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEEEECTTSCH----------------------------------HHH------HH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCH----------------------------------HHH------HH
Confidence            6899999999999998  59999999985321110                                  001      13


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc-CCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~-g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|++.+.++.    +..-|.+-.++ +..+..+||||||+|++|.++...... .++...+...+.+  ..+..+|..
T Consensus        70 ~~~E~~il~~l~----HpnIV~~~~~~-~~~~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~  144 (350)
T 4b9d_A           70 SRREVAVLANMK----HPNIVQYRESF-EENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR  144 (350)
T ss_dssp             HHHHHHHHHHCC----CTTBCCEEEEE-EETTEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCC----CCCCCcEEEEE-EECCEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            556777666552    32223333333 335667999999999999997643332 2344444433333  348889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|||+||+|||++.  +|.++|+|||+++.+......  .    ....+++.+++++++.-.-.+..+|++++...++
T Consensus       145 ~IiHRDlKp~NILl~~--~g~vKl~DFGla~~~~~~~~~--~----~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvily  216 (350)
T 4b9d_A          145 KILHRDIKSQNIFLTK--DGTVQLGDFGIARVLNSTVEL--A----RACIGTPYYLSPEICENKPYNNKSDIWALGCVLY  216 (350)
T ss_dssp             TCEETTCCGGGEEECT--TCCEEECSTTEESCCCHHHHH--H----HHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CeeeccCCHHHEEECC--CCCEEEcccccceeecCCccc--c----cccCCCccccCHHHHCCCCCCcHHHHHHHHHHHH
Confidence            9999999999999985  899999999999998764321  1    1234799999999998666677789999998887


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       217 emlt  220 (350)
T 4b9d_A          217 ELCT  220 (350)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.81  E-value=3.2e-20  Score=202.65  Aligned_cols=181  Identities=15%  Similarity=0.175  Sum_probs=131.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|+||.||+|+.  +|+.||||+....-..                            +.              -.
T Consensus        80 ~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~----------------------------~~--------------~~  117 (346)
T 4fih_A           80 IKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ----------------------------RR--------------EL  117 (346)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCS----------------------------SG--------------GG
T ss_pred             EEeecCcCeEEEEEEECCCCCEEEEEEEecCchh----------------------------HH--------------HH
Confidence            4699999999999999  5999999987321000                            00              02


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~--~l~qI~~~  453 (766)
                      +.+|++.+..+    . +++ |.+-.++ +..+..+||||||+|++|.++..  ...++...+...+.+.  .+..+|..
T Consensus       118 ~~~Ei~il~~l----~-HpnIV~l~~~~-~~~~~~~ivmEy~~gg~L~~~l~--~~~l~e~~~~~~~~qi~~aL~ylH~~  189 (346)
T 4fih_A          118 LFNEVVIMRDY----Q-HENVVEMYNSY-LVGDELWVVMEFLEGGALTDIVT--HTRMNEEQIAAVCLAVLQALSVLHAQ  189 (346)
T ss_dssp             GHHHHHHHHHC----C-CTTBCCEEEEE-EETTEEEEEECCCTTEEHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhC----C-CCCCCcEEEEE-EECCEEEEEEeCCCCCcHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            34555555544    2 333 3333333 33567899999999999998754  3456666655554443  48889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|||+||+|||++.  +|.++|+|||++..++.....      .....+++.+++++++...-..+.+|++++...++
T Consensus       190 ~IiHRDlKp~NILl~~--~g~vKl~DFGla~~~~~~~~~------~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvily  261 (346)
T 4fih_A          190 GVIHRDIKSDSILLTH--DGRVKLSDFGFCAQVSKEVPR------RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVI  261 (346)
T ss_dssp             TEECCCCSGGGEEECT--TCCEEECCCTTCEECCSSSCC------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHH
T ss_pred             CcccccCCHHHEEECC--CCCEEEecCcCceecCCCCCc------ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHH
Confidence            9999999999999985  899999999999988654211      11235899999999998776788889999999888


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       262 eml~  265 (346)
T 4fih_A          262 EMVD  265 (346)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.80  E-value=8.4e-20  Score=204.20  Aligned_cols=182  Identities=15%  Similarity=0.179  Sum_probs=132.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|+||.||+|+.  +|+.||||+....-..                            +.        +      .
T Consensus       157 ~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~----------------------------~~--------~------~  194 (423)
T 4fie_A          157 IKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ----------------------------RR--------E------L  194 (423)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEESTTCS----------------------------SG--------G------G
T ss_pred             eEeccCcCcEEEEEEECCCCCEEEEEEEeccchh----------------------------HH--------H------H
Confidence            5799999999999999  5999999988421100                            00        0      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~--~l~qI~~~G  454 (766)
                      +.+|+..+..+    .+..-|.+-.++ +..+..+||||||+|++|.++..  ...++...+...+.+.  .+..+|..|
T Consensus       195 ~~~Ei~il~~l----~HpnIV~l~~~~-~~~~~~~iVmEy~~gG~L~~~i~--~~~l~e~~~~~~~~qil~aL~ylH~~~  267 (423)
T 4fie_A          195 LFNEVVIMRDY----QHENVVEMYNSY-LVGDELWVVMEFLEGGALTDIVT--HTRMNEEQIAAVCLAVLQALSVLHAQG  267 (423)
T ss_dssp             HHHHHHHHHHC----CCTTBCCEEEEE-EETTEEEEEEECCTTEEHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----CCCCCCceEEEE-EECCEEEEEEeCCCCCcHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34555555544    232223333333 33567899999999999999754  3456666655554443  488899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|||+||+|||++.  +|.++|+|||++..++.....      .....+++.+|+++++.-.-..+.+|++++...+++
T Consensus       268 IiHRDiKp~NILl~~--~g~vKl~DFGla~~~~~~~~~------~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilye  339 (423)
T 4fie_A          268 VIHRDIKSDSILLTH--DGRVKLSDFGFCAQVSKEVPR------RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIE  339 (423)
T ss_dssp             EECCCCSTTTEEECT--TCCEEECCCTTCEECCSSCCC------BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHH
T ss_pred             eecccCCHHHEEEcC--CCCEEEecCccceECCCCCcc------ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHH
Confidence            999999999999986  899999999999988654211      112357899999999987777888899999988887


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       340 ml~  342 (423)
T 4fie_A          340 MVD  342 (423)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.80  E-value=1.4e-19  Score=194.54  Aligned_cols=185  Identities=15%  Similarity=0.111  Sum_probs=126.0

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||+|+||.||+|++++ .||||+.+..-...                                  +      ..-+|.
T Consensus        42 ~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~----------------------------------~------~~~~f~   80 (307)
T 3omv_A           42 TRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTP----------------------------------E------QFQAFR   80 (307)
T ss_dssp             EECCCCSSSEEEEEESSS-EEEEEECCCSSCCH----------------------------------H------HHHHHH
T ss_pred             eEEeeCCCcEEEEEEECC-cEEEEEEEecCCCH----------------------------------H------HHHHHH
Confidence            679999999999999865 59999974321100                                  0      011466


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeee-ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~-e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      +|++.+.+++     +++|.  +.+. ......+|||||++|++|.++.......++.......+.+  ..+..+|..|+
T Consensus        81 ~E~~il~~l~-----HpNIV--~l~g~~~~~~~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~I  153 (307)
T 3omv_A           81 NEVAVLRKTR-----HVNIL--LFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNI  153 (307)
T ss_dssp             HHHHHHTTCC-----CTTBC--CEEEEECSSSCEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCC-----CCCEe--eEEEEEECCeEEEEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            7777666542     34332  2222 1235579999999999999976544445666655554433  34888999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc---CCCCCCCCHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM---GVLVPTGDTTAVRRTA  532 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l---G~~~~~~D~~~l~~~i  532 (766)
                      +|||+||.|||++.  ++.++|+|||+++.++.......    .....+++.+|+|+++..   +..+..+|+++|.-.+
T Consensus       154 iHRDlKp~NILl~~--~~~~Ki~DFGla~~~~~~~~~~~----~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl  227 (307)
T 3omv_A          154 IHRDMKSNNIFLHE--GLTVKIGDFGLATVKSRWSGSQQ----VEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVL  227 (307)
T ss_dssp             BCSCCCSSSEEEET--TEEEEECCCSSCBC----------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHH
T ss_pred             cCCccCHHHEEECC--CCcEEEeeccCceecccCCccee----ecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHH
Confidence            99999999999986  88999999999987765332221    122457899999999864   3355678999999888


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       228 ~Ellt  232 (307)
T 3omv_A          228 YELMT  232 (307)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77764

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.79  E-value=1.7e-19  Score=192.76  Aligned_cols=219  Identities=15%  Similarity=0.102  Sum_probs=152.4

Q ss_pred             HHHhhhhCCCCCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHH
Q 004234          261 ELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKN  338 (766)
Q Consensus       261 eL~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~i  338 (766)
                      ....|.-..++++++++++.++..++.+....+-.+. ++||+|++|+||+|++  +|+.||||+.++......      
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~------   86 (321)
T 2c30_A           14 GTENLYFQSGVVTHEQFKAALRMVVDQGDPRLLLDSY-VKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRR------   86 (321)
T ss_dssp             -----------CCHHHHHHHHHTTSCSSCHHHHEEEE-EEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSH------
T ss_pred             hccceeecCCcCcHHHHHHHHhhccCCCCchhhhhcc-EEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHH------
Confidence            3345666778999999999999888876554443322 4899999999999998  599999999865432210      


Q ss_pred             HHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecC
Q 004234          339 LRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVP  418 (766)
Q Consensus       339 l~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyie  418 (766)
                                                          -.+.+|+..+.++     .++++.-+.-+....+..++||||++
T Consensus        87 ------------------------------------~~~~~E~~~l~~l-----~h~niv~~~~~~~~~~~~~lv~e~~~  125 (321)
T 2c30_A           87 ------------------------------------ELLFNEVVIMRDY-----QHFNVVEMYKSYLVGEELWVLMEFLQ  125 (321)
T ss_dssp             ------------------------------------HHHHHHHHHHTTC-----CCTTBCCEEEEEEETTEEEEEECCCC
T ss_pred             ------------------------------------HHHHHHHHHHHhC-----CCCCcceEEEEEEECCEEEEEEecCC
Confidence                                                0234555555443     23455444444555678899999999


Q ss_pred             CCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHH
Q 004234          419 GIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE  496 (766)
Q Consensus       419 G~~L~d~~~l~~~g~d~~~la~~lv~~--~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~  496 (766)
                      |++|.++..  ...++...+...+.+.  .+..+|..|++|+|+||+||+++.  ++.++|+|||++..++......   
T Consensus       126 ~~~L~~~l~--~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~--~~~~kl~Dfg~~~~~~~~~~~~---  198 (321)
T 2c30_A          126 GGALTDIVS--QVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTL--DGRVKLSDFGFCAQISKDVPKR---  198 (321)
T ss_dssp             SCBHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECT--TCCEEECCCTTCEECCSSSCCB---
T ss_pred             CCCHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECC--CCcEEEeeeeeeeecccCcccc---
Confidence            999998753  3446666655555443  388899999999999999999985  8899999999998876532110   


Q ss_pred             HHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          497 AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       497 l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                         ....+++.++++++...+..++..|++++...+.+++.
T Consensus       199 ---~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~  236 (321)
T 2c30_A          199 ---KSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVD  236 (321)
T ss_dssp             ---CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             ---ccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHh
Confidence               11246778899999887777788899999987776653

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.79  E-value=4.2e-20  Score=198.94  Aligned_cols=187  Identities=18%  Similarity=0.189  Sum_probs=130.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||+||+|+.  +|+.||||+......                ...                 +.      .-.
T Consensus        38 ~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~----------------~~~-----------------~~------~~~   78 (311)
T 4aw0_A           38 KILGEGSFSTVVLARELATSREYAIKILEKRHI----------------IKE-----------------NK------VPY   78 (311)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH----------------HHT-----------------TC------HHH
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEEEHHHC----------------CCH-----------------HH------HHH
Confidence            6899999999999998  699999999832100                000                 00      012


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|.+.+.++    . +|+ |.+-.++ +-.+..+|||||++|++|.++... ...++...+...+.+  ..+..+|..
T Consensus        79 ~~~E~~il~~l----~-HpnIv~l~~~~-~~~~~~yivmEy~~gG~L~~~i~~-~~~l~e~~~~~~~~qi~~al~ylH~~  151 (311)
T 4aw0_A           79 VTRERDVMSRL----D-HPFFVKLYFTF-QDDEKLYFGLSYAKNGELLKYIRK-IGSFDETCTRFYTAEIVSALEYLHGK  151 (311)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEE-ECSSEEEEEECCCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhC----C-CCCCCeEEEEE-EeCCEEEEEEecCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            44555555443    2 333 3333333 334567999999999999987532 234555554444333  348889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|||+||+|||++.  +|.++|+|||++..+++......    .....+++.+|+|+++.-.-....+|++++...++
T Consensus       152 ~IiHRDlKPeNILl~~--~g~vKl~DFGla~~~~~~~~~~~----~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvily  225 (311)
T 4aw0_A          152 GIIHRDLKPENILLNE--DMHIQITDFGTAKVLSPESKQAR----ANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIY  225 (311)
T ss_dssp             TEECSCCSGGGEEECT--TSCEEECCCTTCEECCTTTTCCC----BCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHH
T ss_pred             CCccCCCCHHHeEEcC--CCCEEEEEcCCceecCCCCCccc----ccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHH
Confidence            9999999999999985  89999999999998875433211    11235799999999998766777889999998888


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       226 eml~  229 (311)
T 4aw0_A          226 QLVA  229 (311)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7764

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.79  E-value=1.3e-19  Score=197.05  Aligned_cols=183  Identities=17%  Similarity=0.132  Sum_probs=124.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||.||+|+.  +|+.||||+.+.....                                              
T Consensus        64 ~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~----------------------------------------------   97 (336)
T 4g3f_A           64 PRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR----------------------------------------------   97 (336)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC----------------------------------------------
T ss_pred             cEeccCCCeEEEEEEECCCCCEEEEEEECHHHhH----------------------------------------------
Confidence            5699999999999998  5999999998532100                                              


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                       .+|++.+..    +.+..-|.+-.++ +.....+||||||+|++|.++... ...++...+...+.+  ..+..+|.+|
T Consensus        98 -~~E~~il~~----l~HpnIV~l~~~~-~~~~~~~ivmEy~~gg~L~~~l~~-~~~l~e~~~~~~~~qi~~aL~ylH~~~  170 (336)
T 4g3f_A           98 -VEELVACAG----LSSPRIVPLYGAV-REGPWVNIFMELLEGGSLGQLIKQ-MGCLPEDRALYYLGQALEGLEYLHTRR  170 (336)
T ss_dssp             -THHHHTTTT----CCCTTBCCEEEEE-EETTEEEEEECCCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             -HHHHHHHHh----CCCCCCCcEEEEE-EECCEEEEEEeccCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence             123333322    2222223332333 234567999999999999997642 233555555544433  3488899999


Q ss_pred             ccccCCCCCcEEEeecCCC-cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGG-RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g-~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      ++|||+||+|||++.  +| +++|+|||+++.+.+.....-. .....+.+++.+|+|+++.-.-.+..+|++++...++
T Consensus       171 IiHRDlKp~NILl~~--~g~~vKl~DFGla~~~~~~~~~~~~-~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvily  247 (336)
T 4g3f_A          171 ILHGDVKADNVLLSS--DGSRAALCDFGHALCLQPDGLGKSL-LTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMML  247 (336)
T ss_dssp             EECSCCCGGGEEECT--TSCCEEECCCTTCEEC-------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHH
T ss_pred             ceecccCHHHEEEeC--CCCEEEEeeCCCCeEccCCCcccce-ecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHH
Confidence            999999999999985  66 6999999999988654321100 0112235899999999998766777889999998888


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       248 emlt  251 (336)
T 4g3f_A          248 HMLN  251 (336)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.79  E-value=1.8e-19  Score=193.58  Aligned_cols=185  Identities=14%  Similarity=0.150  Sum_probs=130.3

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|+||.||+|++       +|+.||||+.++......                                       
T Consensus        32 ~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~---------------------------------------   72 (308)
T 4gt4_A           32 EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPL---------------------------------------   72 (308)
T ss_dssp             EEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-C---------------------------------------
T ss_pred             eEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHH---------------------------------------
Confidence            4699999999999997       257899999854322110                                       


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhh---------------hcCCCH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---------------ELGVDR  435 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~---------------~~g~d~  435 (766)
                        .-+|.+|+..+.+++     +|+| .+-.++ ......+|||||++|++|.++....               ...++.
T Consensus        73 --~~~f~~E~~il~~l~-----HpNIV~l~g~~-~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~  144 (308)
T 4gt4_A           73 --REEFRHEAMLRARLQ-----HPNVVCLLGVV-TKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEP  144 (308)
T ss_dssp             --HHHHHHHHHHHHHCC-----CTTBCCEEEEE-CSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCH
T ss_pred             --HHHHHHHHHHHHhCC-----CCCCCCcceEE-EECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCH
Confidence              114667777666652     3433 222222 2345679999999999999976322               122444


Q ss_pred             HHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004234          436 KRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (766)
Q Consensus       436 ~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l  513 (766)
                      ..+...+.+  ..+..+|..|++|||+||.|||+++  ++.++|.|||+++.+........    .+...+.+.+++|++
T Consensus       145 ~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~--~~~~Ki~DFGlar~~~~~~~~~~----~~~~~gt~~ymAPE~  218 (308)
T 4gt4_A          145 PDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYD--KLNVKISDLGLFREVYAADYYKL----LGNSLLPIRWMAPEA  218 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCSCCBCGGGGGGCBCS----SSSSCBCGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCccccceEECC--CCCEEECCcccceeccCCCceeE----ecccccCCcccCHHH
Confidence            454444433  4488899999999999999999986  88999999999988755432111    112346788999999


Q ss_pred             HHcCCCCCCCCHHHHHHHHHHHH
Q 004234          514 VQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       514 ~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +..+..+..+|+++|.-.+.+++
T Consensus       219 l~~~~~s~ksDVwSfGvvl~El~  241 (308)
T 4gt4_A          219 IMYGKFSIDSDIWSYGVVLWEVF  241 (308)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCCccchhhhHHHHHHHHH
Confidence            99888888999999998877665

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.78  E-value=3.4e-19  Score=193.16  Aligned_cols=185  Identities=16%  Similarity=0.091  Sum_probs=121.8

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|+||+||+|++       +|+.||||+.+..-..                                         
T Consensus        47 ~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~-----------------------------------------   85 (329)
T 4aoj_A           47 WELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASES-----------------------------------------   85 (329)
T ss_dssp             EEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHH-----------------------------------------
T ss_pred             EEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHH-----------------------------------------
Confidence            5799999999999986       2789999998432110                                         


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh--------------cCCCHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE--------------LGVDRKR  437 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~--------------~g~d~~~  437 (766)
                       ..-+|.+|++.+.++    . +|+|.--.-+.......+|||||++|++|.++.....              ..++...
T Consensus        86 -~~~~f~~E~~il~~l----~-HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~  159 (329)
T 4aoj_A           86 -ARQDFQREAELLTML----Q-HQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQ  159 (329)
T ss_dssp             -HHHHHHHHHHHHTTC----C-CTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHH
T ss_pred             -HHHHHHHHHHHHHhC----C-CCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHH
Confidence             011467777766654    2 3433222222233456799999999999998753211              1244444


Q ss_pred             HHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004234          438 LGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (766)
Q Consensus       438 la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~  515 (766)
                      +...+.+  ..+..+|..|++|||+||.|||++.  ++.++|+|||+++.+........    ..-..+.+.+|+|++..
T Consensus       160 ~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~--~~~~Ki~DFGla~~~~~~~~~~~----~~~~~gt~~ymAPE~~~  233 (329)
T 4aoj_A          160 LLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQ--GLVVKIGDFGMSRDIYSTDYYRV----GGRTMLPIRWMPPESIL  233 (329)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEET--TTEEEECCCC--------------------CCCCGGGCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcCCeecccccHhhEEECC--CCcEEEcccccceeccCCCccee----cCcccccccccChhhhc
Confidence            4444433  3478899999999999999999986  89999999999998765433221    12234688899999998


Q ss_pred             cCCCCCCCCHHHHHHHHHHHH
Q 004234          516 MGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       516 lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      .+..+..+|+++|...+.+++
T Consensus       234 ~~~~~~~sDvwS~Gvvl~Ell  254 (329)
T 4aoj_A          234 YRKFTTESDVWSFGVVLWEIF  254 (329)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccccccchHHHHHHHH
Confidence            888888889999998877665

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.78  E-value=1e-19  Score=194.72  Aligned_cols=184  Identities=15%  Similarity=0.139  Sum_probs=127.9

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|+||+||+|++       +|+.||||+.+..-.+                                         
T Consensus        19 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~-----------------------------------------   57 (299)
T 4asz_A           19 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDN-----------------------------------------   57 (299)
T ss_dssp             EEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHH-----------------------------------------
T ss_pred             eEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChH-----------------------------------------
Confidence            5799999999999986       2688999988532110                                         


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhh------------hcCCCHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLD------------ELGVDRKRL  438 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~------------~~g~d~~~l  438 (766)
                       ..-+|.+|++.+.++    . +|+| .+-.++ ......+|||||++|++|.++....            ...++...+
T Consensus        58 -~~~~f~~E~~il~~l----~-HpnIV~l~g~~-~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~  130 (299)
T 4asz_A           58 -ARKDFHREAELLTNL----Q-HEHIVKFYGVC-VEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQM  130 (299)
T ss_dssp             -HHHHHHHHHHHHTTC----C-CTTBCCEEEEE-CSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHH
T ss_pred             -HHHHHHHHHHHHHhC----C-CCCCccEEEEE-eeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHH
Confidence             012466777766554    2 3433 222222 2345689999999999999975321            123455554


Q ss_pred             HHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004234          439 GRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (766)
Q Consensus       439 a~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l  516 (766)
                      ...+.+  ..+..+|.+|++|||+||.|||++.  ++.++|+|||+++.+........    .....+.+.+++|+++..
T Consensus       131 ~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~--~~~~Ki~DFGla~~~~~~~~~~~----~~~~~gt~~ymAPE~~~~  204 (299)
T 4asz_A          131 LHIAQQIAAGMVYLASQHFVHRDLATRNCLVGE--NLLVKIGDFGMSRDVYSTDYYRV----GGHTMLPIRWMPPESIMY  204 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCCSCHHHHTGGGCEEE----TTTEEECGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcccCccCHhhEEECC--CCcEEECCcccceecCCCCceee----cCceecChhhcCHHHHcC
Confidence            444433  3478899999999999999999986  88999999999987655432111    011236788999999998


Q ss_pred             CCCCCCCCHHHHHHHHHHHH
Q 004234          517 GVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       517 G~~~~~~D~~~l~~~i~~~l  536 (766)
                      +..++.+|++++.-.+.+++
T Consensus       205 ~~~~~k~DVwS~Gvvl~Ell  224 (299)
T 4asz_A          205 RKFTTESDVWSLGVVLWEIF  224 (299)
T ss_dssp             CCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHH
Confidence            88888899999998877765

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.78  E-value=4.9e-19  Score=189.33  Aligned_cols=190  Identities=14%  Similarity=0.061  Sum_probs=116.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||+||+|+.  +|+.||||+.+..-.+                                   ...      -.
T Consensus        11 ~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~-----------------------------------~~~------~~   49 (299)
T 4g31_A           11 QCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRE-----------------------------------LAR------EK   49 (299)
T ss_dssp             EEEEECC--EEEEEEETTTCCEEEEEEEEECSSH-----------------------------------HHH------HH
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEeccCCH-----------------------------------HHH------HH
Confidence            6899999999999998  6999999987321100                                   001      13


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeeccCC-----------CeEEEEeecCCCChhhhhhhhhc--CCCHHHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEYTT-----------PQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRYA  442 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~st-----------~~vLVMEyieG~~L~d~~~l~~~--g~d~~~la~~l  442 (766)
                      +.+|++.+.++    . +|+ |.+-.++.+-.+           ..+|||||++|++|.++......  ..+...+...+
T Consensus        50 ~~~E~~il~~l----~-HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~  124 (299)
T 4g31_A           50 VMREVKALAKL----E-HPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIF  124 (299)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEEEEEC----------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHhC----C-CCCCCeEEEEEEecCccccccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHH
Confidence            45566655543    2 333 223233322111           14899999999999987542211  12222222222


Q ss_pred             --HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHH------HHHHHhhcCHHHHHHHHH
Q 004234          443 --VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE------AFYGIYEKDADKVLQAMV  514 (766)
Q Consensus       443 --v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~------l~~a~~~~D~~~v~~~l~  514 (766)
                        +...+..+|..|++|||+||+|||++.  +|.++|+|||+++.++.........      .-..-..+++.+|+|+++
T Consensus       125 ~qi~~al~ylH~~~IiHRDlKp~NILl~~--~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~  202 (299)
T 4g31_A          125 LQIAEAVEFLHSKGLMHRDLKPSNIFFTM--DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQI  202 (299)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCGGGEEECT--TCCEEECCCCCC--------------------------CCCTTSCHHHH
T ss_pred             HHHHHHHHHHHHCcCccccCcHHHeEECC--CCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHH
Confidence              223478899999999999999999985  8999999999999887643322110      001112478999999999


Q ss_pred             HcCCCCCCCCHHHHHHHHHHHH
Q 004234          515 QMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       515 ~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      .-.-.++.+|++++.-.+.+++
T Consensus       203 ~~~~y~~~~DiwSlGvilyell  224 (299)
T 4g31_A          203 HGNSYSHKVDIFSLGLILFELL  224 (299)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHc
Confidence            8776778889999998887765

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.77  E-value=1.1e-18  Score=184.75  Aligned_cols=183  Identities=15%  Similarity=0.185  Sum_probs=115.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||+||+|+.  +|+.||||+.+......                                 .+.      +-.
T Consensus        19 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~---------------------------------~~~------~~~   59 (275)
T 3hyh_A           19 KTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAK---------------------------------SDM------QGR   59 (275)
T ss_dssp             EEEEC---CCEEEEECTTTCCEEEEEEEECC---------------------------------------C------HHH
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCC---------------------------------HHH------HHH
Confidence            6899999999999998  69999999985432110                                 000      113


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|++.+.++    . +|+ |.+-.++ +..+..+|||||++ +.|.+... ....++...+.....+  ..++.+|.+
T Consensus        60 ~~~Ei~il~~l----~-HpnIv~~~~~~-~~~~~~~ivmEy~~-g~L~~~l~-~~~~l~e~~~~~~~~qi~~al~ylH~~  131 (275)
T 3hyh_A           60 IEREISYLRLL----R-HPHIIKLYDVI-KSKDEIIMVIEYAG-NELFDYIV-QRDKMSEQEARRFFQQIISAVEYCHRH  131 (275)
T ss_dssp             HHHHHHHHHHC----C-CTTBCCEEEEE-ECSSEEEEEEECCC-EEHHHHHH-HSCSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHC----C-CCCCCeEEEEE-EECCEEEEEEeCCC-CCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            45666666554    2 343 3333333 33566799999995 56666542 2234555554444433  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~-~~~~~D~~~l~~~i  532 (766)
                      |++|||+||+|||++.  +|.++|+|||++...++....       ....+++.+++|++..-.. ..+.+|++++...+
T Consensus       132 ~IiHRDiKP~NILl~~--~~~vkl~DFGla~~~~~~~~~-------~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvil  202 (275)
T 3hyh_A          132 KIVHRDLKPENLLLDE--HLNVKIADFGLSNIMTDGNFL-------KTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVIL  202 (275)
T ss_dssp             TCCCCCCCTTTEEECT--TCCEEECCSSCC----------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHH
T ss_pred             CcccccCChHHeEECC--CCCEEEeecCCCeecCCCCcc-------CCeeECcccCChhhhcCCCCCCChhhhHHHHHHH
Confidence            9999999999999985  899999999999887654321       1234788999999986543 34568999999888


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      ++++.
T Consensus       203 y~llt  207 (275)
T 3hyh_A          203 YVMLC  207 (275)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77764

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.76  E-value=1.4e-19  Score=194.23  Aligned_cols=184  Identities=17%  Similarity=0.194  Sum_probs=124.0

Q ss_pred             ccccccceeEEEEEee-----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|+||+||+|+.     +|+.||||+.+......                          .+.             
T Consensus        30 ~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~--------------------------~~~-------------   70 (304)
T 3ubd_A           30 KVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKV--------------------------RDR-------------   70 (304)
T ss_dssp             EEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEE--------------------------EEC-------------
T ss_pred             EEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcCh--------------------------HHH-------------
Confidence            6799999999999986     37899999986532211                          000             


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                       ..+.+|++.+.+    +. +|+| .+-.++ +..+..+|||||++|++|.++... ...++...+...+.+  ..+..+
T Consensus        71 -~~~~~E~~il~~----l~-HpnIv~l~~~~-~~~~~~~ivmEy~~gg~L~~~l~~-~~~l~e~~~~~~~~qi~~aL~yl  142 (304)
T 3ubd_A           71 -VRTKMERDILVE----VN-HPFIVKLHYAF-QTEGKLYLILDFLRGGDLFTRLSK-EVMFTEEDVKFYLAELALALDHL  142 (304)
T ss_dssp             -C------CCCCC----CC-CTTEECEEEEE-EETTEEEEEECCCTTCEEHHHHHH-HCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHH----CC-CCCCCeEEEEE-EECCEEEEEEEcCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHH
Confidence             012334332222    22 3332 232333 335667999999999999987542 234555555444433  348889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|||+||+|||++.  +|.++|+|||+++.+......      .....+++.+++|+++.-.-.++.+|++++..
T Consensus       143 H~~~IiHRDlKp~NILl~~--~g~vKl~DFGla~~~~~~~~~------~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGv  214 (304)
T 3ubd_A          143 HSLGIIYRDLKPENILLDE--EGHIKLTDFGLSKESIDHEKK------AYSFCGTVEYMAPEVVNRRGHTQSADWWSFGV  214 (304)
T ss_dssp             HHTTCCCSSCCGGGEEECT--TSCEEEESSEEEEC-----CC------CCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHH
T ss_pred             HHCCCcCCCCCHHHeEEcC--CCCEEecccccceeccCCCcc------ccccccCcccCCHHHhccCCCCCCCcccchHH
Confidence            9999999999999999986  899999999999876443211      11235899999999998877788889999998


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+++++.
T Consensus       215 ilyemlt  221 (304)
T 3ubd_A          215 LMFEMLT  221 (304)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8877764

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.74  E-value=1.7e-18  Score=189.58  Aligned_cols=187  Identities=15%  Similarity=0.075  Sum_probs=130.1

Q ss_pred             ccccccceeEEEEEeec-------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|+||.||+|++.       ++.||||+.+.+....                                        
T Consensus        70 ~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~----------------------------------------  109 (353)
T 4ase_A           70 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS----------------------------------------  109 (353)
T ss_dssp             EEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHH----------------------------------------
T ss_pred             eEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChH----------------------------------------
Confidence            68999999999999973       3689999885443211                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDR  435 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~  435 (766)
                       ..-+|.+|++.+.++.    ++++ |.+-.++.+-....+||||||+|++|.++.....               ..++.
T Consensus       110 -~~~~~~~E~~il~~l~----hhpnIV~l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~  184 (353)
T 4ase_A          110 -EHRALMSELKILIHIG----HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTL  184 (353)
T ss_dssp             -HHHHHHHHHHHHHHHC----CCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCH
T ss_pred             -HHHHHHHHHHHHHHcC----CCCcEEEEEEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCH
Confidence             1124667777766663    3332 2333333222345799999999999999764221               11344


Q ss_pred             HHHHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004234          436 KRLGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (766)
Q Consensus       436 ~~la~~lv--~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l  513 (766)
                      ..+.....  ...+..+|..|++|||+||.|||++.  ++.++|+|||+++.+.......    ..+...+.+.+|+|++
T Consensus       185 ~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NILl~~--~~~vKi~DFGlar~~~~~~~~~----~~~~~~gt~~ymAPE~  258 (353)
T 4ase_A          185 EHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSE--KNVVKICDFGLARDIYKDPDYV----RKGDARLPLKWMAPET  258 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCCGGGSCTTTCTTSE----EETTEEECGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHHhHhhCCeecCccCccceeeCC--CCCEEECcchhhhhcccCCCce----eeccccccccccCHHH
Confidence            44444333  33478899999999999999999986  8899999999999875432110    0112346788999999


Q ss_pred             HHcCCCCCCCCHHHHHHHHHHHH
Q 004234          514 VQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       514 ~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +.-+..+..+|+++|.-.+.+++
T Consensus       259 l~~~~y~~ksDVwS~Gv~l~El~  281 (353)
T 4ase_A          259 IFDRVYTIQSDVWSFGVLLWEIF  281 (353)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHT
T ss_pred             HhcCCCCCcccEeehHHHHHHHH
Confidence            98888888899999998776654

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.74  E-value=2e-18  Score=184.15  Aligned_cols=187  Identities=13%  Similarity=0.050  Sum_probs=126.8

Q ss_pred             ccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          295 RFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       295 ~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      .|+ +.||+|+||.||+|++  +|+.||||+........                                  ..     
T Consensus        29 ~~~-~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~----------------------------------~~-----   68 (290)
T 3fpq_A           29 KFD-IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTK----------------------------------SE-----   68 (290)
T ss_dssp             EEE-EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH----------------------------------HH-----
T ss_pred             Eee-eEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCH----------------------------------HH-----
Confidence            344 3599999999999998  58999999874321100                                  00     


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l  447 (766)
                       .-.|.+|++.+.++    .+..-|.+-.++....   ...+||||||+|++|.++... ...++...+...+.+  ..+
T Consensus        69 -~~~~~~E~~il~~l----~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~aL  142 (290)
T 3fpq_A           69 -RQRFKEEAEMLKGL----QHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKR-FKVMKIKVLRSWCRQILKGL  142 (290)
T ss_dssp             -HHHHHHHHHHHHTC----CCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhC----CCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHH
Confidence             11356677666554    2222233333332211   225899999999999997542 233455444433333  347


Q ss_pred             HHHHhCC--ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004234          448 EQILSHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (766)
Q Consensus       448 ~qI~~~G--ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~  525 (766)
                      ..+|.+|  ++|||+||+|||++. ++|.++|+|||+++.......        ....+++.+|+|++.. +-.++.+|+
T Consensus       143 ~ylH~~~~~IiHRDlKp~NILl~~-~~g~vKl~DFGla~~~~~~~~--------~~~~GTp~YmAPE~~~-~~y~~~~Di  212 (290)
T 3fpq_A          143 QFLHTRTPPIIHRDLKCDNIFITG-PTGSVKIGDLGLATLKRASFA--------KAVIGTPEFMAPEMYE-EKYDESVDV  212 (290)
T ss_dssp             HHHHTSSSCCCCCCCCGGGEEESS-TTSCEEECCTTGGGGCCTTSB--------EESCSSCCCCCGGGGG-TCCCTHHHH
T ss_pred             HHHHHCCCCEEecccChhheeEEC-CCCCEEEEeCcCCEeCCCCcc--------CCcccCccccCHHHcC-CCCCcHHHH
Confidence            8899998  999999999999974 368999999999976544321        1235789999999886 446778899


Q ss_pred             HHHHHHHHHHHH
Q 004234          526 TAVRRTAQFFLN  537 (766)
Q Consensus       526 ~~l~~~i~~~l~  537 (766)
                      +++...+.+++.
T Consensus       213 wSlGvilyellt  224 (290)
T 3fpq_A          213 YAFGMCMLEMAT  224 (290)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988877664

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.74  E-value=1.1e-18  Score=186.62  Aligned_cols=185  Identities=16%  Similarity=0.115  Sum_probs=118.7

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||+|+||.||+|+++|+.||||+.+..-..                                           +..+.
T Consensus         9 ~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~~~-------------------------------------------~~~~e   45 (303)
T 3hmm_A            9 ESIGKGRFGEVWRGKWRGEEVAVKIFSSREER-------------------------------------------SWFRE   45 (303)
T ss_dssp             EEEEECSSSEEEEEEETTEEEEEEEECGGGHH-------------------------------------------HHHHH
T ss_pred             EEEeeCCCeEEEEEEECCEEEEEEEECccchh-------------------------------------------hHHHH
Confidence            57999999999999999999999987432100                                           00111


Q ss_pred             HHHHHHHHHHHhcCCCCcc-ccceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          379 QEAANAELFASNFKDMDYV-KVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      .|...+.+    +. +++| .+-.++.+-.   ...+|||||++|++|.++..  ..+++.........+  ..+..+|.
T Consensus        46 ~Ei~~~~~----l~-HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~l~--~~~l~~~~~~~i~~~ia~gl~ylH~  118 (303)
T 3hmm_A           46 AEIYQTVM----LR-HENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN--RYTVTVEGMIKLALSTASGLAHLHM  118 (303)
T ss_dssp             HHHHTSTT----CC-CTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHH--HCCBCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhc----CC-CCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            22222111    22 3332 2222222111   24589999999999999754  344555555544443  34777886


Q ss_pred             C--------CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC------
Q 004234          453 H--------GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV------  518 (766)
Q Consensus       453 ~--------GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~------  518 (766)
                      +        |++|||+||.|||++.  ++.++|+|||+++.++.........  ..-..+++.+++|+++.-..      
T Consensus       119 ~~~~~~~~~~IiHRDlKp~NILl~~--~~~~Ki~DFGla~~~~~~~~~~~~~--~~~~~GT~~ymAPE~l~~~~~~~~~~  194 (303)
T 3hmm_A          119 EIVGTQGKPAIAHRDLKSKNILVKK--NGTCCIADLGLAVRHDSATDTIDIA--PNHRVGTKRYMAPEVLDDSINMKHFE  194 (303)
T ss_dssp             CBCSTTCBCCEECSCCCGGGEEECT--TSCEEECCCTTCEEEETTTTEESCC-------CCGGGCCHHHHTTCSCTTCHH
T ss_pred             hhhhccCCCCEeeccCCcccEEECC--CCCEEEEeCCCCccccCCCCceeee--cccccccccccCHHHhcccccccCCc
Confidence            6        9999999999999986  8999999999998775432211000  01124788999999986432      


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 004234          519 LVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       519 ~~~~~D~~~l~~~i~~~l~  537 (766)
                      .++.+|+++|.-.+.+++.
T Consensus       195 ~~~k~DVwS~Gvvl~El~t  213 (303)
T 3hmm_A          195 SFKRADIYAMGLVFWEIAR  213 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             cChhHhhhhHHHHHHHHHH
Confidence            2345799999988777653

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.73  E-value=1.4e-18  Score=189.52  Aligned_cols=244  Identities=11%  Similarity=0.069  Sum_probs=151.3

Q ss_pred             HhhCccCCCHHHHHHHHhhh-hCCCCCChHHHHHHHHHHhCCChhhhh----------hccC-cccccccceeEEEEEee
Q 004234          247 FSTRVDILAQEYVDELSELQ-DQVPPFPSETAVSIVEEELGAPLDDVF----------ERFD-VEPIAAASLGQVHRARL  314 (766)
Q Consensus       247 lStR~DllP~e~~~eL~~Lq-d~vpp~p~~~v~~iie~elG~~~eeiF----------~~fd-~~PIgsaSiGQVhrA~l  314 (766)
                      -|+|.|++++++.+++..++ +.+++.+...+...+..++- +.+..+          ..|. .++||+|++|+||+|++
T Consensus        16 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~~~lG~G~~g~V~~a~~   94 (377)
T 3byv_A           16 FQGPGDVVIEELFNRIPQANVRTTSEYMQSAADSLVSTSLW-NTGQPFRVESELGERPRTLVRGTVLGQEDPYAYLEATD   94 (377)
T ss_dssp             -CCTTHHHHHHHHHHCGGGCCCSTTC-CHHHHHHHHHHHTC-C-CCEEEEEESSSCCCEEEEEEEEEEEETTEEEEEEEC
T ss_pred             CCCCchHHHHHHHHhCcccccccccccccchhhhhhHHHhc-CCCCcEEEEeecCCCCceEEEcceeecCCCEEEEEEEE
Confidence            36889999999999999999 99999999999888887762 222222          2232 37899999999999997


Q ss_pred             --cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH---HHH--HHHHHHHH
Q 004234          315 --KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID---YTQ--EAANAELF  387 (766)
Q Consensus       315 --~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD---f~~--EA~Nl~~f  387 (766)
                        +|+.||||+.++.....-. +                                .+.+.+|+.   ...  ...|+.++
T Consensus        95 ~~~~~~vavK~~~~~~~~~~~-~--------------------------------~~~~~~E~~~l~~l~~l~hpniv~~  141 (377)
T 3byv_A           95 QETGESFEVHVPYFTERPPSN-A--------------------------------IKQMKEEVLRLRLLRGIKNQKQAKV  141 (377)
T ss_dssp             -CCCCEEEEEEEEECC-CCTT-H--------------------------------HHHHHHHHHGGGGSTTCCSHHHHHH
T ss_pred             CCCCcEEEEEEEeeccccchH-H--------------------------------HHHHHHHHHHHHhccccCCHHHHHH
Confidence              5999999998543111100 0                                011112221   111  11345554


Q ss_pred             HHhcCCCCcc-ccc---eeeeccC-------CCeEEEEeecCCCChhhhhhhh-hcCCC-----HHHHHHHH--HHHHHH
Q 004234          388 ASNFKDMDYV-KVP---TIFWEYT-------TPQILTMEYVPGIKINRIQSLD-ELGVD-----RKRLGRYA--VESYLE  448 (766)
Q Consensus       388 ~~~f~~~~~V-~vP---~v~~e~s-------t~~vLVMEyieG~~L~d~~~l~-~~g~d-----~~~la~~l--v~~~l~  448 (766)
                      ...+.....+ ..+   .......       ...+|+|||++ ++|.++.... ....+     ...+...+  +...+.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~-g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~  220 (377)
T 3byv_A          142 HLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQ-SNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLA  220 (377)
T ss_dssp             HHCBCCCSEEEECTTSCSEEEC------CEEESEEEEEECCS-EEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhhhccCCccccccccCCCceEEEEEEEEEeccC-CCHHHHHHhccccccccccccHHHHHHHHHHHHHHHH
Confidence            4322211000 000   0000000       13689999995 5888865422 12121     12222222  223477


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-----------
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-----------  517 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-----------  517 (766)
                      .+|..|++|+|+||+||+++.  ++.++|+|||++...+....         ...+ ..++++++...+           
T Consensus       221 ~LH~~~ivHrDikp~NIll~~--~~~~kL~DFG~a~~~~~~~~---------~~~g-~~y~aPE~~~~~~~~~~~~~~~~  288 (377)
T 3byv_A          221 SLHHYGLVHTYLRPVDIVLDQ--RGGVFLTGFEHLVRDGARVV---------SSVS-RGFEPPELEARRATISYHRDRRT  288 (377)
T ss_dssp             HHHHTTEECSCCCGGGEEECT--TCCEEECCGGGCEETTCEEE---------CCCC-TTCCCHHHHHHHTSTHHHHCCEE
T ss_pred             HHHhCCeecCCCCHHHEEEcC--CCCEEEEechhheecCCccc---------CCCC-cCccChhhhcccccccccccccc
Confidence            889999999999999999985  88999999999987654221         1234 667778777765           


Q ss_pred             CCCCCCCHHHHHHHHHHHHH
Q 004234          518 VLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       518 ~~~~~~D~~~l~~~i~~~l~  537 (766)
                      ..++..|++++...+.+++.
T Consensus       289 ~~~~~~DvwSlG~il~ellt  308 (377)
T 3byv_A          289 LMTFSFDAWALGLVIYWIWC  308 (377)
T ss_dssp             ECCHHHHHHHHHHHHHHHHH
T ss_pred             cCChhhhHHHHHHHHHHHHH
Confidence            56777899999988776654

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.72  E-value=2.1e-17  Score=177.28  Aligned_cols=220  Identities=14%  Similarity=0.120  Sum_probs=123.1

Q ss_pred             hhCCCCCChHHHHHHHHHHhCCChhhhhhccCc----------ccccccceeEEEEEeec------CeeEEEEEecCCcc
Q 004234          266 QDQVPPFPSETAVSIVEEELGAPLDDVFERFDV----------EPIAAASLGQVHRARLK------GEEVVVKVQRPGLK  329 (766)
Q Consensus       266 qd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~----------~PIgsaSiGQVhrA~l~------G~~VAVKVqrP~i~  329 (766)
                      +++.+.-|.......++...+..+.+.+..|..          +.||+|++|+||+|++.      +..||||+.+++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~   86 (333)
T 1mqb_A            7 HHHHDYDIPTTENLYFQGAMGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYT   86 (333)
T ss_dssp             -------------------------------CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCC
T ss_pred             ccccccCCCCCccccccccccCChhhhhhhccccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCC
Confidence            455566666777788888888888888777765          68999999999999982      24699999865432


Q ss_pred             chHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCC
Q 004234          330 DLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTP  409 (766)
Q Consensus       330 ~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~  409 (766)
                      ..                                         .+.+|.+|++.+.++     .++++.-..-+......
T Consensus        87 ~~-----------------------------------------~~~~~~~E~~~l~~l-----~h~~iv~~~~~~~~~~~  120 (333)
T 1mqb_A           87 EK-----------------------------------------QRVDFLGEAGIMGQF-----SHHNIIRLEGVISKYKP  120 (333)
T ss_dssp             HH-----------------------------------------HHHHHHHHHHHHHTC-----CCTTBCCEEEEECSSSS
T ss_pred             HH-----------------------------------------HHHHHHHHHHHHHhC-----CCCCCCcEEEEEecCCC
Confidence            11                                         122455666655544     23333222223334567


Q ss_pred             eEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccC
Q 004234          410 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS  487 (766)
Q Consensus       410 ~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~--~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~  487 (766)
                      .+|||||++|++|.++.......++...+...+.+.  .+..+|..|++|+|+||+||+++.  ++.++|+|||++..+.
T Consensus       121 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~--~~~~kl~Dfg~~~~~~  198 (333)
T 1mqb_A          121 MMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNS--NLVCKVSDFGLSRVLE  198 (333)
T ss_dssp             EEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECT--TCCEEECCCCC-----
T ss_pred             cEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECC--CCcEEECCCCcchhhc
Confidence            799999999999999765443446666655554443  478899999999999999999985  8899999999998876


Q ss_pred             hhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          488 PNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       488 ~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ........   ......+..+++++....+..++..|++++...+.+++
T Consensus       199 ~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell  244 (333)
T 1mqb_A          199 DDPEATYT---TSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVM  244 (333)
T ss_dssp             ---------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred             cccccccc---cCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHH
Confidence            54322211   11122355688888887776677789999887776654

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.72  E-value=2.7e-17  Score=180.35  Aligned_cols=185  Identities=15%  Similarity=0.139  Sum_probs=121.2

Q ss_pred             ccccccceeEEEEEee-----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|+||+||+|+.     +++.||||+..+.-..                                           
T Consensus        27 ~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~-------------------------------------------   63 (361)
T 4f9c_A           27 DKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHP-------------------------------------------   63 (361)
T ss_dssp             EEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCH-------------------------------------------
T ss_pred             EEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCH-------------------------------------------
Confidence            5799999999999986     2689999987442110                                           


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                       ..+.+|.+.+..+    .++++ |.+-.++ +..+..+|||||++|++|.++..    .++...+...+.+  ..+..+
T Consensus        64 -~~~~~E~~~l~~~----~~h~nIv~l~~~~-~~~~~~~lvmE~~~g~~L~~~~~----~l~~~~~~~~~~qll~al~yl  133 (361)
T 4f9c_A           64 -IRIAAELQCLTVA----GGQDNVMGVKYCF-RKNDHVVIAMPYLEHESFLDILN----SLSFQEVREYMLNLFKALKRI  133 (361)
T ss_dssp             -HHHHHHHHHHHHT----CSBTTBCCCSEEE-EETTEEEEEEECCCCCCHHHHHT----TCCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHh----cCCCCCceEEEEE-EECCEEEEEEeCCCcccHHHHHc----CCCHHHHHHHHHHHHHHHHHH
Confidence             1122333333322    22333 3333444 33567799999999999988652    2444444333333  347889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHH----------------HH------HHHHHHhhcCHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG----------------LL------EAFYGIYEKDADK  508 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~----------------l~------~l~~a~~~~D~~~  508 (766)
                      |..|++|||+||+|||++. +.+.++|+|||+++.+.+.....                ..      .-...-..+++.+
T Consensus       134 H~~gIiHRDiKPeNiLl~~-~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y  212 (361)
T 4f9c_A          134 HQFGIVHRDVKPSNFLYNR-RLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGF  212 (361)
T ss_dssp             HHTTEECSCCSGGGEEEET-TTTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGG
T ss_pred             HHCCeEeCcCCHHHeEEeC-CCCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccc
Confidence            9999999999999999985 34899999999998664321100                00      0001223478999


Q ss_pred             HHHHHHHcC-CCCCCCCHHHHHHHHHHHHH
Q 004234          509 VLQAMVQMG-VLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       509 v~~~l~~lG-~~~~~~D~~~l~~~i~~~l~  537 (766)
                      ++|+++.-. ..+...|++++...+.+++.
T Consensus       213 ~APE~l~~~~~y~~~~DiWSlG~il~ell~  242 (361)
T 4f9c_A          213 RAPEVLTKCPNQTTAIDMWSAGVIFLSLLS  242 (361)
T ss_dssp             CCHHHHTTCSCCCTHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHcCCCCCCCccchhhhHHHHHHHHH
Confidence            999988543 35666799999988887764

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.71  E-value=4e-17  Score=191.39  Aligned_cols=187  Identities=17%  Similarity=0.141  Sum_probs=126.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|+||.||+|+.  +|+.||||+.+...                +..+          +             .+-.
T Consensus       195 k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~----------------i~~~----------~-------------~~~~  235 (689)
T 3v5w_A          195 RIIGRGGFGEVYGCRKADTGKMYAMKCLDKKR----------------IKMK----------Q-------------GETL  235 (689)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH----------------HHHT----------T-------------CHHH
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEEeHHH----------------cchh----------h-------------hHHH
Confidence            6799999999999999  69999999983210                0000          0             0001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccc-cceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVK-VPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~-vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      ..+|. ++..+.... ++|+|. +-.++ +-.+..+|||||++|++|.++... ...++...+...+.+  ..+..+|..
T Consensus       236 ~~~E~-~~l~ll~~~-~HP~IV~l~~~f-~~~~~lylVmEy~~GGdL~~~l~~-~~~l~E~~a~~y~~qIl~aL~yLH~~  311 (689)
T 3v5w_A          236 ALNER-IMLSLVSTG-DCPFIVCMSYAF-HTPDKLSFILDLMNGGDLHYHLSQ-HGVFSEADMRFYAAEIILGLEHMHNR  311 (689)
T ss_dssp             HHHHH-HHHHHHSSS-CCTTBCCEEEEE-ECSSEEEEEECCCCSCBHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHH-HHHHHHhhC-CCCCEeEEEEEE-EECCEEEEEEecCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            11121 111222222 234332 22222 334567999999999999987532 233555444444333  348889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~~i  532 (766)
                      ||+|||+||+|||++.  +|.++|+|||++..++.....        ...+++.||+|+++.-| .....+|.+++...+
T Consensus       312 gIiHRDLKPeNILld~--~G~vKL~DFGlA~~~~~~~~~--------t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvil  381 (689)
T 3v5w_A          312 FVVYRDLKPANILLDE--HGHVRISDLGLACDFSKKKPH--------ASVGTHGYMAPEVLQKGVAYDSSADWFSLGCML  381 (689)
T ss_dssp             TEECCCCSGGGEEECT--TSCEEECCCTTCEECSSCCCC--------SCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHH
T ss_pred             CccccCCchHHeEEeC--CCCEEecccceeeecCCCCCC--------CccCCcCccCHHHHhCCCCCCcHHHHHHHHHHH
Confidence            9999999999999986  899999999999988765321        23589999999999654 356778999999998


Q ss_pred             HHHHHH
Q 004234          533 QFFLNS  538 (766)
Q Consensus       533 ~~~l~~  538 (766)
                      ++++..
T Consensus       382 YEmLtG  387 (689)
T 3v5w_A          382 FKLLRG  387 (689)
T ss_dssp             HHHHHS
T ss_pred             HHHHhC
Confidence            888754

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.69  E-value=2.5e-17  Score=191.06  Aligned_cols=190  Identities=16%  Similarity=0.259  Sum_probs=131.3

Q ss_pred             hccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004234          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (766)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (766)
                      +.|+. +.||.|+||.||+|+.  +|+.||||+.+..-..    |                                .+ 
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~----~--------------------------------~~-  199 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHES----D--------------------------------KE-  199 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHH----H--------------------------------HH-
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchh----h--------------------------------HH-
Confidence            33443 6799999999999998  6999999987321100    0                                01 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004234          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (766)
Q Consensus       371 l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~  448 (766)
                           .+.+|++.+..+    .+..-|.+-.++ +..+..+|||||++|++|.+........++...+...+.+  ..+.
T Consensus       200 -----~~~~Ei~il~~l----~hpnIv~l~~~~-~~~~~~~iv~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~  269 (573)
T 3uto_A          200 -----TVRKEIQTMSVL----RHPTLVNLHDAF-EDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLC  269 (573)
T ss_dssp             -----HHHHHHHHHHHT----CCTTBCCEEEEE-ECSSEEEEEEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhC----CCCCCCeEEEEE-EECCEEEEEEeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence                 234455555444    222223344444 3456789999999999998865333333444444444333  3478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      .+|.+|++|||+||.|||++....|.++|+|||+++.+++....       ....+++.+++++++.-.-.....|++++
T Consensus       270 ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~-------~~~~GT~~y~APEv~~~~~y~~~~DiWSl  342 (573)
T 3uto_A          270 HMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV-------KVTTGTAEFAAPEVAEGKPVGYYTDMWSV  342 (573)
T ss_dssp             HHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEE-------EEECSSGGGCCHHHHTTCCBCHHHHHHHH
T ss_pred             HHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCce-------eeeEECccccCHHHhCCCCCCcHHHHHHH
Confidence            89999999999999999998534589999999999998765321       12357899999999876656667899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+++++.
T Consensus       343 Gvilyeml~  351 (573)
T 3uto_A          343 GVLSYILLS  351 (573)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            987776654

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.69  E-value=3.7e-17  Score=172.43  Aligned_cols=215  Identities=19%  Similarity=0.171  Sum_probs=124.3

Q ss_pred             HHhhhhCCCCCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHH
Q 004234          262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNL  339 (766)
Q Consensus       262 L~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il  339 (766)
                      |+.+|++.||.  ..+++.-++.++....+.|.-.  +.||+|++|.||+|+.  +|+.||||+.+....          
T Consensus         2 l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~y~~~--~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~----------   67 (314)
T 3com_A            2 LETVQLRNPPR--RQLKKLDEDSLTKQPEEVFDVL--EKLGEGSYGSVYKAIHKETGQIVAIKQVPVESD----------   67 (314)
T ss_dssp             ------------------------------CEEEE--EECC----CEEEEEEETTTCCEEEEEEEETTSC----------
T ss_pred             ccccccCCCCc--cchhhcCchhhhhcchhhhhhh--eeeccCCCeEEEEEEECCCCCEEEEEecCchHH----------
Confidence            56788888873  4556666666666655554432  5799999999999998  499999998743210          


Q ss_pred             HHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCC
Q 004234          340 RVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPG  419 (766)
Q Consensus       340 ~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG  419 (766)
                                          ..              ++.+|+..+.++     .++++.-..-+....+..+++|||++|
T Consensus        68 --------------------~~--------------~~~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~  108 (314)
T 3com_A           68 --------------------LQ--------------EIIKEISIMQQC-----DSPHVVKYYGSYFKNTDLWIVMEYCGA  108 (314)
T ss_dssp             --------------------CH--------------HHHHHHHHHHTC-----CCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             --------------------HH--------------HHHHHHHHHHhC-----CCCCCccEEEEEEeCCEEEEEeecCCC
Confidence                                00              233344444333     223332222222335567999999999


Q ss_pred             CChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHH
Q 004234          420 IKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA  497 (766)
Q Consensus       420 ~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l  497 (766)
                      ++|.++.......++...+...+.+  ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......    
T Consensus       109 ~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~----  182 (314)
T 3com_A          109 GSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNT--EGHAKLADFGVAGQLTDTMAKR----  182 (314)
T ss_dssp             EEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECT--TCCEEECCCTTCEECBTTBSCB----
T ss_pred             CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECC--CCCEEEeecccchhhhhhcccc----
Confidence            9999976544445666555544433  3478899999999999999999985  8899999999998775432110    


Q ss_pred             HHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          498 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       498 ~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                        ....++..++++++...+..++..|++++...+.+++.
T Consensus       183 --~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  220 (314)
T 3com_A          183 --NTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAE  220 (314)
T ss_dssp             --CCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHH
T ss_pred             --CccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHh
Confidence              11235677888888877667778899999987776653

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.68  E-value=4.7e-17  Score=178.25  Aligned_cols=193  Identities=16%  Similarity=0.173  Sum_probs=127.8

Q ss_pred             hhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004234          291 DVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (766)
Q Consensus       291 eiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (766)
                      ..|.....+.||+|++|+||+|+.  +|+.||||+.++.-..                                      
T Consensus        87 ~~~~~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~--------------------------------------  128 (373)
T 2x4f_A           87 SFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMK--------------------------------------  128 (373)
T ss_dssp             GTEEEEEEEECC-----CEEEEEETTTCCEEEEEEEECCSHH--------------------------------------
T ss_pred             cceeeecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccc--------------------------------------
Confidence            333333457899999999999998  5999999998543110                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHH
Q 004234          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESY  446 (766)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~  446 (766)
                          ..-.+.+|++.+.++     .+++|.-..-+.......+|||||++|++|.+........++...+...+.  ...
T Consensus       129 ----~~~~~~~E~~~l~~l-----~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~a  199 (373)
T 2x4f_A          129 ----DKEEVKNEISVMNQL-----DHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEG  199 (373)
T ss_dssp             ----HHHHHHHHHHHHTTC-----CCTTBCCEEEEEECSSEEEEEEECCTTCEEHHHHHHTGGGCCHHHHHHHHHHHHHH
T ss_pred             ----cHHHHHHHHHHHHhC-----CCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence                011344555555443     234443333333445677999999999999886543333455554444332  344


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004234          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (766)
Q Consensus       447 l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~  526 (766)
                      +..+|..|++|+|+||+||++....+++++|+|||++..+.+....       ....+++.++++++...+..+...|++
T Consensus       200 L~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~Diw  272 (373)
T 2x4f_A          200 IRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKL-------KVNFGTPEFLAPEVVNYDFVSFPTDMW  272 (373)
T ss_dssp             HHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBC-------CCCCSSCTTCCHHHHTTCBCCHHHHHH
T ss_pred             HHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcccc-------ccccCCCcEeChhhccCCCCCcHHhHH
Confidence            7889999999999999999996434679999999999988654321       112367788899988877777778999


Q ss_pred             HHHHHHHHHHH
Q 004234          527 AVRRTAQFFLN  537 (766)
Q Consensus       527 ~l~~~i~~~l~  537 (766)
                      ++...+.+++.
T Consensus       273 slG~il~ellt  283 (373)
T 2x4f_A          273 SVGVIAYMLLS  283 (373)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99987776653

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.67  E-value=1.3e-16  Score=168.51  Aligned_cols=125  Identities=13%  Similarity=0.043  Sum_probs=86.3

Q ss_pred             eEEEEeecCCCChhhhhhhhhc--CCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceec
Q 004234          410 QILTMEYVPGIKINRIQSLDEL--GVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  485 (766)
Q Consensus       410 ~vLVMEyieG~~L~d~~~l~~~--g~d~~~la~~l--v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~  485 (766)
                      .++||||++|++|.++......  ..+...+...+  +-..+..+|..|++|+|+||+||+++.  ++.++|+|||++..
T Consensus       136 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~--~~~~kL~DfG~a~~  213 (332)
T 3qd2_B          136 LYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTM--DDVVKVGDFGLVTA  213 (332)
T ss_dssp             EEEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECT--TCCEEECCCTTCEE
T ss_pred             EEEEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeC--CCCEEEeecCcccc
Confidence            6899999999999997543211  12222222222  223478899999999999999999985  88999999999998


Q ss_pred             cChhhHHHHHH------HHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          486 ISPNIREGLLE------AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       486 L~~~~r~~l~~------l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ++......-..      .......+++.++++++..-+..++..|++++...+.+++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~  270 (332)
T 3qd2_B          214 MDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELL  270 (332)
T ss_dssp             CSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHH
T ss_pred             cccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHH
Confidence            87653321110      0011123678889999988777778889999998877665

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.67  E-value=2.6e-16  Score=166.11  Aligned_cols=187  Identities=18%  Similarity=0.166  Sum_probs=129.6

Q ss_pred             hccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004234          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (766)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (766)
                      ..|.. +.||+|++|.||+|+.  +|+.||||+....-...                            .        + 
T Consensus        20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------~--------~-   62 (297)
T 3fxz_A           20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK----------------------------K--------E-   62 (297)
T ss_dssp             GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSC----------------------------H--------H-
T ss_pred             hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccH----------------------------H--------H-
Confidence            34433 6899999999999997  69999999874321111                            0        0 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004234          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (766)
Q Consensus       371 l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~  448 (766)
                           .+.+|+..+..+    . +++|.-..-+.......++||||++|++|.++..  ...++...+...+.+  ..+.
T Consensus        63 -----~~~~E~~~l~~l----~-hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~qi~~~l~  130 (297)
T 3fxz_A           63 -----LIINEILVMREN----K-NPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT--ETCMDEGQIAAVCRECLQALE  130 (297)
T ss_dssp             -----HHHHHHHHHHHC----C-CTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHH--HSCCCHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHhcC----C-CCCCCeEeEEEEECCEEEEEEECCCCCCHHHHHh--hcCCCHHHHHHHHHHHHHHHH
Confidence                 133444444332    2 2333222222234567899999999999998753  334565555444433  3478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      .+|..|++|+|+||.||+++.  ++.++|+|||++..+++....      .....+++.++++++..-+..++..|++++
T Consensus       131 ~lH~~~i~H~Dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~Diwsl  202 (297)
T 3fxz_A          131 FLHSNQVIHRDIKSDNILLGM--DGSVKLTDFGFCAQITPEQSK------RSTMVGTPYWMAPEVVTRKAYGPKVDIWSL  202 (297)
T ss_dssp             HHHHTTEECCCCSGGGEEECT--TCCEEECCCTTCEECCSTTCC------BCCCCSCGGGCCHHHHHCSCBCTHHHHHHH
T ss_pred             HHHhCCceeCCCCHHHEEECC--CCCEEEeeCCCceecCCcccc------cCCccCCcCccChhhhcCCCCCcHHHHHHH
Confidence            899999999999999999985  889999999999887654321      112346788899999887777888899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       203 G~il~ell~  211 (297)
T 3fxz_A          203 GIMAIEMIE  211 (297)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            988777653

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.66  E-value=6e-17  Score=179.90  Aligned_cols=189  Identities=17%  Similarity=0.187  Sum_probs=122.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||+||+|+.  +|+.||||+.+......                                  ...+      .
T Consensus        60 ~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~----------------------------------~~~~------~   99 (398)
T 4b99_A           60 ETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVV----------------------------------TNAK------R   99 (398)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSH----------------------------------HHHH------H
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEECccccch----------------------------------HHHH------H
Confidence            6899999999999998  69999999884221100                                  0011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec-----cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-----~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                      +.+|++.+..+    .+..-|.+-.++..     .....+|||||++| .|.++.. ....++...+...+.+  ..+..
T Consensus       100 ~~~Ei~il~~l----~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~g-~L~~~i~-~~~~l~~~~~~~~~~qil~al~y  173 (398)
T 4b99_A          100 TLRELKILKHF----KHDNIIAIKDILRPTVPYGEFKSVYVVLDLMES-DLHQIIH-SSQPLTLEHVRYFLYQLLRGLKY  173 (398)
T ss_dssp             HHHHHHHHHHC----CCTTBCCEEEECCCSSCTTTCCCEEEEEECCSE-EHHHHHT-SSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCcceEeeeeecccccccCCEEEEEEeCCCC-CHHHHHH-hcCCCCHHHHHHHHHHHHHHHHH
Confidence            34566655554    22222333333321     12456999999986 4666542 2234555554444433  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAV  528 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l  528 (766)
                      +|.+|++|||+||+|||++.  +|.++++|||+++.+.......-  ....-..+++.+++++++.- ...+..+|++++
T Consensus       174 lH~~~iiHRDlKP~NIl~~~--~~~~Ki~DFGla~~~~~~~~~~~--~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSl  249 (398)
T 4b99_A          174 MHSAQVIHRDLKPSNLLVNE--NCELKIGDFGMARGLCTSPAEHQ--YFMTEYVATRWYRAPELMLSLHEYTQAIDLWSV  249 (398)
T ss_dssp             HHHTTCBCCCCCGGGEEECT--TCCEEECCCTTCBCC-------C--CCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHH
T ss_pred             HHHCcCcCCCcCccccccCC--CCCEEEeecceeeecccCccccc--cccccceeChHhcCHHHhcCCCCCCChhheehh
Confidence            99999999999999999985  89999999999988754321110  00112357889999998643 345667899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       250 G~il~ell~  258 (398)
T 4b99_A          250 GCIFGEMLA  258 (398)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988877764

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.66  E-value=1.7e-15  Score=157.58  Aligned_cols=184  Identities=21%  Similarity=0.229  Sum_probs=120.5

Q ss_pred             ccccccceeEEEEEee--cCee--EEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEE--VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~--VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      .+||+|++|+||+|++  +|+.  ||||+.+++....-.        ...++.. .+     .+.+..    ....-..+
T Consensus        53 ~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~--------~~~~~~~-~~-----~~~~~~----~~~~~~~~  114 (258)
T 1zth_A           53 GVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDK--------MDEYLYG-DE-----RFDMRR----ISPKEKVF  114 (258)
T ss_dssp             EEEEECSSEEEEEEEEEETTEEEEEEEEEECCC---------------GGGTTT-CT-----TSCC--------CHHHHH
T ss_pred             CEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhh--------HHHhhcc-cc-----hhhhhc----cChHHHHH
Confidence            6899999999999998  7999  999998776421100        0000000 00     011100    00111234


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecC--C---CChhhhhhhhhcCCCHHHHHHHHHHHHHHH
Q 004234          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVP--G---IKINRIQSLDELGVDRKRLGRYAVESYLEQ  449 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyie--G---~~L~d~~~l~~~g~d~~~la~~lv~~~l~q  449 (766)
                      ..+.+|++++.++.+     +++.+|.++.  ....+|||||+.  |   ..|.+... .........++..++. .+..
T Consensus       115 ~~~~~E~~~l~~l~~-----~~i~~p~~~~--~~~~~lVmE~~g~~g~~~~~L~~~~~-~~~~~~~~~i~~qi~~-~l~~  185 (258)
T 1zth_A          115 IWTEKEFRNLERAKE-----AGVSVPQPYT--YMKNVLLMEFIGEDELPAPTLVELGR-ELKELDVEGIFNDVVE-NVKR  185 (258)
T ss_dssp             HHHHHHHHHHHHHHH-----TTCCCCCEEE--EETTEEEEECCEETTEECCBHHHHGG-GGGGSCHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHh-----CCCCCCeEEE--cCCCEEEEEecCCCCCccccHHHHhh-ccChHHHHHHHHHHHH-HHHH
Confidence            467889999998875     3467888885  357899999994  2   25554321 1112234455555443 4677


Q ss_pred             HH-hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004234          450 IL-SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (766)
Q Consensus       450 I~-~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~  520 (766)
                      +| ..|++|+|+||+|||++   + +++|+|||++..++......       ...+|.+.+.+.+..+|+..
T Consensus       186 lH~~~givHrDlkp~NILl~---~-~~~liDFG~a~~~~~~~~~~-------~l~rd~~~~~~~f~~~g~~~  246 (258)
T 1zth_A          186 LYQEAELVHADLSEYNIMYI---D-KVYFIDMGQAVTLRHPMAES-------YLERDVRNIIRFFSKYGVKA  246 (258)
T ss_dssp             HHHTSCEECSSCSTTSEEES---S-SEEECCCTTCEETTSTTHHH-------HHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHCCEEeCCCCHHHEEEc---C-cEEEEECcccccCCCccHHH-------HHHHHHHHHHHHHHHcCCCC
Confidence            88 99999999999999997   4 89999999999887654333       24678899999998998754

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.66  E-value=4e-16  Score=164.65  Aligned_cols=190  Identities=13%  Similarity=0.046  Sum_probs=127.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+..+.-.+                                          ..-.
T Consensus        16 ~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~------------------------------------------~~~~   53 (310)
T 3s95_A           16 EVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEE------------------------------------------TQRT   53 (310)
T ss_dssp             EEEECCSSEEEEEEEETTTCCEEEEEEESCCCHH------------------------------------------HHHH
T ss_pred             ceecCCCCEEEEEEEECCCCcEEEEEEeccCCHH------------------------------------------HHHH
Confidence            6899999999999998  5999999987332110                                          0113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      |.+|++.+.++    . +++|.-..-+.......++||||++|++|.++.......++...+...+.+  ..+..+|..|
T Consensus        54 ~~~E~~~l~~l----~-hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~  128 (310)
T 3s95_A           54 FLKEVKVMRCL----E-HPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMN  128 (310)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CcCcccEEEEEecCCeeEEEEEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            45565555444    2 333322222223356679999999999999976543344555554444333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHH--------HHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA--------FYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l--------~~a~~~~D~~~v~~~l~~lG~~~~~~D~~  526 (766)
                      ++|+|+||+||+++.  ++.++|+|||++..+...........        ......+++.++++++...+..++..|++
T Consensus       129 ivH~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~  206 (310)
T 3s95_A          129 IIHRDLNSHNCLVRE--NKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVF  206 (310)
T ss_dssp             EECSCCSTTSEEECT--TSCEEECCCTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHH
T ss_pred             ccCCCCCcCeEEECC--CCCEEEeecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHH
Confidence            999999999999985  88999999999998765433211000        00023467788999998877777888999


Q ss_pred             HHHHHHHHHHH
Q 004234          527 AVRRTAQFFLN  537 (766)
Q Consensus       527 ~l~~~i~~~l~  537 (766)
                      ++...+.+++.
T Consensus       207 slG~~l~el~~  217 (310)
T 3s95_A          207 SFGIVLCEIIG  217 (310)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99988777653

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.65  E-value=5.5e-16  Score=160.02  Aligned_cols=183  Identities=13%  Similarity=0.066  Sum_probs=128.5

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|++|.||+|+. +++.||||+.+++....                                           -++
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-------------------------------------------~~~   52 (269)
T 4hcu_A           16 QEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-------------------------------------------EDF   52 (269)
T ss_dssp             EEEEECSSCEEEEEEETTTEEEEEEEECTTSBCH-------------------------------------------HHH
T ss_pred             heecCCCccEEEEEEecCCCeEEEEEecccccCH-------------------------------------------HHH
Confidence            6899999999999999 78999999985432111                                           134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      .+|++.+.++.     ++++.-..-+....+..++||||++|++|.++.......++...+...+.+  ..+..+|..|+
T Consensus        53 ~~E~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i  127 (269)
T 4hcu_A           53 IEEAEVMMKLS-----HPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACV  127 (269)
T ss_dssp             HHHHHHHHTCC-----CTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCC-----CCCEeeEEEEEecCCceEEEEEeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            55555555442     233322222223345679999999999999976544444565555444433  34888999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|+||.||+++.  ++.++|+|||++..+........     .....++.++++++...+..++..|++++...+.++
T Consensus       128 ~H~dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l  200 (269)
T 4hcu_A          128 IHRDLAARNCLVGE--NQVIKVSDFGMTRFVLDDQYTSS-----TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEV  200 (269)
T ss_dssp             CCSCCCGGGEEECG--GGCEEECCTTGGGGBCCHHHHST-----TSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             ecCCcchheEEEcC--CCCEEeccccccccccccccccc-----cCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHH
Confidence            99999999999986  78999999999988765432211     112345568888888877777778999998877665


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       201 l  201 (269)
T 4hcu_A          201 F  201 (269)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.65  E-value=1.9e-16  Score=169.47  Aligned_cols=190  Identities=15%  Similarity=0.224  Sum_probs=131.7

Q ss_pred             hhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          293 FERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       293 F~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      +..|.. +.||+|++|.||+|+.  +|+.||+|+.+....                                        
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~----------------------------------------   43 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT----------------------------------------   43 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTH----------------------------------------
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcc----------------------------------------
Confidence            334433 6899999999999998  599999998743210                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHH
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l  447 (766)
                         .+-.+.+|+..+..+    . ++++.-..-+.+..+..++||||++|++|.+........++...+...+.+  ..+
T Consensus        44 ---~~~~~~~E~~~l~~l----~-hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al  115 (321)
T 1tki_A           44 ---DQVLVKKEISILNIA----R-HRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEAL  115 (321)
T ss_dssp             ---HHHHHHHHHHHHHHS----C-CTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             ---cHHHHHHHHHHHHhC----C-CCCCCeEeEEEecCCEEEEEEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence               011244555555443    2 333322222223456789999999999999875433334565555544433  347


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~  527 (766)
                      ..+|..|++|+|+||+||+++...++.++|+|||++..+.+....       ....+++.+++|++...+..++..|+++
T Consensus       116 ~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~Diws  188 (321)
T 1tki_A          116 QFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF-------RLLFTAPEYYAPEVHQHDVVSTATDMWS  188 (321)
T ss_dssp             HHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEE-------EEEESCGGGSCHHHHTTCEECHHHHHHH
T ss_pred             HHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCcc-------ccccCChhhcCcHHhcCCCCCchhhHHH
Confidence            889999999999999999998534689999999999988654321       1234678888999887766677789999


Q ss_pred             HHHHHHHHHH
Q 004234          528 VRRTAQFFLN  537 (766)
Q Consensus       528 l~~~i~~~l~  537 (766)
                      +...+.+++.
T Consensus       189 lG~il~~ll~  198 (321)
T 1tki_A          189 LGTLVYVLLS  198 (321)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9987776654

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.65  E-value=7.3e-16  Score=163.94  Aligned_cols=192  Identities=16%  Similarity=0.141  Sum_probs=123.0

Q ss_pred             hhccCc-ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          293 FERFDV-EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       293 F~~fd~-~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +..|.. +.||+|++|.||+|+.+|+.||||+........                                  +     
T Consensus        36 ~~~y~i~~~lG~G~~g~V~~~~~~~~~vavK~~~~~~~~~----------------------------------~-----   76 (309)
T 3p86_A           36 WCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHA----------------------------------E-----   76 (309)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTEEEEEEEECCCCCSH----------------------------------H-----
T ss_pred             hhHceeeeEeecCCCeEEEEEEECCCcEEEEEecCCCCCH----------------------------------H-----
Confidence            334443 689999999999999999999999985432111                                  0     


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh--cCCCHHHHHHHHHH--HHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE--LGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~--~g~d~~~la~~lv~--~~l  447 (766)
                       ..-.|.+|++.+.++.     ++++.-..-+.......++||||++|++|.++.....  ..++...+...+.+  ..+
T Consensus        77 -~~~~~~~E~~~l~~l~-----hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL  150 (309)
T 3p86_A           77 -RVNEFLREVAIMKRLR-----HPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGM  150 (309)
T ss_dssp             -HHHHHHHHHHHHHHCC-----CTTBCCEEEEECSTTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhCC-----CCCEeeEEEEEEECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence             0113455666665552     2333222222233456799999999999998754221  11444444443333  347


Q ss_pred             HHHHhCC--ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004234          448 EQILSHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (766)
Q Consensus       448 ~qI~~~G--ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~  525 (766)
                      ..+|..|  ++|+|+||+||+++.  ++.++|+|||++.........      .....+++.++++++...+..++..|+
T Consensus       151 ~~LH~~~~~ivH~Dikp~NIll~~--~~~~kL~Dfg~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~Di  222 (309)
T 3p86_A          151 NYLHNRNPPIVHRNLKSPNLLVDK--KYTVKVCDFGLSRLKASTFLS------SKSAAGTPEWMAPEVLRDEPSNEKSDV  222 (309)
T ss_dssp             HHHHTSSSCCCCTTCCGGGEEECT--TCCEEECCCC-----------------------CCTTSCHHHHTTCCCCTTHHH
T ss_pred             HHHHcCCCCEECCCCChhhEEEeC--CCcEEECCCCCCccccccccc------cccCCCCccccChhhhcCCCCCchhhH
Confidence            8899999  999999999999985  889999999999765443211      111245777888998887777788899


Q ss_pred             HHHHHHHHHHHH
Q 004234          526 TAVRRTAQFFLN  537 (766)
Q Consensus       526 ~~l~~~i~~~l~  537 (766)
                      +++...+.+++.
T Consensus       223 wslG~il~ellt  234 (309)
T 3p86_A          223 YSFGVILWELAT  234 (309)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999988776653

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.64  E-value=7.4e-16  Score=162.18  Aligned_cols=187  Identities=14%  Similarity=0.108  Sum_probs=123.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+........                                 .+..      -.
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~~------~~   57 (294)
T 4eqm_A           17 DKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREK---------------------------------EETL------KR   57 (294)
T ss_dssp             EEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCC---------------------------------HHHH------HH
T ss_pred             EEEccCCCEEEEEEEECCCCCeEEEEEeccCcccc---------------------------------HHHH------HH
Confidence            6899999999999998  59999999874322111                                 0011      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      |.+|++.+.++    . ++++.-..-+.+..+..++||||++|++|.++.... ..++...+...+.+  ..+..+|..|
T Consensus        58 ~~~e~~~l~~l----~-hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~  131 (294)
T 4eqm_A           58 FEREVHNSSQL----S-HQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESH-GPLSVDTAINFTNQILDGIKHAHDMR  131 (294)
T ss_dssp             HHHHHHHHTTC----C-BTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcC----C-CCCCceEEEeeeeCCeEEEEEeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            44555544443    2 233322222223445679999999999999875422 23555554444433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||+||+++.  ++.++|+|||++..++.......     ....+++.+++++...-+..++..|++++...+.+
T Consensus       132 i~H~Dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~  204 (294)
T 4eqm_A          132 IVHRDIKPQNILIDS--NKTLKIFDFGIAKALSETSLTQT-----NHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYE  204 (294)
T ss_dssp             CCCCCCCGGGEEECT--TSCEEECCCSSSTTC------------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHH
T ss_pred             cccCCCCHHHEEECC--CCCEEEEeCCCcccccccccccc-----CccccCccccCHhHhcCCCCCchHhHHHHHHHHHH
Confidence            999999999999985  88999999999988765432211     11235777888888887777778899999988776


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       205 ll~  207 (294)
T 4eqm_A          205 MLV  207 (294)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.64  E-value=9.2e-16  Score=159.30  Aligned_cols=181  Identities=14%  Similarity=0.122  Sum_probs=125.0

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|++|.||+|.+ ++..||||+.+++....                                           -++
T Consensus        30 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-------------------------------------------~~~   66 (283)
T 3gen_A           30 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE-------------------------------------------DEF   66 (283)
T ss_dssp             EECC---CEEEEEEEETTTEEEEEEEECTTSBCH-------------------------------------------HHH
T ss_pred             hhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCH-------------------------------------------HHH
Confidence            6899999999999999 67899999985432111                                           124


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      .+|++.+.++.     +++  +++++.  ......++||||++|++|.++.......++...+...+.+  ..+..+|..
T Consensus        67 ~~E~~~l~~l~-----h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~  139 (283)
T 3gen_A           67 IEEAKVMMNLS-----HEK--LVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK  139 (283)
T ss_dssp             HHHHHHHHTCC-----CTT--BCCEEEEECSSSSEEEEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCC-----CCC--EeeEEEEEecCCCeEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            45555554432     233  333333  3345679999999999999976543445666655555443  348889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||+||+++.  ++.++|+|||++..+.......     ......++.++++++...+..++..|++++...+.
T Consensus       140 ~i~H~dikp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~  212 (283)
T 3gen_A          140 QFLHRDLAARNCLVND--QGVVKVSDFGLSRYVLDDEYTS-----SVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMW  212 (283)
T ss_dssp             TCCCSSCSGGGEEECT--TSCEEECSTTGGGGBCCHHHHS-----TTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHH
T ss_pred             CccCCCCccceEEEcC--CCCEEEcccccccccccccccc-----ccCCccCcccCCHHHhccCCCCchhhHHHHHHHHH
Confidence            9999999999999985  8899999999998876543221     11123345678888887776777789999988776


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       213 ~l~  215 (283)
T 3gen_A          213 EIY  215 (283)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.64  E-value=2.6e-16  Score=172.29  Aligned_cols=187  Identities=16%  Similarity=0.144  Sum_probs=117.0

Q ss_pred             ccccccceeEEEEEeec-----CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-----G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|++|.||+|++.     |..||||+.+.+..+.                                         .
T Consensus        51 ~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------~   89 (373)
T 2qol_A           51 KVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK-----------------------------------------Q   89 (373)
T ss_dssp             EEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHH-----------------------------------------H
T ss_pred             eEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHH-----------------------------------------H
Confidence            68999999999999872     6789999986543211                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      .-+|.+|+..+.++     .+++|.-..-+.......+|||||++|++|.++.......++...+...+.+  ..+..+|
T Consensus        90 ~~~~~~E~~~l~~l-----~h~niv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH  164 (373)
T 2qol_A           90 RRDFLGEASIMGQF-----DHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS  164 (373)
T ss_dssp             HHHHHHHHHHHTTC-----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-----CCCCCCeEEEEEeeCCceEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            12455666555444     2333322222223345679999999999999976543334565555544433  3488899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|+||.||+++.  ++.++|+|||++..+..........   ........+++++....+..++..|++++...
T Consensus       165 ~~~ivH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~i  239 (373)
T 2qol_A          165 DMGYVHRDLAARNILINS--NLVCKVSDFGLGRVLEDDPEAAYTT---RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIV  239 (373)
T ss_dssp             HTTCCCSCCCGGGEEECT--TCCEEECCC-------------------------CTTSCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HCCeeCCCCCcceEEEcC--CCCEEECcCccccccccCCccceec---cCCCcCCCccChhhhccCCcCchhcHHHHHHH
Confidence            999999999999999985  8899999999998876543221110   00112345778888877777777899999887


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       240 l~ell  244 (373)
T 2qol_A          240 LWEVM  244 (373)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.64  E-value=9.8e-16  Score=166.82  Aligned_cols=191  Identities=21%  Similarity=0.190  Sum_probs=125.4

Q ss_pred             ccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      .|+. +.||.|++|.||+|+.  +|+.||||+.+......                                 ++...  
T Consensus        24 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~---------------------------------~~~~~--   68 (353)
T 3txo_A           24 NFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQ---------------------------------DDDVE--   68 (353)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------HTTHH--
T ss_pred             heEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcc---------------------------------hhHHH--
Confidence            3443 6899999999999998  59999999984321000                                 00000  


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                          .+..|.+.+..+    .+++++.-..-+.......+|||||++|++|.+.... ...++...+...+.+  ..+..
T Consensus        69 ----~~~~E~~il~~~----~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~  139 (353)
T 3txo_A           69 ----CTMTEKRILSLA----RNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQK-SRRFDEARARFYAAEIISALMF  139 (353)
T ss_dssp             ----HHHHHHHHHHHT----TTCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhc----cCCCceeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHH
Confidence                122333333332    2344443333333445667999999999999886532 233555544443333  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|+|+||.||+++.  +|.++|+|||++.........      .....+++.++++++..-...++..|++++.
T Consensus       140 LH~~givHrDlkp~NILl~~--~g~ikL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  211 (353)
T 3txo_A          140 LHDKGIIYRDLKLDNVLLDH--EGHCKLADFGMCKEGICNGVT------TATFCGTPDYIAPEILQEMLYGPAVDWWAMG  211 (353)
T ss_dssp             HHHTTCBCCCCCGGGEEECT--TSCEEECCCTTCBCSCC---------------CCGGGCCHHHHHHHHCTTHHHHHHHH
T ss_pred             HHHCCCcccCCCHHHEEECC--CCCEEEccccceeecccCCcc------ccccCCCcCeEChhhcCCCCcCCccCCCcch
Confidence            99999999999999999985  899999999999865433221      1123468888999888766667788999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       212 ~il~ell~  219 (353)
T 3txo_A          212 VLLYEMLC  219 (353)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88777654

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.63  E-value=1.1e-15  Score=164.54  Aligned_cols=184  Identities=15%  Similarity=0.122  Sum_probs=125.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+........                                  +...      .
T Consensus        21 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~------~   60 (328)
T 3fe3_A           21 KTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNP----------------------------------TSLQ------K   60 (328)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH----------------------------------HHHH------H
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCH----------------------------------HHHH------H
Confidence            6899999999999998  69999999874321110                                  0001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+..+    . +++|.-..-+.+..+..++||||++|++|.++... ...++...+...+.+  ..+..+|..|
T Consensus        61 ~~~E~~~l~~l----~-hpnIv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~l~~~~~~~~~~qi~~al~~lH~~~  134 (328)
T 3fe3_A           61 LFREVRIMKIL----N-HPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVA-HGRMKEKEARSKFRQIVSAVQYCHQKR  134 (328)
T ss_dssp             HHHHHHHHHHC----C-CTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCCEeeEEEEEEECCEEEEEEECCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34455555444    2 33332222222345667999999999999886532 233454444433332  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC-CCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV-PTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~-~~~D~~~l~~~i~  533 (766)
                      ++|+|+||+||+++.  ++.++|+|||++..++.....       ....+++.++++++..-.... +..|++++...+.
T Consensus       135 ivHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~  205 (328)
T 3fe3_A          135 IVHRDLKAENLLLDA--DMNIKIADFGFSNEFTVGGKL-------DAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILY  205 (328)
T ss_dssp             CCCSCCCGGGEEECT--TSCEEECSTTCCGGGSSSCGG-------GTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHH
T ss_pred             EeccCCCHHHEEEcC--CCCEEEeeccCceecCCCCcc-------ccccCCcceeCcccccCCCcCCchhhhhhhHHHHH
Confidence            999999999999985  889999999999877654321       223467888899888755433 5679999988777


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       206 ell~  209 (328)
T 3fe3_A          206 TLVS  209 (328)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6653

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.63  E-value=3.7e-16  Score=167.24  Aligned_cols=187  Identities=14%  Similarity=0.112  Sum_probs=124.9

Q ss_pred             ccccccceeEEEEEee--c---CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~---G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|++|.||+|++  +   +..||||+.+.+..+.                                         .
T Consensus        55 ~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------------~   93 (325)
T 3kul_A           55 KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTER-----------------------------------------Q   93 (325)
T ss_dssp             EEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHH-----------------------------------------H
T ss_pred             eEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHH-----------------------------------------H
Confidence            6899999999999998  3   4569999986543211                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      .-+|.+|+..+.++    . +++|.-..-+.......+|||||++|++|.++.......++...+...+.+  ..+..+|
T Consensus        94 ~~~~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH  168 (325)
T 3kul_A           94 RRDFLSEASIMGQF----D-HPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLS  168 (325)
T ss_dssp             HHHHHHHHHHHTTC----C-CTTBCCEEEEECGGGCCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----C-CCCCCcEEEEEEeCCccEEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence            11345555555443    2 333322222223345679999999999999976444344565555544433  3478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|+||+||+++.  ++.++|+|||++..+.........   .......+.++++++...+..++..|++++...
T Consensus       169 ~~~ivH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~i  243 (325)
T 3kul_A          169 DLGYVHRDLAARNVLVDS--NLVCKVSDFGLSRVLEDDPDAAYT---TTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVV  243 (325)
T ss_dssp             HTTEECSCCSGGGEEECT--TCCEEECCCSSCEECC----CCEE---CC---CCGGGSCHHHHHHCEECHHHHHHHHHHH
T ss_pred             HCCeeCCCCCcceEEECC--CCCEEECCCCcccccccCccceee---ccCCCCcccccCHhHhcCCCCCcHHHHHHHHHH
Confidence            999999999999999985  889999999999987654221110   000122446788888877777777899999887


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       244 l~ell  248 (325)
T 3kul_A          244 MWEVL  248 (325)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.63  E-value=7.5e-16  Score=163.06  Aligned_cols=192  Identities=21%  Similarity=0.266  Sum_probs=120.8

Q ss_pred             hccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004234          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (766)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (766)
                      ..|.. +.||+|++|+||+|+.  +|+.||||+.+......                                 .+.   
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~~---   55 (311)
T 3ork_A           12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARD---------------------------------PSF---   55 (311)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTS---------------------------------HHH---
T ss_pred             CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCC---------------------------------HHH---
Confidence            34433 6899999999999998  69999999986543211                                 000   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC--CC----eEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH
Q 004234          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT--TP----QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE  444 (766)
Q Consensus       371 l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s--t~----~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~  444 (766)
                         ...+.+|++.+.++    . ++  .+++++..+.  ..    .++||||++|++|.++.... ..++...+...+.+
T Consensus        56 ---~~~~~~E~~~l~~l----~-hp--~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~q  124 (311)
T 3ork_A           56 ---YLRFRREAQNAAAL----N-HP--AIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIAD  124 (311)
T ss_dssp             ---HHHHHHHHTTCCCC----C-CT--TBCCEEEEEEEEETTEEEEEEEEECCCEEEHHHHHHHH-CSCCHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHcC----C-CC--CcceEEEeeeccCCCCcccEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHH
Confidence               01234444433322    1 22  2334443221  22    29999999999999976422 23555554444333


Q ss_pred             --HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004234          445 --SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (766)
Q Consensus       445 --~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~  522 (766)
                        ..+..+|..|++|+|+||+||+++.  ++.++|+|||++..+.........   .....+++.++++++...+..++.
T Consensus       125 i~~~l~~lH~~~ivH~dlkp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~  199 (311)
T 3ork_A          125 ACQALNFSHQNGIIHRDVKPANIMISA--TNAVKVMDFGIARAIADSGNSVTQ---TAAVIGTAQYLSPEQARGDSVDAR  199 (311)
T ss_dssp             HHHHHHHHHHTTCCCCCCCGGGEEEET--TSCEEECCCSCC---------------------CCTTCCHHHHHTCCCCHH
T ss_pred             HHHHHHHHHHCCCCcCCCCHHHEEEcC--CCCEEEeeccCccccccccccccc---ccccCcCcccCCHHHhcCCCCCch
Confidence              3478899999999999999999986  889999999999887654322110   111235778888988887766777


Q ss_pred             CCHHHHHHHHHHHHH
Q 004234          523 GDTTAVRRTAQFFLN  537 (766)
Q Consensus       523 ~D~~~l~~~i~~~l~  537 (766)
                      .|++++...+.+++.
T Consensus       200 ~Di~slG~~l~~ll~  214 (311)
T 3ork_A          200 SDVYSLGCVLYEVLT  214 (311)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHh
Confidence            899999887776653

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.63  E-value=4.4e-16  Score=171.80  Aligned_cols=193  Identities=17%  Similarity=0.236  Sum_probs=132.4

Q ss_pred             hhhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004234          291 DVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (766)
Q Consensus       291 eiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (766)
                      .+++.|+. +.||+|++|+||+|+.  +|+.||+|+.......                                     
T Consensus        48 ~~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~-------------------------------------   90 (387)
T 1kob_A           48 SVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPL-------------------------------------   90 (387)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHH-------------------------------------
T ss_pred             ccccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchh-------------------------------------
Confidence            44555544 7899999999999998  5999999987432110                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--H
Q 004234          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--S  445 (766)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~  445 (766)
                           .+..+.+|+..+..+    . +++|.-..-+.+.....+|||||++|++|.+........++...+...+.+  .
T Consensus        91 -----~~~~~~~E~~il~~l----~-hpnIv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~  160 (387)
T 1kob_A           91 -----DKYTVKNEISIMNQL----H-HPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACE  160 (387)
T ss_dssp             -----HHHHHHHHHHHHTTC----C-STTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHH
T ss_pred             -----hHHHHHHHHHHHHhC----C-CcCCCeEEEEEEeCCEEEEEEEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence                 011334455544433    2 233322222223456779999999999998865433334555555544433  3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~  525 (766)
                      .+..+|..|++|+|+||.||+++...++.++|+|||++..++....       .....+++.++++++...+..+...|+
T Consensus       161 aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~Di  233 (387)
T 1kob_A          161 GLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI-------VKVTTATAEFAAPEIVDREPVGFYTDM  233 (387)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC-------EEEECSSGGGCCHHHHTTCCBCHHHHH
T ss_pred             HHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCCcc-------eeeeccCCCccCchhccCCCCCCcccE
Confidence            4788999999999999999999753457899999999998865421       112346788899998877666677899


Q ss_pred             HHHHHHHHHHHH
Q 004234          526 TAVRRTAQFFLN  537 (766)
Q Consensus       526 ~~l~~~i~~~l~  537 (766)
                      +++...+.+++.
T Consensus       234 wSlG~il~ellt  245 (387)
T 1kob_A          234 WAIGVLGYVLLS  245 (387)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             eeHhHHHHHHHh
Confidence            999887776653

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.62  E-value=2.1e-15  Score=161.58  Aligned_cols=183  Identities=13%  Similarity=0.120  Sum_probs=112.0

Q ss_pred             CcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          297 DVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       297 d~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      ..++||+|++|.||+|+.  +|+.||||+.......                                            
T Consensus        15 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--------------------------------------------   50 (325)
T 3kn6_A           15 KDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEA--------------------------------------------   50 (325)
T ss_dssp             TSCCSEEETTEEEEEEEETTTCCEEEEEEEEGGGHH--------------------------------------------
T ss_pred             CCCccccCCCeEEEEEEECCCCCEEEEEEEChhhhh--------------------------------------------
Confidence            347899999999999999  5999999987432111                                            


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                       ++.+|...+..+.    ++++|.-..-+.+.....+|||||++|++|.+.... ...++...+...+.+  ..+..+|.
T Consensus        51 -~~~~e~~~l~~l~----~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~LH~  124 (325)
T 3kn6_A           51 -NTQKEITALKLCE----GHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKK-KKHFSETEASYIMRKLVSAVSHMHD  124 (325)
T ss_dssp             -HHHHHHHHHHHTT----TCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHhc----CCCCeeEEEEEEEcCCEEEEEEEccCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence             1223333333332    234433222223345667999999999999886542 233555554444333  34788999


Q ss_pred             CCccccCCCCCcEEEeecCCC---cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGG---RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g---~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      .|++|+|+||+||+++.  ++   .++|+|||++..........      ....+++.++++++..-...++..|++++.
T Consensus       125 ~~ivH~Dlkp~NIll~~--~~~~~~~kl~Dfg~a~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~DiwslG  196 (325)
T 3kn6_A          125 VGVVHRDLKPENLLFTD--ENDNLEIKIIDFGFARLKPPDNQPL------KTPCFTLHYAAPELLNQNGYDESCDLWSLG  196 (325)
T ss_dssp             TTEECCCCCGGGEEEEC------CEEEECCCTTCEECCC----------------------------CCCCHHHHHHHHH
T ss_pred             CCCeecCCCHHHEEEec--CCCcccEEEeccccceecCCCCCcc------cccCCCcCccCHHHhcCCCCCCccchHHHH
Confidence            99999999999999985  33   79999999998776543221      112347788899988766666778999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       197 ~il~~ll~  204 (325)
T 3kn6_A          197 VILYTMLS  204 (325)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88777664

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.62  E-value=3e-16  Score=170.03  Aligned_cols=188  Identities=15%  Similarity=0.081  Sum_probs=125.0

Q ss_pred             ccccccceeEEEEEe-----e--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRAR-----L--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~-----l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||.|++|.||+|+     .  +|+.||||+.++.....                                        
T Consensus        71 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------------  110 (365)
T 3e7e_A           71 HLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWE----------------------------------------  110 (365)
T ss_dssp             EEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHH----------------------------------------
T ss_pred             EEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhH----------------------------------------
Confidence            579999999999994     2  58999999986543221                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh----hhcCCCHHHHHHHHHH--H
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL----DELGVDRKRLGRYAVE--S  445 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l----~~~g~d~~~la~~lv~--~  445 (766)
                           +..|.+.+.++....  ++++....-+....+..+|||||++|++|.++...    ....++...+...+.+  .
T Consensus       111 -----~~~e~~~~~~l~~~~--~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~  183 (365)
T 3e7e_A          111 -----FYIGTQLMERLKPSM--QHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLY  183 (365)
T ss_dssp             -----HHHHHHHHHHSCGGG--GGGBCCEEEEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhhhhh--hhhhhhhheeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHH
Confidence                 223333333332111  12222222222345678999999999999997643    2233555555544433  3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEee---------cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDD---------VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~---------~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l  516 (766)
                      .+..+|..|++|+|+||.||+++.         ..++.++|+|||++..+........    .....+++.++++++..-
T Consensus       184 ~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~  259 (365)
T 3e7e_A          184 MIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTI----FTAKCETSGFQCVEMLSN  259 (365)
T ss_dssp             HHHHHHTTTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEE----ECCSSCTTSCCCHHHHTT
T ss_pred             HHHHHhhCCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCce----eeeecCCCCCCChHHhcC
Confidence            478899999999999999999973         1158999999999976532111000    111246788899999887


