Citrus Sinensis ID: 004246

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760------
METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFFPLAVGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKLGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSSDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAV
ccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccHHHcccHHHHHccccccccccccEEEEccEEEEEccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHcccccccccccccccHHHHHccccccccccccccccccccHHHHHHccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccEEEEEEccccHHHHHHHHccHHHHHHHHHcccccccccccEEEEEEccEEEEEEccEEEEEEccccccccccEEEEEccEEEEccccEEEEEEEEcccccccEEEEEEcccccEEEccccccccccccccccccEEEEccccccccccccEEEEEccccccccEEEEEccHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccc
cccEEccccccccccccHHccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHccHHHHHccccEEEEcccHHHHHHHccccccHHHHccccHHHHHHHHcHHHHcccccccccccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccHHHHcccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHcccccHHcccccccEEEEEEEcccHHHHHHHHHcHHHHHHHHHHccccccccccEEEEEEccEEEEEEccEEEEEcccccccccccEEEEEEEEEEEccccEEEEEEEEcccccccEEEEEEcccEEEEEcccccccccccccccccEEEEEEEcccccccccEEEEEEcccccccccEEEEEcHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcc
metrfrgeahhfygmnsMDLRAVGKKTlewdlndwkwdgdlfiasklnpapnenigrqffplavgnssnsssscsdevnlgiengkrEVEKKRRAVVVedhnsyevaagglslklggnghplseremgnwagssgkktkfgggsssraVCQVedcgadlsnakdyhrrhkvCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLaghnkrrrktnpdavangsspnndqtsGYLLISLLRILSnmhssrsdqrtDQDLLSHLLRglaspagenggrgISGLLQEHQDMLNERTSAGNSEVVQAFLangqgcptpfrQQLNATvsempqqvslphdargaedqdgnvaqikmnnfdlndvyidsddgtedverspvpanlgtssidcpswvrqdsqqssppqtsgnsdsasaqspssssdaqsrTDRIVFKLfgkepndfplVLRAQILDWlshspsdmesyirpgCVILTIYLRQAEAAWEELCCDLTFSLSRlldlsndsfwtSGWVYARVQHQIAFIYNgqvvldtslpprsnnyskilsvkpiavpaseRAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLddvdgfkeldelqcvnfscsipavtgrgfieiedhgfsstffpfivAEEDVCSEIRMLESALEfnrtdadverfgkidtknQAMDFIHEIGWLFhrsqsksrlghldpntdlfplrRFKWLIEFSMDHEWCAVVKKLLHILLDGtvslgehpsldlALTELGLLHRAV
metrfrgeahhfygmnsmdlrAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFFPLAVGNSSNSSSSCSDEvnlgiengkrevekkrravvvedhnsyevaagglslklgGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVlqefdegkrscrrrlaghnkrrrktnpdavangsspnndqTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTsgnsdsasaqspssssdaqsrTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESalefnrtdadvERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVslgehpsldlaltelgllhrav
METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFFPLAVGnssnsssscsDEVNLGIENGkrevekkrravvveDHNSYEVAAGGLSLKLGGNGHPLSEREMGNWAgssgkktkfgggsssRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRqdsqqssppqtsGNsdsasaqspssssdaqsRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFslsrlldlsndsFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAV
*********HHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPA***NIGRQFFPL*****************************************YEVAAG***************************************VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD*************************************GYLLISLLRIL************************************************************AFLA*******************************************KMNNFDLNDVYI****************************************************************RIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLL****
*******************************LNDWKWDGDLF************************************************************************************************************QVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRS*************************************************************************************************************************************************************************************************************************************FKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLD*****KELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFH****************LFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAV
********AHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFFPLAVG************VNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKLGGNGHPLSEREMGN******************AVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLA********************NNDQTSGYLLISLLRILSNM*********DQDLLSHLLRGLASPAGENGGRGISGLLQEHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSW*********************************RTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAV
**************MNSM*L******TLEWDLNDWKWDGDLFIASKLNPAP*****************************************R****************************************************SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAG**************************YLLISLLRILS************QDLLSHLLRGLASP*********************************************************************************MNNFDLNDVYIDS**********************CP***********************************RTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRT*****RFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRA*
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METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFFPLAVGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKLGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSSDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query766 2.2.26 [Sep-21-2011]
Q9S7P5 927 Squamosa promoter-binding yes no 0.924 0.763 0.575 0.0
Q9SMX9 881 Squamosa promoter-binding no no 0.879 0.765 0.578 0.0
Q75LH6 969 Squamosa promoter-binding yes no 0.966 0.763 0.434 1e-164
Q9LGU7 862 Squamosa promoter-binding no no 0.812 0.721 0.344 1e-103
Q6Z8M8 1140 Squamosa promoter-binding no no 0.454 0.305 0.350 2e-52
A2YX04 1140 Squamosa promoter-binding N/A no 0.454 0.305 0.350 2e-52
Q8RY95 1035 Squamosa promoter-binding no no 0.447 0.331 0.358 3e-51
Q700C2 988 Squamosa promoter-binding no no 0.434 0.337 0.365 4e-50
P93015131 Squamosa promoter-binding no no 0.118 0.694 0.637 8e-29
Q38740171 Squamosa promoter-binding N/A no 0.127 0.573 0.602 4e-28
>sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1 Back     alignment and function desciption
 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/780 (57%), Positives = 550/780 (70%), Gaps = 72/780 (9%)

