Citrus Sinensis ID: 004271

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760----
MGVVDMSNNPPTSRTKDFFASPALSLSLAGIFRGAGASAAANNEVEEGYEGSGGAGGGSKREETTVEISSENSGHTRSRSDADFDGGGDGDDDDGDGDGDDDSKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAVGKCPPGATSTSSCSAGNDQENRSSLDFYTGIFGIDKSRIMELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCERLVFFMATNVPTKDSSGVATLAGRKSILKLAQRMTWSFCRAIGASSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLAKGQDRGNAVNIQTMKSKENSMWLLQDSYTNAYESMVVYAPVDITGMQSVITGCDSSNIAILPSGFSILPDGLESRPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVDSVNTLISCTLRNIKTSLQCEDA
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHcccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccHHHHHccccccccccccccccEEEECcCEEEEEcHHHHHHHHccHHHHHHHcHHccccccccEEECcccccccccHHHHHHHHHHcccccccccEEEEEEEEEEcccccEEEEEEcccccccccccccccCCccccccEEEEcccccEEEEEEEEEEEccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEcccccccccccEEEEEEEEccccccHHHHHHHHcccccccHHHHHcccccccEEEEcccccccccEEEEEEcccccccEEEEEcccccccccEEEEcccccccHHccccccccccccccccccEEccccccccccccccccccccccccccEEHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccc
***********************L*L*LA****************************************************************************************AEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQI**********LLKSEIEKLREENKAM*****KACCPNC****************************************************************TGIFGIDKSRIMELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKS*RSIEASRDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCERLVFFMATNVPTKDSSGVATLAGRKSILKLAQRMTWSFCRAIGASSYHVWNKVTSKTGEDIRVSSRKN*****EPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLAKGQDRGNAVNIQTMKSKENSMWLLQDSYTNAYESMVVYAPVDITGMQSVITGCDSSNIAILPSGFSILPDG*****************EGGSLLSIAFQILTNNSPAAKLTMESVDSVNTLISCTLRNIKTSLQC***
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MGVVDMSNNPPTSRTKDFFASPALSLSLAGIFRGAGASAAANNEVEEGYEGSGGAGGGSKREETTVEISSENSGHTRSRSDADFDGGGDGDDDDGDGDGDDDSKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACCPNCGMATTSRDTSMTTExxxxxxxxxxxxxxxxxxxxxVGKCPPGATSTSSCSAGNDQENRSSLDFYTGIFGIDKSRIMELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCERLVFFMATNVPTKDSSGVATLAGRKSILKLAQRMTWSFCRAIGASSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLAKGQDRGNAVNIQTMKSKENSMWLLQDSYTNAYESMVVYAPVDITGMQSVITGCDSSNIAILPSGFSILPDGLESRPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVDSVNTLISCTLRNIKTSLQCEDA

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Homeobox-leucine zipper protein GLABRA 2 Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing.probableP46607
Homeobox-leucine zipper protein ROC9 Probable transcription factor.probableQ5JMF3
Homeobox-leucine zipper protein ROC1 Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis.probableQ6ZAR0

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2DMQ, chain A
Confidence level:very confident
Coverage over the Query: 107-172
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Template: 2R55, chain A
Confidence level:confident
Coverage over the Query: 273-504
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Template: 2R55, chain A
Confidence level:probable
Coverage over the Query: 525-697,715-760
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Template: 3FO5, chain A
Confidence level:probable
Coverage over the Query: 490-697
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Template: 1NLW, chain A
Confidence level:probable
Coverage over the Query: 158-233
View the alignment between query and template
View the model in PyMOL