Q ss_pred             CCCCCCCCHHHHHHHHHHHHH
Q 004234          517 GVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       517 G~~~~~~D~~~l~~~i~~~l~  537 (766)
                      +..+...|++++...+.+++.
T Consensus       260 ~~~~~~~DiwslG~il~ellt  280 (365)
T 3e7e_A          260 KPWNYQIDYFGVAATVYCMLF  280 (365)
T ss_dssp             CCBSTHHHHHHHHHHHHHHHH
T ss_pred             CCCCccccHHHHHHHHHHHHh
Confidence            767788899999988877664

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.62  E-value=8.6e-15  Score=154.75  Aligned_cols=170  Identities=14%  Similarity=0.192  Sum_probs=113.9

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCC-cccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDG-AKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~-~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||+|++|+||+|+. +|+.||||+.+++....-               .. ..... ....|.         ......
T Consensus        96 ~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~---------------~~-~~~~~~~~~~w~---------~~~~~~  150 (282)
T 1zar_A           96 KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFK---------------KV-KEKRDYGDLHFS---------VLAIRS  150 (282)
T ss_dssp             EEEEECSSEEEEEEEETTTEEEEEEEECC---------------------CC-CC-------CHH---------HHHHHH
T ss_pred             CEeccCCCceEEEEEeCCCCEEEEEEEECCCCchh---------------hh-hhhhhhcchhhH---------HHHHHH
Confidence            6899999999999999 799999999976532110               00 00000 000111         112346


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCcc
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFF  456 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~Gff  456 (766)
                      +.+|+..+.++.      . +.+|.++..  +..++||||++|++|.++ ..    .+...++..++. .+..+|..|++
T Consensus       151 ~~~E~~~l~~l~------~-~~v~~~~~~--~~~~lvmE~~~g~~L~~l-~~----~~~~~i~~qi~~-~l~~lH~~gii  215 (282)
T 1zar_A          151 ARNEFRALQKLQ------G-LAVPKVYAW--EGNAVLMELIDAKELYRV-RV----ENPDEVLDMILE-EVAKFYHRGIV  215 (282)
T ss_dssp             HHHHHHHHHHTT------T-SSSCCEEEE--ETTEEEEECCCCEEGGGC-CC----SCHHHHHHHHHH-HHHHHHHTTEE
T ss_pred             HHHHHHHHHhcc------C-CCcCeEEec--cceEEEEEecCCCcHHHc-ch----hhHHHHHHHHHH-HHHHHHHCCCE
Confidence            777888777765      1 567776643  567999999999999883 11    234445444443 46778999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH-HHcCC
Q 004234          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM-VQMGV  518 (766)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l-~~lG~  518 (766)
                      |+|+||+||+++   +|.++|+|||++...+......+       ..+|...+...+ ...|.
T Consensus       216 HrDlkp~NILl~---~~~vkl~DFG~a~~~~~~~a~e~-------l~rdv~~i~~~f~~~~~~  268 (282)
T 1zar_A          216 HGDLSQYNVLVS---EEGIWIIDFPQSVEVGEEGWREI-------LERDVRNIITYFSRTYRT  268 (282)
T ss_dssp             CSCCSTTSEEEE---TTEEEECCCTTCEETTSTTHHHH-------HHHHHHHHHHHHHHHHCC
T ss_pred             eCCCCHHHEEEE---CCcEEEEECCCCeECCCCCHHHH-------HHHHHHHHHHHHHHhcCC
Confidence            999999999997   78999999999998876544332       345777777777 45564

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.62  E-value=1.6e-15  Score=169.96  Aligned_cols=179  Identities=14%  Similarity=0.162  Sum_probs=126.2

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||+|+||.||+|.++|+.||||+.+++...                                            -+|.
T Consensus       199 ~~lG~G~fg~V~~~~~~~~~vavK~~~~~~~~--------------------------------------------~~~~  234 (450)
T 1k9a_A          199 QTIGKGEFGDVMLGDYRGNKVAVKCIKNDATA--------------------------------------------QAFL  234 (450)
T ss_dssp             EEEEECSSEEEEEEEETTEEEEEEEESSCTTS--------------------------------------------HHHH
T ss_pred             eeecCcCCeeEEEEEecCCeEEEEEeCCchHH--------------------------------------------HHHH
Confidence            68999999999999999999999998543210                                            1355


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcC-CCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG-VDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g-~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      +|++.+.++    .+..-+.+-.++.+-....++||||++|++|.++....... ++...+...+.+  ..+..+|..|+
T Consensus       235 ~E~~~l~~l----~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i  310 (450)
T 1k9a_A          235 AEASVMTQL----RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNF  310 (450)
T ss_dssp             HHHHHHHTC----CCTTBCCEEEEEECTTSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHhc----cCCCEEEEEEEEEcCCCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            666655554    23222333333333334679999999999999976433222 355544444333  34788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|+||.||+++.  ++.++|+|||++.........         ......+++++....+..+...|++++...+.++
T Consensus       311 vHrDlkp~Nill~~--~~~~kl~DfG~a~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el  379 (450)
T 1k9a_A          311 VHRDLAARNVLVSE--DNVAKVSDFGLTKEASSTQDT---------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEI  379 (450)
T ss_dssp             ECSCCCGGGEEECT--TSCEEECCCTTCEECC---------------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHH
T ss_pred             eCCCCCHhhEEECC--CCCEEEeeCCCcccccccccC---------CCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHH
Confidence            99999999999985  889999999999876543211         1345678888888877777788999998877665


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       380 ~  380 (450)
T 1k9a_A          380 Y  380 (450)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.62  E-value=1.2e-15  Score=157.08  Aligned_cols=183  Identities=15%  Similarity=0.080  Sum_probs=127.3

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|++|.||+|+. ++..||||+.+++....                                           -++
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-------------------------------------------~~~   50 (268)
T 3sxs_A           14 KELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSE-------------------------------------------DEF   50 (268)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECBTTBCH-------------------------------------------HHH
T ss_pred             eeeccCCCceEEEEEecCceeEEEEEeccCCCcH-------------------------------------------HHH
Confidence            6899999999999998 67899999985432111                                           124


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      .+|++.+.++.     ++++.-..-+.......++||||++|++|.++.......++...+...+.+  ..+..+|..|+
T Consensus        51 ~~E~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  125 (268)
T 3sxs_A           51 FQEAQTMMKLS-----HPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQF  125 (268)
T ss_dssp             HHHHHHHHHCC-----CTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHHhCC-----CCCEeeEEEEEccCCceEEEEEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            45555555542     233322222223445679999999999999976544444666655554433  34788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|+||+||+++.  ++.++|+|||++...........     .-..+++.++++++...+..++..|++++...+.++
T Consensus       126 ~H~dikp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  198 (268)
T 3sxs_A          126 IHRDLAARNCLVDR--DLCVKVSDFGMTRYVLDDQYVSS-----VGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEV  198 (268)
T ss_dssp             EESSCSGGGEEECT--TCCEEECCTTCEEECCTTCEEEC-----CSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHH
T ss_pred             ecCCcCcceEEECC--CCCEEEccCccceecchhhhhcc-----cCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHH
Confidence            99999999999985  88999999999987755321100     011234557788888776777889999999877665


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       199 ~  199 (268)
T 3sxs_A          199 F  199 (268)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.62  E-value=1.9e-15  Score=156.50  Aligned_cols=186  Identities=14%  Similarity=0.096  Sum_probs=110.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+..+.....                                 .+..      -.
T Consensus        17 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~~~------~~   57 (278)
T 3cok_A           17 NLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYK---------------------------------AGMV------QR   57 (278)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------TTCH------HH
T ss_pred             eeecCCCceEEEEEEEccCCceEEEEEeehhhhhh---------------------------------hhHH------HH
Confidence            7899999999999998  69999999874321000                                 0000      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|+..+.++    . ++++.-..-+.......+++|||++|++|.++.......++...+...+.+  ..+..+|..|
T Consensus        58 ~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~  132 (278)
T 3cok_A           58 VQNEVKIHCQL----K-HPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHG  132 (278)
T ss_dssp             HHHHHHHHTTB----C-CTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCCeEeEEEEEccCCeEEEEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33444433332    2 233322222333456679999999999999876433334555555444433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  ++.++|+|||++..+........      ...+++.++++++..-+..++..|++++...+.+
T Consensus       133 i~H~dl~p~Nili~~--~~~~kl~dfg~~~~~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~  204 (278)
T 3cok_A          133 ILHRDLTLSNLLLTR--NMNIKIADFGLATQLKMPHEKHY------TLCGTPNYISPEIATRSAHGLESDVWSLGCMFYT  204 (278)
T ss_dssp             EECSSCCGGGEEECT--TCCEEECCCTTCEECC----------------------------------CTHHHHHHHHHHH
T ss_pred             eecCCCCHHHEEEcC--CCCEEEEeecceeeccCCCCcce------eccCCCCcCCcchhcCCCCCchhhHHHHHHHHHH
Confidence            999999999999985  88999999999998764432211      1235778888888877667778999999987766


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       205 l~  206 (278)
T 3cok_A          205 LL  206 (278)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.61  E-value=3.1e-16  Score=166.58  Aligned_cols=194  Identities=15%  Similarity=0.148  Sum_probs=128.7

Q ss_pred             hhhhccCc-ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004234          291 DVFERFDV-EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (766)
Q Consensus       291 eiF~~fd~-~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (766)
                      +....|+. ..||.|++|.||+|++ +|+.||||+..+......                                    
T Consensus        36 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~------------------------------------   79 (321)
T 2qkw_B           36 EATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGI------------------------------------   79 (321)
T ss_dssp             CCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHH------------------------------------
T ss_pred             HHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHH------------------------------------
Confidence            34445544 6899999999999999 699999998765422110                                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHHHH-
Q 004234          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYAVE-  444 (766)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---~g~d~~~la~~lv~-  444 (766)
                            -.+.+|++.+..+    . ++++.-..-+....+..++||||++|++|.++.....   ..++...+...+.+ 
T Consensus        80 ------~~~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i  148 (321)
T 2qkw_B           80 ------EEFETEIETLSFC----R-HPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGA  148 (321)
T ss_dssp             ------HHHHHHHHGGGSC----C-CTTBCCEEEECCCTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHhC----C-CCCEeeEEEEEcCCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHH
Confidence                  0233444433322    2 2333222222233566799999999999998653221   12444544444333 


Q ss_pred             -HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004234          445 -SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG  523 (766)
Q Consensus       445 -~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~  523 (766)
                       ..+..+|..|++|+|+||.||+++.  ++.++|+|||++...........    .....+++.++++++...+..++..
T Consensus       149 ~~~l~~lH~~~ivH~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~  222 (321)
T 2qkw_B          149 ARGLHYLHTRAIIHRDVKSINILLDE--NFVPKITDFGISKKGTELDQTHL----STVVKGTLGYIDPEYFIKGRLTEKS  222 (321)
T ss_dssp             HHHHHHHHHTTEECSCCCSTTEEECT--TCCEEECCCTTCEECSSSSCCCC----BCCCEEETTTCCHHHHHHCBCCTHH
T ss_pred             HHHHHHhcCCCeecCCCCHHHEEECC--CCCEEEeeccccccccccccccc----ccccCCCccccCHHHhcCCCCCccc
Confidence             3478899999999999999999985  88999999999987543211100    0112356677888888777778888


Q ss_pred             CHHHHHHHHHHHHH
Q 004234          524 DTTAVRRTAQFFLN  537 (766)
Q Consensus       524 D~~~l~~~i~~~l~  537 (766)
                      |++++...+.+++.
T Consensus       223 Di~slG~il~ell~  236 (321)
T 2qkw_B          223 DVYSFGVVLFEVLC  236 (321)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             chHhHHHHHHHHHh
Confidence            99999988776653

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.61  E-value=3e-16  Score=171.55  Aligned_cols=184  Identities=19%  Similarity=0.170  Sum_probs=126.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|++  +|+.||||+.++.....                                         ..-+
T Consensus       120 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------------~~~~  158 (377)
T 3cbl_A          120 EQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPD-----------------------------------------LKAK  158 (377)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHH-----------------------------------------HHTT
T ss_pred             eEeccCCCCeEEEEEEecCCeEEEEEEccccCCHH-----------------------------------------HHHH
Confidence            6899999999999999  58999999986543211                                         0113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      |.+|++.+.++    . +++  +++++.  ......++||||++|++|.++.......++...+...+.+  ..+..+|.
T Consensus       159 ~~~E~~~l~~l----~-hpn--iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~  231 (377)
T 3cbl_A          159 FLQEARILKQY----S-HPN--IVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLES  231 (377)
T ss_dssp             TTHHHHHHTTC----C-CTT--BCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----C-CCC--EEEEEEEEecCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45566555443    2 233  333332  3345679999999999999876544444566555554433  34788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      .|++|+|+||.||+++.  ++.++|+|||++...........    .+.......+++|+....+..+...|++++...+
T Consensus       232 ~~ivHrDlkp~Nil~~~--~~~~kl~DfG~s~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il  305 (377)
T 3cbl_A          232 KCCIHRDLAARNCLVTE--KNVLKISDFGMSREEADGVYAAS----GGLRQVPVKWTAPEALNYGRYSSESDVWSFGILL  305 (377)
T ss_dssp             TTEECSCCSGGGEEECT--TCCEEECCGGGCEECTTSEEECC----SSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHH
T ss_pred             CCcCCcccCHHHEEEcC--CCcEEECcCCCceecCCCceeec----CCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHH
Confidence            99999999999999985  88999999999987654311000    0001123457888888877777788999998877


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       306 ~el~  309 (377)
T 3cbl_A          306 WETF  309 (377)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.61  E-value=1.3e-15  Score=159.39  Aligned_cols=187  Identities=17%  Similarity=0.181  Sum_probs=121.3

Q ss_pred             ccccccceeEEEEEee------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.||+|++|.||+|++      +|+.||||+.+....+.                                         
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------------   54 (295)
T 3ugc_A           16 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEH-----------------------------------------   54 (295)
T ss_dssp             EEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHH-----------------------------------------
T ss_pred             heeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHH-----------------------------------------
Confidence            6899999999999984      58999999885432111                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~  448 (766)
                       .-+|.+|++.+.++.     ++++ .+-.++... ....++||||++|++|.++.......++...+...+.+  ..+.
T Consensus        55 -~~~~~~E~~~l~~l~-----h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~  128 (295)
T 3ugc_A           55 -LRDFEREIEILKSLQ-----HDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME  128 (295)
T ss_dssp             -HHHHHHHHHHHHTCC-----CTTBCCEEEEECHHHHTSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhCC-----CCCEeeEEEEEecCCCCceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHH
Confidence             013445555554442     2322 222222111 23468999999999999976544444565555544433  3478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      .+|..|++|+|+||+||+++.  ++.++|+|||++..++.......   ......+...+++++...-+..++..|++++
T Consensus       129 ~lH~~~ivH~Dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  203 (295)
T 3ugc_A          129 YLGTKRYIHRDLATRNILVEN--ENRVKIGDFGLTKVLPQDKEFFK---VKEPGESPIFWYAPESLTESKFSVASDVWSF  203 (295)
T ss_dssp             HHHHTTCCCSCCSGGGEEEEE--TTEEEECCCCSCC----------------CTTCGGGGCCHHHHHHCCCCHHHHHHHH
T ss_pred             HHhcCCcccCCCCHhhEEEcC--CCeEEEccCcccccccCCcceee---eccCCCCccceeCcHHhcCCCCChHHHHHHH
Confidence            899999999999999999987  89999999999998765432111   0111223445777887776667778899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       204 G~~l~~l~~  212 (295)
T 3ugc_A          204 GVVLYELFT  212 (295)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            988877764

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.61  E-value=1e-15  Score=163.14  Aligned_cols=186  Identities=17%  Similarity=0.085  Sum_probs=125.2

Q ss_pred             ccccccceeEEEEEeec-------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|++|.||+|+..       |+.||||+.++.....                                   .    
T Consensus        53 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~----   93 (343)
T 1luf_A           53 RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASAD-----------------------------------M----   93 (343)
T ss_dssp             EEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHH-----------------------------------H----
T ss_pred             eeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHH-----------------------------------H----
Confidence            68999999999999984       3899999986542211                                   0    


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------------
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------------  430 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------------  430 (766)
                        .-+|.+|++.+.++     .++++.-..-+.......++||||++|++|.++.....                     
T Consensus        94 --~~~~~~E~~~l~~l-----~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  166 (343)
T 1luf_A           94 --QADFQREAALMAEF-----DNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSP  166 (343)
T ss_dssp             --HHHHHHHHHHHHTC-----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC--------------------
T ss_pred             --HHHHHHHHHHHHhC-----CCCCEEEEEEEEccCCceEEEEecCCCCcHHHHHHHhCccccccccccccccccccccc
Confidence              11345566555544     23333222222234567799999999999998754311                     


Q ss_pred             --cCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCH
Q 004234          431 --LGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDA  506 (766)
Q Consensus       431 --~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~  506 (766)
                        ..++...+...+.+  ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .....++.
T Consensus       167 ~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~t~  240 (343)
T 1luf_A          167 GPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGE--NMVVKIADFGLSRNIYSADYYKA----DGNDAIPI  240 (343)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCCSCHHHHTGGGCBC--------CCBCG
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEECC--CCeEEEeecCCCcccccCccccc----cCCCcccc
Confidence              23444444433333  3478899999999999999999986  88999999999987654321110    11123456


Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          507 DKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       507 ~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      .++++++...+..++..|++++...+.+++
T Consensus       241 ~y~aPE~~~~~~~~~~~Di~slG~il~el~  270 (343)
T 1luf_A          241 RWMPPESIFYNRYTTESDVWAYGVVLWEIF  270 (343)
T ss_dssp             GGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             eecChhhhccCCcCcccccHHHHHHHHHHH
Confidence            788888887777777889999988776665

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.61  E-value=2.7e-15  Score=165.99  Aligned_cols=174  Identities=17%  Similarity=0.252  Sum_probs=115.0

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccch--HHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDL--FDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~--i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      .+||+|++|.||+|.. +|++||||+.|++....  +..+           ..+..  .....+|..+         ..+
T Consensus       101 ~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~-----------r~~~~--~~~~~~~~~~---------~rl  158 (397)
T 4gyi_A          101 SRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKAN-----------RDYLR--NRSTGSWMYL---------SRL  158 (397)
T ss_dssp             EEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC-------------CEECT--TSCHHHHHHH---------HHH
T ss_pred             CEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHH-----------HHHHH--hhccccHHHH---------HHH
Confidence            5899999999999998 79999999998875431  0000           00000  0000111111         122


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCc
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGF  455 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~Gf  455 (766)
                      .-..|.+|+.++..     ..+.+|.+|.  ..+.+|||||++|.++.++...    .+...+...++. .+..+|.+|+
T Consensus       159 ~A~kE~~nL~rL~~-----~gv~vp~p~~--~~~~~LVME~i~G~~L~~l~~~----~~~~~l~~qll~-~l~~lH~~gI  226 (397)
T 4gyi_A          159 AAIKEFAFMKALYE-----EGFPVPEPIA--QSRHTIVMSLVDALPMRQVSSV----PDPASLYADLIA-LILRLAKHGL  226 (397)
T ss_dssp             HHHHHHHHHHHHHH-----TTCSCCCEEE--EETTEEEEECCSCEEGGGCCCC----SCHHHHHHHHHH-HHHHHHHTTE
T ss_pred             HHHHHHHHHHHHHh-----cCCCCCeeee--ccCceEEEEecCCccHhhhccc----HHHHHHHHHHHH-HHHHHHHCCC
Confidence            33568889999865     3467888884  3567999999999998775322    245555555444 4677899999


Q ss_pred             cccCCCCCcEEEeecCCC----------cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGG----------RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g----------~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~  515 (766)
                      +|||+||.|||+++  +|          .+++|||+.+...+...-..|       +.+|...+..-+.+
T Consensus       227 VHrDLKp~NILl~~--dgd~~d~~~~~~~~~iID~~Q~V~~~hp~a~~~-------l~RDv~ni~~fF~k  287 (397)
T 4gyi_A          227 IHGDFNEFNILIRE--EKDAEDPSSITLTPIIIXFPQMVSMDHPNAEMY-------FDRDVQCIKRFFER  287 (397)
T ss_dssp             ECSCCSTTSEEEEE--EECSSCTTSEEEEEEECCCTTCEETTSTTHHHH-------HHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHEEEeC--CCCcccccccccceEEEEeCCcccCCCCChHHH-------HHHHHHHHHHHHHh
Confidence            99999999999986  33          489999998877654432222       34566666665543

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.61  E-value=2.9e-15  Score=162.37  Aligned_cols=187  Identities=16%  Similarity=0.104  Sum_probs=125.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                 .+...      .
T Consensus        15 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~------~   55 (345)
T 3a8x_A           15 RVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVND---------------------------------DEDID------W   55 (345)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCS---------------------------------HHHHH------H
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcc---------------------------------hHHHH------H
Confidence            6899999999999998  59999999985432111                                 00011      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|...+.++    .+++++.-..-+.......++||||++|++|.+.... ...++...+...+.+  ..+..+|..|
T Consensus        56 ~~~E~~~l~~~----~~hp~iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~~LH~~~  130 (345)
T 3a8x_A           56 VQTEKHVFEQA----SNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR-QRKLPEEHARFYSAEISLALNYLHERG  130 (345)
T ss_dssp             HHHHHHHHHHT----TTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhc----CCCCccCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22333333322    2334433222233345667999999999999886532 223454444433333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||+||+++.  +|.++|+|||++.........      .....+++.++++++......+...|++++...+.+
T Consensus       131 ivHrDlkp~NIll~~--~g~~kL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  202 (345)
T 3a8x_A          131 IIYRDLKLDNVLLDS--EGHIKLTDYGMCKEGLRPGDT------TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFE  202 (345)
T ss_dssp             CBCCCCCGGGEEECT--TSCEEECCGGGCBCSCCTTCC------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHH
T ss_pred             ceecCCCHHHEEECC--CCCEEEEeccccccccCCCCc------ccccCCCccccCccccCCCCCChHHhHHHHHHHHHH
Confidence            999999999999985  899999999999864321110      112346888999999877666777899999988777


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       203 ll~  205 (345)
T 3a8x_A          203 MMA  205 (345)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            664

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.61  E-value=2.4e-15  Score=159.57  Aligned_cols=184  Identities=18%  Similarity=0.174  Sum_probs=120.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|++  +|+.||||+.........                                        .+..
T Consensus        63 ~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~----------------------------------------~~~~  102 (311)
T 3p1a_A           63 SRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPK----------------------------------------DRAR  102 (311)
T ss_dssp             EEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHH----------------------------------------HHHH
T ss_pred             heeccCCCeEEEEEEECCCCeEEEEEEecccccChH----------------------------------------HHHH
Confidence            6899999999999999  599999998754322110                                        0112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +..|...+.+.   . .++++.-..-+....+..+|||||+.| ++.+........++...+...+.+  ..+..+|..|
T Consensus       103 ~~~e~~~~~~~---~-~h~~iv~l~~~~~~~~~~~lv~e~~~~-~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~  177 (311)
T 3p1a_A          103 KLAEVGSHEKV---G-QHPCCVRLEQAWEEGGILYLQTELCGP-SLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQG  177 (311)
T ss_dssp             HHHHHHHHHHH---C-CCTTBCCEEEEEEETTEEEEEEECCCC-BHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHh---c-CCCcEEEEEEEEEeCCEEEEEEeccCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22233322222   1 233333222233445678999999954 676654433334565555444433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||+||+++.  ++.++|+|||++..++.....       ....+++.++++++.. |..++..|++++...+.+
T Consensus       178 ivH~Dikp~NIll~~--~~~~kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~e  247 (311)
T 3p1a_A          178 LVHLDVKPANIFLGP--RGRCKLGDFGLLVELGTAGAG-------EVQEGDPRYMAPELLQ-GSYGTAADVFSLGLTILE  247 (311)
T ss_dssp             EECCCCSGGGEEECG--GGCEEECCCTTCEECC-------------CCCCCGGGCCGGGGG-TCCSTHHHHHHHHHHHHH
T ss_pred             EecCCCCHHHEEECC--CCCEEEccceeeeecccCCCC-------cccCCCccccCHhHhc-CCCCchhhHHHHHHHHHH
Confidence            999999999999986  889999999999887654321       1234677888888765 456777899999987766


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       248 l~~  250 (311)
T 3p1a_A          248 VAC  250 (311)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.61  E-value=1.2e-15  Score=166.50  Aligned_cols=187  Identities=14%  Similarity=0.086  Sum_probs=124.5

Q ss_pred             ccccccceeEEEEEee---------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL---------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l---------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      +.||.|+||+||+|++         +|..||||+.++...+.                                      
T Consensus        87 ~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~--------------------------------------  128 (370)
T 2psq_A           87 KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK--------------------------------------  128 (370)
T ss_dssp             EEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHH--------------------------------------
T ss_pred             eEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHH--------------------------------------
Confidence            6899999999999986         24679999986542211                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCC
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVD  434 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d  434 (766)
                         ..-++.+|+..+.++.    .+++|.-..-+.......++||||++|++|.++.....               ..++
T Consensus       129 ---~~~~~~~E~~~l~~l~----~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~  201 (370)
T 2psq_A          129 ---DLSDLVSEMEMMKMIG----KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMT  201 (370)
T ss_dssp             ---HHHHHHHHHHHHHHSC----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCC
T ss_pred             ---HHHHHHHHHHHHHHhc----CCCCEeeEEEEEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCC
Confidence               0013445555554441    23333222222233456799999999999998754321               1234


Q ss_pred             HHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004234          435 RKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  512 (766)
Q Consensus       435 ~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~  512 (766)
                      ...+...+.+  ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .....+.+.+++++
T Consensus       202 ~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~~~----~~~~~~t~~y~aPE  275 (370)
T 2psq_A          202 FKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTE--NNVMKIADFGLARDINNIDYYKK----TTNGRLPVKWMAPE  275 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECT--TCCEEECCCSSCEETTCCCTTCT----TTTTTSCGGGCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeccccchhhEEECC--CCCEEEccccCCcccCcccceec----ccCCCcccceECHh
Confidence            4444444333  3478899999999999999999985  89999999999987754321100    01123456788888


Q ss_pred             HHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          513 MVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       513 l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +..-+..++..|++++...+.+++
T Consensus       276 ~~~~~~~~~~~DvwslG~il~ell  299 (370)
T 2psq_A          276 ALFDRVYTHQSDVWSFGVLMWEIF  299 (370)
T ss_dssp             HHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCcHHHHHHHHHHHHHHH
Confidence            887776777789999988776654

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.60  E-value=1.2e-15  Score=171.15  Aligned_cols=188  Identities=17%  Similarity=0.178  Sum_probs=126.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|++  +|+.||||+.+...                .....                       ..-.
T Consensus        80 ~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~----------------~~~~~-----------------------~~~~  120 (437)
T 4aw2_A           80 KVIGRGAFGEVAVVKLKNADKVFAMKILNKWE----------------MLKRA-----------------------ETAC  120 (437)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEHHH----------------HHHTT-----------------------TTCC
T ss_pred             EEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHH----------------hhhHH-----------------------HHHH
Confidence            6899999999999999  48999999984210                00000                       0012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +..|...+..+     ++++|.-..-+.......+|||||++|++|.++.......++...+...+.+  ..+..+|..|
T Consensus       121 ~~~E~~il~~~-----~hp~Iv~l~~~~~~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~g  195 (437)
T 4aw2_A          121 FREERDVLVNG-----DSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLH  195 (437)
T ss_dssp             HHHHHHHHHHS-----CTTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC-----CCCCEEEEEEEEeeCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            33444444332     2333322222233456679999999999999876432334555544433333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCCCCCCCCHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGVLVPTGDTTAVR  529 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~-----lG~~~~~~D~~~l~  529 (766)
                      ++|+|+||+|||++.  +|.++|+|||++..+.......     .....+++.++++++..     .+..++..|++++.
T Consensus       196 iiHrDLKp~NILl~~--~g~vkL~DFGla~~~~~~~~~~-----~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlG  268 (437)
T 4aw2_A          196 YVHRDIKPDNILMDM--NGHIRLADFGSCLKLMEDGTVQ-----SSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLG  268 (437)
T ss_dssp             EECCCCSGGGEEECT--TSCEEECCCTTCEECCTTSCEE-----CCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHH
T ss_pred             eEecccCHHHeeEcC--CCCEEEcchhhhhhcccCCCcc-----cccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHH
Confidence            999999999999985  8999999999998775432210     11134788899999886     34567778999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       269 vil~ellt  276 (437)
T 4aw2_A          269 VCMYEMLY  276 (437)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88877664

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.60  E-value=3.1e-15  Score=154.08  Aligned_cols=186  Identities=19%  Similarity=0.184  Sum_probs=116.8

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||+|++|.||+|++.|+.||||+.+........                                +..+      .+.
T Consensus        13 ~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~--------------------------------~~~~------~~~   54 (271)
T 3dtc_A           13 EIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDIS--------------------------------QTIE------NVR   54 (271)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEC------------------------------------------CHH------HHH
T ss_pred             eeeccCCCeEEEEEEEcCCeEEEEEEecCCcccHH--------------------------------HHHH------HHH
Confidence            68999999999999999999999998543221100                                0001      234


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC--
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG--  454 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G--  454 (766)
                      +|+..+..+    . ++++.-..-+.......+++|||++|++|.++..  ...++...+...+.+  ..+..+|..|  
T Consensus        55 ~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~i~~~l~~~l~~lH~~~~~  127 (271)
T 3dtc_A           55 QEAKLFAML----K-HPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLS--GKRIPPDILVNWAVQIARGMNYLHDEAIV  127 (271)
T ss_dssp             HHHHHHHHC----C-CTTBCCEEEEECCC--CEEEEECCTTEEHHHHHT--SSCCCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHhc----C-CCCEeeEEEEEecCCceEEEEEcCCCCCHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            454444443    2 3333322222333456799999999999988753  334555555444433  3478899999  


Q ss_pred             -ccccCCCCCcEEEeec------CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004234          455 -FFHADPHPGNIAVDDV------NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (766)
Q Consensus       455 -ffHaDpHPGNILV~~~------~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~  527 (766)
                       ++|+|+||+||+++..      .++.++|+|||++..+......        ...+++.+++++....+..++..|+++
T Consensus       128 ~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Di~s  199 (271)
T 3dtc_A          128 PIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKM--------SAAGAYAWMAPEVIRASMFSKGSDVWS  199 (271)
T ss_dssp             CCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC---------------------CCGGGSCHHHHHHCCCSHHHHHHH
T ss_pred             ceeecCCchHHEEEecccccccccCcceEEccCCccccccccccc--------CCCCccceeCHHHhccCCCCchhhHHH
Confidence             8999999999999741      1578999999999877654332        124677888888887777777789999


Q ss_pred             HHHHHHHHHH
Q 004234          528 VRRTAQFFLN  537 (766)
Q Consensus       528 l~~~i~~~l~  537 (766)
                      +...+.+++.
T Consensus       200 lG~~l~~l~~  209 (271)
T 3dtc_A          200 YGVLLWELLT  209 (271)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9887766553

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.60  E-value=3.4e-15  Score=153.16  Aligned_cols=183  Identities=13%  Similarity=0.061  Sum_probs=127.0

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|++|.||+|+. +++.||||+.++.....                                           -++
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~-------------------------------------------~~~   50 (267)
T 3t9t_A           14 QEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-------------------------------------------EDF   50 (267)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECTTTBCH-------------------------------------------HHH
T ss_pred             eEecCCCceeEEEEEecCCCeEEEEEccccCCCH-------------------------------------------HHH
Confidence            6899999999999999 78999999985432110                                           123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      .+|.+.+.++     .++++.-..-+.......+++|||++|++|.++.......++...+...+.+  ..+..+|..|+
T Consensus        51 ~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  125 (267)
T 3t9t_A           51 IEEAEVMMKL-----SHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACV  125 (267)
T ss_dssp             HHHHHHHHTC-----CCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhC-----CCCCEeeEEEEEccCCCeEEEEeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            4455544443     2333322222233456779999999999999976543334565555544433  34788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|++|.||+++.  ++.++|+|||++..........     .....++..+++++....+..++..|++++...+.++
T Consensus       126 ~H~dl~p~Nili~~--~~~~kl~dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  198 (267)
T 3t9t_A          126 IHRDLAARNCLVGE--NQVIKVSDFGMTRFVLDDQYTS-----STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEV  198 (267)
T ss_dssp             CCSSCCGGGEEECG--GGCEEECCTTGGGGBCCHHHHS-----TTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCchheEEECC--CCCEEEcccccccccccccccc-----cccccccccccChhhhcCCCccchhchhhhHHHHHHH
Confidence            99999999999986  7899999999998876532211     1112344567888888776667778999998776665


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       199 ~  199 (267)
T 3t9t_A          199 F  199 (267)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.60  E-value=3.3e-15  Score=158.19  Aligned_cols=177  Identities=16%  Similarity=0.207  Sum_probs=120.3

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||+|++|.||+|+++|+.||||+......                                            .-.|.
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~--------------------------------------------~~~~~   49 (307)
T 2eva_A           14 EVVGRGAFGVVCKAKWRAKDVAIKQIESESE--------------------------------------------RKAFI   49 (307)
T ss_dssp             EEEECCSSSEEEEEEETTEEEEEEECSSTTH--------------------------------------------HHHHH
T ss_pred             eEeecCCCceEEEEEECCeeEEEEEecChhH--------------------------------------------HHHHH
Confidence            6899999999999999999999998732110                                            01344


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh--cCCCHHHHHHHHHH--HHHHHHHh--
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE--LGVDRKRLGRYAVE--SYLEQILS--  452 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~--~g~d~~~la~~lv~--~~l~qI~~--  452 (766)
                      +|++.+.++.     ++  .+.+++....+..++||||++|++|.++.....  ...+...+...+.+  ..+..+|.  
T Consensus        50 ~E~~~l~~l~-----hp--~iv~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~  122 (307)
T 2eva_A           50 VELRQLSRVN-----HP--NIVKLYGACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQ  122 (307)
T ss_dssp             HHHHHHHHCC-----CT--TBCCEEEBCTTTTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHhcCC-----CC--CcCeEEEEEcCCcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCC
Confidence            5555555442     23  345556555677899999999999998754221  12344444443332  34777888  


Q ss_pred             -CCccccCCCCCcEEEeecCCCc-EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          453 -HGFFHADPHPGNIAVDDVNGGR-LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       453 -~GffHaDpHPGNILV~~~~~g~-l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                       .|++|+|+||.||+++.  ++. ++|+|||++..+......         ..++..++++++...+..++..|++++..
T Consensus       123 ~~~ivH~dlkp~NIll~~--~~~~~kl~Dfg~~~~~~~~~~~---------~~gt~~y~aPE~~~~~~~~~~~Di~slG~  191 (307)
T 2eva_A          123 PKALIHRDLKPPNLLLVA--GGTVLKICDFGTACDIQTHMTN---------NKGSAAWMAPEVFEGSNYSEKCDVFSWGI  191 (307)
T ss_dssp             SSCCCCCCCSGGGEEEET--TTTEEEECCCCC---------------------CCTTSSCHHHHTCCCCCTHHHHHHHHH
T ss_pred             CCCeecCCCChhHEEEeC--CCCEEEEccccccccccccccc---------CCCCCceEChhhhCCCCCCcHHHHHHHHH
Confidence             89999999999999985  565 899999999876543221         23677888999887777777889999998


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       192 il~el~~  198 (307)
T 2eva_A          192 ILWEVIT  198 (307)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776653

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.60  E-value=3.6e-15  Score=155.08  Aligned_cols=183  Identities=16%  Similarity=0.151  Sum_probs=115.6

Q ss_pred             ccccccceeEEEEEee-c----CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-K----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~----G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|++|+||+|+. .    +..||||+.+......                                   ..     
T Consensus        21 ~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~-----   60 (281)
T 1mp8_A           21 RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDS-----------------------------------VR-----   60 (281)
T ss_dssp             EEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHH-----------------------------------HH-----
T ss_pred             eEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHH-----------------------------------HH-----
Confidence            6899999999999998 2    4679999874321111                                   01     


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                       -.+.+|+..+.++    . +++  +++++.- ..+..++||||++|++|.++.......++...+...+.+  ..+..+
T Consensus        61 -~~~~~e~~~l~~l----~-h~~--iv~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~l  132 (281)
T 1mp8_A           61 -EKFLQEALTMRQF----D-HPH--IVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYL  132 (281)
T ss_dssp             -HHHHHHHHHHHTC----C-CTT--BCCEEEEECSSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhC----C-CCc--cceEEEEEccCccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence             1344555555443    2 232  2333322 235679999999999999976544444666655544433  347889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|+||+||+++.  ++.++|+|||++..+.......     ......++.+++++....+..++..|++++..
T Consensus       133 H~~~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  205 (281)
T 1mp8_A          133 ESKRFVHRDIAARNVLVSS--NDCVKLGDFGLSRYMEDSTYYK-----ASKGKLPIKWMAPESINFRRFTSASDVWMFGV  205 (281)
T ss_dssp             HHTTCCCSCCSGGGEEEEE--TTEEEECC------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHH
T ss_pred             HhCCeecccccHHHEEECC--CCCEEECccccccccCcccccc-----cccCCCcccccChhhcccCCCCCccCchHHHH
Confidence            9999999999999999986  8999999999998876533211     11123455688888887776677789999987


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       206 ~l~ell  211 (281)
T 1mp8_A          206 CMWEIL  211 (281)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.60  E-value=2.2e-15  Score=163.05  Aligned_cols=182  Identities=13%  Similarity=0.090  Sum_probs=115.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+.....                                            -.
T Consensus        59 ~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--------------------------------------------~~   94 (349)
T 2w4o_A           59 SELGRGATSIVYRCKQKGTQKPYALKVLKKTVDK--------------------------------------------KI   94 (349)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEC--------------------------------------------------
T ss_pred             eEEeeCCCEEEEEEEECCCCcEEEEEEeccchhH--------------------------------------------HH
Confidence            6899999999999999  4889999998542110                                            01


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|+..+.++    . +++|.-..-+.......++||||++|++|.+.... ...++...+...+.+  ..+..+|..|
T Consensus        95 ~~~E~~~l~~l----~-h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~~L~~LH~~~  168 (349)
T 2w4o_A           95 VRTEIGVLLRL----S-HPNIIKLKEIFETPTEISLVLELVTGGELFDRIVE-KGYYSERDAADAVKQILEAVAYLHENG  168 (349)
T ss_dssp             ----CHHHHHC----C-CTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTT-CSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCCCcceeeeEecCCeEEEEEEeCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            23344444443    2 23332222233445667999999999999886532 223455544444333  3478899999


Q ss_pred             ccccCCCCCcEEEee-cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~-~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||+||+++. .+++.++|+|||++..+.....       .....+++.++++++..-+..++..|++++...+.
T Consensus       169 ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~  241 (349)
T 2w4o_A          169 IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVL-------MKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITY  241 (349)
T ss_dssp             CCCCCCCGGGEEESSSSTTCCEEECCCC-----------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHH
T ss_pred             eEecCCCcccEEEecCCCCCCEEEccCccccccCcccc-------cccccCCCCccCHHHhcCCCCCcccchHHHHHHHH
Confidence            999999999999973 2368899999999987754321       11234677889999888777778889999998777


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       242 ell~  245 (349)
T 2w4o_A          242 ILLC  245 (349)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6653

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.60  E-value=1.5e-15  Score=165.04  Aligned_cols=187  Identities=15%  Similarity=0.143  Sum_probs=127.4

Q ss_pred             ccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      .|+. +.||+|++|.||+|+.  +|+.||||+.++....                ..   .      .            
T Consensus        42 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~----------------~~---~------~------------   84 (350)
T 1rdq_E           42 QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVV----------------KL---K------Q------------   84 (350)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHH----------------HT---T------C------------
T ss_pred             HCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhc----------------cH---H------H------------
Confidence            4443 7899999999999998  5999999997431100                00   0      0            


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                        .-.+.+|.+.+..+     +++++.-..-+.......+|||||++|++|.++... ...++...+...+.+  ..+..
T Consensus        85 --~~~~~~E~~~l~~l-----~hp~iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~  156 (350)
T 1rdq_E           85 --IEHTLNEKRILQAV-----NFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEY  156 (350)
T ss_dssp             --HHHHHHHHHHHTTC-----CCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HCCCCHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHhC-----CCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHH
Confidence              01233344433322     233332222222334567999999999999886542 223455444443333  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|+|+||+||+++.  +|.++|+|||++..+.....         ...+++.++++++......++..|++++.
T Consensus       157 LH~~~ivHrDlkp~NIll~~--~g~~kL~DFg~a~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~~DiwslG  225 (350)
T 1rdq_E          157 LHSLDLIYRDLKPENLLIDQ--QGYIQVTDFGFAKRVKGRTW---------TLCGTPEALAPEIILSKGYNKAVDWWALG  225 (350)
T ss_dssp             HHHTTEECCCCSGGGEEECT--TSCEEECCCTTCEECSSCBC---------CCEECGGGCCHHHHTTCCBCTHHHHHHHH
T ss_pred             HHHCCcccccCccceEEECC--CCCEEEcccccceeccCCcc---------cccCCccccCHHHhcCCCCCCcCCEeccc
Confidence            99999999999999999985  89999999999998765421         13468889999998776667788999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       226 ~il~ell~  233 (350)
T 1rdq_E          226 VLIYEMAA  233 (350)
T ss_dssp             HHHHHHHH
T ss_pred             HhHhHHhh
Confidence            88776653

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.60  E-value=5.6e-15  Score=153.42  Aligned_cols=183  Identities=15%  Similarity=0.093  Sum_probs=124.0

Q ss_pred             ccccccceeEEEEEeec-----CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-----G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|++|+||+|++.     +..||||+.++.....                                         .
T Consensus        18 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------------~   56 (281)
T 3cc6_A           18 RILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLD-----------------------------------------N   56 (281)
T ss_dssp             EEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHH-----------------------------------------H
T ss_pred             EEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCch-----------------------------------------H
Confidence            78999999999999972     3469999885542111                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      .-.|.+|++.+.++.     ++++ .+-.++  .....+++|||++|++|.++.......++...+...+.+  ..+..+
T Consensus        57 ~~~~~~E~~~l~~l~-----h~~i~~~~~~~--~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~l  129 (281)
T 3cc6_A           57 KEKFMSEAVIMKNLD-----HPHIVKLIGII--EEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYL  129 (281)
T ss_dssp             HHHHHHHHHHHHHHC-----CTTBCCEEEEE--CSSSCEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-----CCCcceEEEEE--cCCCCEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHH
Confidence            113455666666552     2332 222222  234569999999999999976544444565555544333  347889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|+||+||+++.  ++.++|+|||++..+.......     ......+..+++++....+..++..|++++..
T Consensus       130 H~~~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  202 (281)
T 3cc6_A          130 ESINCVHRDIAVRNILVAS--PECVKLGDFGLSRYIEDEDYYK-----ASVTRLPIKWMSPESINFRRFTTASDVWMFAV  202 (281)
T ss_dssp             HHTTCCCCCCSGGGEEEEE--TTEEEECCCCGGGCC--------------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHH
T ss_pred             HHCCcccCCCccceEEECC--CCcEEeCccCCCcccccccccc-----cccCCCCcceeCchhhccCCCCchhccHHHHH
Confidence            9999999999999999986  8899999999998876543211     12223456788888887776777789999988


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       203 il~~ll  208 (281)
T 3cc6_A          203 CMWEIL  208 (281)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776655

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.60  E-value=1.1e-15  Score=165.23  Aligned_cols=186  Identities=15%  Similarity=0.119  Sum_probs=124.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.+.....                ..                 +      ..-.
T Consensus        11 ~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~----------------~~-----------------~------~~~~   51 (337)
T 1o6l_A           11 KLLGKGTFGKVILVREKATGRYYAMKILRKEVII----------------AK-----------------D------EVAH   51 (337)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH----------------HT-----------------T------CHHH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhh----------------hh-----------------h------HHHH
Confidence            6899999999999998  5999999998432100                00                 0      0012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~~G  454 (766)
                      +.+|.+.+..    + .++++.-..-+.......++||||++|++|.+.... ...++...+...+.  -..+..+|..|
T Consensus        52 ~~~E~~~l~~----l-~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~  125 (337)
T 1o6l_A           52 TVTESRVLQN----T-RHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSR-ERVFTEERARFYGAEIVSALEYLHSRD  125 (337)
T ss_dssp             HHHHHHHHHS----C-CCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHh----C-CCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            3344444433    2 234333222223344667999999999999876532 22345444443333  33478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  +|.++|+|||++.........      .....+++.++++++..-+..+...|++++...+.+
T Consensus       126 ivHrDlkp~NIll~~--~g~vkL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  197 (337)
T 1o6l_A          126 VVYRDIKLENLMLDK--DGHIKITDFGLCKEGISDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE  197 (337)
T ss_dssp             CBCCCCCGGGEEECT--TSCEEECCCTTCBCSCCTTCC------BCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHH
T ss_pred             eecCcCCHHHEEECC--CCCEEEeeccchhhcccCCCc------ccccccChhhCChhhhcCCCCCchhhcccchhHHHH
Confidence            999999999999985  899999999999864322110      112346788899998876667788899999988777


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       198 ll~  200 (337)
T 1o6l_A          198 MMC  200 (337)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            653

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.60  E-value=1.9e-15  Score=167.55  Aligned_cols=191  Identities=15%  Similarity=0.116  Sum_probs=127.4

Q ss_pred             ccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      .|+. +.||.|++|.||+|+.  +|+.||||+.+......-                         ...        .  
T Consensus        53 ~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~-------------------------~~~--------~--   97 (396)
T 4dc2_A           53 DFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDD-------------------------EDI--------D--   97 (396)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC-----------------------------C--------C--
T ss_pred             HcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCH-------------------------HHH--------H--
Confidence            3443 6899999999999998  589999999854321110                         000        0  


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                          .+..|...+.++.    ++++|.-..-+....+..+|||||++|++|.+.... ...++...+...+.+  ..+..
T Consensus        98 ----~~~~E~~il~~~~----~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~~  168 (396)
T 4dc2_A           98 ----WVQTEKHVFEQAS----NHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR-QRKLPEEHARFYSAEISLALNY  168 (396)
T ss_dssp             ----HHHHHHHHHHHHT----TCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcC----CCCCcCeeEEEEEECCEEEEEEEcCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHH
Confidence                1223333333321    334433222223345667999999999999876532 233554444443333  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|+|+||.||+++.  +|.++|+|||++.........      .....+++.++++++......+...|++++.
T Consensus       169 LH~~givHrDLKp~NILl~~--~g~ikL~DFGla~~~~~~~~~------~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslG  240 (396)
T 4dc2_A          169 LHERGIIYRDLKLDNVLLDS--EGHIKLTDYGMCKEGLRPGDT------TSTFCGTPNYIAPEILRGEDYGFSVDWWALG  240 (396)
T ss_dssp             HHHTTCBCCCCCGGGEEECT--TSCEEECCCTTCBCCCCTTCC------BCCCCBCGGGCCHHHHTTCCBCTHHHHHHHH
T ss_pred             HHHCCEEeccCCHHHEEECC--CCCEEEeecceeeecccCCCc------cccccCCcccCCchhhcCCCCChHHHHHHHH
Confidence            99999999999999999986  899999999999863221110      1123578899999998877677788999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       241 vllyell~  248 (396)
T 4dc2_A          241 VLMFEMMA  248 (396)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88877664

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.60  E-value=4.9e-15  Score=154.01  Aligned_cols=179  Identities=12%  Similarity=0.078  Sum_probs=121.9

Q ss_pred             ccccccceeEEEEEee--cC-------eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KG-------EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G-------~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      +.||.|++|.||+|+.  +|       ..||+|+........                                      
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~--------------------------------------   55 (289)
T 4fvq_A           14 ESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNY--------------------------------------   55 (289)
T ss_dssp             EEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGG--------------------------------------
T ss_pred             eeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHH--------------------------------------
Confidence            6899999999999998  34       579999874321111                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHH
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l  447 (766)
                          .-.+.+|+..+.++    . ++++.-..-+.......++||||++|++|.++.......++...+...+.+  ..+
T Consensus        56 ----~~~~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L  126 (289)
T 4fvq_A           56 ----SESFFEAASMMSKL----S-HKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAM  126 (289)
T ss_dssp             ----HHHHHHHHHHHHTS----C-CTTBCCEEEEECCTTCCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhC----C-CCCEeEEEEEEEeCCCCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence                01244455544444    2 333322222223356679999999999999976544433565554444333  347


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCc--------EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CC
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGR--------LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GV  518 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~--------l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~  518 (766)
                      ..+|..|++|+|+||+||+++.  ++.        ++|+|||++....+...          ..++..++++++... +.
T Consensus       127 ~~LH~~~ivH~Dlkp~NIll~~--~~~~~~~~~~~~kl~Dfg~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~  194 (289)
T 4fvq_A          127 HFLEENTLIHGNVCAKNILLIR--EEDRKTGNPPFIKLSDPGISITVLPKDI----------LQERIPWVPPECIENPKN  194 (289)
T ss_dssp             HHHHHTTCCCCCCCGGGEEEEE--CCBGGGTBCCEEEECCCCSCTTTSCHHH----------HHHTTTTSCHHHHHCGGG
T ss_pred             HHHhhCCeECCCcCcceEEEec--CCcccccccceeeeccCcccccccCccc----------cCCcCcccCHHHhCCCCC
Confidence            8899999999999999999986  554        99999999987765432          123556778887765 55


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004234          519 LVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       519 ~~~~~D~~~l~~~i~~~l  536 (766)
                      .++..|++++...+.+++
T Consensus       195 ~~~~~DiwslG~il~el~  212 (289)
T 4fvq_A          195 LNLATDKWSFGTTLWEIC  212 (289)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHH
Confidence            666789999988776665

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.60  E-value=1.1e-15  Score=160.44  Aligned_cols=217  Identities=12%  Similarity=0.088  Sum_probs=135.9

Q ss_pred             hhCCCCCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHH
Q 004234          266 QDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEY  345 (766)
Q Consensus       266 qd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~  345 (766)
                      +...+.+++.++.++..     .+++...+...+.||+|++|.||+|+.+|+.||||+..+.....              
T Consensus         9 ~~~~~~~~~~~l~~~~~-----~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~--------------   69 (307)
T 2nru_A            9 DTRFHSFSFYELKNVTN-----NFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDIT--------------   69 (307)
T ss_dssp             --CCEECCHHHHHHHTT-----TTCCSBTTTTCCEEEECSSEEEEEEESSSCEEEEEEECCCTTSC--------------
T ss_pred             CCCCCcccHHHHHHHHc-----ccccccccccCCccccCCCeEEEEEEECCceEEEEEEecccCcc--------------
Confidence            44566777776655432     11111112233689999999999999999999999885432111              


Q ss_pred             HhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhh
Q 004234          346 LQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRI  425 (766)
Q Consensus       346 l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~  425 (766)
                                    .    .+..+      .+.+|++.+..+    . ++++.-..-+.......+++|||++|++|.++
T Consensus        70 --------------~----~~~~~------~~~~E~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~  120 (307)
T 2nru_A           70 --------------T----EELKQ------QFDQEIKVMAKC----Q-HENLVELLGFSSDGDDLCLVYVYMPNGSLLDR  120 (307)
T ss_dssp             --------------T----TTHHH------HHHHHHHHHHHC----C-CTTBCCEEEEECSSSSCEEEEECCTTCBHHHH
T ss_pred             --------------h----HHHHH------HHHHHHHHHHhc----C-CCCeEEEEEEEecCCceEEEEEecCCCcHHHH
Confidence                          0    00111      244455545444    2 33332222222334667999999999999986


Q ss_pred             hhhhh--cCCCHHHHHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHH
Q 004234          426 QSLDE--LGVDRKRLGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGI  501 (766)
Q Consensus       426 ~~l~~--~g~d~~~la~~lv--~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~  501 (766)
                      .....  ..++...+...+.  ...+..+|..|++|+|+||.||+++.  ++.++|+|||++...........    ...
T Consensus       121 l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~  194 (307)
T 2nru_A          121 LSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDE--AFTAKISDFGLARASEKFAQTVM----TSR  194 (307)
T ss_dssp             HHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECT--TCCEEECCCTTCEECCSCSSCEE----CSS
T ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcC--CCcEEEeeccccccccccccccc----ccc
Confidence            54222  2245444444332  23478899999999999999999985  88999999999887654221100    011


Q ss_pred             hhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          502 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       502 ~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      ..+++.+++++... |..++..|++++...+.+++.
T Consensus       195 ~~g~~~y~aPE~~~-~~~~~~~Dv~slG~il~~l~~  229 (307)
T 2nru_A          195 IVGTTAYMAPEALR-GEITPKSDIYSFGVVLLEIIT  229 (307)
T ss_dssp             CCSCGGGCCHHHHT-TEECTHHHHHHHHHHHHHHHH
T ss_pred             cCCCcCcCChHHhc-CCCCccchhHHHHHHHHHHHH
Confidence            23567777888764 445677899999887766654

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.60  E-value=1.8e-15  Score=162.25  Aligned_cols=181  Identities=17%  Similarity=0.183  Sum_probs=124.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                 .  .      .              .-.
T Consensus        12 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~-----------------~--~------~--------------~~~   52 (318)
T 1fot_A           12 RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVR-----------------L--K------Q--------------VEH   52 (318)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH-----------------T--T------C--------------HHH
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh-----------------h--h------H--------------HHH
Confidence            6899999999999998  59999999984321000                 0  0      0              001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~  452 (766)
                      +.+|...+..    + +++++  ++++.  ......++||||++|++|.++... ...++...+...+.  -..+..+|.
T Consensus        53 ~~~E~~~l~~----l-~hp~I--v~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~  124 (318)
T 1fot_A           53 TNDERLMLSI----V-THPFI--IRMWGTFQDAQQIFMIMDYIEGGELFSLLRK-SQRFPNPVAKFYAAEVCLALEYLHS  124 (318)
T ss_dssp             HHHHHHHHHS----C-CBTTB--CCEEEEEECSSEEEEEECCCCSCBHHHHHHH-TSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhh----C-CCCCC--ceEeEEEEeCCEEEEEEeCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            2233333322    2 22332  33332  334567999999999999987542 22344444333332  334788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      .|++|+|+||.||+++.  +|.++|+|||++..++....         ...+++.++++++...+..+...|++++...+
T Consensus       125 ~~ivHrDlkp~NIll~~--~g~~kL~Dfg~a~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il  193 (318)
T 1fot_A          125 KDIIYRDLKPENILLDK--NGHIKITDFGFAKYVPDVTY---------TLCGTPDYIAPEVVSTKPYNKSIDWWSFGILI  193 (318)
T ss_dssp             TTEECCCCCGGGEEECT--TSCEEECCCSSCEECSSCBC---------CCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHH
T ss_pred             CCccccCCChheEEEcC--CCCEEEeecCcceecCCccc---------cccCCccccCHhHhcCCCCCcccchhhhHHHH
Confidence            99999999999999985  89999999999988765321         13467889999998877777888999999887


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       194 ~ell~  198 (318)
T 1fot_A          194 YEMLA  198 (318)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77654

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.60  E-value=1.5e-15  Score=157.59  Aligned_cols=179  Identities=14%  Similarity=0.155  Sum_probs=115.7

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||+|++|.||+|+.+|+.||||+.++....                                            -++.
T Consensus        27 ~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~--------------------------------------------~~~~   62 (278)
T 1byg_A           27 QTIGKGEFGDVMLGDYRGNKVAVKCIKNDATA--------------------------------------------QAFL   62 (278)
T ss_dssp             EEEEECSSCEEEEEEETTEEEEEEECCCCC----------------------------------------------HHHH
T ss_pred             eEEecCCCceEEEEEEcCCEEEEEEecchhHH--------------------------------------------HHHH
Confidence            68999999999999999999999987532100                                            0233


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc-CCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~-g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      +|++.+.++    .+..-+.+-.++.+.....+++|||++|++|.++...... .++...+...+.+  ..+..+|..|+
T Consensus        63 ~E~~~l~~l----~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  138 (278)
T 1byg_A           63 AEASVMTQL----RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNF  138 (278)
T ss_dssp             HTHHHHTTC----CCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhC----CCCCEeeEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            444444333    2222233333333333467999999999999987543221 1344444443333  34788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|+||.||+++.  ++.++|+|||++...+.....         ...+..+++++....+..++..|++++...+.++
T Consensus       139 ~H~dlkp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  207 (278)
T 1byg_A          139 VHRDLAARNVLVSE--DNVAKVSDFGLTKEASSTQDT---------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEI  207 (278)
T ss_dssp             CCSCCSGGGEEECT--TSCEEECCCCC---------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             cccCCCcceEEEeC--CCcEEEeeccccccccccccC---------CCccccccCHHHhCCCCCCchhcHHHHHHHHHHH
Confidence            99999999999985  889999999998876543221         1345567788887766667778999998777665


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       208 ~  208 (278)
T 1byg_A          208 Y  208 (278)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.60  E-value=2.2e-15  Score=164.16  Aligned_cols=187  Identities=18%  Similarity=0.095  Sum_probs=124.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+.+.....                ..   .      .        ..      .
T Consensus        26 ~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~----------------~~---~------~--------~~------~   66 (353)
T 2i0e_A           26 MVLGKGSFGKVMLSERKGTDELYAVKILKKDVVI----------------QD---D------D--------VE------C   66 (353)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHH----------------HT---T------C--------HH------H
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhh----------------cc---h------H--------HH------H
Confidence            6899999999999999  4899999998432100                00   0      0        00      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +..|.+.+..    ..+++.+.-..-+.+.....+|||||++|++|.++... ...++...+...+.+  ..+..+|..|
T Consensus        67 ~~~E~~~l~~----~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~g  141 (353)
T 2i0e_A           67 TMVEKRVLAL----PGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQ-VGRFKEPHAVFYAAEIAIGLFFLQSKG  141 (353)
T ss_dssp             HHHHHHHHTC----TTCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHh----cCCCCEEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            2233332221    22334433323333344667999999999999986532 223454444443333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||+||+++.  +|.++|+|||++.........      .....+++.++++++...+..+...|++++...+.+
T Consensus       142 ivHrDlkp~NIll~~--~g~vkL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  213 (353)
T 2i0e_A          142 IIYRDLKLDNVMLDS--EGHIKIADFGMCKENIWDGVT------TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYE  213 (353)
T ss_dssp             CBCCCCCGGGEEECT--TSCEEECCCTTCBCCCCTTCC------BCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHH
T ss_pred             EEeccCCHHHEEEcC--CCcEEEEeCCcccccccCCcc------cccccCCccccChhhhcCCCcCCcccccchHHHHHH
Confidence            999999999999985  899999999999864322110      112346888999999887767778899999988777


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       214 ll~  216 (353)
T 2i0e_A          214 MLA  216 (353)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            653

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.59  E-value=1.4e-15  Score=169.50  Aligned_cols=188  Identities=18%  Similarity=0.179  Sum_probs=125.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|+.  +|+.||||+.+..-       .         ...                 .      ..-.
T Consensus        67 ~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~-------~---------~~~-----------------~------~~~~  107 (412)
T 2vd5_A           67 KVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWD-------M---------LKR-----------------G------EVSC  107 (412)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHH-------H---------HHH-----------------G------GGCC
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEeHHH-------h---------hhH-----------------H------HHHH
Confidence            6899999999999999  59999999984210       0         000                 0      0002


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +..|...+...     ++++|.-..-+.......+|||||++|++|.++.......++...+...+.+  ..+..+|..|
T Consensus       108 ~~~E~~il~~~-----~hp~Iv~l~~~~~~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~g  182 (412)
T 2vd5_A          108 FREERDVLVNG-----DRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLG  182 (412)
T ss_dssp             HHHHHHHHHHS-----CTTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhc-----CCCCeeeEEEEEeeCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33344433332     2333322222223345679999999999999876433234555444433333  4478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-------cCCCCCCCCHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-------MGVLVPTGDTTA  527 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~-------lG~~~~~~D~~~  527 (766)
                      ++|+|+||+||+++.  +|.++|+|||++..+.......     .....+++.++++++..       .+..+...|+++
T Consensus       183 iiHrDLKp~NILld~--~g~vkL~DFGla~~~~~~~~~~-----~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwS  255 (412)
T 2vd5_A          183 YVHRDIKPDNILLDR--CGHIRLADFGSCLKLRADGTVR-----SLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWA  255 (412)
T ss_dssp             EECCCCSGGGEEECT--TSCEEECCCTTCEECCTTSCEE-----CSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHH
T ss_pred             eeecccCHHHeeecC--CCCEEEeechhheeccCCCccc-----cceeccccCcCCHHHHhhcccCcCCCCCChHHhhhH
Confidence            999999999999985  8999999999998876532110     01134788899999887       244567789999


Q ss_pred             HHHHHHHHHH
Q 004234          528 VRRTAQFFLN  537 (766)
Q Consensus       528 l~~~i~~~l~  537 (766)
                      +...+.+++.
T Consensus       256 lGvilyellt  265 (412)
T 2vd5_A          256 LGVFAYEMFY  265 (412)
T ss_dssp             HHHHHHHHHH
T ss_pred             HhHHHHHHHh
Confidence            9988777663

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.59  E-value=4.5e-15  Score=158.93  Aligned_cols=187  Identities=15%  Similarity=0.114  Sum_probs=119.1

Q ss_pred             ccccccceeEEEEEee-----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|++|.||+|+.     +|+.||||+.+......-.                                      ..
T Consensus        23 ~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~--------------------------------------~~   64 (327)
T 3a62_A           23 RVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNA--------------------------------------KD   64 (327)
T ss_dssp             EEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC----------------------------------------------
T ss_pred             EEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhh--------------------------------------hH
Confidence            6899999999999987     4899999998654211000                                      00


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      .-.+.+|...+..+    . +++|.-..-+.......++||||++|++|.+.... ...++...+...+.+  ..+..+|
T Consensus        65 ~~~~~~E~~~l~~l----~-hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~al~~lH  138 (327)
T 3a62_A           65 TAHTKAERNILEEV----K-HPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLER-EGIFMEDTACFYLAEISMALGHLH  138 (327)
T ss_dssp             ------HHHHHHHC----C-CTTBCCEEEEEECSSCEEEEEECCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----C-CCCccceeEEEEcCCEEEEEEeCCCCCcHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            11233444444443    2 33332222223345678999999999999886532 223444444333332  3478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|+||.||+++.  +|.++|+|||++........      ......+++.++++++...+..+...|++++...
T Consensus       139 ~~~ivH~Dlkp~Nill~~--~~~~kl~Dfg~~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~i  210 (327)
T 3a62_A          139 QKGIIYRDLKPENIMLNH--QGHVKLTDFGLCKESIHDGT------VTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGAL  210 (327)
T ss_dssp             HTTCCCCCCCTTTEEECT--TSCEEECCCSCC----------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHH
T ss_pred             hCCEEcccCCHHHeEECC--CCcEEEEeCCcccccccCCc------cccccCCCcCccCHhhCcCCCCCCcccchhHHHH
Confidence            999999999999999985  89999999999876543221      1122346778889998877666777899999987


Q ss_pred             HHHHHH
Q 004234          532 AQFFLN  537 (766)
Q Consensus       532 i~~~l~  537 (766)
                      +.+++.
T Consensus       211 l~el~~  216 (327)
T 3a62_A          211 MYDMLT  216 (327)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776653

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.59  E-value=3.1e-15  Score=167.74  Aligned_cols=182  Identities=17%  Similarity=0.183  Sum_probs=128.0

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|+||.||+|++ +++.||||+.+++....                                           -+|
T Consensus       194 ~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~-------------------------------------------~~~  230 (454)
T 1qcf_A          194 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSV-------------------------------------------EAF  230 (454)
T ss_dssp             EEEECCSSEEEEEEEETTTEEEEEEEECTTSBCH-------------------------------------------HHH
T ss_pred             EEcccCCceEEEEEEECCccEEEEEEecCCCccH-------------------------------------------HHH
Confidence            6899999999999999 68999999986542110                                           135


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      .+|++.+..+    .+..-+.+-.++  .....++||||++|++|.++.... ....+...+...+.+  ..+..+|..|
T Consensus       231 ~~E~~~l~~l----~h~~iv~l~~~~--~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~  304 (454)
T 1qcf_A          231 LAEANVMKTL----QHDKLVKLHAVV--TKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN  304 (454)
T ss_dssp             HHHHHHHTTC----CCTTBCCEEEEE--CSSSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhC----CCCCEeeEEEEE--eCCccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            5666655544    222223332332  245679999999999999976432 224555554444333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  ++.++|+|||++..+.......     .........+++++....+..+...|++++...+.+
T Consensus       305 ivHrDlkp~Nill~~--~~~~kl~DFG~a~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~e  377 (454)
T 1qcf_A          305 YIHRDLRAANILVSA--SLVCKIADFGLARVIEDNEYTA-----REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLME  377 (454)
T ss_dssp             CCCSSCSGGGEEECT--TCCEEECSTTGGGGBCCHHHHT-----TCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHEEECC--CCcEEEeeCCCceEcCCCceec-----cCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHH
Confidence            999999999999985  8899999999999886543211     111223567888999888877888899999887766


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       378 l~  379 (454)
T 1qcf_A          378 IV  379 (454)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.59  E-value=9.7e-16  Score=164.59  Aligned_cols=187  Identities=15%  Similarity=0.084  Sum_probs=123.8

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||.|++|.||+|++       +|+.||||+.+......                                        
T Consensus        28 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------------   67 (359)
T 3vhe_A           28 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS----------------------------------------   67 (359)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHH----------------------------------------
T ss_pred             eeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHH----------------------------------------
Confidence            6899999999999984       36899999985432211                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhc-------------------
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-------------------  431 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~-------------------  431 (766)
                       ..-.+.+|++.+.++.    ++++| .+-.++.+-....+++|||++|++|.++......                   
T Consensus        68 -~~~~~~~E~~~l~~l~----~hpniv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~  142 (359)
T 3vhe_A           68 -EHRALMSELKILIHIG----HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYV  142 (359)
T ss_dssp             -HHHHHHHHHHHHHHHC----CCTTBCCEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-------------
T ss_pred             -HHHHHHHHHHHHHhhc----CCcceeeeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccc
Confidence             0113455666555552    23332 2222232323447999999999999987543211                   


Q ss_pred             ----------------------------------------------CCCHHHHHHHHH--HHHHHHHHhCCccccCCCCC
Q 004234          432 ----------------------------------------------GVDRKRLGRYAV--ESYLEQILSHGFFHADPHPG  463 (766)
Q Consensus       432 ----------------------------------------------g~d~~~la~~lv--~~~l~qI~~~GffHaDpHPG  463 (766)
                                                                    .++...+...+.  ...+..+|..|++|+|+||.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~  222 (359)
T 3vhe_A          143 GAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAAR  222 (359)
T ss_dssp             -----------------------------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGG
T ss_pred             cccchhhhccccccCccccccccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChh
Confidence                                                          033333333332  23478899999999999999


Q ss_pred             cEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          464 NIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       464 NILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ||+++.  ++.++|+|||++..+........    .....+++.++++++...+..++..|++++...+.+++
T Consensus       223 NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell  289 (359)
T 3vhe_A          223 NILLSE--KNVVKICDFGLARDIYKDPDYVR----KGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIF  289 (359)
T ss_dssp             GEEECG--GGCEEECCCGGGSCTTSCTTCEE----C--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHT
T ss_pred             hEEEcC--CCcEEEEeccceeeecccccchh----ccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHH
Confidence            999986  78999999999987744321100    11223566788888887777777789999988776654

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.59  E-value=3.5e-15  Score=155.45  Aligned_cols=190  Identities=16%  Similarity=0.112  Sum_probs=127.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+........                                            +
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--------------------------------------------~   50 (296)
T 3uzp_A           15 RKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHP--------------------------------------------Q   50 (296)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCC--------------------------------------------H
T ss_pred             EEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchh--------------------------------------------H
Confidence            6899999999999997  69999999874432110                                            2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+..+.    +.+.+.....+.......+++|||+ |++|.++.......++...+...+.+  ..+..+|..|
T Consensus        51 ~~~e~~~l~~l~----~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~  125 (296)
T 3uzp_A           51 LHIESKIYKMMQ----GGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN  125 (296)
T ss_dssp             HHHHHHHHHHHT----TSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhh----cCCCCCccccccCCCCceEEEEEec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            344555454443    2233333333434456679999999 88999876543444666555544433  3478899999


Q ss_pred             ccccCCCCCcEEEee-cCCCcEEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       455 ffHaDpHPGNILV~~-~~~g~l~LiDFGlv~~L~~~~r~~l~~-l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      ++|+|+||.||+++. ..++.++|+|||++..+.......... .......+++.+++++...-+..++..|++++...+
T Consensus       126 ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il  205 (296)
T 3uzp_A          126 FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVL  205 (296)
T ss_dssp             EECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             eeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHH
Confidence            999999999999951 137889999999998776532210000 000112467778888888776667778999998877


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       206 ~~l~~  210 (296)
T 3uzp_A          206 MYFNL  210 (296)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            76653

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.59  E-value=2e-15  Score=160.31  Aligned_cols=194  Identities=14%  Similarity=0.169  Sum_probs=124.4

Q ss_pred             hhhhhccCc-ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004234          290 DDVFERFDV-EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (766)
Q Consensus       290 eeiF~~fd~-~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (766)
                      +.+...|.. +.||.|++|.||+|+. +|+.||||+.+......                                  ..
T Consensus        17 q~l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~   62 (311)
T 3niz_A           17 QGLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDE----------------------------------GI   62 (311)
T ss_dssp             ECSSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC----------------------------------------CH
T ss_pred             cchHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccc----------------------------------hh
Confidence            344455544 7899999999999999 79999999885431110                                  00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--H
Q 004234          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--S  445 (766)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~  445 (766)
                      .      -.+.+|++.+.++    . +++|.-..-+.......++||||++| .+.+.......+++...+...+.+  .
T Consensus        63 ~------~~~~~E~~~l~~l----~-hp~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~  130 (311)
T 3niz_A           63 P------STAIREISLLKEL----H-HPNIVSLIDVIHSERCLTLVFEFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLR  130 (311)
T ss_dssp             H------HHHHHHHHHHHHC----C-CTTBCCEEEEECCSSCEEEEEECCSE-EHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred             h------HHHHHHHHHHHHc----C-CCCEeeeeeEEccCCEEEEEEcCCCC-CHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence            1      1234455555444    2 23332222222334567999999997 555544333334555555444333  3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCC
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGD  524 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D  524 (766)
                      .+..+|..|++|+|+||+||+++.  ++.++|+|||++..++......      ....++..++++++..- ...+...|
T Consensus       131 ~l~~LH~~~ivH~Dikp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~D  202 (311)
T 3niz_A          131 GVAHCHQHRILHRDLKPQNLLINS--DGALKLADFGLARAFGIPVRSY------THEVVTLWYRAPDVLMGSKKYSTSVD  202 (311)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEECT--TCCEEECCCTTCEETTSCCC---------CCCCCCTTCCHHHHTTCCSCCTHHH
T ss_pred             HHHHHHHCCcccCCCchHhEEECC--CCCEEEccCcCceecCCCcccc------cCCcccCCcCCHHHhcCCCCCCchHH
Confidence            478899999999999999999985  8899999999998875432211      11234667788887753 34566779


Q ss_pred             HHHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFLN  537 (766)
Q Consensus       525 ~~~l~~~i~~~l~  537 (766)
                      ++++...+.+++.
T Consensus       203 iwslG~il~~ll~  215 (311)
T 3niz_A          203 IWSIGCIFAEMIT  215 (311)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh
Confidence            9999887776653

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.59  E-value=3.7e-15  Score=154.97  Aligned_cols=188  Identities=16%  Similarity=0.123  Sum_probs=127.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+........                                            +
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--------------------------------------------~   50 (296)
T 4hgt_A           15 RKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHP--------------------------------------------Q   50 (296)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEC---CC--------------------------------------------C
T ss_pred             eeecCCCCeEEEEEEEcCCCceEEEEeecccccch--------------------------------------------H
Confidence            6899999999999997  69999999853221100                                            2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|...+..+.    +.+.+.....+.......+++|||+ |++|.++.......++...+...+.+  ..+..+|..|
T Consensus        51 ~~~e~~~l~~l~----~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~  125 (296)
T 4hgt_A           51 LHIESKIYKMMQ----GGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN  125 (296)
T ss_dssp             HHHHHHHHHHHT----TSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc----CCCCCCeeeeecCCCCceEEEEEcc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            333444444432    3344444444445566779999999 88999876543445666655554433  3478899999


Q ss_pred             ccccCCCCCcEEE---eecCCCcEEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          455 FFHADPHPGNIAV---DDVNGGRLIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       455 ffHaDpHPGNILV---~~~~~g~l~LiDFGlv~~L~~~~r~~l~~-l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      ++|+|+||.||++   +.  ++.++|+|||++..+.......... .......+++.+++++....+..++..|++++..
T Consensus       126 ivH~Dlkp~NIl~~~~~~--~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~  203 (296)
T 4hgt_A          126 FIHRDVKPDNFLMGLGKK--GNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGY  203 (296)
T ss_dssp             EECSCCSGGGEEECCGGG--TTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHH
T ss_pred             eecCCCCHHHeeeeccCC--CCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHH
Confidence            9999999999999   43  7899999999998775532100000 0001124677888888887766667789999988


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       204 il~~l~~  210 (296)
T 4hgt_A          204 VLMYFNL  210 (296)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            7766553

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.59  E-value=3.7e-15  Score=154.61  Aligned_cols=184  Identities=20%  Similarity=0.165  Sum_probs=122.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+..+.....                                 .+.      +-.
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~~------~~~   55 (279)
T 3fdn_A           15 RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK---------------------------------AGV------EHQ   55 (279)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------HTC------HHH
T ss_pred             eEEecCCCeEEEEEEEccCCcEEEEEEEeccccch---------------------------------hhH------HHH
Confidence            6899999999999998  58899999874311000                                 000      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|+..+.++    . ++++.-..-+....+..+++|||++|++|.+.... ...++...+...+.+  ..+..+|..|
T Consensus        56 ~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~  129 (279)
T 3fdn_A           56 LRREVEIQSHL----R-HPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHSKR  129 (279)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHcC----C-CCCCcchhheEecCCEEEEEEecCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            34444433332    2 33332222233445667999999999999886532 233555544444333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||+||+++.  ++.++|+|||++.........        ...+++.++++++...+..++..|++++...+.+
T Consensus       130 i~H~dlkp~Nili~~--~~~~~l~Dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~  199 (279)
T 3fdn_A          130 VIHRDIKPENLLLGS--AGELKIADFGWSVHAPSSRRT--------DLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYE  199 (279)
T ss_dssp             CEECCCCGGGEEECT--TSCEEECSCCEESCC----------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred             EecccCChHhEEEcC--CCCEEEEeccccccCCccccc--------ccCCCCCccCHhHhccCCCCccchhHhHHHHHHH
Confidence            999999999999985  889999999998776554322        1246777888888887777778899999987766


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       200 l~~  202 (279)
T 3fdn_A          200 FLV  202 (279)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.59  E-value=1.9e-15  Score=161.30  Aligned_cols=188  Identities=14%  Similarity=0.124  Sum_probs=125.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+....-..                                            -+
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--------------------------------------------~~   50 (330)
T 2izr_A           15 KKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRA--------------------------------------------PQ   50 (330)
T ss_dssp             EECCC-CTTSEEEEEETTTTEEEEEEEEETTCSS--------------------------------------------CC
T ss_pred             EEeeccCCceEEEEEECCCCcEEEEEEeccccch--------------------------------------------HH
Confidence            6899999999999997  6999999987432110                                            02


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++.    +++++.-..-+.......++||||+ |++|.++.......++...+...+.+  ..+..+|..|
T Consensus        51 ~~~E~~~l~~l~----~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~  125 (330)
T 2izr_A           51 LHLEYRFYKQLG----SGDGIPQVYYFGPCGKYNAMVLELL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKN  125 (330)
T ss_dssp             HHHHHHHHHHHC----SCTTSCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhh----CCCCCCEEEEEEecCCccEEEEEeC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            344555555442    2333322222233355679999999 99999976543445666655554443  3488899999


Q ss_pred             ccccCCCCCcEEEeecCCCc-----EEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGR-----LIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~-----l~LiDFGlv~~L~~~~r~~l~~-l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      ++|+|+||.||+++.  ++.     ++|+|||++..+.......... .-.....+++.+++++...-+..++..|++++
T Consensus       126 iiHrDlkp~Nill~~--~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~sl  203 (330)
T 2izr_A          126 LIYRDVKPENFLIGR--PGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEAL  203 (330)
T ss_dssp             EECCCCCGGGEEECC--GGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHH
T ss_pred             eeccCCCHHHeeecc--CCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHH
Confidence            999999999999985  555     9999999998764432100000 00011346788888988877666777899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       204 G~il~ell~  212 (330)
T 2izr_A          204 GHMFMYFLR  212 (330)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            988777653

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.59  E-value=3.7e-15  Score=156.53  Aligned_cols=187  Identities=14%  Similarity=0.092  Sum_probs=127.0

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|++|.||+|++       +|+.||||+.++.....                                        
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------------   68 (313)
T 1t46_A           29 KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLT----------------------------------------   68 (313)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHH----------------------------------------
T ss_pred             HhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHH----------------------------------------
Confidence            6899999999999985       36899999986542211                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc-----------------CCC
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-----------------GVD  434 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~-----------------g~d  434 (766)
                       ..-.+.+|++.+.++.    .++++.-..-+....+..+++|||++|++|.++......                 .++
T Consensus        69 -~~~~~~~E~~~l~~l~----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  143 (313)
T 1t46_A           69 -EREALMSELKVLSYLG----NHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALD  143 (313)
T ss_dssp             -HHHHHHHHHHHHHHHC----CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCC
T ss_pred             -HHHHHHHHHHHHhhcc----cCCCeeeEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCC
Confidence             0113455666555552    234333222233445677999999999999987543221                 245


Q ss_pred             HHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004234          435 RKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  512 (766)
Q Consensus       435 ~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~  512 (766)
                      ...+...+.+  ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .+...+.+.+++++
T Consensus       144 ~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE  217 (313)
T 1t46_A          144 LEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTH--GRITKICDFGLARDIKNDSNYVV----KGNARLPVKWMAPE  217 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEET--TTEEEECCCGGGSCTTSCTTSEE----CSSSEECGGGCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEcC--CCCEEEcccccccccccccccee----ccCCCCcceeeChH
Confidence            5554444433  3478899999999999999999985  89999999999988765422100    01112345677888


Q ss_pred             HHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          513 MVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       513 l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ....+..++..|++++...+.+++
T Consensus       218 ~~~~~~~~~~~Di~slG~il~ell  241 (313)
T 1t46_A          218 SIFNCVYTFESDVWSYGIFLWELF  241 (313)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCChHHHHHHHHHHHHHHH
Confidence            777777777789999988776665

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.59  E-value=5.5e-15  Score=171.39  Aligned_cols=186  Identities=16%  Similarity=0.114  Sum_probs=129.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+.+....                ...                       ..+-.
T Consensus       190 ~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~----------------~~~-----------------------~~~~~  230 (576)
T 2acx_A          190 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRI----------------KKR-----------------------KGEAM  230 (576)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH----------------HHT-----------------------TCHHH
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhh----------------hhh-----------------------HHHHH
Confidence            6899999999999999  599999998732100                000                       01123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|.+.+..+     ++++|.-..-+.+.....+|||||++|++|.+..... ..+++...+...+.+  ..+..+|..
T Consensus       231 ~~~E~~iL~~l-----~hp~Iv~l~~~~~~~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~  305 (576)
T 2acx_A          231 ALNEKQILEKV-----NSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE  305 (576)
T ss_dssp             HHHHHHHHHHC-----CCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHc-----CCCCEeeEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            44555555544     2333322222223345679999999999998865322 223555555444433  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||+||+++.  +|.++|+|||++..+......       ....+++.++++++...+..+...|++++...+.
T Consensus       306 gIvHrDLKPeNILld~--~g~vKL~DFGla~~~~~~~~~-------~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvily  376 (576)
T 2acx_A          306 RIVYRDLKPENILLDD--HGHIRISDLGLAVHVPEGQTI-------KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLY  376 (576)
T ss_dssp             TEECCCCCGGGEEECT--TSCEEECCCTTCEECCTTCCE-------ECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHH
T ss_pred             CEeccCCchheEEEeC--CCCeEEEecccceecccCccc-------cccCCCccccCHHHHcCCCCCccchHHHHHHHHH
Confidence            9999999999999985  899999999999987654211       1124788899999988766777889999998887


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       377 eLlt  380 (576)
T 2acx_A          377 EMIA  380 (576)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7664

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.59  E-value=5e-15  Score=157.04  Aligned_cols=186  Identities=16%  Similarity=0.089  Sum_probs=123.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                           ..              -.
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------~~--------------~~   53 (319)
T 4euu_A           15 DILGQGATANVFRGRHKKTGDLFAIKVFNNISFLR---------------------------PV--------------DV   53 (319)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGS---------------------------CH--------------HH
T ss_pred             EEecCCCCeEEEEEEECCCCcEEEEEEeccccccc---------------------------hH--------------HH
Confidence            6799999999999999  49999999984321110                           00              02


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccC-CCeEEEEeecCCCChhhhhhhhhc--CCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYT-TPQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~s-t~~vLVMEyieG~~L~d~~~l~~~--g~d~~~la~~lv~--~~l~qI  450 (766)
                      +.+|++.+.++    .+ +++ .+-.++.... ...+|||||++|++|.++......  +++...+...+.+  ..+..+
T Consensus        54 ~~~E~~~l~~l----~h-~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~L  128 (319)
T 4euu_A           54 QMREFEVLKKL----NH-KNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHL  128 (319)
T ss_dssp             HHHHHHHHHHC----CC-TTBCCEEEEEECTTTCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CC-CCcceEEEEeecCCCceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHH
Confidence            23455544444    22 322 2222222222 256999999999999987643322  2555555544433  347889


Q ss_pred             HhCCccccCCCCCcEEEeec--CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH--------cCCCC
Q 004234          451 LSHGFFHADPHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ--------MGVLV  520 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~--~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~--------lG~~~  520 (766)
                      |..|++|+|+||.||++...  .++.++|+|||++..+......       ....++..++++++..        .+..+
T Consensus       129 H~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~~~~~  201 (319)
T 4euu_A          129 RENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF-------VSLYGTEEYLHPDMYERAVLRKDHQKKYG  201 (319)
T ss_dssp             HHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCB-------CCCCSCGGGCCHHHHHHHTSCCCCCCCBC
T ss_pred             HHCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCce-------eecccCCCccCHHHhhhccccccccCCCC
Confidence            99999999999999998321  2567999999999887654321       1123577788888876        35566


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~l~  537 (766)
                      +..|++++...+.+++.
T Consensus       202 ~~~DiwslG~il~el~~  218 (319)
T 4euu_A          202 ATVDLWSIGVTFYHAAT  218 (319)
T ss_dssp             TTHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHh
Confidence            77899999988776654

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.59  E-value=4e-15  Score=161.63  Aligned_cols=187  Identities=17%  Similarity=0.116  Sum_probs=124.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+.....                ..         ..        ..      .
T Consensus        23 ~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~----------------~~---------~~--------~~------~   63 (345)
T 1xjd_A           23 KMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVL----------------MD---------DD--------VE------C   63 (345)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHH----------------HT---------TC--------HH------H
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhh----------------hh---------hh--------HH------H
Confidence            6899999999999999  5999999998432100                00         00        00      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +..|.+.+...    .+++++.-..-+.......+|||||++|++|.++... ...++...+...+.+  ..+..+|..|
T Consensus        64 ~~~E~~il~~~----~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~  138 (345)
T 1xjd_A           64 TMVEKRVLSLA----WEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQS-CHKFDLSRATFYAAEIILGLQFLHSKG  138 (345)
T ss_dssp             HHHHHHHHHHH----TTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhc----CCCCCCCcEEEEEEeCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22333333322    1234332222222334567999999999999886542 223454444433333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  +|.++|+|||++.........      .....+++.++++++..-+..+...|++++...+.+
T Consensus       139 ivHrDlkp~NIll~~--~g~vkL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  210 (345)
T 1xjd_A          139 IVYRDLKLDNILLDK--DGHIKIADFGMCKENMLGDAK------TNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYE  210 (345)
T ss_dssp             CBCCCCCGGGEEECT--TSCEEECCCTTCBCCCCTTCC------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHH
T ss_pred             eEeCCCChhhEEECC--CCCEEEeEChhhhhcccCCCc------ccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHH
Confidence            999999999999985  899999999999865322111      112346888999999877666777899999988776


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       211 ll~  213 (345)
T 1xjd_A          211 MLI  213 (345)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            653

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.58  E-value=1e-15  Score=159.71  Aligned_cols=185  Identities=15%  Similarity=0.179  Sum_probs=123.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                            +
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--------------------------------------------~   51 (298)
T 1csn_A           16 RRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAP--------------------------------------------Q   51 (298)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSC--------------------------------------------C
T ss_pred             EEEeecCCEEEEEEEECCCCcEEEEEEeccCCccH--------------------------------------------H
Confidence            6899999999999997  69999999874321100                                            2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceee--eccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~--~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      +.+|.+.+..+.    ++++  +|.++  .......++||||+ |++|.++.......++...+...+.+  ..+..+|.
T Consensus        52 ~~~e~~~~~~l~----~~~~--i~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~  124 (298)
T 1csn_A           52 LRDEYRTYKLLA----GCTG--IPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHE  124 (298)
T ss_dssp             HHHHHHHHHHTT----TCTT--CCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh----cCCC--CCeEEeecCCCceeEEEEEec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            334444444432    2222  33333  33456679999999 99999976543334566555554433  34788999


Q ss_pred             CCccccCCCCCcEEEeecCCCc-----EEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGR-----LIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~-----l~LiDFGlv~~L~~~~r~~l~~-l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~  526 (766)
                      .|++|+|+||.||+++.  ++.     ++|+|||++..+.......... .......+++.+++++...-+..++..|++
T Consensus       125 ~~ivH~Dlkp~NIl~~~--~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~  202 (298)
T 1csn_A          125 KSLVYRDIKPDNFLIGR--PNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLE  202 (298)
T ss_dssp             TTEECCCCCGGGEEECC--SSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHH
T ss_pred             CCEecCCCCHHHEEecc--CCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHH
Confidence            99999999999999975  443     9999999998775432110000 000112467778888888766667778999


Q ss_pred             HHHHHHHHHH
Q 004234          527 AVRRTAQFFL  536 (766)
Q Consensus       527 ~l~~~i~~~l  536 (766)
                      ++...+.+++
T Consensus       203 slG~il~el~  212 (298)
T 1csn_A          203 ALGHVFMYFL  212 (298)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988777665

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.58  E-value=6.6e-16  Score=165.27  Aligned_cols=186  Identities=18%  Similarity=0.181  Sum_probs=122.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+........                                   .      +-.
T Consensus        13 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~------~~~   51 (323)
T 3tki_A           13 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-----------------------------------C------PEN   51 (323)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECC------------------------------------------------C
T ss_pred             eEEecCCCEEEEEEEECCCCcEEEEEEEEcccccc-----------------------------------h------HHH
Confidence            6899999999999998  59999999974321100                                   0      012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|+..+..+    . +++|.-..-+....+..++||||++|++|.+.... ...++...+...+.+  ..+..+|..|
T Consensus        52 ~~~E~~~l~~l----~-hpnIv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~aL~~LH~~g  125 (323)
T 3tki_A           52 IKKEICINKML----N-HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLHGIG  125 (323)
T ss_dssp             HHHHHHHHHHC----C-CTTBCCEEEEEECSSEEEEEEECCTTEEGGGGSBT-TTBCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCCCCeEEEEEecCCeEEEEEEcCCCCcHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34455444443    2 23332222223345567999999999999886532 223455444444333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~-~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||+||+++.  ++.++|+|||++..+........    .....+++.++++++...+.. +...|++++...+.
T Consensus       126 ivH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~  199 (323)
T 3tki_A          126 ITHRDIKPENLLLDE--RDNLKISDFGLATVFRYNNRERL----LNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLT  199 (323)
T ss_dssp             EECSCCSGGGEEECT--TCCEEECCCTTCEECEETTEECC----BCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHH
T ss_pred             ccccccchHHEEEeC--CCCEEEEEeeccceeccCCcccc----cCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHH
Confidence            999999999999985  78999999999987643321111    111346777888888865443 44579999988777


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       200 ~ll~  203 (323)
T 3tki_A          200 AMLA  203 (323)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6653

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.58  E-value=2.7e-15  Score=162.68  Aligned_cols=200  Identities=17%  Similarity=0.190  Sum_probs=125.9

Q ss_pred             ccccccceeEEEEEee-c------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-K------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|++|.||+|++ .      ++.||||+.+.... ....++++++.+..                           
T Consensus        41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~e~~~~~~~~~---------------------------   92 (364)
T 3op5_A           41 LPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNG-PLFTELKFYQRAAK---------------------------   92 (364)
T ss_dssp             EECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCH-HHHHHHHHHHHHCC---------------------------
T ss_pred             EEEecCCCeEEEEeeecCccccccccceEEEEeeccch-hHHHHHHHHHhhhh---------------------------
Confidence            6899999999999988 2      47899999865432 11222222111100                           


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC------CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT------TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES  445 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s------t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~  445 (766)
                         ..+..|...+    ..+   .+..+++++....      ...+|||||+ |++|.++.......++...+...+.+.
T Consensus        93 ---~~~~~e~~~~----~~l---~h~~iv~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi  161 (364)
T 3op5_A           93 ---PEQIQKWIRT----RKL---KYLGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRI  161 (364)
T ss_dssp             ---HHHHHHHHHH----TTC---SCCCSCCEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHH----hhc---cCCCCCeEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHH
Confidence               0111111111    112   2233444443222      2369999999 999999765443456666655554443


Q ss_pred             --HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHH-HHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004234          446 --YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL-EAFYGIYEKDADKVLQAMVQMGVLVPT  522 (766)
Q Consensus       446 --~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~-~l~~a~~~~D~~~v~~~l~~lG~~~~~  522 (766)
                        .+..+|..|++|+|+||.||+++...++.++|+|||++..+......... ........+++.++++++..-...++.
T Consensus       162 ~~~l~~lH~~~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  241 (364)
T 3op5_A          162 LDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRR  241 (364)
T ss_dssp             HHHHHHHHHTTEECCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHH
T ss_pred             HHHHHHHHHCCeEEecCCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCch
Confidence              48889999999999999999998333789999999999887654221000 000011236778889998876666777


Q ss_pred             CCHHHHHHHHHHHHH
Q 004234          523 GDTTAVRRTAQFFLN  537 (766)
Q Consensus       523 ~D~~~l~~~i~~~l~  537 (766)
                      .|++++...+.+++.
T Consensus       242 ~Di~slG~~l~el~~  256 (364)
T 3op5_A          242 GDLEILGYCMIQWLT  256 (364)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHh
Confidence            899999988777654

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.58  E-value=8e-16  Score=163.25  Aligned_cols=186  Identities=16%  Similarity=0.147  Sum_probs=125.2

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|++|.||+|+. +|+.||||+.++.....                                         .+..+
T Consensus        36 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-----------------------------------------~~~~~   74 (326)
T 3uim_A           36 NILGRGGFGKVYKGRLADGTLVAVKRLKEERTQG-----------------------------------------GELQF   74 (326)
T ss_dssp             TEEECCSSSEEEEECCSSSCCEEEEECCC----------------------------------------------CCCHH
T ss_pred             eeEecCCCcEEEEEEecCCCEEEEEEeccccCch-----------------------------------------HHHHH
Confidence            6899999999999998 69999999985432110                                         01124


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHHHH--HHHHHHHh
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      .+|++.+..+    . ++++.-..-+....+..++||||++|++|.++.....   ..++...+...+.+  ..+..+|.
T Consensus        75 ~~e~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~  149 (326)
T 3uim_A           75 QTEVEMISMA----V-HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHD  149 (326)
T ss_dssp             HHHHHGGGTC----C-CTTBCCCCEEECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc----c-CCCccceEEEEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4454433322    2 2333222222234566799999999999998754321   12444444433332  34788999


Q ss_pred             C---CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          453 H---GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       453 ~---GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      .   |++|+|+||+||+++.  ++.++|+|||++..++......     .....+++.++++++...+..++..|++++.
T Consensus       150 ~~~~~ivH~Dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG  222 (326)
T 3uim_A          150 HCDPKIIHRDVKAANILLDE--EFEAVVGDFGLAKLMDYKDTHV-----TTAVRGTIGHIAPEYLSTGKSSEKTDVFGYG  222 (326)
T ss_dssp             SSSSCEECCCCSGGGEEECT--TCCEEECCCSSCEECCSSSSCE-----ECCCCSCGGGCCHHHHHHSEECHHHHHHHHH
T ss_pred             CCCCCeEeCCCchhhEEECC--CCCEEeccCccccccCcccccc-----cccccCCcCccCHHHhccCCCCccccchhHH
Confidence            8   9999999999999985  8899999999998775432111     1112367788889888777777788999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       223 ~il~~l~~  230 (326)
T 3uim_A          223 VMLLELIT  230 (326)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88776654

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.58  E-value=4.5e-15  Score=155.22  Aligned_cols=189  Identities=13%  Similarity=0.078  Sum_probs=124.6

Q ss_pred             ccccccceeEEEEEee-c----CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-K----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~----G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|++|+||+|++ +    +..||||+.+......                                         .
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~-----------------------------------------~   69 (298)
T 3f66_A           31 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG-----------------------------------------E   69 (298)
T ss_dssp             EEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHH-----------------------------------------H
T ss_pred             ceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHH-----------------------------------------H
Confidence            6899999999999997 2    2368899874321110                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      .-.+.+|+..+.++    .+..-+.+-.++.+.....+++|||++|++|.++........+...+...+.+  ..+..+|
T Consensus        70 ~~~~~~E~~~l~~l----~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH  145 (298)
T 3f66_A           70 VSQFLTEGIIMKDF----SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLA  145 (298)
T ss_dssp             HHHHHHHHHHHHTC----CCTTBCCCCEEECCSSSCCEEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----CCCCEeeeeeEEEcCCCceEEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence            11344555544443    23222333333334445679999999999999976544444555555444333  3488899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|+||.||+++.  ++.++|+|||++..+..........  .....+++.+++++....+..++..|++++...
T Consensus       146 ~~~i~H~dikp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  221 (298)
T 3f66_A          146 SKKFVHRDLAARNCMLDE--KFTVKVADFGLARDMYDKEYYSVHN--KTGAKLPVKWMALESLQTQKFTTKSDVWSFGVL  221 (298)
T ss_dssp             HTTCCCSCCSGGGEEECT--TCCEEECSCGGGCCCSCGGGCBC-------CCBCGGGSCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             hCCccCCCCchheEEECC--CCCEEECcccccccccccchhcccc--ccCCCCCccccChHHhcCCCCChHHHHHHHHHH
Confidence            999999999999999985  8899999999998876543211111  111234566788888877666777899999887


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       222 l~~l~  226 (298)
T 3f66_A          222 LWELM  226 (298)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76655