Query: 1   METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFF 60
           ME R  GE       +S++    GK+++EWDLNDWKW+GDLF+A++LN            
Sbjct: 1   MEARIEGEVEG----HSLEYGFSGKRSVEWDLNDWKWNGDLFVATQLNHG---------- 46

Query: 61  PLAVGNSSNSSSSCSDEVNLGIENGKR---EVEKKRRAVVV---EDHNSYEVAAGGLSLK 114
                 SSNSSS+CSDE N+ I   +R   E +KKRRAV V   E+ N  +  A  L+L 
Sbjct: 47  ------SSNSSSTCSDEGNVEIMERRRIEMEKKKKRRAVTVVAMEEDNLKDDDAHRLTLN 100

Query: 115 LGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVC-QVEDCGADLSNAKDYHRRHKVCE 173
           LGGN          N  G+  KKTK GGG  SRA+C QV++CGADLS  KDYHRRHKVCE
Sbjct: 101 LGGN----------NIEGNGVKKTKLGGGIPSRAICCQVDNCGADLSKVKDYHRRHKVCE 150

Query: 174 MHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGS 233
           +HSKA+ ALVG +MQRFCQQCSRFHVL+EFDEGKRSCRRRLAGHNKRRRK NPD + NG+
Sbjct: 151 IHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKANPDTIGNGT 210

Query: 234 SPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQ 293
           S ++DQTS Y+LI+LL+ILSN+HS++SDQ  DQDLLSHLL+ L S AGE+ GR     L 
Sbjct: 211 SMSDDQTSNYMLITLLKILSNIHSNQSDQTGDQDLLSHLLKSLVSQAGEHIGRN----LV 266

Query: 294 EHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQD 353
                     ++ N   + A L+  Q    P     + +VSE P Q    + A+     D
Sbjct: 267 GLLQGGGGLQASQNIGNLSALLSLEQA---PREDIKHHSVSETPWQEVYANSAQERVAPD 323

Query: 354 GNVAQIKMNNFDLNDVYIDSDDGTEDVER-SPVPANLGTSSIDCPSWVRQDSQQSSPPQT 412
            +  Q+K+N+FDLND+YIDSDD T D+ER SP P N  TSS+D      QDS+QSSPPQT
Sbjct: 324 RSEKQVKVNDFDLNDIYIDSDD-TTDIERSSPPPTNPATSSLD----YHQDSRQSSPPQT 378

Query: 413 S--GNSDSASAQSPSSSSDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMES 470
           S   +  ++     SSS DAQSRTDRIVFKLFGKEPNDFP+ LR QIL+WL+H+P+DMES
Sbjct: 379 SRRNSDSASDQSPSSSSGDAQSRTDRIVFKLFGKEPNDFPVALRGQILNWLAHTPTDMES 438

Query: 471 YIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIY 530
           YIRPGC++LTIYLRQ EA+WEELCCDL+FSL RLLDLS+D  WT GW+Y RVQ+Q+AF +
Sbjct: 439 YIRPGCIVLTIYLRQDEASWEELCCDLSFSLRRLLDLSDDPLWTDGWLYLRVQNQLAFAF 498

Query: 531 NGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMV 590
           NGQVVLDTSLP RS++YS+I++V+P+AV  +++AQF VKGINL R  TRLLC VEG ++V
Sbjct: 499 NGQVVLDTSLPLRSHDYSQIITVRPLAV--TKKAQFTVKGINLRRPGTRLLCTVEGTHLV 556

Query: 591 QEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDH-GFSSTFFPFIVAE-ED 648
           QEAT   +++ D  KE +E+  VNFSC +P  +GRGF+EIED  G SS+FFPFIV+E ED
Sbjct: 557 QEATQGGMEERDDLKENNEIDFVNFSCEMPIASGRGFMEIEDQGGLSSSFFPFIVSEDED 616

Query: 649 VCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPN- 707
           +CSEIR LES LEF  TD+ +          QAMDFIHEIGWL HRS+ KSRL   D N 
Sbjct: 617 ICSEIRRLESTLEFTGTDSAM----------QAMDFIHEIGWLLHRSELKSRLAASDHNP 666

Query: 708 TDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILL-DGTVSLGEHPSLDLALTELGLLHRAV 766
            DLF L RFK+LIEFSMD EWC V+KKLL+IL  +GTV     PS D AL+EL LLHRAV
Sbjct: 667 EDLFSLIRFKFLIEFSMDREWCCVMKKLLNILFEEGTVD----PSPDAALSELCLLHRAV 722
Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2 Back     alignment and function description
>sp|Q75LH6|SPL6_ORYSJ Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1 Back     alignment and function description
>sp|Q9LGU7|SPL1_ORYSJ Squamosa promoter-binding-like protein 1 OS=Oryza sativa subsp. japonica GN=SPL1 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z8M8|SPL15_ORYSJ Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica GN=SPL15 PE=2 SV=1 Back     alignment and function description
>sp|A2YX04|SPL15_ORYSI Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica GN=SPL15 PE=2 SV=1 Back     alignment and function description
>sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3 Back     alignment and function description
>sp|Q700C2|SPL16_ARATH Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2 Back     alignment and function description
>sp|P93015|SPL3_ARATH Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana GN=SPL3 PE=1 SV=2 Back     alignment and function description
>sp|Q38740|SBP2_ANTMA Squamosa promoter-binding protein 2 OS=Antirrhinum majus GN=SBP2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query766
255548291 1012 conserved hypothetical protein [Ricinus 1.0 0.756 0.725 0.0
225437714 997 PREDICTED: squamosa promoter-binding-lik 0.986 0.758 0.718 0.0
359480217 963 PREDICTED: squamosa promoter-binding-lik 0.958 0.762 0.713 0.0
356499594 1010 PREDICTED: squamosa promoter-binding-lik 0.989 0.750 0.665 0.0
449461697 1013 PREDICTED: squamosa promoter-binding-lik 0.993 0.751 0.646 0.0
449518123 1014 PREDICTED: LOW QUALITY PROTEIN: squamosa 0.993 0.750 0.644 0.0
357442095 1003 SQUAMOSA promoter binding protein [Medic 0.981 0.749 0.649 0.0
297744051860 unnamed protein product [Vitis vinifera] 0.887 0.790 0.659 0.0
225432161 1029 PREDICTED: squamosa promoter-binding-lik 0.989 0.736 0.581 0.0
357511495 994 SQUAMOSA promoter binding protein [Medic 0.949 0.731 0.613 0.0
>gi|255548291|ref|XP_002515202.1| conserved hypothetical protein [Ricinus communis] gi|223545682|gb|EEF47186.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1113 bits (2880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/794 (72%), Positives = 651/794 (81%), Gaps = 28/794 (3%)

Query: 1   METRFRGEA--HHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQ 58
           ME RF GEA  HHFYGM++ DLRAV K++LEWDLNDWKWDGDLFIAS LNP P+ N+ RQ
Sbjct: 1   MEARFGGEAQAHHFYGMSAADLRAVEKRSLEWDLNDWKWDGDLFIASPLNPVPSSNMSRQ 60

Query: 59  FFPLAVGNSSNSSSSCS-----DEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSL 113
           FFP+A G  +N +SS S     DEVNLGIE GKRE+EK+RR +V+ED N  +   G LSL
Sbjct: 61  FFPIATGTPTNGNSSNSSSSCSDEVNLGIEKGKRELEKRRRVIVIEDDNLNDEGVGSLSL 120

Query: 114 KLGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCE 173
           KLGG+G P+SERE+GNW G+SGKKTK  GGS SRAVCQVEDCGADLS+AKDYHRRHKVCE
Sbjct: 121 KLGGHGFPVSEREIGNWEGNSGKKTKLVGGSMSRAVCQVEDCGADLSSAKDYHRRHKVCE 180