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.58  E-value=1.8e-15  Score=168.36  Aligned_cols=186  Identities=19%  Similarity=0.193  Sum_probs=124.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+.+...                ....-.                       .-.
T Consensus        75 ~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~----------------~~~~~~-----------------------~~~  115 (410)
T 3v8s_A           75 KVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFE----------------MIKRSD-----------------------SAF  115 (410)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH----------------HHHTCC-----------------------CST
T ss_pred             EEEEcCCCEEEEEEEECCCCcEEEEEEEehhh----------------hhhhHH-----------------------HHH
Confidence            6899999999999999  58999999974210                000000                       001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~~G  454 (766)
                      +..|...+..+     ++++|.-..-+.......+|||||++|++|.++..  ...++.......+.  -..+..+|..|
T Consensus       116 ~~~E~~il~~l-----~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~--~~~~~e~~~~~~~~qi~~aL~~LH~~g  188 (410)
T 3v8s_A          116 FWEERDIMAFA-----NSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMS--NYDVPEKWARFYTAEVVLALDAIHSMG  188 (410)
T ss_dssp             HHHHHHHHHHC-----CCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC-----CCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33344433332     23333222222233456799999999999998753  33455444433332  23488899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC----CCCCCCHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV----LVPTGDTTAVRR  530 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~----~~~~~D~~~l~~  530 (766)
                      ++|+|+||+||+++.  +|.++|+|||++..+.......     .....+++.++++++.....    .+...|++++..
T Consensus       189 ivHrDLKp~NILl~~--~g~ikL~DFG~a~~~~~~~~~~-----~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGv  261 (410)
T 3v8s_A          189 FIHRDVKPDNMLLDK--SGHLKLADFGTCMKMNKEGMVR-----CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGV  261 (410)
T ss_dssp             EECCCCSGGGEEECT--TSCEEECCCTTCEECCTTSEEE-----CCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHH
T ss_pred             eEeccCCHHHeeECC--CCCEEEeccceeEeeccCCccc-----ccCCcCCccccCHHHhhccCCCcCCCCcceEecchH
Confidence            999999999999985  8999999999998876542100     01234788999999987543    456789999998


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       262 ilyell~  268 (410)
T 3v8s_A          262 FLYEMLV  268 (410)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8877664

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.58  E-value=2.7e-15  Score=160.42  Aligned_cols=187  Identities=14%  Similarity=0.074  Sum_probs=124.2

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|++|.||+|+.       +++.||||+.++.....                                   .    
T Consensus        51 ~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~----   91 (344)
T 1rjb_A           51 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSS-----------------------------------E----   91 (344)
T ss_dssp             EEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------------------------------------------
T ss_pred             eeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHH-----------------------------------H----
Confidence            6899999999999996       35789999985432110                                   0    


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcC-------------------
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG-------------------  432 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g-------------------  432 (766)
                        .-.+.+|++.+.++.    .+++|.-..-+.......++||||++|++|.++.......                   
T Consensus        92 --~~~~~~E~~~l~~l~----~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  165 (344)
T 1rjb_A           92 --REALMSELKMMTQLG----SHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEED  165 (344)
T ss_dssp             --CHHHHHHHHHHHHHC----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC------------------
T ss_pred             --HHHHHHHHHHHHhhc----CCCCeeeEEEEEeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccc
Confidence              013445555555542    3344333323334456789999999999999876432211                   


Q ss_pred             ---CCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHH
Q 004234          433 ---VDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDAD  507 (766)
Q Consensus       433 ---~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~  507 (766)
                         ++...+...+.+  ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......    ......+++.
T Consensus       166 ~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~~----~~~~~~~t~~  239 (344)
T 1rjb_A          166 LNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTH--GKVVKICDFGLARDIMSDSNYV----VRGNARLPVK  239 (344)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEEET--TTEEEECCCGGGSCGGGCTTSE----EETTEEECGG
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEEcC--CCcEEeCCCccCcccccCccce----eccCccCccC
Confidence               344444333333  3478889999999999999999985  8899999999998775432110    0111234556


Q ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          508 KVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       508 ~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ++++++...+..++..|++++...+.+++
T Consensus       240 y~aPE~~~~~~~~~~~Di~slG~il~el~  268 (344)
T 1rjb_A          240 WMAPESLFEGIYTIKSDVWSYGILLWEIF  268 (344)
T ss_dssp             GCCHHHHHHCCCCHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHhccCCCChhHhHHHHHHHHHHHH
Confidence            88888887777777889999988776654

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.58  E-value=5.3e-15  Score=158.29  Aligned_cols=188  Identities=18%  Similarity=0.145  Sum_probs=127.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                     . ....+.              -+
T Consensus        17 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~---------------------~-~~~~~~--------------~~   60 (326)
T 2y0a_A           17 EELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKS---------------------S-RRGVSR--------------ED   60 (326)
T ss_dssp             EEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTT---------------------C-SSSBCH--------------HH
T ss_pred             eEEeeCCCeEEEEEEECCCCcEEEEEEEEcccccc---------------------c-cchhhH--------------HH
Confidence            6899999999999998  59999999885432211                     0 000000              13


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|+..+.++.     ++++.-..-+.......++||||++|++|.++... ...++...+...+.+  ..+..+|..|
T Consensus        61 ~~~E~~~l~~l~-----hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~al~~lH~~~  134 (326)
T 2y0a_A           61 IEREVSILKEIQ-----HPNVITLHEVYENKTDVILILELVAGGELFDFLAE-KESLTEEEATEFLKQILNGVYYLHSLQ  134 (326)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHTT-SSCCBHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-----CCCCCcEEEEEEeCCEEEEEEEcCCCCCHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHCC
Confidence            445555554442     34333222223445668999999999999987532 233455554444433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCC----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGG----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g----~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      ++|+|+||.||+++.  ++    .++|+|||++..++.....       ....+++.++++++...+..++..|++++..
T Consensus       135 ivH~Dlkp~NIll~~--~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  205 (326)
T 2y0a_A          135 IAHFDLKPENIMLLD--RNVPKPRIKIIDFGLAHKIDFGNEF-------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGV  205 (326)
T ss_dssp             EECCCCCGGGEEESC--SSSSSCCEEECCCTTCEECCTTSCC-------CCCCSCTTTCCHHHHTTCCCCTHHHHHHHHH
T ss_pred             eEcCCCCHHHEEEec--CCCCCCCEEEEECCCCeECCCCCcc-------ccccCCcCcCCceeecCCCCCcHHHHHHHHH
Confidence            999999999999985  44    7999999999887643211       1124677889999987777777889999998


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       206 il~~ll~  212 (326)
T 2y0a_A          206 ITYILLS  212 (326)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776653

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.58  E-value=1.4e-15  Score=170.00  Aligned_cols=186  Identities=15%  Similarity=0.121  Sum_probs=121.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.++.....                    .            +       ....
T Consensus       154 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--------------------~------------~-------~~~~  194 (446)
T 4ejn_A          154 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVA--------------------K------------D-------EVAH  194 (446)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC----------------------------------------------
T ss_pred             EEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhh--------------------h------------H-------HHHH
Confidence            6899999999999998  69999999985321100                    0            0       0001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh-C
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS-H  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~-~  453 (766)
                      +.+|++.+..    +. ++++.-..-+.......+|||||++|++|.+.... ...++...+...+.+  ..+..+|. .
T Consensus       195 ~~~e~~~l~~----l~-h~~iv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~  268 (446)
T 4ejn_A          195 TLTENRVLQN----SR-HPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSR-ERVFSEDRARFYGAEIVSALDYLHSEK  268 (446)
T ss_dssp             ------CCCC----CS-CTTSCCEEEEEEETTEEEEEECCCSSCBHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHh----CC-CCeEeeEEEEEeeCCEEEEEEeeCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHhhcC
Confidence            2233332221    22 23332222222334567999999999999876532 233455544443333  34788997 9


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||.||+++.  ++.++|+|||++.........      .....+++.++++++..-+..++..|++++...+.
T Consensus       269 giiHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~  340 (446)
T 4ejn_A          269 NVVYRDLKLENLMLDK--DGHIKITDFGLCKEGIKDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMY  340 (446)
T ss_dssp             CCCCCCCCGGGEEECS--SSCEEECCCCCCCTTCC-----------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHH
T ss_pred             CEEECCCCHHHEEECC--CCCEEEccCCCceeccCCCcc------cccccCCccccCHhhcCCCCCCCccchhhhHHHHH
Confidence            9999999999999986  889999999999875433221      12235788899999998777788889999998877


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       341 ell~  344 (446)
T 4ejn_A          341 EMMC  344 (446)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            6653

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.58  E-value=3.7e-15  Score=156.46  Aligned_cols=183  Identities=18%  Similarity=0.172  Sum_probs=125.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.++.....                           .              .-+
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------~--------------~~~   66 (303)
T 3a7i_A           28 EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAED---------------------------E--------------IED   66 (303)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEETTTCST---------------------------T--------------HHH
T ss_pred             hhhcccCCeEEEEEEECCCCcEEEEEEecccccHH---------------------------H--------------HHH
Confidence            5799999999999998  59999999985432111                           0              012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|+..+..+     .++++.-..-+.......++||||++|++|.++..  ...++...+...+.+  ..+..+|..|
T Consensus        67 ~~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~  139 (303)
T 3a7i_A           67 IQQEITVLSQC-----DSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE--PGPLDETQIATILREILKGLDYLHSEK  139 (303)
T ss_dssp             HHHHHHHHHHC-----CCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHT--TSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC-----CCCCEeEEEEEEecCCeEEEEEEeCCCCcHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34444444433     22333222222233466799999999999998753  334555555444433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  ++.++|+|||++..+......      .....++..++++++...+..++..|++++...+.+
T Consensus       140 i~H~dl~p~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~  211 (303)
T 3a7i_A          140 KIHRDIKAANVLLSE--HGEVKLADFGVAGQLTDTQIK------RNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIE  211 (303)
T ss_dssp             EECCCCSGGGEEECT--TSCEEECCCTTCEECBTTBCC------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHH
T ss_pred             CccCCCChheEEECC--CCCEEEeecccceecCccccc------cCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHH
Confidence            999999999999985  889999999999887553211      011245677888888877777778899999887766


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       212 l~~  214 (303)
T 3a7i_A          212 LAR  214 (303)
T ss_dssp             HHH
T ss_pred             Hcc
Confidence            553

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.58  E-value=8.5e-15  Score=154.09  Aligned_cols=185  Identities=15%  Similarity=0.091  Sum_probs=119.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+........                                  +..+      .
T Consensus         9 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~------~   48 (311)
T 4agu_A            9 GKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDP----------------------------------VIKK------I   48 (311)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-H----------------------------------HHHH------H
T ss_pred             eEEeecCCeEEEEEEeCCCCcEEEEEEeeccccch----------------------------------HHHH------H
Confidence            6899999999999999  59999999874332111                                  0111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++.     ++++.-..-+....+..++||||++|..+.++... ..+++...+...+.+  ..+..+|..|
T Consensus        49 ~~~E~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~i~~~l~~~l~~lH~~~  122 (311)
T 4agu_A           49 ALREIRMLKQLK-----HPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRY-QRGVPEHLVKSITWQTLQAVNFCHKHN  122 (311)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-----CCCccchhheeecCCeEEEEEEeCCCchHHHHHhh-hcCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            344555555442     23332222222345667999999999998886532 233554444433332  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||+||+++.  ++.++|+|||++..++......      ....++..++++++..- ...++..|++++...+.
T Consensus       123 ivH~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~  194 (311)
T 4agu_A          123 CIHRDVKPENILITK--HSVIKLCDFGFARLLTGPSDYY------DDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFA  194 (311)
T ss_dssp             EECCCCSGGGEEECT--TSCEEECCCTTCEECC------------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHH
T ss_pred             CcCCCCChhhEEEcC--CCCEEEeeCCCchhccCccccc------CCCcCCccccChHHHhcCCCCCcchhhHHHHHHHH
Confidence            999999999999985  8899999999998876433211      11234566777777654 44567789999998777


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       195 ~l~~  198 (311)
T 4agu_A          195 ELLS  198 (311)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6653

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.58  E-value=1.1e-14  Score=157.82  Aligned_cols=191  Identities=18%  Similarity=0.174  Sum_probs=127.7

Q ss_pred             ChhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004234          288 PLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (766)
Q Consensus       288 ~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (766)
                      .+.+.|...  +.||+|++|+||+|+.  +|+.||||+........                                 .
T Consensus        51 ~~~~~y~~~--~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~---------------------------------~   95 (348)
T 1u5q_A           51 DPEKLFSDL--REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS---------------------------------N   95 (348)
T ss_dssp             CHHHHEEEE--EEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCH---------------------------------H
T ss_pred             chhhheeee--eEEccCCCEEEEEEEEccCCeEEEEEEEccccccc---------------------------------h
Confidence            344444332  5799999999999997  69999999885432111                                 0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH-
Q 004234          366 ECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE-  444 (766)
Q Consensus       366 E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~-  444 (766)
                      +..      -++.+|++.+.++    . ++++.-..-+.......+|||||++| ++.+........++...+...+.+ 
T Consensus        96 ~~~------~~~~~E~~~l~~l----~-hpniv~~~~~~~~~~~~~lv~e~~~g-~l~~~l~~~~~~l~~~~~~~i~~qi  163 (348)
T 1u5q_A           96 EKW------QDIIKEVRFLQKL----R-HPNTIQYRGCYLREHTAWLVMEYCLG-SASDLLEVHKKPLQEVEIAAVTHGA  163 (348)
T ss_dssp             HHH------HHHHHHHHHHHHC----C-CTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             HHH------HHHHHHHHHHHhC----C-CCCEeeEEEEEEECCeEEEEEecCCC-CHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            000      1344555555444    2 23332222222335677999999997 555544333344555555444433 


Q ss_pred             -HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCC
Q 004234          445 -SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLV  520 (766)
Q Consensus       445 -~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~---lG~~~  520 (766)
                       ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+++..          ...+++.++++++..   .+..+
T Consensus       164 ~~aL~~LH~~~ivH~Dlkp~NIll~~--~~~~kL~DfG~a~~~~~~~----------~~~gt~~y~aPE~~~~~~~~~~~  231 (348)
T 1u5q_A          164 LQGLAYLHSHNMIHRDVKAGNILLSE--PGLVKLGDFGSASIMAPAN----------SFVGTPYWMAPEVILAMDEGQYD  231 (348)
T ss_dssp             HHHHHHHHHTTCBCCCCSGGGEEEET--TTEEEECCCTTCBSSSSBC----------CCCSCGGGCCHHHHHTTSSCCBC
T ss_pred             HHHHHHHHhCCeeeCCCCHHHEEECC--CCCEEEeeccCceecCCCC----------cccCCcceeCHhhhccccCCCCC
Confidence             3478899999999999999999985  8999999999998876532          124678888999874   35566


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~l~  537 (766)
                      +..|++++...+.+++.
T Consensus       232 ~~~DiwslG~il~ell~  248 (348)
T 1u5q_A          232 GKVDVWSLGITCIELAE  248 (348)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHh
Confidence            77899999987776653

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.58  E-value=3.7e-15  Score=162.03  Aligned_cols=188  Identities=12%  Similarity=0.093  Sum_probs=119.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|++  +|+.||||+.++.....                                 ....+      .
T Consensus        68 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~~~~------~  108 (371)
T 3q60_A           68 EPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENS---------------------------------RSELE------R  108 (371)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTH---------------------------------HHHHH------H
T ss_pred             eeccCCCCEEEEEEEECCCCceeEEEEEEeccccc---------------------------------ccHHH------H
Confidence            6899999999999998  69999999986643211                                 00001      2


Q ss_pred             HHHHHHHHHHHHHhcCC----CCccccc-eeeecc----------------CCCeEEEEeecCCCChhhhhhhhhcCCC-
Q 004234          377 YTQEAANAELFASNFKD----MDYVKVP-TIFWEY----------------TTPQILTMEYVPGIKINRIQSLDELGVD-  434 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~----~~~V~vP-~v~~e~----------------st~~vLVMEyieG~~L~d~~~l~~~g~d-  434 (766)
                      +..|+..+..+.....+    ...+.+| .++..-                ....+|||||++ ++|.++......... 
T Consensus       109 ~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~  187 (371)
T 3q60_A          109 LHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVF  187 (371)
T ss_dssp             HHHHHHHHHHHHC----------CBCCCCEEEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHhcccChhhhhhceeEEeeehheecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccch
Confidence            33444444444320000    0112222 122110                033699999999 688887543222222 


Q ss_pred             -HH------HHHHHHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHH
Q 004234          435 -RK------RLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDAD  507 (766)
Q Consensus       435 -~~------~la~~lv~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~  507 (766)
                       ..      .....-+-..+..+|..|++|+|+||.||+++.  +|.++|+|||++...+.....         ....+.
T Consensus       188 ~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~--~~~~kL~DFG~a~~~~~~~~~---------~~~t~~  256 (371)
T 3q60_A          188 RGDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMP--DGRLMLGDVSALWKVGTRGPA---------SSVPVT  256 (371)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEECT--TSCEEECCGGGEEETTCEEEG---------GGSCGG
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHCCCccCcCCHHHEEECC--CCCEEEEecceeeecCCCccC---------ccCCcC
Confidence             22      122122334578899999999999999999985  889999999999988654321         123478


Q ss_pred             HHHHHHHHc--CCCCCCCCHHHHHHHHHHHHH
Q 004234          508 KVLQAMVQM--GVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       508 ~v~~~l~~l--G~~~~~~D~~~l~~~i~~~l~  537 (766)
                      +++|++...  ...++..|++++...+.+++.
T Consensus       257 y~aPE~~~~~~~~~~~~~DiwSlG~il~ellt  288 (371)
T 3q60_A          257 YAPREFLNASTATFTHALNAWQLGLSIYRVWC  288 (371)
T ss_dssp             GCCHHHHTCSEEECCHHHHHHHHHHHHHHHHH
T ss_pred             CcChhhccCCCCCcCccccHHHHHHHHHHHHh
Confidence            888888865  445667899999988777654

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.58  E-value=4.5e-15  Score=153.01  Aligned_cols=183  Identities=20%  Similarity=0.184  Sum_probs=120.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.++......                                        .+.+
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~----------------------------------------~~~~   56 (289)
T 1x8b_A           17 EKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSV----------------------------------------DEQN   56 (289)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSH----------------------------------------HHHH
T ss_pred             hhhcCCCceEEEEEEEcCCCceEEEEEecccccccH----------------------------------------HHHH
Confidence            6899999999999999  599999999864422110                                        1223


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHHHH--HHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      +.+|...+..+    ..++++.-..-+....+..++||||++|++|.++.....   ..++...+...+.+  ..+..+|
T Consensus        57 ~~~e~~~~~~l----~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH  132 (289)
T 1x8b_A           57 ALREVYAHAVL----GQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH  132 (289)
T ss_dssp             HHHHHHHHHHS----CSCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh----CCCCCeeeeeeeeecCCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            34444444332    133443322223344567799999999999999754321   23455554444433  3478899


Q ss_pred             hCCccccCCCCCcEEEeec-----------------CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDV-----------------NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  514 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~-----------------~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~  514 (766)
                      ..|++|+|+||.||+++..                 ....++++|||++..++....          ..++..+++++..
T Consensus       133 ~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~----------~~gt~~y~aPE~~  202 (289)
T 1x8b_A          133 SMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQV----------EEGDSRFLANEVL  202 (289)
T ss_dssp             HTTEECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTCSCC----------CCCCGGGCCHHHH
T ss_pred             hCCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCccc----------cCCCccccChhHh
Confidence            9999999999999999741                 134799999999988765432          2367778888887


Q ss_pred             HcC-CCCCCCCHHHHHHHHHHH
Q 004234          515 QMG-VLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       515 ~lG-~~~~~~D~~~l~~~i~~~  535 (766)
                      .-+ ..++..|++++...+.++
T Consensus       203 ~~~~~~~~~~Di~slG~il~~l  224 (289)
T 1x8b_A          203 QENYTHLPKADIFALALTVVCA  224 (289)
T ss_dssp             TTCCTTHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCchhhHHHHHHHHHHH
Confidence            644 223457888887665443

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.58  E-value=6.6e-15  Score=160.45  Aligned_cols=186  Identities=12%  Similarity=0.078  Sum_probs=126.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                 .+       .-.
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~---------------------------------~~-------~~~   74 (362)
T 2bdw_A           35 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSA---------------------------------RD-------FQK   74 (362)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCH---------------------------------HH-------HHH
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCH---------------------------------HH-------HHH
Confidence            6799999999999998  59999999985431110                                 00       012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++     ++++|.-..-+....+..++||||++|++|.+.... ...++...+...+.+  ..+..+|..|
T Consensus        75 ~~~E~~il~~l-----~hpnIv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~al~~lH~~~  148 (362)
T 2bdw_A           75 LEREARICRKL-----QHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVA-REFYSEADASHCIQQILESIAYCHSNG  148 (362)
T ss_dssp             HHHHHHHHHHC-----CCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTT-CSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC-----CCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            44555555544     234332222223345667999999999999875432 223454444444333  3478899999


Q ss_pred             ccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||.||+++.. .++.++|+|||++..+......       ....+++.++++++...+..++..|++++...+.
T Consensus       149 ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~  221 (362)
T 2bdw_A          149 IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW-------HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILY  221 (362)
T ss_dssp             CBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCSC-------CCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHH
T ss_pred             eEeccCchHHEEEecCCCCCCEEEeecCcceEecCCccc-------ccCCCCccccCHHHHccCCCCchhhHHHHHHHHH
Confidence            9999999999999752 1356999999999887653211       1134678889999987766777889999998877


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       222 ~ll~  225 (362)
T 2bdw_A          222 ILLV  225 (362)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.58  E-value=5.2e-15  Score=156.75  Aligned_cols=187  Identities=15%  Similarity=0.170  Sum_probs=111.5

Q ss_pred             ccccccceeEEEEEee--cCe---eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGE---EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~---~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|++|.||+|++  +++   .||||+.++.....                                 .       .
T Consensus        29 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~---------------------------------~-------~   68 (323)
T 3qup_A           29 RMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIAS---------------------------------S-------D   68 (323)
T ss_dssp             EEEEEETTEEEEEEEC-------CEEEEEEC------C---------------------------------H-------H
T ss_pred             ceecccCCeEEEEEEEcccCCcceeEEEEEecccccCH---------------------------------H-------H
Confidence            6899999999999998  233   89999885432111                                 0       0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCe------EEEEeecCCCChhhhhhhhhc-----CCCHHHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQ------ILTMEYVPGIKINRIQSLDEL-----GVDRKRLGRYA  442 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~------vLVMEyieG~~L~d~~~l~~~-----g~d~~~la~~l  442 (766)
                      .-++.+|++.+.++    .+..-+.+-.++.. ....      +++|||++|++|.++......     .++...+...+
T Consensus        69 ~~~~~~E~~~l~~l----~h~~iv~~~~~~~~-~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~  143 (323)
T 3qup_A           69 IEEFLREAACMKEF----DHPHVAKLVGVSLR-SRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFM  143 (323)
T ss_dssp             HHHHHHHHHHHTTC----CCTTBCCCCEEEEC-C-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC----CCCceehhhceeec-cccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHH
Confidence            11344555544443    22222222222221 2222      899999999999987543221     24555544444


Q ss_pred             HH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004234          443 VE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (766)
Q Consensus       443 v~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~  520 (766)
                      .+  ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.........    ......+.+++++...-+..+
T Consensus       144 ~qi~~al~~LH~~~ivH~Dikp~NIli~~--~~~~kl~Dfg~a~~~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~  217 (323)
T 3qup_A          144 VDIACGMEYLSSRNFIHRDLAARNCMLAE--DMTVCVADFGLSRKIYSGDYYRQG----CASKLPVKWLALESLADNLYT  217 (323)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCSGGGEEECT--TSCEEECCCCC---------------------CCGGGCCHHHHHHCCCC
T ss_pred             HHHHHHHHHHHcCCcccCCCCcceEEEcC--CCCEEEeecccccccccccccccc----ccccCcccccCchhhcCCCCC
Confidence            33  3478899999999999999999985  889999999999887554321111    112235567788887777677


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFFL  536 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~l  536 (766)
                      +..|++++...+.+++
T Consensus       218 ~~~Di~slG~il~ell  233 (323)
T 3qup_A          218 VHSDVWAFGVTMWEIM  233 (323)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CccchhhHHHHHHHHH
Confidence            7789999998776654

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.57  E-value=7.6e-15  Score=164.96  Aligned_cols=187  Identities=12%  Similarity=0.073  Sum_probs=126.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||+|+........                                  .      ..-.
T Consensus        17 ~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~----------------------------------~------~~~~   56 (444)
T 3soa_A           17 EELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSA----------------------------------R------DHQK   56 (444)
T ss_dssp             EEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHH----------------------------------H------HHHH
T ss_pred             EEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCH----------------------------------H------HHHH
Confidence            6899999999999998  69999999885432110                                  0      0113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+..+    . +++|.-..-+.+..+..++||||++|++|.+.... ...++...+...+.+  ..+..+|..|
T Consensus        57 ~~~E~~il~~l----~-hpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~i~~-~~~~~e~~~~~i~~qil~aL~~lH~~g  130 (444)
T 3soa_A           57 LEREARICRLL----K-HPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVA-REYYSEADASHCIQQILEAVLHCHQMG  130 (444)
T ss_dssp             HHHHHHHHHHC----C-BTTBCCEEEEEECSSEEEEEECCCBCCBHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CcCCCeEEEEEEECCEEEEEEEeCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            44566555544    2 33332222222345667999999999999876432 233555544444333  3478899999


Q ss_pred             ccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||+||+++.. +++.++|+|||++..+.......      .-..+++.+++|++...+..++..|++++...+.
T Consensus       131 ivHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~------~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvily  204 (444)
T 3soa_A          131 VVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAW------FGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILY  204 (444)
T ss_dssp             CBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBC------CCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHH
T ss_pred             ccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCcee------ecccCCcccCCHHHhcCCCCCCccccHHHHHHHH
Confidence            9999999999999842 35789999999998876543210      1134688899999988776777889999998877


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       205 ell~  208 (444)
T 3soa_A          205 ILLV  208 (444)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7654

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.57  E-value=3.4e-15  Score=163.58  Aligned_cols=189  Identities=13%  Similarity=0.097  Sum_probs=116.1

Q ss_pred             ccccccceeEEEEEee---cC--eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL---KG--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G--~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|++|.||+|++   ++  ..||||+.+......                                         .
T Consensus        95 ~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------------~  133 (373)
T 3c1x_A           95 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG-----------------------------------------E  133 (373)
T ss_dssp             EEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSH-----------------------------------------H
T ss_pred             cEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHH-----------------------------------------H
Confidence            5799999999999997   22  468999874321111                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      .-+|.+|+..+.++    .+..-+.+-.++.+..+..++||||++|++|.++........+...+...+.+  ..+..+|
T Consensus       134 ~~~~~~E~~il~~l----~hpnIv~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH  209 (373)
T 3c1x_A          134 VSQFLTEGIIMKDF----SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLA  209 (373)
T ss_dssp             HHHHHHHHTTSTTC----CCTTBCCCCEEECCCSSCCEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----CCCCcceEEEEEEcCCCCeEEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence            11344555444333    22222233333333345679999999999999976544344555555444333  3488899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|+||.||+++.  ++.++|+|||++..+..........  ..-....+.+++++....+..++..|++++...
T Consensus       210 ~~~ivHrDlkp~NIll~~--~~~~kL~DFG~a~~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~i  285 (373)
T 3c1x_A          210 SKKFVHRDLAARNCMLDE--KFTVKVADFGLARDMYDKEFDSVHN--KTGAKLPVKWMALESLQTQKFTTKSDVWSFGVL  285 (373)
T ss_dssp             HTTCCCSCCCGGGEEECT--TCCEEECCC-----------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HCCEecCccchheEEECC--CCCEEEeeccccccccccccccccc--cCCCCCcccccChHHhcCCCCCcHHHHHHHHHH
Confidence            999999999999999985  8899999999998775433211110  111234556888888887777778899999987


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       286 l~ell  290 (373)
T 3c1x_A          286 LWELM  290 (373)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77665

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.57  E-value=2.3e-15  Score=157.48  Aligned_cols=188  Identities=18%  Similarity=0.189  Sum_probs=122.8

Q ss_pred             ccccccceeEEEEEee------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.||+|++|.||+|++      +|+.||||+.++.....                           .             
T Consensus        27 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~---------------------------~-------------   66 (302)
T 4e5w_A           27 RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGN---------------------------H-------------   66 (302)
T ss_dssp             EEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----C---------------------------C-------------
T ss_pred             hccCCCCceEEEEEEEccccCccCeEEEEEEecccccch---------------------------h-------------
Confidence            6899999999999983      58999999986532111                           0             


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~  448 (766)
                       .-++.+|++.+..+    .+ +++ .+-.++..- ....++||||++|++|.++.......++...+...+.+  ..+.
T Consensus        67 -~~~~~~E~~~l~~l----~h-~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~  140 (302)
T 4e5w_A           67 -IADLKKEIEILRNL----YH-ENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMD  140 (302)
T ss_dssp             -HHHHHHHHHHHHTC----CC-TTBCCEEEEEEC---CCEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhC----CC-CCeeeeeeEEecCCCceEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHH
Confidence             01234455444443    22 322 222222221 14468999999999999976444444565555544433  3488


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      .+|..|++|+|+||+||+++.  ++.++|+|||++..+........   ......++..++++++..-+..++..|++++
T Consensus       141 ~lH~~~i~H~dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  215 (302)
T 4e5w_A          141 YLGSRQYVHRDLAARNVLVES--EHQVKIGDFGLTKAIETDKEYYT---VKDDRDSPVFWYAPECLMQSKFYIASDVWSF  215 (302)
T ss_dssp             HHHHTTEECSCCSGGGEEEEE--TTEEEECCCTTCEECCTTCCEEE---CCCCTTCCGGGCCHHHHHHCEEEHHHHHHHH
T ss_pred             HhhcCCcccCCCchheEEEcC--CCCEEECcccccccccCCCccee---ccCCCCCCccccCCeeecCCCCCcchhHHHH
Confidence            899999999999999999986  88999999999987765321100   0011123445677777766666667899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       216 G~il~~l~~  224 (302)
T 4e5w_A          216 GVTLHELLT  224 (302)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            988777654

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.57  E-value=6.4e-15  Score=158.66  Aligned_cols=186  Identities=16%  Similarity=0.114  Sum_probs=125.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+..-.                                     ...      +
T Consensus        41 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------------------------------------~~~------~   77 (360)
T 3llt_A           41 RKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKK-------------------------------------YTR------S   77 (360)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECSCHH-------------------------------------HHH------H
T ss_pred             EEEcccCCeEEEEEEECCCCeEEEEEEeccchh-------------------------------------hhh------h
Confidence            6899999999999999  699999999842100                                     001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +..|+..+..+...-..+++|.-..-+.......+|||||+ |++|.++..... .+++...+...+.+  ..+..+|..
T Consensus        78 ~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~  156 (360)
T 3llt_A           78 AKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKM  156 (360)
T ss_dssp             HHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHhcccCCCCCCeecccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            23344444444321111222222222223456789999999 889988654322 23555555444433  348889999


Q ss_pred             CccccCCCCCcEEEee-----------------------cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHH
Q 004234          454 GFFHADPHPGNIAVDD-----------------------VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVL  510 (766)
Q Consensus       454 GffHaDpHPGNILV~~-----------------------~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~  510 (766)
                      |++|+|+||+||+++.                       ..++.++|+|||++...+....         -..+++.+++
T Consensus       157 ~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~---------~~~gt~~y~a  227 (360)
T 3llt_A          157 SLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHG---------SIINTRQYRA  227 (360)
T ss_dssp             TEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCC---------SCCSCGGGCC
T ss_pred             CeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCCc---------CccCcccccC
Confidence            9999999999999963                       1367899999999987654321         1346778889


Q ss_pred             HHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          511 QAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       511 ~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      +++..-+..++..|++++...+.+++.
T Consensus       228 PE~~~~~~~~~~~DiwslG~il~ell~  254 (360)
T 3llt_A          228 PEVILNLGWDVSSDMWSFGCVLAELYT  254 (360)
T ss_dssp             HHHHTTCCCCTTHHHHHHHHHHHHHHH
T ss_pred             cHHHcCCCCCCccchHHHHHHHHHHHH
Confidence            998887777888899999987776653

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.57  E-value=1.9e-15  Score=164.81  Aligned_cols=188  Identities=15%  Similarity=0.094  Sum_probs=123.1

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||.|++|.||+|++       +|+.||||+.+......                                        
T Consensus        77 ~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------------  116 (367)
T 3l9p_A           77 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQ----------------------------------------  116 (367)
T ss_dssp             EECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHH----------------------------------------
T ss_pred             eEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChh----------------------------------------
Confidence            6799999999999995       36789999874322111                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh------cCCCHHHHHHHHHH-
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE------LGVDRKRLGRYAVE-  444 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~------~g~d~~~la~~lv~-  444 (766)
                       .+.++.+|+..+.++     .+++|.-..-+.......++||||++|++|.++.....      ..++...+...+.+ 
T Consensus       117 -~~~~~~~E~~~l~~l-----~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi  190 (367)
T 3l9p_A          117 -DELDFLMEALIISKF-----NHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDI  190 (367)
T ss_dssp             -HHHHHHHHHHHHHHC-----CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHhC-----CCCCCCeEEEEEecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHH
Confidence             123455666655554     22333222222233456799999999999998764322      22444444443333 


Q ss_pred             -HHHHHHHhCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004234          445 -SYLEQILSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (766)
Q Consensus       445 -~~l~qI~~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~  522 (766)
                       ..+..+|..|++|+|+||.||+++.. ++..++|+|||++..+.......    ......+++.++++++..-+..++.
T Consensus       191 ~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~  266 (367)
T 3l9p_A          191 ACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYR----KGGCAMLPVKWMPPEAFMEGIFTSK  266 (367)
T ss_dssp             HHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCT----TCCGGGSCGGGCCHHHHHHCCCCHH
T ss_pred             HHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEECCCccccccccccccc----cCCCcCCcccEECHHHhcCCCCCcH
Confidence             34788999999999999999999841 12359999999987553221000    0111234567888888877777778


Q ss_pred             CCHHHHHHHHHHHH
Q 004234          523 GDTTAVRRTAQFFL  536 (766)
Q Consensus       523 ~D~~~l~~~i~~~l  536 (766)
                      .|++++...+.+++
T Consensus       267 ~DvwslG~il~ell  280 (367)
T 3l9p_A          267 TDTWSFGVLLWEIF  280 (367)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            89999988776665

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.57  E-value=4.6e-15  Score=162.12  Aligned_cols=188  Identities=15%  Similarity=0.173  Sum_probs=127.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                     . ......        +      +
T Consensus        18 ~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~---------------------~-~~~~~~--------~------~   61 (361)
T 2yab_A           18 EELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRA---------------------S-RRGVCR--------E------E   61 (361)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTT---------------------C-SSSBCH--------H------H
T ss_pred             eEEeeCcCEEEEEEEECCCCCEEEEEEEEcccccc---------------------c-cchhHH--------H------H
Confidence            6899999999999999  59999999986543211                     0 000000        1      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|...+..+    . +++|.-..-+.+..+..++||||++|++|.++... ...++...+...+.+  ..+..+|..|
T Consensus        62 ~~~E~~il~~l----~-hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH~~g  135 (361)
T 2yab_A           62 IEREVSILRQV----L-HPNIITLHDVYENRTDVVLILELVSGGELFDFLAQ-KESLSEEEATSFIKQILDGVNYLHTKK  135 (361)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHTT-CSCCBHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CcCCCcEEEEEEeCCEEEEEEEcCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33444444333    2 33332222222345667999999999999987532 223455554444433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCC----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGG----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g----~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      ++|+|+||+||++..  ++    .++|+|||++..+.+...       .....+++.+++|++...+..+...|++++..
T Consensus       136 ivHrDlkp~NIll~~--~~~~~~~vkl~DFG~a~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGv  206 (361)
T 2yab_A          136 IAHFDLKPENIMLLD--KNIPIPHIKLIDFGLAHEIEDGVE-------FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGV  206 (361)
T ss_dssp             EECCCCSGGGEEESC--TTSSSCCEEECCCSSCEECCTTCC-------CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHH
T ss_pred             cccCCCCHHHEEEeC--CCCCccCEEEEecCCceEcCCCCc-------cccCCCCccEECchHHcCCCCCccccHHHHHH
Confidence            999999999999975  44    799999999998765321       11124788899999988766777789999998


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       207 il~~ll~  213 (361)
T 2yab_A          207 ITYILLS  213 (361)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8776654

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.57  E-value=6.5e-15  Score=152.40  Aligned_cols=191  Identities=17%  Similarity=0.106  Sum_probs=125.7

Q ss_pred             hhhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004234          291 DVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (766)
Q Consensus       291 eiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (766)
                      ++...|.. +.||+|++|+||+|+.  ++..||+|+..+.....                            .       
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~----------------------------~-------   50 (277)
T 3f3z_A            6 DINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVED----------------------------V-------   50 (277)
T ss_dssp             CHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSC----------------------------H-------
T ss_pred             hhhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccch----------------------------H-------
Confidence            34444543 6899999999999999  47899999874432211                            0       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--H
Q 004234          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--S  445 (766)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~  445 (766)
                             -.+.+|++.+.++     .++++.-..-+.......++||||++|++|.+.... ...++...+...+.+  .
T Consensus        51 -------~~~~~E~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~i~~~i~~  117 (277)
T 3f3z_A           51 -------DRFKQEIEIMKSL-----DHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVH-KRVFRESDAARIMKDVLS  117 (277)
T ss_dssp             -------HHHHHHHHHHHTC-----CCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH-HCSCCHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHhC-----CCCCEeeEEEEEecCCeEEEEEeccCCCcHHHHHHH-cCCCCHHHHHHHHHHHHH
Confidence                   0234455544443     223332222222344567999999999999886532 233455544444333  3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEee-cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~-~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D  524 (766)
                      .+..+|..|++|+|+||.||++.. ..++.++|+|||++..+.+....       ....+++.++++++.. |..++..|
T Consensus       118 ~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~-------~~~~~t~~y~aPE~~~-~~~~~~~D  189 (277)
T 3f3z_A          118 AVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMM-------RTKVGTPYYVSPQVLE-GLYGPECD  189 (277)
T ss_dssp             HHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCB-------CCCCSCTTTCCHHHHT-TCBCTTHH
T ss_pred             HHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccch-------hccCCCCCccChHHhc-ccCCchhh
Confidence            478899999999999999999932 13688999999999887653211       1123566777888765 45778889


Q ss_pred             HHHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFLN  537 (766)
Q Consensus       525 ~~~l~~~i~~~l~  537 (766)
                      ++++...+.+++.
T Consensus       190 i~slG~~l~~l~~  202 (277)
T 3f3z_A          190 EWSAGVMMYVLLC  202 (277)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             ehhHHHHHHHHHH
Confidence            9999987766653

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.57  E-value=1.6e-14  Score=150.71  Aligned_cols=200  Identities=14%  Similarity=0.099  Sum_probs=129.0

Q ss_pred             hhhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004234          291 DVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (766)
Q Consensus       291 eiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (766)
                      ..+..|.. +.||+|++|.||+|+.  +|+.||||+.++......                          . ..-..+.
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~--------------------------~-~~~~~~~   66 (298)
T 1phk_A           14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSF--------------------------S-AEEVQEL   66 (298)
T ss_dssp             -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTC--------------------------C-HHHHHHH
T ss_pred             chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEeccccccc--------------------------C-HHHHHHH
Confidence            34445544 7899999999999999  589999999865432110                          0 0001111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--H
Q 004234          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--S  445 (766)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~  445 (766)
                      .+      .+.+|.+.+.++.    +++++.-..-+.......++||||++|++|.++... ...++...+...+.+  .
T Consensus        67 ~~------~~~~e~~~l~~l~----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~  135 (298)
T 1phk_A           67 RE------ATLKEVDILRKVS----GHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTE-KVTLSEKETRKIMRALLE  135 (298)
T ss_dssp             HH------HHHHHHHHHHHHT----TCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHH
T ss_pred             HH------HHHHHHHHHHHhc----CCCCEeeeeeeeccCCeEEEEEeccCCCcHHHHHhc-cCCCCHHHHHHHHHHHHH
Confidence            22      2345555555543    233332222222345667999999999999987542 234555554444433  3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH------cCCC
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ------MGVL  519 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~------lG~~  519 (766)
                      .+..+|..|++|+|++|.||+++.  ++.++|+|||++..+.+....       ....+++.++++++..      .+..
T Consensus       136 ~l~~lH~~~i~H~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~~~  206 (298)
T 1phk_A          136 VICALHKLNIVHRDLKPENILLDD--DMNIKLTDFGFSCQLDPGEKL-------REVCGTPSYLAPEIIECSMNDNHPGY  206 (298)
T ss_dssp             HHHHHHHTTEECSCCSGGGEEECT--TCCEEECCCTTCEECCTTCCB-------CCCCSCGGGCCHHHHHHHHCTTSCCB
T ss_pred             HHHHHHHCCcccCCCCcceEEEcC--CCcEEEecccchhhcCCCccc-------ccccCCccccCHHHhccccccccccC
Confidence            478899999999999999999985  889999999999887653211       1123566677777765      2334


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 004234          520 VPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       520 ~~~~D~~~l~~~i~~~l~  537 (766)
                      +...|++++...+.+++.
T Consensus       207 ~~~~Di~slG~~l~~l~~  224 (298)
T 1phk_A          207 GKEVDMWSTGVIMYTLLA  224 (298)
T ss_dssp             CTHHHHHHHHHHHHHHHH
T ss_pred             CcccccHhHHHHHHHHHH
Confidence            566799999877766553

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.57  E-value=3.8e-15  Score=155.82  Aligned_cols=184  Identities=16%  Similarity=0.098  Sum_probs=119.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                  ...      -.
T Consensus         8 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~------~~   47 (292)
T 3o0g_A            8 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDE----------------------------------GVP------SS   47 (292)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEESSCSST----------------------------------THH------HH
T ss_pred             eEecCCCCeEEEEEEECCCCceEEEEeeeccCCcC----------------------------------Ccc------hH
Confidence            6799999999999999  59999999985432211                                  000      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|+..+.++    . ++++.-..-+....+..++||||++|..+..+.. ....++...+...+.+  ..+..+|..|
T Consensus        48 ~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~~~~-~~~~l~~~~~~~~~~ql~~~l~~lH~~~  121 (292)
T 3o0g_A           48 ALREICLLKEL----K-HKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDS-CNGDLDPEIVKSFLFQLLKGLGFCHSRN  121 (292)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcC----C-CCCEeeEEeEEEeCCEEEEEEecCCCCHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            23444444333    2 2333222222234566799999999854444332 2234555554444333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~-~~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||.||+++.  ++.++|+|||++..++.....      .....++..++++++...+. .+...|++++...+.
T Consensus       122 ivH~dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~  193 (292)
T 3o0g_A          122 VLHRDLKPQNLLINR--NGELKLANFGLARAFGIPVRC------YSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFA  193 (292)
T ss_dssp             EECCCCSGGGEEECT--TSCEEECCCTTCEECCSCCSC------CCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHH
T ss_pred             eecCCCCHHHEEEcC--CCCEEEeecccceecCCcccc------ccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHH
Confidence            999999999999986  889999999999877543211      01123467788888875443 566779999987776


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       194 ~l~  196 (292)
T 3o0g_A          194 ELA  196 (292)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            554

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.57  E-value=1e-14  Score=155.75  Aligned_cols=188  Identities=18%  Similarity=0.191  Sum_probs=125.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+.+......                           +             ....
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------~-------------~~~~   74 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQ---------------------------D-------------CRAE   74 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTE---------------------------E-------------CHHH
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcch---------------------------H-------------HHHH
Confidence            6899999999999998  59999999885432111                           0             0112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|...+..+.    +++++.-..-+.+.....++||||++|++|.++.... ...++...+...+.+  ..+..+|..
T Consensus        75 ~~~e~~~l~~l~----~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~  150 (327)
T 3lm5_A           75 ILHEIAVLELAK----SCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN  150 (327)
T ss_dssp             HHHHHHHHHHTT----TCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcc----CCCCEEEEEEEEEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            344444444432    3343332222334456679999999999998865322 233455555444433  347889999


Q ss_pred             CccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      |++|+|+||.||+++.. +++.++|+|||++..++.....       .-..+++.++++++...+..++..|++++...+
T Consensus       151 givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il  223 (327)
T 3lm5_A          151 NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACEL-------REIMGTPEYLAPEILNYDPITTATDMWNIGIIA  223 (327)
T ss_dssp             TEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC----------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHH
T ss_pred             CeecCcCChHHEEEecCCCCCcEEEeeCccccccCCcccc-------ccccCCcCccCCeeecCCCCCchhhHHHHHHHH
Confidence            99999999999999741 2578999999999988654321       113468888999998877777788999999877


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       224 ~~ll~  228 (327)
T 3lm5_A          224 YMLLT  228 (327)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66653

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.57  E-value=7.1e-15  Score=159.06  Aligned_cols=190  Identities=14%  Similarity=0.116  Sum_probs=124.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+..-..                ..  +     ..+              .-+
T Consensus        30 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----------------~~--~-----~~~--------------~~~   72 (351)
T 3c0i_A           30 EVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFT----------------SS--P-----GLS--------------TED   72 (351)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH----------------TS--S-----SCC--------------HHH
T ss_pred             eEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhcc----------------cc--c-----cch--------------HHH
Confidence            6899999999999998  5999999987321100                00  0     000              113


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhh-c--CCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-L--GVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-~--g~d~~~la~~lv~--~~l~qI  450 (766)
                      +.+|+..+..+    . +++| .+-.++ ......+|||||++|++|.+...... .  .++...+...+.+  ..+..+
T Consensus        73 ~~~E~~~l~~l----~-hpnIv~~~~~~-~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~l  146 (351)
T 3c0i_A           73 LKREASICHML----K-HPHIVELLETY-SSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYC  146 (351)
T ss_dssp             HHHHHHHHHHC----C-CTTBCCEEEEE-EETTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----C-CCCCCcEEEEE-EeCCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            44555555444    2 3333 222222 33566799999999999987543221 1  2444444333322  347889


Q ss_pred             HhCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      |..|++|+|+||.||+++.. .++.++|+|||++..+......      .....+++.++++++..-+..+...|++++.
T Consensus       147 H~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  220 (351)
T 3c0i_A          147 HDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLV------AGGRVGTPHFMAPEVVKREPYGKPVDVWGCG  220 (351)
T ss_dssp             HHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCB------CCCCCSCGGGCCHHHHTTCCBCTHHHHHHHH
T ss_pred             HHCCceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCee------ecCCcCCcCccCHHHHcCCCCCchHhhHHHH
Confidence            99999999999999999751 1235999999999887653210      1112467889999998877677788999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       221 ~il~~ll~  228 (351)
T 3c0i_A          221 VILFILLS  228 (351)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88776653

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.57  E-value=1.2e-14  Score=154.31  Aligned_cols=178  Identities=17%  Similarity=0.181  Sum_probs=120.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.++...+                                             +
T Consensus        42 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---------------------------------------------~   76 (330)
T 3nsz_A           42 RKLGRGKYSEVFEAINITNNEKVVVKILKPVKKK---------------------------------------------K   76 (330)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECSCCHH---------------------------------------------H
T ss_pred             EEecccCCeEEEEEEECCCCcEEEEEEecccchH---------------------------------------------H
Confidence            6899999999999988  6999999998543221                                             2


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeec-cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e-~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      +.+|++.+.++.    +++++ .+-.++.. .....+++|||++|.++.++..    .++...+...+.+  ..+..+|.
T Consensus        77 ~~~E~~~l~~l~----~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH~  148 (330)
T 3nsz_A           77 IKREIKILENLR----GGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ----TLTDYDIRFYMYEILKALDYCHS  148 (330)
T ss_dssp             HHHHHHHHHHHT----TSTTBCCEEEEEECTTTCCEEEEEECCCCCCHHHHGG----GCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC----CCCCEEEeeeeeccCCCCceEEEEeccCchhHHHHHH----hCCHHHHHHHHHHHHHHHHHHHh
Confidence            334444444443    22332 22222222 1445699999999999988642    1344444333332  34788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRT  531 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~  531 (766)
                      .|++|+|+||+||+++. +++.++|+|||++..+.+....       ....++..++++++... +..+...|++++...
T Consensus       149 ~~ivH~Dikp~Nil~~~-~~~~~kl~Dfg~a~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~i  220 (330)
T 3nsz_A          149 MGIMHRDVKPHNVMIDH-EHRKLRLIDWGLAEFYHPGQEY-------NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM  220 (330)
T ss_dssp             TTEECCCCSGGGEEEET-TTTEEEECCCTTCEECCTTCCC-------CSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHH
T ss_pred             CCeeeCCCCHHHEEEcC-CCCEEEEEeCCCceEcCCCCcc-------ccccccccccChhhhcCCCcCCchhhHHHHHHH
Confidence            99999999999999985 2348999999999877654321       11235666777777654 456667899999987


Q ss_pred             HHHHHH
Q 004234          532 AQFFLN  537 (766)
Q Consensus       532 i~~~l~  537 (766)
                      +.+++.
T Consensus       221 l~~ll~  226 (330)
T 3nsz_A          221 LASMIF  226 (330)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            776653

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.57  E-value=6.7e-15  Score=160.91  Aligned_cols=197  Identities=14%  Similarity=0.135  Sum_probs=114.5

Q ss_pred             hhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004234          292 VFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (766)
Q Consensus       292 iF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (766)
                      +...|.. +.||+|++|.||+|+.  +|+.||||+........                                  .  
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~----------------------------------~--   50 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNS----------------------------------T--   50 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCH----------------------------------H--
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccCh----------------------------------H--
Confidence            3445544 7899999999999998  69999999874322111                                  0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HH
Q 004234          369 SVLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VE  444 (766)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~  444 (766)
                          ..-.+.+|...+..+.    ++++| .+-.++..- ....+|||||++| .|.++..  ...++.......+  +-
T Consensus        51 ----~~~~~~~E~~~l~~l~----~h~niv~l~~~~~~~~~~~~~lv~e~~~~-~L~~~~~--~~~~~~~~~~~i~~qi~  119 (388)
T 3oz6_A           51 ----DAQRTFREIMILTELS----GHENIVNLLNVLRADNDRDVYLVFDYMET-DLHAVIR--ANILEPVHKQYVVYQLI  119 (388)
T ss_dssp             ----HHHHHHHHHHHHHHTT----TCTTBCCEEEEEECTTSSCEEEEEECCSE-EHHHHHH--HTCCCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhcc----CCCCCCeeeeEEecCCCCEEEEEecccCc-CHHHHHH--cCCCCHHHHHHHHHHHH
Confidence                0012233444444332    23332 233333221 2356999999996 6666543  2234444433333  22


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhH-------------HH--HHHHHHHHhhcCHHHH
Q 004234          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR-------------EG--LLEAFYGIYEKDADKV  509 (766)
Q Consensus       445 ~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r-------------~~--l~~l~~a~~~~D~~~v  509 (766)
                      ..++.+|..|++|+|+||+||+++.  ++.++|+|||++..+....+             ..  -......-..+++.++
T Consensus       120 ~~L~~LH~~~ivHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~  197 (388)
T 3oz6_A          120 KVIKYLHSGGLLHRDMKPSNILLNA--ECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYR  197 (388)
T ss_dssp             HHHHHHHHTTEECCCCCGGGEEECT--TCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGC
T ss_pred             HHHHHHHhCCEEeCCCCHHHeEEcC--CCCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcC
Confidence            3478899999999999999999985  89999999999987643100             00  0011122234677788


Q ss_pred             HHHHHHc-CCCCCCCCHHHHHHHHHHHHH
Q 004234          510 LQAMVQM-GVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       510 ~~~l~~l-G~~~~~~D~~~l~~~i~~~l~  537 (766)
                      ++++..- ...+...|++++...+.+++.
T Consensus       198 aPE~~~~~~~~~~~~DiwSlG~il~ell~  226 (388)
T 3oz6_A          198 APEILLGSTKYTKGIDMWSLGCILGEILC  226 (388)
T ss_dssp             CHHHHTTCCCCCTHHHHHHHHHHHHHHHH
T ss_pred             CHHHhcCCCCCCChhhHHHHHHHHHHHHh
Confidence            8888754 445667899999988777664

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.57  E-value=7.8e-15  Score=164.55  Aligned_cols=182  Identities=15%  Similarity=0.117  Sum_probs=122.6

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|++|.||+|++ .+..||||+.+++....                                           -+|
T Consensus       190 ~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~-------------------------------------------~~~  226 (452)
T 1fmk_A          190 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-------------------------------------------EAF  226 (452)
T ss_dssp             EEEEECSSCEEEEEEETTTEEEEEEECCTTSSCH-------------------------------------------HHH
T ss_pred             eeecCCCCeEEEEEEECCCceEEEEEeccCCCCH-------------------------------------------HHH
Confidence            6799999999999999 46789999986542110                                           135


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      .+|++.+.++.    +..-+.+-.++.  ....++||||++|++|.++.... ...++...+...+.+  ..+..+|..|
T Consensus       227 ~~E~~~l~~l~----hp~iv~~~~~~~--~~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~  300 (452)
T 1fmk_A          227 LQEAQVMKKLR----HEKLVQLYAVVS--EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN  300 (452)
T ss_dssp             HHHHHHHHHCC----CTTBCCEEEEEC--SSSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCC----CCCEeeEEEEEc--CCceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            66777666652    222222222222  25679999999999999976432 223555555444433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  ++.++|+|||++..+.......     .........+++++....+..+...|++++...+.+
T Consensus       301 ivHrDlkp~Nill~~--~~~~kl~DfG~a~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~e  373 (452)
T 1fmk_A          301 YVHRDLRAANILVGE--NLVCKVADFGLARLIEDNEYTA-----RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE  373 (452)
T ss_dssp             CCCSCCSGGGEEECG--GGCEEECCCCTTC-------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             eeCCCCChhhEEECC--CCCEEECCCccceecCCCceec-----ccCCcccccccCHhHHhcCCCCccccHHhHHHHHHH
Confidence            999999999999986  7899999999998876432111     111234567888888887777778899999887766


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       374 l~  375 (452)
T 1fmk_A          374 LT  375 (452)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.56  E-value=8.9e-15  Score=159.95  Aligned_cols=187  Identities=14%  Similarity=0.085  Sum_probs=124.4

Q ss_pred             ccccccceeEEEEEeec---------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~---------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      +.||+|++|.||+|+..         ++.||||+.++.....                                      
T Consensus        75 ~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~--------------------------------------  116 (382)
T 3tt0_A           75 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK--------------------------------------  116 (382)
T ss_dssp             EEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHH--------------------------------------
T ss_pred             eEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHH--------------------------------------
Confidence            68999999999999962         3689999986542211                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCC
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVD  434 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d  434 (766)
                         ..-++.+|++.+.++.    .+++|.-..-+....+..++||||++|++|.++.....               ..++
T Consensus       117 ---~~~~~~~E~~~l~~l~----~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~  189 (382)
T 3tt0_A          117 ---DLSDLISEMEMMKMIG----KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLS  189 (382)
T ss_dssp             ---HHHHHHHHHHHHHHHC----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCC
T ss_pred             ---HHHHHHHHHHHHHHhc----CCchhhhheeeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccC
Confidence               0113445555555542    23333222222233456799999999999999764322               1245


Q ss_pred             HHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004234          435 RKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  512 (766)
Q Consensus       435 ~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~  512 (766)
                      ...+...+.+  ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .....+.+.+++++
T Consensus       190 ~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~--~~~~kL~DFG~a~~~~~~~~~~~----~~~~~~t~~y~aPE  263 (382)
T 3tt0_A          190 SKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTE--DNVMKIADFGLARDIHHIDYYKK----TTNGRLPVKWMAPE  263 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECT--TCCEEECSCSCCCCSSCCCTTCC----CTTCCCGGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCEecCCCCcceEEEcC--CCcEEEcccCccccccccccccc----ccCCCCCcceeCHH
Confidence            5555444433  3478899999999999999999985  88999999999987654221100    00112345678888


Q ss_pred             HHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          513 MVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       513 l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +..-+..++..|++++...+.+++
T Consensus       264 ~~~~~~~~~~~DiwslG~il~ell  287 (382)
T 3tt0_A          264 ALFDRIYTHQSDVWSFGVLLWEIF  287 (382)
T ss_dssp             HHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCchhHHHHHHHHHHHHH
Confidence            887776777789999988776654

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.56  E-value=1.3e-14  Score=152.96  Aligned_cols=191  Identities=15%  Similarity=0.083  Sum_probs=118.1

Q ss_pred             cccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      .+.||.|++|+||+|+.  +|+.||||+.+......                                          .-
T Consensus        18 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~------------------------------------------~~   55 (316)
T 2ac3_A           18 EDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHI------------------------------------------RS   55 (316)
T ss_dssp             CCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCC------------------------------------------HH
T ss_pred             CceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchh------------------------------------------HH
Confidence            36799999999999998  69999999985331110                                          01


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      .+.+|++.+.++    ..+++|.-..-+.......++||||++|++|.++.... ..++...+...+.+  ..+..+|..
T Consensus        56 ~~~~E~~~l~~~----~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH~~  130 (316)
T 2ac3_A           56 RVFREVEMLYQC----QGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKR-RHFNELEASVVVQDVASALDFLHNK  130 (316)
T ss_dssp             HHHHHHHHHHHT----CCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh----cCCCCeeeEEEEEeeCCEEEEEEEcCCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            233344433332    12343322222223356779999999999999875432 23454444433322  347889999


Q ss_pred             CccccCCCCCcEEEeecCCC---cEEEEeecceeccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCC
Q 004234          454 GFFHADPHPGNIAVDDVNGG---RLIFYDFGMMGSISPNIREG-LLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGD  524 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g---~l~LiDFGlv~~L~~~~r~~-l~~l~~a~~~~D~~~v~~~l~~l-----G~~~~~~D  524 (766)
                      |++|+|+||.||+++.  ++   .++|+|||++..+....... ..........++..++++++...     +..+...|
T Consensus       131 ~ivH~dlkp~Nil~~~--~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~D  208 (316)
T 2ac3_A          131 GIAHRDLKPENILCEH--PNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCD  208 (316)
T ss_dssp             TCCCCCCCGGGEEESC--SSSSCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHH
T ss_pred             CceeCCCCHHHEEEcc--CCCcCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccc
Confidence            9999999999999985  44   39999999998765322111 00001111236777888887753     44567789


Q ss_pred             HHHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFLN  537 (766)
Q Consensus       525 ~~~l~~~i~~~l~  537 (766)
                      ++++...+.+++.
T Consensus       209 iwslG~il~~l~~  221 (316)
T 2ac3_A          209 LWSLGVILYILLS  221 (316)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHhHHHHHHHHHH
Confidence            9999988777654

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.56  E-value=2.2e-15  Score=165.49  Aligned_cols=191  Identities=18%  Similarity=0.144  Sum_probs=121.2

Q ss_pred             ccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +|+. +.||.|++|+||+|+.  +|+.||||+.+......-.                                      
T Consensus        39 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~--------------------------------------   80 (373)
T 2r5t_A           39 DFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKK--------------------------------------   80 (373)
T ss_dssp             GEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-----------------------------------------
T ss_pred             heEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhH--------------------------------------
Confidence            4443 7899999999999999  5899999998543211100                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQ  449 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~q  449 (766)
                       .+..+..|...   +.... ++++|.-..-+.......+|||||++|++|.+.... ...++...+...+.  -..+..
T Consensus        81 -~~~~~~~e~~~---ll~~~-~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~  154 (373)
T 2r5t_A           81 -EEKHIMSERNV---LLKNV-KHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQR-ERCFLEPRARFYAAEIASALGY  154 (373)
T ss_dssp             -----------C---CBCCC-CCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHH---HHHhC-CCCCCCCEEEEEEeCCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHH
Confidence             00011111110   00111 233332222222334567999999999999886532 22344444333332  334788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|+|+||+||+++.  +|.++|+|||++.........      .....+++.++++++..-...+...|++++.
T Consensus       155 LH~~givHrDlkp~NIll~~--~g~ikL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  226 (373)
T 2r5t_A          155 LHSLNIVYRDLKPENILLDS--QGHIVLTDFGLCKENIEHNST------TSTFCGTPEYLAPEVLHKQPYDRTVDWWCLG  226 (373)
T ss_dssp             HHHTTCCCCCCCGGGEEECT--TSCEEECCCCBCGGGBCCCCC------CCSBSCCCCCCCHHHHTTCCCCTHHHHHHHH
T ss_pred             HHHCCceecCCCHHHEEECC--CCCEEEeeCccccccccCCCc------cccccCCccccCHHHhCCCCCCchhhhHHHH
Confidence            99999999999999999985  899999999999763221110      1123467788999988776667778999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       227 ~il~ell~  234 (373)
T 2r5t_A          227 AVLYEMLY  234 (373)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            88777653

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.56  E-value=5.3e-15  Score=153.19  Aligned_cols=182  Identities=16%  Similarity=0.160  Sum_probs=123.3

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|++|+||+|+. +++.||||+.+++....                                           -++
T Consensus        19 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~-------------------------------------------~~~   55 (279)
T 1qpc_A           19 ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSP-------------------------------------------DAF   55 (279)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECTTSSCH-------------------------------------------HHH
T ss_pred             eeecCCCCeEEEEEEEcCCcEEEEEEecCCcccH-------------------------------------------HHH
Confidence            6899999999999999 57899999885432110                                           024


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      .+|++.+..+    .+..-+.+..++  .....+++|||++|++|.++.... ...++...+...+.+  ..+..+|..|
T Consensus        56 ~~E~~~l~~l----~h~~i~~~~~~~--~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~  129 (279)
T 1qpc_A           56 LAEANLMKQL----QHQRLVRLYAVV--TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN  129 (279)
T ss_dssp             HHHHHHHHHC----CCTTBCCEEEEE--CSSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhC----CCcCcceEEEEE--cCCCcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            4555555544    222222222222  245679999999999999875432 124555555444433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  ++.++|+|||++..+.......     .........+++++....+..++..|++++...+.+
T Consensus       130 i~H~dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e  202 (279)
T 1qpc_A          130 YIHRDLRAANILVSD--TLSCKIADFGLARLIEDNEYTA-----REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTE  202 (279)
T ss_dssp             EECSCCSGGGEEECT--TSCEEECCCTTCEECSSSCEEC-----CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHH
T ss_pred             eeccCCCHhhEEEcC--CCCEEECCCcccccccCccccc-----ccCCCCccCccChhhhccCCCCchhhhHHHHHHHHH
Confidence            999999999999985  8899999999998875432110     001123456777888777766777899999877766


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       203 l~  204 (279)
T 1qpc_A          203 IV  204 (279)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.56  E-value=9.6e-15  Score=157.03  Aligned_cols=186  Identities=16%  Similarity=0.172  Sum_probs=118.5

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|++|.||+|.. +|+.||||+.+......                                  +.      .-.+
T Consensus        15 ~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~----------------------------------~~------~~~~   54 (343)
T 3dbq_A           15 KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN----------------------------------QT------LDSY   54 (343)
T ss_dssp             EEESCCSSEEEEEEECTTSCEEEEEEEECTTCCH----------------------------------HH------HHHH
T ss_pred             EEEecCCCeEEEEEEeCCCCEEEEEEeeccccch----------------------------------HH------HHHH
Confidence            6899999999999999 79999999885432111                                  00      0134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      .+|+..+.++.+   +.+++.-..-+.......+||||+ .|++|.++... ...++...+...+.+  ..+..+|..|+
T Consensus        55 ~~E~~~l~~l~~---~~~~iv~~~~~~~~~~~~~lv~e~-~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~al~~lH~~~i  129 (343)
T 3dbq_A           55 RNEIAYLNKLQQ---HSDKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGI  129 (343)
T ss_dssp             HHHHHHHHHHTT---TCTTBCCEEEEEECSSEEEEEECC-CSEEHHHHHHH-SCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhh---cCCceEEEeeeEeeCCEEEEEEeC-CCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            556666666543   123332222233344567999994 66788886542 233455444433322  34788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----------CCCCCCCC
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----------GVLVPTGD  524 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-----------G~~~~~~D  524 (766)
                      +|+|+||.||+++   ++.++|+|||++..+.+.......    ....+++.++++++..-           +..++..|
T Consensus       130 iHrDikp~NIll~---~~~~kl~DFG~a~~~~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~D  202 (343)
T 3dbq_A          130 VHSDLKPANFLIV---DGMLKLIDFGIANQMQPDTTSVVK----DSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSD  202 (343)
T ss_dssp             CCCCCCGGGEEEE---TTEEEECCCSSSCCC----------------CCCCSSCCHHHHHHCC-----------CCHHHH
T ss_pred             ecCCCCcceEEEE---CCcEEEeecccccccCcccccccC----CCCcCCcCcCCHHHHhhccccccccccccCCCchhh
Confidence            9999999999996   688999999999988654332211    12346777888888753           44556679


Q ss_pred             HHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFL  536 (766)
Q Consensus       525 ~~~l~~~i~~~l  536 (766)
                      ++++...+.+++
T Consensus       203 iwslG~il~ell  214 (343)
T 3dbq_A          203 VWSLGCILYYMT  214 (343)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988776665

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.56  E-value=6.3e-15  Score=167.51  Aligned_cols=190  Identities=15%  Similarity=0.130  Sum_probs=129.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+........                                            +
T Consensus        13 ~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~--------------------------------------------~   48 (483)
T 3sv0_A           13 RKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHP--------------------------------------------Q   48 (483)
T ss_dssp             CCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSC--------------------------------------------C
T ss_pred             EEEeeCCCEEEEEEEECCCCcEEEEEEeccccccH--------------------------------------------H
Confidence            6899999999999998  59999999864321110                                            1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~--~l~qI~~~G  454 (766)
                      +..|.+.+..+    .+.+.+.....+.......+|||||+ |++|.++.......++...+...+.+.  .+..+|..|
T Consensus        49 ~~~E~~il~~L----~~~~~i~~i~~~~~~~~~~~lvme~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~g  123 (483)
T 3sv0_A           49 LLYESKIYRIL----QGGTGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKS  123 (483)
T ss_dssp             HHHHHHHHHHT----TTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHh----cCCCCCCeEEEEEeeCCEEEEEEECC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            23344444333    33344444455555567789999999 889999765444456666655554443  488899999


Q ss_pred             ccccCCCCCcEEEee-cCCCcEEEEeecceeccChhhHHHHHHH-HHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEA-FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       455 ffHaDpHPGNILV~~-~~~g~l~LiDFGlv~~L~~~~r~~l~~l-~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      ++|+|+||.|||+.. ..++.++|+|||++..+........... ......++..++++++..-+..+...|+++|...+
T Consensus       124 IvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil  203 (483)
T 3sv0_A          124 FLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVL  203 (483)
T ss_dssp             EECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             EeecccCcceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHH
Confidence            999999999999941 1378999999999987755321100000 00013467778888888766666778999999887


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       204 ~ellt  208 (483)
T 3sv0_A          204 MYFLR  208 (483)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77664

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.56  E-value=4.3e-15  Score=154.40  Aligned_cols=183  Identities=14%  Similarity=0.052  Sum_probs=124.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|++  +|+.||||+.+++...                                           .-+
T Consensus        19 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-------------------------------------------~~~   55 (288)
T 3kfa_A           19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-------------------------------------------VEE   55 (288)
T ss_dssp             EESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTH-------------------------------------------HHH
T ss_pred             eecCCCCceeEEEeEecCCCEEEEEEecCcCHHH-------------------------------------------HHH
Confidence            6899999999999999  4899999988543211                                           012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAV--ESYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~lv--~~~l~qI~~~  453 (766)
                      +.+|++.+.++.     ++++.-..-+.......++||||++|++|.++... ....++...+...+.  -..+..+|..
T Consensus        56 ~~~E~~~l~~l~-----h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~  130 (288)
T 3kfa_A           56 FLKEAAVMKEIK-----HPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK  130 (288)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-----CCCEeeEEEEEccCCCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC
Confidence            445555555442     23332222222345567999999999999987543 222345554444333  2347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||.||+++.  ++.++|+|||++..++......     ......++.+++++....+..++..|++++...+.
T Consensus       131 ~i~H~dikp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  203 (288)
T 3kfa_A          131 NFIHRDLAARNCLVGE--NHLVKVADFGLSRLMTGDTYTA-----HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLW  203 (288)
T ss_dssp             TCCCSCCSGGGEEECG--GGCEEECCCCGGGTSCSSSSEE-----ETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CccCCCCCcceEEEcC--CCCEEEccCccceeccCCcccc-----ccCCccccCcCChhhhccCCCCchhhHHHHHHHHH
Confidence            9999999999999986  7899999999998776432111     01122345677888877776677789999988776


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       204 ~ll  206 (288)
T 3kfa_A          204 EIA  206 (288)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            655

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.56  E-value=7.9e-15  Score=155.24  Aligned_cols=195  Identities=17%  Similarity=0.133  Sum_probs=118.7

Q ss_pred             hhhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004234          291 DVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (766)
Q Consensus       291 eiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (766)
                      ..+..|.. +.||+|++|+||+|+.  +|+.||||+.++.....                                 .+.
T Consensus        31 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~   77 (309)
T 2h34_A           31 TQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSD---------------------------------PVF   77 (309)
T ss_dssp             ---CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGS---------------------------------HHH
T ss_pred             cEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccC---------------------------------HHH
Confidence            33445543 7899999999999998  59999999985432211                                 011


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--H
Q 004234          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--S  445 (766)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~  445 (766)
                      .+      .+.+|+..+.++    . ++++.-..-+....+..+++|||++|++|.++... ...++...+...+.+  .
T Consensus        78 ~~------~~~~e~~~l~~l----~-hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~  145 (309)
T 2h34_A           78 RT------RMQREARTAGRL----Q-EPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRR-QGPLAPPRAVAIVRQIGS  145 (309)
T ss_dssp             HH------HHHHHHHHHTTC----C-CTTBCCEEEEEEETTEEEEEEECCCCEEHHHHHHH-HCSCCHHHHHHHHHHHHH
T ss_pred             HH------HHHHHHHHHhhc----C-CCCeeEEEEEEeeCCeEEEEEEecCCCCHHHHHHh-cCCCCHHHHHHHHHHHHH
Confidence            11      233444444333    2 23332222222345677999999999999987542 223555554444333  3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~  525 (766)
                      .+..+|..|++|+|+||.||+++.  ++.++|+|||++...........     ....++..++++++..-+..+...|+
T Consensus       146 ~l~~lH~~~i~H~dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di  218 (309)
T 2h34_A          146 ALDAAHAAGATHRDVKPENILVSA--DDFAYLVDFGIASATTDEKLTQL-----GNTVGTLYYMAPERFSESHATYRADI  218 (309)
T ss_dssp             HHHHHHHTTCCCSCCCGGGEEECT--TSCEEECSCCC---------------------CCGGGCCGGGTCC----CCCHH
T ss_pred             HHHHHHHCcCCcCCCChHHEEEcC--CCCEEEecCccCccccccccccc-----cccCCCcCccCHHHHcCCCCCchHhH
Confidence            478899999999999999999985  88999999999987765432221     11235667777877766666778899


Q ss_pred             HHHHHHHHHHHH
Q 004234          526 TAVRRTAQFFLN  537 (766)
Q Consensus       526 ~~l~~~i~~~l~  537 (766)
                      +++...+.+++.
T Consensus       219 ~slG~il~~l~~  230 (309)
T 2h34_A          219 YALTCVLYECLT  230 (309)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999987766653

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.56  E-value=3.7e-15  Score=160.73  Aligned_cols=182  Identities=15%  Similarity=0.162  Sum_probs=121.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||+|+.+......                                   ...      .
T Consensus        39 ~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~-----------------------------------~~~------~   77 (360)
T 3eqc_A           39 SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPA-----------------------------------IRN------Q   77 (360)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHH-----------------------------------HHH------H
T ss_pred             eeecCCCCeEEEEEEECCCCcEEEEEEeccccCHH-----------------------------------HHH------H
Confidence            6899999999999999  59999999986543211                                   011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh-C
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS-H  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~-~  453 (766)
                      +.+|++.+..+    . ++++.-..-+....+..++||||++|++|.++.... ..++...+...+.+  ..+..+|. +
T Consensus        78 ~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~  151 (360)
T 3eqc_A           78 IIRELQVLHEC----N-SPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVIKGLTYLREKH  151 (360)
T ss_dssp             HHHHHGGGGGC----C-CTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC----C-CCCEEEEeEEEEECCEEEEEEECCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            33344333322    2 233322222223356679999999999999875422 23444444333332  34677887 4


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||+||+++.  ++.++|+|||++..+......        ...+++.++++++...+..+...|++++...+.
T Consensus       152 ~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~--------~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~  221 (360)
T 3eqc_A          152 KIMHRDVKPSNILVNS--RGEIKLCDFGVSGQLIDSMAN--------SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV  221 (360)
T ss_dssp             CCCCSCCSGGGEEECT--TCCEEECCCCCCHHHHHHC------------CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred             CEEcCCccHHHEEECC--CCCEEEEECCCCccccccccc--------CCCCCCCeECHHHHcCCCCCchhhHHHHHHHHH
Confidence            9999999999999985  889999999998765433211        124677788888887666667789999988777


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       222 ~l~~  225 (360)
T 3eqc_A          222 EMAV  225 (360)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7653

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.56  E-value=7.4e-15  Score=153.58  Aligned_cols=184  Identities=13%  Similarity=0.126  Sum_probs=112.3

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||+|++|.||+|++.+ .||||+.+......                                  ..      .-.|.
T Consensus        30 ~~lG~G~~g~Vy~~~~~~-~vavK~~~~~~~~~----------------------------------~~------~~~~~   68 (289)
T 3og7_A           30 QRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTP----------------------------------QQ------LQAFK   68 (289)
T ss_dssp             EEEEECSSEEEEEEESSS-EEEEEEESCSSCCH----------------------------------HH------HHHHH
T ss_pred             eEecCCCCeEEEEEEEcC-ceEEEEEeccCCCH----------------------------------HH------HHHHH
Confidence            689999999999999865 49999985432211                                  00      01234


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeee-ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~-e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      +|+..+..+    . ++++  ..++. ......+++|||++|++|.+........++...+...+.+  ..+..+|..|+
T Consensus        69 ~E~~~l~~l----~-h~~i--v~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i  141 (289)
T 3og7_A           69 NEVGVLRKT----R-HVNI--LLFMGYSTAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSI  141 (289)
T ss_dssp             HHHHHHTTC----C-CTTB--CCEEEEECSSSCEEEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhC----C-CCcE--EEEEeeccCCccEEEEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            455444433    2 2333  23332 2345679999999999998876444444565555444433  34788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCCHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~---lG~~~~~~D~~~l~~~i  532 (766)
                      +|+|+||.||+++.  ++.++|+|||++...+.......    .....+++.++++++..   .+..+...|++++...+
T Consensus       142 ~H~Dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il  215 (289)
T 3og7_A          142 IHRDLKSNNIFLHE--DNTVKIGDFGLATEKSRWSGSHQ----FEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVL  215 (289)
T ss_dssp             CCSCCCGGGEEEET--TTEEEECCCC----------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHH
T ss_pred             ccccCccceEEECC--CCCEEEccceecccccccccccc----ccccCCCccccCchhhcccCCCCCCcccchHHHHHHH
Confidence            99999999999986  89999999999987654222111    11224577788888775   33344467889888777


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       216 ~el~  219 (289)
T 3og7_A          216 YELM  219 (289)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.56  E-value=4.4e-15  Score=155.18  Aligned_cols=185  Identities=17%  Similarity=0.122  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|++|+||+|+. +|+.||||+.+......                    .      ..        .      .+
T Consensus         8 ~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~--------------------~------~~--------~------~~   47 (288)
T 1ob3_A            8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDE--------------------G------IP--------S------TT   47 (288)
T ss_dssp             EEEEEETTEEEEEEEETTSCEEEEEEECCSSGGG--------------------C------CC--------H------HH
T ss_pred             hhcccCCCEEEEEEEcCCCCEEEEEEEecccccc--------------------c------cc--------h------hH
Confidence            6799999999999999 69999999885432111                    0      00        0      12


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      .+|++.+.++    . +++|.-..-+....+..++||||++| ++.++......+++...+...+.+  ..+..+|..|+
T Consensus        48 ~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  121 (288)
T 1ob3_A           48 IREISILKEL----K-HSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRV  121 (288)
T ss_dssp             HHHHHGGGGC----C-CTTBCCEEEEEECSSCEEEEEECCSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhc----C-CCCEeeeeeEEccCCeEEEEEEecCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            3344333332    2 23332222222335677999999998 777765433344555544444333  34788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i~~  534 (766)
                      +|+|+||+||+++.  ++.++|+|||++..+.......      ....+++.++++++..- ...+...|++++...+.+
T Consensus       122 ~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~  193 (288)
T 1ob3_A          122 LHRDLKPQNLLINR--EGELKIADFGLARAFGIPVRKY------THEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAE  193 (288)
T ss_dssp             CCSCCCGGGEEECT--TSCEEECCTTHHHHHCC---------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHEEEcC--CCCEEEeECccccccCcccccc------ccccccccccCchheeCCCCCCcHHHHHHHHHHHHH
Confidence            99999999999985  8999999999998765432211      11234667788887753 335667799999887766


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       194 l~~  196 (288)
T 1ob3_A          194 MVN  196 (288)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.56  E-value=8.5e-15  Score=153.21  Aligned_cols=183  Identities=16%  Similarity=0.156  Sum_probs=119.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||+|+..+.....                            .              -+
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~----------------------------~--------------~~   62 (302)
T 2j7t_A           25 GELGDGAFGKVYKAKNKETGALAAAKVIETKSEEE----------------------------L--------------ED   62 (302)
T ss_dssp             EEEECSTTCCEEEEEETTTCCEEEEEEEC----CC----------------------------H--------------HH
T ss_pred             ceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHH----------------------------H--------------HH
Confidence            5799999999999999  48999999874431111                            0              13


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+..+     .++++.-..-+.......++||||++|++|.++.......++...+...+.+  ..+..+|..|
T Consensus        63 ~~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~  137 (302)
T 2j7t_A           63 YIVEIEILATC-----DHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKR  137 (302)
T ss_dssp             HHHHHHHHHHC-----CCTTBCCEEEEEECC-CEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcC-----CCCCEeeeeeeeeeCCeEEEEEEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            44455555443     2333322222223356789999999999999875443445665555544433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCCCCCCCCHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGVLVPTGDTTAVR  529 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~-----lG~~~~~~D~~~l~  529 (766)
                      ++|+|+||.||+++.  ++.++|+|||++.........      .....++..++++++..     -+..+...|++++.
T Consensus       138 i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG  209 (302)
T 2j7t_A          138 IIHRDLKAGNVLMTL--EGDIRLADFGVSAKNLKTLQK------RDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLG  209 (302)
T ss_dssp             CCCCCCSGGGEEECT--TSCEEECCCHHHHHHHHHHHC-----------CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHH
T ss_pred             cccCCCCHHHEEECC--CCCEEEEECCCCccccccccc------cccccCChhhcCCeeeccccCCCCCCchhhhHHHHH
Confidence            999999999999985  889999999987643222111      01123566677777763     34455667999998


Q ss_pred             HHHHHHH
Q 004234          530 RTAQFFL  536 (766)
Q Consensus       530 ~~i~~~l  536 (766)
                      ..+.+++
T Consensus       210 ~il~~l~  216 (302)
T 2j7t_A          210 ITLIEMA  216 (302)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8776654

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.56  E-value=1.9e-15  Score=161.18  Aligned_cols=124  Identities=13%  Similarity=0.159  Sum_probs=89.5

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004234          407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (766)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (766)
                      ....++||||++|++|.+........++...+...+  +...+..+|..|++|+|+||+||+++.  +++++|+|||++.
T Consensus        86 ~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~--~~~~kl~Dfg~a~  163 (325)
T 3kex_A           86 GSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKS--PSQVQVADFGVAD  163 (325)
T ss_dssp             BSSEEEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESS--SSCEEECSCSGGG
T ss_pred             CCccEEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECC--CCeEEECCCCccc
Confidence            456789999999999988654332334444433333  334588899999999999999999985  8899999999999


Q ss_pred             ccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          485 SISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       485 ~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      .+.........    ....+...+++++....+..++..|++++...+.+++
T Consensus       164 ~~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~  211 (325)
T 3kex_A          164 LLPPDDKQLLY----SEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELM  211 (325)
T ss_dssp             GSCCCTTCCC---------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             ccCcccccccc----cCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHH
Confidence            87654332111    1123456788888888777777889999998776655

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.56  E-value=8.6e-15  Score=158.63  Aligned_cols=185  Identities=11%  Similarity=0.034  Sum_probs=125.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.+..-.                                     ..      -.
T Consensus        43 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------------------------------------~~------~~   79 (397)
T 1wak_A           43 RKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEH-------------------------------------YT------ET   79 (397)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSCHH-------------------------------------HH------HH
T ss_pred             EEeeecCCeeEEEEEecCCCeEEEEEEEecCCc-------------------------------------ch------HH
Confidence            6799999999999998  599999999853210                                     00      12


Q ss_pred             HHHHHHHHHHHHHhcCCCC-ccccceeeecc------CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHH
Q 004234          377 YTQEAANAELFASNFKDMD-YVKVPTIFWEY------TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~-~V~vP~v~~e~------st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l  447 (766)
                      +.+|++.+..+++.....+ ...+.+++..+      ....+|||||+.|..+..+......+++...+...+.+  ..+
T Consensus        80 ~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL  159 (397)
T 1wak_A           80 ALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGL  159 (397)
T ss_dssp             HHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Confidence            3455666666654322211 22344444332      24579999999766555554333234565555444433  347


Q ss_pred             HHHHhC-CccccCCCCCcEEEeecCCC-------------------------------------------------cEEE
Q 004234          448 EQILSH-GFFHADPHPGNIAVDDVNGG-------------------------------------------------RLIF  477 (766)
Q Consensus       448 ~qI~~~-GffHaDpHPGNILV~~~~~g-------------------------------------------------~l~L  477 (766)
                      ..+|.. |++|+|+||+||+++.  ++                                                 .++|
T Consensus       160 ~~lH~~~givHrDikp~NIll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl  237 (397)
T 1wak_A          160 DYLHTKCRIIHTDIKPENILLSV--NEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKI  237 (397)
T ss_dssp             HHHHHTTCEECCCCSGGGEEECC--CHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEE
T ss_pred             HHHHHhCCEecCCCCHHHeeEec--cchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEe
Confidence            889998 9999999999999975  33                                                 7999


Q ss_pred             EeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          478 YDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       478 iDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      +|||++..+......         ..++..++++++..-+..+...|++++...+.+++.
T Consensus       238 ~DfG~a~~~~~~~~~---------~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ellt  288 (397)
T 1wak_A          238 ADLGNACWVHKHFTE---------DIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELAT  288 (397)
T ss_dssp             CCGGGCEETTBCSCS---------CCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCcc---------CCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhh
Confidence            999999887654221         245778889998887767778899999988776654

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.56  E-value=3.9e-15  Score=157.43  Aligned_cols=187  Identities=16%  Similarity=0.085  Sum_probs=123.4

Q ss_pred             ccccccceeEEEEEeec-------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|++|.||+|+..       ++.||||+.+......                                        
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------------   70 (322)
T 1p4o_A           31 RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR----------------------------------------   70 (322)
T ss_dssp             EEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHH----------------------------------------
T ss_pred             eEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHH----------------------------------------
Confidence            68999999999999863       6889999874321110                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------cCCCHHHHHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------LGVDRKRLGRYA  442 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------~g~d~~~la~~l  442 (766)
                       ...++.+|++.+..+    . ++++.-..-+.......++||||++|++|.++.....         ...+...+...+
T Consensus        71 -~~~~~~~E~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~  144 (322)
T 1p4o_A           71 -ERIEFLNEASVMKEF----N-CHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMA  144 (322)
T ss_dssp             -HHHHHHHHHHHGGGC----C-CTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhc----C-CCCEeeeEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHH
Confidence             112345555544443    2 2333222222233456799999999999998754211         123444444433


Q ss_pred             HH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004234          443 VE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (766)
Q Consensus       443 v~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~  520 (766)
                      .+  ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .....+++.+++++....+..+
T Consensus       145 ~qi~~~l~~lH~~~i~H~dikp~NIli~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~  218 (322)
T 1p4o_A          145 GEIADGMAYLNANKFVHRDLAARNCMVAE--DFTVKIGDFGMTRDIYETDYYRK----GGKGLLPVRWMSPESLKDGVFT  218 (322)
T ss_dssp             HHHHHHHHHHHHTTCBCSCCSGGGEEECT--TCCEEECCTTCCCGGGGGGCEEG----GGSSEECGGGCCHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHCCCccCCCccceEEEcC--CCeEEECcCcccccccccccccc----ccCCCCCCCccChhhhccCCCC
Confidence            33  3478899999999999999999985  88999999999987654321100    0111235567788887777777


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~l~  537 (766)
                      ...|++++...+.+++.
T Consensus       219 ~~~Di~slG~il~el~~  235 (322)
T 1p4o_A          219 TYSDVWSFGVVLWEIAT  235 (322)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHh
Confidence            77899999887766653

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.56  E-value=1.2e-14  Score=154.23  Aligned_cols=184  Identities=16%  Similarity=0.102  Sum_probs=119.3

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||.|++|.||+|+.+|+.||||+....-..                                             ++.
T Consensus        43 ~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~---------------------------------------------~~~   77 (337)
T 3mdy_A           43 KQIGKGRYGEVWMGKWRGEKVAVKVFFTTEEA---------------------------------------------SWF   77 (337)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEEEGGGHH---------------------------------------------HHH
T ss_pred             eEeecCCCeEEEEEEECCceEEEEEEeccccc---------------------------------------------hhh
Confidence            68999999999999999999999987432110                                             111


Q ss_pred             HHHHHHHHHHHhcCCCCcc-ccceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          379 QEAANAELFASNFKDMDYV-KVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      .|.....   .....++++ .+-..+....   ...++||||++|++|.++..  ...++...+...+.+  ..+..+|.
T Consensus        78 ~e~~~~~---~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~--~~~~~~~~~~~i~~~i~~~l~~lH~  152 (337)
T 3mdy_A           78 RETEIYQ---TVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLK--STTLDAKSMLKLAYSSVSGLCHLHT  152 (337)
T ss_dssp             HHHHHHT---STTCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHH--HCCBCHHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHH---HHhhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            1111111   111123332 2222222211   45799999999999998753  334555555444433  34788888


Q ss_pred             C--------CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC--
Q 004234          453 H--------GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT--  522 (766)
Q Consensus       453 ~--------GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~--  522 (766)
                      .        |++|+|+||.||+++.  ++.++|+|||++..+........  .-.....+++.++++++..-+.....  
T Consensus       153 ~~~~~~~~~~ivH~Dikp~Nill~~--~~~~kl~Dfg~a~~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~  228 (337)
T 3mdy_A          153 EIFSTQGKPAIAHRDLKSKNILVKK--NGTCCIADLGLAVKFISDTNEVD--IPPNTRVGTKRYMPPEVLDESLNRNHFQ  228 (337)
T ss_dssp             CBCSTTCBCCEECSCCCGGGEEECT--TSCEEECCCTTCEECC-----------CCSSCSCGGGCCHHHHTTCCCTTCTH
T ss_pred             hhhhhccCCCEEecccchHHEEECC--CCCEEEEeCCCceeecccccccc--CCCCCCccCcceeChhhcccccCCcccc
Confidence            8        9999999999999985  88999999999988765433211  11112346788999999876655555  


Q ss_pred             ----CCHHHHHHHHHHHH
Q 004234          523 ----GDTTAVRRTAQFFL  536 (766)
Q Consensus       523 ----~D~~~l~~~i~~~l  536 (766)
                          .|++++...+.+++
T Consensus       229 ~~~~~DiwslG~il~el~  246 (337)
T 3mdy_A          229 SYIMADMYSFGLILWEVA  246 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             CccccchHHHHHHHHHHH
Confidence                69999988776665

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.56  E-value=2e-14  Score=152.16  Aligned_cols=184  Identities=14%  Similarity=0.144  Sum_probs=117.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+........                                           -+
T Consensus        30 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-------------------------------------------~~   66 (326)
T 2x7f_A           30 ELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEE-------------------------------------------EE   66 (326)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTT-------------------------------------------HH
T ss_pred             EEeccCCCEEEEEEEECCCCCeEEEEEEecCcccH-------------------------------------------HH
Confidence            6899999999999999  69999999975331110                                           12


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeecc-----CCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHH--HHHH
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEY-----TTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYL  447 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~-----st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv--~~~l  447 (766)
                      +.+|...+.++.    +++++ .+-..+...     ....++||||++|++|.++.... ...++...+...+.  ...+
T Consensus        67 ~~~e~~~l~~l~----~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l  142 (326)
T 2x7f_A           67 IKQEINMLKKYS----HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGL  142 (326)
T ss_dssp             HHHHHHHHHHHC----CSTTBCCEEEEEEECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc----CCCCeeeeeeEEeeccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Confidence            334444444432    22332 222222211     34679999999999999875432 23455554444433  2347


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCCCCCC
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGVLVPT  522 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~-----lG~~~~~  522 (766)
                      ..+|..|++|+|+||+||+++.  ++.++|+|||++..+......      .....++..++++++..     .+..++.
T Consensus       143 ~~lH~~~ivH~dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~  214 (326)
T 2x7f_A          143 SHLHQHKVIHRDIKGQNVLLTE--NAEVKLVDFGVSAQLDRTVGR------RNTFIGTPYWMAPEVIACDENPDATYDFK  214 (326)
T ss_dssp             HHHHHTTCCCCCCSGGGEEECT--TCCEEECCCTTTC-------------------CCGGGCCHHHHC--------CCTT
T ss_pred             HHHHHCCccccCCcHHHEEEcC--CCCEEEeeCcCceecCcCccc------cccccCCccccChhhhccccccCcCCCcc
Confidence            8899999999999999999985  889999999999877543221      11123567778888775     3455677


Q ss_pred             CCHHHHHHHHHHHHH
Q 004234          523 GDTTAVRRTAQFFLN  537 (766)
Q Consensus       523 ~D~~~l~~~i~~~l~  537 (766)
                      .|++++...+.+++.
T Consensus       215 ~Di~slG~il~~l~~  229 (326)
T 2x7f_A          215 SDLWSLGITAIEMAE  229 (326)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHh
Confidence            899999987776653

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.56  E-value=1.5e-14  Score=154.68  Aligned_cols=94  Identities=13%  Similarity=0.024  Sum_probs=66.5

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH-hCCccccCCCCCcEEEeecCCC----------
Q 004234          407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL-SHGFFHADPHPGNIAVDDVNGG----------  473 (766)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~-~~GffHaDpHPGNILV~~~~~g----------  473 (766)
                      ....+|||||++|+++-+..  ....++...+...+.+  ..+..+| ..|++|+|+||+|||++.  ++          
T Consensus       134 ~~~~~lv~E~~~~g~ll~~~--~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivHrDlKp~NILl~~--~~~~~~~~~~~~  209 (336)
T 2vuw_A          134 DDQLFIVLEFEFGGIDLEQM--RTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKK--TSLKKLHYTLNG  209 (336)
T ss_dssp             TTCEEEEEEEECCCEETGGG--TTTCCCHHHHHHHHHHHHHHHHHHHHHHCCBCSCCCGGGEEEEE--CSCSEEEEEETT
T ss_pred             cCeEEEEEEecCCCccHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHhCCEeECCCCHHHEEEec--cCCcceeeeccC
Confidence            46789999999998654432  1233454444444333  3478889 899999999999999986  54          


Q ss_pred             ----------cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004234          474 ----------RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (766)
Q Consensus       474 ----------~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~  515 (766)
                                .++|+|||++..+....           ..+.+.++++++..
T Consensus       210 ~~~~~~~~~~~vkL~DFG~a~~~~~~~-----------~~gt~~y~aPE~~~  250 (336)
T 2vuw_A          210 KSSTIPSCGLQVSIIDYTLSRLERDGI-----------VVFCDVSMDEDLFT  250 (336)
T ss_dssp             EEEEEECTTEEEEECCCTTCBEEETTE-----------EECCCCTTCSGGGC
T ss_pred             ccccccCCCceEEEeeccccEecCCCc-----------EEEeecccChhhhc
Confidence                      89999999999876431           23455666676654

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.56  E-value=6e-15  Score=155.40  Aligned_cols=186  Identities=15%  Similarity=0.061  Sum_probs=113.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|..  +|+.||||+.++.-...                            .     +      ..-+
T Consensus        38 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~----------------------------~-----~------~~~~   78 (310)
T 2wqm_A           38 KKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMD----------------------------A-----K------ARAD   78 (310)
T ss_dssp             EEEECC--CEEEEEEETTTCCEEEEEEECTTSSCC----------------------------H-----H------HHHH
T ss_pred             EeecCCCCceEEEEEEcCCCceEEEEeeehhhccC----------------------------H-----H------HHHH
Confidence            7899999999999998  69999999885421110                            0     0      0113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh---hcCCCHHHHHHHHHH--HHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~---~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      +.+|++.+.++    . ++++.-..-+.......+++|||++|++|.++....   ...++...+...+.+  ..+..+|
T Consensus        79 ~~~E~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH  153 (310)
T 2wqm_A           79 CIKEIDLLKQL----N-HPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH  153 (310)
T ss_dssp             HHHHHHHHHTC----C-CTTBCCEEEEEEETTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----C-CCCEeeEEEEEEcCCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh
Confidence            44555555444    2 233222211222345679999999999999865421   223455544444333  3478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|++|.||+++.  ++.++|+|||++..+.......      ....++..++++++...+..+...|++++...
T Consensus       154 ~~~i~H~dl~p~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i  225 (310)
T 2wqm_A          154 SRRVMHRDIKPANVFITA--TGVVKLGDLGLGRFFSSKTTAA------HSLVGTPYYMSPERIHENGYNFKSDIWSLGCL  225 (310)
T ss_dssp             HTTCCCCCCCGGGEEECT--TSCEEECCC------------------------CCSSCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred             hCCeeCCCCcHHHEEEcC--CCCEEEEeccceeeecCCCccc------cccCCCeeEeChHHhCCCCCCchhhHHHHHHH
Confidence            999999999999999985  8899999999998775533211      11234566777887776666667799998877


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       226 l~~l~  230 (310)
T 2wqm_A          226 LYEMA  230 (310)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76655

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.56  E-value=4.3e-15  Score=156.22  Aligned_cols=187  Identities=15%  Similarity=0.093  Sum_probs=123.2

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|++|.||+|++       +|+.||||+.+.+....                                        
T Consensus        33 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------------   72 (316)
T 2xir_A           33 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS----------------------------------------   72 (316)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHH----------------------------------------
T ss_pred             eEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcH----------------------------------------
Confidence            6899999999999984       36899999985542211                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcC---------------CCH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG---------------VDR  435 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g---------------~d~  435 (766)
                       ..-.+.+|++.+.++.    +++++ .+-..+..-....+++|||++|++|.++.......               ++.
T Consensus        73 -~~~~~~~E~~~l~~l~----~hp~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~  147 (316)
T 2xir_A           73 -EHRALMSELKILIHIG----HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTL  147 (316)
T ss_dssp             -HHHHHHHHHHHHHHHC----CCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEH
T ss_pred             -HHHHHHHHHHHHHhcc----cCCCeeeEEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCH
Confidence             0113455666555552    23332 22222222233479999999999999875432211               334


Q ss_pred             HHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004234          436 KRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (766)
Q Consensus       436 ~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l  513 (766)
                      ..+...+.+  ..+..+|..|++|+|+||+||+++.  ++.++|+|||++..+.......    ......+++.++++++
T Consensus       148 ~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~----~~~~~~~t~~y~aPE~  221 (316)
T 2xir_A          148 EHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSE--KNVVKICDFGLARDIYKDPDYV----RKGDARLPLKWMAPET  221 (316)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCCGGGSCTTTCTTSE----EETTEEECGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccccCccceEEECC--CCCEEECCCccccccccCccce----eccCCCcceeecCchh
Confidence            444333332  3478899999999999999999986  7899999999998775432110    0011234556788888


Q ss_pred             HHcCCCCCCCCHHHHHHHHHHHH
Q 004234          514 VQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       514 ~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ...+..+...|++++...+.+++
T Consensus       222 ~~~~~~~~~~Di~slG~il~~l~  244 (316)
T 2xir_A          222 IFDRVYTIQSDVWSFGVLLWEIF  244 (316)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             hccccccchhHHHHHHHHHHHHH
Confidence            77776777789999988776654

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.56  E-value=6.2e-15  Score=153.81  Aligned_cols=185  Identities=13%  Similarity=0.118  Sum_probs=124.7

Q ss_pred             ccccccceeEEEEEee----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      ..||+|++|+||+|++    +|+.||||+.++.....                                   .      .
T Consensus        16 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~------~   54 (287)
T 1u59_A           16 IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKA-----------------------------------D------T   54 (287)
T ss_dssp             EEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHH-----------------------------------H------H
T ss_pred             ccccccCceeEEEeEeccCCCcceEEEEecCCccchh-----------------------------------H------H
Confidence            4899999999999986    47899999986542111                                   0      0