Query: 174 MHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGS 233
           MHSKAS+ALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPD V N S
Sbjct: 181 MHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDTVGNAS 240

Query: 234 SPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQ 293
           + N++QTS YLLISLL+ILSNMHS+RSDQ TDQDLLSHLLR LAS + E+GG+ +SGLLQ
Sbjct: 241 TLNDEQTSSYLLISLLKILSNMHSNRSDQVTDQDLLSHLLRSLASQSMEHGGKKLSGLLQ 300

Query: 294 EHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARG----- 348
           E + +LN  TS  NSEV   F+ N  G     +  L    S M Q+V   H A G     
Sbjct: 301 EPRALLNGGTSFRNSEVFLTFILNALGLLRSLKLHLIVPFSGMSQRVLCSHGANGPNVQT 360

Query: 349 ---------------AEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSS 393
                          +E +D    Q+KMNNFDLND+YIDSDDG ED+ERSPVP N+GTSS
Sbjct: 361 SSSMKPSIPNNYPAYSEVRDSTAVQVKMNNFDLNDIYIDSDDGAEDIERSPVPTNMGTSS 420

Query: 394 IDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSS-SDAQSRTDRIVFKLFGKEPNDFPLV 452
           +DCPSW++QDS QSSPPQTSGNSDSASAQSPSSS  DAQSRTDRI+FKLFGKEPNDFPLV
Sbjct: 421 LDCPSWIQQDSHQSSPPQTSGNSDSASAQSPSSSSGDAQSRTDRIIFKLFGKEPNDFPLV 480

Query: 453 LRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSF 512
           LRAQILDWLSHSP+D+ESYIRPGCVILTIYLRQAEAAWEELCC+L+ SLSRLLD+S+++F
Sbjct: 481 LRAQILDWLSHSPTDIESYIRPGCVILTIYLRQAEAAWEELCCNLSSSLSRLLDVSDNAF 540

Query: 513 WTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGIN 572
           W +GW Y RVQHQIAFIYNGQVV+DTSLP RSNN+SKI SVKPIA+PA+ERAQF +KGIN
Sbjct: 541 WRTGWAYIRVQHQIAFIYNGQVVVDTSLPLRSNNHSKIASVKPIAIPAAERAQFVIKGIN 600

Query: 573 LGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIED 632
           L R ATRLLCAVEGKYM+QE T E++DD+D     DELQC+ F CSIP V+GRGFIEIED
Sbjct: 601 LSRPATRLLCAVEGKYMLQENTEEMMDDIDNINAHDELQCIKFCCSIPMVSGRGFIEIED 660

Query: 633 HGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLF 692
           HGFSS+FFPFIVAEEDVC EIRMLE  LEF  TDAD+   GKI+ KNQAMDFI+EIGWL 
Sbjct: 661 HGFSSSFFPFIVAEEDVCLEIRMLEGTLEFVGTDADLGGSGKIEAKNQAMDFINEIGWLL 720

Query: 693 HRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSL 752
           HRSQ  SRLGHL+P TDLFPL RFKWL+EFSMDHEWCAVV KLL+IL +G V  GEH SL
Sbjct: 721 HRSQLHSRLGHLNPCTDLFPLSRFKWLMEFSMDHEWCAVVTKLLNILHNGIVGTGEHSSL 780

Query: 753 DLALTELGLLHRAV 766
           +LAL+E+GLLHRAV
Sbjct: 781 NLALSEMGLLHRAV 794

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437714|ref|XP_002273228.1| PREDICTED: squamosa promoter-binding-like protein 12-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359480217|ref|XP_003632418.1| PREDICTED: squamosa promoter-binding-like protein 12-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356499594|ref|XP_003518623.1| PREDICTED: squamosa promoter-binding-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449461697|ref|XP_004148578.1| PREDICTED: squamosa promoter-binding-like protein 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449518123|ref|XP_004166093.1| PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357442095|ref|XP_003591325.1| SQUAMOSA promoter binding protein [Medicago truncatula] gi|355480373|gb|AES61576.1| SQUAMOSA promoter binding protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297744051|emb|CBI37021.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225432161|ref|XP_002274934.1| PREDICTED: squamosa promoter-binding-like protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357511495|ref|XP_003626036.1| SQUAMOSA promoter binding protein [Medicago truncatula] gi|355501051|gb|AES82254.1| SQUAMOSA promoter binding protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query766
TAIR|locus:2101402 927 SPL12 "squamosa promoter-bindi 0.668 0.552 0.573 2.8e-165
TAIR|locus:2041329 881 SPL1 "squamosa promoter bindin 0.629 0.547 0.507 1.3e-137
TAIR|locus:2011706 988 AT1G76580 [Arabidopsis thalian 0.413 0.320 0.339 2.8e-78
TAIR|locus:2037355 1035 SPL14 "squamosa promoter bindi 0.419 0.310 0.336 4.7e-76
TAIR|locus:504956101333 SPL8 "squamosa promoter bindin 0.105 0.243 0.691 3.9e-27
TAIR|locus:2057656131 SPL3 "squamosa promoter bindin 0.103 0.603 0.683 5e-27
TAIR|locus:2087105181 SPL5 "squamosa promoter bindin 0.110 0.469 0.658 6.5e-27
TAIR|locus:2059974375 SPL9 "squamosa promoter bindin 0.105 0.216 0.641 1.4e-26
TAIR|locus:2009675174 SPL4 "squamosa promoter bindin 0.110 0.488 0.651 1.7e-26
TAIR|locus:2026428405 AT1G69170 [Arabidopsis thalian 0.097 0.185 0.706 2.9e-26
TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1496 (531.7 bits), Expect = 2.8e-165, Sum P(2) = 2.8e-165
 Identities = 303/528 (57%), Positives = 377/528 (71%)

Query:   147 RAVC-QVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDE 205
             RA+C QV++CGADLS  KDYHRRHKVCE+HSKA+ ALVG +MQRFCQQCSRFHVL+EFDE
Sbjct:   123 RAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDE 182

Query:   206 GKRSCRRRLAGHNKRRRKTNPDAVANGSSPNNDQTSGYLLISLLRILSNMHSSRSDQRTD 265
             GKRSCRRRLAGHNKRRRK NPD + NG+S ++DQTS Y+LI+LL+ILSN+HS++SDQ  D
Sbjct:   183 GKRSCRRRLAGHNKRRRKANPDTIGNGTSMSDDQTSNYMLITLLKILSNIHSNQSDQTGD 242

Query:   266 QDLLSHLLRGLASPAGENGGRGISGLLQEHQDMLNERTSAGNSEVVQAFLANGQGCPTPF 325
             QDLLSHLL+ L S AGE+ GR + GLLQ     L    + GN   + A L+  Q    P 
Sbjct:   243 QDLLSHLLKSLVSQAGEHIGRNLVGLLQGGGG-LQASQNIGN---LSALLSLEQA---PR 295

Query:   326 RQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERS-P 384
                 + +VSE P Q    + A+     D +  Q+K+N+FDLND+YIDSDD T D+ERS P
Sbjct:   296 EDIKHHSVSETPWQEVYANSAQERVAPDRSEKQVKVNDFDLNDIYIDSDD-TTDIERSSP 354

Query:   385 VPANLGTSSIDCPSWVRXXXXXXXXXXXXGNXXXXXXXXXXXXXXXXXRTDRIVFKLFGK 444
              P N  TSS+D     R             +                 RTDRIVFKLFGK
Sbjct:   355 PPTNPATSSLDYHQDSRQSSPPQTSRR--NSDSASDQSPSSSSGDAQSRTDRIVFKLFGK 412

Query:   445 EPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFXXXXX 504
             EPNDFP+ LR QIL+WL+H+P+DMESYIRPGC++LTIYLRQ EA+WEELCCDL+F     
Sbjct:   413 EPNDFPVALRGQILNWLAHTPTDMESYIRPGCIVLTIYLRQDEASWEELCCDLSFSLRRL 472

Query:   505 XXXXXXXFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERA 564
                     WT GW+Y RVQ+Q+AF +NGQVVLDTSLP RS++YS+I++V+P+AV  +++A
Sbjct:   473 LDLSDDPLWTDGWLYLRVQNQLAFAFNGQVVLDTSLPLRSHDYSQIITVRPLAV--TKKA 530

Query:   565 QFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTG 624
             QF VKGINL R  TRLLC VEG ++VQEAT   +++ D  KE +E+  VNFSC +P  +G
Sbjct:   531 QFTVKGINLRRPGTRLLCTVEGTHLVQEATQGGMEERDDLKENNEIDFVNFSCEMPIASG 590