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          375 IDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      -.+.+|++.+..+    . ++++ .+-.++  .....++||||++|++|.++.......++...+...+.+  ..+..+|
T Consensus        55 ~~~~~E~~~l~~l----~-h~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH  127 (287)
T 1u59_A           55 EEMMREAQIMHQL----D-NPYIVRLIGVC--QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE  127 (287)
T ss_dssp             HHHHHHHHHHHHC----C-CTTBCCEEEEE--ESSSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC----C-CCCEeEEEEEe--cCCCcEEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHH
Confidence            1244555555544    2 2332 222222  245679999999999999876433344565555544433  3478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|+||.||+++.  ++.++|+|||++..+........   ......+++.++++++...+..++..|++++...
T Consensus       128 ~~~i~H~dlkp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  202 (287)
T 1u59_A          128 EKNFVHRDLAARNVLLVN--RHYAKISDFGLSKALGADDSYYT---ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVT  202 (287)
T ss_dssp             HTTEECCCCSGGGEEEEE--TTEEEECCCTTCEECTTCSCEEC---CCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHH
T ss_pred             HCCEeeCCCchheEEEcC--CCCEEECcccceeeeccCcceee---ccccccccccccCHHHhccCCCCchhhHHHHHHH
Confidence            999999999999999986  88999999999988754321100   0011123466778888776666777899999877


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       203 l~ell  207 (287)
T 1u59_A          203 MWEAL  207 (287)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.56  E-value=1.8e-15  Score=158.68  Aligned_cols=208  Identities=15%  Similarity=0.084  Sum_probs=119.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.++.....-.   .       +.....+.      ............-...-+
T Consensus        19 ~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~---~-------~~~~~~~~------~~~~~~~~~~~~~~~~~~   82 (298)
T 2zv2_A           19 DEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQA---G-------FPRRPPPR------GTRPAPGGCIQPRGPIEQ   82 (298)
T ss_dssp             EEEEC--CCEEEEEEETTTTEEEEEEEEECC-----------------------------------------------CH
T ss_pred             eEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhc---c-------cccccccc------cccccccccccccchHHH
Confidence            6899999999999998  6999999998654321100   0       00000000      000000000000001124


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|++.+.++    .+..-+.+-.++..- ....++||||++|++|.++..  ...++...+...+.+  ..+..+|..
T Consensus        83 ~~~E~~~l~~l----~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~  156 (298)
T 2zv2_A           83 VYQEIAILKKL----DHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT--LKPLSEDQARFYFQDLIKGIEYLHYQ  156 (298)
T ss_dssp             HHHHHHHHHTC----CCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC--SSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhC----CCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            55666665554    222223333333221 345699999999999988643  233555544444333  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC---CCCCCCHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV---LVPTGDTTAVRR  530 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~---~~~~~D~~~l~~  530 (766)
                      |++|+|+||+||+++.  +++++|+|||++..+......      ..-..+++.+++++....+.   ..+..|++++..
T Consensus       157 ~ivH~Dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~  228 (298)
T 2zv2_A          157 KIIHRDIKPSNLLVGE--DGHIKIADFGVSNEFKGSDAL------LSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGV  228 (298)
T ss_dssp             TEECCCCCGGGEEECT--TSCEEECCCTTCEECSSSSCE------ECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHH
T ss_pred             CeeccCCCHHHEEECC--CCCEEEecCCCcccccccccc------ccCCcCCccccChhhhccCCCCCCCchhhhHhHHH
Confidence            9999999999999985  889999999999887543210      01123567777887764332   234468888887


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       229 ~l~~l~  234 (298)
T 2zv2_A          229 TLYCFV  234 (298)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.56  E-value=1.5e-14  Score=152.32  Aligned_cols=190  Identities=18%  Similarity=0.144  Sum_probs=122.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+..-...                    ..   . ..             ..+
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--------------------~~---~-~~-------------~~~   57 (308)
T 3g33_A           15 AEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGG--------------------GG---G-GL-------------PIS   57 (308)
T ss_dssp             EEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCT--------------------TS---S-CC-------------CHH
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEecccccc--------------------cc---c-cc-------------chh
Confidence            6899999999999997  69999999875321110                    00   0 00             012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCC----CeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTT----PQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st----~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~q  449 (766)
                      +.+|.+.+.++.. +.+..-+.+-.++....+    ..+++|||++| +|.++.... ..+++...+...+.+  ..+..
T Consensus        58 ~~~e~~~l~~l~~-~~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~  135 (308)
T 3g33_A           58 TVREVALLRRLEA-FEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPGLPAETIKDLMRQFLRGLDF  135 (308)
T ss_dssp             HHHHHHHHHHHHH-HCCTTBCCEEEEEEECCSSSEEEEEEEEECCCC-BHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh-cCCCCeEEeeeeeeccCCCCceeEEEEehhhhc-CHHHHHhhccCCCCCHHHHHHHHHHHHHHHHH
Confidence            2233333444332 122222333333322222    36899999997 777754322 222555554444433  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|+|+||+||+++.  ++.++|+|||++..++.....       ....+++.++++++...+..+...|++++.
T Consensus       136 lH~~~ivH~Dlkp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  206 (308)
T 3g33_A          136 LHANCIVHRDLKPENILVTS--GGTVKLADFGLARIYSYQMAL-------TPVVVTLWYRAPEVLLQSTYATPVDMWSVG  206 (308)
T ss_dssp             HHHTTCCCSCCCTTTEEECT--TSCEEECSCSCTTTSTTCCCS-------GGGGCCCSSCCHHHHHTSCCCSTHHHHHHH
T ss_pred             HHHCCcccCCCCHHHEEEcC--CCCEEEeeCccccccCCCccc-------CCccccccccCchHHcCCCCCchHHHHHHH
Confidence            99999999999999999985  889999999999877643321       123457778889988877778889999998


Q ss_pred             HHHHHHH
Q 004234          530 RTAQFFL  536 (766)
Q Consensus       530 ~~i~~~l  536 (766)
                      ..+.+++
T Consensus       207 ~il~~l~  213 (308)
T 3g33_A          207 CIFAEMF  213 (308)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            7766544

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.55  E-value=3.5e-15  Score=160.80  Aligned_cols=195  Identities=13%  Similarity=0.087  Sum_probs=133.1

Q ss_pred             ccccccceeEEEEEee-c---------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-K---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~---------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (766)
                      +.||+|++|.||+|+. .         |+.||||+.++.  +.+..                                  
T Consensus        48 ~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~--~~~~~----------------------------------   91 (352)
T 2jii_A           48 SFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD--GRLFN----------------------------------   91 (352)
T ss_dssp             EEEEEETTEEEEEEEECC-----------CEEEEEEETT--STHHH----------------------------------
T ss_pred             EEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc--chHHH----------------------------------
Confidence            6899999999999998 2         789999998644  22222                                  


Q ss_pred             HHHHHHHHHHHHH--HHHHHHHHhcCCCCccccceeeecc---CCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHH
Q 004234          369 SVLYQEIDYTQEA--ANAELFASNFKDMDYVKVPTIFWEY---TTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA  442 (766)
Q Consensus       369 ~~l~~ElDf~~EA--~Nl~~f~~~f~~~~~V~vP~v~~e~---st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~l  442 (766)
                           |+++....  .|+.++...+...+...+|.++...   ....+|||||+ |++|.++.... ...++...+...+
T Consensus        92 -----E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~  165 (352)
T 2jii_A           92 -----EQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVA  165 (352)
T ss_dssp             -----HHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHH
T ss_pred             -----HHHHHHHhcccchhhhhhhhccCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHH
Confidence                 22222222  3555555566666667777776532   35679999999 99999976432 2446666555554


Q ss_pred             HH--HHHHHHHhCCccccCCCCCcEEEeecCCC--cEEEEeecceeccChhhHHHH-HHHHHHHhhcCHHHHHHHHHHcC
Q 004234          443 VE--SYLEQILSHGFFHADPHPGNIAVDDVNGG--RLIFYDFGMMGSISPNIREGL-LEAFYGIYEKDADKVLQAMVQMG  517 (766)
Q Consensus       443 v~--~~l~qI~~~GffHaDpHPGNILV~~~~~g--~l~LiDFGlv~~L~~~~r~~l-~~l~~a~~~~D~~~v~~~l~~lG  517 (766)
                      .+  ..+..+|..|++|+|+||.||+++.  ++  .++|+|||++..+........ .........+++.++++++..-+
T Consensus       166 ~qi~~~L~~LH~~~ivH~Dikp~NIl~~~--~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  243 (352)
T 2jii_A          166 CRLLDALEFLHENEYVHGNVTAENIFVDP--EDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGC  243 (352)
T ss_dssp             HHHHHHHHHHHHTTCBCSCCCGGGEEEET--TEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTC
T ss_pred             HHHHHHHHHHHhCCccCCCCCHHHEEEcC--CCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccC
Confidence            44  3478899999999999999999985  66  899999999988765421100 00000112467788888888766


Q ss_pred             CCCCCCCHHHHHHHHHHHHH
Q 004234          518 VLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       518 ~~~~~~D~~~l~~~i~~~l~  537 (766)
                      ..++..|++++...+.+++.
T Consensus       244 ~~~~~~Di~slG~il~el~~  263 (352)
T 2jii_A          244 GPSRRSDLQSLGYCMLKWLY  263 (352)
T ss_dssp             CCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHh
Confidence            66777899999987776653

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.55  E-value=1.2e-14  Score=157.58  Aligned_cols=189  Identities=16%  Similarity=0.148  Sum_probs=125.2

Q ss_pred             ccccccceeEEEEEee-----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|++|+||+|+.     +|+.||||+.+......                .  .      ...             
T Consensus        60 ~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~----------------~--~------~~~-------------  102 (355)
T 1vzo_A           60 KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQ----------------K--A------KTT-------------  102 (355)
T ss_dssp             EEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEE----------------E--E------SSG-------------
T ss_pred             EEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhh----------------h--h------hHH-------------
Confidence            6899999999999997     48999999985432110                0  0      000             


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQIL  451 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~  451 (766)
                       -.+.+|.+.+.++.    ++++|....-+.......+|||||++|++|.++... ...++...+...+.  ...+..+|
T Consensus       103 -~~~~~E~~~l~~l~----~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH  176 (355)
T 1vzo_A          103 -EHTRTERQVLEHIR----QSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQ-RERFTEHEVQIYVGEIVLALEHLH  176 (355)
T ss_dssp             -GGCCCHHHHHHHHH----TCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcc----CCCceeEEEEEEeeCceEEEEeecCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence             01223444444443    234433333333445667999999999999987542 23355555444433  33478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCCHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVR  529 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG--~~~~~~D~~~l~  529 (766)
                      ..|++|+|+||.||+++.  +++++|+|||++..+........     .-..+++.++++++...+  ..+...|++++.
T Consensus       177 ~~~ivH~Dlkp~NIll~~--~~~~kl~DfG~a~~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG  249 (355)
T 1vzo_A          177 KLGIIYRDIKLENILLDS--NGHVVLTDFGLSKEFVADETERA-----YDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLG  249 (355)
T ss_dssp             HTTCCCCCCCGGGEEECT--TSCEEESCSSEEEECCGGGGGGG-----CGGGSCCTTCCHHHHTTCC---CTHHHHHHHH
T ss_pred             HCCcccCCCCHHHEEECC--CCcEEEeeCCCCeecccCCCCcc-----cCcccCcCccChhhhcCCCCCCCchhhHHHHH
Confidence            999999999999999985  88999999999988765432211     112467788888888643  245567999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       250 ~il~ell~  257 (355)
T 1vzo_A          250 VLMYELLT  257 (355)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88776654

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.55  E-value=4.5e-15  Score=158.49  Aligned_cols=207  Identities=15%  Similarity=0.112  Sum_probs=127.3

Q ss_pred             CCChhhhhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHH
Q 004234          286 GAPLDDVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (766)
Q Consensus       286 G~~~eeiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~  362 (766)
                      |..+.++-..|.. +.||+|++|.||+|+.  +|+.||||+.++.....                 ..+           
T Consensus        18 ~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----------------~~~-----------   69 (345)
T 3hko_A           18 GGSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQ-----------------INP-----------   69 (345)
T ss_dssp             CBCHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC-------------------------------
T ss_pred             CchhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcc-----------------cCH-----------
Confidence            4455566666654 7899999999999998  58999999874321100                 000           


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc-----------
Q 004234          363 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-----------  431 (766)
Q Consensus       363 i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~-----------  431 (766)
                         +      ..-.+.+|++.+.++.     +++|.-..-+.......+|||||++|++|.++......           
T Consensus        70 ---~------~~~~~~~E~~~l~~l~-----hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~  135 (345)
T 3hko_A           70 ---K------DVERIKTEVRLMKKLH-----HPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVV  135 (345)
T ss_dssp             ---C------HHHHHHHHHHHHHHCC-----CTTBCCEEEEEECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEE
T ss_pred             ---H------HHHHHHHHHHHHHhCC-----CCCcceeehhhccCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccc
Confidence               0      0113455666555542     33332222222335567999999999999886521000           


Q ss_pred             --------------------------C--CCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeec
Q 004234          432 --------------------------G--VDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG  481 (766)
Q Consensus       432 --------------------------g--~d~~~la~~l--v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFG  481 (766)
                                                .  .+...+...+  +...+..+|..|++|+|+||.||+++....+.++|+|||
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg  215 (345)
T 3hko_A          136 KTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFG  215 (345)
T ss_dssp             CCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSCCEEECCCT
T ss_pred             cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEecCCCceEEEeecc
Confidence                                      0  0111222222  223477889999999999999999985223389999999


Q ss_pred             ceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc--CCCCCCCCHHHHHHHHHHHH
Q 004234          482 MMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM--GVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       482 lv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l--G~~~~~~D~~~l~~~i~~~l  536 (766)
                      ++..+..........  .....+++.++++++...  +..++..|++++...+.+++
T Consensus       216 ~a~~~~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~  270 (345)
T 3hko_A          216 LSKEFYKLNNGEYYG--MTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLL  270 (345)
T ss_dssp             TCEEGGGTTCC----------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHH
T ss_pred             ccccccccCcccccc--ccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHH
Confidence            998764422111110  112346788889998864  45566789999988776655

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.55  E-value=1.4e-14  Score=150.10  Aligned_cols=186  Identities=12%  Similarity=0.076  Sum_probs=124.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+..+.....                                 .+       .-.
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~-------~~~   51 (284)
T 3kk8_A           12 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSA---------------------------------RD-------FQK   51 (284)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCH---------------------------------HH-------HHH
T ss_pred             hhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCH---------------------------------HH-------HHH
Confidence            6899999999999998  59999999985432110                                 00       012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++.     ++++.-..-+....+..+++|||++|+++.+.... ...++...+...+.+  ..+..+|..|
T Consensus        52 ~~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~  125 (284)
T 3kk8_A           52 LEREARICRKLQ-----HPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVA-REFYSEADASHCIQQILESIAYCHSNG  125 (284)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcC-----CCCcCeEEEEEEcCCEEEEEEecCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            345555555542     23332222222344567999999999999775432 233455444443333  3478899999


Q ss_pred             ccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||.||+++.. .++.++|+|||++.........       ....+++.++++++...+..++..|++++...+.
T Consensus       126 i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~  198 (284)
T 3kk8_A          126 IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW-------HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILY  198 (284)
T ss_dssp             EECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBC-------CCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHH
T ss_pred             cCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccc-------cCCCCCcCCcCchhhcCCCCCcccchHHHHHHHH
Confidence            9999999999999751 1235999999999877654321       1134677888898887776777789999988776


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       199 ~l~~  202 (284)
T 3kk8_A          199 ILLV  202 (284)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6553

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.55  E-value=1.4e-14  Score=157.78  Aligned_cols=182  Identities=16%  Similarity=0.098  Sum_probs=115.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+.+....                                     +      .
T Consensus        26 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-------------------------------------~------~   62 (361)
T 3uc3_A           26 KDIGSGNFGVARLMRDKLTKELVAVKYIERGAAID-------------------------------------E------N   62 (361)
T ss_dssp             EEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSC-------------------------------------H------H
T ss_pred             EEeccCCCEEEEEEEECCCCcEEEEEEEecCcccc-------------------------------------H------H
Confidence            6899999999999999  69999999885432110                                     0      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|+..+..+    . +++| .+-.++ ...+..++||||++|++|.+.... ...++...+...+.+  ..+..+|..
T Consensus        63 ~~~E~~~l~~l----~-hpniv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~ql~~~L~~LH~~  135 (361)
T 3uc3_A           63 VQREIINHRSL----R-HPNIVRFKEVI-LTPTHLAIIMEYASGGELYERICN-AGRFSEDEARFFFQQLLSGVSYCHSM  135 (361)
T ss_dssp             HHHHHHHHHHC----C-CTTBCCEEEEE-ECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhC----C-CCCCCcEEEEE-eeCCEEEEEEEeCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            33444444443    2 2333 222222 335667999999999999886532 233555554444333  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC-CCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT-GDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~-~D~~~l~~~i  532 (766)
                      |++|+|+||.||+++....++++|+|||++.........       ....+++.++++++...+..... .|++++...+
T Consensus       136 ~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il  208 (361)
T 3uc3_A          136 QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQP-------KSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTL  208 (361)
T ss_dssp             TCCSCCCCGGGEEECSSSSCCEEECCCCCC----------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred             CcccCCCCHHHEEEcCCCCceEEEeecCccccccccCCC-------CCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHH
Confidence            999999999999998523346999999998754332211       11235677888888765544333 6999998877


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       209 ~ell~  213 (361)
T 3uc3_A          209 YVMLV  213 (361)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66653

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.55  E-value=1e-14  Score=170.25  Aligned_cols=185  Identities=13%  Similarity=0.118  Sum_probs=124.1

Q ss_pred             cccccceeEEEEEee----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       300 PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      .||+|+||.||+|.+    ++..||||+.+++....                           +              .-
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~---------------------------~--------------~~  381 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKA---------------------------D--------------TE  381 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSST---------------------------T--------------HH
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChH---------------------------H--------------HH
Confidence            699999999999987    36789999986543221                           0              11


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +|.+|++.+.++    .+..-|.+-.++.  ....+|||||++|++|.++.......++...+...+.+  ..+..+|..
T Consensus       382 ~~~~E~~il~~l----~hpniv~l~~~~~--~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~  455 (613)
T 2ozo_A          382 EMMREAQIMHQL----DNPYIVRLIGVCQ--AEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK  455 (613)
T ss_dssp             HHHHHHHHHTTC----CCTTBCCEEEEEE--SSSEEEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC----CCCCEeeEEEEec--cCCeEEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            345566555443    2222222323322  35679999999999999876433344565555554433  348889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||.||+++.  ++.++|+|||++..+.........   .........++++++...+..+...|++++...+.
T Consensus       456 ~iiHrDlkp~NILl~~--~~~vkL~DFGla~~~~~~~~~~~~---~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~  530 (613)
T 2ozo_A          456 NFVHRNLAARNVLLVN--RHYAKISDFGLSKALGADDSYYTA---RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMW  530 (613)
T ss_dssp             TCCCSCCSGGGEEEEE--TTEEEECCCSTTTTCC-----------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CEEcCcCCHHHEEEcC--CCcEEEeeccCcccccCCCceeee---ccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHH
Confidence            9999999999999986  889999999999988654321110   11112345688888888777788889999998777


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       531 ell  533 (613)
T 2ozo_A          531 EAL  533 (613)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.55  E-value=1.3e-14  Score=154.91  Aligned_cols=185  Identities=16%  Similarity=0.131  Sum_probs=119.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+........                                  ...      -.
T Consensus        31 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~------~~   70 (331)
T 4aaa_A           31 GLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDK----------------------------------MVK------KI   70 (331)
T ss_dssp             EEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCH----------------------------------HHH------HH
T ss_pred             eEEeecCCEEEEEEEECCCCceEEEEEEecCCCch----------------------------------HHH------HH
Confidence            6899999999999999  49999999874432111                                  011      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++.     ++++.-..-+.......++||||++|..+.++... ..+++...+...+.+  ..+..+|..|
T Consensus        71 ~~~E~~~l~~l~-----h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~  144 (331)
T 4aaa_A           71 AMREIKLLKQLR-----HENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELF-PNGLDYQVVQKYLFQIINGIGFCHSHN  144 (331)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHS-TTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhCC-----CCCEeeEEEEeecCCEEEEEEecCCcchHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            334555444442     23332222222345667999999999998886432 234555555444433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||+||+++.  ++.++|+|||++..+......      .....++..++++++...+ ..++..|++++...+.
T Consensus       145 ivH~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~  216 (331)
T 4aaa_A          145 IIHRDIKPENILVSQ--SGVVKLCDFGFARTLAAPGEV------YDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVT  216 (331)
T ss_dssp             CCCCCCCGGGEEECT--TSCEEECCCTTC------------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHH
T ss_pred             EEccCcChheEEEcC--CCcEEEEeCCCceeecCCccc------cCCCcCCccccCcccccCCCCcchHHHHHHHHHHHH
Confidence            999999999999985  889999999999877553221      1112356677888877654 4566679999988777


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       217 ~l~~  220 (331)
T 4aaa_A          217 EMFM  220 (331)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6653

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.55  E-value=7.3e-15  Score=156.91  Aligned_cols=184  Identities=14%  Similarity=0.098  Sum_probs=120.1

Q ss_pred             ccccccceeEEEEEee--cCee----EEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEE----VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~----VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.||+|++|.||+|++  +|+.    ||+|..++.....                                         
T Consensus        21 ~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------   59 (327)
T 3poz_A           21 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK-----------------------------------------   59 (327)
T ss_dssp             EEEEEETTEEEEEEEECC----CCEEEEEEEC------------------------------------------------
T ss_pred             eEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHH-----------------------------------------
Confidence            6899999999999997  4654    5777653221100                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                      ..-.|.+|+..+.++.    + ++  +++++.. .....+++|||++|++|.+........++...+...+.+  ..+..
T Consensus        60 ~~~~~~~E~~~l~~l~----h-~~--iv~~~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~  132 (327)
T 3poz_A           60 ANKEILDEAYVMASVD----N-PH--VCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNY  132 (327)
T ss_dssp             CHHHHHHHHHHHHHCC----B-TT--BCCEEEEEESSSEEEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC----C-CC--EeEEEEEEecCCeEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            0123555666665542    2 32  2233321 235678999999999999876543444565555444433  34888


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|+|+||.||+++.  ++.++|+|||++..++........    ....+.+.+++++...-+..++..|++++.
T Consensus       133 LH~~~ivH~Dikp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG  206 (327)
T 3poz_A          133 LEDRRLVHRDLAARNVLVKT--PQHVKITDFGLAKLLGAEEKEYHA----EGGKVPIKWMALESILHRIYTHQSDVWSYG  206 (327)
T ss_dssp             HHHTTCCCSCCCGGGEEEEE--TTEEEECCTTHHHHHTTTCC-----------CCCGGGSCHHHHHHCCCCHHHHHHHHH
T ss_pred             HhhCCeeCCCCChheEEECC--CCCEEEccCcceeEccCCcccccc----cCCCccccccChHHhccCCCCchhhhhhhH
Confidence            99999999999999999986  899999999999877554322111    112345578888888777777788999998


Q ss_pred             HHHHHHH
Q 004234          530 RTAQFFL  536 (766)
Q Consensus       530 ~~i~~~l  536 (766)
                      ..+.+++
T Consensus       207 ~il~ell  213 (327)
T 3poz_A          207 VTVWELM  213 (327)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776654

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.55  E-value=2.8e-14  Score=147.88  Aligned_cols=188  Identities=16%  Similarity=0.163  Sum_probs=125.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                     . .....              .-.
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~---------------------~-~~~~~--------------~~~   54 (283)
T 3bhy_A           11 EELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSS---------------------S-RRGVS--------------REE   54 (283)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTT---------------------C-SSSBC--------------HHH
T ss_pred             HhhcccCceEEEEEEEcCCCCeeehHHhhhccccc---------------------c-ccchH--------------HHH
Confidence            6899999999999999  59999999885432211                     0 00000              013


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|+..+.++.     ++++.-..-+....+..+++|||++|++|.++... ...++...+...+.+  ..+..+|..|
T Consensus        55 ~~~E~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~  128 (283)
T 3bhy_A           55 IEREVNILREIR-----HPNIITLHDIFENKTDVVLILELVSGGELFDFLAE-KESLTEDEATQFLKQILDGVHYLHSKR  128 (283)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-----CCCeeehhheecCCCeEEEEEeecCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            445555555542     23332222223345667999999999999987542 234555554444433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCC----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGG----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g----~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      ++|+|+||.||+++.  ++    .++|+|||++..+......       ....+++.++++++...+..++..|++++..
T Consensus       129 i~H~dl~p~Nil~~~--~~~~~~~~kl~dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  199 (283)
T 3bhy_A          129 IAHFDLKPENIMLLD--KNVPNPRIKLIDFGIAHKIEAGNEF-------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGV  199 (283)
T ss_dssp             EECSCCSGGGEEESC--SSSSSCCEEECCCTTCEECC---------------CCCGGGCCHHHHTTCCCCTHHHHHHHHH
T ss_pred             ccCCCCChHHEEEec--CCCCCCceEEEecccceeccCCCcc-------cccCCCcCccCcceecCCCCCcchhhhhHHH
Confidence            999999999999985  44    7999999999987654321       1124677888899888777777889999988


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       200 il~~l~~  206 (283)
T 3bhy_A          200 ITYILLS  206 (283)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766553

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.55  E-value=1.2e-14  Score=159.99  Aligned_cols=187  Identities=16%  Similarity=0.162  Sum_probs=120.7

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|+||.||+|.. +|+.||||+........                                  +      ..-.+
T Consensus        62 ~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~----------------------------------~------~~~~~  101 (390)
T 2zmd_A           62 KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN----------------------------------Q------TLDSY  101 (390)
T ss_dssp             EEEECCSSEEEEEEECTTCCEEEEEEEECTTCCH----------------------------------H------HHHHH
T ss_pred             EEEccCCCeEEEEEEcCCCCEEEEEEEecccccH----------------------------------H------HHHHH
Confidence            6899999999999998 69999999885432111                                  0      01134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~~Gf  455 (766)
                      .+|+..+.++.+   ++++|.-..-+.......+|||| +.|++|.++.... ..++.......+.  -..+..+|..|+
T Consensus       102 ~~Ei~~l~~l~~---~~~~iv~~~~~~~~~~~~~lv~E-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~lH~~~i  176 (390)
T 2zmd_A          102 RNEIAYLNKLQQ---HSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQHGI  176 (390)
T ss_dssp             HHHHHHHHHHTT---TCTTBCCEEEEEECSSEEEEEEE-CCSEEHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHccc---CCCeEEEEEEEEecCCEEEEEEe-cCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            566666666543   12333222222344556799999 5677888865422 2344443333322  234788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----------CCCCCCCC
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----------GVLVPTGD  524 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-----------G~~~~~~D  524 (766)
                      +|+|+||.||+++   ++.++|+|||++..+.+......    .....+++.+++|++...           +..++..|
T Consensus       177 vHrDlkp~NIll~---~~~~kl~DFG~a~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~D  249 (390)
T 2zmd_A          177 VHSDLKPANFLIV---DGMLKLIDFGIANQMQPDTTSVV----KDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSD  249 (390)
T ss_dssp             CCCCCCGGGEEES---SSCEEECCCSSSCCC-------------CCSCCCGGGCCHHHHHCC------------CCHHHH
T ss_pred             eecCCCHHHEEEE---CCeEEEEecCccccccCCCcccc----CCCCCcCCCccChHHhhhccccccccccccCCCChhh
Confidence            9999999999995   68999999999998865432211    122347888999998864           24455679


Q ss_pred             HHHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFLN  537 (766)
Q Consensus       525 ~~~l~~~i~~~l~  537 (766)
                      ++++...+.+++.
T Consensus       250 iwSlGvil~ell~  262 (390)
T 2zmd_A          250 VWSLGCILYYMTY  262 (390)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999887776653

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.55  E-value=1.2e-14  Score=150.32  Aligned_cols=183  Identities=16%  Similarity=0.145  Sum_probs=124.6

Q ss_pred             ccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      .|.. +.||+|++|+||+|+.  +|+.||||+.+....                                          
T Consensus        12 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------------------------------------------   49 (284)
T 2a19_B           12 DFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNE------------------------------------------   49 (284)
T ss_dssp             HEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCSG------------------------------------------
T ss_pred             ccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccccH------------------------------------------
Confidence            4433 6899999999999999  599999998854321                                          


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeec---------------cCCCeEEEEeecCCCChhhhhhhh-hcCCCH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWE---------------YTTPQILTMEYVPGIKINRIQSLD-ELGVDR  435 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e---------------~st~~vLVMEyieG~~L~d~~~l~-~~g~d~  435 (766)
                          .+.+|++.+.++    .+..-+.+..++..               .....+++|||++|++|.++.... ...++.
T Consensus        50 ----~~~~e~~~l~~l----~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  121 (284)
T 2a19_B           50 ----KAEREVKALAKL----DHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDK  121 (284)
T ss_dssp             ----GGHHHHHHHHHC----CCTTBCCEEEEEEEEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCH
T ss_pred             ----HHHHHHHHHHhC----CCCCEEEEeeeEeccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCH
Confidence                112333333333    22222222222221               123368999999999999976432 234555


Q ss_pred             HHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004234          436 KRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (766)
Q Consensus       436 ~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l  513 (766)
                      ..+...+.+  ..+..+|..|++|+|+||+||+++.  ++.++|+|||++..+......       ....+++.+++++.
T Consensus       122 ~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~  192 (284)
T 2a19_B          122 VLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVD--TKQVKIGDFGLVTSLKNDGKR-------TRSKGTLRYMSPEQ  192 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEE--TTEEEECCCTTCEESSCCSCC-------CCCCSCCTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcC--CCCEEECcchhheeccccccc-------cccCCcccccChhh
Confidence            544443333  3478899999999999999999986  889999999999887653211       11235677888888


Q ss_pred             HHcCCCCCCCCHHHHHHHHHHHH
Q 004234          514 VQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       514 ~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ...+..++..|++++...+.+++
T Consensus       193 ~~~~~~~~~~Di~slG~il~~l~  215 (284)
T 2a19_B          193 ISSQDYGKEVDLYALGLILAELL  215 (284)
T ss_dssp             HHCSCCCTHHHHHHHHHHHHHHH
T ss_pred             hccCCCcchhhhHHHHHHHHHHH
Confidence            88777777889999988776655

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.55  E-value=5.3e-15  Score=171.34  Aligned_cols=180  Identities=17%  Similarity=0.137  Sum_probs=105.7

Q ss_pred             cccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      -..+++.|+++.++.  .|+.|+||+.........                              +..+-.+.-  --+|
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~------------------------------~~~~~~~~~--~~~~  288 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGI------------------------------LTAEESQRN--KYEL  288 (569)
T ss_dssp             C-C--------CCEEEEECSSEEEEEEESSCSTTC------------------------------SCHHHHHHH--HHHH
T ss_pred             ccccCCcccccccccccccceeEEEEEeccccccc------------------------------chhhhhHHH--HHHH
Confidence            457788888888776  599999999854432110                              000111110  1146


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeec--cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e--~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~Gf  455 (766)
                      .+|+.-+.++.      .+..+|+++..  -....|||||||+|++|.++... ...++..+++..++. .+..+|.+|+
T Consensus       289 ~~E~~~l~~~~------~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~-~~~l~~~~I~~QIl~-AL~ylH~~GI  360 (569)
T 4azs_A          289 HNEIKFLTQPP------AGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAA-GEEIDREKILGSLLR-SLAALEKQGF  360 (569)
T ss_dssp             HHHHHHHHSCC------TTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHT-TCCCCHHHHHHHHHH-HHHHHHHTTC
T ss_pred             HHHHHHHHhcC------CCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHh-CCCCCHHHHHHHHHH-HHHHHHHCCc
Confidence            66776665542      23456776653  45667999999999999997642 334566777665544 5889999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      +|||+||+|||+++  +|+++|+|||+++.+.......      ....+++.++++++.. |......|.+++
T Consensus       361 IHRDIKPeNILL~~--dg~vKL~DFGlAr~~~~~~~~~------~t~vGTp~YmAPE~l~-g~~~~~~d~~s~  424 (569)
T 4azs_A          361 WHDDVRPWNVMVDA--RQHARLIDFGSIVTTPQDCSWP------TNLVQSFFVFVNELFA-ENKSWNGFWRSA  424 (569)
T ss_dssp             EESCCCGGGEEECT--TSCEEECCCTTEESCC---CCS------HHHHHHHHHHHHHHC--------------
T ss_pred             eeccCchHhEEECC--CCCEEEeecccCeeCCCCCccc------cCceechhhccHHHhC-CCCCCccccccc
Confidence            99999999999986  8999999999999876542211      1123578899998875 333344455443

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.55  E-value=5.9e-15  Score=157.05  Aligned_cols=198  Identities=17%  Similarity=0.176  Sum_probs=129.3

Q ss_pred             Chhhhhh--ccCc-ccccccceeEEEEEee------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCccc
Q 004234          288 PLDDVFE--RFDV-EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKR  358 (766)
Q Consensus       288 ~~eeiF~--~fd~-~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~  358 (766)
                      .+.++|.  .|.. +.||.|++|.||+|++      +|+.||||+.++.-...                           
T Consensus        15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~---------------------------   67 (327)
T 3lxl_A           15 QDPTIFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQ---------------------------   67 (327)
T ss_dssp             --CCBCCGGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHH---------------------------
T ss_pred             ChhhhhchhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHH---------------------------
Confidence            4445554  2322 6899999999999984      48999999885431111                           


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc-eeee-ccCCCeEEEEeecCCCChhhhhhhhhcCCCHH
Q 004234          359 DWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP-TIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRK  436 (766)
Q Consensus       359 d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP-~v~~-e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~  436 (766)
                                     .-.+.+|++.+.++     .++++... .++. +-....++||||++|++|.++.......++..
T Consensus        68 ---------------~~~~~~E~~~l~~l-----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  127 (327)
T 3lxl_A           68 ---------------QRDFQREIQILKAL-----HSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDAS  127 (327)
T ss_dssp             ---------------HHHHHHHHHHHHTC-----CCTTBCCEEEEEECSSSCEEEEEEECCTTCBHHHHHHHHGGGCCHH
T ss_pred             ---------------HHHHHHHHHHHHhc-----CCCceeEEEEEEecCCCceEEEEEeecCCCCHHHHHHhcccCCCHH
Confidence                           01244555555444     22333222 2222 12344689999999999999765433446666


Q ss_pred             HHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004234          437 RLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  514 (766)
Q Consensus       437 ~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~  514 (766)
                      .+...+.+  ..+..+|..|++|+|+||+||+++.  ++.++|+|||++..++........   .....++..++++++.
T Consensus       128 ~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~  202 (327)
T 3lxl_A          128 RLLLYSSQICKGMEYLGSRRCVHRDLAARNILVES--EAHVKIADFGLAKLLPLDKDYYVV---REPGQSPIFWYAPESL  202 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEE--TTEEEECCGGGCEECCTTCSEEEC---SSCCCSCGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECC--CCCEEEcccccceecccCCcccee---eccCCccccccCHHHh
Confidence            55554433  3478899999999999999999986  899999999999877543211000   0111244557778877


Q ss_pred             HcCCCCCCCCHHHHHHHHHHHHH
Q 004234          515 QMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       515 ~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      .-+..++..|++++...+.+++.
T Consensus       203 ~~~~~~~~~Di~slG~il~~ll~  225 (327)
T 3lxl_A          203 SDNIFSRQSDVWSFGVVLYELFT  225 (327)
T ss_dssp             HHCEEEHHHHHHHHHHHHHHHHT
T ss_pred             ccCCCChHHhHHHHHHHHHHHHh
Confidence            76666777899999988777654

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.55  E-value=1.2e-14  Score=154.47  Aligned_cols=188  Identities=16%  Similarity=0.162  Sum_probs=126.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                     . ......              -.
T Consensus        18 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------~-~~~~~~--------------~~   61 (321)
T 2a2a_A           18 EELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRA---------------------S-RRGVSR--------------EE   61 (321)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSS---------------------C-SSSBCH--------------HH
T ss_pred             eEeeecCCEEEEEEEECCCCeEEEEEEEecccccc---------------------c-ccchhH--------------HH
Confidence            6899999999999998  59999999986543211                     0 000000              12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|+..+..+.     ++++.-..-+.......++||||++|++|.++... ...++...+...+.+  ..+..+|..|
T Consensus        62 ~~~E~~~l~~l~-----h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~aL~~lH~~~  135 (321)
T 2a2a_A           62 IEREVSILRQVL-----HHNVITLHDVYENRTDVVLILELVSGGELFDFLAQ-KESLSEEEATSFIKQILDGVNYLHTKK  135 (321)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHT-CSCEEHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-----CCCcceEEEEEecCCEEEEEEEcCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            445555554442     23332222222345667999999999999987542 223344444443333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCC----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGG----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g----~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      ++|+|+||+||+++.  ++    .++|+|||++..+......       .-..+++.++++++...+..++..|++++..
T Consensus       136 ivH~dikp~NIl~~~--~~~~~~~~kl~Dfg~~~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~  206 (321)
T 2a2a_A          136 IAHFDLKPENIMLLD--KNIPIPHIKLIDFGLAHEIEDGVEF-------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGV  206 (321)
T ss_dssp             EECCCCSGGGEEESC--TTSSSCCEEECCCTTCEECCTTCCC-------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHH
T ss_pred             eecCCCChHHEEEec--CCCCcCCEEEccCccceecCccccc-------cccCCCCCccCcccccCCCCCCccccHHHHH
Confidence            999999999999985  55    7999999999887653211       1123677888899887776777789999988


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       207 il~~l~~  213 (321)
T 2a2a_A          207 ITYILLS  213 (321)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766653

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.54  E-value=1.7e-14  Score=160.74  Aligned_cols=191  Identities=13%  Similarity=0.092  Sum_probs=121.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+.......                                        ..-.
T Consensus        32 ~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~----------------------------------------~~~~   71 (432)
T 3n9x_A           32 HLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLI----------------------------------------DCKR   71 (432)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHH----------------------------------------HHHH
T ss_pred             EEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChH----------------------------------------HHHH
Confidence            6899999999999998  589999998854322110                                        0113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC----CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT----TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s----t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      +.+|++.+.++.    +..-+.+-.++....    ...++||||++| +|.++... ...++...+...+.+  ..+..+
T Consensus        72 ~~~E~~~l~~l~----h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~-~~~l~~~~~~~i~~qil~aL~~L  145 (432)
T 3n9x_A           72 ILREITILNRLK----SDYIIRLYDLIIPDDLLKFDELYIVLEIADS-DLKKLFKT-PIFLTEEHIKTILYNLLLGENFI  145 (432)
T ss_dssp             HHHHHHHHHHCC----CTTBCCEEEECCCSCTTTCCCEEEEEECCSE-EHHHHHHS-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC----CCCcceEEEEEecCCCCcCCeEEEEEecCCc-CHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHH
Confidence            445555555542    222222222222211    457999999987 77776432 223555554444433  347889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHH----------------HHHHHhhcCHHHHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE----------------AFYGIYEKDADKVLQAMV  514 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~----------------l~~a~~~~D~~~v~~~l~  514 (766)
                      |..|++|+|+||+||+++.  ++.++|+|||++..+..........                -...-..++..++++++.
T Consensus       146 H~~givHrDlkp~NILl~~--~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~  223 (432)
T 3n9x_A          146 HESGIIHRDLKPANCLLNQ--DCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELI  223 (432)
T ss_dssp             HHTTEECCCCCGGGEEECT--TCCEEECCCTTCEEC-------------------------------CCCCCTTCCHHHH
T ss_pred             HHCCCCCCCCCHHHeEECC--CCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHH
Confidence            9999999999999999985  8999999999999886543221110                011223456778888876


Q ss_pred             -HcCCCCCCCCHHHHHHHHHHHHH
Q 004234          515 -QMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       515 -~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                       ..+..+...|++++...+.+++.
T Consensus       224 ~~~~~~~~~~DiwSlG~il~ell~  247 (432)
T 3n9x_A          224 LLQENYTKSIDIWSTGCIFAELLN  247 (432)
T ss_dssp             TTCSCCCTHHHHHHHHHHHHHHHT
T ss_pred             hcCCCCCcccccchHHHHHHHHHh
Confidence             34446677899999988887763

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.54  E-value=6.5e-15  Score=167.31  Aligned_cols=183  Identities=13%  Similarity=0.050  Sum_probs=126.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|++  +|+.||||+.+++...                                           .-+
T Consensus       226 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~-------------------------------------------~~~  262 (495)
T 1opk_A          226 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-------------------------------------------VEE  262 (495)
T ss_dssp             EESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSC-------------------------------------------HHH
T ss_pred             eEecCCCCeEEEEEEEcCCCeEEEEEEecCcccc-------------------------------------------hHH
Confidence            6899999999999999  4899999988543211                                           013


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      |.+|++.+.++.     +++|.-..-+.......+|||||++|++|.++... ....++...+...+.+  ..+..+|..
T Consensus       263 ~~~E~~~l~~l~-----hpniv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~  337 (495)
T 1opk_A          263 FLKEAAVMKEIK-----HPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK  337 (495)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcC-----CCCEeeEEEEEecCCcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            556666666552     23332222222334567999999999999987543 2233455554444333  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||.||+++.  ++.++|+|||++..+.......     ..-......+++++....+..+...|++++...+.
T Consensus       338 ~ivHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~  410 (495)
T 1opk_A          338 NFIHRNLAARNCLVGE--NHLVKVADFGLSRLMTGDTYTA-----HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLW  410 (495)
T ss_dssp             TEECSCCSGGGEEECG--GGCEEECCTTCEECCTTCCEEC-----CTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHH
T ss_pred             CcccCCCChhhEEECC--CCcEEEeecccceeccCCceee-----cCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHH
Confidence            9999999999999986  7899999999998875432110     01112345678888888777777889999988776


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       411 el~  413 (495)
T 1opk_A          411 EIA  413 (495)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            655

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.54  E-value=4.5e-15  Score=163.84  Aligned_cols=191  Identities=13%  Similarity=0.167  Sum_probs=127.2

Q ss_pred             hhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          293 FERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       293 F~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      +..|.. +.||+|++|.||+|+.  +|+.||||+.+....                ...         ..          
T Consensus        14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~----------------~~~---------~~----------   58 (384)
T 4fr4_A           14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKC----------------VER---------NE----------   58 (384)
T ss_dssp             GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHH----------------HHT---------TC----------
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhc----------------ccH---------HH----------
Confidence            344543 7899999999999998  589999998742100                000         00          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHH
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l  447 (766)
                          .-.+.+|++.+..+     ++++|.-..-+.......++||||++|++|.++... ...++...+...+.+  ..+
T Consensus        59 ----~~~~~~E~~il~~l-----~hp~Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~aL  128 (384)
T 4fr4_A           59 ----VRNVFKELQIMQGL-----EHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQ-NVHFKEETVKLFICELVMAL  128 (384)
T ss_dssp             ----HHHHHHHHHHHHTC-----CCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHT-TCCCCHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhC-----CCCCCCcEEEEEEeCCEEEEEEecCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHH
Confidence                01234455544433     233332222222334567999999999999886542 223455444443333  347


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc---CCCCCCCC
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM---GVLVPTGD  524 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l---G~~~~~~D  524 (766)
                      ..+|..|++|+|+||+||+++.  +|.++|+|||++..++.....       ....+++.++++++...   ...+...|
T Consensus       129 ~~LH~~givHrDlkp~NIll~~--~g~vkL~DFG~a~~~~~~~~~-------~~~~gt~~Y~aPE~~~~~~~~~~~~~~D  199 (384)
T 4fr4_A          129 DYLQNQRIIHRDMKPDNILLDE--HGHVHITDFNIAAMLPRETQI-------TTMAGTKPYMAPEMFSSRKGAGYSFAVD  199 (384)
T ss_dssp             HHHHHTTEECCCCSGGGEEECT--TSCEEECCCTTCEECCTTCCB-------CCCCSCGGGCCGGGTCCCSSCCBCTTHH
T ss_pred             HHHHHCCceeccCcHHHeEECC--CCCEEEeccceeeeccCCCce-------eccCCCccccCCeeeccCCCCCCCccce
Confidence            8899999999999999999985  899999999999987654321       12347788888888752   22466789


Q ss_pred             HHHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFLN  537 (766)
Q Consensus       525 ~~~l~~~i~~~l~  537 (766)
                      ++++...+.+++.
T Consensus       200 iwSlG~il~ellt  212 (384)
T 4fr4_A          200 WWSLGVTAYELLR  212 (384)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             eechHHHHHHHHh
Confidence            9999988877764

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.54  E-value=7e-15  Score=173.55  Aligned_cols=191  Identities=18%  Similarity=0.097  Sum_probs=127.0

Q ss_pred             ccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +|+. +.||.|+||+||+|+.  +|+.||||+.+.....                ..   .      +.           
T Consensus       342 ~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~----------------~~---~------~~-----------  385 (674)
T 3pfq_A          342 DFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVI----------------QD---D------DV-----------  385 (674)
T ss_dssp             TEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHH----------------HT---T------TT-----------
T ss_pred             ceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccc----------------cH---H------HH-----------
Confidence            3443 6899999999999998  5899999998432100                00   0      00           


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                         -.+..|.+.+..    ..+++.|.....+.+.....+|||||++|++|.+..... ..++...+...+.+  ..+..
T Consensus       386 ---~~~~~E~~~l~~----~~~~~~i~~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~  457 (674)
T 3pfq_A          386 ---ECTMVEKRVLAL----PGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV-GRFKEPHAVFYAAEIAIGLFF  457 (674)
T ss_dssp             ---HHHHHHHHHHTC----TTCCTTBCCEEEECBCSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHh----ccCCCeEEEEEEEEEeCCEEEEEEeCcCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHH
Confidence               012223322221    223344333333333445679999999999998865422 23555444444333  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|+|+||+|||++.  +|.++|+|||++.........      .....+++.+++++++..+-.+...|++++.
T Consensus       458 LH~~gIiHrDLKp~NILl~~--~g~ikL~DFGla~~~~~~~~~------~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlG  529 (674)
T 3pfq_A          458 LQSKGIIYRDLKLDNVMLDS--EGHIKIADFGMCKENIWDGVT------TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFG  529 (674)
T ss_dssp             HHHTSEECCCCCSTTEEECS--SSCEEECCCTTCEECCCTTCC------BCCCCSCSSSCCHHHHTCCCBSTHHHHHHHH
T ss_pred             HHhCCeEeccCChhhEEEcC--CCcEEEeecceeeccccCCcc------cccccCCCcccCHhhhcCCCCCccceEechH
Confidence            99999999999999999986  899999999999864322111      1123478889999999877778888999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       530 vilyellt  537 (674)
T 3pfq_A          530 VLLYEMLA  537 (674)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            88877664

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.54  E-value=3e-14  Score=151.71  Aligned_cols=186  Identities=12%  Similarity=0.067  Sum_probs=123.7

Q ss_pred             ccccccceeEEEEEee--cC-eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KG-EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G-~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      +.||+|++|.||+|+.  +| +.||||+.+..-.                                     ..      -
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~-------------------------------------~~------~   61 (355)
T 2eu9_A           25 GNLGEGTFGKVVECLDHARGKSQVALKIIRNVGK-------------------------------------YR------E   61 (355)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEECSCHH-------------------------------------HH------H
T ss_pred             EEeeccCCeEEEEEEecCCCceEEEEEEEccccc-------------------------------------ch------h
Confidence            6899999999999998  34 7999999853210                                     01      1


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcccccee--eeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTI--FWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v--~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      .+.+|++.+.++.+..... ...+...  +.......+|||||++|..+..+.......++...+...+.+  ..+..+|
T Consensus        62 ~~~~E~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH  140 (355)
T 2eu9_A           62 AARLEINVLKKIKEKDKEN-KFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH  140 (355)
T ss_dssp             HHHHHHHHHHHHHHHCTTS-CSCBCCEEEEEEETTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCC-ceeEEEeeeeeeeCCeEEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            2344555555555432211 1122222  224456789999999665554443322234555555444433  3478899


Q ss_pred             hCCccccCCCCCcEEEee-----------------cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDD-----------------VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  514 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~-----------------~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~  514 (766)
                      ..|++|+|+||+||++..                 ..++.++|+|||++........         ...++..++++++.
T Consensus       141 ~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~---------~~~gt~~y~aPE~~  211 (355)
T 2eu9_A          141 ENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHT---------TIVATRHYRPPEVI  211 (355)
T ss_dssp             TTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSCCC---------SSCSCGGGCCHHHH
T ss_pred             HCCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCcccccccccc---------CCcCCCcccCCeee
Confidence            999999999999999932                 1368899999999987654321         12467788899988


Q ss_pred             HcCCCCCCCCHHHHHHHHHHHHH
Q 004234          515 QMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       515 ~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      .-+..+...|++++...+.+++.
T Consensus       212 ~~~~~~~~~Di~slG~il~el~~  234 (355)
T 2eu9_A          212 LELGWAQPCDVWSIGCILFEYYR  234 (355)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCccchHHHHHHHHHHHh
Confidence            76666777899999987776653

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.54  E-value=6.5e-15  Score=154.73  Aligned_cols=186  Identities=13%  Similarity=0.065  Sum_probs=122.3

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|++|.||+|+.       +|+.||||+.+++....                                        
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------------   68 (314)
T 2ivs_A           29 KTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPS----------------------------------------   68 (314)
T ss_dssp             EEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHH----------------------------------------
T ss_pred             eeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHH----------------------------------------
Confidence            6899999999999986       24899999985442211                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc--------------------
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL--------------------  431 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~--------------------  431 (766)
                       ..-++.+|++.+..+     .++++.-..-+.......+++|||++|++|.++......                    
T Consensus        69 -~~~~~~~E~~~l~~l-----~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  142 (314)
T 2ivs_A           69 -ELRDLLSEFNVLKQV-----NHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHP  142 (314)
T ss_dssp             -HHHHHHHHHHHHTTC-----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC--------------
T ss_pred             -HHHHHHHHHHHHhhC-----CCCceeeEEEEEecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccc
Confidence             001234455544443     233332222223345677999999999999987542211                    


Q ss_pred             ---CCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCH
Q 004234          432 ---GVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDA  506 (766)
Q Consensus       432 ---g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~  506 (766)
                         .++...+...+.+  ..+..+|..|++|+|+||+||+++.  ++.++|+|||++..+.......-    ......++
T Consensus       143 ~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dikp~NIli~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~  216 (314)
T 2ivs_A          143 DERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAE--GRKMKISDFGLSRDVYEEDSYVK----RSQGRIPV  216 (314)
T ss_dssp             --CEECHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEET--TTEEEECCCTTCEECTTTSCEEC----SSCCCSCG
T ss_pred             cccCcCHHHHHHHHHHHHHHHHHHHHCCCcccccchheEEEcC--CCCEEEcccccccccccccccee----ccCCCCcc
Confidence               1334444433333  3478899999999999999999985  88999999999987754321100    01112345


Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          507 DKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       507 ~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      .+++++....+..++..|++++...+.+++
T Consensus       217 ~y~aPE~~~~~~~~~~~Di~slG~il~el~  246 (314)
T 2ivs_A          217 KWMAIESLFDHIYTTQSDVWSFGVLLWEIV  246 (314)
T ss_dssp             GGCCHHHHHHCEECHHHHHHHHHHHHHHHH
T ss_pred             cccChhhhcCCCcCchhhHHHHHHHHHHHH
Confidence            677888777666677789999988776654

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.54  E-value=2.5e-15  Score=156.28  Aligned_cols=188  Identities=18%  Similarity=0.176  Sum_probs=116.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|+||+|+.  +|+.||||+.+..-.     +                                .      -.
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-----~--------------------------------~------~~   48 (303)
T 1zy4_A           12 AVLGQGAFGQVVKARNALDSRYYAIKKIRHTEE-----K--------------------------------L------ST   48 (303)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEEEHH-----H--------------------------------H------HH
T ss_pred             heeccCCcEEEEEEEEcCCCeEEEEEEEeccHH-----H--------------------------------H------HH
Confidence            6899999999999998  699999998742100     0                                0      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeee------------ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFW------------EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV  443 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~------------e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv  443 (766)
                      +.+|+..+.++    . ++++ .+-..+.            ...+..++||||++|++|.++........+...+...+.
T Consensus        49 ~~~E~~~l~~l----~-h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~  123 (303)
T 1zy4_A           49 ILSEVMLLASL----N-HQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFR  123 (303)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEEEECCCCCC------CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHhc----C-chHHHHHHHHHHhhcchhhhhcccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHH
Confidence            33344433332    2 2222 1111111            113456999999999999997643333344444433332


Q ss_pred             H--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHH--------HHHHHHhhcCHHHHHHHH
Q 004234          444 E--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL--------EAFYGIYEKDADKVLQAM  513 (766)
Q Consensus       444 ~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~--------~l~~a~~~~D~~~v~~~l  513 (766)
                      +  ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......-.        .-......++..++++++
T Consensus       124 qi~~~l~~LH~~~i~H~dlkp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  201 (303)
T 1zy4_A          124 QILEALSYIHSQGIIHRDLKPMNIFIDE--SRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEV  201 (303)
T ss_dssp             HHHHHHHHHHHTTCCCSCCCGGGEEECT--TSCEEECCCCCCSCTTC-------------------------CTTSCHHH
T ss_pred             HHHHHHHHHHhCCeecccCCHHhEEEcC--CCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCccc
Confidence            2  3478899999999999999999985  889999999999877543211000        000111234556777887


Q ss_pred             HHc-CCCCCCCCHHHHHHHHHHHH
Q 004234          514 VQM-GVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       514 ~~l-G~~~~~~D~~~l~~~i~~~l  536 (766)
                      ..- +..+...|++++...+.+++
T Consensus       202 ~~~~~~~~~~~Di~slG~il~~l~  225 (303)
T 1zy4_A          202 LDGTGHYNEKIDMYSLGIIFFEMI  225 (303)
T ss_dssp             HTSCSCCCTHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCcchhhHHHHHHHHHHHH
Confidence            753 45667789999988776665

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.54  E-value=1.2e-14  Score=166.70  Aligned_cols=182  Identities=15%  Similarity=0.117  Sum_probs=127.4

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|+||.||+|++ .+..||||+.+++....                                           -+|
T Consensus       273 ~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~-------------------------------------------~~~  309 (535)
T 2h8h_A          273 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-------------------------------------------EAF  309 (535)
T ss_dssp             EEEEECSSEEEEEEEETTTEEEEEEEECTTSSCH-------------------------------------------HHH
T ss_pred             eecccCCCeEEEEEEECCCceEEEEEeCCCCCCH-------------------------------------------HHH
Confidence            6799999999999999 56889999986542110                                           135


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      .+|++.+.++.    +..-+.+-.++.  ....+|||||++|++|.++.... ...++...+...+.+  ..+..+|..|
T Consensus       310 ~~E~~~l~~l~----hpniv~~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~  383 (535)
T 2h8h_A          310 LQEAQVMKKLR----HEKLVQLYAVVS--EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN  383 (535)
T ss_dssp             HHHHHHHHHCC----CTTBCCEEEEEC--SSSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCC----CCCEeeEEEEEe--eccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            66777666652    222222223322  25679999999999999976432 223555555554433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.|||++.  ++.++|+|||++..+.......     .........+++++....+..+...|+++|...+.+
T Consensus       384 ivHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~e  456 (535)
T 2h8h_A          384 YVHRDLRAANILVGE--NLVCKVADFGLARLIEDNEYTA-----RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE  456 (535)
T ss_dssp             CCCSCCSGGGEEECG--GGCEEECCTTSTTTCCCHHHHT-----TCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             eeCCCCCHhhEEEcC--CCcEEEcccccceecCCCceec-----ccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHH
Confidence            999999999999986  7899999999998876532111     111233467888888887777778899999877665


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       457 l~  458 (535)
T 2h8h_A          457 LT  458 (535)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.54  E-value=2e-14  Score=151.51  Aligned_cols=188  Identities=15%  Similarity=0.143  Sum_probs=114.9

Q ss_pred             ccccccceeEEEEEee-c----CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-K----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~----G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|++|.||+|++ .    ++.||||+.++.....                                 .       .
T Consensus        40 ~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~---------------------------------~-------~   79 (313)
T 3brb_A           40 KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQ---------------------------------R-------E   79 (313)
T ss_dssp             EEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCH---------------------------------H-------H
T ss_pred             cceeecCCeEEEEEEEeccCCceeEEEEEEEeccccch---------------------------------h-------H
Confidence            6799999999999987 2    4589999885432111                                 0       0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccC----CCeEEEEeecCCCChhhhhhhh-----hcCCCHHHHHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT----TPQILTMEYVPGIKINRIQSLD-----ELGVDRKRLGRYAVE  444 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s----t~~vLVMEyieG~~L~d~~~l~-----~~g~d~~~la~~lv~  444 (766)
                      .-.+.+|++.+.++    .+..-+.+-.++.+..    ...+++|||++|++|.++....     ...++...+...+.+
T Consensus        80 ~~~~~~e~~~l~~l----~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~q  155 (313)
T 3brb_A           80 IEEFLSEAACMKDF----SHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVD  155 (313)
T ss_dssp             HHHHHHHHHHHHTC----CCTTBCCCCEEEEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC----CCCCeeeeeEEEeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHH
Confidence            01344555555444    2222233333332222    1349999999999999875321     123455555444433


Q ss_pred             --HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004234          445 --SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (766)
Q Consensus       445 --~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~  522 (766)
                        ..+..+|..|++|+|+||+||+++.  ++.++|+|||++..+........    .......+.+++++....+..++.
T Consensus       156 i~~aL~~LH~~~ivH~dikp~NIli~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~  229 (313)
T 3brb_A          156 IALGMEYLSNRNFLHRDLAARNCMLRD--DMTVCVADFGLSKKIYSGDYYRQ----GRIAKMPVKWIAIESLADRVYTSK  229 (313)
T ss_dssp             HHHHHHHHHTTTCCCCCCSGGGEEECT--TSCEEECSCSCC--------------------CCGGGSCHHHHHSSCCCHH
T ss_pred             HHHHHHHHHhCCcccCCCCcceEEEcC--CCcEEEeecCcceecccccccCc----ccccCCCccccCchhhcCCCccch
Confidence              3478899999999999999999985  88999999999988755432111    112234567888888877767777


Q ss_pred             CCHHHHHHHHHHHH
Q 004234          523 GDTTAVRRTAQFFL  536 (766)
Q Consensus       523 ~D~~~l~~~i~~~l  536 (766)
                      .|++++...+.+++
T Consensus       230 ~Di~slG~il~el~  243 (313)
T 3brb_A          230 SDVWAFGVTMWEIA  243 (313)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHH
Confidence            89999988776654

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.54  E-value=5.4e-15  Score=160.01  Aligned_cols=189  Identities=15%  Similarity=0.117  Sum_probs=120.2

Q ss_pred             hhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004234          292 VFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (766)
Q Consensus       292 iF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (766)
                      +.+.|.. +.||.|++|.||+|+.  +|+.||||+.......                                      
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~--------------------------------------   61 (342)
T 2qr7_A           20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD--------------------------------------   61 (342)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC--------------------------------------
T ss_pred             ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC--------------------------------------
Confidence            3344443 6899999999999998  5999999998443211                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HH
Q 004234          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SY  446 (766)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~  446 (766)
                              ...|...+.++.    .+++|.-..-+.+.....++||||++|++|.+.... ...++...+...+.+  ..
T Consensus        62 --------~~~E~~~l~~~~----~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~i~~-~~~~~~~~~~~~~~qi~~a  128 (342)
T 2qr7_A           62 --------PTEEIEILLRYG----QHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILR-QKFFSEREASAVLFTITKT  128 (342)
T ss_dssp             --------CHHHHHHHHHHT----TSTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHT-CTTCCHHHHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHHhc----CCCCcCeEEEEEEcCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHH
Confidence                    112222232221    233332222222345567999999999999886532 223455544444333  34


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCC--CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004234          447 LEQILSHGFFHADPHPGNIAVDDVNG--GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (766)
Q Consensus       447 l~qI~~~GffHaDpHPGNILV~~~~~--g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D  524 (766)
                      +..+|..|++|+|+||+||++.+..+  +.++|+|||++..+......      .....+++.++++++..-...++..|
T Consensus       129 l~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~D  202 (342)
T 2qr7_A          129 VEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGL------LMTPCYTANFVAPEVLERQGYDAACD  202 (342)
T ss_dssp             HHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCC------BCCSSCCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCc------eeccCCCccccCHHHhcCCCCCCccC
Confidence            78899999999999999999964211  35999999999877543211      01123456667777665443455678


Q ss_pred             HHHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFLN  537 (766)
Q Consensus       525 ~~~l~~~i~~~l~  537 (766)
                      ++++...+.+++.
T Consensus       203 iwslG~il~ell~  215 (342)
T 2qr7_A          203 IWSLGVLLYTMLT  215 (342)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             eeeHhHHHHHHhc
Confidence            8888887776654

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.54  E-value=5.4e-15  Score=157.75  Aligned_cols=184  Identities=12%  Similarity=0.046  Sum_probs=114.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+.......                                         ...
T Consensus         8 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-----------------------------------------~~~   46 (324)
T 3mtl_A            8 DKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGA-----------------------------------------PCT   46 (324)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECC-----------------------------------------------CCC
T ss_pred             EEEcCCCCEEEEEEEECCCCcEEEEEEEeccccccc-----------------------------------------chh
Confidence            6799999999999998  599999998854321110                                         001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++    . +++|.-..-+.......++||||++| ++.+........++...+...+.+  ..+..+|..|
T Consensus        47 ~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~  120 (324)
T 3mtl_A           47 AIREVSLLKDL----K-HANIVTLHDIIHTEKSLTLVFEYLDK-DLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQK  120 (324)
T ss_dssp             CCCCHHHHSCC----C-CTTBCCEEEEEECSSCEEEEEECCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhc----C-CCCCCeeeeEEeeCCEEEEEeccccc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            11233333222    2 23332222222345667999999997 666654333333555544443333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||+||+++.  ++.++|+|||++...+......      ....++..++++++..- ...+...|++++...+.
T Consensus       121 ivH~Dikp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~  192 (324)
T 3mtl_A          121 VLHRDLKPQNLLINE--RGELKLADFGLARAKSIPTKTY------DNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFY  192 (324)
T ss_dssp             EEESSCCGGGEEECT--TCCEEECSSSEEECC------------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHH
T ss_pred             ccCCCcCHHHEEECC--CCCEEEccCcccccccCCcccc------ccccCcccccChhhhcCCCCCCcHHHHHHHHHHHH
Confidence            999999999999985  8899999999998765433211      11234667788887654 33466679999998777


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       193 ~l~~  196 (324)
T 3mtl_A          193 EMAT  196 (324)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6653

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.54  E-value=1.9e-14  Score=156.90  Aligned_cols=181  Identities=18%  Similarity=0.225  Sum_probs=115.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||+|++|+||+|+.  +|+.||||+........                                  ...+      .
T Consensus        31 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~------~   70 (367)
T 1cm8_A           31 QPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSE----------------------------------LFAK------R   70 (367)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEECSSTTSSH----------------------------------HHHH------H
T ss_pred             EEeeecCCeEEEEEEECCCCCEEEEEEeCccccCH----------------------------------HHHH------H
Confidence            6899999999999998  59999999874322111                                  0111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc-----CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY-----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-----st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                      +.+|.+.+..+    .+..-+.+-.++..-     .+..++||||+ |.+|.++...  ..++...+...+.+  ..+..
T Consensus        71 ~~~E~~~l~~l----~hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~~~~qi~~~L~~  143 (367)
T 1cm8_A           71 AYRELRLLKHM----RHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKH--EKLGEDRIQFLVYQMLKGLRY  143 (367)
T ss_dssp             HHHHHHHHHHC----CBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----CCcCCCCceeeEecCCccccCceEEEEEecC-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHH
Confidence            33445444443    222223333343221     13459999999 7888887543  34555544443333  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAV  528 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l  528 (766)
                      +|..|++|+|+||+||+++.  ++.++|+|||++...+.....         ..++..++++++... ...+...|++++
T Consensus       144 LH~~~ivH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~---------~~~t~~y~aPE~~~~~~~~~~~~Diwsl  212 (367)
T 1cm8_A          144 IHAAGIIHRDLKPGNLAVNE--DCELKILDFGLARQADSEMTG---------YVVTRWYRAPEVILNWMRYTQTVDIWSV  212 (367)
T ss_dssp             HHHTTEECCCCCGGGEEECT--TCCEEECCCTTCEECCSSCCS---------SCSCGGGCCTHHHHTTTCCCTTHHHHHH
T ss_pred             HHHCCccccCcCHHHEEEcC--CCCEEEEeeecccccccccCc---------CcCCCCcCCHHHHhCCCCCChhhhHHHH
Confidence            99999999999999999985  889999999999987653211         234667777877654 456778899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       213 G~il~ell~  221 (367)
T 1cm8_A          213 GCIMAEMIT  221 (367)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            987776653

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.53  E-value=2.7e-14  Score=164.39  Aligned_cols=170  Identities=13%  Similarity=0.108  Sum_probs=109.6

Q ss_pred             cCcccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          296 FDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       296 fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      +..+.||+|++|+||+|...|+.|++|...+.....                             ...-++    . ..-
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~~~~~~~~k~~~~~~~~~-----------------------------~~~~~~----~-~~~  384 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRD-----------------------------ERLDEN----I-RKS  384 (540)
T ss_dssp             ---------CCEEEEEEECSSCEEEEEEECCCTTSC-----------------------------HHHHHH----H-HHH
T ss_pred             CCCCEEeeCCCEEEEEEEECCCeEEEEEEecccccc-----------------------------hhhhhH----H-HHH
Confidence            345789999999999998899999999875532211                             000011    0 112


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCc
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGF  455 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~Gf  455 (766)
                      .+.+|++.+.++.     ++++..|..|.......+|||||++|++|.++...      ...++..++ ..+..+|..|+
T Consensus       385 ~~~~E~~il~~l~-----h~nIv~~~~~~~~~~~~~lVmE~~~ggsL~~~l~~------~~~i~~qi~-~aL~~LH~~gI  452 (540)
T 3en9_A          385 RTAREARYLALVK-----DFGIPAPYIFDVDLDNKRIMMSYINGKLAKDVIED------NLDIAYKIG-EIVGKLHKNDV  452 (540)
T ss_dssp             HHHHHHHHHHHGG-----GGTCCCCCEEEEETTTTEEEEECCCSEEHHHHSTT------CTHHHHHHH-HHHHHHHHTTE
T ss_pred             HHHHHHHHHHhcC-----CCCcCceEEEEEeCCccEEEEECCCCCCHHHHHHH------HHHHHHHHH-HHHHHHHHCcC
Confidence            4677777777763     36677778887777888999999999999987532      223444433 34788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHH-HHHHHHhhcCHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL-EAFYGIYEKDADKVLQAMVQ  515 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~-~l~~a~~~~D~~~v~~~l~~  515 (766)
                      +|+|+||+||+++   + +++|+|||++..+++....... ..+.....+++.+++|++.+
T Consensus       453 iHrDiKp~NILl~---~-~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~  509 (540)
T 3en9_A          453 IHNDLTTSNFIFD---K-DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWE  509 (540)
T ss_dssp             ECTTCCTTSEEES---S-SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCCCCHHHEEEC---C-eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHH
Confidence            9999999999997   3 9999999999998775433211 11112223455566665543

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.53  E-value=1.8e-14  Score=149.89  Aligned_cols=183  Identities=17%  Similarity=0.141  Sum_probs=125.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+..+.....                                 .+.      +-.
T Consensus        20 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~------~~~   60 (284)
T 2vgo_A           20 RPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEK---------------------------------EGV------EHQ   60 (284)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHH---------------------------------TTC------HHH
T ss_pred             heecCCCCeEEEEEEEcCCCcEEEEEEEcccccch---------------------------------HHH------HHH
Confidence            7899999999999998  58999999874311000                                 000      113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|+..+.++    . ++++.-..-+.......+++|||++|++|.+..... ..++...+...+.+  ..+..+|..|
T Consensus        61 ~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~  134 (284)
T 2vgo_A           61 LRREIEIQSHL----R-HPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKH-GRFDEQRSATFMEELADALHYCHERK  134 (284)
T ss_dssp             HHHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhcC----C-CCCEeeEEEEEEcCCEEEEEEEeCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            44455444443    2 333322222233456679999999999998865322 23455544444333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|++|.||+++.  ++.++|+|||++.........        ...++..++++++...+..++..|++++...+.+
T Consensus       135 i~H~dl~p~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~  204 (284)
T 2vgo_A          135 VIHRDIKPENLLMGY--KGELKIADFGWSVHAPSLRRR--------TMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYE  204 (284)
T ss_dssp             EECCCCSGGGEEECT--TCCEEECCCTTCEECSSSCBC--------CCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHH
T ss_pred             ceecCCCHHHEEEcC--CCCEEEecccccccCcccccc--------cccCCCCcCCHHHhccCCCCcccchhhHHHHHHH
Confidence            999999999999985  889999999998776543211        1346778888988887777888899999987766


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       205 l~  206 (284)
T 2vgo_A          205 FL  206 (284)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.53  E-value=5.2e-15  Score=154.51  Aligned_cols=184  Identities=15%  Similarity=0.068  Sum_probs=117.1

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||+|++|.||+|+.+|+.||||+.++.-..                                             ++.
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~---------------------------------------------~~~   48 (301)
T 3q4u_A           14 ECVGKGRYGEVWRGSWQGENVAVKIFSSRDEK---------------------------------------------SWF   48 (301)
T ss_dssp             EEEEECSSEEEEEEEETTEEEEEEEECGGGHH---------------------------------------------HHH
T ss_pred             EeeccCCCcEEEEEEECCEEEEEEEeccccch---------------------------------------------hhH
Confidence            68999999999999999999999997432111                                             111


Q ss_pred             HHHHHHHHHHHhcCCCCcc-ccceeee---ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH-
Q 004234          379 QEAANAELFASNFKDMDYV-KVPTIFW---EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL-  451 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V-~vP~v~~---e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~-  451 (766)
                      .|...+...  .+ .++++ .+-..+.   ......++||||++|++|.++..  ...++...+...+.+  ..+..+| 
T Consensus        49 ~e~~~~~~~--~l-~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~--~~~~~~~~~~~i~~~i~~~l~~lH~  123 (301)
T 3q4u_A           49 RETELYNTV--ML-RHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQ--LTTLDTVSCLRIVLSIASGLAHLHI  123 (301)
T ss_dssp             HHHHHHHHT--CC-CCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHHHHHT--TCCBCHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHh--hc-cCcCeeeEEEeeccccCCCceeEEehhhccCCCHHHHHh--hcccCHHHHHHHHHHHHHHHHHHHH
Confidence            122211111  02 22332 2211111   11234689999999999999753  334555554444433  3478899 


Q ss_pred             -------hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-----
Q 004234          452 -------SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-----  519 (766)
Q Consensus       452 -------~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~-----  519 (766)
                             ..|++|+|+||.||+++.  ++.++|+|||++..++........  ......+++.+++|++..-+..     
T Consensus       124 ~~~~~~~~~~ivH~Dlkp~Nill~~--~~~~kl~Dfg~a~~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~  199 (301)
T 3q4u_A          124 EIFGTQGKPAIAHRDLKSKNILVKK--NGQCCIADLGLAVMHSQSTNQLDV--GNNPRVGTKRYMAPEVLDETIQVDCFD  199 (301)
T ss_dssp             CBCSTTCBCEEECSCCCGGGEEECT--TSCEEECCCTTCEEEETTTTEEEC--CCCCCCCCGGGCCHHHHTTCCCTTCHH
T ss_pred             hhhhccCCCCeecCCCChHhEEEcC--CCCEEEeeCCCeeecccccccccc--cccccccccceeChhhhcCcCCCCccc
Confidence                   999999999999999985  889999999999766443221000  0001135778888888865522     


Q ss_pred             -CCCCCHHHHHHHHHHHH
Q 004234          520 -VPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       520 -~~~~D~~~l~~~i~~~l  536 (766)
                       ++..|++++...+.+++
T Consensus       200 ~~~~~DvwslG~il~el~  217 (301)
T 3q4u_A          200 SYKRVDIWAFGLVLWEVA  217 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHH
Confidence             23568888887776655

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.53  E-value=1.9e-14  Score=160.45  Aligned_cols=183  Identities=16%  Similarity=0.162  Sum_probs=123.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||+||+|+.  +|+.||||+.+..-.                                     ...      .
T Consensus       103 ~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~-------------------------------------~~~------~  139 (429)
T 3kvw_A          103 KVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKR-------------------------------------FHR------Q  139 (429)
T ss_dssp             EEEEESSSEEEEEEEETTTTEEEEEEEECSCHH-------------------------------------HHH------H
T ss_pred             EEcccCccEEEEEEEECCCCcEEEEEEECCccc-------------------------------------hHH------H
Confidence            6899999999999998  589999999854210                                     011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      +..|.+.+..++..- ......+..++.  ......++||||++| .|.++.... ..+++...+...+.+  ..+..+|
T Consensus       140 ~~~E~~~l~~l~~~~-~~~~~~iv~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH  217 (429)
T 3kvw_A          140 AAEEIRILEHLRKQD-KDNTMNVIHMLENFTFRNHICMTFELLSM-NLYELIKKNKFQGFSLPLVRKFAHSILQCLDALH  217 (429)
T ss_dssp             HHHHHHHHHHHHTTC-TTSCSCBCCEEEEEEETTEEEEEECCCCC-BHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcc-ccCCcCEEEEEeecccCCeEEEEEeccCC-CHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            233444444444321 112233444443  334667999999986 666654322 233555544443333  3478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCc--EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGR--LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~--l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      ..|++|+|+||.||+++.  ++.  ++|+|||++........         ...+++.++++++..-+..+...|++++.
T Consensus       218 ~~~ivHrDlKp~NILl~~--~~~~~vkL~DFG~a~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~~DiwSlG  286 (429)
T 3kvw_A          218 KNRIIHCDLKPENILLKQ--QGRSGIKVIDFGSSCYEHQRVY---------TYIQSRFYRAPEVILGARYGMPIDMWSLG  286 (429)
T ss_dssp             HHTEECSCCSGGGEEESS--TTSCCEEECCCTTCEETTCCCC---------SSCSCGGGCCHHHHHTBCCCTHHHHHHHH
T ss_pred             HCCeecCCCCHHHeEEcc--CCCcceEEeecccceecCCccc---------ccCCCCCccChHHHhCCCCCchHHHHhHH
Confidence            999999999999999986  555  99999999977654321         12457778899988877777888999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       287 ~il~ellt  294 (429)
T 3kvw_A          287 CILAELLT  294 (429)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88777654

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.53  E-value=8.6e-15  Score=161.76  Aligned_cols=189  Identities=12%  Similarity=0.073  Sum_probs=120.1

Q ss_pred             hhhhccCc--ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHH
Q 004234          291 DVFERFDV--EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (766)
Q Consensus       291 eiF~~fd~--~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E  366 (766)
                      .++..+..  +.||.|++|.||+|+.  +|+.||||+.+...                                      
T Consensus        58 ~~~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--------------------------------------   99 (400)
T 1nxk_A           58 AIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCP--------------------------------------   99 (400)
T ss_dssp             CGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSH--------------------------------------
T ss_pred             cccccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcch--------------------------------------
Confidence            45555543  5799999999999998  59999999874210                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-cccceeeecc---CCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHH
Q 004234          367 CASVLYQEIDYTQEAANAELFASNFKDMDY-VKVPTIFWEY---TTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRY  441 (766)
Q Consensus       367 ~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~---st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~  441 (766)
                               .+.+|...+.+.   . ++++ +.+-.++...   ....+|||||++|++|.++..... ..++...+...
T Consensus       100 ---------~~~~E~~~~~~~---~-~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i  166 (400)
T 1nxk_A          100 ---------KARREVELHWRA---S-QCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEI  166 (400)
T ss_dssp             ---------HHHHHHHHHHHH---T-TSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHH
T ss_pred             ---------hHHHHHHHHHHh---c-CCCCcceEeEEEeecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHH
Confidence                     011222222111   1 2232 3333333221   234689999999999998754321 23555554444


Q ss_pred             HHH--HHHHHHHhCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004234          442 AVE--SYLEQILSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  518 (766)
Q Consensus       442 lv~--~~l~qI~~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~  518 (766)
                      +.+  ..+..+|..|++|+|+||+||+++.. +++.++|+|||++.........       ....+++.++++++...+.
T Consensus       167 ~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~  239 (400)
T 1nxk_A          167 MKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL-------TTPCYTPYYVAPEVLGPEK  239 (400)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC------------------CTTCCGGGSCCCC
T ss_pred             HHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccccCCCCcc-------ccCCCCCCccCHhhcCCCC
Confidence            433  34788999999999999999999842 1578999999999987653321       1123456677888776666


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 004234          519 LVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       519 ~~~~~D~~~l~~~i~~~l~  537 (766)
                      .+...|++++...+.+++.
T Consensus       240 ~~~~~DiwslG~il~ell~  258 (400)
T 1nxk_A          240 YDKSCDMWSLGVIMYILLC  258 (400)
T ss_dssp             SSSHHHHHHHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHh
Confidence            6777899999988777664

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.53  E-value=1e-14  Score=155.13  Aligned_cols=187  Identities=13%  Similarity=0.076  Sum_probs=124.0

Q ss_pred             ccccccceeEEEEEee--cC-----eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KG-----EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G-----~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||.|++|.||+|+.  .|     ..||||+.++.....                                        
T Consensus        52 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------------   91 (333)
T 2i1m_A           52 KTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHAD----------------------------------------   91 (333)
T ss_dssp             EEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHH----------------------------------------
T ss_pred             eEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChH----------------------------------------
Confidence            6899999999999998  23     479999985432111                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-------------cCCCHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-------------LGVDRKRL  438 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-------------~g~d~~~l  438 (766)
                       ..-.+.+|++.+.++.    .+++|.-..-+....+..++||||++|++|.++.....             ..++...+
T Consensus        92 -~~~~~~~E~~~l~~l~----~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  166 (333)
T 2i1m_A           92 -EKEALMSELKIMSHLG----QHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDL  166 (333)
T ss_dssp             -HHHHHHHHHHHHHHHC----CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHH
T ss_pred             -HHHHHHHHHHHHHhhc----CCCCeeeEEEEEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHH
Confidence             0113455666555552    23433222223344567899999999999998654221             12344444


Q ss_pred             HHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004234          439 GRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (766)
Q Consensus       439 a~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l  516 (766)
                      ...+.+  ..+..+|..|++|+|+||+||+++.  ++.++|+|||++..+.......    ..+...+.+.+++++...-
T Consensus       167 ~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~  240 (333)
T 2i1m_A          167 LHFSSQVAQGMAFLASKNCIHRDVAARNVLLTN--GHVAKIGDFGLARDIMNDSNYI----VKGNARLPVKWMAPESIFD  240 (333)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEG--GGEEEBCCCGGGCCGGGCTTSE----ECSSCEECGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcccCCcccceEEECC--CCeEEECcccccccccccccee----ecCCCCCCccccCHHHhcc
Confidence            443333  3478899999999999999999986  8899999999998765432110    0111223456788888777


Q ss_pred             CCCCCCCCHHHHHHHHHHHH
Q 004234          517 GVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       517 G~~~~~~D~~~l~~~i~~~l  536 (766)
                      +..++..|++++...+.+++
T Consensus       241 ~~~~~~~Di~slG~il~el~  260 (333)
T 2i1m_A          241 CVYTVQSDVWSYGILLWEIF  260 (333)
T ss_dssp             CCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCChHHHHHHHHHHHHHHH
Confidence            76777789999987766654

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.53  E-value=6.5e-15  Score=156.70  Aligned_cols=184  Identities=18%  Similarity=0.138  Sum_probs=114.0

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||+|++|.||+|+.+|+.||||+.++.-...                                             +.
T Consensus        19 ~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~---------------------------------------------~~   53 (336)
T 3g2f_A           19 ELIGRGRYGAVYKGSLDERPVAVKVFSFANRQN---------------------------------------------FI   53 (336)
T ss_dssp             EEEEECSSEEEEEEEETTEEEEEEEEEGGGHHH---------------------------------------------HH
T ss_pred             eecccCCCeEEEEEEECCeEEEEEEeeccchhh---------------------------------------------HH
Confidence            689999999999999999999999984321111                                             11


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeee---c--c--CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHH
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFW---E--Y--TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQ  449 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~---e--~--st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~q  449 (766)
                      .|.. +.. ...+ .+++  +.+++.   .  .  ....+|||||++|++|.++...  ...+...+...+.  ...+..
T Consensus        54 ~e~~-~~~-~~~~-~h~~--i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~qi~~~L~~  126 (336)
T 3g2f_A           54 NEKN-IYR-VPLM-EHDN--IARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSL--HTSDWVSSCRLAHSVTRGLAY  126 (336)
T ss_dssp             HHHH-HHT-STTC-CCTT--BCCEEEEEEEECTTSCEEEEEEECCCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHH-HHhc-cCcc--hhhheecccccccCCCceEEEEEecCCCCcHHHHHhh--cccchhHHHHHHHHHHHHHHH
Confidence            1110 000 0011 2222  223321   1  1  1234899999999999997542  2334443333332  234788


Q ss_pred             HHhC---------CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHH--HHHHHHHHhhcCHHHHHHHHHHcC-
Q 004234          450 ILSH---------GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG--LLEAFYGIYEKDADKVLQAMVQMG-  517 (766)
Q Consensus       450 I~~~---------GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~--l~~l~~a~~~~D~~~v~~~l~~lG-  517 (766)
                      +|..         |++|+|+||+||+++.  ++.++|+|||++..+.......  ..........+++.++++++..-+ 
T Consensus       127 LH~~~~~~~~~~~~ivH~Dikp~Nill~~--~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  204 (336)
T 3g2f_A          127 LHTELPRGDHYKPAISHRDLNSRNVLVKN--DGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAV  204 (336)
T ss_dssp             HHCCBCCGGGCBCCEECSSCSGGGEEECT--TSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCC
T ss_pred             HHhhhccccccccceeecccccceEEEcC--CCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCc
Confidence            8988         9999999999999985  7899999999998875431100  000111122467788888887542 


Q ss_pred             ------CCCCCCCHHHHHHHHHHHH
Q 004234          518 ------VLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       518 ------~~~~~~D~~~l~~~i~~~l  536 (766)
                            ..++..|++++...+.+++
T Consensus       205 ~~~~~~~~~~~~DiwslG~il~ell  229 (336)
T 3g2f_A          205 NLRDXESALKQVDMYALGLIYWEIF  229 (336)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchHHHHHHHHHHH
Confidence                  2233468888887776665

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.53  E-value=2.6e-14  Score=149.27  Aligned_cols=185  Identities=15%  Similarity=0.118  Sum_probs=118.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+........                           +.              -.
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------~~--------------~~   66 (285)
T 3is5_A           28 RKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQV---------------------------PM--------------EQ   66 (285)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCS---------------------------CH--------------HH
T ss_pred             ceeccCCCeEEEEEEEccCCceEEEEEeeccccch---------------------------hH--------------HH
Confidence            6899999999999998  58999999875432110                           00              12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh---hcCCCHHHHHHHHHH--HHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~---~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      +.+|++.+.++    . ++++.-..-+.......++||||++|++|.+.....   ...++...+...+.+  ..+..+|
T Consensus        67 ~~~E~~~l~~l----~-hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH  141 (285)
T 3is5_A           67 IEAEIEVLKSL----D-HPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH  141 (285)
T ss_dssp             HHHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----C-CchHHhHHHheecCCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence            33445444443    2 233322222223345679999999999998854321   233555554444433  3478899


Q ss_pred             hCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      ..|++|+|+||.||++++. .++.++|+|||++..+......       ....++..++++++.. +-.+...|++++..
T Consensus       142 ~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~  213 (285)
T 3is5_A          142 SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHS-------TNAAGTALYMAPEVFK-RDVTFKCDIWSAGV  213 (285)
T ss_dssp             HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-----------------CTTGGGCCHHHHT-TCCCHHHHHHHHHH
T ss_pred             hCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcccC-------cCcccccCcCChHHhc-cCCCcccCeehHHH
Confidence            9999999999999999641 2578999999999877553221       1123567778888775 34456678898888


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       214 il~~ll~  220 (285)
T 3is5_A          214 VMYFLLT  220 (285)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7766653

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.53  E-value=5.7e-15  Score=158.98  Aligned_cols=193  Identities=17%  Similarity=0.149  Sum_probs=118.4

Q ss_pred             hccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004234          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (766)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (766)
                      ..|.. +.||.|++|.||+|+.  +|+.||||+.++.......                               +...  
T Consensus        10 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~-------------------------------~~~~--   56 (346)
T 1ua2_A           10 KRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAK-------------------------------DGIN--   56 (346)
T ss_dssp             ---CEEEEEEEETTEEEEEEECSSCCSEEEEEEC-------------------------------------------C--
T ss_pred             cccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhh-------------------------------hhhh--
Confidence            34443 6899999999999998  5999999998543211100                               0000  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHH
Q 004234          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLE  448 (766)
Q Consensus       371 l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~  448 (766)
                          -.+.+|++.+..+    . ++++.-..-+....+..++||||++| ++.+........++...+...+  +...+.
T Consensus        57 ----~~~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~  126 (346)
T 1ua2_A           57 ----RTALREIKLLQEL----S-HPNIIGLLDAFGHKSNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLE  126 (346)
T ss_dssp             ----THHHHHHHHHHHC----C-CTTBCCEEEEECCTTCCEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhhC----C-CCCCCeEEEEEeeCCceEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHH
Confidence                1234455544443    2 33332222222345678999999998 6666543322223433333332  223588


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTA  527 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~  527 (766)
                      .+|..|++|+|+||+||+++.  ++.++|+|||++..+......      .....+++.++++++... ...+...|+++
T Consensus       127 ~lH~~~ivH~Dlkp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~------~~~~~~t~~y~aPE~~~~~~~~~~~~Diws  198 (346)
T 1ua2_A          127 YLHQHWILHRDLKPNNLLLDE--NGVLKLADFGLAKSFGSPNRA------YTHQVVTRWYRAPELLFGARMYGVGVDMWA  198 (346)
T ss_dssp             HHHHTTCCCCCCCGGGEEECT--TCCEEECCCGGGSTTTSCCCC------CCCSCCCCTTCCHHHHTTCSCCCHHHHHHH
T ss_pred             HHHHCCEECCCCCHHHEEEcC--CCCEEEEecccceeccCCccc------CCcccccccccCchHhhCCCCCCchhhhHh
Confidence            899999999999999999985  889999999999877543211      011234666778887753 23455679999


Q ss_pred             HHHHHHHHHH
Q 004234          528 VRRTAQFFLN  537 (766)
Q Consensus       528 l~~~i~~~l~  537 (766)
                      +...+.+++.
T Consensus       199 lG~il~ell~  208 (346)
T 1ua2_A          199 VGCILAELLL  208 (346)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9887776653

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.53  E-value=1.2e-14  Score=154.45  Aligned_cols=187  Identities=15%  Similarity=0.108  Sum_probs=123.8

Q ss_pred             ccccccceeEEEEEee------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.||+|++|.||+|++      +|+.||||+.+......                                   .     
T Consensus        37 ~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~-----   76 (318)
T 3lxp_A           37 RDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQ-----------------------------------H-----   76 (318)
T ss_dssp             EEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHH-----------------------------------H-----
T ss_pred             heecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChH-----------------------------------H-----
Confidence            6899999999988864      48999999985432111                                   0     


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                       .-.+.+|++.+.++.    +..-+.+-.++... ....++||||++|++|.++..  ..+++...+...+.+  ..+..
T Consensus        77 -~~~~~~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~--~~~~~~~~~~~i~~~l~~~l~~  149 (318)
T 3lxp_A           77 -RSGWKQEIDILRTLY----HEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLP--RHSIGLAQLLLFAQQICEGMAY  149 (318)
T ss_dssp             -HHHHHHHHHHHHHCC----CTTBCCEEEEEEETTTTEEEEEECCCTTCBHHHHGG--GSCCCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhCC----CcchhhEEEEEecCCCceEEEEEecccCCcHHHHHh--hCCCCHHHHHHHHHHHHHHHHH
Confidence             112445555555442    22222222333222 234689999999999999753  334565555544433  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|+|+||+||+++.  ++.++|+|||++..++.......   ......++..+++++....+..++..|++++.
T Consensus       150 LH~~~ivH~Dikp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  224 (318)
T 3lxp_A          150 LHAQHYIHRDLAARNVLLDN--DRLVKIGDFGLAKAVPEGHEYYR---VREDGDSPVFWYAPECLKEYKFYYASDVWSFG  224 (318)
T ss_dssp             HHHTTEECSCCSGGGEEECT--TCCEEECCGGGCEECCTTCSEEE---C---CCCCGGGCCHHHHHHCEEEHHHHHHHHH
T ss_pred             HHhCCccCCCCchheEEEcC--CCCEEECCccccccccccccccc---cccCCCCCceeeChHHhcCCCCCcHHHHHHHH
Confidence            99999999999999999985  88999999999998765321100   00112344556777777766666677999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       225 ~il~~ll~  232 (318)
T 3lxp_A          225 VTLYELLT  232 (318)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            88777664

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.53  E-value=4.3e-14  Score=150.05  Aligned_cols=191  Identities=12%  Similarity=0.093  Sum_probs=121.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.++.....-                                  -........+
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~----------------------------------~~~~~~~~~~   61 (322)
T 2ycf_A           16 KTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIG----------------------------------SAREADPALN   61 (322)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECC-------------------------------------------------C
T ss_pred             eEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhc----------------------------------ccccchhhhh
Confidence            6899999999999998  589999999854321100                                  0000011224


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++    .+..-+.+-.++.  ....++||||++|++|.+... ....++...+...+.+  ..+..+|..|
T Consensus        62 ~~~E~~~l~~l----~h~~i~~~~~~~~--~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~  134 (322)
T 2ycf_A           62 VETEIEILKKL----NHPCIIKIKNFFD--AEDYYIVLELMEGGELFDKVV-GNKRLKEATCKLYFYQMLLAVQYLHENG  134 (322)
T ss_dssp             HHHHHHHHHHC----CCTTBCCEEEEEE--SSSEEEEEECCTTEETHHHHS-TTCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----CCCCCceEeeEEc--CCceEEEEecCCCCcHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            55666655554    2222223323332  345799999999999988643 2233454444433332  3478899999


Q ss_pred             ccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCCHHHHHH
Q 004234          455 FFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRR  530 (766)
Q Consensus       455 ffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~---lG~~~~~~D~~~l~~  530 (766)
                      ++|+|+||.||+++.. .++.++|+|||++..+......       ....++..++++++..   .+..+...|++++..
T Consensus       135 ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~  207 (322)
T 2ycf_A          135 IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLM-------RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGV  207 (322)
T ss_dssp             EECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHHH-------HHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHH
T ss_pred             eeccCCCHHHEEEecCCCCCeEEEccCccceeccccccc-------ccccCCcCccCchhhccCCCCCCCchhhHHHHHH
Confidence            9999999999999751 1235999999999988664321       1123566777888764   334456779999988


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       208 il~~l~~  214 (322)
T 2ycf_A          208 ILFICLS  214 (322)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7766653

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.53  E-value=9.9e-15  Score=155.32  Aligned_cols=188  Identities=16%  Similarity=0.101  Sum_probs=120.5

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|++|.||+|++       +|+.||||+.+......                                        
T Consensus        36 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------------   75 (327)
T 2yfx_A           36 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQ----------------------------------------   75 (327)
T ss_dssp             EECC--CSSCEEEEEC--------CCEEEEEECCSSCCHH----------------------------------------
T ss_pred             EEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchh----------------------------------------
Confidence            6899999999999994       36789999874321111                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh------cCCCHHHHHHHHHH-
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE------LGVDRKRLGRYAVE-  444 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~------~g~d~~~la~~lv~-  444 (766)
                       .+.++.+|+..+.++     .++++.-..-+.......++||||++|++|.++.....      ..++...+...+.+ 
T Consensus        76 -~~~~~~~E~~~l~~l-----~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi  149 (327)
T 2yfx_A           76 -DELDFLMEALIISKF-----NHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDI  149 (327)
T ss_dssp             -HHHHHHHHHHHHHHC-----CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHhhC-----CCCCCCeEEEEEcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHH
Confidence             122455666665554     23333222222233456799999999999999764322      22444444444333 


Q ss_pred             -HHHHHHHhCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004234          445 -SYLEQILSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (766)
Q Consensus       445 -~~l~qI~~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~  522 (766)
                       ..+..+|..|++|+|+||.||+++.. ++..++|+|||++..+.......    ......++..+++++....+..++.
T Consensus       150 ~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~  225 (327)
T 2yfx_A          150 ACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYR----KGGCAMLPVKWMPPEAFMEGIFTSK  225 (327)
T ss_dssp             HHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC----------CCGGGSCGGGCCHHHHHHCCCCHH
T ss_pred             HHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEECccccccccccccccc----cCCCcCCCcceeCHhHhcCCCCCch
Confidence             34788999999999999999999841 13469999999987653322110    0111234567888888877777778


Q ss_pred             CCHHHHHHHHHHHH
Q 004234          523 GDTTAVRRTAQFFL  536 (766)
Q Consensus       523 ~D~~~l~~~i~~~l  536 (766)
                      .|++++...+.+++
T Consensus       226 ~Di~slG~il~ell  239 (327)
T 2yfx_A          226 TDTWSFGVLLWEIF  239 (327)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            89999988776654

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.53  E-value=1.3e-14  Score=151.30  Aligned_cols=190  Identities=12%  Similarity=0.047  Sum_probs=122.6

Q ss_pred             ccccccceeEEEEEee--c---CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~---G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|++|.||+|++  +   +..||||+........                                         .
T Consensus        27 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~-----------------------------------------~   65 (298)
T 3pls_A           27 RVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQ-----------------------------------------Q   65 (298)
T ss_dssp             EEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHH-----------------------------------------H
T ss_pred             ceeccCCCceEEEEEEecCCCceeeeeeeeccccccHH-----------------------------------------H
Confidence            6799999999999997  2   3479999874321110                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      .-.|.+|+..+.++    .+..-+.+-.++..-....+++|||++|++|.++........+...+...+.+  ..+..+|
T Consensus        66 ~~~~~~E~~~l~~l----~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH  141 (298)
T 3pls_A           66 VEAFLREGLLMRGL----NHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLA  141 (298)
T ss_dssp             HHHHHHHHHHHHTC----CCTTBCCCCEEECCSSSCCEEEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----CCCCeeeEEEEEecCCCCcEEEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            11344555544443    22222233333322233348999999999999876543444555555444333  3488899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|+||+||+++.  ++.++|+|||++..+..........  .......+.+++++....+..++..|++++...
T Consensus       142 ~~~i~H~dikp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  217 (298)
T 3pls_A          142 EQKFVHRDLAARNCMLDE--SFTVKVADFGLARDILDREYYSVQQ--HRHARLPVKWTALESLQTYRFTTKSDVWSFGVL  217 (298)
T ss_dssp             HTTCCCSCCSGGGEEECT--TCCEEECCTTSSCTTTTGGGGCSCC--SSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHH
T ss_pred             hCCcccCCCCcceEEEcC--CCcEEeCcCCCcccccCCccccccc--CcCCCCCccccChhhhccCCCChhhchhhHHHH
Confidence            999999999999999985  8899999999998765432110000  001123456777887776666677899999887


Q ss_pred             HHHHHH
Q 004234          532 AQFFLN  537 (766)
Q Consensus       532 i~~~l~  537 (766)
                      +.+++.
T Consensus       218 l~~l~~  223 (298)
T 3pls_A          218 LWELLT  223 (298)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            776653

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.53  E-value=2.1e-14  Score=168.38  Aligned_cols=186  Identities=14%  Similarity=0.082  Sum_probs=123.7

Q ss_pred             ccccccceeEEEEEee----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      +.||+|+||.||+|.+    .|+.||||+.+......                              .          ..
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~------------------------------~----------~~  414 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDP------------------------------A----------LK  414 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCG------------------------------G----------GH
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCH------------------------------H----------HH
Confidence            4799999999999976    36899999985542211                              0          01


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      -+|.+|++.+.++.    +..-|.+-.++ + ....+|||||++|++|.++... ...++...+...+.+  ..+..+|.
T Consensus       415 ~~~~~E~~il~~l~----hpnIv~l~~~~-~-~~~~~lv~E~~~~g~L~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~  487 (635)
T 4fl3_A          415 DELLAEANVMQQLD----NPYIVRMIGIC-E-AESWMLVMEMAELGPLNKYLQQ-NRHVKDKNIIELVHQVSMGMKYLEE  487 (635)
T ss_dssp             HHHHHHHHHHHHCC----CTTBCCEEEEE-E-SSSEEEEEECCTTEEHHHHHHH-CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC----CCCEeeEEEEE-e-cCCEEEEEEccCCCCHHHHHhh-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            13556666665552    22222232222 2 3557899999999999987642 223555554444433  34788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      .|++|+|+||.||+++.  ++.++|+|||++..+.........   .......+.++++++...+..+...|++++...+
T Consensus       488 ~~iiHrDLkp~NILl~~--~~~~kL~DFGla~~~~~~~~~~~~---~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l  562 (635)
T 4fl3_A          488 SNFVHRDLAARNVLLVT--QHYAKISDFGLSKALRADENYYKA---QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLM  562 (635)
T ss_dssp             TTCCCSCCSGGGEEEEE--TTEEEECCTTHHHHTTC----------------CGGGSCHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCEeCCCCChHhEEEeC--CCCEEEEEcCCccccccCcccccc---ccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHH
Confidence            99999999999999987  889999999999887654321111   1112235668888888877777788999999877


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       563 ~ell  566 (635)
T 4fl3_A          563 WEAF  566 (635)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.53  E-value=2.1e-14  Score=153.93  Aligned_cols=186  Identities=10%  Similarity=0.024  Sum_probs=124.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||+|+........                                 .+.      .-.
T Consensus        47 ~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~---------------------------------~~~------~~~   87 (335)
T 2owb_A           47 RFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLK---------------------------------PHQ------REK   87 (335)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCS---------------------------------HHH------HHH
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcC---------------------------------HHH------HHH
Confidence            6899999999999999  48999999874332110                                 000      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|+..+..+    . +++|.-..-+.......+++|||++|.+|.++... ...++...+...+.+  ..+..+|..|
T Consensus        88 ~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~  161 (335)
T 2owb_A           88 MSMEISIHRSL----A-HQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKR-RKALTEPEARYYLRQIVLGCQYLHRNR  161 (335)
T ss_dssp             HHHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCCCCeEEEEEecCCeEEEEEecCCCCCHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34455444433    2 23332222222334567999999999999886532 234555554444433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  ++.++|+|||++..+......      .....++..++++++......+...|++++...+.+
T Consensus       162 ivH~dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~  233 (335)
T 2owb_A          162 VIHRDLKLGNLFLNE--DLEVKIGDFGLATKVEYDGER------KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYT  233 (335)
T ss_dssp             EECSCCCGGGEEECT--TCCEEECCCTTCEECCSTTCC------BCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHH
T ss_pred             CEecCCCchhEEEcC--CCCEEEeeccCceecccCccc------ccccCCCccccCHHHhccCCCCchhhHHHHHHHHHH
Confidence            999999999999985  889999999999877532111      011235666778888776666777899999887766


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       234 l~~  236 (335)
T 2owb_A          234 LLV  236 (335)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.53  E-value=3.5e-14  Score=146.80  Aligned_cols=183  Identities=15%  Similarity=0.115  Sum_probs=122.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                  +..      -.
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~------~~   51 (279)
T 2w5a_A           12 YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE----------------------------------AEK------QM   51 (279)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCH----------------------------------HHH------HH
T ss_pred             hhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCH----------------------------------HHH------HH
Confidence            6899999999999999  59999999985432111                                  001      13


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee----ccCCCeEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHHHH--HHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~----e~st~~vLVMEyieG~~L~d~~~l~~---~g~d~~~la~~lv~--~~l  447 (766)
                      +.+|+..+.++    . +++  +++++.    +.....+++|||++|++|.++.....   ..++...+...+.+  ..+
T Consensus        52 ~~~e~~~l~~l----~-h~~--i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l  124 (279)
T 2w5a_A           52 LVSEVNLLREL----K-HPN--IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLAL  124 (279)
T ss_dssp             HHHHHHHHHHC----C-CTT--BCCEEEEEEEGGGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----C-CCC--CCeEEEEEecCCCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHH
Confidence            44555555544    2 233  233332    22456799999999999998754322   12555555444433  347


Q ss_pred             HHHHhCC-----ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004234          448 EQILSHG-----FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (766)
Q Consensus       448 ~qI~~~G-----ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~  522 (766)
                      ..+|..|     ++|+|++|.||+++.  ++.++|+|||++..+......  .    ....++..+++++....+..++.
T Consensus       125 ~~lH~~~~~~~~ivH~dl~p~NIl~~~--~~~~kl~dfg~~~~~~~~~~~--~----~~~~~~~~y~aPE~~~~~~~~~~  196 (279)
T 2w5a_A          125 KECHRRSDGGHTVLHRDLKPANVFLDG--KQNVKLGDFGLARILNHDTSF--A----KTFVGTPYYMSPEQMNRMSYNEK  196 (279)
T ss_dssp             HHHHHHC------CCCCCSGGGEEECS--SSCEEECCCCHHHHC---CHH--H----HHHHSCCTTCCHHHHHCC-CCHH
T ss_pred             HHHhcccCCCCeeEEeccchhhEEEcC--CCCEEEecCchheeecccccc--c----cccCCCccccChHHhccCCCCch
Confidence            8889988     999999999999985  889999999999887654321  1    11235677888888877666667


Q ss_pred             CCHHHHHHHHHHHH
Q 004234          523 GDTTAVRRTAQFFL  536 (766)
Q Consensus       523 ~D~~~l~~~i~~~l  536 (766)
                      .|++++...+.+++
T Consensus       197 ~Di~slG~il~~l~  210 (279)
T 2w5a_A          197 SDIWSLGCLLYELC  210 (279)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            89999988776655

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.52  E-value=1.9e-14  Score=153.74  Aligned_cols=187  Identities=14%  Similarity=0.087  Sum_probs=121.7

Q ss_pred             ccccccceeEEEEEee---------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL---------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l---------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      +.||.|++|+||+|++         +|+.||||+.++.....                                      
T Consensus        41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~--------------------------------------   82 (334)
T 2pvf_A           41 KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK--------------------------------------   82 (334)
T ss_dssp             EEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHH--------------------------------------
T ss_pred             eEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHH--------------------------------------
Confidence            7899999999999986         25789999985542211                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCC
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVD  434 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d  434 (766)
                         ..-++.+|++.+.++.    .+++|.-..-+.......++||||++|++|.++.....               ..++
T Consensus        83 ---~~~~~~~E~~~l~~l~----~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~  155 (334)
T 2pvf_A           83 ---DLSDLVSEMEMMKMIG----KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMT  155 (334)
T ss_dssp             ---HHHHHHHHHHHHHHHC----CCTTBCCEEEEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCC
T ss_pred             ---HHHHHHHHHHHHHHhh----cCCCEeeEEEEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCC
Confidence               0013445555555542    23333222222233456799999999999998754321               1244


Q ss_pred             HHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004234          435 RKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  512 (766)
Q Consensus       435 ~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~  512 (766)
                      ...+...+.+  ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .......+.+++++
T Consensus       156 ~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE  229 (334)
T 2pvf_A          156 FKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTE--NNVMKIADFGLARDINNIDYYKK----TTNGRLPVKWMAPE  229 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECT--TCCEEECCCTTCEECTTTSSEEC----CSCCCCCGGGCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeCCCCccceEEEcC--CCCEEEccccccccccccccccc----cCCCCcccceeChH
Confidence            4444443333  3478899999999999999999985  88999999999987754321000    00112345677788


Q ss_pred             HHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          513 MVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       513 l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +...+..++..|++++...+.+++
T Consensus       230 ~~~~~~~~~~~Di~slG~il~ell  253 (334)
T 2pvf_A          230 ALFDRVYTHQSDVWSFGVLMWEIF  253 (334)
T ss_dssp             HHHHCEECHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCcChHHHHHHHHHHHHHHH
Confidence            777666677789999987766554

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.52  E-value=1e-14  Score=160.34  Aligned_cols=186  Identities=16%  Similarity=0.086  Sum_probs=118.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+.+......                           .              .-.
T Consensus        15 ~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------~--------------~~~   53 (396)
T 4eut_A           15 DILGQGATANVFRGRHKKTGDLFAIKVFNNISFLR---------------------------P--------------VDV   53 (396)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGS---------------------------C--------------HHH
T ss_pred             EEEEcCCCeEEEEEEECCCCcEEEEEEeccccccc---------------------------h--------------HHH
Confidence            5799999999999999  49999999984321100                           0              002


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhhhhc--CCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~~--g~d~~~la~~lv~--~~l~qI  450 (766)
                      +.+|++.+.++    . ++++ .+-.++.+. ....+|||||++|++|.++......  +++...+...+.+  ..+..+
T Consensus        54 ~~~E~~~l~~l----~-hpnIv~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~L  128 (396)
T 4eut_A           54 QMREFEVLKKL----N-HKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHL  128 (396)
T ss_dssp             HHHHHHHHHHC----C-CTTBCCEEEEEECTTTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----C-CCCCCeEEEeeccCCCCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHH
Confidence            23455555444    2 2332 222222222 2256999999999999987543222  2555555444433  347889


Q ss_pred             HhCCccccCCCCCcEEEeec--CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc--------CCCC
Q 004234          451 LSHGFFHADPHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM--------GVLV  520 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~--~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l--------G~~~  520 (766)
                      |..|++|+|+||+||++...  .++.++|+|||++..+......       ....++..++++++...        +..+
T Consensus       129 H~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~~~~~  201 (396)
T 4eut_A          129 RENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF-------VSLYGTEEYLHPDMYERAVLRKDHQKKYG  201 (396)
T ss_dssp             HHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGS-------SCSSSCCTTCCHHHHHHHCC--CHHHHHH
T ss_pred             HHCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCcc-------ccccCCccccCHHHhhccccccccccCCC
Confidence            99999999999999998321  2457999999999987664321       11235666777776653        2233


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~l~  537 (766)
                      ...|++++...+.+++.
T Consensus       202 ~~~DiwSlG~il~el~t  218 (396)
T 4eut_A          202 ATVDLWSIGVTFYHAAT  218 (396)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            45688888877666553

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.52  E-value=2.7e-14  Score=149.19  Aligned_cols=186  Identities=10%  Similarity=0.023  Sum_probs=123.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||+|+........                                 .+..      -.
T Consensus        21 ~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~---------------------------------~~~~------~~   61 (294)
T 2rku_A           21 RFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLK---------------------------------PHQR------EK   61 (294)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCS---------------------------------HHHH------HH
T ss_pred             EEEeecCCEEEEEEEECCCCceEEEEEechhhccC---------------------------------HHHH------HH
Confidence            6899999999999999  48999999874332111                                 0001      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|...+..+    . ++++.-..-+.......+++|||++|.+|.++... ...++...+...+.+  ..+..+|..|
T Consensus        62 ~~~e~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~  135 (294)
T 2rku_A           62 MSMEISIHRSL----A-HQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKR-RKALTEPEARYYLRQIVLGCQYLHRNR  135 (294)
T ss_dssp             HHHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCCEeeeeeeeccCCEEEEEEecCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34455444433    2 23332222222334567999999999999886532 233555554444333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  ++.++|+|||++..+......      .....++..++++++......+...|++++...+.+
T Consensus       136 i~H~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~  207 (294)
T 2rku_A          136 VIHRDLKLGNLFLNE--DLEVKIGDFGLATKVEYDGER------KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYT  207 (294)
T ss_dssp             EECCCCCGGGEEECT--TCCEEECCCTTCEECCSTTCC------BCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHH
T ss_pred             ccccCCChHhEEEcC--CCCEEEEeccCceecccCccc------cccccCCCCcCCcchhccCCCCchhhHHHHHHHHHH
Confidence            999999999999985  889999999999877532211      011235666778888776666777899999887766


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       208 l~~  210 (294)
T 2rku_A          208 LLV  210 (294)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            553

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.52  E-value=3.3e-14  Score=155.26  Aligned_cols=185  Identities=16%  Similarity=0.096  Sum_probs=121.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.+..-.                                     ...      .
T Consensus        60 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-------------------------------------~~~------~   96 (382)
T 2vx3_A           60 SLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKA-------------------------------------FLN------Q   96 (382)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEECSSHH-------------------------------------HHH------H
T ss_pred             EEEeecCCEEEEEEEEcCCCcEEEEEEEeccHH-------------------------------------HHH------H
Confidence            6899999999999998  589999999853210                                     001      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      +..|.+.+..+... .......++.++.  ......+|||||++| +|.++..... .+++...+...+.+  ..+..+|
T Consensus        97 ~~~e~~~l~~l~~~-~~~~~~~iv~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH  174 (382)
T 2vx3_A           97 AQIEVRLLELMNKH-DTEMKYYIVHLKRHFMFRNHLCLVFEMLSY-NLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLA  174 (382)
T ss_dssp             HHHHHHHHHHHHHC-SSGGGGGBCCEEEEEEETTEEEEEEECCCC-BHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc-ccccceeEEEeeeeeccCCceEEEEecCCC-CHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            22344444444321 1111122333332  234677999999987 7777653322 33554444333322  2356666


Q ss_pred             --hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          452 --SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       452 --~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                        ..|++|+|+||+||++....++.++|+|||++..++....         -..+++.++++++..-+..++..|++++.
T Consensus       175 ~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~~~---------~~~~t~~y~aPE~~~~~~~~~~~DiwSlG  245 (382)
T 2vx3_A          175 TPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIY---------QYIQSRFYRSPEVLLGMPYDLAIDMWSLG  245 (382)
T ss_dssp             STTTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTCCCC---------SSCSCGGGCCHHHHTTCCCCTHHHHHHHH
T ss_pred             cCCCCEEcCCCCcccEEEecCCCCcEEEEeccCceecccccc---------cccCCccccChHHHcCCCCCcHHHHHHHH
Confidence              5799999999999999643467899999999988765321         12457778899988776677788999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       246 ~il~ellt  253 (382)
T 2vx3_A          246 CILVEMHT  253 (382)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            87776653

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.52  E-value=1.3e-14  Score=154.42  Aligned_cols=187  Identities=17%  Similarity=0.189  Sum_probs=123.2

Q ss_pred             ccccccceeEEEEEee------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.||+|++|+||+|++      +|+.||||+.++...+.                                         
T Consensus        47 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------------   85 (326)
T 2w1i_A           47 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEH-----------------------------------------   85 (326)
T ss_dssp             EEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHH-----------------------------------------
T ss_pred             eeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHH-----------------------------------------
Confidence            6899999999999983      58999999986532111                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~  448 (766)
                       .-.+.+|++.+.++    . ++++ .+-.++... ....++||||++|++|.++.......++...+...+.+  ..+.
T Consensus        86 -~~~~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~  159 (326)
T 2w1i_A           86 -LRDFEREIEILKSL----Q-HDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME  159 (326)
T ss_dssp             -HHHHHHHHHHHHTC----C-CTTBCCEEEEECC----CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhC----C-CCCeeeEEEEEEecCCCceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence             01244555555443    2 2322 222222111 12568999999999999976543334566655544433  3478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      .+|..|++|+|+||+||+++.  ++.++|+|||++..+........   ......++..+++++....+..++..|++++
T Consensus       160 ~LH~~~ivH~dikp~NIli~~--~~~~kL~Dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  234 (326)
T 2w1i_A          160 YLGTKRYIHRDLATRNILVEN--ENRVKIGDFGLTKVLPQDKEYYK---VKEPGESPIFWYAPESLTESKFSVASDVWSF  234 (326)
T ss_dssp             HHHHTTEECSCCCGGGEEEEE--TTEEEECCCTTCEECCSSCSEEE---CSSCCSCCGGGCCHHHHHHCEEEHHHHHHHH
T ss_pred             HHHhCCEeccCCCcceEEEcC--CCcEEEecCcchhhccccccccc---cccCCCCceeEECchhhcCCCCCchhhHHHH
Confidence            899999999999999999986  88999999999988754321000   0001123344667777766656677899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       235 G~il~el~t  243 (326)
T 2w1i_A          235 GVVLYELFT  243 (326)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            988777764

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.52  E-value=5.8e-14  Score=147.91  Aligned_cols=136  Identities=12%  Similarity=0.013  Sum_probs=93.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.++.....                                 .+.      .-.
T Consensus        37 ~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~---------------------------------~~~------~~~   77 (286)
T 3uqc_A           37 IFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLP---------------------------------DDV------LQE   77 (286)
T ss_dssp             EEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSC---------------------------------HHH------HHH
T ss_pred             EEEcccCCeEEEEEEecCCCceEEEEEECcccccC---------------------------------HHH------HHH
Confidence            7899999999999999  49999999987653221                                 000      113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      |.+|++.+.++     .+++|.-..-+.+..+..++||||++|++|.++..   .+.....+...+.+  ..+..+|..|
T Consensus        78 ~~~e~~~l~~l-----~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~---~~~~~~~~~~i~~ql~~aL~~lH~~g  149 (286)
T 3uqc_A           78 TLSRTLRLSRI-----DKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVAD---TSPSPVGAIRAMQSLAAAADAAHRAG  149 (286)
T ss_dssp             HHHHHHHHHTC-----CCTTBCCEEEEEEETTEEEEEEECCCEEEHHHHHT---TCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcC-----CCCCcceeeEEEEECCcEEEEEEecCCCCHHHHHh---cCCChHHHHHHHHHHHHHHHHHHHCC
Confidence            44555544333     23333222222334567899999999999999753   23344444443333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecce
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMM  483 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv  483 (766)
                      ++|+|+||+||+++.  +|.++|.++|.+
T Consensus       150 ivH~Dikp~NIll~~--~g~~kl~~~~~~  176 (286)
T 3uqc_A          150 VALSIDHPSRVRVSI--DGDVVLAYPATM  176 (286)
T ss_dssp             CCCCCCSGGGEEEET--TSCEEECSCCCC
T ss_pred             CccCCCCcccEEEcC--CCCEEEEecccc
Confidence            999999999999986  889998877654

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.52  E-value=2.5e-14  Score=153.06  Aligned_cols=185  Identities=14%  Similarity=0.109  Sum_probs=115.8

Q ss_pred             ccccccceeEEEEEee--cCeeE----EEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEV----VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~V----AVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.||+|++|.||+|++  +|+.|    ++|..+......                           .             
T Consensus        21 ~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~---------------------------~-------------   60 (327)
T 3lzb_A           21 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK---------------------------A-------------   60 (327)
T ss_dssp             EEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCC---------------------------C-------------
T ss_pred             EEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHH---------------------------H-------------
Confidence            6899999999999998  56654    666553322111                           0             


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                       .-.+.+|+..+.++    .+..-+.+-.++  .....+++|||++|++|.++.......++...+...+.+  ..+..+
T Consensus        61 -~~~~~~E~~~l~~l----~hp~iv~~~~~~--~~~~~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~L  133 (327)
T 3lzb_A           61 -NKEILDEAYVMASV----DNPHVCRLLGIC--LTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYL  133 (327)
T ss_dssp             -HHHHHHHHHHHTTC----CBTTBCCCCEEE--ESSSEEEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhC----CCCCeeEEEEEE--ecCCceEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence             11234455444433    222122222222  245688999999999999876544444565555544433  347889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|+||.||+++.  ++.++|+|||++..+.........    ....+.+.+++++...-+..++..|++++..
T Consensus       134 H~~~ivH~Dikp~NIl~~~--~~~~kL~DfG~a~~~~~~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~  207 (327)
T 3lzb_A          134 EDRRLVHRDLAARNVLVKT--PQHVKITDFGLAKLLGAEEKEYHA----EGGKVPIKWMALESILHRIYTHQSDVWSYGV  207 (327)
T ss_dssp             HHTTCCCSCCCGGGEEEEE--TTEEEECCTTC--------------------CCCGGGSCHHHHHHCCCCHHHHHHHHHH
T ss_pred             hhCCCcCCCCCHHHEEEcC--CCCEEEccCcceeEccCccccccc----cCCCccccccCHHHHcCCCCChHHHHHHHHH
Confidence            9999999999999999986  899999999999887654332211    1123455678888887766677789999988


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       208 il~ell  213 (327)
T 3lzb_A          208 TVWELM  213 (327)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776655

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.52  E-value=9.3e-15  Score=165.81  Aligned_cols=185  Identities=18%  Similarity=0.166  Sum_probs=123.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.++.....                          .+       ..      -.
T Consensus        22 ~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~--------------------------~~-------~~------~~   62 (476)
T 2y94_A           22 DTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRS--------------------------LD-------VV------GK   62 (476)
T ss_dssp             EEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHH--------------------------TT-------TH------HH
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccC--------------------------HH-------HH------HH
Confidence            6899999999999998  59999999984311000                          00       00      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+..+    . +++|.-..-+.+..+..+|||||++|++|.++... ...++...+...+.+  ..+..+|..|
T Consensus        63 ~~~Ei~~l~~l----~-HpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH~~g  136 (476)
T 2y94_A           63 IRREIQNLKLF----R-HPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICK-NGRLDEKESRRLFQQILSGVDYCHRHM  136 (476)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEEECSSEEEEEEECCSSEEHHHHTTS-SSSCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhC----C-CCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34455544433    2 23332222222345667999999999999987532 223454444443333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~-~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||+||+++.  ++.++|+|||++..++....       .....+++.++++++..-... ++..|++++...+.
T Consensus       137 ivHrDLkp~NIll~~--~~~vkL~DFG~a~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~  207 (476)
T 2y94_A          137 VVHRDLKPENVLLDA--HMNAKIADFGLSNMMSDGEF-------LRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILY  207 (476)
T ss_dssp             EECSCCSGGGEEECT--TCCEEECCCSSCEECCTTCC-------BCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHH
T ss_pred             CCcccccHHHEEEec--CCCeEEEeccchhhcccccc-------ccccCCCcCeEChhhccCCCCCCCcceehhhHHHHH
Confidence            999999999999985  88999999999998765321       112246778888888865433 45679999998777


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       208 ellt  211 (476)
T 2y94_A          208 ALLC  211 (476)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            6653

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.52  E-value=2.6e-14  Score=148.39  Aligned_cols=183  Identities=16%  Similarity=0.174  Sum_probs=106.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+.++......                                         +..
T Consensus        13 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-----------------------------------------~~~   51 (290)
T 3fme_A           13 MELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQE-----------------------------------------QKR   51 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHH-----------------------------------------HHH
T ss_pred             HhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHH-----------------------------------------HHH
Confidence            6899999999999998  699999999854322110                                         001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l---~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      +..|...   ..... .++++.-..-+....+..++||||++| ++.++...   ....++...+...+.+  ..+..+|
T Consensus        52 ~~~~~~~---~~~~~-~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH  126 (290)
T 3fme_A           52 LLMDLDI---SMRTV-DCPFTVTFYGALFREGDVWICMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH  126 (290)
T ss_dssp             HHHHHHH---HHTTC-CCTTBCCEEEEEECSSSEEEEEECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---HHHhC-CCCeEEEEeeeeeccCCEEEEEehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            1111111   11122 233332222222345678999999997 66554321   2233555544444333  3478889


Q ss_pred             hC-CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH----cCCCCCCCCHH
Q 004234          452 SH-GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ----MGVLVPTGDTT  526 (766)
Q Consensus       452 ~~-GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~----lG~~~~~~D~~  526 (766)
                      .. |++|+|+||.||+++.  ++.++|+|||++..+.......       ...+++.++++++..    .+..++..|++
T Consensus       127 ~~~~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~-------~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~  197 (290)
T 3fme_A          127 SKLSVIHRDVKPSNVLINA--LGQVKMCDFGISGYLVDDVAKD-------IDAGCKPYMAPERINPELNQKGYSVKSDIW  197 (290)
T ss_dssp             HHSCCCCCCCSGGGCEECT--TCCEEBCCC----------------------CCCCCCSCHHHHSCCTTC--CCHHHHHH
T ss_pred             hcCCeecCCCCHHHEEECC--CCCEEEeecCCccccccccccc-------ccCCCccccChhhcChhhcCcCCCcHHHHH
Confidence            88 9999999999999985  7899999999998876543321       124567788888863    33345567889


Q ss_pred             HHHHHHHHHH
Q 004234          527 AVRRTAQFFL  536 (766)
Q Consensus       527 ~l~~~i~~~l  536 (766)
                      ++...+.+++
T Consensus       198 slG~il~~l~  207 (290)
T 3fme_A          198 SLGITMIELA  207 (290)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887776654

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.52  E-value=1.4e-14  Score=153.99  Aligned_cols=182  Identities=12%  Similarity=0.125  Sum_probs=110.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.+......                           ...              .
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------~~~--------------~   49 (317)
T 2pmi_A           11 EKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEG---------------------------TPS--------------T   49 (317)
T ss_dssp             --------CEEEEEECSSSCCEEEEEEEECCSTTC---------------------------SCH--------------H
T ss_pred             eEECCCCCEEEEEEEECCCCcEEEEEEeecccccc---------------------------cHH--------------H
Confidence            6899999999999998  59999999885432111                           000              1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhh-----cCCCHHHHHHHH--HHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-----LGVDRKRLGRYA--VESYL  447 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~-----~g~d~~~la~~l--v~~~l  447 (766)
                      +.+|++.+.++    .+ ++  +++++.  ...+..++||||++| +|.++.....     .+++...+...+  +-..+
T Consensus        50 ~~~E~~~l~~l----~h-p~--iv~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL  121 (317)
T 2pmi_A           50 AIREISLMKEL----KH-EN--IVRLYDVIHTENKLTLVFEFMDN-DLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGL  121 (317)
T ss_dssp             HHHHHHHHTTC----CB-TT--BCCEEEEECCTTEEEEEEECCCC-BHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CC-CC--cceEEEEEEECCeEEEEEEecCC-CHHHHHHhccccccccCCCHHHHHHHHHHHHHHH
Confidence            22344433332    22 33  233332  334567999999997 7777543322     224444433332  23347


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHH
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTT  526 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~  526 (766)
                      ..+|..|++|+|+||+||+++.  +|.++|+|||++..+......      .....+++.++++++..- ...++..|++
T Consensus       122 ~~lH~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~t~~y~aPE~~~~~~~~~~~~Diw  193 (317)
T 2pmi_A          122 AFCHENKILHRDLKPQNLLINK--RGQLKLGDFGLARAFGIPVNT------FSSEVVTLWYRAPDVLMGSRTYSTSIDIW  193 (317)
T ss_dssp             HHHHHTTEECCCCCGGGEEECT--TCCEEECCCSSCEETTSCCCC------CCCCCSCCTTCCHHHHTTCCCCCTHHHHH
T ss_pred             HHHHHCCeeeCCCChHHeEEcC--CCCEEECcCccceecCCCccc------CCCCcccccccCchHhhCCCCCCcHHHHH
Confidence            8899999999999999999985  889999999999876532110      011134667788887753 3456677999


Q ss_pred             HHHHHHHHHHH
Q 004234          527 AVRRTAQFFLN  537 (766)
Q Consensus       527 ~l~~~i~~~l~  537 (766)
                      ++...+.+++.
T Consensus       194 slG~il~el~~  204 (317)
T 2pmi_A          194 SCGCILAEMIT  204 (317)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99887776653

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.51  E-value=7.8e-15  Score=152.57  Aligned_cols=186  Identities=15%  Similarity=0.122  Sum_probs=123.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|++  +|+.||||+.+......-...                            .+.       --.
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~----------------------------~~~-------~~~   69 (287)
T 4f0f_A           25 KQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEM----------------------------IEK-------FQE   69 (287)
T ss_dssp             EECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHH----------------------------HCC-------SHH
T ss_pred             hccccCCceeEEEEEEcCCceEEEEEEeeccccccchhH----------------------------HHH-------HHH
Confidence            6899999999999999  699999999855432210000                            000       012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++    . +  -.+++++..+.+..+++|||++|++|.+........++...+...+.+  ..+..+|..|
T Consensus        70 ~~~E~~~l~~l----~-h--~~i~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~  142 (287)
T 4f0f_A           70 FQREVFIMSNL----N-H--PNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQN  142 (287)
T ss_dssp             HHHHHHHHTTC----C-C--TTBCCEEEEETTTTEEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHhC----C-C--CCchhhheeecCCCeEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCC
Confidence            34455444443    2 2  235555655667779999999999998765433344555555444433  3478899999


Q ss_pred             --ccccCCCCCcEEEeecCCCc-----EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH--cCCCCCCCCH
Q 004234          455 --FFHADPHPGNIAVDDVNGGR-----LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ--MGVLVPTGDT  525 (766)
Q Consensus       455 --ffHaDpHPGNILV~~~~~g~-----l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~--lG~~~~~~D~  525 (766)
                        ++|+|+||.||+++.  ++.     ++|+|||++........         -..+++.+++++...  .+..++..|+
T Consensus       143 ~~ivH~dikp~Nil~~~--~~~~~~~~~kl~Dfg~~~~~~~~~~---------~~~g~~~y~aPE~~~~~~~~~~~~~Di  211 (287)
T 4f0f_A          143 PPIVHRDLRSPNIFLQS--LDENAPVCAKVADFGLSQQSVHSVS---------GLLGNFQWMAPETIGAEEESYTEKADT  211 (287)
T ss_dssp             SCCBCSCCSGGGEEESC--CCTTCSCCEEECCCTTCBCCSSCEE---------CCCCCCTTSCGGGSSCSSCEECHHHHH
T ss_pred             CCeecCCCCcceEEEec--cCCCCceeEEeCCCCcccccccccc---------ccCCCccccCchhhccCCCCcCchhhH
Confidence              999999999999975  444     99999999986654321         123566677777652  2223456789


Q ss_pred             HHHHHHHHHHHH
Q 004234          526 TAVRRTAQFFLN  537 (766)
Q Consensus       526 ~~l~~~i~~~l~  537 (766)
                      +++...+.+++.
T Consensus       212 ~slG~~l~~l~~  223 (287)
T 4f0f_A          212 YSFAMILYTILT  223 (287)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            998887766653

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.51  E-value=3.6e-14  Score=147.69  Aligned_cols=185  Identities=14%  Similarity=0.102  Sum_probs=120.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..||.|++|+||+|+.  +|+.||||+.+..-...                                    ..      .
T Consensus        28 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~------------------------------------~~------~   65 (295)
T 2clq_A           28 VVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRY------------------------------------SQ------P   65 (295)
T ss_dssp             CEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---------------------------------------H------H
T ss_pred             EEEeecCcEEEEEEEECCCCeEEEEEEccCCchHH------------------------------------HH------H
Confidence            5799999999999998  68999999875431110                                    01      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc--CCCHHHHHHHH--HHHHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRYA--VESYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~--g~d~~~la~~l--v~~~l~qI~~  452 (766)
                      +.+|+..+..+    . ++++.-..-+....+..+++|||++|++|.++......  ..+...+...+  +...+..+|.
T Consensus        66 ~~~e~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~  140 (295)
T 2clq_A           66 LHEEIALHKHL----K-HKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHD  140 (295)
T ss_dssp             HHHHHHHHHTC----C-CTTBCCEEEEEEETTEEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----C-CCCEeeEeeEEEeCCcEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHh
Confidence            33444433333    2 23332222222335667999999999999987643321  22344433322  3344788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC--CCCCCCHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV--LVPTGDTTAVRR  530 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~--~~~~~D~~~l~~  530 (766)
                      .|++|+|++|.||+++. .++.++|+|||++..+......      .....++..++++++...+.  .+...|++++..
T Consensus       141 ~~i~H~dl~p~Nil~~~-~~~~~kl~Dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~  213 (295)
T 2clq_A          141 NQIVHRDIKGDNVLINT-YSGVLKISDFGTSKRLAGINPC------TETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGC  213 (295)
T ss_dssp             TTEECCCCSGGGEEEET-TTCCEEECCTTTCEESCC-----------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHH
T ss_pred             CCEEccCCChhhEEEEC-CCCCEEEeecccccccCCCCCc------ccccCCCccccChhhhcCCCCCCCcHHHHHHHHH
Confidence            99999999999999974 4789999999999887643211      11234567788888876543  455679999988


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       214 il~~l~~  220 (295)
T 2clq_A          214 TIIEMAT  220 (295)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766653

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.51  E-value=1.1e-13  Score=146.22  Aligned_cols=184  Identities=13%  Similarity=0.098  Sum_probs=123.2

Q ss_pred             ccccccceeEEEEEee---cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL---KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      +.||+|++|.||+|+.   +|+.||||+.+..-                                     ....      
T Consensus        20 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-------------------------------------~~~~------   56 (339)
T 1z57_A           20 DTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-------------------------------------RYCE------   56 (339)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-------------------------------------HHHH------
T ss_pred             EEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-------------------------------------chhH------
Confidence            6899999999999987   58999999984321                                     0111      


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHH
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~--~~l~qI  450 (766)
                      .+.+|.+.+..+.+... .....++.++.  +.....++||||+ |+++.++..... ..++...+...+.+  ..+..+
T Consensus        57 ~~~~e~~~l~~l~~~~~-~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~l  134 (339)
T 1z57_A           57 AARSEIQVLEHLNTTDP-NSTFRCVQMLEWFEHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFL  134 (339)
T ss_dssp             HHHHHHHHHHHHHHHCT-TCTTCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcCC-CCceeeEeeecccccCCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            23344444455443211 12223344433  3345679999999 777877643222 23455544444333  347889


Q ss_pred             HhCCccccCCCCCcEEEeecC-----------------CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVN-----------------GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~-----------------~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l  513 (766)
                      |..|++|+|+||+||+++...                 ++.++|+|||++...+....         ...++..++++++
T Consensus       135 H~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~---------~~~gt~~y~aPE~  205 (339)
T 1z57_A          135 HSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHHS---------TLVSTRHYRAPEV  205 (339)
T ss_dssp             HHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCCC---------SSCSCGGGCCHHH
T ss_pred             HHCCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCccccc---------cccCCccccChHH
Confidence            999999999999999997522                 56799999999987654321         1245778888888


Q ss_pred             HHcCCCCCCCCHHHHHHHHHHHH
Q 004234          514 VQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       514 ~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ...+..+...|++++...+.+++
T Consensus       206 ~~~~~~~~~~Di~slG~il~el~  228 (339)
T 1z57_A          206 ILALGWSQPCDVWSIGCILIEYY  228 (339)
T ss_dssp             HTTSCCCTHHHHHHHHHHHHHHH
T ss_pred             hhCCCCCcchhhHHHHHHHHHHH
Confidence            87666677789999988776665

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.51  E-value=3.7e-14  Score=151.85  Aligned_cols=185  Identities=16%  Similarity=0.143  Sum_probs=118.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.++.-...                                         ...+
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------~~~~   55 (353)
T 2b9h_A           17 SLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPL-----------------------------------------FALR   55 (353)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHH-----------------------------------------HHHH
T ss_pred             eEEcCCCCeEEEEEEECCCCcEEEEEeecccccch-----------------------------------------HHHH
Confidence            6899999999999998  59999999885432111                                         0113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec-------cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWE-------YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-------~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l  447 (766)
                      +.+|++.+.++    . +++  +++++.-       .....+++|||++| +|.++..  ...++...+...+.+  ..+
T Consensus        56 ~~~E~~~l~~l----~-h~~--iv~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~--~~~~~~~~~~~~~~qi~~~L  125 (353)
T 2b9h_A           56 TLREIKILKHF----K-HEN--IITIFNIQRPDSFENFNEVYIIQELMQT-DLHRVIS--TQMLSDDHIQYFIYQTLRAV  125 (353)
T ss_dssp             HHHHHHHHHHC----C-CTT--BCCEEEECCCSCSTTCCCEEEEECCCSE-EHHHHHH--HCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----c-CCC--cCCeeeeecccccCccceEEEEEeccCc-cHHHHHh--hcCCCHHHHHHHHHHHHHHH
Confidence            34455555444    2 232  2233321       12567999999986 6766543  234555555444433  347


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHH----HHHHhhcCHHHHHHHHHHc-CCCCCC
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA----FYGIYEKDADKVLQAMVQM-GVLVPT  522 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l----~~a~~~~D~~~v~~~l~~l-G~~~~~  522 (766)
                      ..+|..|++|+|+||+||+++.  ++.++|+|||++..+...........    -..-..++..++++++... +..+..
T Consensus       126 ~~LH~~~ivH~Dlkp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  203 (353)
T 2b9h_A          126 KVLHGSNVIHRDLKPSNLLINS--NCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRA  203 (353)
T ss_dssp             HHHHHTTEECSCCCGGGEEECT--TCCEEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHH
T ss_pred             HHHHHCCeecCCCCHHHeEEcC--CCcEEEEecccccccccccccccCccccccchhhccccccccCCeeeccCCCccch
Confidence            8899999999999999999985  88999999999998865432211100    0011235677888887654 445666


Q ss_pred             CCHHHHHHHHHHHH
Q 004234          523 GDTTAVRRTAQFFL  536 (766)
Q Consensus       523 ~D~~~l~~~i~~~l  536 (766)
                      .|++++...+.+++
T Consensus       204 ~Di~slG~il~~l~  217 (353)
T 2b9h_A          204 MDVWSCGCILAELF  217 (353)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            79999988776655

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.51  E-value=1e-14  Score=152.23  Aligned_cols=190  Identities=16%  Similarity=0.091  Sum_probs=109.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+........                                   .      .-+
T Consensus        21 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~------~~~   59 (303)
T 2vwi_A           21 EVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQT-----------------------------------S------MDE   59 (303)
T ss_dssp             EECC---CCCEEEEEC----CEEEEECCC---------------------------------------------------
T ss_pred             heeccccceEEEEEEECCCCcEEEEEEEEhhhcch-----------------------------------h------HHH
Confidence            6899999999999998  69999999874321100                                   0      001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-------hhcCCCHHHHHHHHHH--HHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-------DELGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-------~~~g~d~~~la~~lv~--~~l  447 (766)
                      +.+|+..+.++    . ++++.-..-+.......++||||++|++|.++...       ....++...+...+.+  ..+
T Consensus        60 ~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l  134 (303)
T 2vwi_A           60 LLKEIQAMSQC----H-HPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGL  134 (303)
T ss_dssp             ------CCCCC----C-CTTBCCEEEEEESSSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhc----C-CCCEeeEEEEEeecCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHH
Confidence            22333322221    1 23322222222345678999999999999986542       1122454444444333  347


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHH
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTT  526 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~  526 (766)
                      ..+|..|++|+|++|.||+++.  ++.++|+|||++..+.......- ........+++.++++++... +..+...|++
T Consensus       135 ~~lH~~~i~H~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~  211 (303)
T 2vwi_A          135 EYLHKNGQIHRDVKAGNILLGE--DGSVQIADFGVSAFLATGGDITR-NKVRKTFVGTPCWMAPEVMEQVRGYDFKADIW  211 (303)
T ss_dssp             HHHHHTTCCCCCCSGGGEEECT--TCCEEECCCHHHHHCC----------------CCCTTCCHHHHHHHHCCCTHHHHH
T ss_pred             HHHHhCCCCCCCCChhhEEEcC--CCCEEEEeccchheeccCCCccc-hhhhcccCCCccccCHHHhccccCCCchhhHH
Confidence            8899999999999999999985  88999999999987754321110 001112235666777777654 3456678999


Q ss_pred             HHHHHHHHHHH
Q 004234          527 AVRRTAQFFLN  537 (766)
Q Consensus       527 ~l~~~i~~~l~  537 (766)
                      ++...+.+++.
T Consensus       212 slG~il~~l~~  222 (303)
T 2vwi_A          212 SFGITAIELAT  222 (303)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99887766653

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.51  E-value=1.5e-14  Score=157.93  Aligned_cols=192  Identities=15%  Similarity=0.081  Sum_probs=123.9

Q ss_pred             cccccc--ceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          299 EPIAAA--SLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       299 ~PIgsa--SiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      +.||.|  ++|.||+|+.  +|+.||||+.+......                                  +...     
T Consensus        31 ~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~-----   71 (389)
T 3gni_B           31 TVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSN----------------------------------EMVT-----   71 (389)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCH----------------------------------HHHH-----
T ss_pred             ecccCCcCCceEEEEEEEcCCCCEEEEEEecccccCh----------------------------------HHHH-----
Confidence            689999  9999999999  59999999985432111                                  1111     


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHH
Q 004234          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                       .+.+|++.+..+    . +++|.-..-+....+..++||||++|++|.++.... ...++...+...+.+  ..+..+|
T Consensus        72 -~~~~E~~~l~~l----~-h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH  145 (389)
T 3gni_B           72 -FLQGELHVSKLF----N-HPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH  145 (389)
T ss_dssp             -HHHHHHHHHHHC----C-CTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhC----C-CCCCCcEeEEEEECCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence             233455544443    2 233322222223456679999999999999875432 234555555444433  3478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHH-HHHHHHHHHhhcCHHHHHHHHHHc--CCCCCCCCHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIRE-GLLEAFYGIYEKDADKVLQAMVQM--GVLVPTGDTTAV  528 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~-~l~~l~~a~~~~D~~~v~~~l~~l--G~~~~~~D~~~l  528 (766)
                      ..|++|+|+||.||+++.  ++.++|+|||.+..+...... ....-......++..++++++..-  ...++..|++++
T Consensus       146 ~~~ivHrDlkp~NIll~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~Diwsl  223 (389)
T 3gni_B          146 HMGYVHRSVKASHILISV--DGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSV  223 (389)
T ss_dssp             HTTEECCCCSGGGEEECT--TCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHH
T ss_pred             hCCeecCCCCHHHEEEcC--CCCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHH
Confidence            999999999999999985  889999999987654321100 000000011134566788888765  345667899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       224 G~il~el~~  232 (389)
T 3gni_B          224 GITACELAN  232 (389)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988777654

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.51  E-value=6.1e-14  Score=147.90  Aligned_cols=190  Identities=14%  Similarity=0.119  Sum_probs=119.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.++.....                                          .-.
T Consensus        35 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~------------------------------------------~~~   72 (317)
T 2buj_A           35 QKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQD------------------------------------------REE   72 (317)
T ss_dssp             EEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHH------------------------------------------HHH
T ss_pred             EEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHH------------------------------------------HHH
Confidence            6899999999999998  69999999874321100                                          012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec---cCCCeEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHHHH--HHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWE---YTTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYAVE--SYLE  448 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e---~st~~vLVMEyieG~~L~d~~~l---~~~g~d~~~la~~lv~--~~l~  448 (766)
                      +.+|+..+..+    .+..-+.+-..+..   .....+++|||++|++|.++...   ....++...+...+.+  ..+.
T Consensus        73 ~~~E~~~l~~l----~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~  148 (317)
T 2buj_A           73 AQREADMHRLF----NHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLE  148 (317)
T ss_dssp             HHHHHHHHHTC----CCTTBCCCCEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhc----CCCCeeeEEEEEEeccCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            34455444433    22222222222221   22356899999999999986543   1233555555444433  3478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChh---hHHHHHHHHHHHhhcCHHHHHHHHHHcC---CCCCC
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN---IREGLLEAFYGIYEKDADKVLQAMVQMG---VLVPT  522 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~---~r~~l~~l~~a~~~~D~~~v~~~l~~lG---~~~~~  522 (766)
                      .+|..|++|+|+||.||+++.  ++.++|+|||++......   ........-.....+++.++++++....   ..++.
T Consensus       149 ~LH~~~ivH~dlkp~NIl~~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~  226 (317)
T 2buj_A          149 AIHAKGYAHRDLKPTNILLGD--EGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDER  226 (317)
T ss_dssp             HHHHTTEECCCCCGGGEEECT--TSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTH
T ss_pred             HHHhCCcccCCCCHHHEEEcC--CCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCch
Confidence            899999999999999999985  889999999998876432   1111111111223456777778776432   13567


Q ss_pred             CCHHHHHHHHHHHH
Q 004234          523 GDTTAVRRTAQFFL  536 (766)
Q Consensus       523 ~D~~~l~~~i~~~l  536 (766)
                      .|++++...+.+++
T Consensus       227 ~Di~slG~il~el~  240 (317)
T 2buj_A          227 TDVWSLGCVLYAMM  240 (317)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            79999988776665

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.51  E-value=3.9e-14  Score=152.22  Aligned_cols=181  Identities=14%  Similarity=0.112  Sum_probs=105.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+.....                                              
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----------------------------------------------   68 (336)
T 3fhr_A           35 QVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKA----------------------------------------------   68 (336)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESSHHH----------------------------------------------
T ss_pred             eeeeeCCCeEEEEEEECCCCCEEEEEEecCcHHH----------------------------------------------
Confidence            5799999999999999  5999999997432100                                              


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC---CCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s---t~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~--~~l~qI  450 (766)
                       ..|....   .....+..-+.+-.++....   ...++||||++|++|.++..... ..++...+...+.+  ..+..+
T Consensus        69 -~~e~~~~---~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~L  144 (336)
T 3fhr_A           69 -RQEVDHH---WQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFL  144 (336)
T ss_dssp             -HHHHHHH---HHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHH---HHhcCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence             0011111   11122222233334443322   22689999999999998754322 23555555444433  347889


Q ss_pred             HhCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      |..|++|+|+||.||+++.. .++.++|+|||++..........        ..+++.++++++...+..++..|++++.
T Consensus       145 H~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~--------~~~t~~y~aPE~~~~~~~~~~~Di~slG  216 (336)
T 3fhr_A          145 HSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQT--------PCYTPYYVAPEVLGPEKYDKSCDMWSLG  216 (336)
T ss_dssp             HHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC------------------------------CHHHHHHHHHHHH
T ss_pred             HhCCeecCCCCHHHEEEEecCCCceEEEeccccceecccccccc--------CCCCcCccChhhhCCCCCCchhhHHHHH
Confidence            99999999999999999741 14569999999998776543221        2346778888887655556667888888


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       217 ~il~~l~~  224 (336)
T 3fhr_A          217 VIMYILLC  224 (336)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766553

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.51  E-value=3e-14  Score=147.11  Aligned_cols=184  Identities=18%  Similarity=0.154  Sum_probs=114.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.++.....                   .       +       .      .-.
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-------------------~-------~-------~------~~~   57 (276)
T 2h6d_A           17 DTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRS-------------------L-------D-------V------VGK   57 (276)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH-------------------T-------T-------C------HHH
T ss_pred             eeecCCCCeEEEEEEECCCCceEEEEEeccccccc-------------------h-------h-------H------HHH
Confidence            6899999999999998  59999999874321000                   0       0       0      012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|+..+..+    . ++++.-..-+....+..+++|||++|++|.++.... ..++...+...+.+  ..+..+|..|
T Consensus        58 ~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~  131 (276)
T 2h6d_A           58 IKREIQNLKLF----R-HPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKH-GRVEEMEARRLFQQILSAVDYCHRHM  131 (276)
T ss_dssp             HHHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcC----C-CCCEeEEEEEEecCCeEEEEEeccCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34455544443    2 233322222223456679999999999999875422 23454444443333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~-~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||.||+++.  ++.++|+|||++..+......       ....+++.+++++....... ++..|++++...+.
T Consensus       132 i~H~dl~p~Nil~~~--~~~~~l~dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~  202 (276)
T 2h6d_A          132 VVHRDLKPENVLLDA--HMNAKIADFGLSNMMSDGEFL-------RTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILY  202 (276)
T ss_dssp             SSCCCCCGGGEEECT--TSCEEECCCCGGGCCCC--------------------CCTGGGTTSCCCHHHHHHHHHHHHHH
T ss_pred             CccCCCChhhEEECC--CCCEEEeecccccccCCCcce-------ecccCCccccCHHHHcCCCCCCccchHHHHHHHHH
Confidence            999999999999985  889999999999887654321       11234556667766554332 34568888887666


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       203 ~l~  205 (276)
T 2h6d_A          203 ALL  205 (276)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.51  E-value=4.8e-15  Score=152.79  Aligned_cols=183  Identities=19%  Similarity=0.220  Sum_probs=117.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.++.....                                   ..+      .
T Consensus        13 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~------~   51 (276)
T 2yex_A           13 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-----------------------------------CPE------N   51 (276)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTT-----------------------------------HHH------H
T ss_pred             EEeecCCCcEEEEEEECCCCcEEEEEEeeeccchh-----------------------------------hhH------H
Confidence            6899999999999998  59999999984321110                                   001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      +.+|+..+..+    . +++  +++++.  ...+..+++|||++|++|.+.... ...++...+...+.+  ..+..+|.
T Consensus        52 ~~~e~~~l~~l----~-h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~i~~~l~~lH~  123 (276)
T 2yex_A           52 IKKEICINKML----N-HEN--VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLHG  123 (276)
T ss_dssp             HHHHHHHHHTC----C-CTT--BCCEEEEEEETTEEEEEEECCTTEEGGGGSBT-TTBCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----C-CCC--ceeeeeEEEcCCEEEEEEEecCCCcHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            33344433332    2 233  233332  334567999999999999886532 223455544444333  34788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRT  531 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~-~~~~D~~~l~~~  531 (766)
                      .|++|+|+||.||+++.  ++.++|+|||++..+........    .....++..+++++....+.. +...|++++...
T Consensus       124 ~~i~H~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~i  197 (276)
T 2yex_A          124 IGITHRDIKPENLLLDE--RDNLKISDFGLATVFRYNNRERL----LNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIV  197 (276)
T ss_dssp             TTEECSCCSGGGEEECT--TCCEEECCCTTCEECEETTEECC----BCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHH
T ss_pred             CCeeccCCChHHEEEcc--CCCEEEeeCCCccccCCCcchhc----ccCCccccCccChHHHhcCCCCCCcchHHHHHHH
Confidence            99999999999999985  88999999999987643221110    011234566677776654332 345688888877


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       198 l~~l~  202 (276)
T 2yex_A          198 LTAML  202 (276)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.50  E-value=1e-14  Score=156.87  Aligned_cols=199  Identities=17%  Similarity=0.164  Sum_probs=120.4

Q ss_pred             ccccccceeEEEEEee-----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|++|.||+|+.     ++..||||+....-. ....+..+++.+.                              
T Consensus        43 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~-~~~~e~~~~~~~~------------------------------   91 (345)
T 2v62_A           43 KKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENG-PLFSELKFYQRVA------------------------------   91 (345)
T ss_dssp             EEC------CEEEEEESSSCGGGCCEEEEEEECC-C-HHHHHHHHHHHHC------------------------------
T ss_pred             eeEeecCCeEEEEEEecCCCCccceEEEEeeecCCc-chHHHHHHHHHHh------------------------------
Confidence            6899999999999998     368999999865532 1122222211110                              


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeecc------CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--H
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEY------TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--S  445 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~------st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~  445 (766)
                      .-++..|...+..    +. ++  .+++++...      ....++||||+ |++|.++..... .++...+...+.+  .
T Consensus        92 ~~~~~~e~~~~~~----l~-h~--ni~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~  162 (345)
T 2v62_A           92 KKDCIKKWIERKQ----LD-YL--GIPLFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLD  162 (345)
T ss_dssp             CHHHHHHHHHHHT----CS-CC--CCCCEEEEEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhhcc----cc-cc--CcceeecccccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            0123333333322    22 22  234444321      34579999999 999998754322 4555555544433  3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHH-HHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL-LEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l-~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D  524 (766)
                      .+..+|..|++|+|+||.||+++....+.++|+|||++..+.+...... .........++..++++++..-+..++..|
T Consensus       163 aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  242 (345)
T 2v62_A          163 VLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSD  242 (345)
T ss_dssp             HHHHHHHTTEECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHH
T ss_pred             HHHHHHhCCeeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhh
Confidence            4788999999999999999999862223999999999988765321100 000001234677888899888776777889


Q ss_pred             HHHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFLN  537 (766)
Q Consensus       525 ~~~l~~~i~~~l~  537 (766)
                      ++++...+.+++.
T Consensus       243 i~slG~il~ell~  255 (345)
T 2v62_A          243 VEILGYCMLRWLC  255 (345)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999987776653

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.50  E-value=1.1e-13  Score=150.76  Aligned_cols=182  Identities=16%  Similarity=0.179  Sum_probs=112.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                  ...      -.
T Consensus        31 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~------~~   70 (371)
T 2xrw_A           31 KPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQ----------------------------------THA------KR   70 (371)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSH----------------------------------HHH------HH
T ss_pred             eeeEecCCEEEEEEEECCCCceEEEEEeccccCCh----------------------------------HHH------HH
Confidence            6899999999999998  59999999885432111                                  000      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC-----CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT-----TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s-----t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                      +.+|+..+..+    .+..-+.+-.++....     ...++||||++| .+.+...   ..++...+...+.+  ..+..
T Consensus        71 ~~~E~~~l~~l----~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~---~~~~~~~~~~i~~qi~~al~~  142 (371)
T 2xrw_A           71 AYRELVLMKCV----NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDA-NLCQVIQ---MELDHERMSYLLYQMLCGIKH  142 (371)
T ss_dssp             HHHHHHHHHHC----CCTTBCCEEEEECSCCSTTTCCEEEEEEECCSE-EHHHHHH---SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCccceEEeeccccccccccceEEEEEcCCC-CHHHHHh---hccCHHHHHHHHHHHHHHHHH
Confidence            33444444433    2222233333332211     256999999997 4544332   23555544443333  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|+|+||+||+++.  ++.++|+|||++...+.....       ....++..++++++..-+..++..|++++.
T Consensus       143 lH~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  213 (371)
T 2xrw_A          143 LHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMM-------TPYVVTRYYRAPEVILGMGYKENVDIWSVG  213 (371)
T ss_dssp             HHHTTCCCSCCCGGGEEECT--TSCEEECCCCC-----------------------CTTCCHHHHTTCCCCTTHHHHHHH
T ss_pred             HHHCCeecccCCHHHEEEcC--CCCEEEEEeeccccccccccc-------CCceecCCccCHHHhcCCCCCchHhHHHHH
Confidence            99999999999999999985  889999999999877543211       112345667888888766667788999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       214 ~il~el~~  221 (371)
T 2xrw_A          214 CIMGEMIK  221 (371)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88776653

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.50  E-value=1.7e-14  Score=149.85  Aligned_cols=187  Identities=19%  Similarity=0.182  Sum_probs=114.8

Q ss_pred             ccccccceeEEEEEee---cC--eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL---KG--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G--~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|++|+||+|++   +|  ..||||+.++.....                                 .+      .
T Consensus        24 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~------~   64 (291)
T 1u46_A           24 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQ---------------------------------PE------A   64 (291)
T ss_dssp             EECC----CCCEEEEEECTTSCEEEEEEEC-----------------------------------------CH------H
T ss_pred             eeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCC---------------------------------HH------H
Confidence            6899999999999986   23  369999875532111                                 00      0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      .-++.+|++.+.++    . +++  +++++.. .....+++|||++|++|.+........++...+...+.+  ..+..+
T Consensus        65 ~~~~~~e~~~l~~l----~-h~~--i~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~l  137 (291)
T 1u46_A           65 MDDFIREVNAMHSL----D-HRN--LIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYL  137 (291)
T ss_dssp             HHHHHHHHHHHHHC----C-CTT--BCCEEEEECSSSCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----C-CCC--cccEEEEEccCCceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHH
Confidence            11345566555554    2 232  2223321 234579999999999999876543334555555444433  347889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|+||.||+++.  ++.++|+|||++..+.........   ......+..+++++....+..++..|++++..
T Consensus       138 H~~~i~H~dikp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  212 (291)
T 1u46_A          138 ESKRFIHRDLAARNLLLAT--RDLVKIGDFGLMRALPQNDDHYVM---QEHRKVPFAWCAPESLKTRTFSHASDTWMFGV  212 (291)
T ss_dssp             HHTTEECSCCCGGGEEEEE--TTEEEECCCTTCEECCC-CCEEEC--------CCGGGCCHHHHHHCEEEHHHHHHHHHH
T ss_pred             HhCCcccCCCchheEEEcC--CCCEEEccccccccccccccchhh---hccCCCCceeeCchhhcCCCCCchhhHHHHHH
Confidence            9999999999999999986  889999999999887543211000   01112344577777777666666789999987


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       213 il~~l~  218 (291)
T 1u46_A          213 TLWEMF  218 (291)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.50  E-value=2.4e-14  Score=150.64  Aligned_cols=183  Identities=15%  Similarity=0.126  Sum_probs=120.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.+......                                          +-.
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~------------------------------------------~~~   52 (304)
T 2jam_A           15 EVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFR------------------------------------------DSS   52 (304)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEECC------------------------------------------------H
T ss_pred             eeccCCCCceEEEEEECCCCCEEEEEEEecccccc------------------------------------------hHH
Confidence            6899999999999998  59999999985421100                                          012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|...+..+    . ++++.-..-+.......+++|||++|++|.+.... ...++...+...+.+  ..+..+|..|
T Consensus        53 ~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~  126 (304)
T 2jam_A           53 LENEIAVLKKI----K-HENIVTLEDIYESTTHYYLVMQLVSGGELFDRILE-RGVYTEKDASLVIQQVLSAVKYLHENG  126 (304)
T ss_dssp             HHHHHHHHHHC----C-CTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCCeeehhhhcccCCEEEEEEEcCCCccHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33455544443    2 33332222223445667999999999999886532 223455544443333  3478899999


Q ss_pred             ccccCCCCCcEEEee-cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~-~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|++|.||++.. ..++.++|+|||++.........        ...+++.+++++....+..++..|++++...+.
T Consensus       127 i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  198 (304)
T 2jam_A          127 IVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMS--------TACGTPGYVAPEVLAQKPYSKAVDCWSIGVITY  198 (304)
T ss_dssp             CCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTTH--------HHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCccc--------cccCCCCccChHHhccCCCCchhhHHHHHHHHH
Confidence            999999999999932 13688999999998766543211        123456667777665555556678888887766


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       199 ~l~~  202 (304)
T 2jam_A          199 ILLC  202 (304)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.50  E-value=5.2e-14  Score=158.80  Aligned_cols=182  Identities=18%  Similarity=0.172  Sum_probs=115.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+........                                  ....      .
T Consensus        68 ~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~----------------------------------~~~~------~  107 (464)
T 3ttj_A           68 KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQ----------------------------------THAK------R  107 (464)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSH----------------------------------HHHH------H
T ss_pred             EEeecCCCeEEEEEEECCCCCEEEEEEECccccCh----------------------------------HHHH------H
Confidence            7899999999999998  69999999885432111                                  0011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc-----CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY-----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-----st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                      +.+|.+.+..+    .+..-+.+-.++..-     ....+|||||++|..+..+.    ..++...+...+.+  ..++.
T Consensus       108 ~~~E~~~l~~l----~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~~~l~~~~~----~~l~~~~~~~~~~qil~aL~~  179 (464)
T 3ttj_A          108 AYRELVLMKCV----NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYLLYQMLCGIKH  179 (464)
T ss_dssp             HHHHHHHHHHC----CCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHHT----SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----CCCCCCcEEEEEccCCccccCCeEEEEEeCCCCCHHHHHh----hcCCHHHHHHHHHHHHHHHHH
Confidence            33444444433    232223333333211     13459999999986333321    23454444333332  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|+|+||+||+++.  ++.++|+|||++.........       .-..+++.++++++..-.-.+...|++++.
T Consensus       180 lH~~~iiHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG  250 (464)
T 3ttj_A          180 LHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMM-------TPYVVTRYYRAPEVILGMGYKENVDIWSVG  250 (464)
T ss_dssp             HHHTTCCCCCCCGGGEEECT--TSCEEECCCCCC-----CCCC-----------CCCTTCCHHHHTTCCCCTTHHHHHHH
T ss_pred             HHHCCcccCCCChHhEEEeC--CCCEEEEEEEeeeecCCCccc-------CCCcccccccCHHHHcCCCCCHHHHHHHHH
Confidence            99999999999999999985  889999999999876543210       112356778888888766667788999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       251 ~il~ell~  258 (464)
T 3ttj_A          251 CIMGEMVR  258 (464)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88877663

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.50  E-value=3.5e-14  Score=158.79  Aligned_cols=190  Identities=16%  Similarity=0.111  Sum_probs=111.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+.........                                        ..-.
T Consensus        59 ~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~----------------------------------------~~~~   98 (458)
T 3rp9_A           59 HLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLI----------------------------------------DCKR   98 (458)
T ss_dssp             CC-------CEEEEEECC--CEEEEEEECSTTSSHH----------------------------------------HHHH
T ss_pred             eEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHH----------------------------------------HHHH
Confidence            6899999999999998  599999998743321110                                        0112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee----ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~----e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      +.+|++.+.++    .+..-+.+-.++.    +.....++||||++| .|.++... ...++...+...+.+  ..++.+
T Consensus        99 ~~~E~~~l~~l----~h~niv~l~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~-~~~l~~~~~~~~~~qi~~aL~~L  172 (458)
T 3rp9_A           99 ILREIAILNRL----NHDHVVKVLDIVIPKDVEKFDELYVVLEIADS-DFKKLFRT-PVYLTELHIKTLLYNLLVGVKYV  172 (458)
T ss_dssp             HHHHHHHHHHC----CCTTBCCEEEECCCSCTTTCCCEEEEECCCSE-EHHHHHHS-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----CCCCCCceEEEEecCCcccCceEEEEEecccc-chhhhccc-CCCCCHHHHHHHHHHHHHHHHHH
Confidence            44555555544    2222222222221    112457999999865 56665422 223455444444333  348889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHH----------------------HHHHHHHHHhhcCHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIRE----------------------GLLEAFYGIYEKDADK  508 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~----------------------~l~~l~~a~~~~D~~~  508 (766)
                      |..|++|+|+||+|||++.  ++.++|+|||++..++.....                      ..... ..-..++..+
T Consensus       173 H~~~iiHrDlKp~NILl~~--~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gt~~Y  249 (458)
T 3rp9_A          173 HSAGILHRDLKPANCLVNQ--DCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQ-LTGHVVTRWY  249 (458)
T ss_dssp             HHTTCBCCCCCGGGEEECT--TCCEEECCCTTCBCTTSCTTCCCCCC----------------------------CCCTT
T ss_pred             HhCCcCCCCCChhhEEECC--CCCEeecccccchhccCccccccccccCcccccccccccccccccccc-ccCCcccccc
Confidence            9999999999999999986  889999999999877532100                      00000 1112346778


Q ss_pred             HHHHHHH-cCCCCCCCCHHHHHHHHHHHHH
Q 004234          509 VLQAMVQ-MGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       509 v~~~l~~-lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      ++++++. .+..+...|++++...+.+++.
T Consensus       250 ~aPE~~~~~~~~~~~~DiwSlG~il~ellt  279 (458)
T 3rp9_A          250 RAPELILLQENYTEAIDVWSIGCIFAELLN  279 (458)
T ss_dssp             CCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred             cChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence            8898763 3446677899999998888774

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.50  E-value=2.2e-14  Score=152.70  Aligned_cols=184  Identities=15%  Similarity=0.137  Sum_probs=119.4

Q ss_pred             ccccccceeEEEEEee--cCeeE--EEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEV--VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~V--AVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      +.||.|++|.||+|+.  +|+.+  |||+.+......                                         ..
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~-----------------------------------------~~   69 (327)
T 1fvr_A           31 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD-----------------------------------------DH   69 (327)
T ss_dssp             EEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-----------------------------------------------
T ss_pred             eeeecCCCceEEEEEEccCCcccceeeeeeccccchH-----------------------------------------HH
Confidence            6899999999999998  57654  888774321110                                         00


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCHHHHH
Q 004234          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRLG  439 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~~~la  439 (766)
                      -++.+|.+.+.++    ..++++.-..-+.......++||||++|++|.++.....               ..++...+.
T Consensus        70 ~~~~~E~~~l~~l----~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (327)
T 1fvr_A           70 RDFAGELEVLCKL----GHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL  145 (327)
T ss_dssp             CHHHHHHHHHTTC----CCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHH
T ss_pred             HHHHHHHHHHHhc----cCCCchhhhceeeeeCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHH
Confidence            1234444444332    233433322222334566799999999999998754221               134555554


Q ss_pred             HHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC
Q 004234          440 RYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG  517 (766)
Q Consensus       440 ~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG  517 (766)
                      ..+.+  ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..........       .......+++++....+
T Consensus       146 ~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~--~~~~kL~Dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~  216 (327)
T 1fvr_A          146 HFAADVARGMDYLSQKQFIHRDLAARNILVGE--NYVAKIADFGLSRGQEVYVKKT-------MGRLPVRWMAIESLNYS  216 (327)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCSGGGEEECG--GGCEEECCTTCEESSCEECCC-----------CCTTTCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhCCccCCCCccceEEEcC--CCeEEEcccCcCcccccccccc-------CCCCCccccChhhhccc
Confidence            44433  3478899999999999999999986  7899999999998654332211       11234556777777666


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q 004234          518 VLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       518 ~~~~~~D~~~l~~~i~~~l  536 (766)
                      ..++..|++++...+.+++
T Consensus       217 ~~~~~~Di~slG~il~ell  235 (327)
T 1fvr_A          217 VYTTNSDVWSYGVLLWEIV  235 (327)
T ss_dssp             EECHHHHHHHHHHHHHHHH
T ss_pred             cCCchhcchHHHHHHHHHH
Confidence            6677789999988776654

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.50  E-value=8.4e-14  Score=147.20  Aligned_cols=189  Identities=12%  Similarity=0.054  Sum_probs=108.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+..+.-...                                          .-.
T Consensus        34 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~------------------------------------------~~~   71 (337)
T 3ll6_A           34 RVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEK------------------------------------------NRA   71 (337)
T ss_dssp             EEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHH------------------------------------------HHH
T ss_pred             EEEccCCceEEEEEEECCCCcEEEEEEecCCchHH------------------------------------------HHH
Confidence            6899999999999998  69999999874331110                                          112


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeee-------ccCCCeEEEEeecCCCChhhhhhh-h-hcCCCHHHHHHHHHH--
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFW-------EYTTPQILTMEYVPGIKINRIQSL-D-ELGVDRKRLGRYAVE--  444 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~-------e~st~~vLVMEyieG~~L~d~~~l-~-~~g~d~~~la~~lv~--  444 (766)
                      +.+|...+.++.    +++++ .+-.++.       ......+++|||++| +|.++... . ...++...+...+.+  
T Consensus        72 ~~~e~~~l~~l~----~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~g-~L~~~l~~~~~~~~~~~~~~~~i~~qi~  146 (337)
T 3ll6_A           72 IIQEVCFMKKLS----GHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKG-QLVEFLKKMESRGPLSCDTVLKIFYQTC  146 (337)
T ss_dssp             HHHHHHHHHHHT----TSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCSE-EHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc----cCCChhhccccccccccccccCCceEEEEEEecCC-CHHHHHHHhhccCCCCHHHHHHHHHHHH
Confidence            344555555543    22332 2212221       112336999999986 56654322 2 223555555444433  


Q ss_pred             HHHHHHHhCC--ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHH------HHHhhcCHHHHHHHHHH-
Q 004234          445 SYLEQILSHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAF------YGIYEKDADKVLQAMVQ-  515 (766)
Q Consensus       445 ~~l~qI~~~G--ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~------~a~~~~D~~~v~~~l~~-  515 (766)
                      ..+..+|..|  ++|+|+||.||+++.  ++.++|+|||++..++..........-      .....+++.++++++.. 
T Consensus       147 ~~l~~LH~~~~~ivH~Dikp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  224 (337)
T 3ll6_A          147 RAVQHMHRQKPPIIHRDLKVENLLLSN--QGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDL  224 (337)
T ss_dssp             HHHHHHHTSSSCCBCCCCCGGGCEECT--TSCEEBCCCTTCBCCSSCC-------------------------------C
T ss_pred             HHHHHHHhCCCCEEEccCCcccEEECC--CCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhc
Confidence            3488899999  999999999999985  889999999999887654322111000      01123577788999884 


Q ss_pred             --cCCCCCCCCHHHHHHHHHHHH
Q 004234          516 --MGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       516 --lG~~~~~~D~~~l~~~i~~~l  536 (766)
                        -+..++..|++++...+.+++
T Consensus       225 ~~~~~~~~~~Dv~slG~il~el~  247 (337)
T 3ll6_A          225 YSNFPIGEKQDIWALGCILYLLC  247 (337)
T ss_dssp             CTTSCSSHHHHHHHHHHHHHHHH
T ss_pred             cccCCCChHHhHHHHHHHHHHHH
Confidence              333455679999987776654

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.50  E-value=3.9e-14  Score=148.01  Aligned_cols=185  Identities=13%  Similarity=0.089  Sum_probs=119.7

Q ss_pred             ccccccceeEEEEEee----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      +.||+|++|.||+|.+    .|+.||||+.++.....                                  ...      
T Consensus        23 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~------   62 (291)
T 1xbb_A           23 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDP----------------------------------ALK------   62 (291)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----C----------------------------------HHH------
T ss_pred             CccccccCeeeEeeeecCCCceeeEEEEeecccccCH----------------------------------HHH------
Confidence            4899999999999965    37899999985432110                                  001      


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          375 IDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      -.+.+|++.+..+    .+ +++ .+-.++  .....+++|||++|++|.++... ...++...+...+.+  ..+..+|
T Consensus        63 ~~~~~e~~~l~~l----~h-~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~LH  134 (291)
T 1xbb_A           63 DELLAEANVMQQL----DN-PYIVRMIGIC--EAESWMLVMEMAELGPLNKYLQQ-NRHVKDKNIIELVHQVSMGMKYLE  134 (291)
T ss_dssp             HHHHHHHHHHHTC----CC-TTBCCEEEEE--ESSSEEEEEECCTTEEHHHHHHH-CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC----CC-CCEEEEEEEE--CCCCcEEEEEeCCCCCHHHHHHh-CcCCCHHHHHHHHHHHHHHHHHHH
Confidence            1244455544443    22 322 222222  24567999999999999987542 223555554444433  3478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|+|+||.||+++.  ++.++|+|||++..+.........   .........+++++....+..++..|++++...
T Consensus       135 ~~~i~H~dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  209 (291)
T 1xbb_A          135 ESNFVHRDLAARNVLLVT--QHYAKISDFGLSKALRADENYYKA---QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVL  209 (291)
T ss_dssp             HTTEECSCCSGGGEEEEE--TTEEEECCCTTCEECCTTCSEEEC-------CCCGGGCCHHHHHHCEEEHHHHHHHHHHH
T ss_pred             hCCeEcCCCCcceEEEeC--CCcEEEccCCcceeeccCCCcccc---cccCCCCceeeChHHhccCCCChhhhHHHHHHH
Confidence            999999999999999986  889999999999887543211000   001123456777777776666667899999877


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       210 l~~l~  214 (291)
T 1xbb_A          210 MWEAF  214 (291)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.50  E-value=1.9e-14  Score=169.65  Aligned_cols=173  Identities=23%  Similarity=0.206  Sum_probs=115.3

Q ss_pred             ccccccceeEEEEEee---cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL---KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      ..||.|++|.||+|++   +|+.||||+..+.....                                   ...      
T Consensus        86 ~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~------  124 (681)
T 2pzi_A           86 GCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAE-----------------------------------AQA------  124 (681)
T ss_dssp             EEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHH-----------------------------------HHH------
T ss_pred             EEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHH-----------------------------------HHH------
Confidence            6899999999999998   48999999875431110                                   011      


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeee--ccCCC-----eEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HH
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTP-----QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SY  446 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~-----~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~  446 (766)
                      .+.+|++.+.++    . +++  |++++.  .....     .+|||||++|++|.+....   .++...+...+.+  ..
T Consensus       125 ~~~~E~~~l~~l----~-hp~--iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~a  194 (681)
T 2pzi_A          125 MAMAERQFLAEV----V-HPS--IVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPA  194 (681)
T ss_dssp             HHHHHHGGGGGC----C-CTT--BCCEEEEEEEECTTSCEEEEEEEECCCCEECC----C---CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc----C-CCC--cCeEeeeEeecCCCCCceeEEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHH
Confidence            233444433332    2 233  333332  11222     5999999999999886432   4555555544433  34


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004234          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (766)
Q Consensus       447 l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~  526 (766)
                      +..+|..|++|+|+||.||+++.   +.++|+|||++..++..          ....+++.++++++...+. +...|++
T Consensus       195 L~~lH~~giiHrDlkp~NIll~~---~~~kl~DFG~a~~~~~~----------~~~~gt~~y~aPE~~~~~~-~~~sDi~  260 (681)
T 2pzi_A          195 LSYLHSIGLVYNDLKPENIMLTE---EQLKLIDLGAVSRINSF----------GYLYGTPGFQAPEIVRTGP-TVATDIY  260 (681)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECS---SCEEECCCTTCEETTCC----------SCCCCCTTTSCTTHHHHCS-CHHHHHH
T ss_pred             HHHHHHCCCeecccChHHeEEeC---CcEEEEecccchhcccC----------CccCCCccccCHHHHcCCC-CCceehh
Confidence            88899999999999999999974   58999999999887654          1234667777887776654 5567888


Q ss_pred             HHHHHHHHHH
Q 004234          527 AVRRTAQFFL  536 (766)
Q Consensus       527 ~l~~~i~~~l  536 (766)
                      ++...+.+++
T Consensus       261 slG~~l~~l~  270 (681)
T 2pzi_A          261 TVGRTLAALT  270 (681)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence            8887776665

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.49  E-value=3e-14  Score=152.28  Aligned_cols=192  Identities=14%  Similarity=0.081  Sum_probs=117.4

Q ss_pred             hhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          293 FERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       293 F~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      +..|.. +.||+|++|.||+|+.  +|+.||||+.+......                                  +.. 
T Consensus        33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~-   77 (329)
T 3gbz_A           33 IDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEE----------------------------------GVP-   77 (329)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC-----------------------------------------
T ss_pred             hhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEccccccc----------------------------------ccc-
Confidence            334443 7899999999999987  69999999985432111                                  000 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHH
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l  447 (766)
                           -.+.+|++.+.++    . +++|.-..-+.......+|||||++| +|.++... ...++...+...+.+  ..+
T Consensus        78 -----~~~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~-~~~~~~~~~~~i~~ql~~~l  145 (329)
T 3gbz_A           78 -----GTAIREVSLLKEL----Q-HRNIIELKSVIHHNHRLHLIFEYAEN-DLKKYMDK-NPDVSMRVIKSFLYQLINGV  145 (329)
T ss_dssp             -------CHHHHHHGGGC----C-CTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHH-CTTCCHHHHHHHHHHHHHHH
T ss_pred             -----hhHHHHHHHHHHc----C-CCCcceEEEEEecCCEEEEEEecCCC-CHHHHHhh-cCCCCHHHHHHHHHHHHHHH
Confidence                 0123344433333    2 23332222222345677999999997 77775432 223455444443333  347


Q ss_pred             HHHHhCCccccCCCCCcEEEeec---CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCC
Q 004234          448 EQILSHGFFHADPHPGNIAVDDV---NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTG  523 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~---~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~  523 (766)
                      ..+|..|++|+|+||+||+++..   .++.++|+|||++..++......      ....++..++++++..-+ ..+...
T Consensus       146 ~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~  219 (329)
T 3gbz_A          146 NFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQF------THEIITLWYRPPEILLGSRHYSTSV  219 (329)
T ss_dssp             HHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------------CCTTCCHHHHTTCCCCCTHH
T ss_pred             HHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCccccc------CCCcCCccccCHHHhcCCCCCCcHH
Confidence            88999999999999999999631   24569999999998775432221      111236667788877543 356778


Q ss_pred             CHHHHHHHHHHHHH
Q 004234          524 DTTAVRRTAQFFLN  537 (766)
Q Consensus       524 D~~~l~~~i~~~l~  537 (766)
                      |++++...+.+++.
T Consensus       220 DiwslG~il~ell~  233 (329)
T 3gbz_A          220 DIWSIACIWAEMLM  233 (329)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999987766653

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.49  E-value=3.3e-14  Score=153.22  Aligned_cols=186  Identities=12%  Similarity=0.068  Sum_probs=120.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+.+...                                     ...      
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-------------------------------------~~~------   61 (373)
T 1q8y_A           25 RKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVY-------------------------------------TEA------   61 (373)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSCHHH-------------------------------------HHH------
T ss_pred             EeeeecCCeEEEEEEecCCCcEEEEEEecCCccc-------------------------------------hhh------
Confidence            6899999999999998  6999999998543110                                     011      


Q ss_pred             HHHHHHHHHHHHHhc------CCCCc-cccceeeecc---CCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHH-
Q 004234          377 YTQEAANAELFASNF------KDMDY-VKVPTIFWEY---TTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVE-  444 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f------~~~~~-V~vP~v~~e~---st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~lv~-  444 (766)
                      +.+|...+.++.+.-      ..+++ +.+-..+...   ....+++|||+ |++|.++... ...+++...+...+.+ 
T Consensus        62 ~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi  140 (373)
T 1q8y_A           62 AEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQL  140 (373)
T ss_dssp             HHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHH
Confidence            122333333332110      00111 1222222211   12569999999 8888886532 2234555555444433 


Q ss_pred             -HHHHHHHhC-CccccCCCCCcEEEeec----CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004234          445 -SYLEQILSH-GFFHADPHPGNIAVDDV----NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  518 (766)
Q Consensus       445 -~~l~qI~~~-GffHaDpHPGNILV~~~----~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~  518 (766)
                       ..+..+|.. |++|+|+||+||+++..    ..+.++|+|||++..++.....         ..+++.++++++..-+.
T Consensus       141 ~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~---------~~~t~~y~aPE~~~~~~  211 (373)
T 1q8y_A          141 LLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTN---------SIQTREYRSPEVLLGAP  211 (373)
T ss_dssp             HHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCS---------CCSCGGGCCHHHHHTCC
T ss_pred             HHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCCCCCC---------CCCCccccCcHHHhCCC
Confidence             347889998 99999999999999641    1347999999999887654221         24577888999888777


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 004234          519 LVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       519 ~~~~~D~~~l~~~i~~~l~  537 (766)
                      .++..|++++...+.+++.
T Consensus       212 ~~~~~Di~slG~il~el~~  230 (373)
T 1q8y_A          212 WGCGADIWSTACLIFELIT  230 (373)
T ss_dssp             CCTHHHHHHHHHHHHHHHH
T ss_pred             CCchHhHHHHHHHHHHHHh
Confidence            7778899999988777664

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.49  E-value=7.5e-14  Score=150.43  Aligned_cols=194  Identities=15%  Similarity=0.157  Sum_probs=116.9

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|++|.||+|+. +|+.||||+.++.....                        ...+... -....      -.+
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~------------------------~~~~~~~-~~~~~------~~~   76 (362)
T 3pg1_A           28 RFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDG------------------------RTVNILS-DSFLC------KRV   76 (362)
T ss_dssp             EEEEEETTEEEEEEECTTSCEEEEEEECEECCTT------------------------SCEEGGG-SHHHH------HHH
T ss_pred             EEeccCCCEEEEEEECCCCCeEEEEeccccCCcc------------------------chhhhhh-hhhHH------HHH
Confidence            6899999999999998 79999999885433221                        0000000 00111      134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccC----CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYT----TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s----t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      .+|++.+.++.    +..-+.+-.++....    ...++||||++| ++.+........++...+...+.+  ..+..+|
T Consensus        77 ~~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH  151 (362)
T 3pg1_A           77 LREIRLLNHFH----HPNILGLRDIFVHFEEPAMHKLYLVTELMRT-DLAQVIHDQRIVISPQHIQYFMYHILLGLHVLH  151 (362)
T ss_dssp             HHHHHHHHHCC----CTTBCCCSEEEEECCTTTCCEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC----CcCccceeeeEEeccCCCcceEEEEEccCCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence            55665555542    322233334443222    246999999997 555543323334555555444433  3478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRR  530 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~  530 (766)
                      ..|++|+|+||.||+++.  ++.++|+|||++..........       ...++..++++++..- +..++..|++++..
T Consensus       152 ~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~-------~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~  222 (362)
T 3pg1_A          152 EAGVVHRDLHPGNILLAD--NNDITICDFNLAREDTADANKT-------HYVTHRWYRAPELVMQFKGFTKLVDMWSAGC  222 (362)
T ss_dssp             HTTCCCCCCCGGGEEECT--TCCEEECCTTC----------------------CGGGCCHHHHTTCTTCCTHHHHHHHHH
T ss_pred             HCcCEecCCChHHEEEcC--CCCEEEEecCcccccccccccc-------eecccceecCcHHhcCCCCCCcHhHHHhHHH
Confidence            999999999999999985  8899999999998654432211       1234566778887654 45667789999998


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       223 il~~l~~  229 (362)
T 3pg1_A          223 VMAEMFN  229 (362)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7776653

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.49  E-value=1.3e-13  Score=145.45  Aligned_cols=186  Identities=16%  Similarity=0.175  Sum_probs=116.9

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|++|.||+|+. +|+.||||+.+......                                  +      ..-.+
T Consensus        34 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~----------------------------------~------~~~~~   73 (313)
T 3cek_A           34 KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN----------------------------------Q------TLDSY   73 (313)
T ss_dssp             EEEECCSSEEEEEEECTTCCEEEEEEEECSSCCH----------------------------------H------HHHHH
T ss_pred             EEecCCCCEEEEEEEcCCCcEEEEEEeccccccc----------------------------------c------chHHH
Confidence            6899999999999999 79999999985432111                                  0      01134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      .+|++.+.++.+.   .+++.-..-+.......+++|| +.|++|.++... ...++...+...+.+  ..+..+|..|+
T Consensus        74 ~~E~~~l~~l~~~---~~~iv~~~~~~~~~~~~~lv~e-~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~i  148 (313)
T 3cek_A           74 RNEIAYLNKLQQH---SDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGI  148 (313)
T ss_dssp             HHHHHHHHHHGGG---CTTBCCEEEEEECSSEEEEEEC-CCSEEHHHHHHH-CSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcccc---CCceEEEEEEeecCCEEEEEEe-cCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            5566666666531   2222222222233456799999 567788886542 223454444333322  34788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----------CCCCCCCC
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----------GVLVPTGD  524 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-----------G~~~~~~D  524 (766)
                      +|+|+||+||+++   ++.++|+|||++..+.........    ....+++.++++++...           +..+...|
T Consensus       149 vH~dlkp~NIl~~---~~~~kL~Dfg~~~~~~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~D  221 (313)
T 3cek_A          149 VHSDLKPANFLIV---DGMLKLIDFGIANQMQPDTTSVVK----DSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSD  221 (313)
T ss_dssp             CCCCCCGGGEEEE---TTEEEECCCSSSCC------------------CCGGGCCHHHHTTCC----------CCCHHHH
T ss_pred             eecCCCcccEEEE---CCeEEEeeccccccccCccccccc----cCCCCCCCcCCHHHHhhcccccccccccccCCchHH
Confidence            9999999999996   689999999999987654332211    12246778888888754           24455678


Q ss_pred             HHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFL  536 (766)
Q Consensus       525 ~~~l~~~i~~~l  536 (766)
                      ++++...+.+++
T Consensus       222 i~slG~il~el~  233 (313)
T 3cek_A          222 VWSLGCILYYMT  233 (313)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888887766654

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.49  E-value=7.2e-14  Score=151.42  Aligned_cols=186  Identities=15%  Similarity=0.116  Sum_probs=122.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.++.....                                   .      .-.
T Consensus        33 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~------~~~   71 (364)
T 3qyz_A           33 SYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQT-----------------------------------Y------CQR   71 (364)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHH-----------------------------------H------HHH
T ss_pred             EEeecCCCeEEEEEEECCCCeEEEEEEeccccCcH-----------------------------------H------HHH
Confidence            6899999999999998  69999999985432111                                   0      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc----CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~----st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      +.+|++.+.++.    +..-+.+-.++...    ....++||||++| +|.++..  ...++...+...+.+  ..+..+
T Consensus        72 ~~~E~~~l~~l~----h~niv~~~~~~~~~~~~~~~~~~iv~e~~~~-~L~~~l~--~~~~~~~~~~~i~~qi~~aL~~L  144 (364)
T 3qyz_A           72 TLREIKILLRFR----HENIIGINDIIRAPTIEQMKDVYIVQDLMET-DLYKLLK--TQHLSNDHICYFLYQILRGLKYI  144 (364)
T ss_dssp             HHHHHHHHHHCC----CTTBCCCCEEECCSSTTTCCCEEEEEECCSE-EHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC----CCCCccceeEEecCCccccceEEEEEcccCc-CHHHHHH--hCCCCHHHHHHHHHHHHHHHHHH
Confidence            345555555542    22222333333211    1357999999997 6666543  334555555444433  347889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVR  529 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~  529 (766)
                      |..|++|+|+||+||+++.  ++.++|+|||++...+......-   ...-..+++.++++++...+ ..++..|++++.
T Consensus       145 H~~~ivH~Dikp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG  219 (364)
T 3qyz_A          145 HSANVLHRDLKPSNLLLNT--TCDLKICDFGLARVADPDHDHTG---FLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVG  219 (364)
T ss_dssp             HHTTEECCCCCGGGEEECT--TCCEEECCCTTCEECCGGGCBCC---TTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHH
T ss_pred             HHCCeecCCCChHhEEECC--CCCEEEEeCcceEecCCCCCccc---cccccccccCCCCCHHhcCCCCCCcchhHHHHH
Confidence            9999999999999999985  88999999999988765422100   00112456778888876543 356777999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       220 ~il~ell~  227 (364)
T 3qyz_A          220 CILAEMLS  227 (364)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88776653

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.49  E-value=6.4e-14  Score=153.06  Aligned_cols=181  Identities=18%  Similarity=0.173  Sum_probs=105.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||+|++|.||+|..  +|+.||||+........                                  ..      .-.
T Consensus        35 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~----------------------------------~~------~~~   74 (367)
T 2fst_X           35 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSI----------------------------------IH------AKR   74 (367)
T ss_dssp             EECC----CCEEEEEETTTTEEEEEEECSSTTSSH----------------------------------HH------HHH
T ss_pred             eEEeecCCeEEEEEEECCCCCEEEEEEeCccccCH----------------------------------HH------HHH
Confidence            6899999999999997  69999999875432111                                  00      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec-----cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-----~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                      +.+|.+.+..+    .+..-+.+-.++..     .....+++|||+ |.+|.++...  ..++...+...+.+  ..+..
T Consensus        75 ~~~E~~~l~~l----~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~i~~qi~~aL~~  147 (367)
T 2fst_X           75 TYRELRLLKHM----KHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKC--QKLTDDHVQFLIYQILRGLKY  147 (367)
T ss_dssp             HHHHHHHHHHC----CCTTBCCCSEEECSCSSGGGCCCCEEEEECC-CEECC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----CCCCCCcEEEEEecCCccccCCeEEEEeccc-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHH
Confidence            33444444443    22222333333321     124569999999 6788876432  33555444443333  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAV  528 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l  528 (766)
                      +|..|++|+|+||+||+++.  ++.++|+|||++.........         ..++..++++++... +..+...|++++
T Consensus       148 LH~~givH~Dlkp~NIll~~--~~~~kL~DFG~a~~~~~~~~~---------~~~t~~y~aPE~~~~~~~~~~~~Diwsl  216 (367)
T 2fst_X          148 IHSADIIHRDLKPSNLAVNE--DCELKILDFGLARHTADEMTG---------YVATRWYRAPEIMLNWMHYNQTVDIWSV  216 (367)
T ss_dssp             HHHTTCCCCCCCGGGEEECT--TCCEEECC------------------------CCCTTCCHHHHTTCCSCCTTHHHHHH
T ss_pred             HHHCCeeeCCCCHhhEEECC--CCCEEEeeccccccccccCCC---------cCcCcCccChHHHcCCcCCCchhhHHHH
Confidence            99999999999999999985  889999999999876543211         234666778887654 456677899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       217 G~il~ell~  225 (367)
T 2fst_X          217 GCIMAELLT  225 (367)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            988777654

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.49  E-value=1.2e-13  Score=162.60  Aligned_cols=183  Identities=17%  Similarity=0.162  Sum_probs=124.2

Q ss_pred             ccccccceeEEEEEeec-----CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-----G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||.|++|.||+|++.     +..||||+.+......                                   .      
T Consensus       396 ~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~------  434 (656)
T 2j0j_A          396 RCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDS-----------------------------------V------  434 (656)
T ss_dssp             EEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHH-----------------------------------H------
T ss_pred             eEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHH-----------------------------------H------
Confidence            57999999999999982     4679999874322111                                   0      


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQI  450 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI  450 (766)
                      .-.|.+|+..+.++     ++++|  ++++.- ..+..++||||++|++|.++.......++...+...+.  ...+..+
T Consensus       435 ~~~~~~E~~~l~~l-----~HpnI--v~l~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~L  507 (656)
T 2j0j_A          435 REKFLQEALTMRQF-----DHPHI--VKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYL  507 (656)
T ss_dssp             HHHHHHHHHHHHHC-----CCTTB--CCEEEEECSSSCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-----CCCCC--CeEEEEEecCceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            11345566655554     22332  222221 23567999999999999997654444456555544433  3448889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|+||.||+++.  ++.++|+|||++..+........     ......+.+++|++...+..++..|++++..
T Consensus       508 H~~givHrDikp~NILl~~--~~~vkL~DFG~a~~~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~  580 (656)
T 2j0j_A          508 ESKRFVHRDIAARNVLVSS--NDCVKLGDFGLSRYMEDSTYYKA-----SKGKLPIKWMAPESINFRRFTSASDVWMFGV  580 (656)
T ss_dssp             HHTTCCCSCCSGGGEEEEE--TTEEEECCCCCCCSCCC---------------CCGGGCCHHHHHHCCCCHHHHHHHHHH
T ss_pred             HhCCccccccchHhEEEeC--CCCEEEEecCCCeecCCCcceec-----cCCCCCcceeCHHHhcCCCCCchhhHHHHHH
Confidence            9999999999999999986  89999999999998865432111     1123456788898888777777789999987


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       581 il~ell  586 (656)
T 2j0j_A          581 CMWEIL  586 (656)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.49  E-value=1e-13  Score=146.49  Aligned_cols=187  Identities=20%  Similarity=0.186  Sum_probs=122.9

Q ss_pred             ccccccceeEEEEEee---cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL---KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      +.||+|++|.||+|+.   +|+.||||+.++.....                       .   ..              .
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~-----------------------~---~~--------------~   56 (326)
T 1blx_A           17 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE-----------------------G---MP--------------L   56 (326)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT-----------------------S---CB--------------C
T ss_pred             eeecccccEEEEEEEecCCCCEEEEEEEeccCcccc-----------------------c---CC--------------c
Confidence            6899999999999997   48999999885432211                       0   00              0


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeee----ccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHH--HHHH
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVE--SYLE  448 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~----e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~lv~--~~l~  448 (766)
                      .+.+|...+..+.. +.+..-+.+-.++.    +.....++||||++| +|.++... ...+++...+...+.+  ..+.
T Consensus        57 ~~~~e~~~l~~l~~-~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~  134 (326)
T 1blx_A           57 STIREVAVLRHLET-FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGVPTETIKDMMFQLLRGLD  134 (326)
T ss_dssp             THHHHHHHHHHHHH-TCCTTBCCEEEEEEEEECSSEEEEEEEEECCSC-BHHHHHHHSCTTCSCHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhhhc-cCCCCeEeeeeeeeecccCCCceEEEEEecCCC-CHHHHHHhcccCCCCHHHHHHHHHHHHHHHH
Confidence            12233333333322 12222222222222    123457999999997 77775432 2223555555444433  3478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      .+|..|++|+|+||+||+++.  ++.++|+|||++..++....       .....++..++++++..-+..++..|++++
T Consensus       135 ~lH~~gi~H~dlkp~Nili~~--~~~~kl~Dfg~~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  205 (326)
T 1blx_A          135 FLHSHRVVHRDLKPQNILVTS--SGQIKLADFGLARIYSFQMA-------LTSVVVTLWYRAPEVLLQSSYATPVDLWSV  205 (326)
T ss_dssp             HHHHTTCCCCCCCGGGEEECT--TCCEEECSCCSCCCCCGGGG-------GCCCCCCCTTCCHHHHTTCCCCTHHHHHHH
T ss_pred             HHHHCCceeccCCHHHeEEcC--CCCEEEecCcccccccCCCC-------ccccccccceeCHHHHhcCCCCcchhHHHH
Confidence            899999999999999999985  88999999999988765431       112345677888888877777777899999


Q ss_pred             HHHHHHHH
Q 004234          529 RRTAQFFL  536 (766)
Q Consensus       529 ~~~i~~~l  536 (766)
                      ...+.+++
T Consensus       206 G~il~~l~  213 (326)
T 1blx_A          206 GCIFAEMF  213 (326)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88776665

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.49  E-value=7.8e-15  Score=158.75  Aligned_cols=184  Identities=15%  Similarity=0.153  Sum_probs=117.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+........                 .                +.      .-.
T Consensus        15 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~-----------------~----------------~~------~~~   55 (336)
T 3h4j_B           15 ETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKK-----------------S----------------DM------HMR   55 (336)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHH-----------------T----------------TC------SHH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEehHHccc-----------------h----------------hH------HHH
Confidence            6899999999999998  69999999874211000                 0                00      012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+..+    . +++|.-..-+....+..++||||++ +.+.+... ....++...+...+.+  ..+..+|..|
T Consensus        56 ~~~E~~~l~~l----~-hpnIv~l~~~~~~~~~~~lv~E~~~-g~l~~~l~-~~~~l~~~~~~~i~~qi~~aL~~LH~~g  128 (336)
T 3h4j_B           56 VEREISYLKLL----R-HPHIIKLYDVITTPTDIVMVIEYAG-GELFDYIV-EKKRMTEDEGRRFFQQIICAIEYCHRHK  128 (336)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEEECSSEEEEEECCCC-EEHHHHHH-HHCSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhC----C-CCCCCeEEEEEEeCCEEEEEEECCC-CcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33444444333    2 3333222222234566799999995 56655432 2233555444443333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~-~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||+||+++.  ++.++|+|||++..+.+....       ....+++.++++++..-... ++..|++++...+.
T Consensus       129 ivH~Dlkp~NIll~~--~~~~kl~DFG~s~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~  199 (336)
T 3h4j_B          129 IVHRDLKPENLLLDD--NLNVKIADFGLSNIMTDGNFL-------KTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLY  199 (336)
T ss_dssp             CCCCCCSTTTEEECT--TCCEEECCSSCTBTTTTSBTT-------CCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHH
T ss_pred             eEecCCchhhEEEcC--CCCEEEEEeccceeccCCccc-------ccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHH
Confidence            999999999999985  889999999999877654211       11235677778877653332 45679999988777


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       200 ~ll~  203 (336)
T 3h4j_B          200 VMLV  203 (336)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6653

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.49  E-value=3.9e-14  Score=159.50  Aligned_cols=186  Identities=16%  Similarity=0.129  Sum_probs=123.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+........                         ..+.              -.
T Consensus        32 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~-------------------------~~~~--------------~~   72 (484)
T 3nyv_A           32 RVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQ-------------------------KTDK--------------ES   72 (484)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCB-------------------------SSCH--------------HH
T ss_pred             eEEecCCCEEEEEEEECCCCCEEEEEEEEhhhccc-------------------------chHH--------------HH
Confidence            6899999999999999  59999999974321110                         0011              12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++     ++++|.-..-+.+.....++||||++|++|.+... ....++...+...+.+  ..+..+|..|
T Consensus        73 ~~~E~~~l~~l-----~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~  146 (484)
T 3nyv_A           73 LLREVQLLKQL-----DHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEII-SRKRFSEVDAARIIRQVLSGITYMHKNK  146 (484)
T ss_dssp             HHHHHHHHTTC-----CCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH-TCSCCBHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC-----CCCCCCcEEEEEEeCCEEEEEEecCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34455444333     23333222222233556799999999999987643 2233455444444333  3478899999


Q ss_pred             ccccCCCCCcEEEee-cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~-~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||.||+++. ..++.++|+|||++..+.......       ...+++.+++|++.. |..++..|++++...+.
T Consensus       147 ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~-------~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~  218 (484)
T 3nyv_A          147 IVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMK-------DKIGTAYYIAPEVLH-GTYDEKCDVWSTGVILY  218 (484)
T ss_dssp             CCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSHH-------HHTTGGGTCCHHHHH-TCCCTHHHHHHHHHHHH
T ss_pred             eeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccccc-------cCCCCccccCceeec-CCCCCcceeHHHHHHHH
Confidence            999999999999953 136789999999998876543211       123567788888875 45677789999998877


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       219 ~ll~  222 (484)
T 3nyv_A          219 ILLS  222 (484)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.49  E-value=6.6e-15  Score=156.91  Aligned_cols=184  Identities=15%  Similarity=0.032  Sum_probs=116.8

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||+|++|.||+|++.|+.||||+.+..-..                                           ...+.
T Consensus        30 ~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~-------------------------------------------~~~~~   66 (322)
T 3soc_A           30 EVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQ-------------------------------------------SWQNE   66 (322)
T ss_dssp             EEEECSTTCEEEEEEETTEEEEEEEECGGGHH-------------------------------------------HHHHH
T ss_pred             heecccCceEEEEEEECCCEEEEEEeecCchH-------------------------------------------HHHHH
Confidence            68999999999999999999999998432110                                           00112


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      .|+..+.+    +.+..-+.+-.++..-.   ...++||||++|++|.++...  ..++...+...+.+  ..+..+|..
T Consensus        67 ~E~~~l~~----l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~qi~~al~~LH~~  140 (322)
T 3soc_A           67 YEVYSLPG----MKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKA--NVVSWNELCHIAETMARGLAYLHED  140 (322)
T ss_dssp             HHHHTSTT----CCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhc----CCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            23332222    22222222222222211   125999999999999997543  33555544444333  347788888


Q ss_pred             ----------CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-----
Q 004234          454 ----------GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-----  518 (766)
Q Consensus       454 ----------GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~-----  518 (766)
                                |++|+|+||.||+++.  ++.++|+|||++..+........    .....+++.++++++..-+.     
T Consensus       141 ~~~l~~~~~~~ivH~Dlkp~Nill~~--~~~~kL~DFg~a~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~  214 (322)
T 3soc_A          141 IPGLKDGHKPAISHRDIKSKNVLLKN--NLTACIADFGLALKFEAGKSAGD----THGQVGTRRYMAPEVLEGAINFQRD  214 (322)
T ss_dssp             EEEETTEEECEEECSCCSGGGEEECT--TCCEEECCCTTCEEECTTSCCCC----CTTCCCCGGGCCHHHHTTCCCCCHH
T ss_pred             ccccccccCCCEEeCCCChHhEEECC--CCeEEEccCCcccccccccCccc----cccCccCccccCHhhcccccccCcC
Confidence                      9999999999999985  88999999999987754321100    01123577788888876422     


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 004234          519 LVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       519 ~~~~~D~~~l~~~i~~~l~  537 (766)
                      .+...|++++...+.+++.
T Consensus       215 ~~~~~DiwslG~il~el~t  233 (322)
T 3soc_A          215 AFLRIDMYAMGLVLWELAS  233 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             CCccchhHHHHHHHHHHHh
Confidence            1223488888877766553

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.49  E-value=2.6e-14  Score=153.78  Aligned_cols=194  Identities=14%  Similarity=0.046  Sum_probs=123.8

Q ss_pred             hccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004234          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (766)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (766)
                      ..|.. +.||+|++|.||+|+.  +|+.||||+.++.....                    .........          
T Consensus        24 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~--------------------~~~~~~~~~----------   73 (335)
T 3dls_A           24 QKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLE--------------------DCWIEDPKL----------   73 (335)
T ss_dssp             HHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCT--------------------TSEEEETTT----------
T ss_pred             cceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhccc--------------------ccccchHHH----------
Confidence            34433 7899999999999997  69999999986542111                    000000000          


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCC-ChhhhhhhhhcCCCHHHHHHHHHH--HHH
Q 004234          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGI-KINRIQSLDELGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       371 l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~-~L~d~~~l~~~g~d~~~la~~lv~--~~l  447 (766)
                          -.+.+|+..+.++    . +++|.-..-+.......++||||+.++ ++.++... ...++...+...+.+  ..+
T Consensus        74 ----~~~~~E~~~l~~l----~-h~~Iv~~~~~~~~~~~~~lv~e~~~~g~~l~~~~~~-~~~l~~~~~~~i~~qi~~~L  143 (335)
T 3dls_A           74 ----GKVTLEIAILSRV----E-HANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDR-HPRLDEPLASYIFRQLVSAV  143 (335)
T ss_dssp             ----EEEEHHHHHHTTC----C-CTTBCCEEEEEECSSEEEEEEECCTTSCBHHHHHHT-CCCCCHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhC----C-CCCEeeEEEEEeeCCEEEEEEEeCCCCccHHHHHHh-cCCCCHHHHHHHHHHHHHHH
Confidence                0223344444333    2 233322222234456678999998655 88876532 223555544444333  347


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHH
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTT  526 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~-~~~~D~~  526 (766)
                      ..+|..|++|+|+||.||+++.  ++.++|+|||++..+......       ....+++.++++++..-... ++..|++
T Consensus       144 ~~LH~~~ivH~Dlkp~NIll~~--~~~~kL~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~Diw  214 (335)
T 3dls_A          144 GYLRLKDIIHRDIKDENIVIAE--DFTIKLIDFGSAAYLERGKLF-------YTFCGTIEYCAPEVLMGNPYRGPELEMW  214 (335)
T ss_dssp             HHHHHTTEECSCCSGGGEEECT--TSCEEECCCTTCEECCTTCCB-------CEECSCGGGCCHHHHTTCCBCSHHHHHH
T ss_pred             HHHHhCCeEEeccCHHHEEEcC--CCcEEEeecccceECCCCCce-------eccCCCccccChhhhcCCCCCCCcccch
Confidence            8899999999999999999985  899999999999887653211       11246778888888765443 5567999


Q ss_pred             HHHHHHHHHH
Q 004234          527 AVRRTAQFFL  536 (766)
Q Consensus       527 ~l~~~i~~~l  536 (766)
                      ++...+.+++
T Consensus       215 slG~il~el~  224 (335)
T 3dls_A          215 SLGVTLYTLV  224 (335)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            9988776665

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.48  E-value=1.1e-13  Score=141.77  Aligned_cols=179  Identities=12%  Similarity=0.079  Sum_probs=119.2

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||+|++|.||+|+++|+.||||+.+......                                  +.      .-.|.
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~avK~~~~~~~~~----------------------------------~~------~~~~~   55 (271)
T 3kmu_A           16 TKLNENHSGELWKGRWQGNDIVVKVLKVRDWST----------------------------------RK------SRDFN   55 (271)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEECCTTCCH----------------------------------HH------HHHHH
T ss_pred             HHhcCCCcceEEEEEECCeeEEEEEecccccCH----------------------------------HH------HHHHH
Confidence            689999999999999999999999985432111                                  00      01234


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeec--cC--CCeEEEEeecCCCChhhhhhhhhc-CCCHHHHHHHHHH--HHHHHHH
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWE--YT--TPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e--~s--t~~vLVMEyieG~~L~d~~~l~~~-g~d~~~la~~lv~--~~l~qI~  451 (766)
                      +|++.+.++    . +++  +.+++.-  ..  ...+++|||++|++|.++...... .++...+...+.+  ..+..+|
T Consensus        56 ~E~~~l~~l----~-h~~--iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH  128 (271)
T 3kmu_A           56 EECPRLRIF----S-HPN--VLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH  128 (271)
T ss_dssp             HHGGGGCCC----S-CTT--EECEEEEECTTTSSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhc----C-CCc--hhheEEEEccCCCCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            444433322    2 233  2333322  22  456999999999999997643222 2555555554433  3478889


Q ss_pred             hCC--ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC---CCCHH
Q 004234          452 SHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP---TGDTT  526 (766)
Q Consensus       452 ~~G--ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~---~~D~~  526 (766)
                      ..|  ++|+|+||.||+++.  ++.+++.|||+........           ..+++.++++++........   ..|++
T Consensus       129 ~~~~~i~H~dikp~Nil~~~--~~~~~l~~~~~~~~~~~~~-----------~~~t~~y~aPE~~~~~~~~~~~~~~Di~  195 (271)
T 3kmu_A          129 TLEPLIPRHALNSRSVMIDE--DMTARISMADVKFSFQSPG-----------RMYAPAWVAPEALQKKPEDTNRRSADMW  195 (271)
T ss_dssp             TSSSCCTTCCCSGGGEEECT--TSCEEEEGGGSCCTTSCTT-----------CBSCGGGSCHHHHHSCGGGSCHHHHHHH
T ss_pred             cCCCceecCCCccceEEEcC--CcceeEEeccceeeecccC-----------ccCCccccChhhhccCCCCCCCchhhHH
Confidence            999  999999999999985  7888888888765543322           13467788888887544333   47999


Q ss_pred             HHHHHHHHHHH
Q 004234          527 AVRRTAQFFLN  537 (766)
Q Consensus       527 ~l~~~i~~~l~  537 (766)
                      ++...+.+++.
T Consensus       196 slG~il~el~~  206 (271)
T 3kmu_A          196 SFAVLLWELVT  206 (271)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99887766653

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.48  E-value=6e-14  Score=159.26  Aligned_cols=194  Identities=14%  Similarity=0.093  Sum_probs=121.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|++|.||+|+.  +|+.||||+........-               +..        +-.....+..+      .
T Consensus        42 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~---------------~~~--------~~~~~~~~~~~------~   92 (504)
T 3q5i_A           42 RKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKG---------------RYS--------DDNKNIEKFHE------E   92 (504)
T ss_dssp             EEEEC--CEEEEEEEETTTCCEEEEEEEEC---------------------------------------CTHH------H
T ss_pred             eEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccc---------------ccc--------ccchhhHHHHH------H
Confidence            6899999999999998  589999999854321110               000        00000011111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++    . +|+|.-..-+.+.....++||||++|++|.+... ....++...+...+.+  ..+..+|..|
T Consensus        93 ~~~E~~~l~~l----~-hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~  166 (504)
T 3q5i_A           93 IYNEISLLKSL----D-HPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQII-NRHKFDECDAANIMKQILSGICYLHKHN  166 (504)
T ss_dssp             HHHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHH-HHSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCCCCeEEEEEEcCCEEEEEEecCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34455544443    2 3433222222234556799999999999987653 2234555554444433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCC---cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGG---RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g---~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ++|+|+||.||+++.  ++   .++|+|||++..++.....       ....+++.+++|++.. +..++..|++++...
T Consensus       167 ivH~Dlkp~Nil~~~--~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~i  236 (504)
T 3q5i_A          167 IVHRDIKPENILLEN--KNSLLNIKIVDFGLSSFFSKDYKL-------RDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVI  236 (504)
T ss_dssp             EECSCCSGGGEEESS--TTCCSSEEECCCTTCEECCTTSCB-------CCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHH
T ss_pred             eEeCCCcHHHEEEec--CCCCccEEEEECCCCEEcCCCCcc-------ccccCCcCCCCHHHhc-cCCCchHHHHHHHHH
Confidence            999999999999985  33   6999999999887654211       1123677888888876 456777899999987


Q ss_pred             HHHHHH
Q 004234          532 AQFFLN  537 (766)
Q Consensus       532 i~~~l~  537 (766)
                      +.+++.
T Consensus       237 l~~ll~  242 (504)
T 3q5i_A          237 MYILLC  242 (504)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            776654

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.48  E-value=3.2e-14  Score=151.49  Aligned_cols=184  Identities=16%  Similarity=0.114  Sum_probs=118.4

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||+|++|.||+|+.+|+.||||+.++...                                             -++.
T Consensus        48 ~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~---------------------------------------------~~~~   82 (342)
T 1b6c_B           48 ESIGKGRFGEVWRGKWRGEEVAVKIFSSREE---------------------------------------------RSWF   82 (342)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEECGGGH---------------------------------------------HHHH
T ss_pred             eeecCCCCcEEEEEEEcCccEEEEEeCchhH---------------------------------------------HHHH
Confidence            6899999999999999999999998743211                                             0122


Q ss_pred             HHHHHHHHHHHhcCCCCcc-ccceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH-
Q 004234          379 QEAANAELFASNFKDMDYV-KVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL-  451 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~-  451 (766)
                      +|+..+....  + .++++ .+-.++..-.   ...+++|||++|++|.++..  ...++...+...+.+  ..+..+| 
T Consensus        83 ~e~~~~~~~~--l-~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~--~~~~~~~~~~~i~~~i~~~l~~lH~  157 (342)
T 1b6c_B           83 REAEIYQTVM--L-RHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN--RYTVTVEGMIKLALSTASGLAHLHM  157 (342)
T ss_dssp             HHHHHHHHSC--C-CCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHH--HCCBCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhh--c-CCCcEEEEEeeecccCCccceeEEEEeecCCCcHHHHHh--ccCccHHHHHHHHHHHHHHHHHHHH
Confidence            3333222211  2 22332 2222222211   26799999999999999753  334555555444433  3478888 


Q ss_pred             -------hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC----
Q 004234          452 -------SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV----  520 (766)
Q Consensus       452 -------~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~----  520 (766)
                             ..|++|+|+||.||+++.  +++++|+|||++..+.......-  .......+++.++++++...+...    
T Consensus       158 ~~~~~~~~~~ivH~Dlkp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~  233 (342)
T 1b6c_B          158 EIVGTQGKPAIAHRDLKSKNILVKK--NGTCCIADLGLAVRHDSATDTID--IAPNHRVGTKRYMAPEVLDDSINMKHFE  233 (342)
T ss_dssp             CBCSTTCBCEEECSCCSGGGEEECT--TSCEEECCCTTCEEEETTTTEEE--ECCCSCCCCGGGCCHHHHTSCCCTTCHH
T ss_pred             HHhhhcccCCeeeCCCCHHHEEECC--CCCEEEEECCCceeccccccccc--cccccCCcCcccCCHhhhcccccccccc
Confidence                   899999999999999985  88999999999987654321100  000112356778888887654222    


Q ss_pred             --CCCCHHHHHHHHHHHH
Q 004234          521 --PTGDTTAVRRTAQFFL  536 (766)
Q Consensus       521 --~~~D~~~l~~~i~~~l  536 (766)
                        +..|++++...+.+++
T Consensus       234 ~~~~~Di~slG~il~el~  251 (342)
T 1b6c_B          234 SFKRADIYAMGLVFWEIA  251 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             cCCcccHHHHHHHHHHHH
Confidence              3468888887766655

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.48  E-value=2.8e-14  Score=161.08  Aligned_cols=192  Identities=16%  Similarity=0.158  Sum_probs=125.3

Q ss_pred             hhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004234          292 VFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (766)
Q Consensus       292 iF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (766)
                      +...+.. +.||+|++|.||+|+.  +|+.||||+..+.....                          .+         
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--------------------------~~---------   64 (486)
T 3mwu_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN--------------------------KD---------   64 (486)
T ss_dssp             HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBC--------------------------SC---------
T ss_pred             hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccc--------------------------hH---------
Confidence            3334443 6899999999999998  59999999874211000                          00         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HH
Q 004234          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SY  446 (766)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~  446 (766)
                           .-.+.+|++.+.++     ++++|.-..-+.+.....++||||++|++|.+.... ...++...+...+.+  ..
T Consensus        65 -----~~~~~~E~~~l~~l-----~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~i~~qi~~a  133 (486)
T 3mwu_A           65 -----TSTILREVELLKKL-----DHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIK-RKRFSEHDAARIIKQVFSG  133 (486)
T ss_dssp             -----HHHHHHHHHHHHHC-----CCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHhC-----CCCCcCeEEEEEEcCCEEEEEEEcCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHH
Confidence                 11234555555544     234332222222345667999999999999875432 234555554444433  34


Q ss_pred             HHHHHhCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004234          447 LEQILSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (766)
Q Consensus       447 l~qI~~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~  525 (766)
                      +..+|..|++|+|+||.||+++.. .++.++|+|||++..+......       ....+++.+++|++.. |..++..|+
T Consensus       134 l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~-~~~~~~~Di  205 (486)
T 3mwu_A          134 ITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKM-------KDRIGTAYYIAPEVLR-GTYDEKCDV  205 (486)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC-----------CCTTGGGGCCGGGGG-SCCCHHHHH
T ss_pred             HHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCcc-------CCCcCCCCCCCHHHhC-CCCCchhhH
Confidence            788999999999999999999631 2568999999999877654321       1123567778888765 445667799


Q ss_pred             HHHHHHHHHHHH
Q 004234          526 TAVRRTAQFFLN  537 (766)
Q Consensus       526 ~~l~~~i~~~l~  537 (766)
                      +++...+.+++.
T Consensus       206 wslG~il~~ll~  217 (486)
T 3mwu_A          206 WSAGVILYILLS  217 (486)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999887776654

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.48  E-value=4.2e-14  Score=160.15  Aligned_cols=185  Identities=15%  Similarity=0.140  Sum_probs=118.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                          ..              .-.
T Consensus        43 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--------------------------~~--------------~~~   82 (494)
T 3lij_A           43 KKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVST--------------------------SS--------------NSK   82 (494)
T ss_dssp             EEEECC---EEEEEEETTTCCEEEEEEEEC-------------------------------CT--------------THH
T ss_pred             eEEecCCCEEEEEEEECCCCcEEEEEEEeccccCc--------------------------hH--------------HHH
Confidence            6899999999999999  58999999985432110                          00              012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+..+     ++++|.-..-+.+.....++||||++|++|.+... ....++...+...+.+  ..+..+|..|
T Consensus        83 ~~~E~~~l~~l-----~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~  156 (494)
T 3lij_A           83 LLEEVAVLKLL-----DHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEII-HRMKFNEVDAAVIIKQVLSGVTYLHKHN  156 (494)
T ss_dssp             HHHHHHHHTTC-----CCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC-----CCCCCCeEEEEEEeCCEEEEEEecCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33455444333     23333222222234556799999999999987543 2234555444443333  3478899999


Q ss_pred             ccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||.||+++.. .++.++|+|||++..+......       ....+++.+++|++.. +..++..|++++...+.
T Consensus       157 ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~-------~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~  228 (494)
T 3lij_A          157 IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKM-------KERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILF  228 (494)
T ss_dssp             EECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCB-------CCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHH
T ss_pred             ceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCccc-------cccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHH
Confidence            9999999999999741 2356999999999877543211       1123677788888876 44677789999998777


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       229 ~ll~  232 (494)
T 3lij_A          229 ILLA  232 (494)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6654

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.48  E-value=2.1e-13  Score=146.81  Aligned_cols=180  Identities=19%  Similarity=0.205  Sum_probs=115.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                  ...      -.
T Consensus        30 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~------~~   69 (353)
T 3coi_A           30 THVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSE----------------------------------IFA------KR   69 (353)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSH----------------------------------HHH------HH
T ss_pred             eeEecCCCeEEEEEEECCCCCEEEEEEecccccch----------------------------------HHH------HH
Confidence            7899999999999998  59999999885432111                                  011      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC-----CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT-----TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s-----t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                      +.+|+..+..+    .+..-+.+-.++....     ...+++|||++| +|.+...   ..++...+...+.+  ..+..
T Consensus        70 ~~~E~~~l~~l----~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~---~~~~~~~~~~i~~qi~~al~~  141 (353)
T 3coi_A           70 AYRELLLLKHM----QHENVIGLLDVFTPASSLRNFYDFYLVMPFMQT-DLQKIMG---LKFSEEKIQYLVYQMLKGLKY  141 (353)
T ss_dssp             HHHHHHHHHHC----CCTTBCCCSEEECSCSSGGGCCCCEEEEECCSE-EGGGTTT---SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCcccHhheEecccccccceeEEEEeccccC-CHHHHhc---CCCCHHHHHHHHHHHHHHHHH
Confidence            33455444443    2222233333332211     134999999996 6665432   23555555444433  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAV  528 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l  528 (766)
                      +|..|++|+|+||+||+++.  ++.++|+|||++...+....         -..++..++++++... +..+...|++++
T Consensus       142 LH~~~ivH~dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~---------~~~~t~~y~aPE~~~~~~~~~~~~Di~sl  210 (353)
T 3coi_A          142 IHSAGVVHRDLKPGNLAVNE--DCELKILDFGLARHADAEMT---------GYVVTRWYRAPEVILSWMHYNQTVDIWSV  210 (353)
T ss_dssp             HHHTTCCCSSCCGGGEEECT--TCCEEECSTTCTTC-----------------CCSBCCSCHHHHSCCSCCCTTHHHHHH
T ss_pred             HHHCCcccCCCCHHHEeECC--CCcEEEeecccccCCCCCcc---------ccccCcCcCCHHHHhCcCCCCchhhHHHH
Confidence            99999999999999999985  88999999999987654321         1234566777887754 455677899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       211 G~il~el~~  219 (353)
T 3coi_A          211 GCIMAEMLT  219 (353)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            987776653

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.48  E-value=2.4e-13  Score=148.03  Aligned_cols=180  Identities=18%  Similarity=0.207  Sum_probs=115.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                  ...      -.
T Consensus        48 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~------~~   87 (371)
T 4exu_A           48 THVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSE----------------------------------IFA------KR   87 (371)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSH----------------------------------HHH------HH
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEecccccch----------------------------------hHH------HH
Confidence            6899999999999998  59999999885432111                                  011      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCC-----CeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTT-----PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st-----~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                      +.+|+..+..+    .+..-+.+-.++.....     ..++||||++| .+.+..   ...++...+...+.+  ..+..
T Consensus        88 ~~~E~~~l~~l----~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~---~~~~~~~~~~~i~~qi~~aL~~  159 (371)
T 4exu_A           88 AYRELLLLKHM----QHENVIGLLDVFTPASSLRNFYDFYLVMPFMQT-DLQKIM---GMEFSEEKIQYLVYQMLKGLKY  159 (371)
T ss_dssp             HHHHHHHHHHC----CCTTBCCCSEEECSCSSSTTCCCCEEEEECCCE-EHHHHT---TSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCchhhhhheeccCCcccceeEEEEEccccc-cHHHHh---hcCCCHHHHHHHHHHHHHHHHH
Confidence            33444444443    22222333333322111     12999999996 555443   223555555444433  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAV  528 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l  528 (766)
                      +|..|++|+|+||.||+++.  ++.++|+|||++...+....         -..+++.++++++..- ...+...|++++
T Consensus       160 LH~~~ivH~Dikp~NIll~~--~~~~kL~Dfg~a~~~~~~~~---------~~~~t~~y~aPE~~~~~~~~~~~~Diwsl  228 (371)
T 4exu_A          160 IHSAGVVHRDLKPGNLAVNE--DCELKILDFGLARHADAEMT---------GYVVTRWYRAPEVILSWMHYNQTVDIWSV  228 (371)
T ss_dssp             HHHTTCCCSCCCGGGEEECT--TCCEEECSTTCC-----------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHH
T ss_pred             HHHCCCcCCCcCHHHeEECC--CCCEEEEecCcccccccCcC---------CcccCccccCHHHhcCCCCCCcHHhHHHH
Confidence            99999999999999999985  88999999999987654321         1235677888888764 456777899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       229 G~il~el~~  237 (371)
T 4exu_A          229 GCIMAEMLT  237 (371)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            988776653

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.48  E-value=1.4e-14  Score=154.87  Aligned_cols=198  Identities=13%  Similarity=0.093  Sum_probs=122.4

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||+|++|.||+|+.+|+.||||+.++......              .... .............          -.+.
T Consensus        37 ~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~----------~~~~   91 (348)
T 2pml_X           37 RTLNQGKFNKIILCEKDNKFYALKKYEKSLLEKK--------------RDFT-KSNNDKISIKSKY----------DDFK   91 (348)
T ss_dssp             EEEECCSSCCEEEEEETTEEEEEEEEEHHHHSSC--------------EEEC-CCSSSSCCEEEHH----------HHHH
T ss_pred             EEEcCCCCeEEEEEEcCCceEEEEEeecccccch--------------hhhc-cccchhhhHHhHH----------HHHH
Confidence            6899999999999999999999999853221100              0000 0000000000000          1344


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhh------hhhh-hcCCCHHHHHHHHHH--HHHHH
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRI------QSLD-ELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~------~~l~-~~g~d~~~la~~lv~--~~l~q  449 (766)
                      +|+..+.++    . ++++.-..-+.......++||||++|++|.++      .... ...++...+...+.+  ..+..
T Consensus        92 ~E~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~  166 (348)
T 2pml_X           92 NELQIITDI----K-NEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSY  166 (348)
T ss_dssp             HHHHHHTTC----C-CTTBCCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC----C-CCCcceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHH
Confidence            555555444    2 33332222222345678999999999999986      3211 233455444443333  34788


Q ss_pred             HHh-CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCC-CCCHH
Q 004234          450 ILS-HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVP-TGDTT  526 (766)
Q Consensus       450 I~~-~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~-~~D~~  526 (766)
                      +|. .|++|+|+||.||+++.  ++.++|+|||++..+.....        ....++..+++++....+ .... ..|++
T Consensus       167 lH~~~~i~H~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~~~Di~  236 (348)
T 2pml_X          167 IHNEKNICHRDVKPSNILMDK--NGRVKLSDFGESEYMVDKKI--------KGSRGTYEFMPPEFFSNESSYNGAKVDIW  236 (348)
T ss_dssp             HHHTSCEECCCCCGGGEEECT--TSCEEECCCTTCEECBTTEE--------CSSCSCGGGCCGGGGSSCCCEEHHHHHHH
T ss_pred             HhccCCEeecCCChHhEEEcC--CCcEEEeccccccccccccc--------cCCCCCcCccCchhhcCCCCCCcchhhHH
Confidence            998 99999999999999985  88999999999988754311        112456677777776554 2333 67888


Q ss_pred             HHHHHHHHHH
Q 004234          527 AVRRTAQFFL  536 (766)
Q Consensus       527 ~l~~~i~~~l  536 (766)
                      ++...+.+++
T Consensus       237 slG~il~~l~  246 (348)
T 2pml_X          237 SLGICLYVMF  246 (348)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887776655

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.47  E-value=2.8e-13  Score=143.90  Aligned_cols=184  Identities=15%  Similarity=0.157  Sum_probs=103.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.++......                                         +.+
T Consensus        28 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~-----------------------------------------~~~   66 (327)
T 3aln_A           28 GEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKE-----------------------------------------QKQ   66 (327)
T ss_dssp             CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHH-----------------------------------------HHH
T ss_pred             heeccCCCEEEEEEEEcCCCCEEEEEEeecccCchH-----------------------------------------HHH
Confidence            6799999999999999  599999999865432110                                         001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh----hhcCCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL----DELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l----~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      +..|...   +.... .+++|.-..-+....+..++||||++| .+.++...    ....++...+...+.+  ..+..+
T Consensus        67 ~~~e~~~---~~~~~-~h~niv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~l  141 (327)
T 3aln_A           67 LLMDLDV---VMRSS-DCPYIVQFYGALFREGDCWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHL  141 (327)
T ss_dssp             HHHHHHH---HHSSC-CCTTBCCEEEEEECSSEEEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---HHHcC-CCCcEeeeeeEEEeCCceEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHH
Confidence            1122211   11222 223332222222334667999999998 56554321    1223444444433332  347788


Q ss_pred             HhC-CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH----cCCCCCCCCH
Q 004234          451 LSH-GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ----MGVLVPTGDT  525 (766)
Q Consensus       451 ~~~-GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~----lG~~~~~~D~  525 (766)
                      |.. |++|+|+||.||+++.  ++.++|+|||++..+.......       ...++..++++++..    .+..++..|+
T Consensus       142 H~~~~ivH~dlkp~NIll~~--~~~~kl~Dfg~~~~~~~~~~~~-------~~~gt~~y~aPE~~~~~~~~~~~~~~~Di  212 (327)
T 3aln_A          142 KENLKIIHRDIKPSNILLDR--SGNIKLCDFGISGQLVDSIAKT-------RDAGCRPYMAPERIDPSASRQGYDVRSDV  212 (327)
T ss_dssp             HHHHSCCCSCCCGGGEEEET--TTEEEECCCSSSCC-------------------------------------CCSHHHH
T ss_pred             hccCCEeECCCCHHHEEEcC--CCCEEEccCCCceecccccccc-------cCCCCccccCceeeccccCcCCCCchhhH
Confidence            888 9999999999999985  8999999999998876543211       123567788888873    3345667799


Q ss_pred             HHHHHHHHHHHH
Q 004234          526 TAVRRTAQFFLN  537 (766)
Q Consensus       526 ~~l~~~i~~~l~  537 (766)
                      +++...+.+++.
T Consensus       213 ~slG~il~~l~~  224 (327)
T 3aln_A          213 WSLGITLYELAT  224 (327)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999887776653

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=152.16  Aligned_cols=198  Identities=14%  Similarity=0.145  Sum_probs=113.8

Q ss_pred             CChhhhhhccCcccccccceeEEEEEee----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHH
Q 004234          287 APLDDVFERFDVEPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (766)
Q Consensus       287 ~~~eeiF~~fd~~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~  362 (766)
                      ..+++.|. +....||.|++|.||+|+.    +|+.||||+....-..                                
T Consensus        16 ~~~~~~y~-~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~--------------------------------   62 (405)
T 3rgf_A           16 ERVEDLFE-YEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGIS--------------------------------   62 (405)
T ss_dssp             CCHHHHEE-CSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCC--------------------------------
T ss_pred             hhhhhhhh-hcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCC--------------------------------
Confidence            45666664 3345799999999999996    3789999987432100                                


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhhh--------cCC
Q 004234          363 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDE--------LGV  433 (766)
Q Consensus       363 i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-~st~~vLVMEyieG~~L~d~~~l~~--------~g~  433 (766)
                                  -.+.+|+..+.++    .+..-+.+-.++.. .....+|||||++| .+.++.....        ..+
T Consensus        63 ------------~~~~~E~~~l~~l----~hpniv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l  125 (405)
T 3rgf_A           63 ------------MSACREIALLREL----KHPNVISLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQL  125 (405)
T ss_dssp             ------------HHHHHHHHHHHHC----CCTTBCCCCEEEEETTTTEEEEEEECCSE-EHHHHHHHHHHHC-------C
T ss_pred             ------------HHHHHHHHHHHhc----CCCCeeeEeeEEecCCCCeEEEEEeCCCC-CHHHHHHHhccccccccccCC
Confidence                        0223444444444    22222333344432 24567999999997 4544332111        124


Q ss_pred             CHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEee--cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHH
Q 004234          434 DRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV  509 (766)
Q Consensus       434 d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~--~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v  509 (766)
                      +...+...+.+  ..+..+|..|++|+|+||+||++..  ..++.++|+|||++..+........   ......+++.++
T Consensus       126 ~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~---~~~~~~gt~~y~  202 (405)
T 3rgf_A          126 PRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLA---DLDPVVVTFWYR  202 (405)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC-------------------CCCTTC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccc---cCCCceecCccc
Confidence            44444333333  3478899999999999999999942  1368999999999988764322110   011124567788


Q ss_pred             HHHHHHc-CCCCCCCCHHHHHHHHHHHHH
Q 004234          510 LQAMVQM-GVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       510 ~~~l~~l-G~~~~~~D~~~l~~~i~~~l~  537 (766)
                      ++++..- +..+...|++++...+.+++.
T Consensus       203 aPE~~~~~~~~~~~~DiwSlG~il~ell~  231 (405)
T 3rgf_A          203 APELLLGARHYTKAIDIWAIGCIFAELLT  231 (405)
T ss_dssp             CHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             CchhhcCCCcccchhhhHHHHHHHHHHHh
Confidence            8887754 335667799999988777664

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.47  E-value=1.4e-13  Score=144.67  Aligned_cols=184  Identities=18%  Similarity=0.233  Sum_probs=102.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.++.....                                  +       +..
T Consensus        31 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~-------~~~   69 (318)
T 2dyl_A           31 GEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKE----------------------------------E-------NKR   69 (318)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEEEETTSCHH----------------------------------H-------HHH
T ss_pred             ceeeecCCeeEEEEEEecCCeEEEEEEecccccch----------------------------------H-------HHH
Confidence            6899999999999999  59999999985442111                                  0       001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh-C
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS-H  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~-~  453 (766)
                      +..|...   +.... ++++|.-..-+.......++||||+ |..+..+.......++...+...+.+  ..+..+|. +
T Consensus        70 ~~~~~~~---~~~~~-~h~~i~~~~~~~~~~~~~~lv~e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~  144 (318)
T 2dyl_A           70 ILMDLDV---VLKSH-DCPYIVQCFGTFITNTDVFIAMELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKH  144 (318)
T ss_dssp             HHHHHHH---HHHTT-TCTTBCCEEEEEECSSEEEEEECCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---HHHhc-CCCceeeEEEEEecCCcEEEEEecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence            1111111   11122 2333322222233456679999999 55555544322334555554444333  34778887 5


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCCCCCCCCHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGVLVPTGDTTAV  528 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~-----lG~~~~~~D~~~l  528 (766)
                      |++|+|+||.||+++.  ++.++|+|||++..+.......       ...++..++++++..     .+..+...|++++
T Consensus       145 ~i~H~dlkp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~sl  215 (318)
T 2dyl_A          145 GVIHRDVKPSNILLDE--RGQIKLCDFGISGRLVDDKAKD-------RSAGCAAYMAPERIDPPDPTKPDYDIRADVWSL  215 (318)
T ss_dssp             CCCCCCCCGGGEEECT--TSCEEECCCTTC---------------------CCTTCCHHHHC--------CCTHHHHHHH
T ss_pred             CEEeCCCCHHHEEECC--CCCEEEEECCCchhccCCcccc-------ccCCCccccChhhcccccccccCCccccchhhH
Confidence            9999999999999985  8899999999998775533211       123456677777763     3345566799999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       216 G~il~~l~~  224 (318)
T 2dyl_A          216 GISLVELAT  224 (318)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            887766653

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.46  E-value=7.7e-14  Score=149.89  Aligned_cols=196  Identities=16%  Similarity=0.127  Sum_probs=121.4

Q ss_pred             hhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          293 FERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       293 F~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      +..|.. +.||+|++|.||+|+.  +|+.||||+........                           ..         
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------~~---------   59 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE---------------------------GF---------   59 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSS---------------------------SS---------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccc---------------------------cc---------
Confidence            344443 7899999999999998  59999999874432111                           00         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeecc-------CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY-------TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA  442 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-------st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l  442 (766)
                          ...+.+|++.+..+    .+..-+.+-.++...       .+..++||||++| .+.+........++...+...+
T Consensus        60 ----~~~~~~E~~~l~~l----~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~  130 (351)
T 3mi9_A           60 ----PITALREIKILQLL----KHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVM  130 (351)
T ss_dssp             ----CHHHHHHHHHHHHC----CCTTBCCEEEEEEEC--------CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHhc----cCCCcccHhheeeccccccccCCceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHH
Confidence                01233455555444    222222333333221       3356999999998 4444332222335555544443


Q ss_pred             HH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCC
Q 004234          443 VE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVL  519 (766)
Q Consensus       443 v~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~  519 (766)
                      .+  ..+..+|..|++|+|+||+||+++.  ++.++|+|||++..++........  ......+++.++++++..- ...
T Consensus       131 ~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~  206 (351)
T 3mi9_A          131 QMLLNGLYYIHRNKILHRDMKAANVLITR--DGVLKLADFGLARAFSLAKNSQPN--RYTNRVVTLWYRPPELLLGERDY  206 (351)
T ss_dssp             HHHHHHHHHHHHTTEECCCCSGGGEEECT--TSCEEECCCTTCEECCCCSSSSCC--CCCSSCSCGGGCCHHHHTTCCSC
T ss_pred             HHHHHHHHHHHHCCeeCCCCCHHHEEEcC--CCCEEEccchhccccccccccccc--ccCCcccccCccCchhhcCCCCC
Confidence            33  3478899999999999999999985  889999999999876522110000  0011234677888887743 345


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 004234          520 VPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       520 ~~~~D~~~l~~~i~~~l~  537 (766)
                      ++..|++++...+.+++.
T Consensus       207 ~~~~DiwslG~il~ell~  224 (351)
T 3mi9_A          207 GPPIDLWGAGCIMAEMWT  224 (351)
T ss_dssp             CTHHHHHHHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHh
Confidence            677899999987766653

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.46  E-value=4.2e-14  Score=157.07  Aligned_cols=191  Identities=12%  Similarity=0.102  Sum_probs=115.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+..+.....                    ..              .........
T Consensus       141 ~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~--------------------~~--------------~~~~~~~~~  186 (419)
T 3i6u_A          141 KTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAI--------------------GS--------------AREADPALN  186 (419)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTT--------------------C----------------------CC
T ss_pred             eEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcc--------------------cc--------------cccchhHHH
Confidence            6899999999999998  58999999985432110                    00              000001124


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++    .+..-+.+-.++  .....++||||++|++|.+.... ...++...+...+.+  ..+..+|..|
T Consensus       187 ~~~E~~~l~~l----~hpniv~l~~~~--~~~~~~lv~e~~~~g~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~  259 (419)
T 3i6u_A          187 VETEIEILKKL----NHPCIIKIKNFF--DAEDYYIVLELMEGGELFDKVVG-NKRLKEATCKLYFYQMLLAVQYLHENG  259 (419)
T ss_dssp             HHHHHHHHHHC----CCTTBCCCCEEE--ESSEEEEEEECCTTCBGGGGTSS-SCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----CCCCEeeEEEEE--ecCceEEEEEcCCCCcHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            55666666555    222223333333  23457999999999999876432 223454444333322  3478899999


Q ss_pred             ccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCCHHHHHH
Q 004234          455 FFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRR  530 (766)
Q Consensus       455 ffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~---lG~~~~~~D~~~l~~  530 (766)
                      ++|+|+||.||+++.. .++.++|+|||++..++.....   .    ...+++.++++++..   .+..++..|++++..
T Consensus       260 ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~~---~----~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~  332 (419)
T 3i6u_A          260 IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLM---R----TLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGV  332 (419)
T ss_dssp             CCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC------------------CTTCCTTTTC----CTTHHHHHHHHHHH
T ss_pred             ccccCCChHhEEEecCCCcceEEEeecccceecCCCccc---c----ccCCCCCccCceeeecCCCCCCCchhhhHhHHH
Confidence            9999999999999741 1346999999999988654221   1    123456667776642   233344568888887


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       333 il~~llt  339 (419)
T 3i6u_A          333 ILFICLS  339 (419)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766654

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.46  E-value=4.7e-14  Score=148.64  Aligned_cols=193  Identities=12%  Similarity=0.055  Sum_probs=122.8

Q ss_pred             ccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      .|.. +.||+|++|.||+|+.  +|+.||||+.+........                                    ..
T Consensus        32 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~------------------------------------~~   75 (312)
T 2iwi_A           32 EYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWS------------------------------------PL   75 (312)
T ss_dssp             -CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC-----------------------------------------
T ss_pred             ceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccc------------------------------------cc
Confidence            3433 6899999999999998  6899999998543221100                                    00


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEee-cCCCChhhhhhhhhcCCCHHHHHHHHHH--HH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEY-VPGIKINRIQSLDELGVDRKRLGRYAVE--SY  446 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEy-ieG~~L~d~~~l~~~g~d~~~la~~lv~--~~  446 (766)
                      .....+.+|...+.++.....+ ++  +++++.  ......+++||| ++|++|.++... ...++...+...+.+  ..
T Consensus        76 ~~~~~~~~e~~~l~~l~~~~~h-~~--i~~~~~~~~~~~~~~~v~e~~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~  151 (312)
T 2iwi_A           76 SDSVTCPLEVALLWKVGAGGGH-PG--VIRLLDWFETQEGFMLVLERPLPAQDLFDYITE-KGPLGEGPSRCFFGQVVAA  151 (312)
T ss_dssp             ---CCCCHHHHHHHHHHSSCCC-SS--BCCEEEEC-----CEEEEECCSSEEEHHHHHHH-HCSCCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhcccCCC-CC--eeeEEEEEecCCeEEEEEEecCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHH
Confidence            1122344566666665432222 22  333333  234567999999 899999987542 223555544444333  34


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC-CCCCH
Q 004234          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV-PTGDT  525 (766)
Q Consensus       447 l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~-~~~D~  525 (766)
                      +..+|..|++|+|+||.||+++. .++.++|+|||++..+......        ...++..++++++...+... ...|+
T Consensus       152 l~~lH~~~i~H~dlkp~Nil~~~-~~~~~kl~dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~Di  222 (312)
T 2iwi_A          152 IQHCHSRGVVHRDIKDENILIDL-RRGCAKLIDFGSGALLHDEPYT--------DFDGTRVYSPPEWISRHQYHALPATV  222 (312)
T ss_dssp             HHHHHHHTEECCCCSGGGEEEET-TTTEEEECCCSSCEECCSSCBC--------CCCSCTTTSCHHHHHHSCBCHHHHHH
T ss_pred             HHHHHHCCeeecCCChhhEEEeC-CCCeEEEEEcchhhhcccCccc--------ccCCcccccCceeeecCCCCCccchH
Confidence            78899999999999999999983 3789999999999887654211        12356667778777654432 35788


Q ss_pred             HHHHHHHHHHH
Q 004234          526 TAVRRTAQFFL  536 (766)
Q Consensus       526 ~~l~~~i~~~l  536 (766)
                      +++...+.+++
T Consensus       223 ~slG~il~~l~  233 (312)
T 2iwi_A          223 WSLGILLYDMV  233 (312)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88887766654

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.45  E-value=1.2e-13  Score=145.04  Aligned_cols=186  Identities=15%  Similarity=0.074  Sum_probs=109.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+....-...                                    .      -.
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~------------------------------------~------~~   54 (320)
T 2i6l_A           17 KPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQS------------------------------------V------KH   54 (320)
T ss_dssp             EECC-----CEEEEEETTTTEEEEEEEEECCSHHH------------------------------------H------HH
T ss_pred             EEeccCCCeEEEEEEECCCCeEEEEEEEecCChHH------------------------------------H------HH
Confidence            6899999999999999  49999999874331110                                    0      02


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee-------------ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW-------------EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV  443 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~-------------e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv  443 (766)
                      +.+|.+.+.++    .+..-+.+-.++.             ......+++|||++| +|.++..  ...++...+...+.
T Consensus        55 ~~~e~~~l~~l----~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~--~~~~~~~~~~~~~~  127 (320)
T 2i6l_A           55 ALREIKIIRRL----DHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMET-DLANVLE--QGPLLEEHARLFMY  127 (320)
T ss_dssp             HHHHHHHHHTC----CCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEEECCSE-EHHHHHT--TCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCeeEEEEeccccccccccccccccccCceeEEeeccCC-CHHHHhh--cCCccHHHHHHHHH
Confidence            33444444333    2221122222221             112456899999996 7877643  23345444433332


Q ss_pred             H--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCC
Q 004234          444 E--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLV  520 (766)
Q Consensus       444 ~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~  520 (766)
                      +  ..+..+|..|++|+|+||+||+++. .++.++|+|||++..+++.....-   ......++..+++++.... +..+
T Consensus       128 qi~~~l~~lH~~~i~H~dlkp~Nil~~~-~~~~~kl~Dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~  203 (320)
T 2i6l_A          128 QLLRGLKYIHSANVLHRDLKPANLFINT-EDLVLKIGDFGLARIMDPHYSHKG---HLSEGLVTKWYRSPRLLLSPNNYT  203 (320)
T ss_dssp             HHHHHHHHHHHTTCBCCCCSGGGEEEET-TTTEEEECCCTTCBCC-----------CCCGGGSCCTTCCHHHHHCTTCCC
T ss_pred             HHHHHHHHHHhCCEecCCCCHHHEEEcC-CCCeEEEccCccccccCCCccccc---ccccccccccccCcHHhcCcccCC
Confidence            2  3478899999999999999999974 367999999999988754321100   0011123455667776654 4455


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~l~  537 (766)
                      ...|++++...+.+++.
T Consensus       204 ~~~Di~slG~il~el~~  220 (320)
T 2i6l_A          204 KAIDMWAAGCIFAEMLT  220 (320)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             chhhhHhHHHHHHHHHh
Confidence            66799999887766653

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.45  E-value=2.3e-13  Score=146.05  Aligned_cols=184  Identities=16%  Similarity=0.161  Sum_probs=104.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+...+....                             .              .
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-----------------------------~--------------~   65 (360)
T 3e3p_A           29 RMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFR-----------------------------N--------------R   65 (360)
T ss_dssp             ----------CEEEEETTTCCEEEEEEEECCTTCC-----------------------------C--------------H
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEecCcccc-----------------------------H--------------H
Confidence            6899999999999998  59999999874321100                             0              0


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCC------CeEEEEeecCCCChhhhhhh--hhcCCCHHHHHHHHHH--HH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTT------PQILTMEYVPGIKINRIQSL--DELGVDRKRLGRYAVE--SY  446 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st------~~vLVMEyieG~~L~d~~~l--~~~g~d~~~la~~lv~--~~  446 (766)
                      +..|.+.+..+    .+..-+.+-.++.....      ..++||||++|.....+...  .....+...+...+.+  ..
T Consensus        66 ~~~~~~~l~~l----~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~a  141 (360)
T 3e3p_A           66 ELQIMQDLAVL----HHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRS  141 (360)
T ss_dssp             HHHHHHHHHHH----CCTTBCCEEEEEEEECSSCTTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCcccHHHhhhccccccccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHH
Confidence            11222222222    22222223233322111      16899999998644333221  1223344433333322  33


Q ss_pred             HHHHH--hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCC
Q 004234          447 LEQIL--SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTG  523 (766)
Q Consensus       447 l~qI~--~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~  523 (766)
                      +..+|  ..|++|+|+||+||+++. .++.++|+|||++..++.....       ....++..++++++..- ...+...
T Consensus       142 l~~lH~~~~~ivH~Dlkp~NIll~~-~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~  213 (360)
T 3e3p_A          142 IGCLHLPSVNVCHRDIKPHNVLVNE-ADGTLKLCDFGSAKKLSPSEPN-------VAYICSRYYRAPELIFGNQHYTTAV  213 (360)
T ss_dssp             HHHHTSTTTCCBCSCCCGGGEEEET-TTTEEEECCCTTCBCCCTTSCC-------CSTTSCGGGCCHHHHTTCSSCCTHH
T ss_pred             HHHHhCCCCCeecCcCCHHHEEEeC-CCCcEEEeeCCCceecCCCCCc-------ccccCCcceeCHHHHcCCCCCCcHH
Confidence            67788  999999999999999984 3789999999999987654321       11235677888887743 3356778


Q ss_pred             CHHHHHHHHHHHHH
Q 004234          524 DTTAVRRTAQFFLN  537 (766)
Q Consensus       524 D~~~l~~~i~~~l~  537 (766)
                      |++++...+.+++.
T Consensus       214 Di~slG~il~ell~  227 (360)
T 3e3p_A          214 DIWSVGCIFAEMML  227 (360)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999987776653

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.44  E-value=4.6e-14  Score=147.82  Aligned_cols=189  Identities=16%  Similarity=0.135  Sum_probs=117.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|..  +|+.||||+.+......                  .                    -..+-.
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~------------------~--------------------~~~~~~   52 (305)
T 2wtk_C           11 DLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRR------------------I--------------------PNGEAN   52 (305)
T ss_dssp             CEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHH------------------S--------------------TTHHHH
T ss_pred             eEEecCCCeEEEEEEECCCCcEEEEEEeccccccc------------------c--------------------chhHHH
Confidence            7899999999999998  58999999874211000                  0                    001223


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee-ccCCCeEEEEeecCCCChhhhh-hhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQ-SLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~-e~st~~vLVMEyieG~~L~d~~-~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      +.+|++.+.++    .+..-+.+-.++. +.....++||||++|+ +.+.. ......++...+...+.+  ..+..+|.
T Consensus        53 ~~~E~~~l~~l----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~  127 (305)
T 2wtk_C           53 VKKEIQLLRRL----RHKNVIQLVDVLYNEEKQKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHS  127 (305)
T ss_dssp             HHHHHHHHTTC----CCTTBCCEEEEEECC---CEEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCeeEEEEEEEcCCCCeEEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHH
Confidence            45555554443    2222223333322 2234679999999987 44432 223334555554444433  34788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC--CCCCCCHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV--LVPTGDTTAVRR  530 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~--~~~~~D~~~l~~  530 (766)
                      .|++|+|+||.||+++.  ++.++|+|||++..+.+......    .....++..++++++....-  .+...|++++..
T Consensus       128 ~~i~H~dlkp~NIl~~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~  201 (305)
T 2wtk_C          128 QGIVHKDIKPGNLLLTT--GGTLKISALGVAEALHPFAADDT----CRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGV  201 (305)
T ss_dssp             TTEECSCCSGGGEEECT--TCCEEECCCTTCEECCTTCSSCE----ECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHH
T ss_pred             CCeeecCCCcccEEEcC--CCcEEeeccccccccCccccccc----cccCCCCCCCcChhhccCcccCCcchhhHHHHHH
Confidence            99999999999999985  88999999999987754211100    01123567788888775322  234578888887


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       202 il~~l~  207 (305)
T 2wtk_C          202 TLYNIT  207 (305)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766654

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.44  E-value=1.1e-13  Score=151.14  Aligned_cols=119  Identities=18%  Similarity=0.223  Sum_probs=80.7

Q ss_pred             eEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004234          410 QILTMEYVPGIKINRIQSL---DELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (766)
Q Consensus       410 ~vLVMEyieG~~L~d~~~l---~~~g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (766)
                      .++||||++| +|.+....   ....++...+...+.+  ..+..+|..|++|+|+||+||+++. .++.++|+|||++.
T Consensus       113 ~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~gi~H~Dikp~Nil~~~-~~~~~kl~Dfg~a~  190 (383)
T 3eb0_A          113 LNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNS-KDNTLKLCDFGSAK  190 (383)
T ss_dssp             EEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEEET-TTTEEEECCCTTCE
T ss_pred             EEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCcCccCccCHHHEEEcC-CCCcEEEEECCCCc
Confidence            5799999997 65554321   1223444444333322  3478899999999999999999973 37899999999998


Q ss_pred             ccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHHHH
Q 004234          485 SISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       485 ~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~~i~~~l~  537 (766)
                      .+.+....       ....++..++++++..-. ..+...|++++...+.+++.
T Consensus       191 ~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~  237 (383)
T 3eb0_A          191 KLIPSEPS-------VAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELIL  237 (383)
T ss_dssp             ECCTTSCC-------CCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCC-------cCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHh
Confidence            87554321       012345567777776532 35667799999887776653

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.44  E-value=1.3e-13  Score=153.74  Aligned_cols=186  Identities=16%  Similarity=0.051  Sum_probs=113.3

Q ss_pred             cccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      .+.||+|++|.||.+.. +|+.||||+..++..+                                             .
T Consensus        20 ~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~~---------------------------------------------~   54 (434)
T 2rio_A           20 EKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCD---------------------------------------------I   54 (434)
T ss_dssp             EEEEEECSTTCEEEEEESSSSEEEEEEEEGGGHH---------------------------------------------H
T ss_pred             cCeEeeCCCeEEEEEEEECCeEEEEEEEcHHHHH---------------------------------------------H
Confidence            46899999999976655 8999999987432110                                             1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCC---------CHHHHHHHHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV---------DRKRLGRYAVESYL  447 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~---------d~~~la~~lv~~~l  447 (766)
                      +.+|.+.+.+..    ++++|.-..-+.......+|||||++| +|.++........         ....++..++ ..+
T Consensus        55 ~~~E~~~l~~l~----~HpnIv~~~~~~~~~~~~~lv~E~~~g-sL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~-~aL  128 (434)
T 2rio_A           55 ALMEIKLLTESD----DHPNVIRYYCSETTDRFLYIALELCNL-NLQDLVESKNVSDENLKLQKEYNPISLLRQIA-SGV  128 (434)
T ss_dssp             HHHHHHHHHHHT----TSTTBCCEEEEEECSSEEEEEECCCSE-EHHHHHHTC------------CCHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHhcc----CCCCcCeEEEEEecCCeEEEEEecCCC-CHHHHHhccCCCchhhhhccchhHHHHHHHHH-HHH
Confidence            123443333321    234332222222334556999999976 8888654221111         1112333333 347


Q ss_pred             HHHHhCCccccCCCCCcEEEeec-----------CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004234          448 EQILSHGFFHADPHPGNIAVDDV-----------NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~-----------~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l  516 (766)
                      ..+|..|++|+|+||.||+++..           .++.++|+|||++..+.........  ......+++.++++++..-
T Consensus       129 ~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~  206 (434)
T 2rio_A          129 AHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRT--NLNNPSGTSGWRAPELLEE  206 (434)
T ss_dssp             HHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC----------------CCTTSCHHHHSC
T ss_pred             HHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCcccee--eecCCCCCCCccCHHHhcc
Confidence            88999999999999999999741           2358999999999988764321110  1112346778899998864


Q ss_pred             -------CCCCCCCCHHHHHHHHHHHH
Q 004234          517 -------GVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       517 -------G~~~~~~D~~~l~~~i~~~l  536 (766)
                             +..++..|++++...+.+++
T Consensus       207 ~~~~~~~~~~~~~~DiwSlG~il~ell  233 (434)
T 2rio_A          207 SNNLQTKRRLTRSIDIFSMGCVFYYIL  233 (434)
T ss_dssp             CCTTSCCCCCCTHHHHHHHHHHHHHHH
T ss_pred             ccccccccCcchhhhhHhHHHHHHHHH
Confidence                   44566789999998777665

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.44  E-value=7.2e-14  Score=148.78  Aligned_cols=189  Identities=12%  Similarity=0.090  Sum_probs=122.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.++......              ... .                     .+-.
T Consensus        49 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~--------------~~~-~---------------------~~~~   92 (320)
T 3a99_A           49 PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDW--------------GEL-P---------------------NGTR   92 (320)
T ss_dssp             EECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCE--------------EEC-T---------------------TCCE
T ss_pred             EEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhh--------------hhh-h---------------------hhhH
Confidence            6899999999999998  699999999854422110              000 0                     0012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCC-CChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPG-IKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG-~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|+..+.++..   ..+++.-..-+.......+++|||+++ .+|.++... ...++...+...+.+  ..+..+|..
T Consensus        93 ~~~E~~~l~~l~~---~~~~i~~~~~~~~~~~~~~lv~e~~~~~~~L~~~l~~-~~~l~~~~~~~i~~qi~~~L~~LH~~  168 (320)
T 3a99_A           93 VPMEVVLLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITE-RGALQEELARSFFWQVLEAVRHCHNC  168 (320)
T ss_dssp             EEHHHHHHHHHCS---SSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhcc---CCCCceEEEEEEecCCcEEEEEEcCCCCccHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            3344444444432   223332222222345667999999986 788876532 233454444433322  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~-~~~~D~~~l~~~i  532 (766)
                      |++|+|+||.||+++. +++.++|+|||++..+......        ...++..++++++...+.. ++..|++++...+
T Consensus       169 ~ivH~Dlkp~NIll~~-~~~~~kL~Dfg~~~~~~~~~~~--------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il  239 (320)
T 3a99_A          169 GVLHRDIKDENILIDL-NRGELKLIDFGSGALLKDTVYT--------DFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILL  239 (320)
T ss_dssp             TEECCCCSGGGEEEET-TTTEEEECCCTTCEECCSSCBC--------CCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHH
T ss_pred             CcEeCCCCHHHEEEeC-CCCCEEEeeCcccccccccccc--------CCCCCccCCChHHhccCCCCCccchHHhHHHHH
Confidence            9999999999999983 3789999999999887653211        1236777888887765543 4556899988877


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       240 ~el~  243 (320)
T 3a99_A          240 YDMV  243 (320)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.44  E-value=5.5e-13  Score=140.22  Aligned_cols=149  Identities=13%  Similarity=0.138  Sum_probs=97.6

Q ss_pred             hhhhhccCc--ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004234          290 DDVFERFDV--EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (766)
Q Consensus       290 eeiF~~fd~--~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (766)
                      ++++..+..  +.||+|++|.||+|+.  +|+.||||+.+..-                                     
T Consensus        13 ~~~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-------------------------------------   55 (299)
T 3m2w_A           13 NAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCP-------------------------------------   55 (299)
T ss_dssp             SCGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSH-------------------------------------
T ss_pred             cccccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecccH-------------------------------------
Confidence            344554443  5799999999999998  69999999873210                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeecc---CCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHH
Q 004234          366 ECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY---TTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRY  441 (766)
Q Consensus       366 E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~---st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~  441 (766)
                                .+.+|...+.+.   ..+..-+.+-.++...   ....++||||++|++|.++..... ..++...+...
T Consensus        56 ----------~~~~e~~~~~~~---~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i  122 (299)
T 3m2w_A           56 ----------KARREVELHWRA---SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEI  122 (299)
T ss_dssp             ----------HHHHHHHHHHHH---TTSTTBCCEEEEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHH
T ss_pred             ----------HHHHHHHHHHHh---ccCCCchhHHhhhhhhcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHH
Confidence                      111222222221   1222222333333221   344699999999999998754322 23555555444


Q ss_pred             HHH--HHHHHHHhCCccccCCCCCcEEEeecC-CCcEEEEeecceeccCh
Q 004234          442 AVE--SYLEQILSHGFFHADPHPGNIAVDDVN-GGRLIFYDFGMMGSISP  488 (766)
Q Consensus       442 lv~--~~l~qI~~~GffHaDpHPGNILV~~~~-~g~l~LiDFGlv~~L~~  488 (766)
                      +.+  ..+..+|..|++|+|+||.||+++... ++.++|+|||++..+..
T Consensus       123 ~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~  172 (299)
T 3m2w_A          123 MKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTG  172 (299)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTT
T ss_pred             HHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEecccccccccc
Confidence            433  347889999999999999999998521 57899999999987764

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.43  E-value=2.4e-13  Score=141.73  Aligned_cols=184  Identities=15%  Similarity=0.119  Sum_probs=117.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|.||+|+.  +|+.||||+.++.....                          .+.              -.
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~--------------------------~~~--------------~~   67 (287)
T 2wei_A           28 CMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN--------------------------KDT--------------ST   67 (287)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSS--------------------------SCH--------------HH
T ss_pred             EEEcCCCCEEEEEEEEcCCCcEEEEEEecccccch--------------------------HHH--------------HH
Confidence            6899999999999998  59999999975432111                          000              12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++    . ++++.-..-+.......+++|||++|++|.+.... ...++...+...+.+  ..+..+|..|
T Consensus        68 ~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~  141 (287)
T 2wei_A           68 ILREVELLKKL----D-HPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIK-RKRFSEHDAARIIKQVFSGITYMHKHN  141 (287)
T ss_dssp             HHHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhc----c-CCCccEEEEEEeCCCeEEEEEEccCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34455444443    2 23332222222335667999999999999875432 234555555444433  3478899999


Q ss_pred             ccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|++|.||+++.. .++.++|+|||++..+.......-       ..++..+++++... |..+...|++++...+.
T Consensus       142 i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~~-------~~~~~~y~aPE~~~-~~~~~~~Di~slG~~l~  213 (287)
T 2wei_A          142 IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKD-------RIGTAYYIAPEVLR-GTYDEKCDVWSAGVILY  213 (287)
T ss_dssp             CCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSCSC-------HHHHHTTCCHHHHT-TCCCTHHHHHHHHHHHH
T ss_pred             eeccCCChhhEEEecCCCcccEEEeccCcceeecCCCcccc-------ccCcccccChHHhc-CCCCCchhhHhHHHHHH
Confidence            9999999999999752 134799999999987654321100       01234455666654 44566779999987766


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       214 ~l~  216 (287)
T 2wei_A          214 ILL  216 (287)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.43  E-value=2.5e-13  Score=141.61  Aligned_cols=183  Identities=12%  Similarity=0.028  Sum_probs=117.4

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ..||+|++|.||+|..  ++..||+|+........                                  +-..      .
T Consensus        32 ~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~----------------------------------~~~~------~   71 (290)
T 1t4h_A           32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTK----------------------------------SERQ------R   71 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH----------------------------------HHHH------H
T ss_pred             eeccCCCCeEEEEeEecCCceEEEEEEecchhhCH----------------------------------HHHH------H
Confidence            4699999999999998  58899999874321110                                  0011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeecc---CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEY---TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~---st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      +.+|+..+..+    . ++++ .+-.++...   ....++||||++|++|.++... ....+...+...+.+  ..+..+
T Consensus        72 ~~~e~~~l~~l----~-h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~l  145 (290)
T 1t4h_A           72 FKEEAEMLKGL----Q-HPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKR-FKVMKIKVLRSWCRQILKGLQFL  145 (290)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----C-CCCeeeeeeeeccccCCCceEEEEEEecCCCCHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHH
Confidence            33444444333    2 2322 222222211   1236999999999999987542 233455444443333  347889


Q ss_pred             HhCC--ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          451 LSHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       451 ~~~G--ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      |..|  ++|+|+||.||+++. .++.++|+|||++..........        ..+++.++++++.. +..++..|++++
T Consensus       146 H~~~~~i~H~dikp~Nil~~~-~~~~~kl~Dfg~~~~~~~~~~~~--------~~~t~~y~aPE~~~-~~~~~~~Di~sl  215 (290)
T 1t4h_A          146 HTRTPPIIHRDLKCDNIFITG-PTGSVKIGDLGLATLKRASFAKA--------VIGTPEFMAPEMYE-EKYDESVDVYAF  215 (290)
T ss_dssp             HTSSSCCCCSCCCGGGEEESS-TTSCEEECCTTGGGGCCTTSBEE--------SCSSCCCCCGGGGG-TCCCTHHHHHHH
T ss_pred             HcCCCCEEECCCCHHHEEEEC-CCCCEEEeeCCCccccccccccc--------ccCCcCcCCHHHHh-ccCCCcchHHHH
Confidence            9999  999999999999973 37899999999997655432211        23455666676655 445677899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       216 G~~l~~l~~  224 (290)
T 1t4h_A          216 GMCMLEMAT  224 (290)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            887766653

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.41  E-value=2.5e-13  Score=150.81  Aligned_cols=181  Identities=19%  Similarity=0.202  Sum_probs=113.8

Q ss_pred             cccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      .+.||.|+||.||+|++  +|+.||||+...+...                                             
T Consensus        59 ~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~~---------------------------------------------   93 (420)
T 1j1b_A           59 TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF---------------------------------------------   93 (420)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEECCTTS---------------------------------------------
T ss_pred             eeEEeeCCCEEEEEEEECCCCcEEEEEEecccchh---------------------------------------------
Confidence            36899999999999999  5999999987433110                                             


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccC---C--CeEEEEeecCCCChhhhh-hh--hhcCCCHHHHHHHHHH--H
Q 004234          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYT---T--PQILTMEYVPGIKINRIQ-SL--DELGVDRKRLGRYAVE--S  445 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s---t--~~vLVMEyieG~~L~d~~-~l--~~~g~d~~~la~~lv~--~  445 (766)
                       +.+|.+.+.+    +.+..-+.+..++....   +  ..+|||||++|. +.++. ..  ....++...+...+.+  .
T Consensus        94 -~~~E~~il~~----l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~l~~~~~~~~~~qi~~  167 (420)
T 1j1b_A           94 -KNRELQIMRK----LDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPET-VYRVARHYSRAKQTLPVIYVKLYMYQLFR  167 (420)
T ss_dssp             -CCHHHHHHHT----CCCTTBCCEEEEEEEEETTTTEEEEEEEEECCCEE-HHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHH----cCCCCccceeeEEeccCCCCcceeEEeehhccccc-HHHHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence             0123333322    22222233333332211   1  146899999984 33322 11  1223444444333333  3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCC
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGD  524 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D  524 (766)
                      .+..+|..|++|+|+||.|||++. +++.++|+|||++..+......       ....++..+++++++.- ...+...|
T Consensus       168 aL~~LH~~~ivHrDlkp~NILl~~-~~~~~kl~DFG~a~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~~D  239 (420)
T 1j1b_A          168 SLAYIHSFGICHRDIKPQNLLLDP-DTAVLKLCDFGSAKQLVRGEPN-------VSYICSRYYRAPELIFGATDYTSSID  239 (420)
T ss_dssp             HHHHHHTTTEECSCCSGGGEEEET-TTTEEEECCCTTCEECCTTCCC-------CSCCSCTTSCCHHHHTTCSSCCTHHH
T ss_pred             HHHHHHHCCccccCCChhhEEEeC-CCCeEEeccchhhhhcccCCCc-------eeeeeCCCcCCHHHHcCCCCCCchhh
Confidence            478899999999999999999984 3467899999999887543211       01234667888887753 24566779


Q ss_pred             HHHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFLN  537 (766)
Q Consensus       525 ~~~l~~~i~~~l~  537 (766)
                      ++++...+.+++.
T Consensus       240 iwSlG~il~ell~  252 (420)
T 1j1b_A          240 VWSAGCVLAELLL  252 (420)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh
Confidence            9999988777653

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.39  E-value=3.2e-13  Score=150.92  Aligned_cols=185  Identities=14%  Similarity=0.096  Sum_probs=110.9

Q ss_pred             ccccccceeEE-EEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQV-HRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQV-hrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||.|++|+| |++..+|+.||||+..+.......                                            
T Consensus        30 ~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~~~~--------------------------------------------   65 (432)
T 3p23_A           30 DVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFAD--------------------------------------------   65 (432)
T ss_dssp             EEEEECGGGCEEEEEESSSSEEEEEEECTTTEEECH--------------------------------------------
T ss_pred             CeeecCcCEEEEEEEEeCCeEEEEEEECHHHHHHHH--------------------------------------------
Confidence            68999999995 445558999999998654332211                                            


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcC---CCHHHHHHHHHHHHHHHHHhCC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG---VDRKRLGRYAVESYLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g---~d~~~la~~lv~~~l~qI~~~G  454 (766)
                       +|.+.+..    +..+++|.-..-+.......+|||||++| +|.++.......   .....++..++ ..+..+|..|
T Consensus        66 -~E~~~l~~----l~~HpnIv~l~~~~~~~~~~~lv~E~~~g-~L~~~l~~~~~~~~~~~~~~i~~qi~-~aL~~LH~~~  138 (432)
T 3p23_A           66 -REVQLLRE----SDEHPNVIRYFCTEKDRQFQYIAIELCAA-TLQEYVEQKDFAHLGLEPITLLQQTT-SGLAHLHSLN  138 (432)
T ss_dssp             -HHHHHHHH----SCCCTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHSSSCCCCSSCHHHHHHHHH-HHHHHHHHTT
T ss_pred             -HHHHHHHh----ccCCCCcCeEEEEEecCCEEEEEEECCCC-CHHHHHHhcCCCccchhHHHHHHHHH-HHHHHHHHCc
Confidence             12222222    11233332222222334556999999987 777765332222   22334443333 4578899999


Q ss_pred             ccccCCCCCcEEEeec-CC--CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc---CCCCCCCCHHHH
Q 004234          455 FFHADPHPGNIAVDDV-NG--GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM---GVLVPTGDTTAV  528 (766)
Q Consensus       455 ffHaDpHPGNILV~~~-~~--g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l---G~~~~~~D~~~l  528 (766)
                      ++|+|+||+||+++.. .+  .+++|+|||++..+....... ..  .....+++.++++++..-   +..+...|++++
T Consensus       139 ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~-~~--~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSl  215 (432)
T 3p23_A          139 IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSF-SR--RSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSA  215 (432)
T ss_dssp             CCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC---------------CCSCTTSCCGGGTSCC---CCCTHHHHHHH
T ss_pred             CEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcce-ee--ccccCCCcCccChhhhhcccccCCCcHHHHHHH
Confidence            9999999999999631 12  358899999999886542211 10  112346778888887752   333446799999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       216 G~il~ellt  224 (432)
T 3p23_A          216 GCVFYYVIS  224 (432)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            887766653

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.38  E-value=1.2e-13  Score=162.54  Aligned_cols=190  Identities=17%  Similarity=0.166  Sum_probs=124.1

Q ss_pred             hhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          293 FERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       293 F~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      +..|.. +.||+|++|.||+|+.  +|+.||||+.++.....                                      
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~--------------------------------------   54 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPK--------------------------------------   54 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHH--------------------------------------
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHH--------------------------------------
Confidence            344543 7899999999999998  59999999886542211                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeec-----cCCCeEEEEeecCCCChhhhhhhhhc--CCCHHHHHHH
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRY  441 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e-----~st~~vLVMEyieG~~L~d~~~l~~~--g~d~~~la~~  441 (766)
                         ..-++.+|++.+.++.     +++| .+-.++..     .....++||||++|++|.++......  +++...+...
T Consensus        55 ---~~~~~~~Ei~iL~~L~-----HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I  126 (676)
T 3qa8_A           55 ---NRERWCLEIQIMKKLN-----HPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTL  126 (676)
T ss_dssp             ---HHHHHHHHHHHHHHCC-----BTTBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHH
T ss_pred             ---HHHHHHHHHHHHHhCC-----CCCCCceeeeecccccccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHH
Confidence               0113455666555542     2332 22222211     14556999999999999987543221  2333333333


Q ss_pred             H--HHHHHHHHHhCCccccCCCCCcEEEeecCCC---cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004234          442 A--VESYLEQILSHGFFHADPHPGNIAVDDVNGG---RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (766)
Q Consensus       442 l--v~~~l~qI~~~GffHaDpHPGNILV~~~~~g---~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l  516 (766)
                      +  +...+..+|..|++|+|+||+||+++.  ++   .++|+|||++..++.....       ....++..++++++...
T Consensus       127 ~~QLl~aL~yLHs~gIVHrDLKP~NILl~~--~g~~~~vKL~DFG~a~~~~~~~~~-------~~~~gt~~Y~APE~l~~  197 (676)
T 3qa8_A          127 LSDISSALRYLHENRIIHRDLKPENIVLQP--GPQRLIHKIIDLGYAKELDQGELC-------TEFVGTLQYLAPELLEQ  197 (676)
T ss_dssp             HHHHHHHHHHHHHTTBCCCCCCSTTEEEEC--CSSSCEEEECSCCCCCBTTSCCCC-------CCCCSCCTTCSSCSSCC
T ss_pred             HHHHHHHHHHHHHCCCccCCCCHHHeEeec--CCCceeEEEccccccccccccccc-------ccccCCcccCChHHhcc
Confidence            3  234478899999999999999999985  44   3899999999887653211       11235566777777666


Q ss_pred             CCCCCCCCHHHHHHHHHHHHH
Q 004234          517 GVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       517 G~~~~~~D~~~l~~~i~~~l~  537 (766)
                      +..++..|++++...+.+++.
T Consensus       198 ~~~s~ksDIwSLGviLyeLlt  218 (676)
T 3qa8_A          198 KKYTVTVDYWSFGTLAFECIT  218 (676)
T ss_dssp             SCCSTTHHHHHHHHHHHHHHS
T ss_pred             CCCCchhHHHHHHHHHHHHHH
Confidence            666778899999988877764

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.37  E-value=7.6e-13  Score=145.62  Aligned_cols=181  Identities=19%  Similarity=0.199  Sum_probs=113.5

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||.|++|.||+|++ .+..||+|.....-...                                              
T Consensus        46 ~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~~----------------------------------------------   79 (394)
T 4e7w_A           46 KVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFK----------------------------------------------   79 (394)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEEECCTTSC----------------------------------------------
T ss_pred             EEEeeCCCeEEEEEEECCCCeEEEEEEecCcchH----------------------------------------------
Confidence            6899999999999999 56668988763321000                                              


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCC-----CeEEEEeecCCCChhhhhhhh--hcCCCHHHHHHHHHH--HHHH
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTT-----PQILTMEYVPGIKINRIQSLD--ELGVDRKRLGRYAVE--SYLE  448 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st-----~~vLVMEyieG~~L~d~~~l~--~~g~d~~~la~~lv~--~~l~  448 (766)
                      .+|.+.+..+    .+..-+.+-.++.....     ..++||||++|..+..+....  ...++...+...+.+  ..+.
T Consensus        80 ~~E~~il~~l----~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~  155 (394)
T 4e7w_A           80 NRELQIMRIV----KHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLA  155 (394)
T ss_dssp             CHHHHHHHTC----CCTTBCCEEEEEEEESSSSSCEEEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC----CCCCcceEEEEEEecCCCCCceEEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence            0233333222    22222233333322111     157999999986554433221  223444443333322  3478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTA  527 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~  527 (766)
                      .+|..|++|+|+||.||+++. .++.++|+|||++..+......       ....+++.++++++..- ...+...|+++
T Consensus       156 ~LH~~~ivHrDlkp~Nill~~-~~~~~kL~DFG~a~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~~DiwS  227 (394)
T 4e7w_A          156 YIHSIGICHRDIKPQNLLLDP-PSGVLKLIDFGSAKILIAGEPN-------VSYICSRYYRAPELIFGATNYTTNIDIWS  227 (394)
T ss_dssp             HHHHTTEECSCCSGGGEEEET-TTTEEEECCCTTCEECCTTCCC-------CSSCSCGGGCCHHHHTTCSSCCTHHHHHH
T ss_pred             HHHHCCccCCCCCHHHEEEcC-CCCcEEEeeCCCcccccCCCCC-------cccccCcCccCHHHHcCCCCCCcHHHHHH
Confidence            899999999999999999983 3789999999999877543221       01234667888887743 23566789999


Q ss_pred             HHHHHHHHHH
Q 004234          528 VRRTAQFFLN  537 (766)
Q Consensus       528 l~~~i~~~l~  537 (766)
                      +...+.+++.
T Consensus       228 lG~il~ell~  237 (394)
T 4e7w_A          228 TGCVMAELMQ  237 (394)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9988777654

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.36  E-value=6.3e-14  Score=147.72  Aligned_cols=188  Identities=15%  Similarity=0.139  Sum_probs=111.2

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||.|++|.||+|+..+ .||||+.+......                    ..      ..              .+.
T Consensus        39 ~~lg~G~~g~V~~~~~~~-~~avk~~~~~~~~~--------------------~~------~~--------------~~~   77 (319)
T 2y4i_B           39 ELIGKGRFGQVYHGRWHG-EVAIRLIDIERDNE--------------------DQ------LK--------------AFK   77 (319)
T ss_dssp             CBCCCSSSSEEEEEEESS-SEEEEECCCCSCCC--------------------CC------CC--------------CCC
T ss_pred             eEeccCCceEEEEEEEcC-eEEEEEeecCCCCH--------------------HH------HH--------------HHH
Confidence            789999999999999865 49999886432111                    00      00              111


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCcc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFF  456 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gff  456 (766)
                      +|+..+.+    +. ++++.-..-+.......+++|||++|++|.++.......++...+...+.+  ..+..+|..|++
T Consensus        78 ~e~~~l~~----l~-h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~  152 (319)
T 2y4i_B           78 REVMAYRQ----TR-HENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGIL  152 (319)
T ss_dssp             TTGGGGTT----CC-CTTBCCCCEEEECSSCEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhc----CC-CCCEeEEEEEEecCCceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            22222222    22 233222222223345679999999999999876443333555544444433  347889999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc---------CCCCCCCCHHH
Q 004234          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM---------GVLVPTGDTTA  527 (766)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l---------G~~~~~~D~~~  527 (766)
                      |+|+||.||+++   ++.++|+|||++........... ........+...++++++...         +..++..|+++
T Consensus       153 H~dlkp~NIl~~---~~~~~l~Dfg~~~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~s  228 (319)
T 2y4i_B          153 HKDLKSKNVFYD---NGKVVITDFGLFSISGVLQAGRR-EDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFA  228 (319)
T ss_dssp             CCCCCSTTEEEC-----CCEECCCSCCC-----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHH
T ss_pred             ccCCChhhEEEe---CCCEEEeecCCcccccccccccc-ccccccCCCcccccChHHhhhccccccccccCCCchhhHHH
Confidence            999999999996   67999999999876532211100 000011224566778887753         22345578888


Q ss_pred             HHHHHHHHH
Q 004234          528 VRRTAQFFL  536 (766)
Q Consensus       528 l~~~i~~~l  536 (766)
                      +...+.+++
T Consensus       229 lG~il~el~  237 (319)
T 2y4i_B          229 LGTIWYELH  237 (319)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887766654

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.33  E-value=3.7e-13  Score=149.13  Aligned_cols=116  Identities=10%  Similarity=0.044  Sum_probs=75.4

Q ss_pred             CeEEEEeecCCCChhhhhh-hhh-----cCCCHHHHHHH--HHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEee
Q 004234          409 PQILTMEYVPGIKINRIQS-LDE-----LGVDRKRLGRY--AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDF  480 (766)
Q Consensus       409 ~~vLVMEyieG~~L~d~~~-l~~-----~g~d~~~la~~--lv~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDF  480 (766)
                      ..+++|++. +++|.++.. +..     ..++.......  -+...+..+|..|++|+|+||.|||++.  ++.++|+||
T Consensus       179 ~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrDiKp~NILl~~--~~~~kL~DF  255 (413)
T 3dzo_A          179 SRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQ--RGGVFLTGF  255 (413)
T ss_dssp             SEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECT--TCCEEECCG
T ss_pred             ceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcccceEEEec--CCeEEEEec
Confidence            346777765 467777542 110     00111122222  1223478899999999999999999986  889999999


Q ss_pred             cceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH----------cCCCCCCCCHHHHHHHHHHHHH
Q 004234          481 GMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ----------MGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       481 Glv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~----------lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      |++...+...         ....+ +.++++++..          ....++..|++++...+.+++.
T Consensus       256 G~a~~~~~~~---------~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~ellt  312 (413)
T 3dzo_A          256 EHLVRDGASA---------VSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWC  312 (413)
T ss_dssp             GGCEETTEEE---------CCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHH
T ss_pred             cceeecCCcc---------ccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHH
Confidence            9998876541         11234 6778888773          2223446799999887776653

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.21  E-value=8.3e-11  Score=119.56  Aligned_cols=87  Identities=21%  Similarity=0.183  Sum_probs=60.6

Q ss_pred             CChhhhhhccCccccc-ccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHH
Q 004234          287 APLDDVFERFDVEPIA-AASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIY  364 (766)
Q Consensus       287 ~~~eeiF~~fd~~PIg-saSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~  364 (766)
                      ..+.+.+..++.+|++ .|+.++||+... +|+.++||+.++....                                  
T Consensus        13 ~~l~~~~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~~~----------------------------------   58 (264)
T 1nd4_A           13 AAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALN----------------------------------   58 (264)
T ss_dssp             GGGTTTTTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCTTS----------------------------------
T ss_pred             HHHHHhcCCCceEecccCCCCceEEEEecCCCCeEEEEeCCcccch----------------------------------
Confidence            3445555666667887 666799999988 5889999997543110                                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC--CCeEEEEeecCCCChh
Q 004234          365 DECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKIN  423 (766)
Q Consensus       365 ~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s--t~~vLVMEyieG~~L~  423 (766)
                                 ++..|++.+..+++.     .+.+|+++....  +..+++|||++|.++.
T Consensus        59 -----------~~~~E~~~l~~l~~~-----~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~  103 (264)
T 1nd4_A           59 -----------ELQDEAARLSWLATT-----GVPCAAVLDVVTEAGRDWLLLGEVPGQDLL  103 (264)
T ss_dssp             -----------CHHHHHHHHHHHHTT-----TCCBCCEEEEEECSSCEEEEEECCSSEETT
T ss_pred             -----------hhhHHHHHHHHHHhC-----CCCCCeEEEeccCCCCCEEEEEecCCcccC
Confidence                       345566666666531     467888876433  3569999999999885

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.09  E-value=6.8e-10  Score=114.18  Aligned_cols=135  Identities=19%  Similarity=0.150  Sum_probs=90.7

Q ss_pred             cccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ  379 (766)
Q Consensus       300 PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~  379 (766)
                      ..+.+|.++||++...|+.+++|+.+++....                                          .-++.+
T Consensus        21 ~~~g~s~~~v~~~~~~~~~~vlK~~~~~~~~~------------------------------------------~~~~~~   58 (263)
T 3tm0_A           21 DTEGMSPAKVYKLVGENENLYLKMTDSRYKGT------------------------------------------TYDVER   58 (263)
T ss_dssp             CCSCCSSSEEEEEECSSCEEEEEEECGGGTTS------------------------------------------TTCHHH
T ss_pred             eccCCCCCeEEEEECCCCcEEEEeCCcccCCC------------------------------------------HHHHHH
Confidence            46678889999999888999999986532111                                          014567


Q ss_pred             HHHHHHHHHHhcCCCCccccceeeecc--CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHh-----
Q 004234          380 EAANAELFASNFKDMDYVKVPTIFWEY--TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS-----  452 (766)
Q Consensus       380 EA~Nl~~f~~~f~~~~~V~vP~v~~e~--st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~-----  452 (766)
                      |++.+..+.+      .+.+|+++...  .+..+++|||++|.++.+...   ...+...++..+.+ .+..+|.     
T Consensus        59 E~~~l~~l~~------~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~---~~~~~~~~~~~l~~-~l~~LH~~~~~~  128 (263)
T 3tm0_A           59 EKDMMLWLEG------KLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYE---DEQSPEKIIELYAE-CIRLFHSIDISD  128 (263)
T ss_dssp             HHHHHHHHTT------TSCCCCEEEEEEETTEEEEEEECCSSEEHHHHCC---TTTCHHHHHHHHHH-HHHHHHHSCCTT
T ss_pred             HHHHHHHHhc------CCCCCeEEEEEecCCceEEEEEecCCeehhhccC---CcccHHHHHHHHHH-HHHHHhCCCccc
Confidence            7777777643      36788888533  345789999999999876411   01223333333322 2334443     


Q ss_pred             ------------------------------------------------------CCccccCCCCCcEEEeecCCCcEEEE
Q 004234          453 ------------------------------------------------------HGFFHADPHPGNIAVDDVNGGRLIFY  478 (766)
Q Consensus       453 ------------------------------------------------------~GffHaDpHPGNILV~~~~~g~l~Li  478 (766)
                                                                            .+++|+|+||+||++++  ++.+.++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~--~~~~~lI  206 (263)
T 3tm0_A          129 CPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKD--GKVSGFI  206 (263)
T ss_dssp             CSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEET--TEEEEEC
T ss_pred             CCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEEC--CcEEEEE
Confidence                                                                  45899999999999973  3345699


Q ss_pred             eecceeccCh
Q 004234          479 DFGMMGSISP  488 (766)
Q Consensus       479 DFGlv~~L~~  488 (766)
                      ||+.++.-++
T Consensus       207 Dwe~a~~gd~  216 (263)
T 3tm0_A          207 DLGRSGRADK  216 (263)
T ss_dssp             CCTTCEEEEH
T ss_pred             EchhcccCCH
Confidence            9999987655

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.91  E-value=4.4e-09  Score=113.65  Aligned_cols=105  Identities=13%  Similarity=0.140  Sum_probs=69.3

Q ss_pred             CCCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEeecCeeEEEEEec--CCccchHHHHHHHHHHHHHHHh
Q 004234          270 PPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQR--PGLKDLFDIDLKNLRVIAEYLQ  347 (766)
Q Consensus       270 pp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqr--P~i~~~i~~Dl~il~~la~~l~  347 (766)
                      ++++.+.+.+.+.+.++.. .   ...+.++++.|..+.||+....+..+++|+.+  |+....                
T Consensus        19 ~~ld~~~l~~~l~~~~~~~-~---~~~~~~~l~~G~sn~~y~v~~~~~~~vlr~~~~p~~~~~~----------------   78 (359)
T 3dxp_A           19 QRFDTEALEAWMRQHVEGF-A---GPLSVEQFKGGQSNPTFKLVTPGQTYVMRAKPGPKSKLLP----------------   78 (359)
T ss_dssp             -CCCHHHHHHHHHHHSTTC-C---CCCEEEECCC-CCSCEEEEECSSCEEEEECCCC-----------------------
T ss_pred             cCCCHHHHHHHHHHhCCCC-C---CCceEEEcCCcccceEEEEEECCceEEEEeCCCCCCCCCC----------------
Confidence            4567777888888776421 1   12345789999999999999877889999875  442100                


Q ss_pred             hcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCC-----eEEEEeecCCCCh
Q 004234          348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTP-----QILTMEYVPGIKI  422 (766)
Q Consensus       348 ~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~-----~vLVMEyieG~~L  422 (766)
                                               ..-++.+|++.+..+.+     ..+.+|+++....+.     .+++|||++|..+
T Consensus        79 -------------------------~~~~~~~E~~~l~~L~~-----~~vpvP~~~~~~~~~~~~g~~~~vme~v~G~~l  128 (359)
T 3dxp_A           79 -------------------------SAHAIEREYRVMDALAG-----TDVPVAKMYALCEDESVIGRAFYIMEFVSGRVL  128 (359)
T ss_dssp             ----------------------------CHHHHHHHHHHHTT-----SSSCCCCEEEEECCTTTTSSCEEEEECCCCBCC
T ss_pred             -------------------------cHHHHHHHHHHHHHhhc-----CCCCCCcEEEECCCCCccCCeEEEEEecCCeec
Confidence                                     01245567777766653     357899998754433     7899999999988


Q ss_pred             hh
Q 004234          423 NR  424 (766)
Q Consensus       423 ~d  424 (766)
                      .+
T Consensus       129 ~~  130 (359)
T 3dxp_A          129 WD  130 (359)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.84  E-value=2.2e-08  Score=103.14  Aligned_cols=68  Identities=18%  Similarity=0.144  Sum_probs=41.8

Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~  527 (766)
                      .++|+|+||+||++++  ++.+.||||+.++.-++..  .++-+.......+.+.....+...|..  ..|...
T Consensus       194 ~l~HGDl~~~Nil~~~--~~~~~viDwe~a~~gdp~~--Dla~~~~~~~~~~~~~~~~fl~~Yg~~--~~d~~r  261 (272)
T 4gkh_A          194 VVTHGDFSLDNLIFDE--GKLIGCIDVGRVGIADRYQ--DLAILWNCLGEFSPSLQKRLFQKYGID--NPDMNK  261 (272)
T ss_dssp             EEECSCCCTTSEEEET--TEEEEECCCTTCEEEETHH--HHHHHHHHHTTTCHHHHHHHHHHHTCS--SCCHHH
T ss_pred             EEEcCCCCCCeEEEEC--CeEEEEEECcccccCCHHH--HHHHHHHHhhhcCHHHHHHHHHHcCCC--CCCHHH
Confidence            3799999999999974  5556799999998766532  233232223334444444444445643  335543

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.64  E-value=7e-07  Score=97.76  Aligned_cols=110  Identities=17%  Similarity=0.157  Sum_probs=62.5

Q ss_pred             CCCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHh
Q 004234          270 PPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ  347 (766)
Q Consensus       270 pp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~  347 (766)
                      -+++.+.+.+.+. .+|.-...  ..++.+++|.|..++||+++.  .|+.|+||...|..+-. ..+            
T Consensus        10 ~~l~~~~v~~~l~-~~~~~~~~--~~~~~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~-~~~------------   73 (397)
T 2olc_A           10 ETLNESSAVALAV-KLGLFPSK--STLTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVV-GES------------   73 (397)
T ss_dssp             CCCCHHHHHHHHH-HTTC-------CCEEEECCSSSSEEEEEEEC----CEEEEEEECCC--------------------
T ss_pred             ccCCHHHHHHHHH-hcCcCCCC--CceEEEECCCCceEEEEEEEECCCCcEEEEEecchhhccc-CCC------------
Confidence            3455566666655 44421100  124567999999999999976  47899999987754200 000            


Q ss_pred             hcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCC
Q 004234          348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIK  421 (766)
Q Consensus       348 ~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~  421 (766)
                        .+      ....              .+..|++.+..+.+.    ....+|++|..-....+++|||++|..
T Consensus        74 --~~------~~~~--------------r~~~E~~~L~~l~~~----~~~~vP~~~~~d~~~~~lvmE~l~g~~  121 (397)
T 2olc_A           74 --WP------LTID--------------RARIESSALIRQGEH----VPHLVPRVFYSDTEMAVTVMEDLSHLK  121 (397)
T ss_dssp             --CC------CCTT--------------HHHHHHHHHHHHHTT----CGGGSCCEEEEETTTTEEEECCCTTSE
T ss_pred             --Cc------CcHH--------------HHHHHHHHHHHhhhh----CCCCcCeEEEEcCCccEEEEEeCCCcc
Confidence              00      0000              123455555555432    235789988654556799999999853

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.58  E-value=1.9e-07  Score=98.55  Aligned_cols=98  Identities=7%  Similarity=0.095  Sum_probs=64.8

Q ss_pred             CCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcC
Q 004234          271 PFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKID  350 (766)
Q Consensus       271 p~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~  350 (766)
                      .++.+.+++.|.+.+..     +.....++++.|....||+..   +.+++|+.+++  .                    
T Consensus         3 ~~~~~~l~~~l~~~~p~-----~~~~~i~~~~~G~~n~v~~v~---~~~vlR~~~~~--~--------------------   52 (304)
T 3sg8_A            3 TYTFDQVEKAIEQLYPD-----FTINTIEISGEGNDCIAYEIN---RDFIFKFPKHS--R--------------------   52 (304)
T ss_dssp             CCCHHHHHHHHHHHCTT-----CCCCCCCEEEECSSEEEEEST---TSEEEEEESSH--H--------------------
T ss_pred             cCCHHHHHHHHHHhCCC-----ccceeeEecCCCCcceEEEEC---CEEEEEecCCc--c--------------------
Confidence            45667778888877642     112234679999999999875   67999986432  0                    


Q ss_pred             CCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCC-----CeEEEEeecCCCChhh
Q 004234          351 PKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTT-----PQILTMEYVPGIKINR  424 (766)
Q Consensus       351 p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st-----~~vLVMEyieG~~L~d  424 (766)
                                            ..-++..|++.+..+..    ...+.+|+++.....     ..+++|||++|.++.+
T Consensus        53 ----------------------~~~~~~~E~~~l~~l~~----~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G~~l~~  105 (304)
T 3sg8_A           53 ----------------------GSTNLFNEVNILKRIHN----KLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPLTP  105 (304)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHTT----SSSSCCCCEEEECCCCSSCSCSCEEEECCCCEECCH
T ss_pred             ----------------------hHHHHHHHHHHHHHHHh----cCCCCCCceEeecCCCCCCCcceEEEcccCCeECCc
Confidence                                  01134566666666543    345778988865332     3488999999998875

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=98.48  E-value=4e-07  Score=95.37  Aligned_cols=96  Identities=19%  Similarity=0.146  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCC
Q 004234          275 ETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKS  353 (766)
Q Consensus       275 ~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~  353 (766)
                      +.+.+.+.+.+|.++..+      +++|.|..++||+.++ +|++|+||+..++....                      
T Consensus         3 ~~v~a~~~~l~G~~v~~v------~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~----------------------   54 (288)
T 3f7w_A            3 NSVAARVTELTGREVAAV------AERGHSHRWHLYRVELADGTPLFVKALPDDAPAL----------------------   54 (288)
T ss_dssp             HHHHHHHHHHHCCCEEEE------EEEEEETTEEEEEEEETTSCEEEEEECCTTCCCC----------------------
T ss_pred             HHHHHHHHHhcCCCeEEE------EecCCCCCeEEEEEEECCCCEEEEEEeCCCCcch----------------------
Confidence            456778888889776443      7899999999999999 89999999875542211                      


Q ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhh
Q 004234          354 DGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINR  424 (766)
Q Consensus       354 ~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d  424 (766)
                                          .-.|..|++.++.+++    ...|.+|+++..  +..+++|||+++.....
T Consensus        55 --------------------~~~~~~Ea~~L~~L~~----~~~vpvP~v~~~--~~~~lv~e~l~~~~~~~   99 (288)
T 3f7w_A           55 --------------------DGLFRAEALGLDWLGR----SFGSPVPQVAGW--DDRTLAMEWVDERPPTP   99 (288)
T ss_dssp             --------------------TTHHHHHHHHHHHHTC----STTCCSCCEEEE--ETTEEEEECCCCCCCCH
T ss_pred             --------------------hhHHHHHHHHHHHHHh----hCCCCcceEEec--cCceEEEEeecccCCCh
Confidence                                0024567777776643    245889999963  56799999999876553

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=98.37  E-value=2.9e-06  Score=89.65  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=29.9

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (766)
                      ..+++|+|+||+||+++.  ++.+.++||+.++.-++
T Consensus       221 ~~~l~HgD~~~~Nil~~~--~~~~~lIDfe~a~~g~~  255 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGE--NEQIWVIDLDTVSFDLP  255 (346)
T ss_dssp             SCCEECSSCSTTSEEECG--GGCEEECCCTTCEECCT
T ss_pred             cCceecCCCCcccEEEeC--CCcEEEEehhhcccCCh
Confidence            468999999999999975  67899999999876544

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.35  E-value=1.4e-06  Score=93.66  Aligned_cols=83  Identities=16%  Similarity=0.214  Sum_probs=56.2

Q ss_pred             ccc-cccceeEEEEEeec--------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          299 EPI-AAASLGQVHRARLK--------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       299 ~PI-gsaSiGQVhrA~l~--------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      +++ +.|....+|+....        |+.+++|+..|+....                 ...                  
T Consensus        26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~-----------------~~~------------------   70 (357)
T 3ats_A           26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVP-----------------VFP------------------   70 (357)
T ss_dssp             EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCC-----------------SSS------------------
T ss_pred             EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccc-----------------cCc------------------
Confidence            678 89999999998875        7899999876542100                 000                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC-----CCeEEEEeecCCCChhh
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT-----TPQILTMEYVPGIKINR  424 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s-----t~~vLVMEyieG~~L~d  424 (766)
                          .-++..|++.+..+++.    ..+.+|+++....     +..+++|||++|.++.+
T Consensus        71 ----~~~~~~E~~~l~~L~~~----~~vpvP~v~~~~~~~~~~g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A           71 ----TYRLDHQFEVIRLVGEL----TDVPVPRVRWIETTGDVLGTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             ----CCCHHHHHHHHHHHHHH----CCSCCCCEEEEECSSTTTSSCEEEEECCCCBCCCB
T ss_pred             ----hhHHHHHHHHHHHHhhc----CCCCCCcEEEEccCCCccCCceEEEEecCCCChhh
Confidence                01345667777776654    2478999986433     23589999999987653

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.32  E-value=1.1e-06  Score=93.45  Aligned_cols=76  Identities=12%  Similarity=0.104  Sum_probs=52.9

Q ss_pred             cccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .++++.|...+||+.   |+.++||+.++.   .                                         ..-++
T Consensus        24 v~~l~~G~~n~v~~v---g~~~VlR~~~~~---~-----------------------------------------~~~~~   56 (306)
T 3tdw_A           24 VESLGEGFRNYAILV---NGDWVFRFPKSQ---Q-----------------------------------------GADEL   56 (306)
T ss_dssp             EEEEEECSSEEEEEE---TTTEEEEEESSH---H-----------------------------------------HHHHH
T ss_pred             eeecCCCcceeEEEE---CCEEEEEecCCc---h-----------------------------------------HHHHH
Confidence            367889999999988   788999985211   0                                         01145


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeecc---CCCeEEEEeecCCCChhh
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEY---TTPQILTMEYVPGIKINR  424 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~---st~~vLVMEyieG~~L~d  424 (766)
                      ..|++.+..+++.    ..+.+|+++...   .+..+++|||++|.++.+
T Consensus        57 ~~E~~~L~~L~~~----~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~l~~  102 (306)
T 3tdw_A           57 NKEIQLLPLLVGC----VKVNIPQYVYIGKRSDGNPFVGYRKVQGQILGE  102 (306)
T ss_dssp             HHHHHHHHHHTTT----CSSBCCCEEEEEECTTSCEEEEEECCCSEECHH
T ss_pred             HHHHHHHHHHHhc----CCCCCCCeEeecccCCCceEEEEeccCCeECch
Confidence            6677777776542    247788877532   345789999999998875

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=98.29  E-value=2.3e-06  Score=91.87  Aligned_cols=98  Identities=16%  Similarity=0.196  Sum_probs=70.7

Q ss_pred             ChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCC
Q 004234          273 PSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPK  352 (766)
Q Consensus       273 p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~  352 (766)
                      .++.+.+.+.+.+|.+.    .-.+.+|++.|.+.++|+...++..++||+..++-.                       
T Consensus        20 ~~~~l~~~L~~~lg~~~----~i~~~~~l~gG~~n~~y~v~~~~~~~vlK~~~~~~~-----------------------   72 (312)
T 3jr1_A           20 MWKSISQVLAEQFGAYY----FIKHKEKLYSGEMNEIWLINDEVQTVFVKINERSYR-----------------------   72 (312)
T ss_dssp             HHHHHHHHHHHHHSSCC----CCCEEEEECCSSSSEEEEEESSSCEEEEEEEEGGGH-----------------------
T ss_pred             cHHHHHHHHHHHhCCCc----ceeeeEEeCCccceeeeEEEECCCeEEEEeCCcccH-----------------------
Confidence            45677788888888541    122347999999999999998888999998754210                       


Q ss_pred             CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeec--cCCCeEEEEeecCCCChh
Q 004234          353 SDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKIN  423 (766)
Q Consensus       353 ~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e--~st~~vLVMEyieG~~L~  423 (766)
                                            -.|..|++.+..++..    ..+.||+++..  ..+..+++|||++|.+++
T Consensus        73 ----------------------~~~~~E~~~L~~L~~~----~~v~VP~vl~~~~~~g~~~lvme~l~G~~~~  119 (312)
T 3jr1_A           73 ----------------------SMFRAEADQLALLAKT----NSINVPLVYGIGNSQGHSFLLLEALNKSKNK  119 (312)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHT----TSSBCCCEEEEEECSSEEEEEEECCCCCCCC
T ss_pred             ----------------------HHHHHHHHHHHHHHhh----CCCCcceEEEEeecCCceEEEEEeccCCCCC
Confidence                                  1345677777777652    24788998853  335689999999998764

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=98.29  E-value=3.2e-06  Score=89.40  Aligned_cols=161  Identities=9%  Similarity=0.078  Sum_probs=90.0

Q ss_pred             CCCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhc
Q 004234          270 PPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKI  349 (766)
Q Consensus       270 pp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~  349 (766)
                      ++++.+++.+++++ +|.  +++   .+.+|++.|...+||+...++..+++|+.+++....                  
T Consensus         5 ~~~~~~~l~~~l~~-~~~--~~~---~~~~~i~~G~~n~~~~v~~~~g~~vlk~~~~~~~~~------------------   60 (322)
T 2ppq_A            5 TDITEDELRNFLTQ-YDV--GSL---TSYKGIAEGVENSNFLLHTTKDPLILTLYEKRVEKN------------------   60 (322)
T ss_dssp             CCCCHHHHHHHHTT-BCC--CCE---EEEEEECC---EEEEEEEESSCCEEEEEECC---CC------------------
T ss_pred             ccCCHHHHHHHHHh-CCC--Ccc---eEeeccCCCcccceEEEEeCCccEEEEEeCCCCCHH------------------
Confidence            45677777777764 553  111   234689999999999998855579999886631100                  


Q ss_pred             CCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeecc--------CCCeEEEEeecCCCC
Q 004234          350 DPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY--------TTPQILTMEYVPGIK  421 (766)
Q Consensus       350 ~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~--------st~~vLVMEyieG~~  421 (766)
                                                ++..|.+.+..+++.     .+.+|+++...        .+..+++|+|++|.+
T Consensus        61 --------------------------~l~~e~~~l~~L~~~-----g~~vP~~~~~~~g~~~~~~~g~~~~l~~~l~G~~  109 (322)
T 2ppq_A           61 --------------------------DLPFFLGLMQHLAAK-----GLSCPLPLPRKDGELLGELSGRPAALISFLEGMW  109 (322)
T ss_dssp             --------------------------HHHHHHHHHHHHHHT-----TCCCCCBCCBTTCCSCEEETTEEEEEEECCCCBC
T ss_pred             --------------------------HHHHHHHHHHHHHHC-----CCCCCcccCCCCCCEEEEECCEEEEEEEeCCCcC
Confidence                                      122344444444442     35678877532        345689999999987


Q ss_pred             hhhh-----hh-------hhh--cCC--------CHHHHHH-----------------HHHHHHHHHHH-------hCCc
Q 004234          422 INRI-----QS-------LDE--LGV--------DRKRLGR-----------------YAVESYLEQIL-------SHGF  455 (766)
Q Consensus       422 L~d~-----~~-------l~~--~g~--------d~~~la~-----------------~lv~~~l~qI~-------~~Gf  455 (766)
                      +...     ..       +..  .++        .......                 ..+...+..+.       ..++
T Consensus       110 ~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~l  189 (322)
T 2ppq_A          110 LRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPKDLPAGV  189 (322)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHCCCSSCEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCcccCCccc
Confidence            5421     00       000  000        0000000                 00111122221       3579


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccC
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS  487 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~  487 (766)
                      +|+|+||+||++++  ++.+.+|||+.+..-+
T Consensus       190 iHgDl~~~Nil~~~--~~~~~lIDf~~a~~g~  219 (322)
T 2ppq_A          190 IHADLFQDNVFFLG--DELSGLIDFYFACNDL  219 (322)
T ss_dssp             ECSCCCGGGEEEET--TEEEEECCCTTCEEEE
T ss_pred             CCCCCCccCEEEeC--CceEEEecchhccCch
Confidence            99999999999974  4344799999887643

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=98.07  E-value=1.3e-05  Score=88.65  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=29.8

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (766)
                      ..+++|+|+||+||++++  ++ ++++||+.+..=++.
T Consensus       231 ~~~liHGDl~~~Nil~~~--~~-~~lID~e~a~~G~p~  265 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQ--DS-TQVIDPEFSFYGPMG  265 (420)
T ss_dssp             CCEEECSCCSGGGEEECS--SC-EEECCCTTCEEECHH
T ss_pred             CCeEEecCCCCCcEEEeC--CC-CEEEeCcccccCchH
Confidence            568999999999999974  44 999999999877654

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=98.03  E-value=3e-05  Score=83.56  Aligned_cols=54  Identities=9%  Similarity=0.122  Sum_probs=40.9

Q ss_pred             CCCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEeecCeeEEEEEecCC
Q 004234          270 PPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPG  327 (766)
Q Consensus       270 pp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~  327 (766)
                      |+++.+++.+.+.+.+|....    .+...+.|.|+...||+...++..+++|+.++.
T Consensus         4 p~l~~~~l~~~l~~~ygl~~~----~~~~l~~G~g~~N~vy~v~~~~g~~vLK~~~~~   57 (339)
T 3i1a_A            4 QPIQAQQLIELLKVHYGIDIH----TAQFIQGGADTNAFAYQADSESKSYFIKLKYGY   57 (339)
T ss_dssp             CSSCTTHHHHHHHHHHCCCCS----EEEEETTTSCSSCEEEEEECSSCEEEEEEEECS
T ss_pred             CCCCHHHHHHHHHHHcCCCcc----eeEEeeccCccccceEEEEeCCCCEEEEEecCc
Confidence            678888899999988887543    334456677779999999984339999988654

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=98.02  E-value=3e-05  Score=82.11  Aligned_cols=52  Identities=21%  Similarity=0.281  Sum_probs=37.2

Q ss_pred             CCCCChHHHHHHHHHHhCCChhhhhhccCcccccccceeEEEEEee-cCeeEEEEEecCC
Q 004234          269 VPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPG  327 (766)
Q Consensus       269 vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~  327 (766)
                      .++++.+.+...+ +.+|...+     -..+|++ |....||+... +|+.+++|+.+|+
T Consensus         8 ~~~l~~~~i~~~l-~~~g~~~~-----~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~   60 (328)
T 1zyl_A            8 FQTLHPDTIMDAL-FEHGIRVD-----SGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPE   60 (328)
T ss_dssp             CCCCCHHHHHHHH-HHTTCCCC-----SCCEEEC-CSSSEEEEECCTTCCCEEEEEECTT
T ss_pred             CCCCCHHHHHHHH-HHcCCCCC-----ceEEeec-CcccceEEEEcCCCCEEEEEEcCCC
Confidence            4556677788887 45664432     1235777 88899999887 6888999998775

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.93  E-value=3.2e-05  Score=81.33  Aligned_cols=136  Identities=17%  Similarity=0.213  Sum_probs=83.2

Q ss_pred             cccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       298 ~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      .+|++.|...++|+.    +.+++|+..++....                                           +|.
T Consensus        23 i~~l~gG~tN~~~~~----~~~vlR~~~~~~~~~-------------------------------------------~~r   55 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA----GDLCLRIPGKGTEEY-------------------------------------------INR   55 (301)
T ss_dssp             CEEEESCSSEEEEEE----TTEEEEEECC----C-------------------------------------------CCH
T ss_pred             eeEcCCcccccccee----eeEEEECCCCCccce-------------------------------------------eCH
Confidence            578999999999999    679999886642211                                           133


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeec-CCCChhhhh--h--------------hhhcCC------C
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYV-PGIKINRIQ--S--------------LDELGV------D  434 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyi-eG~~L~d~~--~--------------l~~~g~------d  434 (766)
                      .+|++++..+.+.     .+. |+++.......+++|||+ +|.++....  .              +...+.      +
T Consensus        56 ~~E~~~l~~l~~~-----g~~-P~~~~~~~~~~~~v~e~i~~g~~l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~  129 (301)
T 3dxq_A           56 ANEAVAAREAAKA-----GVS-PEVLHVDPATGVMVTRYIAGAQTMSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFE  129 (301)
T ss_dssp             HHHHHHHHHHHHT-----TSS-CCEEEECTTTCCEEEECCTTCEECCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCC
T ss_pred             HHHHHHHHHHHHc-----CCC-CceEEEECCCCEEEEeecCCCccCCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence            4577777776652     344 888876666689999999 887775311  0              000010      1


Q ss_pred             HH-HHH--------------------HHHHHHHHHHHH----hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004234          435 RK-RLG--------------------RYAVESYLEQIL----SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (766)
Q Consensus       435 ~~-~la--------------------~~lv~~~l~qI~----~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (766)
                      .. .+.                    ...+......+.    ...+.|+|+||+||+..   ++++.+|||..++.-++.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~HgDl~~~Nil~~---~~~~~lID~e~a~~g~~~  206 (301)
T 3dxq_A          130 LFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHPLPLAACHCDPLCENFLDT---GERMWIVDWEYSGMNDPL  206 (301)
T ss_dssp             HHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSCCCCEEECSCCCGGGEEEC---SSCEEECCCTTCEEECTH
T ss_pred             HHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcCCCceeeccCCCcCCEEEC---CCCEEEEecccccCCCHH
Confidence            10 000                    000111111111    23589999999999943   678999999988866553

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.84  E-value=5.7e-05  Score=80.38  Aligned_cols=37  Identities=22%  Similarity=0.056  Sum_probs=29.4

Q ss_pred             CCccccCCCCCcEEEeecC--CCcEEEEeecceeccChh
Q 004234          453 HGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPN  489 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~--~g~l~LiDFGlv~~L~~~  489 (766)
                      .+++|+|+||+||++++..  .+.+.++||+.+..=++.
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~~~  221 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGHRA  221 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEECTT
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCCCH
Confidence            5799999999999997411  167999999998876553

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=97.74  E-value=0.00013  Score=78.82  Aligned_cols=76  Identities=14%  Similarity=0.204  Sum_probs=49.2

Q ss_pred             cCcccccccceeEEEEEeecC----------eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004234          296 FDVEPIAAASLGQVHRARLKG----------EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (766)
Q Consensus       296 fd~~PIgsaSiGQVhrA~l~G----------~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (766)
                      +..+|++.|....+|+....+          +.+++|+-.++....                                  
T Consensus        36 ~~~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~----------------------------------   81 (369)
T 3c5i_A           36 LRVKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDEL----------------------------------   81 (369)
T ss_dssp             EEEEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGT----------------------------------
T ss_pred             eEEEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccce----------------------------------
Confidence            455789999999999998843          789999876643211                                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCCh
Q 004234          366 ECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKI  422 (766)
Q Consensus       366 E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L  422 (766)
                               .|...|++.+..+.+.     .+ +|+++...  ..+++|||++|.++
T Consensus        82 ---------~~~~~E~~~l~~L~~~-----g~-~P~~~~~~--~~~~v~e~i~G~~l  121 (369)
T 3c5i_A           82 ---------YNTISEFEVYKTMSKY-----KI-APQLLNTF--NGGRIEEWLYGDPL  121 (369)
T ss_dssp             ---------SCHHHHHHHHHHHHHT-----TS-SCCEEEEE--TTEEEEECCCSEEC
T ss_pred             ---------ecHHHHHHHHHHHHhc-----CC-CCceEEec--CCcEEEEEecCCcC
Confidence                     0224566666666542     34 78888643  45899999999765

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=97.58  E-value=0.0002  Score=79.78  Aligned_cols=51  Identities=20%  Similarity=0.226  Sum_probs=34.8

Q ss_pred             HHHHHHHHHhCCChhhhh-hccCcccccccceeEEEEEeec---------CeeEEEEEecC
Q 004234          276 TAVSIVEEELGAPLDDVF-ERFDVEPIAAASLGQVHRARLK---------GEEVVVKVQRP  326 (766)
Q Consensus       276 ~v~~iie~elG~~~eeiF-~~fd~~PIgsaSiGQVhrA~l~---------G~~VAVKVqrP  326 (766)
                      .+++++.+-++..|..+- ..++.++++.|-...||+....         ++.|++|+-++
T Consensus        55 ~a~~l~~~~l~~~w~~~~~~~~~v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~  115 (429)
T 1nw1_A           55 RAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFN  115 (429)
T ss_dssp             HHHHHHHHHHCTHHHHCCGGGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECS
T ss_pred             HHHHHHHHhccCCcCCCCccceEEEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCC
Confidence            345556655665555331 2345578999999999999873         47899998743

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=97.57  E-value=0.00026  Score=77.88  Aligned_cols=162  Identities=20%  Similarity=0.269  Sum_probs=92.5

Q ss_pred             HHHHHHHHHhCCChhhh-hhccCcccccccceeEEEEEeec---------CeeEEEEEecCCccchHHHHHHHHHHHHHH
Q 004234          276 TAVSIVEEELGAPLDDV-FERFDVEPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEY  345 (766)
Q Consensus       276 ~v~~iie~elG~~~eei-F~~fd~~PIgsaSiGQVhrA~l~---------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~  345 (766)
                      .+..++.+-++..|..+ -..++.+++..|--.++|+....         ++.|++|+..+....               
T Consensus        32 ~~~~~~~~~l~~~W~~~~~~~l~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~---------------   96 (379)
T 3feg_A           32 RAYQWCREYLGGAWRRVQPEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQG---------------   96 (379)
T ss_dssp             HHHHHHHHHHCGGGGGCCGGGCCCEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CC---------------
T ss_pred             HHHHHHHHHccCcCCCCCcCceEEEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccch---------------
Confidence            44556666666666654 24567789999999999999872         478999985221100               


Q ss_pred             HhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhh
Q 004234          346 LQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRI  425 (766)
Q Consensus       346 l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~  425 (766)
                                                  -.+..+|++++..+.+.     .+ .|+++....+  -++|||++|.++..-
T Consensus        97 ----------------------------~~~~~rE~~vl~~L~~~-----gv-~P~ll~~~~~--g~v~e~i~G~~l~~~  140 (379)
T 3feg_A           97 ----------------------------VDSLVLESVMFAILAER-----SL-GPQLYGVFPE--GRLEQYIPSRPLKTQ  140 (379)
T ss_dssp             ----------------------------HHHHHHHHHHHHHHHHT-----TS-SCCEEEEETT--EEEEECCSEEECCGG
T ss_pred             ----------------------------HHHHHHHHHHHHHHHhc-----CC-CCeEEEEcCC--ccEEEEecCccCChh
Confidence                                        01445788888877652     23 4888865443  499999999877531


Q ss_pred             h--h-------------hhhc----C--CC-H-HHHHHHH---------------------HH---HHHHHHH-----hC
Q 004234          426 Q--S-------------LDEL----G--VD-R-KRLGRYA---------------------VE---SYLEQIL-----SH  453 (766)
Q Consensus       426 ~--~-------------l~~~----g--~d-~-~~la~~l---------------------v~---~~l~qI~-----~~  453 (766)
                      .  .             +-..    +  .. . .++....                     +.   ..+...+     ..
T Consensus       141 ~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~L~~~~~~~  220 (379)
T 3feg_A          141 ELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPV  220 (379)
T ss_dssp             GGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHHHHHHTSCCCE
T ss_pred             HhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHhhcCCCc
Confidence            1  0             0000    0  01 0 1111110                     00   0111222     23


Q ss_pred             CccccCCCCCcEEEeec--CCCcEEEEeecceeccCh
Q 004234          454 GFFHADPHPGNIAVDDV--NGGRLIFYDFGMMGSISP  488 (766)
Q Consensus       454 GffHaDpHPGNILV~~~--~~g~l~LiDFGlv~~L~~  488 (766)
                      .+.|+|+|++||++++.  +++.+.+|||-.++.-++
T Consensus       221 ~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~~~~  257 (379)
T 3feg_A          221 VFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYNYR  257 (379)
T ss_dssp             EEECSCCCGGGEEEESCC---CCEEECCCTTCEEEEH
T ss_pred             EEEcCCCCCCeEEEcCCCCccCcEEEEecccCCcCCh
Confidence            68999999999999851  126899999999987654

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=97.02  E-value=0.0048  Score=68.81  Aligned_cols=98  Identities=12%  Similarity=0.249  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHhCCChhhhh-hccCcccccccceeEEEEEeec---------CeeEEEEEecCCccchHHHHHHHHHHHH
Q 004234          274 SETAVSIVEEELGAPLDDVF-ERFDVEPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIA  343 (766)
Q Consensus       274 ~~~v~~iie~elG~~~eeiF-~~fd~~PIgsaSiGQVhrA~l~---------G~~VAVKVqrP~i~~~i~~Dl~il~~la  343 (766)
                      .+.+..++.+.+.. |..+- ..++.+++..|-...+|+....         ++.+++|+..++....            
T Consensus        51 ~~~l~~l~~~~~p~-w~~~~~~~~~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~------------  117 (424)
T 3mes_A           51 TEIIIGICRKNIPG-WKEINESYIEVKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKF------------  117 (424)
T ss_dssp             HHHHHHHHHHHSTT-CTTCCGGGEEEEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CC------------
T ss_pred             HHHHHHHHHHHcCc-cccCCCCceEEEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchh------------
Confidence            34455555554442 33210 2345678999999999999984         6889999875543211            


Q ss_pred             HHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChh
Q 004234          344 EYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKIN  423 (766)
Q Consensus       344 ~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~  423 (766)
                                                     +|-.+|.+++..+...     .+ .|+++...  ..+++|||++|.+++
T Consensus       118 -------------------------------idR~~E~~~l~~L~~~-----gi-~P~l~~~~--~~~~I~efI~G~~l~  158 (424)
T 3mes_A          118 -------------------------------YDSKVELDVFRYLSNI-----NI-APNIIADF--PEGRIEEFIDGEPLT  158 (424)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHT-----TS-SCCEEEEE--TTEEEEECCCSEECC
T ss_pred             -------------------------------cCHHHHHHHHHHHHhc-----CC-CCCEEEEc--CCCEEEEEeCCccCC
Confidence                                           1345677777777652     24 68888533  458999999998754

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=96.98  E-value=0.0026  Score=71.59  Aligned_cols=77  Identities=10%  Similarity=0.226  Sum_probs=50.4

Q ss_pred             cCcccccccceeEEEEEeecC--eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          296 FDVEPIAAASLGQVHRARLKG--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       296 fd~~PIgsaSiGQVhrA~l~G--~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      ++.++|+.|-...+|+....+  ..+++|+..++....                                          
T Consensus       111 ~~i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~------------------------------------------  148 (458)
T 2qg7_A          111 LEFQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEI------------------------------------------  148 (458)
T ss_dssp             EEEEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSC------------------------------------------
T ss_pred             eEEEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhh------------------------------------------
Confidence            445789999999999999854  899999876553221                                          


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChh
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKIN  423 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~  423 (766)
                       +|...|++.+..+.+     ..+ .|+++....  ..++|||++|.++.
T Consensus       149 -idR~~E~~vl~~L~~-----~gl-~P~ll~~~~--~G~v~e~I~G~~l~  189 (458)
T 2qg7_A          149 -INREREKKISCILYN-----KNI-AKKIYVFFT--NGRIEEFMDGYALS  189 (458)
T ss_dssp             -SCHHHHHHHHHHHTT-----SSS-BCCEEEEET--TEEEEECCCSEECC
T ss_pred             -cCHHHHHHHHHHHHh-----cCC-CCCEEEEeC--CeEEEEeeCCccCC
Confidence             122456666666643     123 588886543  35699999997665

>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3

Probab=86.84  E-value=2.9  Score=45.00  Aligned_cols=78  Identities=18%  Similarity=0.254  Sum_probs=43.6

Q ss_pred             CeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH-HHHHHHHhC--Cc--c-ccCCCCCcEEEeecCCCcEEEEeec
Q 004234          409 PQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE-SYLEQILSH--GF--F-HADPHPGNIAVDDVNGGRLIFYDFG  481 (766)
Q Consensus       409 ~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~-~~l~qI~~~--Gf--f-HaDpHPGNILV~~~~~g~l~LiDFG  481 (766)
                      ...++|||++|.++.+...... .-+..+. ...+-+ ..+..++..  .+  . +.--.|+|||+.+ +++++..||.+
T Consensus       156 ~~~l~meyv~G~~L~e~~~~~~~~~f~~~~-~k~LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~-~n~~~~~IDhn  233 (342)
T 1cja_A          156 ANILLMELVRGITLNKLTTTSAPEVLTKST-MQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSE-RGATVVPIDSK  233 (342)
T ss_dssp             SEEEEEECCCEEESTTCCSSSHHHHSCHHH-HHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEES-BTTCEEECSCC
T ss_pred             cceehhhhcCCCccccchhhhhhhhcCHHH-HHhhchhheehhhhcCCccCcccccCCCChhheEEeC-CCCeEEEEcCC
Confidence            4569999999998876432100 0012222 222222 223333322  22  1 1124789999986 34579999999


Q ss_pred             ceeccCh
Q 004234          482 MMGSISP  488 (766)
Q Consensus       482 lv~~L~~  488 (766)
                      ++..-+.
T Consensus       234 ~af~~~s  240 (342)
T 1cja_A          234 IIPLDAS  240 (342)
T ss_dssp             CCCCCSS
T ss_pred             ccccCCc
Confidence            9965443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	766
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-06
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	4e-05
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	6e-05
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	9e-05
d1zyla1	325	d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId:	1e-04
d1nd4a_	255	d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferas	1e-04
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	7e-04
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	9e-04
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	0.001
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	0.001
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	0.002

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 34/207 (16%), Positives = 58/207 (28%), Gaps = 56/207 (27%)

Query: 285 LGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAE 344
           +G   D  F +FD+E I   S   V++       V V       + L   + +  +  AE
Sbjct: 2   VGMSNDGRFLKFDIE-IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAE 60

Query: 345 YLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW 404
            L+ +   +       V  YD   S +  +                              
Sbjct: 61  MLKGLQHPN------IVRFYDSWESTVKGKKCI--------------------------- 87

Query: 405 EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL---------SHGF 455
                 +L  E +         +L       K +    + S+  QIL         +   
Sbjct: 88  ------VLVTELMTS------GTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPI 135

Query: 456 FHADPHPGNIAVDDVNGGRLIFYDFGM 482
            H D    NI +     G +   D G+
Sbjct: 136 IHRDLKCDNIFITGPT-GSVKIGDLGL 161

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 29/210 (13%), Positives = 63/210 (30%), Gaps = 62/210 (29%)

Query: 290 DDVFERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYL 346
           D V + +D+ E +   + G VHR   +  G     K     +    + D + +R   + +
Sbjct: 22  DHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF----VMTPHESDKETVRKEIQTM 77

Query: 347 QKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY 406
             +           V ++D                                      +E 
Sbjct: 78  SVLR------HPTLVNLHD-------------------------------------AFED 94

Query: 407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS-------HGFFHAD 459
               ++  E++ G ++      +++  +  ++       Y+ Q+         + + H D
Sbjct: 95  DNEMVMIYEFMSGGEL-----FEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLD 149

Query: 460 PHPGNIAVDDVNGGRLIFYDFGMMGSISPN 489
             P NI         L   DFG+   + P 
Sbjct: 150 LKPENIMFTTKRSNELKLIDFGLTAHLDPK 179

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 29/204 (14%), Positives = 68/204 (33%), Gaps = 52/204 (25%)

Query: 291 DVFERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
            V++ +D+ E + + + G VHR   K  G   V K     +   + +D   ++     + 
Sbjct: 26  SVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKF----INTPYPLDKYTVKNEISIMN 81

Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
           ++           + ++D                                      +E  
Sbjct: 82  QLH------HPKLINLHD-------------------------------------AFEDK 98

Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNI 465
              +L +E++ G ++    + ++  +    +  Y  +    L+ +  H   H D  P NI
Sbjct: 99  YEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENI 158

Query: 466 AVDDVNGGRLIFYDFGMMGSISPN 489
             +      +   DFG+   ++P+
Sbjct: 159 MCETKKASSVKIIDFGLATKLNPD 182

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 42.7 bits (100), Expect = 9e-05
 Identities = 29/209 (13%), Positives = 57/209 (27%), Gaps = 55/209 (26%)

Query: 293 FERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKI 349
           +E ++  E +       V R   K   +E  VK+        F  +              
Sbjct: 2   YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAE-------------- 47

Query: 350 DPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTP 409
                           E      +E+D  ++ +            + +++   +   T  
Sbjct: 48  -------------EVQELREATLKEVDILRKVSG---------HPNIIQLKDTYETNTFF 85

Query: 410 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL-------SHGFFHADPHP 462
             L  + +          L +   ++  L        +  +L            H D  P
Sbjct: 86  -FLVFDLMKK------GELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKP 138

Query: 463 GNIAVDDVNGGRLIFYDFGMMGSISPNIR 491
            NI +DD    +L   DFG    + P  +
Sbjct: 139 ENILLDDDMNIKLT--DFGFSCQLDPGEK 165

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 23/191 (12%), Positives = 50/191 (26%), Gaps = 12/191 (6%)

Query: 308 QVHRARLK-GEEVVVKVQRPGLKDLFDI--DLKNLRVIAEYLQKIDPKSDGAKRDWVAIY 364
           +V++ + +     VVK  RP       I  + +    +      +        +  +   
Sbjct: 37  RVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQ 96

Query: 365 DECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINR 424
               +V         EA N +   +  + +  +        +     + +          
Sbjct: 97  GFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKL 156

Query: 425 IQSLDELGVDRKRLGRYAVESYLEQI-------LSHGFFHADPHPGNIAVDDVNGGRLIF 477
            +    +    K     A +  +  +        +    H D H GNI   D  G   + 
Sbjct: 157 FEDATLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWRD--GPMFVD 214

Query: 478 YDFGMMGSISP 488
            D    G    
Sbjct: 215 LDDARNGPAVQ 225

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]} Length = 255

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 28/246 (11%), Positives = 63/246 (25%), Gaps = 23/246 (9%)

Query: 286 GAP--LDDVFERFDVEPIAA-ASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRV 341
           G+P    +    +D        S   V R   +    + VK    G  +    +   L  
Sbjct: 1   GSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSW 60

Query: 342 IAE-YLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
           +A   +          +     +             +   A    + A   + +  +   
Sbjct: 61  LATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPA 120

Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHG---FFH 457
           T  +++     +       ++   +   D     +             ++         H
Sbjct: 121 TCPFDHQAKHRIE-RARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTH 179

Query: 458 ADPHPGNIAVDDVNGGRLIF----------YDFGMM-GSISPNIREGLLEAF---YGIYE 503
            D    NI V++      I            D  +    I+  +     + F   YGI  
Sbjct: 180 GDACLPNIMVENGRFSGFIDCGRLGVADRYQDIALATRDIAEELGGEWADRFLVLYGIAA 239

Query: 504 KDADKV 509
            D+ ++
Sbjct: 240 PDSQRI 245

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 45/238 (18%), Positives = 69/238 (28%), Gaps = 72/238 (30%)

Query: 290 DDVFERF-DVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYL 346
           DD  + F D+  I   S G V+ AR     E V +K      K   +   +++     +L
Sbjct: 11  DDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS-NEKWQDIIKEVRFL 69

Query: 347 QKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY 406
           QK+         + +                                          +  
Sbjct: 70  QKLR------HPNTIQYRG-------------------------------------CYLR 86

Query: 407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL-------SHGFFHAD 459
                L MEY  G       + D L V +K L    + +     L       SH   H D
Sbjct: 87  EHTAWLVMEYCLG------SASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRD 140

Query: 460 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR----------EGLLEAFYGIYEKDAD 507
              GNI + +   G +   DFG    ++P             E +L    G Y+   D
Sbjct: 141 VKAGNILLSE--PGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVD 196

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 9e-04
 Identities = 29/215 (13%), Positives = 62/215 (28%), Gaps = 54/215 (25%)

Query: 293 FERFDV-EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP 351
            +   + + I     G V     +G +V VK     +K+  D   +     A  + ++  
Sbjct: 6   MKELKLLQTIGKGEFGDVMLGDYRGNKVAVKC----IKN--DATAQAFLAEASVMTQLR- 58

Query: 352 KSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQI 411
                  + V +                                      +  E      
Sbjct: 59  -----HSNLVQLLG------------------------------------VIVEEKGGLY 77

Query: 412 LTMEYVPGIKI-NRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVD 468
           +  EY+    + + ++S     +    L +++++    +E +  + F H D    N+ V 
Sbjct: 78  IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVS 137

Query: 469 DVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYE 503
           +         DFG+    S     G L   +   E
Sbjct: 138 E--DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPE 170

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 0.001
 Identities = 29/206 (14%), Positives = 62/206 (30%), Gaps = 43/206 (20%)

Query: 288 PLDDVFERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAE 344
           P  D   +++    I   + G+V +AR +  G++V +K     +++  +          +
Sbjct: 4   PFCDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVL--MENEKEGFPITALREIK 61

Query: 345 YLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW 404
            LQ +         + V + + C +                      K   Y        
Sbjct: 62  ILQLLK------HENVVNLIEICRTKASPYNRC--------------KGSIY-------- 93

Query: 405 EYTTPQILTMEYVP-GIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 463
                  L  ++    +       L +  +   +     + + L  I  +   H D    
Sbjct: 94  -------LVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAA 146

Query: 464 NIAVDDVNGGRLIFYDFGMMGSISPN 489
           N+ +     G L   DFG+  + S  
Sbjct: 147 NVLIT--RDGVLKLADFGLARAFSLA 170

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 15/107 (14%)

Query: 412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL-------SHGFFHADPHPGN 464
             + Y           L +               Y  +I+         G  H D  P N
Sbjct: 85  FGLSYAKN------GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPEN 138

Query: 465 IAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 511
           I +++     +   DFG    +SP  ++    +F G  +  + ++L 
Sbjct: 139 ILLNE--DMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLT 183

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 29/207 (14%), Positives = 57/207 (27%), Gaps = 65/207 (31%)

Query: 294 ERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKID 350
           + F+    + A + G V +   K  G  +  K+      ++       +    + L + +
Sbjct: 6   DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIH---LEIKPAIRNQIIRELQVLHECN 62

Query: 351 PKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQ 410
                     V  Y                                       +      
Sbjct: 63  ------SPYIVGFYG-------------------------------------AFYSDGEI 79

Query: 411 ILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS--------HGFFHADPHP 462
            + ME++ G       SLD++     R+    +      ++         H   H D  P
Sbjct: 80  SICMEHMDG------GSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKP 133

Query: 463 GNIAVDDVNGGRLIFYDFGMMGSISPN 489
            NI V+    G +   DFG+ G +  +
Sbjct: 134 SNILVNS--RGEIKLCDFGVSGQLIDS 158

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	766
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.79
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.78
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.77
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.77
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.77
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.77
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.77
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.76
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.76
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.75
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.75
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.75
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.75
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.75
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.75
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.75
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.74
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.74
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.74
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.74
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.73
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.73
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.73
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.72
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.72
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.71
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.71
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.71
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.71
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.71
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.71
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.7
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.7
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.69
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.68
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.67
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.67
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.67
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.67
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.66
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.65
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.65
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.65
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.65
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.64
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.64
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.63
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.63
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.63
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.61
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.6
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.59
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.58
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.56
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.56
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.55
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.54
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.53
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.49
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.41
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	98.72
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.34
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	98.3
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	98.23
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	97.44
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	96.66

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.79  E-value=5.8e-20  Score=198.25  Aligned_cols=193  Identities=17%  Similarity=0.264  Sum_probs=136.4

Q ss_pred             hhhhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHH
Q 004234          290 DDVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (766)
Q Consensus       290 eeiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E  366 (766)
                      ..+|+.|+. +.||+|+||.||+|+.  +|+.||||+.+.....                                    
T Consensus        25 ~~~~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~------------------------------------   68 (352)
T d1koba_          25 GSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPL------------------------------------   68 (352)
T ss_dssp             SCGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHH------------------------------------
T ss_pred             CCcccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchh------------------------------------
Confidence            356666654 7899999999999998  6999999987432110                                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH-
Q 004234          367 CASVLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE-  444 (766)
Q Consensus       367 ~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~-  444 (766)
                            .+-.+.+|++.+.++    . +++| .+-.++ +.....+|||||++|++|.+........++...+...+.+ 
T Consensus        69 ------~~~~~~~Ei~il~~l----~-HpnIv~~~~~~-~~~~~~~ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi  136 (352)
T d1koba_          69 ------DKYTVKNEISIMNQL----H-HPKLINLHDAF-EDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQA  136 (352)
T ss_dssp             ------HHHHHHHHHHHHTTC----C-STTBCCEEEEE-ECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHhC----C-CCCCCcEEEEE-EECCEEEEEEEcCCCChHHHHHHhcCCCCCHHHHHHHHHHH
Confidence                  001234555555443    2 3333 222222 3456679999999999998754333334666655554433 


Q ss_pred             -HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004234          445 -SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG  523 (766)
Q Consensus       445 -~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~  523 (766)
                       ..+..+|..|++|||+||+|||++...+|+++|+|||++..+++....       ....+++.++++++..-...++.+
T Consensus       137 ~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~  209 (352)
T d1koba_         137 CEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV-------KVTTATAEFAAPEIVDREPVGFYT  209 (352)
T ss_dssp             HHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCE-------EEECSSGGGCCHHHHTTCCBCHHH
T ss_pred             HHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCCCce-------eeccCcccccCHHHHcCCCCCCcc
Confidence             347889999999999999999997544789999999999998764321       223567889999998877677788


Q ss_pred             CHHHHHHHHHHHHH
Q 004234          524 DTTAVRRTAQFFLN  537 (766)
Q Consensus       524 D~~~l~~~i~~~l~  537 (766)
                      |++++...+++++.
T Consensus       210 DiwSlGvilyellt  223 (352)
T d1koba_         210 DMWAIGVLGYVLLS  223 (352)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHh
Confidence            99999988877663

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.4e-19  Score=190.55  Aligned_cols=182  Identities=18%  Similarity=0.158  Sum_probs=131.3

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||.||+|+.  +|+.||||+.+..-...                                    .+      .
T Consensus        26 ~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~------------------------------------~~------~   63 (293)
T d1yhwa1          26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK------------------------------------KE------L   63 (293)
T ss_dssp             EECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSC------------------------------------HH------H
T ss_pred             EEEecCcCcEEEEEEECCCCCEEEEEEEecccChH------------------------------------HH------H
Confidence            5799999999999998  59999999874221000                                    00      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++     ++|+|.-..-+.......+|||||++|++|.++..  ..+++...+...+.+  ..+..+|..|
T Consensus        64 ~~~E~~il~~l-----~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~~~--~~~l~~~~~~~i~~qi~~aL~yLH~~~  136 (293)
T d1yhwa1          64 IINEILVMREN-----KNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT--ETCMDEGQIAAVCRECLQALEFLHSNQ  136 (293)
T ss_dssp             HHHHHHHHHHC-----CCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC-----CCCCEeeEeEEEEECCEEEEEEEecCCCcHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            44566555544     23443322222344567799999999999998643  345666555554433  3488899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|||+||.|||++.  +|+++|+|||++..+++....      .....+++.+++|++..-+..++.+|++++...+.+
T Consensus       137 iiHrDiKp~NILl~~--~~~vkl~DFG~a~~~~~~~~~------~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilye  208 (293)
T d1yhwa1         137 VIHRDIKSDNILLGM--DGSVKLTDFGFCAQITPEQSK------RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIE  208 (293)
T ss_dssp             EECCCCSGGGEEECT--TCCEEECCCTTCEECCSTTCC------BCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHH
T ss_pred             CcccCCcHHHeEECC--CCcEeeccchhheeecccccc------ccccccCCCccChhhhcCCCCCchhceehHhHHHHH
Confidence            999999999999985  899999999999988654321      112347889999999988777888999999988877


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       209 mlt  211 (293)
T d1yhwa1         209 MIE  211 (293)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            764

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.6e-19  Score=188.54  Aligned_cols=189  Identities=16%  Similarity=0.161  Sum_probs=118.9

Q ss_pred             ccccccceeEEEEEee--cCe---eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGE---EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~---~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|+||+||+|++  +|+   .||||..+++..+.                                         .
T Consensus        32 ~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------------~   70 (299)
T d1jpaa_          32 QVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEK-----------------------------------------Q   70 (299)
T ss_dssp             EEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHH-----------------------------------------H
T ss_pred             eEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHH-----------------------------------------H
Confidence            6899999999999998  343   58888775432211                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQIL  451 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~  451 (766)
                      .-+|.+|++.+.++    . +|+|.--.-+....+..++||||++|++|.++.......++...+...+.  ...+..+|
T Consensus        71 ~~~~~~E~~~l~~l----~-HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH  145 (299)
T d1jpaa_          71 RRDFLSEASIMGQF----D-HPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLA  145 (299)
T ss_dssp             HHHHHHHHHHHTTC----C-CTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----C-CCCCccEEEEEeeCCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            11456676665544    2 34332222222335677999999999999987654444456555544433  33488899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      ..|++|||+||.|||++.  ++.++|+|||+++.+.+...........+ ..+.+.++++++...+..++.+|++++.-.
T Consensus       146 ~~~iiHrDlKp~NILl~~--~~~~Kl~DFGla~~~~~~~~~~~~~~~~~-~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvv  222 (299)
T d1jpaa_         146 DMNYVHRDLAARNILVNS--NLVCKVSDFGLSRFLEDDTSDPTYTSALG-GKIPIRWTAPEAIQYRKFTSASDVWSYGIV  222 (299)
T ss_dssp             HTTCCCSCCCGGGEEECT--TCCEEECCC------------------------CGGGSCHHHHHSCCCCHHHHHHHHHHH
T ss_pred             hCCCccCccccceEEECC--CCcEEECCcccceEccCCCCcceeeeccc-ccCCccccCHHHHhcCCCCcccccccchHH
Confidence            999999999999999985  89999999999998865433221111111 235678899999998888888899999988


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       223 l~el~  227 (299)
T d1jpaa_         223 MWEVM  227 (299)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77655

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.77  E-value=6.8e-19  Score=172.65  Aligned_cols=151  Identities=16%  Similarity=0.191  Sum_probs=98.8

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      ++||+|++|+||+|++ +|++||||+++++....               ....     ..++..    ............
T Consensus         6 ~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~---------------~~~~-----~~~~~~----~~~~~~~~~~~~   61 (191)
T d1zara2           6 KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSF---------------KKVK-----EKRDYG----DLHFSVLAIRSA   61 (191)
T ss_dssp             EEEEECSSEEEEEEEETTTEEEEEEEECC---------------------CCC-----C-----------CHHHHHHHHH
T ss_pred             CEeeeCcceEEEEEECCCCCEEEEEEEecccchh---------------hhhh-----hhhhhc----cHHHHHHHHHHH
Confidence            5899999999999998 79999999999875421               0000     000000    000011112334


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFH  457 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~~l~qI~~~GffH  457 (766)
                      ..|.+++.++.       .+.+|..+.  ....+|+|||++|.++.++..     .....++..++ ..+.++|.+|++|
T Consensus        62 ~~e~~~l~~l~-------~~~v~~~~~--~~~~~lvme~~~~~~~~~l~~-----~~~~~i~~ql~-~~l~~lH~~giiH  126 (191)
T d1zara2          62 RNEFRALQKLQ-------GLAVPKVYA--WEGNAVLMELIDAKELYRVRV-----ENPDEVLDMIL-EEVAKFYHRGIVH  126 (191)
T ss_dssp             HHHHHHHHHTT-------TSSSCCEEE--EETTEEEEECCCCEEGGGCCC-----SCHHHHHHHHH-HHHHHHHHTTEEC
T ss_pred             HHHHHHHHHcc-------CCCcceEEE--ecCCEEEEEeeccccccchhh-----HHHHHHHHHHH-HHHHHHhhCCEEE
Confidence            56777776653       355677663  345699999999987765321     23445555544 4578899999999


Q ss_pred             cCCCCCcEEEeecCCCcEEEEeecceeccChhhH
Q 004234          458 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR  491 (766)
Q Consensus       458 aDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r  491 (766)
                      +|+||+|||++   ++.++++|||++...+.+..
T Consensus       127 rDiKP~NILv~---~~~~~liDFG~a~~~~~~~~  157 (191)
T d1zara2         127 GDLSQYNVLVS---EEGIWIIDFPQSVEVGEEGW  157 (191)
T ss_dssp             SCCSTTSEEEE---TTEEEECCCTTCEETTSTTH
T ss_pred             ccCChhheeee---CCCEEEEECCCcccCCCCCc
Confidence            99999999998   45699999999988875443

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3e-19  Score=187.26  Aligned_cols=191  Identities=16%  Similarity=0.162  Sum_probs=131.3

Q ss_pred             hhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHH
Q 004234          289 LDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (766)
Q Consensus       289 ~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E  366 (766)
                      +++.|+-.  +.||+|+||.||+|+.  +|+.||||+.+....+.                            .      
T Consensus        10 p~d~Y~i~--~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~----------------------------~------   53 (288)
T d2jfla1          10 PEDFWEII--GELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE----------------------------L------   53 (288)
T ss_dssp             GGGTEEEE--EEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGG----------------------------G------
T ss_pred             cccCeEEe--EEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHH----------------------------H------
Confidence            44544322  4799999999999998  59999999985432111                            0      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH-
Q 004234          367 CASVLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE-  444 (766)
Q Consensus       367 ~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~-  444 (766)
                              -.|.+|++.+.++    . +|+| .+-.++ ...+..+|||||++|++|.++.......++...+...+.+ 
T Consensus        54 --------~~~~~E~~il~~l----~-HpnIv~l~~~~-~~~~~~~lvmEy~~~g~L~~~~~~~~~~l~e~~~~~i~~qi  119 (288)
T d2jfla1          54 --------EDYMVEIDILASC----D-HPNIVKLLDAF-YYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQT  119 (288)
T ss_dssp             --------GGTHHHHHHHHHC----C-CTTBCCEEEEE-EETTEEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHhC----C-CCCCCeEEEEE-eeCCeEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHH
Confidence                    0244566655544    2 3433 233333 3356679999999999999875433344665555444433 


Q ss_pred             -HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCC
Q 004234          445 -SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGV  518 (766)
Q Consensus       445 -~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~-----lG~  518 (766)
                       ..+..+|..|++|||+||+|||++.  +|.++|+|||++..+......      .....+++.+++|+++.     .+.
T Consensus       120 ~~gL~ylH~~~ivHrDiKp~NIll~~--~~~~Kl~DFG~a~~~~~~~~~------~~~~~Gt~~y~APE~l~~~~~~~~~  191 (288)
T d2jfla1         120 LDALNYLHDNKIIHRDLKAGNILFTL--DGDIKLADFGVSAKNTRTIQR------RDSFIGTPYWMAPEVVMCETSKDRP  191 (288)
T ss_dssp             HHHHHHHHHTTEECCCCSGGGEEECT--TSCEEECCCTTCEECHHHHHH------HTCCCSCCTTCCHHHHTTCSTTTSS
T ss_pred             HHHHHHHHHCCEEEeecChhheeECC--CCCEEEEechhhhccCCCccc------ccccccccccCCHHHHhhcccCCCC
Confidence             3478899999999999999999985  899999999999877553221      12245788899999874     223


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 004234          519 LVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       519 ~~~~~D~~~l~~~i~~~l~  537 (766)
                      .++.+|++++...+.+++.
T Consensus       192 y~~k~DiwSlGvilyemlt  210 (288)
T d2jfla1         192 YDYKADVWSLGITLIEMAE  210 (288)
T ss_dssp             TTTHHHHHHHHHHHHHHHH
T ss_pred             CChhhhHHHHHHHHHHHhh
Confidence            3556799999988776653

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4e-19  Score=183.37  Aligned_cols=183  Identities=14%  Similarity=0.078  Sum_probs=122.5

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|+||+||+|++ +|+.||||+.+.+...                                           +-+|
T Consensus        11 ~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~-------------------------------------------~~~~   47 (263)
T d1sm2a_          11 QEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS-------------------------------------------EEDF   47 (263)
T ss_dssp             EEEECCSSCCEEEEEETTTEEEEEEECCSSSSC-------------------------------------------HHHH
T ss_pred             EEEeeCCCeEEEEEEECCCCEEEEEEECCCcCc-------------------------------------------HHHH
Confidence            5799999999999999 7899999987543211                                           1146


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      .+|++.+.+++     +++|.--.-+....+..+|||||++|++|.++........+.......+.+  ..+..+|..|+
T Consensus        48 ~~E~~~l~~l~-----HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~i  122 (263)
T d1sm2a_          48 IEEAEVMMKLS-----HPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACV  122 (263)
T ss_dssp             HHHHHHHHHCC-----CTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcC-----CCCcccccceeccCCceEEEEEecCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccce
Confidence            67777776652     343322222223456789999999999999975443344555444433322  34788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~~  535 (766)
                      +|+|+||.||+++.  ++.++|+|||++..+........     ....+.+.+++|++...+..++.+|++++.-.+.++
T Consensus       123 iHrDlKp~Nill~~--~~~~Kl~DFGla~~~~~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el  195 (263)
T d1sm2a_         123 IHRDLAARNCLVGE--NQVIKVSDFGMTRFVLDDQYTSS-----TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEV  195 (263)
T ss_dssp             CCTTCSGGGEEECG--GGCEEECSCC-----------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             eecccchhheeecC--CCCeEecccchheeccCCCceee-----cceecCcccCChHHhcCCCCCchhhhcchHHHHHHH
Confidence            99999999999986  88999999999988765433221     112356778899998888778888999999877766


Q ss_pred             H
Q 004234          536 L  536 (766)
Q Consensus       536 l  536 (766)
                      +
T Consensus       196 ~  196 (263)
T d1sm2a_         196 F  196 (263)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.77  E-value=2.9e-19  Score=192.54  Aligned_cols=193  Identities=17%  Similarity=0.257  Sum_probs=135.9

Q ss_pred             hhhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004234          291 DVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (766)
Q Consensus       291 eiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (766)
                      .+.+.|+. +.||+|+||+||+|+.  +|+.||||+....-..    |                                
T Consensus        23 ~il~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~----~--------------------------------   66 (350)
T d1koaa2          23 HVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHES----D--------------------------------   66 (350)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHH----H--------------------------------
T ss_pred             CCccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchh----h--------------------------------
Confidence            34445543 6899999999999998  5999999987432100    0                                


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--H
Q 004234          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--S  445 (766)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~  445 (766)
                            .-.+.+|++.+.++.    +..-|.+-.++ +.....+|||||++|++|.+........++...+...+.+  .
T Consensus        67 ------~~~~~~E~~il~~l~----HpnIv~~~~~~-~~~~~~~ivmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~  135 (350)
T d1koaa2          67 ------KETVRKEIQTMSVLR----HPTLVNLHDAF-EDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCK  135 (350)
T ss_dssp             ------HHHHHHHHHHHHHTC----CTTBCCEEEEE-EETTEEEEEECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhCC----CCCCCcEEEEE-EECCEEEEEEEcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence                  012455666665552    22223333333 3456789999999999998865333334565555544433  3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~  525 (766)
                      .+..+|..|++|+|+||+|||++...++.++|+|||++..+++....       ....+++.++++++..-.-.+..+|+
T Consensus       136 aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~-------~~~~gT~~Y~aPEv~~~~~~~~~~Di  208 (350)
T d1koaa2         136 GLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV-------KVTTGTAEFAAPEVAEGKPVGYYTDM  208 (350)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCE-------EEECSCTTTCCHHHHHTCCBCHHHHH
T ss_pred             HHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheeccccccc-------ceecCcccccCHHHHcCCCCChhHhh
Confidence            48889999999999999999997534689999999999988765321       12356889999999887666677899


Q ss_pred             HHHHHHHHHHHH
Q 004234          526 TAVRRTAQFFLN  537 (766)
Q Consensus       526 ~~l~~~i~~~l~  537 (766)
                      +++...+.+++.
T Consensus       209 wSlGvilyell~  220 (350)
T d1koaa2         209 WSVGVLSYILLS  220 (350)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHh
Confidence            999988877664

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.2e-19  Score=184.72  Aligned_cols=183  Identities=20%  Similarity=0.191  Sum_probs=129.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||+||+|+.  +|+.||||+..+.....                                 .+.      +-.
T Consensus        12 ~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~---------------------------------~~~------~~~   52 (263)
T d2j4za1          12 RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK---------------------------------AGV------EHQ   52 (263)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------TTC------HHH
T ss_pred             EEEecCCCcEEEEEEECCCCcEEEEEEEchHHccC---------------------------------hHH------HHH
Confidence            6899999999999999  58999999874211000                                 000      113


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|++.+.++    . +|+| .+-.++ ...+..+|||||++|++|.++... ...++...+...+.+  ..+..+|..
T Consensus        53 ~~~E~~il~~l----~-hpnIv~~~~~~-~~~~~~~ivmEy~~~g~L~~~l~~-~~~l~e~~~~~i~~qi~~al~~lH~~  125 (263)
T d2j4za1          53 LRREVEIQSHL----R-HPNILRLYGYF-HDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHSK  125 (263)
T ss_dssp             HHHHHHHHHTC----C-CTTBCCEEEEE-ECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhc----C-CCCCCeEEEEE-EECCEEEEEEeecCCCcHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            44555555443    2 3433 222222 334567899999999999886542 234565555444433  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||+|||++.  +|.++|+|||++...+.....        ...+++.+++|++..-...++.+|++++.-.+.
T Consensus       126 ~ivHrDiKp~Nill~~--~~~~kl~DFG~a~~~~~~~~~--------~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvily  195 (263)
T d2j4za1         126 RVIHRDIKPENLLLGS--AGELKIADFGWSVHAPSSRRT--------TLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCY  195 (263)
T ss_dssp             TCCCCCCCGGGEEECT--TSCEEECCCCSCSCCCCCCCE--------ETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHH
T ss_pred             CeeeeeeccccceecC--CCCEeecccceeeecCCCccc--------ccCCCCcccCHHHHcCCCCCchhhhhhHhHHHH
Confidence            9999999999999985  889999999999887654321        235788999999998777788899999998887


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       196 ell~  199 (263)
T d2j4za1         196 EFLV  199 (263)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7664

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.1e-19  Score=190.93  Aligned_cols=181  Identities=16%  Similarity=0.191  Sum_probs=127.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||.||+|+.  +|+.||||+.+......                                   ...      .
T Consensus        12 ~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~-----------------------------------~~~------~   50 (322)
T d1s9ja_          12 SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPA-----------------------------------IRN------Q   50 (322)
T ss_dssp             EEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTT-----------------------------------HHH------H
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHH-----------------------------------HHH------H
Confidence            6799999999999998  59999999985433221                                   011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh-
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS-  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~-  452 (766)
                      +.+|++.+..+    . +|+| .+-.++ ...+..+|||||++|++|.++... ...++...+...+.+  ..+..+|+ 
T Consensus        51 ~~~Ei~il~~l----~-HpnIv~l~~~~-~~~~~~~iVmEy~~gg~L~~~l~~-~~~l~~~~~~~~~~qil~aL~yLH~~  123 (322)
T d1s9ja_          51 IIRELQVLHEC----N-SPYIVGFYGAF-YSDGEISICMEHMDGGSLDQVLKK-AGRIPEQILGKVSIAVIKGLTYLREK  123 (322)
T ss_dssp             HHHHGGGGGGC----C-CTTBCCEEEEE-ECSSEEEEEEECCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----C-CCCCCcEEEEE-EECCEEEEEEEcCCCCcHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            33444433332    2 3332 222222 334567999999999999987542 233555544443333  34777885 


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      +|++|||+||+|||++.  +|+++|+|||++..+.+....        -..+++.+++|+++.-+..++..|++++...+
T Consensus       124 ~~IiHRDiKP~NILl~~--~~~vkl~DFGla~~~~~~~~~--------~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil  193 (322)
T d1s9ja_         124 HKIMHRDVKPSNILVNS--RGEIKLCDFGVSGQLIDSMAN--------SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSL  193 (322)
T ss_dssp             HCCCCSCCSGGGEEECT--TCCEEECCCCCCHHHHHHTC-----------CCSSCCCCHHHHHCSCCCTTHHHHHHHHHH
T ss_pred             CCEEccccCHHHeeECC--CCCEEEeeCCCccccCCCccc--------cccCCccccCchHHcCCCCCcHHHHHHHHHHH
Confidence            69999999999999985  899999999999877543322        12468889999999887888899999999988


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       194 ~ell~  198 (322)
T d1s9ja_         194 VEMAV  198 (322)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87764

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.7e-19  Score=189.27  Aligned_cols=192  Identities=16%  Similarity=0.265  Sum_probs=135.8

Q ss_pred             hhhhccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004234          291 DVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (766)
Q Consensus       291 eiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (766)
                      ++|+.+.. +.||+|+||+||+|+.  +|+.||||+.+..-.+                                     
T Consensus         2 ~~~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~-------------------------------------   44 (321)
T d1tkia_           2 ELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTD-------------------------------------   44 (321)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHH-------------------------------------
T ss_pred             CCccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCccc-------------------------------------
Confidence            56666544 7899999999999998  5999999998432110                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--H
Q 004234          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--S  445 (766)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~  445 (766)
                            +..+.+|.+.+..+    .+..-|.+-.++ +..+..+|||||++|++|.+...-....++...+...+.+  .
T Consensus        45 ------~~~~~~Ei~il~~l----~HpnIv~~~~~~-~~~~~~~lvmE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~  113 (321)
T d1tkia_          45 ------QVLVKKEISILNIA----RHRNILHLHESF-ESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCE  113 (321)
T ss_dssp             ------HHHHHHHHHHHHHS----CCTTBCCEEEEE-EETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhC----CCCCCCeEEEEE-EECCEEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence                  11234555555443    232223333333 3456789999999999999875433334666666555443  3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004234          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (766)
Q Consensus       446 ~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~  525 (766)
                      .++.+|.+|++|||+||.||+++..+.++++++|||++..+......       ....+.+.+++++...-...++.+|+
T Consensus       114 al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~-------~~~~~t~~y~ape~~~~~~~~~~~Di  186 (321)
T d1tkia_         114 ALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF-------RLLFTAPEYYAPEVHQHDVVSTATDM  186 (321)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEE-------EEEESCGGGSCHHHHTTCEECHHHHH
T ss_pred             HHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhccccCCcc-------cccccccccccchhccCCCCCchhhc
Confidence            48889999999999999999998534568999999999987654321       12346778888888877777778899


Q ss_pred             HHHHHHHHHHHH
Q 004234          526 TAVRRTAQFFLN  537 (766)
Q Consensus       526 ~~l~~~i~~~l~  537 (766)
                      +++...+++++.
T Consensus       187 WSlGvily~ll~  198 (321)
T d1tkia_         187 WSLGTLVYVLLS  198 (321)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHh
Confidence            999988877653

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.4e-19  Score=184.18  Aligned_cols=185  Identities=13%  Similarity=0.110  Sum_probs=124.8

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||+|+||.||+|++++ .||||+.+......                             .    +       .-.|.
T Consensus        14 ~~lG~G~fg~Vy~~~~~~-~vAvK~~~~~~~~~-----------------------------~----~-------~~~~~   52 (276)
T d1uwha_          14 QRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTP-----------------------------Q----Q-------LQAFK   52 (276)
T ss_dssp             SEEEECSSCEEEEEESSS-EEEEEECCCSSCCT-----------------------------T----H-------HHHHH
T ss_pred             EEEeeCCCcEEEEEEECC-EEEEEEEEcccCCH-----------------------------H----H-------HHHHH
Confidence            679999999999999865 49999985432111                             0    0       01355


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeee-ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004234          379 QEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~v~~-e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~Gf  455 (766)
                      +|+..+.++     ++++|.  +.+. ......+|||||++|++|.++.......++...+...+.+  ..+..+|..|+
T Consensus        53 ~E~~~l~~l-----~HpnIv--~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~i  125 (276)
T d1uwha_          53 NEVGVLRKT-----RHVNIL--LFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSI  125 (276)
T ss_dssp             HHHHHHTTC-----CCTTBC--CEEEEECSSSCEEEEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhC-----CCCCEe--eeeEEEeccEEEEEEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCCE
Confidence            666666554     234443  2222 2345679999999999999876444444666655544433  34788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC---CCCCCCCHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG---VLVPTGDTTAVRRTA  532 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG---~~~~~~D~~~l~~~i  532 (766)
                      +|||+||.|||++.  ++.++|+|||++..++.......    ..-..+++.+++|++....   ..+..+|++++.-.+
T Consensus       126 vHrDlKp~NiLl~~--~~~~Kl~DFGla~~~~~~~~~~~----~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l  199 (276)
T d1uwha_         126 IHRDLKSNNIFLHE--DLTVKIGDFGLATVKSRWSGSHQ----FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVL  199 (276)
T ss_dssp             CCSCCCGGGEEEET--TSSEEECCCCCSCC----------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHH
T ss_pred             eccccCHHHEEEcC--CCCEEEccccceeeccccCCccc----ccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHH
Confidence            99999999999986  89999999999988765433221    1224578899999998643   345567999999888


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       200 ~el~t  204 (276)
T d1uwha_         200 YELMT  204 (276)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77664

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.3e-19  Score=188.55  Aligned_cols=186  Identities=18%  Similarity=0.195  Sum_probs=126.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||.||+|+.  +|+.||||+.+..-..                                   +.      .-+
T Consensus        11 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~-----------------------------------~~------~~~   49 (271)
T d1nvra_          11 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV-----------------------------------DC------PEN   49 (271)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECC------------------------------------------------C
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEehhhcc-----------------------------------hH------HHH
Confidence            6899999999999998  5999999987432100                                   00      013


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++     ++|+|.--.-+....+..+|||||++|++|.++... ...++...+...+.+  ..++.+|..|
T Consensus        50 ~~~Ei~~l~~l-----~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~l~~-~~~l~e~~~~~i~~qi~~al~ylH~~~  123 (271)
T d1nvra_          50 IKKEICINKML-----NHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLHGIG  123 (271)
T ss_dssp             HHHHHHHHHTC-----CCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSBT-TTBCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC-----CCCCEeeEeeeeccCceeEEEEeccCCCcHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence            45566555544     234332222222335567899999999999987532 233555544444333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~-~~~~D~~~l~~~i~  533 (766)
                      ++|||+||+|||++.  ++.++|+|||++..++.......    .....+++.+++|++....-. +..+|++++.-.+.
T Consensus       124 IiHrDiKp~NILl~~--~~~~KL~DFG~a~~~~~~~~~~~----~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvily  197 (271)
T d1nvra_         124 ITHRDIKPENLLLDE--RDNLKISDFGLATVFRYNNRERL----LNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLT  197 (271)
T ss_dssp             EECSCCCGGGEEECT--TCCEEECCCTTCEECEETTEECC----BCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHH
T ss_pred             CccCcccHHHEEECC--CCCEEEccchhheeeccCCcccc----ccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHH
Confidence            999999999999985  78999999999998754432211    111347889999999876544 45679999998887


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       198 eml~  201 (271)
T d1nvra_         198 AMLA  201 (271)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7764

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.8e-18  Score=180.31  Aligned_cols=187  Identities=14%  Similarity=0.138  Sum_probs=125.0

Q ss_pred             ccccccceeEEEEEeec--C----eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK--G----EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~--G----~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.||+|+||.||+|.++  +    ..||||+.+++..+.                                         
T Consensus        13 ~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~-----------------------------------------   51 (283)
T d1mqba_          13 KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEK-----------------------------------------   51 (283)
T ss_dssp             EEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHH-----------------------------------------
T ss_pred             eEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChH-----------------------------------------
Confidence            57999999999999983  2    479999885443211                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      .+.+|.+|++.+.+++     +++|.--.-+.......+++|||++|+.+.+........++...+...+.+  ..+..+
T Consensus        52 ~~~~~~~E~~il~~l~-----H~nIv~~~g~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~l  126 (283)
T d1mqba_          52 QRVDFLGEAGIMGQFS-----HHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYL  126 (283)
T ss_dssp             HHHHHHHHHHHHHTCC-----CTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC-----CCCEeeeeEEEecCCceEEEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhc
Confidence            1235677777666552     233321111223346779999999999988865444444565555544433  458889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|+||+|||++.  ++.++|+|||+++.+.........   .....+++.+++|+....+..++.+|++++.-
T Consensus       127 H~~~iiHrDlKp~NILl~~--~~~~Kl~DFGla~~~~~~~~~~~~---~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gv  201 (283)
T d1mqba_         127 ANMNYVHRDLAARNILVNS--NLVCKVSDFGLSRVLEDDPEATYT---TSGGKIPIRWTAPEAISYRKFTSASDVWSFGI  201 (283)
T ss_dssp             HHTTCCCSCCCGGGEEECT--TCCEEECCCCC--------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHH
T ss_pred             cccccccCccccceEEECC--CCeEEEcccchhhcccCCCccceE---eccCCCCccccCHHHHccCCCCCcccccccHH
Confidence            9999999999999999985  899999999999987654332221   11224677899999999888888899999998


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       202 il~el~  207 (283)
T d1mqba_         202 VMWEVM  207 (283)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877654

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=8.2e-19  Score=184.04  Aligned_cols=186  Identities=16%  Similarity=0.196  Sum_probs=126.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||+||+|+.  +|+.||||+.+....                ...                 +..      -.
T Consensus        14 ~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~----------------~~~-----------------~~~------~~   54 (288)
T d1uu3a_          14 KILGEGSFSTVVLARELATSREYAIKILEKRHI----------------IKE-----------------NKV------PY   54 (288)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH----------------HHT-----------------TCH------HH
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehHHc----------------cCH-----------------HHH------HH
Confidence            6899999999999998  599999998742100                000                 000      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      +.+|.+.+.++    . +++|  .+.|.  +.....+|||||++|++|.++... ...++...+...+.+  ..++.+|.
T Consensus        55 ~~~E~~il~~l----~-HpnI--v~l~~~~~~~~~~~ivmEy~~gg~L~~~~~~-~~~l~e~~~~~~~~qi~~al~ylH~  126 (288)
T d1uu3a_          55 VTRERDVMSRL----D-HPFF--VKLYFTFQDDEKLYFGLSYAKNGELLKYIRK-IGSFDETCTRFYTAEIVSALEYLHG  126 (288)
T ss_dssp             HHHHHHHHHHC----C-STTB--CCEEEEEECSSEEEEEECCCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc----C-CCCe--eEEEEEEEECCEEEEEEEccCCCCHHHhhhc-cCCCCHHHHHHHHHHHHHHHHhhcc
Confidence            44555555544    2 2333  23332  234566999999999999886432 233555444433332  34788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      .|++|||+||+||+++.  +|.++|+|||++..++........    ....+++.+++|++..-...+..+|++++...+
T Consensus       127 ~~iiHrDiKp~NIll~~--~~~vkl~DFG~a~~~~~~~~~~~~----~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvil  200 (288)
T d1uu3a_         127 KGIIHRDLKPENILLNE--DMHIQITDFGTAKVLSPESKQARA----NSFVGTAQYVSPELLTEKSACKSSDLWALGCII  200 (288)
T ss_dssp             TTEECSCCSGGGEEECT--TSCEEECCCTTCEECC--------------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             ccEEcCcCCccccccCC--CceEEecccccceecccCCccccc----ccccCCccccCceeeccCCCCcccceehhhHHH
Confidence            99999999999999986  889999999999998765443222    123478999999999877777788999999888


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       201 yell~  205 (288)
T d1uu3a_         201 YQLVA  205 (288)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            77664

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6.6e-19  Score=184.38  Aligned_cols=184  Identities=13%  Similarity=0.129  Sum_probs=130.5

Q ss_pred             cccccceeEEEEEee----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          300 PIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       300 PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      .||+|+||.||+|++    ++..||||+.+++..+.                                         ..-
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~-----------------------------------------~~~   54 (285)
T d1u59a_          16 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKA-----------------------------------------DTE   54 (285)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHH-----------------------------------------HHH
T ss_pred             EEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHH-----------------------------------------HHH
Confidence            499999999999987    25689999986543221                                         011


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          376 DYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      +|.+|++.+.++.     +|+| .+-.++  .+...+|||||++|++|.++.......++...+...+.+  ..+..+|.
T Consensus        55 ~~~~E~~il~~l~-----HpnIv~l~g~~--~~~~~~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~  127 (285)
T d1u59a_          55 EMMREAQIMHQLD-----NPYIVRLIGVC--QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEE  127 (285)
T ss_dssp             HHHHHHHHHHHCC-----CTTBCCEEEEE--ESSSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-----CCCEeeEeeee--ccCeEEEEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4567777666552     3333 222222  245679999999999999875433344566555555444  34888999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      .|++|+|+||.||+++.  ++.++|+|||+++.+........   ......+.+.+++|++...+..++.+|++++.-.+
T Consensus       128 ~~iiHrDlKp~Nill~~--~~~~Kl~DFGla~~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l  202 (285)
T d1u59a_         128 KNFVHRDLAARNVLLVN--RHYAKISDFGLSKALGADDSYYT---ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTM  202 (285)
T ss_dssp             TTEECCCCSGGGEEEEE--TTEEEECCCTTCEECTTCSCEEC---CCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHH
T ss_pred             CCeecCcCchhheeecc--CCceeeccchhhhcccccccccc---cccccccCccccChHHHhCCCCCccchhhcchHHH
Confidence            99999999999999986  89999999999998765432110   01122456788999999888888888999999877


Q ss_pred             HHHH
Q 004234          533 QFFL  536 (766)
Q Consensus       533 ~~~l  536 (766)
                      .+++
T Consensus       203 ~E~l  206 (285)
T d1u59a_         203 WEAL  206 (285)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7655

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=6e-19  Score=184.67  Aligned_cols=183  Identities=14%  Similarity=0.065  Sum_probs=129.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||+||+|++  +|+.||||+.+.+..+.                                           -+
T Consensus        23 ~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~-------------------------------------------~~   59 (287)
T d1opja_          23 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-------------------------------------------EE   59 (287)
T ss_dssp             EETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCH-------------------------------------------HH
T ss_pred             eEEeeCCCeEEEEEEECCCCeEEEEEEECCccchH-------------------------------------------HH
Confidence            6799999999999999  59999999875432110                                           03


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYA--VESYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~la~~l--v~~~l~qI~~~  453 (766)
                      |.+|++.+.+++     +++|.--.-+.......+|+|||++|+++.++... ....++...+...+  +...++.+|..
T Consensus        60 ~~~E~~il~~l~-----HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~  134 (287)
T d1opja_          60 FLKEAAVMKEIK-----HPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK  134 (287)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCC-----CCCEecCCccEeeCCeeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHC
Confidence            566777666652     34332222222334567999999999999886532 22334544444433  33458889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|||+||.|||++.  ++.++|+|||++..++.......     ....+.+.+++++....+..++.+|++++.-.+.
T Consensus       135 ~iiHrDlKp~NILl~~--~~~~Kl~DFG~a~~~~~~~~~~~-----~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~  207 (287)
T d1opja_         135 NFIHRDLAARNCLVGE--NHLVKVADFGLSRLMTGDTYTAH-----AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLW  207 (287)
T ss_dssp             TCCCSCCSGGGEEECG--GGCEEECCCCCTTTCCSSSSEEE-----TTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHH
T ss_pred             CcccCccccCeEEECC--CCcEEEccccceeecCCCCceee-----ccccccccccChHHHcCCCCCchhhhhhHHHHHH
Confidence            9999999999999986  78999999999988765432111     1123567788898888887788889999998777


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       208 ell  210 (287)
T d1opja_         208 EIA  210 (287)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.7e-18  Score=183.29  Aligned_cols=190  Identities=18%  Similarity=0.195  Sum_probs=132.9

Q ss_pred             ChhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004234          288 PLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (766)
Q Consensus       288 ~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (766)
                      ++++.|..+  +.||+|+||.||+|+.  +|+.||||+.+......                                 .
T Consensus        12 dp~~~y~~l--~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~---------------------------------~   56 (309)
T d1u5ra_          12 DPEKLFSDL--REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS---------------------------------N   56 (309)
T ss_dssp             CHHHHEEEE--EEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCH---------------------------------H
T ss_pred             CcHHhcEee--EEEecCCCeEEEEEEECCCCcEEEEEEEchhhccC---------------------------------H
Confidence            455665544  5799999999999998  69999999885432211                                 0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH
Q 004234          366 ECASVLYQEIDYTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE  444 (766)
Q Consensus       366 E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~  444 (766)
                      +..      -++.+|++.+.++    . +|+ |.+-.++ ......+|||||++|+.+..+.. ....++...+...+.+
T Consensus        57 ~~~------~~~~~Ei~il~~l----~-HpnIv~~~~~~-~~~~~~~iv~E~~~~g~l~~~~~-~~~~l~e~~~~~i~~q  123 (309)
T d1u5ra_          57 EKW------QDIIKEVRFLQKL----R-HPNTIQYRGCY-LREHTAWLVMEYCLGSASDLLEV-HKKPLQEVEIAAVTHG  123 (309)
T ss_dssp             HHH------HHHHHHHHHHTTC----C-CTTBCCEEEEE-EETTEEEEEEECCSEEHHHHHHH-HTSCCCHHHHHHHHHH
T ss_pred             HHH------HHHHHHHHHHHHC----C-CCCEeeEEEEE-EECCEEEEEEEecCCCchHHHHH-hCCCCCHHHHHHHHHH
Confidence            001      1345566655544    2 333 3333333 23456799999999998876543 2344565555444433


Q ss_pred             --HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCC
Q 004234          445 --SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVL  519 (766)
Q Consensus       445 --~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~---lG~~  519 (766)
                        ..+..+|..|++|||+||.|||++.  ++.++|+|||++........          ..+++.+++|++..   .+..
T Consensus       124 i~~aL~yLH~~~iiHrDiKp~NILl~~--~~~~Kl~DFG~a~~~~~~~~----------~~GT~~Y~APE~~~~~~~~~y  191 (309)
T d1u5ra_         124 ALQGLAYLHSHNMIHRDVKAGNILLSE--PGLVKLGDFGSASIMAPANS----------FVGTPYWMAPEVILAMDEGQY  191 (309)
T ss_dssp             HHHHHHHHHHTTCBCCCCSGGGEEEET--TTEEEECCCTTCBSSSSBCC----------CCSCGGGCCHHHHTTTTSCCB
T ss_pred             HHHHHHHHHhCCEeccCCCcceEEECC--CCCEEEeecccccccCCCCc----------cccCccccCHHHHhccCCCCc
Confidence              3488899999999999999999986  89999999999998765432          35789999999984   2445


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 004234          520 VPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       520 ~~~~D~~~l~~~i~~~l~  537 (766)
                      +..+|++++...+.+++.
T Consensus       192 ~~~~DiwSlGvilyel~~  209 (309)
T d1u5ra_         192 DGKVDVWSLGITCIELAE  209 (309)
T ss_dssp             CTHHHHHHHHHHHHHHHH
T ss_pred             CchhhhhhHHHHHHHHHH
Confidence            667899999988877654

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=8.8e-19  Score=185.31  Aligned_cols=185  Identities=15%  Similarity=0.098  Sum_probs=117.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||.||+|+.  +|+.||||+........                                         .+-.
T Consensus        15 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~-----------------------------------------~~~~   53 (307)
T d1a06a_          15 DVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEG-----------------------------------------KEGS   53 (307)
T ss_dssp             EESBSGGGGGEEEEEETTTCCEEEEEEEEC--------------------------------------------------
T ss_pred             EEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhh-----------------------------------------HHHH
Confidence            5799999999999998  59999999974321110                                         0112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|.+.+.++    . +|+|.--.-+.+..+..+|||||++|++|.++... ...++...+...+.+  ..+..+|..|
T Consensus        54 ~~~Ei~il~~l----~-HpnIv~l~~~~~~~~~~~lvmE~~~gg~L~~~l~~-~~~l~e~~~~~~~~qi~~al~ylH~~~  127 (307)
T d1a06a_          54 MENEIAVLHKI----K-HPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVE-KGFYTERDASRLIFQVLDAVKYLHDLG  127 (307)
T ss_dssp             -CHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHT-CSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCCCCcEEEEEEECCEEEEEEeccCCCcHHHhhhc-ccCCCHHHHHHHHHHHHHHHHhhhhce
Confidence            34555555443    2 34332222222345667999999999999987532 234555554444433  3478899999


Q ss_pred             ccccCCCCCcEEEee-cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~-~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||.||++.. .+++.++|+|||++...++....       ....+++.+++|++..-+..++.+|++++.-.+.
T Consensus       128 iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~-------~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvily  200 (307)
T d1a06a_         128 IVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVL-------STACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAY  200 (307)
T ss_dssp             CCCSCCCGGGEEESSSSTTCCEEECCC-------------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHH
T ss_pred             eeeEEecccceeecccCCCceEEEeccceeEEccCCCee-------eeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHH
Confidence            999999999999963 23689999999999887654321       1123688899999998777788899999998887


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       201 ell~  204 (307)
T d1a06a_         201 ILLC  204 (307)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7653

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.2e-18  Score=180.72  Aligned_cols=181  Identities=16%  Similarity=0.143  Sum_probs=128.5

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|+||.||+|++ +|+.||||+.+.+....                                           -.|
T Consensus        19 ~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~-------------------------------------------~~~   55 (272)
T d1qpca_          19 ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSP-------------------------------------------DAF   55 (272)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECTTSSCH-------------------------------------------HHH
T ss_pred             EEEecCCCcEEEEEEECCCCEEEEEEEccCcCCH-------------------------------------------HHH
Confidence            5799999999999999 57899999874321110                                           135


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      .+|+..+.++.     +++|  .+.+.- .....+|||||++|++|.+..... ...++...+...+.+  ..+..+|..
T Consensus        56 ~~E~~~l~~l~-----HpnI--v~~~g~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~  128 (272)
T d1qpca_          56 LAEANLMKQLQ-----HQRL--VRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER  128 (272)
T ss_dssp             HHHHHHHHHCC-----CTTB--CCEEEEECSSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCC-----CCCE--eEEEeeeccCCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            66777666652     2332  222321 235569999999999998854322 223555554444433  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|||+||.||+++.  ++.++|+|||+++.+++.....     .....+.+.+++|+....+..++.+|++++.-.+.
T Consensus       129 ~ivHrDiKp~NIll~~--~~~~Kl~DFGla~~~~~~~~~~-----~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~  201 (272)
T d1qpca_         129 NYIHRDLRAANILVSD--TLSCKIADFGLARLIEDNEYTA-----REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLT  201 (272)
T ss_dssp             TEECSCCSGGGEEECT--TSCEEECCCTTCEECSSSCEEC-----CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHH
T ss_pred             CcccCccchhheeeec--ccceeeccccceEEccCCcccc-----ccccCCcccccChHHHhCCCCCchhhhhhhHHHHH
Confidence            9999999999999985  8999999999999876532111     11124567789999988888888889999998877


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       202 ell  204 (272)
T d1qpca_         202 EIV  204 (272)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=2.2e-18  Score=178.64  Aligned_cols=190  Identities=22%  Similarity=0.200  Sum_probs=124.8

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||.||+|+.  +|+.||||+.++.....                                 .+.      ...
T Consensus        13 ~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~---------------------------------~~~------~~~   53 (277)
T d1o6ya_          13 EILGFGGMSEVHLARDLRLHRDVAVKVLRADLARD---------------------------------PSF------YLR   53 (277)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTC---------------------------------HHH------HHH
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccC---------------------------------HHH------HHH
Confidence            6899999999999998  69999999986543221                                 001      123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~  451 (766)
                      |.+|++.+..+    .+..-|.+-.++....   ...+|||||++|++|.+.... ...++...+...+.+  ..+..+|
T Consensus        54 ~~~E~~~l~~~----~hpniv~~~~~~~~~~~~~~~~~lvmE~~~g~~L~~~~~~-~~~l~~~~~~~i~~qi~~al~~lH  128 (277)
T d1o6ya_          54 FRREAQNAAAL----NHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHT-EGPMTPKRAIEVIADACQALNFSH  128 (277)
T ss_dssp             HHHHHHHHHTC----CCTTBCCEEEEEEEECSSSEEEEEEEECCCEEEHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCCCcccceeeeccCCCceEEEEEECCCCCEehhhhcc-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            55666655543    2222222323332211   125899999999999886432 234565555444433  3488899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~  531 (766)
                      +.|++|||+||+||+++.  ++.++++|||....+.........   .....+++.+++|++..-+..++.+|++++...
T Consensus       129 ~~~iiHrDiKP~NIll~~--~~~~~l~d~~~~~~~~~~~~~~~~---~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvi  203 (277)
T d1o6ya_         129 QNGIIHRDVKPANIMISA--TNAVKVMDFGIARAIADSGNSVTQ---TAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV  203 (277)
T ss_dssp             HTTEECCCCSGGGEEEET--TSCEEECCCTTCEECC-------------------TTCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred             hCCccCccccCcccccCc--cccceeehhhhhhhhccccccccc---cccccCcccccCHHHHcCCCCCcceecccchHH
Confidence            999999999999999986  889999999999877554322111   122346889999999987777778899999988


Q ss_pred             HHHHHH
Q 004234          532 AQFFLN  537 (766)
Q Consensus       532 i~~~l~  537 (766)
                      +.+++.
T Consensus       204 lyellt  209 (277)
T d1o6ya_         204 LYEVLT  209 (277)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            877664

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.8e-19  Score=182.14  Aligned_cols=189  Identities=13%  Similarity=0.085  Sum_probs=129.5

Q ss_pred             ccCcccccccceeEEEEEee----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004234          295 RFDVEPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (766)
Q Consensus       295 ~fd~~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (766)
                      .++++.||+|+||+||+|++    .++.||||+.+....+.                                  +.   
T Consensus         9 ~le~k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~----------------------------------~~---   51 (277)
T d1xbba_           9 TLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDP----------------------------------AL---   51 (277)
T ss_dssp             EEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----C----------------------------------HH---
T ss_pred             eecCCCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCH----------------------------------HH---
Confidence            34556799999999999987    25789999984322110                                  00   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHH
Q 004234          371 LYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       371 l~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l  447 (766)
                         .-+|.+|++.+.++    . +|+| .+-.++  .....+|||||++|++|.++... ...++...+...+.+  ..+
T Consensus        52 ---~~~~~~E~~il~~l----~-HpnIv~~~g~~--~~~~~~lvmE~~~~g~L~~~l~~-~~~l~~~~~~~i~~qi~~gl  120 (277)
T d1xbba_          52 ---KDELLAEANVMQQL----D-NPYIVRMIGIC--EAESWMLVMEMAELGPLNKYLQQ-NRHVKDKNIIELVHQVSMGM  120 (277)
T ss_dssp             ---HHHHHHHHHHHHTC----C-CTTBCCEEEEE--ESSSEEEEEECCTTEEHHHHHHH-CTTCCHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHhC----C-CCCCceEEEEe--ccCCEEEEEEcCCCCcHHHHHhh-ccCCCHHHHHHHHHHHHHHH
Confidence               11456677666554    2 3333 332222  24567999999999999987542 233565555554433  448


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~  527 (766)
                      ..+|+.|++|+|+||.||+++.  ++.++++|||+++.+.........   .....+.+.+++|+....+..++.+|+++
T Consensus       121 ~ylH~~~iiHrDlKp~Nill~~--~~~~kl~DFGla~~~~~~~~~~~~---~~~~~gt~~y~APE~l~~~~~~~~sDiwS  195 (277)
T d1xbba_         121 KYLEESNFVHRDLAARNVLLVT--QHYAKISDFGLSKALRADENYYKA---QTHGKWPVKWYAPECINYYKFSSKSDVWS  195 (277)
T ss_dssp             HHHHHTTEECSCCSGGGEEEEE--TTEEEECCCTTCEECCTTCSEEEC-------CCCGGGCCHHHHHHCEEEHHHHHHH
T ss_pred             hhHHhCCcccCCCcchhhcccc--cCcccccchhhhhhcccccccccc---ccccCCCceecCchhhcCCCCCchhhhcc
Confidence            8899999999999999999986  899999999999887543221110   01124577899999988887788899999


Q ss_pred             HHHHHHHHH
Q 004234          528 VRRTAQFFL  536 (766)
Q Consensus       528 l~~~i~~~l  536 (766)
                      +...+.+++
T Consensus       196 ~Gv~l~ell  204 (277)
T d1xbba_         196 FGVLMWEAF  204 (277)
T ss_dssp             HHHHHHHHH
T ss_pred             chhhhhHHh
Confidence            998877655

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.1e-18  Score=181.19  Aligned_cols=186  Identities=15%  Similarity=0.121  Sum_probs=117.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||+||+|+.  +|+.||||+.+.+-...                                  ...+      .
T Consensus        10 ~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~----------------------------------~~~~------~   49 (269)
T d2java1          10 YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE----------------------------------AEKQ------M   49 (269)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCH----------------------------------HHHH------H
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCH----------------------------------HHHH------H
Confidence            6899999999999998  59999999885432111                                  0001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHHHH--HHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l---~~~g~d~~~la~~lv~--~~l~q  449 (766)
                      +.+|++.+.++    . +|+| .+-.++.+. ....+|||||++|++|.++...   ....++...+...+.+  ..++.
T Consensus        50 ~~~E~~il~~l----~-HpnIv~~~~~~~~~~~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~y  124 (269)
T d2java1          50 LVSEVNLLREL----K-HPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKE  124 (269)
T ss_dssp             HHHHHHHTTSC----C-CTTBCCEEEEEEC----CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC----C-CCCEeeEEEEEEeCCCCEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            44555554443    2 3332 222223222 3446899999999999986532   1223555554444433  34778


Q ss_pred             HHhCC-----ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004234          450 ILSHG-----FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (766)
Q Consensus       450 I~~~G-----ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D  524 (766)
                      +|..|     ++|||+||.|||++.  +|.++|+|||++..++.....      .....+++.+++|++...+-.++.+|
T Consensus       125 lH~~~~~~~~IiHrDiKp~NIll~~--~~~vkl~DFG~a~~~~~~~~~------~~~~~gt~~Y~APE~l~~~~~~~~~D  196 (269)
T d2java1         125 CHRRSDGGHTVLHRDLKPANVFLDG--KQNVKLGDFGLARILNHDTSF------AKAFVGTPYYMSPEQMNRMSYNEKSD  196 (269)
T ss_dssp             HHHHCC---------CCGGGEEECT--TSCEEECCHHHHHHC-----------------CCCSCCCHHHHTTCCCCHHHH
T ss_pred             HHHhcCCCCCEEeCcCchhhcCcCC--CCcEEEeeccceeecccCCCc------cccCCCCcccCCHHHHcCCCCChHHH
Confidence            88766     999999999999986  899999999999988654321      11234678899999998777777889


Q ss_pred             HHHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFLN  537 (766)
Q Consensus       525 ~~~l~~~i~~~l~  537 (766)
                      ++++.-.+.+++.
T Consensus       197 IwSlGvilyel~t  209 (269)
T d2java1         197 IWSLGCLLYELCA  209 (269)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHhhCHHHHHHhh
Confidence            9999988777653

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.1e-18  Score=177.65  Aligned_cols=181  Identities=15%  Similarity=0.117  Sum_probs=126.3

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|+||+||+|++ +++.||||+.+.+-..                                           +-+|
T Consensus        23 ~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~-------------------------------------------~~~~   59 (285)
T d1fmka3          23 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS-------------------------------------------PEAF   59 (285)
T ss_dssp             EEEEECSSCEEEEEEETTTEEEEEEECCTTSSC-------------------------------------------HHHH
T ss_pred             eEEeeCCCeEEEEEEECCCCEEEEEEECcccCC-------------------------------------------HHHH
Confidence            6899999999999999 6788999988432110                                           0146


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      .+|+.++.+++     +++|  .+.|.- ...+.++||||++|+++.++..... ..++...+...+.+  ..+..+|..
T Consensus        60 ~~E~~~l~~l~-----h~nI--v~~~g~~~~~~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~  132 (285)
T d1fmka3          60 LQEAQVMKKLR-----HEKL--VQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM  132 (285)
T ss_dssp             HHHHHHHHHCC-----CTTB--CCEEEEECSSSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcc-----cCCE--eEEEEEEecCCeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhh
Confidence            67777776653     2332  223321 3456799999999999888654332 34566665554433  458889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|+|+||.||+++.  ++.++|+|||++..+.+.....     .....+.+.+++++....+..++.+|++++.-.+.
T Consensus       133 ~ivH~DlKp~NIll~~--~~~~kl~DfGla~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~  205 (285)
T d1fmka3         133 NYVHRDLRAANILVGE--NLVCKVADFGLARLIEDNEYTA-----RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLT  205 (285)
T ss_dssp             TCCCSCCSGGGEEECG--GGCEEECCCCTTC-------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             heecccccceEEEECC--CCcEEEcccchhhhccCCCcee-----eccccccccccChHHHhCCCCCcHHhhhcchHHHH
Confidence            9999999999999986  7899999999998775543221     11134678889999999888888899999998877


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       206 el~  208 (285)
T d1fmka3         206 ELT  208 (285)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=2.7e-18  Score=182.24  Aligned_cols=182  Identities=18%  Similarity=0.192  Sum_probs=127.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|++|+||+|+.  +|+.||||+.+......                .                 +..+      .
T Consensus        10 ~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~----------------~-----------------~~~~------~   50 (316)
T d1fota_          10 RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVR----------------L-----------------KQVE------H   50 (316)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH----------------T-----------------TCHH------H
T ss_pred             EEEecCcCcEEEEEEECCCCCEEEEEEEchHHccC----------------H-----------------HHHH------H
Confidence            6899999999999998  59999999974321000                0                 0001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~  453 (766)
                      +.+|+..+.++    .+ |+| .+-.++ ......++||||++|+.+.++.... ...+...+....  +...+..+|..
T Consensus        51 ~~~E~~il~~l----~H-pnIv~~~~~~-~~~~~~~ivmE~~~gg~l~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~~  123 (316)
T d1fota_          51 TNDERLMLSIV----TH-PFIIRMWGTF-QDAQQIFMIMDYIEGGELFSLLRKS-QRFPNPVAKFYAAEVCLALEYLHSK  123 (316)
T ss_dssp             HHHHHHHHHSC----CB-TTBCCEEEEE-ECSSEEEEEECCCCSCBHHHHHHHT-SSCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhc----cC-cChhheeeeE-eeCCeeeeEeeecCCcccccccccc-ccccccHHHHHHHHHHHhhhhhccC
Confidence            34455444433    23 333 232332 3356679999999999988865422 233433332222  33457889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~  533 (766)
                      |++|||+||.|||++.  +|.++|+|||++..+.....         ...+++.+++|++..-...++..|++++...++
T Consensus       124 ~iiHrDiKp~NILl~~--~g~vkL~DFG~a~~~~~~~~---------~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvily  192 (316)
T d1fota_         124 DIIYRDLKPENILLDK--NGHIKITDFGFAKYVPDVTY---------TLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIY  192 (316)
T ss_dssp             TEECCCCCGGGEEECT--TSCEEECCCSSCEECSSCBC---------CCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHH
T ss_pred             cEEccccCchheeEcC--CCCEEEecCccceEeccccc---------cccCcccccCHHHHcCCCCCchhhccccchhHH
Confidence            9999999999999985  89999999999998865432         245789999999998766788889999998887


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       193 emlt  196 (316)
T d1fota_         193 EMLA  196 (316)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7664

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.6e-18  Score=176.14  Aligned_cols=182  Identities=14%  Similarity=0.132  Sum_probs=131.4

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|+||.||+|++ ++++||||+.+.+-..                                           +-+|
T Consensus        10 ~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~-------------------------------------------~~~~   46 (258)
T d1k2pa_          10 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS-------------------------------------------EDEF   46 (258)
T ss_dssp             CCCCEETTEEEEEEEETTTEEEEEEEEESSSSC-------------------------------------------HHHH
T ss_pred             EEEecCCCeEEEEEEECCCCEEEEEEECcCcCC-------------------------------------------HHHH
Confidence            5799999999999999 6889999998543111                                           1145


Q ss_pred             HHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          378 TQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      .+|...+.++.     +++| .+-.++ ......++||||++|+.+.+.........+...+...+.+  ..+..+|..|
T Consensus        47 ~~Ev~~~~~l~-----HpnIv~~~g~~-~~~~~~~iv~Ey~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~  120 (258)
T d1k2pa_          47 IEEAKVMMNLS-----HEKLVQLYGVC-TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ  120 (258)
T ss_dssp             HHHHHHHHTCC-----CTTBCCEEEEE-CCSSSEEEEEECCTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcC-----CCceeeEEEEE-eeCCceEEEEEccCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence            66776666552     2332 222222 3346779999999999998876555555665555544433  3488899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  ++.++|+|||++..+.+......     ....++..+++|++...+..++.+|++++.-.+.+
T Consensus       121 iiH~dlk~~Nill~~--~~~~kl~DfG~a~~~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~e  193 (258)
T d1k2pa_         121 FLHRDLAARNCLVND--QGVVKVSDFGLSRYVLDDEYTSS-----VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWE  193 (258)
T ss_dssp             BCCSCCSGGGEEECT--TCCEEECCCSSCCBCSSSSCCCC-----CCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             cccccccceeEEEcC--CCcEEECcchhheeccCCCceee-----cccCCCCCcCCcHHhcCCCCCcceeecccchhhHh
Confidence            999999999999985  88999999999987765433211     01235677889999988888888899999987766


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       194 l~  195 (258)
T d1k2pa_         194 IY  195 (258)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.72  E-value=1.6e-17  Score=173.13  Aligned_cols=196  Identities=14%  Similarity=0.111  Sum_probs=130.6

Q ss_pred             hccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004234          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (766)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (766)
                      +.|+. +.||+|++|+||+|+.  +|+.||||+.+.......                          .. .-..+..  
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~--------------------------~~-~~~~~~~--   53 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSF--------------------------SA-EEVQELR--   53 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTC--------------------------CH-HHHHHHH--
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccch--------------------------hH-HHHHHHH--
Confidence            34443 6899999999999998  699999998754321110                          00 0011111  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHH
Q 004234          371 LYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       371 l~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l  447 (766)
                          -.+.+|+..+.++..    +++| .+-.++ +-....+|||||++|++|.++... ...++...+.....+  ..+
T Consensus        54 ----~~~~~E~~~l~~l~~----hpnIv~~~~~~-~~~~~~~ivmE~~~~g~L~~~l~~-~~~l~e~~~~~~~~qi~~al  123 (277)
T d1phka_          54 ----EATLKEVDILRKVSG----HPNIIQLKDTY-ETNTFFFLVFDLMKKGELFDYLTE-KVTLSEKETRKIMRALLEVI  123 (277)
T ss_dssp             ----HHHHHHHHHHHHHTT----CTTBCCEEEEE-ECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhcC----CCCeEEEEeec-ccCcceEEEEEcCCCchHHHHHHh-cCCCCHHHHHHHHHHHHHHH
Confidence                135567777776642    3333 233333 334566999999999999997643 334565555554433  348


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC------CCCC
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG------VLVP  521 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG------~~~~  521 (766)
                      +.+|..|++|+|+||+||+++.  ++.++|+|||++..+++.....       ...+++.+++++.....      ..++
T Consensus       124 ~~lH~~~ivHrDlkp~Nill~~--~~~~kl~DFG~a~~~~~~~~~~-------~~~gt~~y~~PE~~~~~~~~~~~~~~~  194 (277)
T d1phka_         124 CALHKLNIVHRDLKPENILLDD--DMNIKLTDFGFSCQLDPGEKLR-------EVCGTPSYLAPEIIECSMNDNHPGYGK  194 (277)
T ss_dssp             HHHHHTTEECSCCSGGGEEECT--TCCEEECCCTTCEECCTTCCBC-------CCCSCGGGCCHHHHHHHHCTTSCCBCT
T ss_pred             HHHHHcCCcccccccceEEEcC--CCCeEEccchheeEccCCCcee-------eeeccCCCCCHHHhhccccccCCCCCc
Confidence            8899999999999999999985  8999999999999887643321       12355666666666532      2245


Q ss_pred             CCCHHHHHHHHHHHHH
Q 004234          522 TGDTTAVRRTAQFFLN  537 (766)
Q Consensus       522 ~~D~~~l~~~i~~~l~  537 (766)
                      ..|++++.-.+.+++.
T Consensus       195 ~~DiwslGvilyeml~  210 (277)
T d1phka_         195 EVDMWSTGVIMYTLLA  210 (277)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hheEcccchhhhhhcc
Confidence            5799999988777654

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.8e-18  Score=179.66  Aligned_cols=187  Identities=15%  Similarity=0.086  Sum_probs=118.0

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|+||+||+|++       +|+.||||+.+.+....                                        
T Consensus        19 ~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~----------------------------------------   58 (299)
T d1ywna1          19 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS----------------------------------------   58 (299)
T ss_dssp             EEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHH----------------------------------------
T ss_pred             eEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcH----------------------------------------
Confidence            6899999999999996       24789999874332111                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDR  435 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~  435 (766)
                       .+-.+..|...+.++.    +++.| ..-..+.+-....+++|||++|++|.++.....               ..++.
T Consensus        59 -~~~~~~~e~~~l~~~~----~h~~iv~~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~  133 (299)
T d1ywna1          59 -EHRALMSELKILIHIG----HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTL  133 (299)
T ss_dssp             -HHHHHHHHHHHHHHHC----CCTTBCCEEEEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCH
T ss_pred             -HHHHHHHHHHHHHhhc----CCCeEEEeeeeeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCH
Confidence             0112334444444332    33333 222222222345799999999999999764322               12334


Q ss_pred             HHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004234          436 KRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (766)
Q Consensus       436 ~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l  513 (766)
                      ..+...+.+  ..+..+|..|++|||+||.|||++.  ++.++|+|||+++.+........    .....+++.+++|++
T Consensus       134 ~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NILl~~--~~~~Kl~DFGla~~~~~~~~~~~----~~~~~gt~~y~APE~  207 (299)
T d1ywna1         134 EHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSE--KNVVKICDFGLARDIYKDPDYVR----KGDARLPLKWMAPET  207 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECG--GGCEEECC------CCSCTTSCC----TTSCCCGGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcCCcCCccceeECC--CCcEEEccCcchhhccccccccc----cCceeeCccccchhH
Confidence            444444333  3478899999999999999999986  88999999999987654322110    112346778999999


Q ss_pred             HHcCCCCCCCCHHHHHHHHHHHH
Q 004234          514 VQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       514 ~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ..-+..++.+|++++.-.+.+++
T Consensus       208 l~~~~~~~~sDiwS~Gvil~ell  230 (299)
T d1ywna1         208 IFDRVYTIQSDVWSFGVLLWEIF  230 (299)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCcccceeehHHHHHHHH
Confidence            98888888889999998877665

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=8.1e-18  Score=182.01  Aligned_cols=187  Identities=16%  Similarity=0.135  Sum_probs=125.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||.||+|+.  +|+.||||+..+.-...                                 .      ..+..
T Consensus        10 ~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~---------------------------------~------~~~~~   50 (364)
T d1omwa3          10 RIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKM---------------------------------K------QGETL   50 (364)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------H------TCHHH
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEchHHcch---------------------------------h------hHHHH
Confidence            6899999999999998  59999999873210000                                 0      00112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +.+|...+..+. .+ ++|+|.--.-+.+..+..+|||||++|++|.++... ....+...+...+  +-..+..+|..|
T Consensus        51 ~~~e~~~~~~l~-~~-~hpnIv~l~~~~~~~~~~~ivmE~~~gg~L~~~l~~-~~~~~e~~~~~~~~qi~~aL~ylH~~~  127 (364)
T d1omwa3          51 ALNERIMLSLVS-TG-DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQ-HGVFSEADMRFYAAEIILGLEHMHNRF  127 (364)
T ss_dssp             HHHHHHHHHHHS-SS-CCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh-cC-CCCcEEEEEEEEEECCEEEEEEEecCCCcHHHHHHh-cccccHHHHHHHHHHHHHHHHHHHHCC
Confidence            223332222221 12 233332222222345567999999999999987532 2234444443333  234478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~-~~~~~D~~~l~~~i~  533 (766)
                      ++|||+||+|||++.  +|.++|+|||++..++....        ....+++.+++|+++..+. .++.+|++++...++
T Consensus       128 iiHrDlKP~NILl~~--~g~iKl~DFGla~~~~~~~~--------~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvily  197 (364)
T d1omwa3         128 VVYRDLKPANILLDE--HGHVRISDLGLACDFSKKKP--------HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLF  197 (364)
T ss_dssp             EECCCCSGGGEEECS--SSCEEECCCTTCEECSSSCC--------CSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHH
T ss_pred             ccceeeccceeEEcC--CCcEEEeeeceeeecCCCcc--------cccccccccchhHHhhcCCCCCcccchhHHHHHHH
Confidence            999999999999986  89999999999998876432        1235899999999987654 567789999998888


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       198 emlt  201 (364)
T d1omwa3         198 KLLR  201 (364)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7764

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=5.5e-18  Score=182.37  Aligned_cols=187  Identities=15%  Similarity=0.141  Sum_probs=130.5

Q ss_pred             ccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      .|+. +.||+|+||+||+|+.  +|+.||||+........                   ..      ..           
T Consensus        42 ~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~-------------------~~------~~-----------   85 (350)
T d1rdqe_          42 QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVK-------------------LK------QI-----------   85 (350)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH-------------------TT------CH-----------
T ss_pred             CeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccC-------------------HH------HH-----------
Confidence            4443 6899999999999998  59999999873210000                   00      00           


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                         -.+.+|.+.+..+     ++++|.--.-+.......++||||++|+.+.+... ....++...+...+.+  ..+..
T Consensus        86 ---~~~~~E~~il~~l-----~hpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~l~-~~~~l~e~~~~~i~~qi~~aL~y  156 (350)
T d1rdqe_          86 ---EHTLNEKRILQAV-----NFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLTFEY  156 (350)
T ss_dssp             ---HHHHHHHHHHTTC-----CCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHH-HHCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHc-----CCCcEeecccccccccccccccccccccchhhhHh-hcCCCCHHHHHHHHHHHHHHHHH
Confidence               0234555544433     23443222222234566799999999999988653 2234555555444433  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|..|++|||+||.|||++.  +|.++|+|||++..++....         ...+++.+++|++..-...++.+|++++.
T Consensus       157 LH~~~iiHRDIKP~NILl~~--~g~ikL~DFG~a~~~~~~~~---------~~~Gt~~Y~APE~~~~~~~~~~~DiwSlG  225 (350)
T d1rdqe_         157 LHSLDLIYRDLKPENLLIDQ--QGYIQVTDFGFAKRVKGRTW---------TLCGTPEALAPEIILSKGYNKAVDWWALG  225 (350)
T ss_dssp             HHHTTEECCCCSGGGEEECT--TSCEEECCCTTCEECSSCBC---------CCEECGGGCCHHHHTTCCBCTHHHHHHHH
T ss_pred             HHhCCEecCcCCHHHcccCC--CCCEEeeeceeeeecccccc---------cccCccccCCHHHHcCCCCCccccccchh
Confidence            99999999999999999985  89999999999998875432         24578999999999876677788999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+++++.
T Consensus       226 vilyemlt  233 (350)
T d1rdqe_         226 VLIYEMAA  233 (350)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88877654

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.9e-18  Score=179.89  Aligned_cols=187  Identities=14%  Similarity=0.081  Sum_probs=125.9

Q ss_pred             ccccccceeEEEEEeec--C-----eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK--G-----EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~--G-----~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|+||.||+|++.  +     ..||||+..+.....                                        
T Consensus        43 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------------   82 (325)
T d1rjba_          43 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSS----------------------------------------   82 (325)
T ss_dssp             EEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------------------------------------------
T ss_pred             eEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHH----------------------------------------
Confidence            68999999999999982  2     369999875432111                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc--------------------
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL--------------------  431 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~--------------------  431 (766)
                       ..-.|.+|.+.+.++.    ++++|.--.-+.......+|||||++|++|.++......                    
T Consensus        83 -~~~~~~~E~~~l~~l~----~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (325)
T d1rjba_          83 -EREALMSELKMMTQLG----SHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEED  157 (325)
T ss_dssp             --CHHHHHHHHHHHHHC----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC------------------
T ss_pred             -HHHHHHHHHHHHHHhc----CCCcEeEEEEEEeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccc
Confidence             0123556666665542    234332222222345677999999999999987542211                    


Q ss_pred             --CCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHH
Q 004234          432 --GVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDAD  507 (766)
Q Consensus       432 --g~d~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~  507 (766)
                        .++...+...+.+  ..+..+|..|++|||+||.||+++.  ++.++|+|||+++..........    .....+.+.
T Consensus       158 ~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~Nill~~--~~~~Kl~DFGla~~~~~~~~~~~----~~~~~gt~~  231 (325)
T d1rjba_         158 LNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTH--GKVVKICDFGLARDIMSDSNYVV----RGNARLPVK  231 (325)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEEET--TTEEEECCCGGGSCGGGCTTSEE----ETTEEECGG
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCchhcccccc--CCeEEEeeccccccccCCCceee----eccccCCCc
Confidence              1333333333333  3478899999999999999999985  89999999999987655432110    111235778


Q ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          508 KVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       508 ~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +++|+.+..+..++.+|++++.-.+.+++
T Consensus       232 y~aPE~l~~~~~~~~~DiwS~Gvil~eml  260 (325)
T d1rjba_         232 WMAPESLFEGIYTIKSDVWSYGILLWEIF  260 (325)
T ss_dssp             GCCHHHHHHCCCCHHHHHHHHHHHHHHHT
T ss_pred             cCChHHHcCCCCCcceeccchhHHHHHHH
Confidence            99999988888888889999998877665

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5e-18  Score=181.96  Aligned_cols=186  Identities=15%  Similarity=0.123  Sum_probs=127.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|+||+||+|+.  +|+.||||+.+....                ...                 +.      .-.
T Consensus        11 ~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~----------------~~~-----------------~~------~~~   51 (337)
T d1o6la_          11 KLLGKGTFGKVILVREKATGRYYAMKILRKEVI----------------IAK-----------------DE------VAH   51 (337)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH----------------HHT-----------------TC------HHH
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEchhhc----------------cCH-----------------HH------HHH
Confidence            6899999999999998  699999999832100                000                 00      012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~~G  454 (766)
                      +.+|.+.+.++     ++|+|.--.-+.+-....++||||++|+.|.++... ...++...+.....  -..+..+|..|
T Consensus        52 ~~~E~~il~~l-----~hp~Iv~l~~~~~~~~~~~iv~ey~~gg~L~~~~~~-~~~~~e~~~~~~~~qil~al~ylH~~~  125 (337)
T d1o6la_          52 TVTESRVLQNT-----RHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSR-ERVFTEERARFYGAEIVSALEYLHSRD  125 (337)
T ss_dssp             HHHHHHHHHSC-----CCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC-----CCCCEEEEEeeeccccccccceeccCCCchhhhhhc-ccCCcHHHHHHHHHHHhhhhhhhhhcC
Confidence            34455544433     234332222222334567999999999999886532 23344443333322  23478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|||+||.|||++.  +|.++|+|||+++.+......      .....+++.+++|++..-.-.++.+|++++.-.+++
T Consensus       126 iiHRDlKP~NILl~~--~g~vkl~DFG~a~~~~~~~~~------~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilye  197 (337)
T d1o6la_         126 VVYRDIKLENLMLDK--DGHIKITDFGLCKEGISDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE  197 (337)
T ss_dssp             CBCCCCCGGGEEECT--TSCEEECCCTTCBCSCCTTCC------BCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHH
T ss_pred             ccccccCHHHeEecC--CCCEEEeecccccccccCCcc------cccceeCHHHhhhhhccCCCCChhhcccchhhHHHH
Confidence            999999999999986  899999999999877543211      112357899999999887777888999999998887


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       198 ml~  200 (337)
T d1o6la_         198 MMC  200 (337)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.4e-17  Score=174.10  Aligned_cols=190  Identities=17%  Similarity=0.143  Sum_probs=130.2

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||.||+|+.  +|+.||||+........                    .  .....              .-+
T Consensus        16 ~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~--------------------~--~~~~~--------------~~~   59 (293)
T d1jksa_          16 EELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKS--------------------S--RRGVS--------------RED   59 (293)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTT--------------------C--SSSBC--------------HHH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcch--------------------h--hhhHH--------------HHH
Confidence            6799999999999998  59999999875332111                    0  00000              113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|++.+.++.     +++|.--.-+.+..+..+|||||++|++|.++... ...++...+...+.+  ..+..+|..|
T Consensus        60 ~~~E~~il~~l~-----HpnIv~~~~~~~~~~~~~iv~E~~~gg~L~~~i~~-~~~l~~~~~~~~~~qi~~al~yLH~~~  133 (293)
T d1jksa_          60 IEREVSILKEIQ-----HPNVITLHEVYENKTDVILILELVAGGELFDFLAE-KESLTEEEATEFLKQILNGVYYLHSLQ  133 (293)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-----CCCCCcEEEEEEECCEEEEEEEcCCCccccchhcc-ccccchhHHHHHHHHHHHHHHhhhhcc
Confidence            456666665542     34332222223445667999999999999987542 234555554443332  3488899999


Q ss_pred             ccccCCCCCcEEEeecC--CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~--~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      ++|+|+||.||+++..+  ...++++|||++..++.....       ....+++.+++|++..-+..++..|++++...+
T Consensus       134 ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~-------~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvil  206 (293)
T d1jksa_         134 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEF-------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVIT  206 (293)
T ss_dssp             EECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCBC-------SCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHH
T ss_pred             eeecccccceEEEecCCCcccceEecchhhhhhcCCCccc-------cccCCCCcccCHHHHcCCCCCCcccchhhhHHH
Confidence            99999999999997511  125999999999988654321       123567889999999887778889999999887


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       207 yell~  211 (293)
T d1jksa_         207 YILLS  211 (293)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            77654

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.2e-18  Score=178.98  Aligned_cols=193  Identities=14%  Similarity=0.071  Sum_probs=126.7

Q ss_pred             hhhhhhccCcccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHH
Q 004234          289 LDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (766)
Q Consensus       289 ~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E  366 (766)
                      .+.-|-.|+. -||+|+||.||+|+.  +|+.||||+....-..                                  +.
T Consensus         6 ~~gry~~~~~-~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~----------------------------------~~   50 (270)
T d1t4ha_           6 NDGRFLKFDI-EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT----------------------------------KS   50 (270)
T ss_dssp             TTSCEEEEEE-EEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC----------------------------------HH
T ss_pred             CCCCEEEeee-EEecCcCcEEEEEEECCCCeEEEEEEEchhhCC----------------------------------HH
Confidence            3333444543 599999999999998  5899999987332100                                  00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH
Q 004234          367 CASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV  443 (766)
Q Consensus       367 ~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv  443 (766)
                      -.      -+|.+|++.+.++    .+..-|.+-.++....   ...+|||||++|++|.++... ...++...+...+.
T Consensus        51 ~~------~~~~~E~~il~~l----~HpnIv~~~~~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~-~~~~~~~~~~~~~~  119 (270)
T d1t4ha_          51 ER------QRFKEEAEMLKGL----QHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKR-FKVMKIKVLRSWCR  119 (270)
T ss_dssp             HH------HHHHHHHHHHTTC----CCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHH
T ss_pred             HH------HHHHHHHHHHHhC----CCCCeeeEEEEEeeccccCCEEEEEEeCCCCCcHHHHHhc-cccccHHHHHHHHH
Confidence            01      1355666655443    2222222322222211   234899999999999987532 22345444433332


Q ss_pred             H--HHHHHHHhCC--ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004234          444 E--SYLEQILSHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  519 (766)
Q Consensus       444 ~--~~l~qI~~~G--ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~  519 (766)
                      +  ..+..+|..|  ++|||+||+|||++. +++.++|+|||++.........        -..+++.+++|++..-. .
T Consensus       120 qi~~gl~yLH~~~~~IiHrDiKp~NILl~~-~~~~~Kl~DFGla~~~~~~~~~--------~~~GT~~Y~aPE~~~~~-~  189 (270)
T d1t4ha_         120 QILKGLQFLHTRTPPIIHRDLKCDNIFITG-PTGSVKIGDLGLATLKRASFAK--------AVIGTPEFMAPEMYEEK-Y  189 (270)
T ss_dssp             HHHHHHHHHHTSSSCCCCSCCCGGGEEESS-TTSCEEECCTTGGGGCCTTSBE--------ESCSSCCCCCGGGGGTC-C
T ss_pred             HHHHHHHHHHHCCCCEEeCCcChhhceeeC-CCCCEEEeecCcceeccCCccC--------CcccCccccCHHHhCCC-C
Confidence            2  3477889988  999999999999974 4789999999999866543321        13468889999988654 6


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 004234          520 VPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       520 ~~~~D~~~l~~~i~~~l~  537 (766)
                      ++..|++++.-.+.+++.
T Consensus       190 ~~~~DIwSlGvilyel~~  207 (270)
T d1t4ha_         190 DESVDVYAFGMCMLEMAT  207 (270)
T ss_dssp             CTHHHHHHHHHHHHHHHH
T ss_pred             CCcCchhhHHHHHHHHHH
Confidence            778899999988877664

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.2e-17  Score=170.83  Aligned_cols=183  Identities=16%  Similarity=0.150  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEeec-----CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-----G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +.||+|+||+||+|++.     +..||||+.++...+.                                         .
T Consensus        13 ~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~-----------------------------------------~   51 (273)
T d1mp8a_          13 RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDS-----------------------------------------V   51 (273)
T ss_dssp             EEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHH-----------------------------------------H
T ss_pred             EEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHH-----------------------------------------H
Confidence            68999999999999982     3568888774332111                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      .-.|.+|+..+.++    . +|+|  .++|..+ .+..++||||++|+.+.++.......++...+...+.+  ..+..+
T Consensus        52 ~~~~~~E~~~l~~l----~-HpnI--v~l~~~~~~~~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~yl  124 (273)
T d1mp8a_          52 REKFLQEALTMRQF----D-HPHI--VKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYL  124 (273)
T ss_dssp             HHHHHHHHHHHHTC----C-CTTB--CCEEEEECSSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----C-CCCE--eeEEEEEecCeEEEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhh
Confidence            11456677666554    2 3332  2233222 35679999999999998865444445666555544433  348889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|+||.||+++.  ++.++++|||++..++......     .....+.+.+++++....+..++.+|++++.-
T Consensus       125 H~~~iiHrDlKp~NIll~~--~~~~Kl~DfG~a~~~~~~~~~~-----~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGv  197 (273)
T d1mp8a_         125 ESKRFVHRDIAARNVLVSS--NDCVKLGDFGLSRYMEDSTYYK-----ASKGKLPIKWMAPESINFRRFTSASDVWMFGV  197 (273)
T ss_dssp             HHTTCCCSCCSGGGEEEEE--TTEEEECC------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHH
T ss_pred             cccCeeccccchhheeecC--CCcEEEccchhheeccCCccee-----ccceecCcccchhhHhccCCCCCccccccchH
Confidence            9999999999999999987  8999999999998876543221     11224567889999998888888889999998


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       198 il~e~l  203 (273)
T d1mp8a_         198 CMWEIL  203 (273)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877665

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=1e-17  Score=175.84  Aligned_cols=186  Identities=18%  Similarity=0.091  Sum_probs=130.3

Q ss_pred             ccccccceeEEEEEeec-------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|+||.||+|++.       |+.||||+.++.....                                        
T Consensus        19 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~----------------------------------------   58 (301)
T d1lufa_          19 RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASAD----------------------------------------   58 (301)
T ss_dssp             EEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHH----------------------------------------
T ss_pred             EEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChH----------------------------------------
Confidence            57999999999999873       4789999875432211                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------------
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------------  430 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------------  430 (766)
                       .+-+|.+|+..+.++     +++++.-..-+.......+++|||+++++|.++.....                     
T Consensus        59 -~~~~~~~E~~il~~l-----~h~niv~~~~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  132 (301)
T d1lufa_          59 -MQADFQREAALMAEF-----DNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSP  132 (301)
T ss_dssp             -HHHHHHHHHHHHHTC-----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC--------------------
T ss_pred             -HHHHHHHHHHHHHhc-----CCCCcccceeeeccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhcccc
Confidence             122456677666554     23444433444445677899999999999998653211                     


Q ss_pred             --cCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCH
Q 004234          431 --LGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDA  506 (766)
Q Consensus       431 --~g~d~~~la~~l--v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~  506 (766)
                        ..++...+...+  +...++.+|..|++|+|+||.||+++.  ++.++|+|||+++.+.+......    .+...+.+
T Consensus       133 ~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlKp~NILld~--~~~~Kl~DFGls~~~~~~~~~~~----~~~~~~~~  206 (301)
T d1lufa_         133 GPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGE--NMVVKIADFGLSRNIYSADYYKA----DGNDAIPI  206 (301)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCCSCHHHHTGGGCBC--------CCBCG
T ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEEcccceEECC--CCcEEEccchhheeccCCccccc----cCCCCcCc
Confidence              113333333222  334578899999999999999999986  88999999999987765543222    12234667


Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          507 DKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       507 ~~v~~~l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      .++++++...+..++.+|+++|.-.+.+++
T Consensus       207 ~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell  236 (301)
T d1lufa_         207 RWMPPESIFYNRYTTESDVWAYGVVLWEIF  236 (301)
T ss_dssp             GGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHccCCCChhhhhccchhhHHHHH
Confidence            899999999888888899999998877665

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.69  E-value=8e-18  Score=176.17  Aligned_cols=190  Identities=15%  Similarity=0.151  Sum_probs=126.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||+||+|+.  +|+.||||+.......                              .              .
T Consensus        11 ~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~------------------------------~--------------~   46 (293)
T d1csna_          11 RRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA------------------------------P--------------Q   46 (293)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEECCTTS------------------------------C--------------C
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEccccCc------------------------------H--------------H
Confidence            5899999999999998  6999999987322110                              0              1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +..|.+.+..+.    +.+++..-.-+.......++||||+ |++|.++.......++.......+.+  ..++.+|..|
T Consensus        47 ~~~e~~~~~~l~----~~~~i~~~~~~~~~~~~~~~vme~~-~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~g  121 (293)
T d1csna_          47 LRDEYRTYKLLA----GCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKS  121 (293)
T ss_dssp             HHHHHHHHHHTT----TCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhc----CCCCCCEEEEEeecCCccEEEEEec-CCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCC
Confidence            233444333332    3333333333445567789999999 56777765444444555554444433  3488999999


Q ss_pred             ccccCCCCCcEEEeec---CCCcEEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          455 FFHADPHPGNIAVDDV---NGGRLIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       455 ffHaDpHPGNILV~~~---~~g~l~LiDFGlv~~L~~~~r~~l~~-l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      ++|||+||+||+++..   +++.++++|||++..+.......... .......+++.+++++.......++..|++++..
T Consensus       122 iiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~  201 (293)
T d1csna_         122 LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGH  201 (293)
T ss_dssp             EECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHH
T ss_pred             ceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhH
Confidence            9999999999999741   35789999999998775432110000 0011234788999999987766777789999998


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       202 ~l~ellt  208 (293)
T d1csna_         202 VFMYFLR  208 (293)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8777654

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5e-17  Score=171.89  Aligned_cols=184  Identities=15%  Similarity=0.112  Sum_probs=125.9

Q ss_pred             ccccccceeEEEEEee--cCe----eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~----~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      +.||+|+||+||+|++  +|+    +||||..++.....                                         
T Consensus        15 ~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------------   53 (317)
T d1xkka_          15 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK-----------------------------------------   53 (317)
T ss_dssp             EEEEECSSEEEEEEEECC----CCEEEEEEEECC----C-----------------------------------------
T ss_pred             eEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHH-----------------------------------------
Confidence            6899999999999998  455    58888764432111                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                      .+-.|.+|++.+.+++     +|+| .+-.++  .....+++|||+.|+.+.+........++...+...+.+  ..+..
T Consensus        54 ~~~~~~~E~~~l~~l~-----HpnIv~l~g~~--~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~y  126 (317)
T d1xkka_          54 ANKEILDEAYVMASVD-----NPHVCRLLGIC--LTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNY  126 (317)
T ss_dssp             THHHHHHHHHHHHHCC-----CTTBCCEEEEE--ESSSEEEEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC-----CCCEeeEEEEE--ecCCeeEEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHH
Confidence            0113566776666542     2332 222222  246678999999999998865544445665555444333  45888


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~  529 (766)
                      +|.+|++|+|+||.||+++.  ++.++|+|||++..+..........    ...+++.+++++...-+..++.+|++++.
T Consensus       127 LH~~~iiHrDlKp~NIll~~--~~~~kl~DFGla~~~~~~~~~~~~~----~~~gt~~y~APE~l~~~~~~~~sDvwS~G  200 (317)
T d1xkka_         127 LEDRRLVHRDLAARNVLVKT--PQHVKITDFGLAKLLGAEEKEYHAE----GGKVPIKWMALESILHRIYTHQSDVWSYG  200 (317)
T ss_dssp             HHHTTCCCSCCCGGGEEEEE--TTEEEECCCSHHHHTTTTCC------------CCTTTSCHHHHHHCCCCHHHHHHHHH
T ss_pred             HHHcCcccCcchhhcceeCC--CCCeEeeccccceeccccccccccc----ccccCccccChHHHhcCCCChhhhhhhHH
Confidence            99999999999999999986  8899999999999876544332221    12457789999988888888889999999


Q ss_pred             HHHHHHH
Q 004234          530 RTAQFFL  536 (766)
Q Consensus       530 ~~i~~~l  536 (766)
                      ..+.+++
T Consensus       201 vil~el~  207 (317)
T d1xkka_         201 VTVWELM  207 (317)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877665

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.1e-17  Score=171.48  Aligned_cols=187  Identities=17%  Similarity=0.133  Sum_probs=128.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||.||+|+.  +|+.||||+.+++....                .                ++..       .
T Consensus         8 ~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~----------------~----------------~~~~-------~   48 (320)
T d1xjda_           8 KMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLM----------------D----------------DDVE-------C   48 (320)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHH----------------T----------------TCHH-------H
T ss_pred             eEEecCCCcEEEEEEECCCCCEEEEEEEchhhccC----------------h----------------HHHH-------H
Confidence            6899999999999999  69999999984321000                0                0000       1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +..|...+.   ..+ ++|+|.--.-+.+.....+|||||++|++|.++... ...++...+.....+  ..++.+|..|
T Consensus        49 ~~~e~~~l~---~~~-~hp~Iv~~~~~~~~~~~~yivmEy~~~g~L~~~i~~-~~~~~e~~~~~~~~qi~~al~ylH~~~  123 (320)
T d1xjda_          49 TMVEKRVLS---LAW-EHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQS-CHKFDLSRATFYAAEIILGLQFLHSKG  123 (320)
T ss_dssp             HHHHHHHHH---HHT-TCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHH---HhC-CCCcEEEEEEEEccCCceeEEEeecCCCcHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            222322221   122 234332222223445667999999999999997542 234555444443333  3488899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.|||++.  +|+++++|||++..+......      .....+.+.+++++++..+..++.+|++++...+.+
T Consensus       124 iiHrDikp~NiL~~~--~~~~kl~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilye  195 (320)
T d1xjda_         124 IVYRDLKLDNILLDK--DGHIKIADFGMCKENMLGDAK------TNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYE  195 (320)
T ss_dssp             CBCCCCCGGGEEECT--TSCEEECCCTTCBCCCCTTCC------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHH
T ss_pred             eeeccCcccceeecC--CCceeccccchhhhccccccc------ccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHH
Confidence            999999999999985  899999999999877543221      112356888999999988888888999999988877


Q ss_pred             HHH
Q 004234          535 FLN  537 (766)
Q Consensus       535 ~l~  537 (766)
                      ++.
T Consensus       196 mlt  198 (320)
T d1xjda_         196 MLI  198 (320)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4e-17  Score=168.70  Aligned_cols=178  Identities=14%  Similarity=0.132  Sum_probs=118.6

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||.|+||.||+|+++|+.||||+.+..-.                                      .+      +|.
T Consensus        13 ~~lG~G~fg~Vy~~~~~~~~vAvK~i~~~~~--------------------------------------~~------~~~   48 (262)
T d1byga_          13 QTIGKGEFGDVMLGDYRGNKVAVKCIKNDAT--------------------------------------AQ------AFL   48 (262)
T ss_dssp             EEEEECSSCEEEEEEETTEEEEEEECCCCC----------------------------------------H------HHH
T ss_pred             EEEecCCCeEEEEEEECCeEEEEEEECcHHH--------------------------------------HH------HHH
Confidence            5799999999999999999999998742110                                      01      244


Q ss_pred             HHHHHHHHHHHhcCCCCccccce-eeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHH--HHHHHHHHhCC
Q 004234          379 QEAANAELFASNFKDMDYVKVPT-IFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESYLEQILSHG  454 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~vP~-v~~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~lv--~~~l~qI~~~G  454 (766)
                      +|++.+.++    . +++|.-.. +..+-....+|||||++|++|.++..... ..++...+...+.  ...+..+|..|
T Consensus        49 ~E~~~l~~l----~-HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~  123 (262)
T d1byga_          49 AEASVMTQL----R-HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN  123 (262)
T ss_dssp             HTHHHHTTC----C-CTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhC----C-CCCEeeEEEEEEecCCcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCc
Confidence            555544433    2 34332222 22222344689999999999999754322 2345444443333  33478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i~~  534 (766)
                      ++|+|+||.||+++.  +|.++++|||+++..++....         ..++..+++|++...+..++.+|+++|.-.+.+
T Consensus       124 ivH~dlkp~Nil~~~--~~~~kl~dfg~s~~~~~~~~~---------~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~e  192 (262)
T d1byga_         124 FVHRDLAARNVLVSE--DNVAKVSDFGLTKEASSTQDT---------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWE  192 (262)
T ss_dssp             CCCSCCSGGGEEECT--TSCEEECCCCC---------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             eeccccchHhheecC--CCCEeecccccceecCCCCcc---------ccccccCCChHHHhCCCCChHHHHHhHHHHHHH
Confidence            999999999999986  899999999999877654322         235677888998888888888999999988877


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       193 l~  194 (262)
T d1byga_         193 IY  194 (262)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.9e-17  Score=173.19  Aligned_cols=188  Identities=16%  Similarity=0.100  Sum_probs=120.6

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||+||+|+.  +|+.||||+.+.......                               -+++.+      .
T Consensus         4 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~-------------------------------~~~~~~------~   46 (299)
T d1ua2a_           4 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEA-------------------------------KDGINR------T   46 (299)
T ss_dssp             EEEEEETTEEEEEEECSSCCSEEEEEEC-------------------------------------------CT------H
T ss_pred             eEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhh-------------------------------hHHHHH------H
Confidence            4699999999999998  599999998743211110                               001111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~l~qI~~~G  454 (766)
                      +.+|+..+.++    . +++|.--.-+....+..+|||||++|..+..+.. ....++...+...+  +-..++.+|..|
T Consensus        47 ~~~Ei~il~~l----~-hpnIv~~~~~~~~~~~~~ivmE~~~~~~~~~~~~-~~~~l~~~~~~~~~~qil~aL~~lH~~~  120 (299)
T d1ua2a_          47 ALREIKLLQEL----S-HPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKD-NSLVLTPSHIKAYMLMTLQGLEYLHQHW  120 (299)
T ss_dssp             HHHHHHHHHHC----C-CTTBCCEEEEECCTTCCEEEEECCSEEHHHHHTT-CCSSCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCCEeEEEeeeccCCceeehhhhhcchHHhhhhh-cccCCCHHHHHHHHHHHHHHHHHhhccc
Confidence            44455544444    2 3333222222244566799999999987766542 12223333332222  334588899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||+||+++.  ++.++|+|||++..++......      ....+++.++++++...+ ..+..+|++++.-.+.
T Consensus       121 iiHrDiKp~NIli~~--~~~~KL~DFG~a~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~  192 (299)
T d1ua2a_         121 ILHRDLKPNNLLLDE--NGVLKLADFGLAKSFGSPNRAY------THQVVTRWYRAPELLFGARMYGVGVDMWAVGCILA  192 (299)
T ss_dssp             CCCCCCCGGGEEECT--TCCEEECCCGGGSTTTSCCCCC------CCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHH
T ss_pred             eecccCCcceEEecC--CCccccccCccccccCCCcccc------cceecChhhccHHHHccCCCCChhhhhhhcchHHH
Confidence            999999999999985  8999999999998876543211      012356778889887654 3466779999998877


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       193 el~~  196 (299)
T d1ua2a_         193 ELLL  196 (299)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7653

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.1e-17  Score=172.10  Aligned_cols=187  Identities=15%  Similarity=0.100  Sum_probs=131.3

Q ss_pred             ccccccceeEEEEEee-------cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|+||.||+|++       +++.||||+.+++....                                        
T Consensus        29 ~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~----------------------------------------   68 (311)
T d1t46a_          29 KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLT----------------------------------------   68 (311)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHH----------------------------------------
T ss_pred             eEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHH----------------------------------------
Confidence            5899999999999986       25789999986543211                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-----------------cCCC
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-----------------LGVD  434 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~-----------------~g~d  434 (766)
                       .+..|.+|+..+.++    .++++|.--.-+.......+|+|||++|+++.++.....                 ..++
T Consensus        69 -~~~~~~~E~~~~~~l----~~HpnIv~~~g~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  143 (311)
T d1t46a_          69 -EREALMSELKVLSYL----GNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALD  143 (311)
T ss_dssp             -HHHHHHHHHHHHHHH----CCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCC
T ss_pred             -HHHHHHHHHHHHHhc----cCCCCEEEEEEEEeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCC
Confidence             123466677666655    234544322223333456799999999999998653221                 1234


Q ss_pred             HHHHHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004234          435 RKRLGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  512 (766)
Q Consensus       435 ~~~la~~lv--~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~  512 (766)
                      ...+...+.  ...+..+|.+|++|+|+||.||+++.  ++.++++|||+++.+........    .....+.+.+++++
T Consensus       144 ~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl~~~--~~~~ki~DfG~~~~~~~~~~~~~----~~~~~gt~~y~aPE  217 (311)
T d1t46a_         144 LEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTH--GRITKICDFGLARDIKNDSNYVV----KGNARLPVKWMAPE  217 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEET--TTEEEECCCGGGSCTTSCTTSEE----CSSSEECGGGCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeecccccccccccc--cCcccccccchheeccCCCcceE----eeecccChHHcCHH
Confidence            344333333  23478899999999999999999985  88999999999998765433211    12234678899999


Q ss_pred             HHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          513 MVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       513 l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      +...+..++..|+++|...+.+++
T Consensus       218 ~~~~~~~~~~~DIwS~G~~l~ell  241 (311)
T d1t46a_         218 SIFNCVYTFESDVWSYGIFLWELF  241 (311)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCCcccccchHHHHHHHH
Confidence            998888888899999998777665

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.5e-17  Score=172.56  Aligned_cols=186  Identities=16%  Similarity=0.127  Sum_probs=122.9

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||.||+|+.  +|+.||||+.+......                                  +..      -.
T Consensus         8 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~----------------------------------~~~------~~   47 (298)
T d1gz8a_           8 EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE----------------------------------GVP------ST   47 (298)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEC-----------------------------------------CC------HH
T ss_pred             cEEecCcCeEEEEEEECCCCCEEEEEEEehhhcCh----------------------------------HHH------HH
Confidence            6799999999999998  59999999874321100                                  000      13


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|.+.+.++    . +++|.--.-+....+..++||||++|..+.........+++...+...+.+  ..++.+|+.|
T Consensus        48 ~~~Ei~il~~l----~-Hp~Iv~~~~~~~~~~~~~iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~  122 (298)
T d1gz8a_          48 AIREISLLKEL----N-HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR  122 (298)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCcEEEeccccccccceeEEEeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCC
Confidence            44455544433    2 333322222224456779999999987655543333445666655555443  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~~i~  533 (766)
                      ++|||+||+||+++.  ++.++++|||++...+.....      .....+.+.++++++.... ..+..+|++++...+.
T Consensus       123 IiHrDiKpeNIl~~~--~~~~kl~DFG~a~~~~~~~~~------~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily  194 (298)
T d1gz8a_         123 VLHRDLKPQNLLINT--EGAIKLADFGLARAFGVPVRT------YTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFA  194 (298)
T ss_dssp             CCCSCCCGGGEEECT--TSCEEECSTTHHHHHCCCSBC------TTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHH
T ss_pred             EEccccCchheeecc--cCcceeccCCcceeccCCccc------ceeecccceeeehhhhccccCCCccccccccchhhh
Confidence            999999999999985  889999999999776543221      1112466778888876554 3466789999998877


Q ss_pred             HHHH
Q 004234          534 FFLN  537 (766)
Q Consensus       534 ~~l~  537 (766)
                      +++.
T Consensus       195 ~m~~  198 (298)
T d1gz8a_         195 EMVT  198 (298)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            6653

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.2e-17  Score=171.25  Aligned_cols=186  Identities=16%  Similarity=0.080  Sum_probs=128.7

Q ss_pred             ccccccceeEEEEEeec-------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      +.||+|+||.||+|++.       ++.||||+.++.....                                        
T Consensus        26 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~----------------------------------------   65 (308)
T d1p4oa_          26 RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR----------------------------------------   65 (308)
T ss_dssp             EEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHH----------------------------------------
T ss_pred             eEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChH----------------------------------------
Confidence            67999999999999873       5789999875332111                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------cCCCHHHHHHHH
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------LGVDRKRLGRYA  442 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------~g~d~~~la~~l  442 (766)
                       .+..|.+|+..+.++     ++++|.-..-+.......++||||++|++|.++.....         ...+...+...+
T Consensus        66 -~~~~~~~E~~il~~l-----~h~nIv~~~~~~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  139 (308)
T d1p4oa_          66 -ERIEFLNEASVMKEF-----NCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMA  139 (308)
T ss_dssp             -HHHHHHHHHHHGGGC-----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHc-----CCCCEeeeeeEEecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHH
Confidence             123566677665544     23433322223344567899999999999998653221         112334443333


Q ss_pred             H--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004234          443 V--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (766)
Q Consensus       443 v--~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~  520 (766)
                      .  ...+..+|..+++|+|+||.|||++.  +++++|+|||++..+........    .....+.+.+++++....+..+
T Consensus       140 ~~ia~gl~~LH~~~ivHrDlk~~NiLld~--~~~~Kl~DFGla~~~~~~~~~~~----~~~~~~t~~y~aPe~l~~~~~~  213 (308)
T d1p4oa_         140 GEIADGMAYLNANKFVHRDLAARNCMVAE--DFTVKIGDFGMTRDIYETDYYRK----GGKGLLPVRWMSPESLKDGVFT  213 (308)
T ss_dssp             HHHHHHHHHHHHTTCBCSCCSGGGEEECT--TCCEEECCTTCCCGGGGGGCEEG----GGSSEECGGGCCHHHHHHCCCC
T ss_pred             HHHHHHHHHHhhCCeeeceEcCCceeecC--CceEEEeecccceeccCCcceee----ccceecccccCCHHHHccCCCC
Confidence            2  24578899999999999999999985  88999999999987755432111    1112457889999999888888


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFFL  536 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~l  536 (766)
                      +..|++++.-.+.+++
T Consensus       214 ~~~Dv~S~G~il~El~  229 (308)
T d1p4oa_         214 TYSDVWSFGVVLWEIA  229 (308)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHH
Confidence            8889999998776665

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=2.5e-17  Score=172.14  Aligned_cols=190  Identities=16%  Similarity=0.096  Sum_probs=125.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||.||+|++  +|+.||||+.+......                                            .
T Consensus        13 ~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~--------------------------------------------~   48 (299)
T d1ckia_          13 RKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHP--------------------------------------------Q   48 (299)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEESCTTSC--------------------------------------------C
T ss_pred             EEEeeCCCcEEEEEEECCCCCEEEEEEEchhccCH--------------------------------------------H
Confidence            6799999999999998  59999999874321110                                            1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +..|++.+..+    .+.+.|..-..+....+..++||||++|. +.+........++...+...+.+  ..++.+|..|
T Consensus        49 ~~~E~~i~~~l----~~~~~i~~~~~~~~~~~~~~ivme~~~~~-l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~  123 (299)
T d1ckia_          49 LHIESKIYKMM----QGGVGIPTIRWCGAEGDYNVMVMELLGPS-LEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN  123 (299)
T ss_dssp             HHHHHHHHHHS----TTSTTCCCEEEEEEETTEEEEEEECCCCB-HHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHc----cCCCcccEEEEEEecCCEEEEEEEEcCCc-hhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence            23344433333    33444444444445566789999999665 44433333445666665555444  3488999999


Q ss_pred             ccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (766)
Q Consensus       455 ffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~-l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~~i  532 (766)
                      ++|||+||+||++... .+..++++|||++..+.......... .-.....+++.+++++...-...++.+|++++...+
T Consensus       124 iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l  203 (299)
T d1ckia_         124 FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVL  203 (299)
T ss_dssp             EECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHH
T ss_pred             eeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHH
Confidence            9999999999998631 24579999999999875432110000 000112467888999988766667778999999877


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       204 ~el~t  208 (299)
T d1ckia_         204 MYFNL  208 (299)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66653

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.3e-17  Score=170.35  Aligned_cols=187  Identities=14%  Similarity=0.085  Sum_probs=124.4

Q ss_pred             ccccccceeEEEEEeec---------CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~---------G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (766)
                      +.||+|+||+||+|+..         +..||||+.+++..+.                                      
T Consensus        19 ~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~--------------------------------------   60 (299)
T d1fgka_          19 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK--------------------------------------   60 (299)
T ss_dssp             EECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHH--------------------------------------
T ss_pred             eEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChH--------------------------------------
Confidence            68999999999999872         2479999986654322                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCC
Q 004234          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVD  434 (766)
Q Consensus       370 ~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d  434 (766)
                         ..-++.+|...+.++.    .+++|.--.-+.......++||||++|+++.++.....               ..++
T Consensus        61 ---~~~~~~~e~~~l~~~~----~HpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~  133 (299)
T d1fgka_          61 ---DLSDLISEMEMMKMIG----KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLS  133 (299)
T ss_dssp             ---HHHHHHHHHHHHHHHC----CCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCC
T ss_pred             ---HHHHHHHHHHHHHHhc----CCCeEEecccccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCC
Confidence               0123555666555542    23443222222233566899999999999999764322               1234


Q ss_pred             HHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004234          435 RKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  512 (766)
Q Consensus       435 ~~~la~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~  512 (766)
                      ...+.....+  ..++.+|..|++|||+||.|||++.  ++.++|.|||++..++.......    .....+.+.+++++
T Consensus       134 ~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiLl~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE  207 (299)
T d1fgka_         134 SKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTE--DNVMKIADFGLARDIHHIDYYKK----TTNGRLPVKWMAPE  207 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECT--TCCEEECSTTCCCCGGGCCTTCC----CTTSCCGGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhCCEEeeeecccceeecC--CCCeEeccchhhccccccccccc----cccCCCChhhhhhh
Confidence            4444433332  3477899999999999999999986  88999999999998765432211    11123566788999


Q ss_pred             HHHcCCCCCCCCHHHHHHHHHHHH
Q 004234          513 MVQMGVLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       513 l~~lG~~~~~~D~~~l~~~i~~~l  536 (766)
                      ....+..++..|+++|.-.+.+++
T Consensus       208 ~l~~~~y~~k~DiwS~Gvvl~ell  231 (299)
T d1fgka_         208 ALFDRIYTHQSDVWSFGVLLWEIF  231 (299)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCchhhhHHhHHHHHHhc
Confidence            888888888899999998877765

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.3e-17  Score=170.20  Aligned_cols=196  Identities=14%  Similarity=0.108  Sum_probs=130.0

Q ss_pred             hhhhhccCcccccccceeEEEEEee-c--C--eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHH
Q 004234          290 DDVFERFDVEPIAAASLGQVHRARL-K--G--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIY  364 (766)
Q Consensus       290 eeiF~~fd~~PIgsaSiGQVhrA~l-~--G--~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~  364 (766)
                      +.....|+ +.||+|+||.||+|++ +  |  ..||||+.+......                                 
T Consensus        25 ~~~~~~~~-~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~---------------------------------   70 (311)
T d1r0pa_          25 SSLIVHFN-EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---------------------------------   70 (311)
T ss_dssp             GGEEEEEE-EEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHH---------------------------------
T ss_pred             HHceeccc-eEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHH---------------------------------
Confidence            33333454 5699999999999998 2  2  368899874221100                                 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH
Q 004234          365 DECASVLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV  443 (766)
Q Consensus       365 ~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv  443 (766)
                              ..-+|.+|++.+.++    .+ ++| .+-....+.....++||||++|+++.++........+.......+.
T Consensus        71 --------~~~~~~~E~~~l~~l----~H-pnIv~~~g~~~~~~~~~~lv~E~~~~g~l~~~~~~~~~~~~~~~~~~i~~  137 (311)
T d1r0pa_          71 --------EVSQFLTEGIIMKDF----SH-PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL  137 (311)
T ss_dssp             --------HHHHHHHHHHHHHTC----CC-TTBCCCCEEEEETTTEEEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHhC----CC-CCEeEEeEEEEecCCceEEEEEEeecCchhhhhccccccchHHHHHHHHH
Confidence                    012466677666554    22 333 2222222233467999999999999997654444444444333332


Q ss_pred             H--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004234          444 E--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP  521 (766)
Q Consensus       444 ~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~  521 (766)
                      +  ..+..+|..|++|+|+||.|||++.  ++.++|.|||++..+.........  ...-..+...+++++....+..++
T Consensus       138 qia~gL~~lH~~~iiHrDLK~~NILl~~--~~~~kL~DFG~~~~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~  213 (311)
T d1r0pa_         138 QVAKGMKFLASKKFVHRDLAARNCMLDE--KFTVKVADFGLARDMYDKEFDSVH--NKTGAKLPVKWMALESLQTQKFTT  213 (311)
T ss_dssp             HHHHHHHHHHHTTCCCSCCSGGGEEECT--TCCEEECSSGGGCCTTTTTCCCTT--CTTCSSCCGGGSCHHHHHHCCCCH
T ss_pred             HHHHhhhhhcccCcccCCccHHhEeECC--CCCEEEecccchhhccccccccce--ecccccccccccChHHHhcCCCCC
Confidence            2  3367799999999999999999985  789999999999987654322110  011123567788899888888888


Q ss_pred             CCCHHHHHHHHHHHH
Q 004234          522 TGDTTAVRRTAQFFL  536 (766)
Q Consensus       522 ~~D~~~l~~~i~~~l  536 (766)
                      .+|+++|.-.+.+++
T Consensus       214 ksDI~SfGivl~El~  228 (311)
T d1r0pa_         214 KSDVWSFGVLLWELM  228 (311)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhHhhhhHHHHHHHH
Confidence            889999998777665

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.1e-17  Score=167.56  Aligned_cols=187  Identities=19%  Similarity=0.183  Sum_probs=121.3

Q ss_pred             ccccccceeEEEEEeec---C--eeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLK---G--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~---G--~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (766)
                      +-||+|+||+||+|+++   +  .+||||+..+.....                                 ++.      
T Consensus        14 ~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~---------------------------------~~~------   54 (273)
T d1u46a_          14 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQ---------------------------------PEA------   54 (273)
T ss_dssp             EECC----CCCEEEEEECTTSCEEEEEEEC-----------------------------------------CHH------
T ss_pred             EEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCC---------------------------------HHH------
Confidence            46999999999999972   3  479999874432111                                 000      


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       374 ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      .-+|.+|++.+.++.     +++|  .+.|.- .....++||||++++.+.+........++...+...+.+  ..+..+
T Consensus        55 ~~~~~~Ei~~l~~l~-----H~nI--v~~~g~~~~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~yl  127 (273)
T d1u46a_          55 MDDFIREVNAMHSLD-----HRNL--IRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYL  127 (273)
T ss_dssp             HHHHHHHHHHHHHCC-----CTTB--CCEEEEECSSSCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-----CCCE--EEEEEEEeecchheeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHh
Confidence            114667776666552     2332  233321 234569999999999999866544445666666555544  347889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l~~  530 (766)
                      |..|++|+|+||.||+++.  ++.++++|||++..+.........   .....+...++++++..-+..++.+|+++|.-
T Consensus       128 H~~~iiHrDikp~NIll~~--~~~vkl~DfGl~~~~~~~~~~~~~---~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gv  202 (273)
T d1u46a_         128 ESKRFIHRDLAARNLLLAT--RDLVKIGDFGLMRALPQNDDHYVM---QEHRKVPFAWCAPESLKTRTFSHASDTWMFGV  202 (273)
T ss_dssp             HHTTEECSCCCGGGEEEEE--TTEEEECCCTTCEECCC-CCEEEC--------CCGGGCCHHHHHHCEEEHHHHHHHHHH
T ss_pred             hhCCEeeeeecHHHhcccc--ccceeeccchhhhhcccCCCccee---cCccccCcccCCHHHHhCCCCCcchhhhhhHH
Confidence            9999999999999999987  889999999999988654322111   11122456678888888888888889999998


Q ss_pred             HHHHHH
Q 004234          531 TAQFFL  536 (766)
Q Consensus       531 ~i~~~l  536 (766)
                      .+.+++
T Consensus       203 il~eml  208 (273)
T d1u46a_         203 TLWEMF  208 (273)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877665

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.64  E-value=2.5e-16  Score=166.53  Aligned_cols=177  Identities=17%  Similarity=0.176  Sum_probs=118.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||.|+||+||+|+.  +|+.||||+.++.-.+                                             +
T Consensus        41 ~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~---------------------------------------------~   75 (328)
T d3bqca1          41 RKLGRGKYSEVFEAINITNNEKVVVKILKPVKKK---------------------------------------------K   75 (328)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSSCHH---------------------------------------------H
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEECHHHHH---------------------------------------------H
Confidence            6899999999999998  5999999998543211                                             1


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeec-cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          377 YTQEAANAELFASNFKDMDYV-KVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V-~vP~v~~e-~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      +.+|...+..+.    ++++| .+-.++.. .....++||||++|+.|.++..    .++...+...+.+  ..+..+|.
T Consensus        76 ~~~Ei~il~~l~----~hpnIv~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~----~l~e~~i~~i~~qil~aL~~LH~  147 (328)
T d3bqca1          76 IKREIKILENLR----GGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ----TLTDYDIRFYMYEILKALDYCHS  147 (328)
T ss_dssp             HHHHHHHHHHHT----TSTTBCCEEEEEECTTTCSEEEEEECCCSCBGGGTTT----SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc----CCCCCcEEEEEEEecCCCceeEEEeecCCCcHHHHhc----CCCHHHHHHHHHHHHHHHHHHhh
Confidence            234544444442    23332 22223322 2345799999999999877532    2444444433333  34788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCCHHHHHHH
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRT  531 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~-~~~~~D~~~l~~~  531 (766)
                      +|++|+|+||+|||++. .++.++++|||++..+.+....       ....++..+++++...... .+...|++++...
T Consensus       148 ~gIvHrDiKp~NILi~~-~~~~vkl~DFG~a~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~  219 (328)
T d3bqca1         148 MGIMHRDVKPHNVMIDH-EHRKLRLIDWGLAEFYHPGQEY-------NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM  219 (328)
T ss_dssp             TTEECCCCSGGGEEEET-TTTEEEECCGGGCEECCTTCCC-------CSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHH
T ss_pred             cccccccccccceEEcC-CCCeeeecccccceeccCCCcc-------cccccCccccCcccccCCCCCCcccchhhhhhh
Confidence            99999999999999985 3457999999999988654321       1223566677787765433 3556799998877


Q ss_pred             HHHHH
Q 004234          532 AQFFL  536 (766)
Q Consensus       532 i~~~l  536 (766)
                      +.+++
T Consensus       220 l~e~~  224 (328)
T d3bqca1         220 LASMI  224 (328)
T ss_dssp             HHHHH
T ss_pred             hHHhc
Confidence            65554

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.8e-16  Score=165.67  Aligned_cols=188  Identities=20%  Similarity=0.183  Sum_probs=126.1

Q ss_pred             ccccccceeEEEEEee--c-CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--K-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~-G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (766)
                      +.||+|+||.||+|+.  + |+.||||+.+......                       .   ..              .
T Consensus        13 ~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~-----------------------~---~~--------------~   52 (305)
T d1blxa_          13 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE-----------------------G---MP--------------L   52 (305)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT-----------------------S---CB--------------C
T ss_pred             EEEecccCeEEEEEEEECCCCEEEEEEEEehhhccc-----------------------h---HH--------------H
Confidence            5799999999999997  3 6789999985432211                       0   00              0


Q ss_pred             HHHHHHHHHHHHHHhcCCCCc-cccceeee----ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004234          376 DYTQEAANAELFASNFKDMDY-VKVPTIFW----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (766)
Q Consensus       376 Df~~EA~Nl~~f~~~f~~~~~-V~vP~v~~----e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~  448 (766)
                      .+.+|...+..+.. + ++++ +.+-.++.    +.....+++|||++|..+.........+.+...+...+.+  ..++
T Consensus        53 ~~~~E~~~l~~l~~-~-~HpnIv~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~  130 (305)
T d1blxa_          53 STIREVAVLRHLET-F-EHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLD  130 (305)
T ss_dssp             THHHHHHHHHHHHH-T-CCTTBCCEEEEEEEEECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh-c-CCCCcceeeeeecccccccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHH
Confidence            12233333333322 1 2232 22222221    1224569999999998776554444445555544433333  3478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004234          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (766)
Q Consensus       449 qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D~~~l  528 (766)
                      .+|.+|++|||+||.|||++.  ++.++++|||++........       .....+++.+++|++..-.-.++..|++++
T Consensus       131 yLH~~~ivHrDiKp~NILi~~--~~~~kl~dfg~~~~~~~~~~-------~~~~~gT~~Y~APE~~~~~~y~~~~DiwSl  201 (305)
T d1blxa_         131 FLHSHRVVHRDLKPQNILVTS--SGQIKLADFGLARIYSFQMA-------LTSVVVTLWYRAPEVLLQSSYATPVDLWSV  201 (305)
T ss_dssp             HHHHTTCCCCCCCGGGEEECT--TCCEEECSCCSCCCCCGGGG-------GCCCCCCCTTCCHHHHTTCCCCTHHHHHHH
T ss_pred             HHHhCCEEecCCCccEEEEcC--CCCeeecchhhhhhhccccc-------CCCcccChhhcCcchhcCCCCChhehhhch
Confidence            899999999999999999985  88999999999887765432       123457889999999877777888899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      .-.+.+++.
T Consensus       202 G~il~ell~  210 (305)
T d1blxa_         202 GCIFAEMFR  210 (305)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988777653

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.2e-16  Score=168.44  Aligned_cols=184  Identities=15%  Similarity=0.141  Sum_probs=123.5

Q ss_pred             ccccccceeEEEEEee--cCe--eEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGE--EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~--~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (766)
                      +.||+|+||.||+|++  +|.  .||||..+....+.                                         ..
T Consensus        16 ~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------~~   54 (309)
T d1fvra_          16 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD-----------------------------------------DH   54 (309)
T ss_dssp             EEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-----------------------------------------------
T ss_pred             EEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChH-----------------------------------------HH
Confidence            6899999999999999  455  46777653322111                                         01


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh---------------hcCCCHHHHH
Q 004234          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---------------ELGVDRKRLG  439 (766)
Q Consensus       375 lDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~---------------~~g~d~~~la  439 (766)
                      -+|.+|++.+.++.    ++++|.--.-+....+..++||||++|++|.++....               ...++...+.
T Consensus        55 ~~~~~E~~~l~~l~----~HpnIv~~~~~~~~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  130 (309)
T d1fvra_          55 RDFAGELEVLCKLG----HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL  130 (309)
T ss_dssp             CHHHHHHHHHTTCC----CCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHH
T ss_pred             HHHHHHHHHHHhcc----CCCCEeeEEEEEecCCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHH
Confidence            14566666665532    2343322222223456679999999999999975321               1234444444


Q ss_pred             HHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC
Q 004234          440 RYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG  517 (766)
Q Consensus       440 ~~lv~--~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG  517 (766)
                      ....+  ..+..+|..|++|+|+||.|||++.  ++.++|+|||++...........       ..+...+++++...-+
T Consensus       131 ~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~--~~~~kl~DfG~a~~~~~~~~~~~-------~~gt~~y~aPE~l~~~  201 (309)
T d1fvra_         131 HFAADVARGMDYLSQKQFIHRDLAARNILVGE--NYVAKIADFGLSRGQEVYVKKTM-------GRLPVRWMAIESLNYS  201 (309)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCSGGGEEECG--GGCEEECCTTCEESSCEECCC-----------CCTTTCCHHHHHHC
T ss_pred             HHHHHHHHHHHhhhcCCccccccccceEEEcC--CCceEEccccccccccccccccc-------eecCCcccchHHhccC
Confidence            33332  3477899999999999999999986  78999999999987765433211       2356677788888878


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q 004234          518 VLVPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       518 ~~~~~~D~~~l~~~i~~~l  536 (766)
                      ..++.+|+++|.-.+.+++
T Consensus       202 ~~~~~sDvwSfGvil~ell  220 (309)
T d1fvra_         202 VYTTNSDVWSYGVLLWEIV  220 (309)
T ss_dssp             EECHHHHHHHHHHHHHHHH
T ss_pred             CCCccceeehhHHHHHHHH
Confidence            8888889999998877665

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.5e-17  Score=170.71  Aligned_cols=190  Identities=12%  Similarity=0.083  Sum_probs=123.5

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||.||+|+.  +|+.||||+.+......                    .  ....+              ...
T Consensus        10 ~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~--------------------~--~~~~~--------------~~~   53 (273)
T d1xwsa_          10 PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISD--------------------W--GELPN--------------GTR   53 (273)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCC--------------------E--EECTT--------------CCE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccc--------------------h--hhhhH--------------HHH
Confidence            5799999999999998  69999999875432110                    0  00000              001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCC-ChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGI-KINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~-~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~  453 (766)
                      +.+|...+.++..   .+++|.--.-+.+.....++||||++|. .+.++.. ....++...+...+.+  ..+..+|..
T Consensus        54 ~~~E~~il~~l~~---~h~nIv~~~~~~~~~~~~~lv~e~~~~~~~l~~~~~-~~~~l~e~~~~~~~~qi~~al~~lH~~  129 (273)
T d1xwsa_          54 VPMEVVLLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFIT-ERGALQEELARSFFWQVLEAVRHCHNC  129 (273)
T ss_dssp             EEHHHHHHHHHCS---SSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHH-HHCSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcc---CCCCccEEEEEEeeCCeEEEEEEeccCcchHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            2345555555432   2333322222223456679999999874 5545432 2334555554444433  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHH
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTA  532 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~-~~~~D~~~l~~~i  532 (766)
                      |++|||+||+||+++. +++.++|+|||++.........        -..+++.+++|++..-+.. +...|++++...+
T Consensus       130 ~iiHrDiKp~NIll~~-~~~~vkl~DFG~a~~~~~~~~~--------~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvil  200 (273)
T d1xwsa_         130 GVLHRDIKDENILIDL-NRGELKLIDFGSGALLKDTVYT--------DFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILL  200 (273)
T ss_dssp             TEECSCCSGGGEEEET-TTTEEEECCCTTCEECCSSCBC--------CCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHH
T ss_pred             CCccccCcccceEEec-CCCeEEECccccceeccccccc--------ccccCCCcCCHHHHcCCCCCCcccccccceeee
Confidence            9999999999999984 3579999999999877654321        1347888999998875433 4457999999887


Q ss_pred             HHHHH
Q 004234          533 QFFLN  537 (766)
Q Consensus       533 ~~~l~  537 (766)
                      .+++.
T Consensus       201 yell~  205 (273)
T d1xwsa_         201 YDMVC  205 (273)
T ss_dssp             HHHHH
T ss_pred             hhHhh
Confidence            77653

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.2e-17  Score=175.20  Aligned_cols=187  Identities=12%  Similarity=0.087  Sum_probs=123.7

Q ss_pred             hhhccCc--ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004234          292 VFERFDV--EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (766)
Q Consensus       292 iF~~fd~--~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (766)
                      +.+.+..  +.||+|+||+||+|+.  +|+.||||+.+..  .                                     
T Consensus         9 i~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~--~-------------------------------------   49 (335)
T d2ozaa1           9 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--P-------------------------------------   49 (335)
T ss_dssp             GGGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS--H-------------------------------------
T ss_pred             cccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc--H-------------------------------------
Confidence            3444542  4799999999999998  6999999987321  0                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCc-cccceeeecc---CCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH
Q 004234          368 ASVLYQEIDYTQEAANAELFASNFKDMDY-VKVPTIFWEY---TTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA  442 (766)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~-V~vP~v~~e~---st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~la~~l  442 (766)
                              .+.+|...+.+..    ++++ |.+-.+|...   .+..+||||||+|++|.++..... ..++...+...+
T Consensus        50 --------~~~~E~~~~~~~~----~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~  117 (335)
T d2ozaa1          50 --------KARREVELHWRAS----QCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIM  117 (335)
T ss_dssp             --------HHHHHHHHHHHHT----TSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHH
T ss_pred             --------HHHHHHHHHHHhc----CCCCCCeEEEEEeecccCCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHH
Confidence                    1122333332221    2333 3333333221   234699999999999998754321 234444444443


Q ss_pred             HH--HHHHHHHhCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004234          443 VE--SYLEQILSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  519 (766)
Q Consensus       443 v~--~~l~qI~~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~  519 (766)
                      .+  ..+..+|..|++|||+||+||+++.. +++.++|+|||++..+......       ....+++.+++|++..-...
T Consensus       118 ~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~y  190 (335)
T d2ozaa1         118 KSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL-------TTPCYTPYYVAPEVLGPEKY  190 (335)
T ss_dssp             HHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCC-------CCCSCCCSSCCCCCCCGGGG
T ss_pred             HHHHHHHHHHHHcCCccccccccccccccccccccccccccceeeeccCCCcc-------ccccCCcccCCcHHHcCCCC
Confidence            33  34788999999999999999999752 2467999999999887654321       11346788888887765556


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 004234          520 VPTGDTTAVRRTAQFFL  536 (766)
Q Consensus       520 ~~~~D~~~l~~~i~~~l  536 (766)
                      ++..|++++...+++++
T Consensus       191 ~~~~DiwSlGvily~ll  207 (335)
T d2ozaa1         191 DKSCDMWSLGVIMYILL  207 (335)
T ss_dssp             SHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHhhchhHHHHh
Confidence            67789999998777665

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.61  E-value=2.7e-16  Score=163.14  Aligned_cols=184  Identities=15%  Similarity=0.082  Sum_probs=122.0

Q ss_pred             ccccccceeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (766)
                      +.||+|+||.||+|+. +|+.||||+.+......                           +.             +-.+
T Consensus         8 ~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~---------------------------~~-------------~~~~   47 (286)
T d1ob3a_           8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDE---------------------------GI-------------PSTT   47 (286)
T ss_dssp             EEEEEETTEEEEEEEETTSCEEEEEEECCSSGGG---------------------------CC-------------CHHH
T ss_pred             cEEecCCCcEEEEEEeCCCCEEEEEEEehhhcCh---------------------------HH-------------HHHH
Confidence            6899999999999999 79999999874332111                           00             1134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCc
Q 004234          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGF  455 (766)
Q Consensus       378 ~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv--~~~l~qI~~~Gf  455 (766)
                      .+|...+.++     ++++|.--.-+....+..+++|||+.|..+..+.. ....++...+...+.  -..++.+|..|+
T Consensus        48 ~~E~~il~~l-----~hpnIv~~~~~~~~~~~~~i~~e~~~~~~~~~~~~-~~~~l~~~~~~~i~~qi~~~L~~LH~~~I  121 (286)
T d1ob3a_          48 IREISILKEL-----KHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDV-CEGGLESVTAKSFLLQLLNGIAYCHDRRV  121 (286)
T ss_dssp             HHHHHGGGGC-----CCTTBCCEEEEEECSSCEEEEEECCSEEHHHHHHT-STTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhC-----CCCcEEeeeeecccCCceeEEEEeehhhhHHHHHh-hcCCcchhhhHHHHHHHHHHHHHhccCcE
Confidence            5566555544     23333322233345677899999999987766543 233455554444333  235888999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCCHHHHHHHHHH
Q 004234          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTAQF  534 (766)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~-lG~~~~~~D~~~l~~~i~~  534 (766)
                      +|+|+||.||+++.  ++.++++|||++..++.......      ...+.+.+++++... ....++..|++++...+.+
T Consensus       122 vHrDiKp~NIll~~--~~~~kl~DfG~a~~~~~~~~~~~------~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~e  193 (286)
T d1ob3a_         122 LHRDLKPQNLLINR--EGELKIADFGLARAFGIPVRKYT------HEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAE  193 (286)
T ss_dssp             CCSCCCGGGEEECT--TSCEEECCTTHHHHHCC---------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHH
T ss_pred             EecCCCCceeeEcC--CCCEEecccccceecccCccccc------eecccchhhhHHHHhCCCCCCcceeehhcCcHHHH
Confidence            99999999999985  89999999999988765432211      112455667777664 3445677899999988776


Q ss_pred             HH
Q 004234          535 FL  536 (766)
Q Consensus       535 ~l  536 (766)
                      ++
T Consensus       194 l~  195 (286)
T d1ob3a_         194 MV  195 (286)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.6e-16  Score=167.13  Aligned_cols=185  Identities=16%  Similarity=0.124  Sum_probs=115.3

Q ss_pred             ccccccceeEEEEEeecCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (766)
                      +.||+|+||+||+|+++|+.||||+.+..-.+                                       ....|    
T Consensus         9 ~~iG~G~fg~Vy~~~~~g~~vAvK~~~~~~~~---------------------------------------~~~~e----   45 (303)
T d1vjya_           9 ESIGKGRFGEVWRGKWRGEEVAVKIFSSREER---------------------------------------SWFRE----   45 (303)
T ss_dssp             EEEECCSSSEEEEEEETTEEEEEEEECGGGHH---------------------------------------HHHHH----
T ss_pred             EEEeeCCCeEEEEEEECCEEEEEEEECccchh---------------------------------------HHHHH----
Confidence            56999999999999999999999987321100                                       00011    


Q ss_pred             HHHHHHHHHHHhcCCCCccc-cceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004234          379 QEAANAELFASNFKDMDYVK-VPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (766)
Q Consensus       379 ~EA~Nl~~f~~~f~~~~~V~-vP~v~~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~  452 (766)
                      .|...+..    + ++++|. +-.+..+-.   ...+|||||+++++|.++..  ..+.+.........+  ..+..+|.
T Consensus        46 ~ei~~~~~----~-~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~--~~~l~~~~~~~~~~~ia~gl~~lH~  118 (303)
T d1vjya_          46 AEIYQTVM----L-RHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN--RYTVTVEGMIKLALSTASGLAHLHM  118 (303)
T ss_dssp             HHHHTSTT----C-CCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHH--HCCBCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhh----C-CCCcCcceEEEEEeCCCcceEEEEEEecccCCCHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            12221111    1 233322 111111111   24589999999999999764  334555444433333  33555664


Q ss_pred             --------CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC------
Q 004234          453 --------HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV------  518 (766)
Q Consensus       453 --------~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~------  518 (766)
                              .|++|+|+||+|||+++  ++.++|+|||++..+.......-  ....-..+++.+++|++..-..      
T Consensus       119 ~~~~~~~~~~IvHrDlKp~NILl~~--~~~~Kl~DFGl~~~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~  194 (303)
T d1vjya_         119 EIVGTQGKPAIAHRDLKSKNILVKK--NGTCCIADLGLAVRHDSATDTID--IAPNHRVGTKRYMAPEVLDDSINMKHFE  194 (303)
T ss_dssp             CBCSTTCBCEEECSCCCGGGEEECT--TSCEEECCCTTCEEEETTTTEEC--C----CCSCGGGCCHHHHTTCSCTTCHH
T ss_pred             hhhhhccCCCeeccccCccceEEcC--CCCeEEEecCccccccCCCccee--ccccceecccCcCChhhccccccccCCC
Confidence                    69999999999999985  89999999999987754321100  0011234688899999876432      


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 004234          519 LVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       519 ~~~~~D~~~l~~~i~~~l~  537 (766)
                      .+..+|+++|.-.+.+++.
T Consensus       195 ~~~k~Di~S~Gvvl~el~t  213 (303)
T d1vjya_         195 SFKRADIYAMGLVFWEIAR  213 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhhhhhHHHHHHHhh
Confidence            2335689999988777653

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.1e-15  Score=162.75  Aligned_cols=181  Identities=18%  Similarity=0.219  Sum_probs=116.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||+|+||.||+|+.  +|+.||||+.+......                                  ...+.      
T Consensus        24 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~----------------------------------~~~~~------   63 (346)
T d1cm8a_          24 QPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSE----------------------------------LFAKR------   63 (346)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEECSSTTSSH----------------------------------HHHHH------
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEchhhcCh----------------------------------HHHHH------
Confidence            5899999999999998  59999999985432111                                  11112      


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc-----CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY-----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQ  449 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~-----st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~q  449 (766)
                      +.+|.+.+..+    .+..-|.+-.++...     ....+|||||+ |..+.++..  ...++...+...+.+  ..+..
T Consensus        64 ~~~Ei~il~~l----~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~--~~~l~~~~~~~~~~qi~~aL~~  136 (346)
T d1cm8a_          64 AYRELRLLKHM----RHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMK--HEKLGEDRIQFLVYQMLKGLRY  136 (346)
T ss_dssp             HHHHHHHHHHC----CBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHH--HCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCeeEEEEEeccCccccccceEEEEEecc-cccHHHHHH--hccccHHHHHHHHHHHHHHHHH
Confidence            23444444443    232223333333221     12459999999 556666542  334665555444433  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHH
Q 004234          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAV  528 (766)
Q Consensus       450 I~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l  528 (766)
                      +|..|++|+|+||+|||++.  ++.++++|||++...+....         ...+++.+++++...- ...+...|++++
T Consensus       137 LH~~~IiHrDiKp~NIL~~~--~~~~kl~Dfg~a~~~~~~~~---------~~~~t~~y~aPE~~~~~~~~~~~~DiwSl  205 (346)
T d1cm8a_         137 IHAAGIIHRDLKPGNLAVNE--DCELKILDFGLARQADSEMT---------GYVVTRWYRAPEVILNWMRYTQTVDIWSV  205 (346)
T ss_dssp             HHHTTEECCCCCGGGEEECT--TCCEEECCCTTCEECCSSCC---------SSCSCGGGCCTHHHHTTTCCCTTHHHHHH
T ss_pred             HHhCCCcccccCcchhhccc--ccccccccccceeccCCccc---------cccccccccCHHHHcCCCCCCccchhhcc
Confidence            99999999999999999986  89999999999998876532         1346777888887653 445678899999


Q ss_pred             HHHHHHHHH
Q 004234          529 RRTAQFFLN  537 (766)
Q Consensus       529 ~~~i~~~l~  537 (766)
                      ...+.+++.
T Consensus       206 Gvil~ell~  214 (346)
T d1cm8a_         206 GCIMAEMIT  214 (346)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            988776653

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.3e-16  Score=163.77  Aligned_cols=187  Identities=16%  Similarity=0.137  Sum_probs=122.1

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||+||+|+.  +|+.||||+.++.-.+.                                   ..      -.
T Consensus        14 ~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~-----------------------------------~~------~~   52 (345)
T d1pmea_          14 SYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQT-----------------------------------YC------QR   52 (345)
T ss_dssp             EECC---CCCEEEEEETTTCSEEEEEEECCTTCHH-----------------------------------HH------HH
T ss_pred             EEEeeccCeEEEEEEECCCCcEEEEEEEehhcChH-----------------------------------HH------HH
Confidence            6899999999999998  69999999885421110                                   01      13


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQIL  451 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~~--~l~qI~  451 (766)
                      +.+|...+..+    .+..-+.+..++...+   ...+++|+|+.|++|.++..  ..+++...+...+.+.  .++.+|
T Consensus        53 ~~~Ei~il~~l----~hp~iv~~~~~~~~~~~~~~~~~~l~~~~~~g~L~~~l~--~~~l~~~~i~~i~~qil~al~yLH  126 (345)
T d1pmea_          53 TLREIKILLRF----RHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLK--TQHLSNDHICYFLYQILRGLKYIH  126 (345)
T ss_dssp             HHHHHHHHHHC----CCTTBCCCCEEECCSSTTTCCCEEEEEECCCEEHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc----CCCCCCcEEEEEeeccccccceEEEEEeecCCchhhhhh--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            44566655554    2333334444443221   23466677788999998753  3356666555544443  488899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHH
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRR  530 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~~~~D~~~l~~  530 (766)
                      ..|++|||+||+|||++.  ++.++|+|||++..+........   ......+.+.+++++++..+ ...+..|++++..
T Consensus       127 ~~~iiHRDIKp~NILl~~--~~~~kl~DfG~a~~~~~~~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~  201 (345)
T d1pmea_         127 SANVLHRDLKPSNLLLNT--TCDLKICDFGLARVADPDHDHTG---FLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC  201 (345)
T ss_dssp             HTTEECCCCCGGGEEECT--TCCEEECCCTTCEECCGGGCBCC---TTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHH
T ss_pred             HCCCcCCCCCcceEEECC--CCCEEEcccCceeeccCCCccce---eeccccccceechHHHhhcCCCCCchhhhhccCc
Confidence            999999999999999985  89999999999988766432210   01112356778888877544 3456679999998


Q ss_pred             HHHHHHH
Q 004234          531 TAQFFLN  537 (766)
Q Consensus       531 ~i~~~l~  537 (766)
                      .+.+++.
T Consensus       202 il~eml~  208 (345)
T d1pmea_         202 ILAEMLS  208 (345)
T ss_dssp             HHHHHHH
T ss_pred             eehHHhh
Confidence            8777653

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.9e-15  Score=156.13  Aligned_cols=184  Identities=15%  Similarity=0.074  Sum_probs=120.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||.||+|+.  +|+.||||+.+......                                  ...      -.
T Consensus         8 ~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~----------------------------------~~~------~~   47 (292)
T d1unla_           8 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDE----------------------------------GVP------SS   47 (292)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEESSCSST----------------------------------THH------HH
T ss_pred             eEEecCcCeEEEEEEECCCCcEEEEEEEehhhCCh----------------------------------HHH------HH
Confidence            5799999999999998  68999999985432111                                  001      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI~~~G  454 (766)
                      +.+|...+..+     .+++|.-..-+.......+++||++.|..+..+... ....+...+...+.+  ..++.+|..|
T Consensus        48 ~~~E~~il~~l-----~h~niv~~~~~~~~~~~~~iv~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~q~~~aL~~lH~~~  121 (292)
T d1unla_          48 ALREICLLKEL-----KHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSC-NGDLDPEIVKSFLFQLLKGLGFCHSRN  121 (292)
T ss_dssp             HHHHHHHHTTC-----CCTTBCCEEEEEECSSEEEEEEECCSEEHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhc-----CcCCEEeeccccccccceeEEeeecccccccccccc-ccccchhHHHHHHHHHHHHHHHhhcCC
Confidence            34444444333     233433333333445677999999999988876432 223444433333332  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004234          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (766)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~~~i~  533 (766)
                      ++|+|+||+||+++.  ++.++++|||.+..++.......      .......+..+++... ...++..|++++...+.
T Consensus       122 IvHrDiKP~NIli~~--~~~~kl~DFG~a~~~~~~~~~~~------~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~  193 (292)
T d1unla_         122 VLHRDLKPQNLLINR--NGELKLANFGLARAFGIPVRCYS------AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFA  193 (292)
T ss_dssp             EECCCCSGGGEEECT--TCCEEECCCTTCEECCSCCSCCC------SCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHH
T ss_pred             EeeecccCccccccc--CCceeeeecchhhcccCCCccce------eeccccchhhhhHhccCCCCCchhhccccchHHH
Confidence            999999999999985  78999999999998765432111      1123455566666544 34567789999998777


Q ss_pred             HHH
Q 004234          534 FFL  536 (766)
Q Consensus       534 ~~l  536 (766)
                      +++
T Consensus       194 ell  196 (292)
T d1unla_         194 ELA  196 (292)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            664

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.1e-15  Score=161.35  Aligned_cols=181  Identities=19%  Similarity=0.179  Sum_probs=115.7

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      +.||+|+||.||+|+.  +|+.||||+.+.+-..                                              
T Consensus        26 k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~----------------------------------------------   59 (350)
T d1q5ka_          26 KVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF----------------------------------------------   59 (350)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCSSS----------------------------------------------
T ss_pred             eEEeeCcCeEEEEEEECCCCCEEEEEEECccchH----------------------------------------------
Confidence            5799999999999999  5999999997432100                                              


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC-----CCeEEEEeecCCCChhhhhhh--hhcCCCHHHHHHHHHH--HHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT-----TPQILTMEYVPGIKINRIQSL--DELGVDRKRLGRYAVE--SYL  447 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~s-----t~~vLVMEyieG~~L~d~~~l--~~~g~d~~~la~~lv~--~~l  447 (766)
                      +.+|.+.+.++    .+..-+.+..++....     ...+|||||++|.....+...  ....++...+...+.+  ..+
T Consensus        60 ~~~Ei~il~~l----~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL  135 (350)
T d1q5ka_          60 KNRELQIMRKL----DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSL  135 (350)
T ss_dssp             CCHHHHHHHHC----CCTTBCCEEEEEEEC--CCSCCEEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCCCcEEEEEEecCccCCceEEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHH
Confidence            01233333333    2322233333332211     124899999998755554322  2223554444333322  447


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHH
Q 004234          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTT  526 (766)
Q Consensus       448 ~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~  526 (766)
                      +.+|.+|++|||+||+|||++. ++..++|+|||++..+.......       -..+...+++++.... ...+...|++
T Consensus       136 ~yLH~~~IiHrDiKp~NILl~~-~~~~~kl~DFG~a~~~~~~~~~~-------~~~gt~~y~aPE~~~~~~~~~~~~DIw  207 (350)
T d1q5ka_         136 AYIHSFGICHRDIKPQNLLLDP-DTAVLKLCDFGSAKQLVRGEPNV-------SYICSRYYRAPELIFGATDYTSSIDVW  207 (350)
T ss_dssp             HHHHTTTEECCCCCGGGEEECT-TTCCEEECCCTTCEECCTTSCCC-------SCCSCTTSCCHHHHTTCSSCCTHHHHH
T ss_pred             HHHHhcCCcccCCCcceEEEec-CCCceeEecccchhhccCCcccc-------cccccccccChHHhhcccCCCcceeec
Confidence            8899999999999999999985 23489999999998876543211       1235566677776543 3456778999


Q ss_pred             HHHHHHHHHHH
Q 004234          527 AVRRTAQFFLN  537 (766)
Q Consensus       527 ~l~~~i~~~l~  537 (766)
                      ++...+.+++.
T Consensus       208 SlG~il~el~~  218 (350)
T d1q5ka_         208 SAGCVLAELLL  218 (350)
T ss_dssp             HHHHHHHHHHH
T ss_pred             ccceEEEehhh
Confidence            99987766653

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6e-15  Score=156.73  Aligned_cols=182  Identities=18%  Similarity=0.179  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004234          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (766)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (766)
                      ++||+|+||.||+|+.  +|+.||||+.+......                             .           ..-.
T Consensus        24 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~-----------------------------~-----------~~~~   63 (348)
T d2gfsa1          24 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSI-----------------------------I-----------HAKR   63 (348)
T ss_dssp             EECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSH-----------------------------H-----------HHHH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEECchhcCh-----------------------------H-----------HHHH
Confidence            6899999999999997  69999999875332111                             0           0112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc----CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004234          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (766)
Q Consensus       377 f~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~----st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--~~l~qI  450 (766)
                      +.+|++.+..+    .+...|.+..++...    ....+++|+|+.|++|.++..  ...++...+...+.+  ..+..+
T Consensus        64 ~~~Ei~il~~l----~h~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~--~~~l~e~~~~~i~~qil~aL~~L  137 (348)
T d2gfsa1          64 TYRELRLLKHM----KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVK--CQKLTDDHVQFLIYQILRGLKYI  137 (348)
T ss_dssp             HHHHHHHHHHC----CCTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHT--TCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCeeeEEEEEeeccccccCceEEEEEeecCCchhhhcc--cccccHHHHHHHHHHHHHHHHHH
Confidence            34555555554    233334444444321    233477788889999998753  334565555444433  347889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHH
Q 004234          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVR  529 (766)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~l-G~~~~~~D~~~l~  529 (766)
                      |..|++|||+||+||+++.  +|.++++|||++.........         ..+.+.+++++.... ...+...|++++.
T Consensus       138 H~~giiHrDiKp~NILi~~--~~~~kl~dfg~a~~~~~~~~~---------~~g~~~y~apE~~~~~~~~~~~~DiwSlG  206 (348)
T d2gfsa1         138 HSADIIHRDLKPSNLAVNE--DCELKILDFGLARHTDDEMTG---------YVATRWYRAPEIMLNWMHYNQTVDIWSVG  206 (348)
T ss_dssp             HHTTCCCCCCCGGGEEECT--TCCEEECCC----CCTGGGSS---------SCHHHHTSCHHHHTTCSCCCTTHHHHHHH
T ss_pred             HhCCCcccccCCccccccc--cccccccccchhcccCccccc---------ccccccccCchhhcCCccCCcccchhhhh
Confidence            9999999999999999986  899999999999887654332         123455566665443 3456778999999


Q ss_pred             HHHHHHHH
Q 004234          530 RTAQFFLN  537 (766)
Q Consensus       530 ~~i~~~l~  537 (766)
                      ..+.+++.
T Consensus       207 v~l~~ll~  214 (348)
T d2gfsa1         207 CIMAELLT  214 (348)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88776653

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.4e-14  Score=155.15  Aligned_cols=186  Identities=18%  Similarity=0.181  Sum_probs=114.8

Q ss_pred             ccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004234          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (766)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (766)
                      .|+. +.||+|+||.||+|+.  +|+.||||+.+......                                  +.    
T Consensus        18 ~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~----------------------------------~~----   59 (355)
T d2b1pa1          18 RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQ----------------------------------TH----   59 (355)
T ss_dssp             TEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSH----------------------------------HH----
T ss_pred             CeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCH----------------------------------HH----
Confidence            4443 7899999999999998  59999999985432211                                  00    


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeee-----ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--
Q 004234          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--  444 (766)
Q Consensus       372 ~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~-----e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~lv~--  444 (766)
                        ...+.+|...+.++    .+..-|..-.++.     +..+..++||||+.|..+..+.    ..++...+...+.+  
T Consensus        60 --~~~~~~Ei~il~~l----~hpnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~~~~~----~~~~~~~i~~~~~qil  129 (355)
T d2b1pa1          60 --AKRAYRELVLMKCV----NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYLLYQML  129 (355)
T ss_dssp             --HHHHHHHHHHHHHC----CCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHHT----SCCCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHhc----CCCCeeEEEEEEecccccccCceeEEEEeccchHHHHhhh----cCCCHHHHHHHHHHHH
Confidence              01234455544443    2222223333332     2235669999999987666542    23454444444333  


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004234          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (766)
Q Consensus       445 ~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG~~~~~~D  524 (766)
                      ..+..+|..|++|+|+||.||+++.  ++.++++|||+....+......       ...++..+++++.+.-....+..|
T Consensus       130 ~gl~~LH~~giiHrDlKP~Nil~~~--~~~~kl~df~~~~~~~~~~~~~-------~~~~t~~y~aPE~l~~~~~~~~~D  200 (355)
T d2b1pa1         130 CGIKHLHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMMT-------PYVVTRYYRAPEVILGMGYKENVD  200 (355)
T ss_dssp             HHHHHHHHTTCCCSCCCGGGEEECT--TCCEEECCCCC----------------------CCTTCCHHHHTTCCCCTTHH
T ss_pred             HHHHHhhhcccccccCCcccccccc--ccceeeechhhhhccccccccc-------cccccccccChhhhcCCCCCCCcc
Confidence            3478899999999999999999985  8899999999988776644322       123456677788776556677889


Q ss_pred             HHHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFLN  537 (766)
Q Consensus       525 ~~~l~~~i~~~l~  537 (766)
                      ++++...+.+++.
T Consensus       201 iwSlG~~l~ell~  213 (355)
T d2b1pa1         201 IWSVGCIMGEMVR  213 (355)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cccccchHHHHhh
Confidence            9999987766653

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.2e-15  Score=157.69  Aligned_cols=193  Identities=17%  Similarity=0.184  Sum_probs=126.2

Q ss_pred             ccCc-ccccccceeEEEEEee-----cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004234          295 RFDV-EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (766)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (766)
                      .|+. +.||+|+||.||+|+.     +|+.||||+.++.....                .        ....        
T Consensus        25 ~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~----------------~--------~~~~--------   72 (322)
T d1vzoa_          25 NFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQ----------------K--------AKTT--------   72 (322)
T ss_dssp             GEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEE----------------E--------ESSG--------
T ss_pred             ceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhcc----------------c--------hHHH--------
Confidence            3444 7899999999999986     38999999875432100                0        0000        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHH
Q 004234          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESY  446 (766)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l--v~~~  446 (766)
                            -.+.+|++.+.++.+    .++|.--.-+.+.....+++|||++|++|.+...... ......+...+  +-..
T Consensus        73 ------~~~~~E~~il~~l~h----~pnIv~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~~-~~~e~~~~~~~~Qi~~a  141 (322)
T d1vzoa_          73 ------EHTRTERQVLEHIRQ----SPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLA  141 (322)
T ss_dssp             ------GGCCCHHHHHHHHHT----CTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHhccC----CCeEEEeeeeeccCCceeeeeecccccHHHHHHHhcc-cccHHHHHHHHHHHHHH
Confidence                  023456666666653    3333222233344567799999999999988653222 22333332222  3345


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCC
Q 004234          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGD  524 (766)
Q Consensus       447 l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG--~~~~~~D  524 (766)
                      ++.+|..|++|+|+||.||+++.  +|.++|+|||++..+........     ....+.+.+++++....+  ..++..|
T Consensus       142 l~~lH~~~ivHrDiKp~Nill~~--~~~vkL~DFG~a~~~~~~~~~~~-----~~~~g~~~~~~pe~~~~~~~~~~~ksD  214 (322)
T d1vzoa_         142 LEHLHKLGIIYRDIKLENILLDS--NGHVVLTDFGLSKEFVADETERA-----YDFCGTIEYMAPDIVRGGDSGHDKAVD  214 (322)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECT--TSCEEESCSSEEEECCGGGGGGG-----CGGGSCCTTCCHHHHTTCC---CTHHH
T ss_pred             HHHhhcCCEEeccCCccceeecC--CCCEEEeeccchhhhcccccccc-----cccccccccchhHHhhcCCcCCCchhh
Confidence            78899999999999999999986  89999999999998865433221     123456677777777543  2345679


Q ss_pred             HHHHHHHHHHHHH
Q 004234          525 TTAVRRTAQFFLN  537 (766)
Q Consensus       525 ~~~l~~~i~~~l~  537 (766)
                      ++++.-.+.+++.
T Consensus       215 IWSlG~iLyellt  227 (322)
T d1vzoa_         215 WWSLGVLMYELLT  227 (322)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh
Confidence            9999988877764

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.2e-14  Score=152.65  Aligned_cols=195  Identities=15%  Similarity=0.107  Sum_probs=120.6

Q ss_pred             hccCc-ccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004234          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (766)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (766)
                      ..|+. +.||+|+||+||+|+.  +|+.||||+.+..-...                    .      .           
T Consensus        10 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~--------------------~------~-----------   52 (318)
T d3blha1          10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE--------------------G------F-----------   52 (318)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTT--------------------S------S-----------
T ss_pred             CCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcch--------------------H------H-----------
Confidence            34443 6899999999999998  69999999863211000                    0      0           


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeec-------cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH-
Q 004234          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWE-------YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA-  442 (766)
Q Consensus       371 l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e-------~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~la~~l-  442 (766)
                         ..++.+|...+.++    .+...+.+..++..       .....+++|||+++..+..... .........+...+ 
T Consensus        53 ---~~~~~~E~~il~~l----~h~nii~~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~  124 (318)
T d3blha1          53 ---PITALREIKILQLL----KHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSN-VLVKFTLSEIKRVMQ  124 (318)
T ss_dssp             ---CHHHHHHHHHHHHC----CCTTBCCEEEEEEC----------CEEEEEECCCEEHHHHHTC-TTCCCCHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHh----cCCCccceEeeeecccccccccCceEEEEEeccCCCccchhhh-cccccccHHHHHHHH
Confidence               01234555555544    33333344444322       1234689999999877654432 22233333333222 


Q ss_pred             -HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCC
Q 004234          443 -VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLV  520 (766)
Q Consensus       443 -v~~~l~qI~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~~~l~~lG-~~~  520 (766)
                       +-..++.+|..|++|+|+||.||+++.  ++.+++.|||++..++........  ......+++.+++++..... ..+
T Consensus       125 qil~~l~~lH~~~ivHrDlKp~NILl~~--~~~~kl~dfg~~~~~~~~~~~~~~--~~~~~~gT~~Y~aPE~~~~~~~~~  200 (318)
T d3blha1         125 MLLNGLYYIHRNKILHRDMKAANVLITR--DGVLKLADFGLARAFSLAKNSQPN--RYTNRVVTLWYRPPELLLGERDYG  200 (318)
T ss_dssp             HHHHHHHHHHHTTEECCCCCGGGEEECT--TSCEEECCCTTCEECCC-----CC--CCCSCCSCGGGCCHHHHTTCSSCC
T ss_pred             HHHHHHHHhccCCEEecCcCchheeecC--CCcEEeeecceeeecccccccccc--cccceecCHHHhhHHHHcCCCCCC
Confidence             233478899999999999999999985  899999999999887754322110  00112356788888887533 346


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 004234          521 PTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       521 ~~~D~~~l~~~i~~~l~  537 (766)
                      +..|++++.-.+.+++.
T Consensus       201 ~k~DiwSlGvil~el~~  217 (318)
T d3blha1         201 PPIDLWGAGCIMAEMWT  217 (318)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             cHHHcccCCceeeeHhh
Confidence            67899999988777653

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=1.4e-13  Score=146.18  Aligned_cols=201  Identities=11%  Similarity=0.066  Sum_probs=118.6

Q ss_pred             hhhhhh--ccC-cccccccceeEEEEEee--cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHH
Q 004234          289 LDDVFE--RFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAI  363 (766)
Q Consensus       289 ~eeiF~--~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i  363 (766)
                      ++++|.  .+. .+.||.|+||+||+|+.  +|+.||||+.+..-.                                  
T Consensus         6 ~g~~~~~~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~----------------------------------   51 (362)
T d1q8ya_           6 KGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKV----------------------------------   51 (362)
T ss_dssp             TTCEETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHH----------------------------------
T ss_pred             CCCCccCCcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecccc----------------------------------
Confidence            345554  243 37899999999999998  699999999854310                                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeec----cCCCeEEEEeecCCCChhhh--hhhhhcCCCHHH
Q 004234          364 YDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWE----YTTPQILTMEYVPGIKINRI--QSLDELGVDRKR  437 (766)
Q Consensus       364 ~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e----~st~~vLVMEyieG~~L~d~--~~l~~~g~d~~~  437 (766)
                         ..+...+|++...+..+...........+  .+++++..    -....+++|+++.+......  ............
T Consensus        52 ---~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~--~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (362)
T d1q8ya_          52 ---YTEAAEDEIKLLQRVNDADNTKEDSMGAN--HILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIY  126 (362)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTCCSHHHHHHHT--TBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHH
T ss_pred             ---chHHHHHHHHHHHHhcchhhhhhhhcCcC--ceEEEEEEeeeccccceeeeeeecccccccccccccccccCCcHHH
Confidence               01122344444444432111110000111  12223221    12345677777665543322  111222333333


Q ss_pred             HHHHHHH--HHHHHHHh-CCccccCCCCCcEEEeecCC----CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHH
Q 004234          438 LGRYAVE--SYLEQILS-HGFFHADPHPGNIAVDDVNG----GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVL  510 (766)
Q Consensus       438 la~~lv~--~~l~qI~~-~GffHaDpHPGNILV~~~~~----g~l~LiDFGlv~~L~~~~r~~l~~l~~a~~~~D~~~v~  510 (766)
                      +...+.+  ..+..+|. .|++|+|+||+|||++....    ..++++|||.+........         ...+++.+++
T Consensus       127 i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~~~---------~~~gt~~y~a  197 (362)
T d1q8ya_         127 VKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYT---------NSIQTREYRS  197 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCC---------SCCSCGGGCC
T ss_pred             HHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCcccccceeeEeecccccccccccc---------cccccccccC
Confidence            3332222  33667776 99999999999999985211    2599999999987765432         1246778888


Q ss_pred             HHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004234          511 QAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (766)
Q Consensus       511 ~~l~~lG~~~~~~D~~~l~~~i~~~l~  537 (766)
                      +++...+-.++..|++++...+..++.
T Consensus       198 PE~~~~~~~~~~~DiwSlG~il~el~~  224 (362)
T d1q8ya_         198 PEVLLGAPWGCGADIWSTACLIFELIT  224 (362)
T ss_dssp             HHHHHTCCCCTHHHHHHHHHHHHHHHH
T ss_pred             hhhccccCCCccccccchHHHHHHHHH
Confidence            998887777788899999887766553

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=98.72  E-value=6.1e-08  Score=96.41  Aligned_cols=82  Identities=18%  Similarity=0.149  Sum_probs=54.9

Q ss_pred             hhccCcccccccc-eeEEEEEee-cCeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004234          293 FERFDVEPIAAAS-LGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (766)
Q Consensus       293 F~~fd~~PIgsaS-iGQVhrA~l-~G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (766)
                      ....+-+|++.|. -++||+... .|..+++|+.+|+-...                                       
T Consensus        10 l~g~~~~~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~~~---------------------------------------   50 (255)
T d1nd4a_          10 LFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNE---------------------------------------   50 (255)
T ss_dssp             TTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCTTSC---------------------------------------
T ss_pred             ccCCceEEcCCcccCCeEEEEEeCCCCEEEEEeCCccCHhH---------------------------------------
Confidence            3344556777765 589999999 57779999987764332                                       


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhh
Q 004234          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINR  424 (766)
Q Consensus       371 l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~--e~st~~vLVMEyieG~~L~d  424 (766)
                            +..|++.++.+..     ..+.+|+++.  .-.+..+++|||++|.++.+
T Consensus        51 ------l~~E~~~l~~L~~-----~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~~~   95 (255)
T d1nd4a_          51 ------LQDEAARLSWLAT-----TGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS   95 (255)
T ss_dssp             ------HHHHHHHHHHHHT-----TTCCBCCEEEEEECSSCEEEEEECCSSEETTT
T ss_pred             ------HHHHHHHHHHHHh-----cCCCCCceeeecccccceEEEEEeeecccccc
Confidence                  2334444444432     2467898885  33456799999999988754

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.34  E-value=2e-06  Score=85.51  Aligned_cols=34  Identities=35%  Similarity=0.369  Sum_probs=27.3

Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004234          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (766)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (766)
                      .++|+|+||+||++++  ++.+.++||+.++.=++.
T Consensus       184 ~l~HgD~~~~Nil~~~--~~~~~lIDwe~a~~g~~~  217 (263)
T d1j7la_         184 VFSHGDLGDSNIFVKD--GKVSGFIDLGRSGRADKW  217 (263)
T ss_dssp             EEECSCCCTTSEEEET--TEEEEECCCTTCEEEEHH
T ss_pred             EEEEeeccCcceeecC--CceEEEeechhcccCCHH
Confidence            4899999999999973  444569999999975543

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=98.30  E-value=2.7e-06  Score=91.20  Aligned_cols=90  Identities=18%  Similarity=0.127  Sum_probs=56.8

Q ss_pred             ccCcccccccceeEEEEEee-c-CeeEEEEEecCCccchHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004234          295 RFDVEPIAAASLGQVHRARL-K-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (766)
Q Consensus       295 ~fd~~PIgsaSiGQVhrA~l-~-G~~VAVKVqrP~i~~~i~~Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (766)
                      .++.++||.|.+..||+.+. + |+.|+||...|.++..                   +..  ...+...          
T Consensus        28 ~l~~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~-------------------g~~--~~~~~~R----------   76 (392)
T d2pula1          28 TLTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVV-------------------GES--WPLTIDR----------   76 (392)
T ss_dssp             CCEEEECCSSSSEEEEEEEC----CEEEEEEECCGGGC---------------------CC--CCCCTTH----------
T ss_pred             CeeEEEeCCCceEeEEEEEeCCCCeEEEEecCCchhccc-------------------CCC--CCCCHHH----------
Confidence            34557899999999999998 3 7899999877765322                   100  0011111          


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChh
Q 004234          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKIN  423 (766)
Q Consensus       373 ~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVMEyieG~~L~  423 (766)
                          ...|++.+..+..    .....+|++|..-....+++|||++|.++.
T Consensus        77 ----~~~E~~~L~~~~~----~~p~~vP~v~~~d~~~~~lvmE~L~~~~~~  119 (392)
T d2pula1          77 ----ARIESSALIRQGE----HVPHLVPRVFYSDTEMAVTVMEDLSHLKIA  119 (392)
T ss_dssp             ----HHHHHHHHHHHHT----TCGGGSCCEEEEETTTTEEEECCCTTSEEH
T ss_pred             ----HHHHHHHHHHhhh----hCCCCcceEEEEcCCCCEEEEeccCCcccc
Confidence                1234444444432    234678999986667789999999987653

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=9.6e-07  Score=92.10  Aligned_cols=30  Identities=30%  Similarity=0.317  Sum_probs=24.7

Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceecc
Q 004234          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  486 (766)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L  486 (766)
                      .|++|+|+||+||+++   ++ ..++||+-++.=
T Consensus       192 ~~liHgDlh~~NvL~~---~~-~~~IDFdd~~~g  221 (325)
T d1zyla1         192 VLRLHGDCHAGNILWR---DG-PMFVDLDDARNG  221 (325)
T ss_dssp             CEECCSSCSGGGEEES---SS-EEECCCTTCCEE
T ss_pred             ceeecCCCCcccEEEe---CC-ceEEechhcccC
Confidence            5789999999999996   34 458999988853

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.44  E-value=0.00026  Score=72.14  Aligned_cols=32  Identities=22%  Similarity=0.189  Sum_probs=27.5

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceec
Q 004234          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  485 (766)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~  485 (766)
                      ..|++|+|+||+|++++.  ++...++||+.++.
T Consensus       182 ~~giIHgDl~~dNvl~~~--~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         182 PAGVIHADLFQDNVFFLG--DELSGLIDFYFACN  213 (316)
T ss_dssp             CEEEECSCCCGGGEEEET--TEEEEECCCTTCEE
T ss_pred             ccccccCCcchhhhhccc--ccceeEeccccccc
Confidence            478999999999999984  55568999999875

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.66  E-value=0.0036  Score=65.93  Aligned_cols=106  Identities=18%  Similarity=0.265  Sum_probs=68.5

Q ss_pred             hCCCCCC--hHHHHHHHHHHhCCChhhh-hhccCcccccccceeEEEEEee-c--------CeeEEEEEecCCccchHHH
Q 004234          267 DQVPPFP--SETAVSIVEEELGAPLDDV-FERFDVEPIAAASLGQVHRARL-K--------GEEVVVKVQRPGLKDLFDI  334 (766)
Q Consensus       267 d~vpp~p--~~~v~~iie~elG~~~eei-F~~fd~~PIgsaSiGQVhrA~l-~--------G~~VAVKVqrP~i~~~i~~  334 (766)
                      .++...|  -+.++.++.+.++..|..+ .+++..++++.|-.-++|+... +        ++.|++++-- +...    
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~l~~~W~~~~~~~l~v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~~~~----   87 (395)
T d1nw1a_          13 TDANTIPELKERAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-NPET----   87 (395)
T ss_dssp             CCGGGCHHHHHHHHHHHHHHHCTHHHHCCGGGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-SCCC----
T ss_pred             ccccccchHHHHHHHHHHHhCcccccCCCccceEEEEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-Ccch----
Confidence            3444454  2345667777788777664 2456778999999999999987 2        2467777641 1110    


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEE
Q 004234          335 DLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTM  414 (766)
Q Consensus       335 Dl~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~~f~~~f~~~~~V~vP~v~~e~st~~vLVM  414 (766)
                                                             .+|-.+|.+++..+.+.     ++ .|++|.-.  ...++|
T Consensus        88 ---------------------------------------~idr~~E~~i~~~ls~~-----gl-~Pkll~~~--~~g~I~  120 (395)
T d1nw1a_          88 ---------------------------------------ESHLVAESVIFTLLSER-----HL-GPKLYGIF--SGGRLE  120 (395)
T ss_dssp             ---------------------------------------HHHHHHHHHHHHHHHHT-----TS-SSCEEEEE--TTEEEE
T ss_pred             ---------------------------------------hhHHHHHHHHHHHHHhC-----CC-CCeEEEEc--CCceEE
Confidence                                                   12334566666666542     23 68888643  458999


Q ss_pred             eecCCCChhh
Q 004234          415 EYVPGIKINR  424 (766)
Q Consensus       415 EyieG~~L~d  424 (766)
                      ||++|.++..
T Consensus       121 efi~g~~l~~  130 (395)
T d1nw1a_         121 EYIPSRPLSC  130 (395)
T ss_dssp             CCCCEEECCT
T ss_pred             EEeccccCCh
Confidence            9999977653