Query:   625 RGFIEIEDHG-FSSTFFPFIVAE-EDVCSEIRMLESALEFNRTDADVE 670
             RGF+EIED G  SS+FFPFIV+E ED+CSEIR LES LEF  TD+ ++
Sbjct:   591 RGFMEIEDQGGLSSSFFPFIVSEDEDICSEIRRLESTLEFTGTDSAMQ 638
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2041329 SPL1 "squamosa promoter binding protein-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011706 AT1G76580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037355 SPL14 "squamosa promoter binding protein-like 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956101 SPL8 "squamosa promoter binding protein-like 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057656 SPL3 "squamosa promoter binding protein-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087105 SPL5 "squamosa promoter binding protein-like 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059974 SPL9 "squamosa promoter binding protein-like 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009675 SPL4 "squamosa promoter binding protein-like 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9S7P5SPL12_ARATHNo assigned EC number0.57560.92420.7637yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019711001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (977 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query766
pfam0311079 pfam03110, SBP, SBP domain 3e-52
>gnl|CDD|190527 pfam03110, SBP, SBP domain Back     alignment and domain information 
 Score =  175 bits (445), Expect = 3e-52
 Identities = 64/79 (81%), Positives = 68/79 (86%)

Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
            CQVE CGADLSNAKDYHRRHKVCE+HSKA   LV  + QRFCQQCSRFH+L EFDEGKR
Sbjct: 1   RCQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKR 60

Query: 209 SCRRRLAGHNKRRRKTNPD 227
           SCRRRLAGHN+RRRK  PD
Sbjct: 61  SCRRRLAGHNERRRKPQPD 79

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 766
PF0311079 SBP: SBP domain; InterPro: IPR004333 The SBP plant 100.0
PF0183385 TIG: IPT/TIG domain; InterPro: IPR002909 This fami 84.19
cd0060390 IPT_PCSR IPT domain of Plexins and Cell Surface Re 81.96
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain [] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-36  Score=263.08  Aligned_cols=78  Identities=65%  Similarity=1.133  Sum_probs=63.2

Q ss_pred             ceeccCCchhhccCchhhcccccchhhcCcceeeeCCchhhhhhhhccCccCccccCCcchHHHHHhhHhhhhccCCC
Q 004246          149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP  226 (766)
Q Consensus       149 ~CqV~gC~~dL~~~k~Y~rR~rvCe~H~kA~~v~~~G~~~RFCQQC~rFH~L~eFd~~krSCr~~L~~hn~RRRk~~~  226 (766)
                      +||||||++||+.+|.||+||||||.|+||++|+++|.++||||||+|||+|+||||+|||||++|++||+||||+++
T Consensus         1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~   78 (79)
T PF03110_consen    1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ   78 (79)
T ss_dssp             C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred             CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999999875

Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold Back     alignment and domain information
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query766
1ul4_A94 Solution Structure Of The Dna-Binding Domain Of Squ 3e-26
1wj0_A60 Solution Structure Of The Dna-Binding Domain Of Squ 4e-24
1ul5_A88 Solution Structure Of The Dna-binding Domain Of Squ 3e-20
>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94 Back     alignment and structure 
Iteration: 1

 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 62/75 (82%)
Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
           +CQV+ C AD+  AK YHRRHKVCE+H+KAS   +  + QRFCQQCSRFH LQEFDE KR
Sbjct: 10  LCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKR 69
Query: 209 SCRRRLAGHNKRRRK 223
           SCRRRLAGHN+RRRK
Sbjct: 70  SCRRRLAGHNERRRK 84
>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60 Back     alignment and structure
>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query766
1ul4_A94 SPL4, squamosa promoter binding protein-like 4; tr 1e-40
1ul5_A88 SPL7, squamosa promoter binding protein-like 7; tr 6e-38
1wj0_A60 Squamosa promoter-binding protein-like 12; DNA-bin 6e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94 Back     alignment and structure
 Score =  142 bits (360), Expect = 1e-40
 Identities = 57/91 (62%), Positives = 70/91 (76%)

Query: 142 GGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQ 201
            GSS   +CQV+ C AD+  AK YHRRHKVCE+H+KAS   +  + QRFCQQCSRFH LQ
Sbjct: 3   SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQ 62

Query: 202 EFDEGKRSCRRRLAGHNKRRRKTNPDAVANG 232
           EFDE KRSCRRRLAGHN+RRRK++ ++  + 
Sbjct: 63  EFDEAKRSCRRRLAGHNERRRKSSGESGPSS 93
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88 Back     alignment and structure
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 60 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query766
1ul4_A94 SPL4, squamosa promoter binding protein-like 4; tr 100.0
1ul5_A88 SPL7, squamosa promoter binding protein-like 7; tr 100.0
1wj0_A60 Squamosa promoter-binding protein-like 12; DNA-bin 99.95
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Back     alignment and structure
Probab=100.00  E-value=7.9e-40  Score=291.44  Aligned_cols=90  Identities=63%  Similarity=1.075  Sum_probs=80.4

Q ss_pred             CCCCCCCceeccCCchhhccCchhhcccccchhhcCcceeeeCCchhhhhhhhccCccCccccCCcchHHHHHhhHhhhh
Q 004246          142 GGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRR  221 (766)
Q Consensus       142 ~~~~~~~~CqV~gC~~dL~~~k~Y~rR~rvCe~H~kA~~v~~~G~~~RFCQQC~rFH~L~eFd~~krSCr~~L~~hn~RR  221 (766)
                      +++++.++|||+||++||+.+|.||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||+||++||+||
T Consensus         3 ~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RR   82 (94)
T 1ul4_A            3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR   82 (94)
T ss_dssp             -----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCC
T ss_pred             CCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHh
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCcCC
Q 004246          222 RKTNPDAVAN  231 (766)
Q Consensus       222 Rk~~~~~~~~  231 (766)
                      ||+++++...
T Consensus        83 Rk~~~~~~~~   92 (94)
T 1ul4_A           83 RKSSGESGPS   92 (94)
T ss_dssp             CSCCCC----
T ss_pred             ccCCCCcCCC
Confidence            9999987643
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Back     alignment and structure
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 766
d1ul4a_81 g.72.1.1 (A:) Squamosa promoter binding protein-li 2e-45
d1ul5a_86 g.72.1.1 (A:) Squamosa promoter binding protein-li 3e-45
d1wj0a_58 g.72.1.1 (A:) Squamosa-promoter binding-like prote 4e-33
>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81 Back     information, alignment and structure

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  154 bits (391), Expect = 2e-45
 Identities = 54/79 (68%), Positives = 65/79 (82%)

Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
           +CQV+ C AD+  AK YHRRHKVCE+H+KAS   +  + QRFCQQCSRFH LQEFDE KR
Sbjct: 3   LCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKR 62

Query: 209 SCRRRLAGHNKRRRKTNPD 227
           SCRRRLAGHN+RRRK++ +
Sbjct: 63  SCRRRLAGHNERRRKSSGE 81
>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86 Back     information, alignment and structure
>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query766
d1ul5a_86 Squamosa promoter binding protein-like 7, DNA-bind 100.0
d1ul4a_81 Squamosa promoter binding protein-like 4, DNA-bind 100.0
d1wj0a_58 Squamosa-promoter binding-like protein 12, DNA-bin 99.95
d1qhoa181 Five domain "maltogenic" alpha-amylase (glucan 1,4 87.25
d2cxka182 Calmodulin binding transcription activator 1 {Huma 81.97
>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5.9e-39  Score=279.15  Aligned_cols=83  Identities=51%  Similarity=0.950  Sum_probs=81.0

Q ss_pred             CceeccCCchhhccCchhhcccccchhhcCcceeeeCCchhhhhhhhccCccCccccCCcchHHHHHhhHhhhhccCCCC
Q 004246          148 AVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPD  227 (766)
Q Consensus       148 ~~CqV~gC~~dL~~~k~Y~rR~rvCe~H~kA~~v~~~G~~~RFCQQC~rFH~L~eFd~~krSCr~~L~~hn~RRRk~~~~  227 (766)
                      ++||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||.||||++++
T Consensus         2 ~rCqV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (86)
T d1ul5a_           2 ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPVD   81 (86)
T ss_dssp             CSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSCS
T ss_pred             CeeeeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhccccChhhhccccccHHHHHHHHHHHhccCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CcC
Q 004246          228 AVA  230 (766)
Q Consensus       228 ~~~  230 (766)
                      +.+
T Consensus        82 ~~g   84 (86)
T d1ul5a_          82 KGG   84 (86)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            765
>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription activator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure