Citrus Sinensis ID: 004271
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 764 | 2.2.26 [Sep-21-2011] | |||||||
| P46607 | 747 | Homeobox-leucine zipper p | yes | no | 0.962 | 0.983 | 0.655 | 0.0 | |
| Q5JMF3 | 816 | Homeobox-leucine zipper p | yes | no | 0.977 | 0.915 | 0.493 | 0.0 | |
| Q0WV12 | 802 | Homeobox-leucine zipper p | no | no | 0.941 | 0.896 | 0.450 | 0.0 | |
| Q93V99 | 743 | Homeobox-leucine zipper p | no | no | 0.892 | 0.917 | 0.443 | 1e-176 | |
| Q6ZAR0 | 784 | Homeobox-leucine zipper p | yes | no | 0.899 | 0.876 | 0.436 | 1e-174 | |
| Q9M2E8 | 808 | Homeobox-leucine zipper p | no | no | 0.884 | 0.836 | 0.440 | 1e-173 | |
| Q8RWU4 | 762 | Homeobox-leucine zipper p | no | no | 0.856 | 0.858 | 0.440 | 1e-173 | |
| Q0J9X2 | 784 | Homeobox-leucine zipper p | no | no | 0.896 | 0.873 | 0.436 | 1e-172 | |
| A2YR02 | 749 | Homeobox-leucine zipper p | N/A | no | 0.839 | 0.855 | 0.457 | 1e-172 | |
| A3BPF2 | 749 | Homeobox-leucine zipper p | no | no | 0.837 | 0.854 | 0.457 | 1e-171 |
| >sp|P46607|HGL2_ARATH Homeobox-leucine zipper protein GLABRA 2 OS=Arabidopsis thaliana GN=GL2 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 994 bits (2569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/767 (65%), Positives = 604/767 (78%), Gaps = 32/767 (4%)
Query: 4 VDMSNNPPTSRTKDFFASPALSLSLAGIFRGAGASAAANNEVEEGYEGSGGAGGGSKREE 63
VDMS+ PT KDFF+SPALSLSLAGIFR A ++ + EE + G E+
Sbjct: 5 VDMSSKQPT---KDFFSSPALSLSLAGIFRNA---SSGSTNPEEDFLGRRVVDD----ED 54
Query: 64 TTVEISSENSGHTRSRSDADFDGGGDGDDDDGDGDGDDDSK-NKKKKRKKYHRHTAEQIR 122
TVE+SSENSG TRSRS+ D +G D+++ + DG +K K+KRKKYHRHT +QIR
Sbjct: 55 RTVEMSSENSGPTRSRSEEDLEGEDHDDEEEEEEDGAAGNKGTNKRKRKKYHRHTTDQIR 114
Query: 123 EMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEK 182
MEALFKE+PHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK IQERHENSLLK+E+EK
Sbjct: 115 HMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKAELEK 174
Query: 183 LREENKAMREAINKA--CCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAVGK 240
LREENKAMRE+ +KA CPNCG L +EN++LKAE++KLRAA+G+
Sbjct: 175 LREENKAMRESFSKANSSCPNCGGGP-----------DDLHLENSKLKAELDKLRAALGR 223
Query: 241 CPPGATSTSSCSAGNDQENR-SSLDFYTGIFGIDKSRIMELVNQGMEELKKMATAGGPLW 299
P +SCS +DQE+R SLDFYTG+F ++KSRI E+ N+ EL+KMAT+G P+W
Sbjct: 224 TP--YPLQASCS--DDQEHRLGSLDFYTGVFALEKSRIAEISNRATLELQKMATSGEPMW 279
Query: 300 IRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQSFTDVNQW 359
+RS+ETGREILNYDEY+KEF +S+ ++IEASRDAG+VF+D KL QSF DV QW
Sbjct: 280 LRSVETGREILNYDEYLKEFPQAQASSFPGRKTIEASRDAGIVFMDAHKLAQSFMDVGQW 339
Query: 360 KAMFPCLISKAATVDVICGGEGPNR-NGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSA 418
K F CLISKAATVDVI GEGP+R +GA+QLMF E+Q+LTP+VPTREVYFVR C+QLS
Sbjct: 340 KETFACLISKAATVDVIRQGEGPSRIDGAIQLMFGEMQLLTPVVPTREVYFVRSCRQLSP 399
Query: 419 EQWAIVDVSIDKVEENID--ASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHT 476
E+WAIVDVS+ + N + ASL KCRK PSGCI+ED SNGH KVTWVEHL+ TV
Sbjct: 400 EKWAIVDVSVSVEDSNTEKEASLLKCRKLPSGCIIEDTSNGHSKVTWVEHLDVSASTVQP 459
Query: 477 MYRSIVSSGLAFGARHWMTTLQLQCERLVFFMATNVPTKDSSGVATLAGRKSILKLAQRM 536
++RS+V++GLAFGARHW+ TLQL CERLVFFMATNVPTKDS GV TLAGRKS+LK+AQRM
Sbjct: 460 LFRSLVNTGLAFGARHWVATLQLHCERLVFFMATNVPTKDSLGVTTLAGRKSVLKMAQRM 519
Query: 537 TWSFCRAIGASSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNV 596
T SF RAI ASSYH W K+T+KTG+D+RVSSRKNL+DPGEP GVI+CA SS+WLPVSP +
Sbjct: 520 TQSFYRAIAASSYHQWTKITTKTGQDMRVSSRKNLHDPGEPTGVIVCASSSLWLPVSPAL 579
Query: 597 LFDFLRDEAHRNEWDIMSNGGPVQTIANLAKGQDRGNAVNIQTMKSKENSMWLLQDSYTN 656
LFDF RDEA R+EWD +SNG VQ+IANL+KGQDRGN+V IQT+KS+E S+W+LQDS TN
Sbjct: 580 LFDFFRDEARRHEWDALSNGAHVQSIANLSKGQDRGNSVAIQTVKSREKSIWVLQDSSTN 639
Query: 657 AYESMVVYAPVDITGMQSVITGCDSSNIAILPSGFSILPDGLESRPLVITSRQEEKITEG 716
+YES+VVYAPVDI Q V+ G D SNI ILPSGFSI+PDG+ESRPLVITS Q+++ ++G
Sbjct: 640 SYESVVVYAPVDINTTQLVLAGHDPSNIQILPSGFSIIPDGVESRPLVITSTQDDRNSQG 699
Query: 717 GSLLSIAFQILTNNSPAAKLTMESVDSVNTLISCTLRNIKTSLQCED 763
GSLL++A Q L N SPAAKL MESV+SV L+S TL NIK SLQ ED
Sbjct: 700 GSLLTLALQTLINPSPAAKLNMESVESVTNLVSVTLHNIKRSLQIED 746
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Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5JMF3|ROC9_ORYSJ Homeobox-leucine zipper protein ROC9 OS=Oryza sativa subsp. japonica GN=ROC9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q0WV12|ANL2_ARATH Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q93V99|PDF2_ARATH Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6ZAR0|ROC1_ORYSJ Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica GN=ROC1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9M2E8|HDG1_ARATH Homeobox-leucine zipper protein HDG1 OS=Arabidopsis thaliana GN=HDG1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8RWU4|ATML1_ARATH Homeobox-leucine zipper protein MERISTEM L1 OS=Arabidopsis thaliana GN=ATML1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q0J9X2|ROC2_ORYSJ Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica GN=ROC2 PE=2 SV=1 | Back alignment and function description |
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| >sp|A2YR02|ROC7_ORYSI Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. indica GN=ROC7 PE=3 SV=1 | Back alignment and function description |
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| >sp|A3BPF2|ROC7_ORYSJ Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. japonica GN=ROC7 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 764 | ||||||
| 255549944 | 758 | homeobox protein, putative [Ricinus comm | 0.989 | 0.997 | 0.832 | 0.0 | |
| 356556218 | 747 | PREDICTED: homeobox-leucine zipper prote | 0.969 | 0.991 | 0.816 | 0.0 | |
| 225442611 | 754 | PREDICTED: homeobox-leucine zipper prote | 0.981 | 0.994 | 0.818 | 0.0 | |
| 297743262 | 750 | unnamed protein product [Vitis vinifera] | 0.977 | 0.996 | 0.817 | 0.0 | |
| 302398859 | 761 | HD domain class transcription factor [Ma | 0.988 | 0.992 | 0.807 | 0.0 | |
| 224073973 | 759 | predicted protein [Populus trichocarpa] | 0.990 | 0.997 | 0.828 | 0.0 | |
| 356550528 | 762 | PREDICTED: homeobox-leucine zipper prote | 0.986 | 0.989 | 0.811 | 0.0 | |
| 13346176 | 758 | BNLGHi8377 [Gossypium hirsutum] | 0.982 | 0.990 | 0.810 | 0.0 | |
| 22475195 | 753 | homeodomain protein GhHOX1 [Gossypium hi | 0.973 | 0.988 | 0.816 | 0.0 | |
| 224059096 | 761 | predicted protein [Populus trichocarpa] | 0.986 | 0.990 | 0.815 | 0.0 |
| >gi|255549944|ref|XP_002516023.1| homeobox protein, putative [Ricinus communis] gi|223544928|gb|EEF46443.1| homeobox protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1272 bits (3292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 636/764 (83%), Positives = 689/764 (90%), Gaps = 8/764 (1%)
Query: 1 MGVVDMSNNPPTSRTKDFFASPALSLSLAGIFRGAGASAAANNEVEEGYEGSGGAGGGSK 60
MGV DMSN PP+SRTKDFFASPALSLSLAGIFRGA A+ A +E G GGG +
Sbjct: 1 MGV-DMSN-PPSSRTKDFFASPALSLSLAGIFRGANAAGPATPAMEVEEGDEGSGGGGER 58
Query: 61 REET-TVEISSENSGHTRSRSDADFDGGGDGDDDDGDGDGDDDSKNKKKKRKKYHRHTAE 119
TVE+SSENSG RSRSD DFDG G+ +DDDG KNKKKKRKKYHRHTAE
Sbjct: 59 GRREETVEVSSENSGPMRSRSDDDFDGEGEHEDDDGGDGD---DKNKKKKRKKYHRHTAE 115
Query: 120 QIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSE 179
QIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK IQERHENSLLK+E
Sbjct: 116 QIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTE 175
Query: 180 IEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAVG 239
+EKLR+ENKAMRE INKACCPNCG ATTSRDTS+TTEEQQLRIENA+LK+EVEKLRAA+G
Sbjct: 176 MEKLRDENKAMRETINKACCPNCGTATTSRDTSLTTEEQQLRIENAKLKSEVEKLRAALG 235
Query: 240 KCPPGATSTSSCSAGNDQENRSSLDFYTGIFGIDKSRIMELVNQGMEELKKMATAGGPLW 299
K PPGA SCSAG++QENRSSLDFYTGIFG++KSRI E+ NQ MEEL KMATAG PLW
Sbjct: 236 KYPPGAAP--SCSAGSEQENRSSLDFYTGIFGLEKSRITEIANQAMEELNKMATAGEPLW 293
Query: 300 IRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQSFTDVNQW 359
IRS+ET REILNYDEY+KEF+ EN SNG+S +SIE SR+ GVVFVDLP+LVQSFTDVN W
Sbjct: 294 IRSVETDREILNYDEYIKEFNVENPSNGRSKKSIEVSRETGVVFVDLPRLVQSFTDVNHW 353
Query: 360 KAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSAE 419
K MFPCLISKAATVDVIC GEGPNR+GAVQLMFAE+QMLTPMVPTREVYFVRYCKQLSAE
Sbjct: 354 KEMFPCLISKAATVDVICNGEGPNRDGAVQLMFAEVQMLTPMVPTREVYFVRYCKQLSAE 413
Query: 420 QWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYR 479
QWAIVDVSID VE+NIDASL KCRKRPSGCI+EDKSNGHCKVTWVEHLECQK TVHT+YR
Sbjct: 414 QWAIVDVSIDNVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVTWVEHLECQKSTVHTIYR 473
Query: 480 SIVSSGLAFGARHWMTTLQLQCERLVFFMATNVPTKDSSGVATLAGRKSILKLAQRMTWS 539
+IV++GLAFGARHW+ TLQLQCER+VFFMATNVPTKDS+GVATLAGRKSILKLAQRMTWS
Sbjct: 474 TIVNTGLAFGARHWVATLQLQCERIVFFMATNVPTKDSTGVATLAGRKSILKLAQRMTWS 533
Query: 540 FCRAIGASSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFD 599
FCRAIGASSYH WN+VTSKTGEDIR+SSRKNLNDP EPLGVILCAVSSVWLPVSP+VLFD
Sbjct: 534 FCRAIGASSYHTWNRVTSKTGEDIRISSRKNLNDPAEPLGVILCAVSSVWLPVSPHVLFD 593
Query: 600 FLRDEAHRNEWDIMSNGGPVQTIANLAKGQDRGNAVNIQTMKSKENSMWLLQDSYTNAYE 659
+LRD+ HRNEWDIMSNGG VQ+IANLAKGQDRGNAV IQTMKS EN+MW+LQD TNAYE
Sbjct: 594 YLRDDTHRNEWDIMSNGGQVQSIANLAKGQDRGNAVTIQTMKSNENNMWVLQDCCTNAYE 653
Query: 660 SMVVYAPVDITGMQSVITGCDSSNIAILPSGFSILPDGLESRPLVITSRQEEKITEGGSL 719
S+VVYAPVDI GMQSVITGCDSS+ AILPSGF+ILPDGLE+R LVITSR+EEK TEGGSL
Sbjct: 654 SIVVYAPVDINGMQSVITGCDSSSTAILPSGFAILPDGLETRALVITSRREEKRTEGGSL 713
Query: 720 LSIAFQILTNNSPAAKLTMESVDSVNTLISCTLRNIKTSLQCED 763
L++AFQILTN SP AKLTMESV+SVNTLISCTLRNIKTSLQCED
Sbjct: 714 LTVAFQILTNTSPTAKLTMESVESVNTLISCTLRNIKTSLQCED 757
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556218|ref|XP_003546423.1| PREDICTED: homeobox-leucine zipper protein GLABRA 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|225442611|ref|XP_002284502.1| PREDICTED: homeobox-leucine zipper protein GLABRA 2-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297743262|emb|CBI36129.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|302398859|gb|ADL36724.1| HD domain class transcription factor [Malus x domestica] | Back alignment and taxonomy information |
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| >gi|224073973|ref|XP_002304207.1| predicted protein [Populus trichocarpa] gi|222841639|gb|EEE79186.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356550528|ref|XP_003543638.1| PREDICTED: homeobox-leucine zipper protein GLABRA 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|13346176|gb|AAK19610.1|AF336277_1 BNLGHi8377 [Gossypium hirsutum] | Back alignment and taxonomy information |
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| >gi|22475195|gb|AAM97321.1| homeodomain protein GhHOX1 [Gossypium hirsutum] | Back alignment and taxonomy information |
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| >gi|224059096|ref|XP_002299713.1| predicted protein [Populus trichocarpa] gi|222846971|gb|EEE84518.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 764 | ||||||
| TAIR|locus:2119048 | 762 | ATML1 "AT4G21750" [Arabidopsis | 0.549 | 0.551 | 0.478 | 1.8e-160 | |
| TAIR|locus:2098866 | 808 | HDG1 "AT3G61150" [Arabidopsis | 0.632 | 0.597 | 0.464 | 8.8e-158 | |
| TAIR|locus:2127008 | 802 | ANL2 "ANTHOCYANINLESS 2" [Arab | 0.829 | 0.790 | 0.469 | 4.8e-157 | |
| TAIR|locus:2207235 | 721 | HDG2 "AT1G05230" [Arabidopsis | 0.827 | 0.876 | 0.451 | 6.9e-150 | |
| TAIR|locus:2135368 | 743 | PDF2 "AT4G04890" [Arabidopsis | 0.840 | 0.864 | 0.449 | 1.6e-148 | |
| TAIR|locus:2206880 | 722 | HDG11 "AT1G73360" [Arabidopsis | 0.655 | 0.693 | 0.377 | 5.4e-130 | |
| TAIR|locus:2030913 | 687 | HDG12 "homeodomain GLABROUS 12 | 0.612 | 0.681 | 0.387 | 1e-124 | |
| TAIR|locus:2062540 | 725 | HDG3 "AT2G32370" [Arabidopsis | 0.824 | 0.868 | 0.409 | 2.2e-121 | |
| TAIR|locus:2167230 | 718 | HDG9 "AT5G17320" [Arabidopsis | 0.619 | 0.658 | 0.332 | 4.1e-100 | |
| TAIR|locus:2097770 | 699 | HDG8 "AT3G03260" [Arabidopsis | 0.824 | 0.901 | 0.353 | 1.5e-99 |
| TAIR|locus:2119048 ATML1 "AT4G21750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1058 (377.5 bits), Expect = 1.8e-160, Sum P(3) = 1.8e-160
Identities = 205/428 (47%), Positives = 295/428 (68%)
Query: 273 DKSRIMELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRS 332
DK I+EL MEEL +MA G PLW+ S + EILN +EY + F RS
Sbjct: 256 DKPMIVELAVAAMEELVRMAQTGDPLWVSS-DNSVEILNEEEYFRTFPRGIGPKPIGLRS 314
Query: 333 IEASRDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMF 392
EASR++ VV ++ L++ DVNQW ++F ++S+A T++V+ G N NGA+Q+M
Sbjct: 315 -EASRESTVVIMNHINLIEILMDVNQWSSVFCGIVSRALTLEVLSTGVAGNYNGALQVMT 373
Query: 393 AELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVE 452
AE Q+ +P+VPTRE YFVRYCKQ S WA+VDVS+D + + + + R+RPSGC+++
Sbjct: 374 AEFQVPSPLVPTRENYFVRYCKQHSDGIWAVVDVSLDSLRPS---PITRSRRRPSGCLIQ 430
Query: 453 DKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCERLVFFMATNV 512
+ NG+ KVTWVEH+E +VH MY+ +V++GLAFGA+ W+ TL QCERL MA+N+
Sbjct: 431 ELQNGYSKVTWVEHIEVDDRSVHNMYKPLVNTGLAFGAKRWVATLDRQCERLASSMASNI 490
Query: 513 PTKDSSGVATLAGRKSILKLAQRMTWSFCRAIGASSYHVWNKVTSKTGEDIRVSSRKNLN 572
P D S + + GRKS+LKLA+RM SFC +GAS+ H W +++ +D+RV +RK+++
Sbjct: 491 PACDLSVITSPEGRKSMLKLAERMVMSFCTGVGASTAHAWTTLSTTGSDDVRVMTRKSMD 550
Query: 573 DPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLAKGQDRG 632
DPG P G++L A +S W+PV+P +FDFLRDE R+EWDI+SNGG VQ +A++A G+D G
Sbjct: 551 DPGRPPGIVLSAATSFWIPVAPKRVFDFLRDENSRSEWDILSNGGLVQEMAHIANGRDPG 610
Query: 633 NAVN---IQTMKSKENSMWLLQDSYTNAYESMVVYAPVDITGMQSVITGCDSSNIAILPS 689
N+V+ + + S +++M +LQ+S T+A S V+YAPVDI M V++G D +A+LPS
Sbjct: 611 NSVSLLRVNSGNSGQSNMLILQESCTDASGSYVIYAPVDIIAMNVVLSGGDPDYVALLPS 670
Query: 690 GFSILPDG 697
GF+ILPDG
Sbjct: 671 GFAILPDG 678
|
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| TAIR|locus:2098866 HDG1 "AT3G61150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2127008 ANL2 "ANTHOCYANINLESS 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2207235 HDG2 "AT1G05230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2135368 PDF2 "AT4G04890" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2206880 HDG11 "AT1G73360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2030913 HDG12 "homeodomain GLABROUS 12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2062540 HDG3 "AT2G32370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2167230 HDG9 "AT5G17320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2097770 HDG8 "AT3G03260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6ZAR0 | ROC1_ORYSJ | No assigned EC number | 0.4360 | 0.8992 | 0.8762 | yes | no |
| P46607 | HGL2_ARATH | No assigned EC number | 0.6558 | 0.9620 | 0.9839 | yes | no |
| Q5JMF3 | ROC9_ORYSJ | No assigned EC number | 0.4939 | 0.9777 | 0.9154 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pg.C_LG_III0408 | hypothetical protein (759 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 764 | |||
| cd08875 | 229 | cd08875, START_ArGLABRA2_like, C-terminal lipid-bi | 1e-110 | |
| pfam01852 | 205 | pfam01852, START, START domain | 1e-59 | |
| smart00234 | 205 | smart00234, START, in StAR and phosphatidylcholine | 8e-51 | |
| pfam00046 | 57 | pfam00046, Homeobox, Homeobox domain | 2e-22 | |
| cd00086 | 59 | cd00086, homeodomain, Homeodomain; DNA binding dom | 4e-19 | |
| smart00389 | 57 | smart00389, HOX, Homeodomain | 6e-19 | |
| COG5576 | 156 | COG5576, COG5576, Homeodomain-containing transcrip | 2e-13 | |
| cd00177 | 193 | cd00177, START, Lipid-binding START domain of mamm | 3e-06 | |
| pfam05920 | 40 | pfam05920, Homeobox_KN, Homeobox KN domain | 0.003 |
| >gnl|CDD|176884 cd08875, START_ArGLABRA2_like, C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins | Back alignment and domain information |
|---|
Score = 333 bits (856), Expect = e-110
Identities = 119/230 (51%), Positives = 157/230 (68%), Gaps = 2/230 (0%)
Query: 274 KSRIMELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSI 333
KS ++EL + M+EL K+A G PLWI+S EILN DEY + F + + +
Sbjct: 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPR-HGGSKPGGFTT 59
Query: 334 EASRDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFA 393
EASR G+V ++ KLV+ DVN+W +FP ++SKA T+ VI G G NRNG +QLM+A
Sbjct: 60 EASRACGLVMMNAIKLVEILMDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYA 119
Query: 394 ELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEE-NIDASLAKCRKRPSGCIVE 452
ELQ+ +P+VPTRE YF+RYCKQL WA+VDVSID V+ AS +CR+ PSGC+++
Sbjct: 120 ELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQ 179
Query: 453 DKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCE 502
D NG+ KVTWVEH+E + VH +YR +VSSGLAFGA W+ TLQ QCE
Sbjct: 180 DMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells. Length = 229 |
| >gnl|CDD|216740 pfam01852, START, START domain | Back alignment and domain information |
|---|
| >gnl|CDD|214575 smart00234, START, in StAR and phosphatidylcholine transfer protein | Back alignment and domain information |
|---|
| >gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain | Back alignment and domain information |
|---|
| >gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner | Back alignment and domain information |
|---|
| >gnl|CDD|197696 smart00389, HOX, Homeodomain | Back alignment and domain information |
|---|
| >gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|176851 cd00177, START, Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 764 | |||
| cd08875 | 229 | START_ArGLABRA2_like C-terminal lipid-binding STAR | 100.0 | |
| PF01852 | 206 | START: START domain; InterPro: IPR002913 START (St | 99.76 | |
| smart00234 | 206 | START in StAR and phosphatidylcholine transfer pro | 99.74 | |
| KOG0842 | 307 | consensus Transcription factor tinman/NKX2-3, cont | 99.69 | |
| KOG0488 | 309 | consensus Transcription factor BarH and related HO | 99.64 | |
| KOG0483 | 198 | consensus Transcription factor HEX, contains HOX a | 99.63 | |
| KOG0484 | 125 | consensus Transcription factor PHOX2/ARIX, contain | 99.63 | |
| KOG0485 | 268 | consensus Transcription factor NKX-5.1/HMX1, conta | 99.61 | |
| KOG0494 | 332 | consensus Transcription factor CHX10 and related H | 99.6 | |
| KOG0843 | 197 | consensus Transcription factor EMX1 and related HO | 99.58 | |
| KOG0489 | 261 | consensus Transcription factor zerknullt and relat | 99.57 | |
| KOG0487 | 308 | consensus Transcription factor Abd-B, contains HOX | 99.56 | |
| KOG2251 | 228 | consensus Homeobox transcription factor [Transcrip | 99.54 | |
| KOG0493 | 342 | consensus Transcription factor Engrailed, contains | 99.53 | |
| KOG0850 | 245 | consensus Transcription factor DLX and related pro | 99.52 | |
| KOG0492 | 246 | consensus Transcription factor MSH, contains HOX d | 99.5 | |
| KOG0844 | 408 | consensus Transcription factor EVX1, contains HOX | 99.48 | |
| KOG0848 | 317 | consensus Transcription factor Caudal, contains HO | 99.46 | |
| PF00046 | 57 | Homeobox: Homeobox domain not present here.; Inter | 99.45 | |
| KOG0486 | 351 | consensus Transcription factor PTX1, contains HOX | 99.36 | |
| TIGR01565 | 58 | homeo_ZF_HD homeobox domain, ZF-HD class. This mod | 99.32 | |
| KOG0491 | 194 | consensus Transcription factor BSH, contains HOX d | 99.31 | |
| smart00389 | 56 | HOX Homeodomain. DNA-binding factors that are invo | 99.28 | |
| cd00086 | 59 | homeodomain Homeodomain; DNA binding domains invol | 99.27 | |
| cd00177 | 193 | START Lipid-binding START domain of mammalian STAR | 99.27 | |
| COG5576 | 156 | Homeodomain-containing transcription factor [Trans | 99.2 | |
| KOG4577 | 383 | consensus Transcription factor LIM3, contains LIM | 99.16 | |
| KOG0847 | 288 | consensus Transcription factor, contains HOX domai | 99.14 | |
| cd08871 | 222 | START_STARD10-like Lipid-binding START domain of m | 99.12 | |
| KOG3802 | 398 | consensus Transcription factor OCT-1, contains POU | 99.09 | |
| cd08868 | 208 | START_STARD1_3_like Cholesterol-binding START doma | 99.06 | |
| cd08867 | 206 | START_STARD4_5_6-like Lipid-binding START domain o | 99.03 | |
| KOG0490 | 235 | consensus Transcription factor, contains HOX domai | 99.0 | |
| cd08904 | 204 | START_STARD6-like Lipid-binding START domain of ma | 98.87 | |
| KOG0849 | 354 | consensus Transcription factor PRD and related pro | 98.86 | |
| cd08903 | 208 | START_STARD5-like Lipid-binding START domain of ma | 98.76 | |
| cd08869 | 197 | START_RhoGAP C-terminal lipid-binding START domain | 98.65 | |
| cd08905 | 209 | START_STARD1-like Cholesterol-binding START domain | 98.61 | |
| cd08909 | 205 | START_STARD13-like C-terminal lipid-binding START | 98.55 | |
| PLN00188 | 719 | enhanced disease resistance protein (EDR2); Provis | 98.47 | |
| cd08902 | 202 | START_STARD4-like Lipid-binding START domain of ma | 98.44 | |
| cd08906 | 209 | START_STARD3-like Cholesterol-binding START domain | 98.43 | |
| KOG1168 | 385 | consensus Transcription factor ACJ6/BRN-3, contain | 98.26 | |
| KOG0775 | 304 | consensus Transcription factor SIX and related HOX | 98.25 | |
| cd08908 | 204 | START_STARD12-like C-terminal lipid-binding START | 98.19 | |
| cd08910 | 207 | START_STARD2-like Lipid-binding START domain of ma | 98.09 | |
| cd08877 | 215 | START_2 Uncharacterized subgroup of the steroidoge | 98.07 | |
| cd08870 | 209 | START_STARD2_7-like Lipid-binding START domain of | 97.9 | |
| cd08876 | 195 | START_1 Uncharacterized subgroup of the steroidoge | 97.86 | |
| cd08874 | 205 | START_STARD9-like C-terminal START domain of mamma | 97.83 | |
| cd08907 | 205 | START_STARD8-like C-terminal lipid-binding START d | 97.79 | |
| KOG0774 | 334 | consensus Transcription factor PBX and related HOX | 97.75 | |
| PF05920 | 40 | Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 | 97.68 | |
| KOG0490 | 235 | consensus Transcription factor, contains HOX domai | 97.57 | |
| cd08872 | 235 | START_STARD11-like Ceramide-binding START domain o | 97.56 | |
| cd08911 | 207 | START_STARD7-like Lipid-binding START domain of ma | 97.43 | |
| KOG2252 | 558 | consensus CCAAT displacement protein and related h | 97.29 | |
| cd08871 | 222 | START_STARD10-like Lipid-binding START domain of m | 97.22 | |
| cd08873 | 235 | START_STARD14_15-like Lipid-binding START domain o | 97.07 | |
| cd08874 | 205 | START_STARD9-like C-terminal START domain of mamma | 96.99 | |
| cd08904 | 204 | START_STARD6-like Lipid-binding START domain of ma | 96.9 | |
| cd08869 | 197 | START_RhoGAP C-terminal lipid-binding START domain | 96.59 | |
| cd08914 | 236 | START_STARD15-like Lipid-binding START domain of m | 96.57 | |
| cd08907 | 205 | START_STARD8-like C-terminal lipid-binding START d | 96.53 | |
| cd08913 | 240 | START_STARD14-like Lipid-binding START domain of m | 96.38 | |
| KOG1146 | 1406 | consensus Homeobox protein [General function predi | 96.27 | |
| cd08877 | 215 | START_2 Uncharacterized subgroup of the steroidoge | 96.21 | |
| cd08868 | 208 | START_STARD1_3_like Cholesterol-binding START doma | 95.94 | |
| cd00177 | 193 | START Lipid-binding START domain of mammalian STAR | 95.8 | |
| cd08903 | 208 | START_STARD5-like Lipid-binding START domain of ma | 95.5 | |
| smart00234 | 206 | START in StAR and phosphatidylcholine transfer pro | 95.47 | |
| cd08870 | 209 | START_STARD2_7-like Lipid-binding START domain of | 95.46 | |
| cd08867 | 206 | START_STARD4_5_6-like Lipid-binding START domain o | 95.43 | |
| cd08876 | 195 | START_1 Uncharacterized subgroup of the steroidoge | 95.33 | |
| cd08906 | 209 | START_STARD3-like Cholesterol-binding START domain | 95.21 | |
| KOG0773 | 342 | consensus Transcription factor MEIS1 and related H | 94.77 | |
| cd08908 | 204 | START_STARD12-like C-terminal lipid-binding START | 94.36 | |
| cd08873 | 235 | START_STARD14_15-like Lipid-binding START domain o | 94.13 | |
| cd08875 | 229 | START_ArGLABRA2_like C-terminal lipid-binding STAR | 93.77 | |
| cd08911 | 207 | START_STARD7-like Lipid-binding START domain of ma | 93.35 | |
| PF01852 | 206 | START: START domain; InterPro: IPR002913 START (St | 92.94 | |
| cd08914 | 236 | START_STARD15-like Lipid-binding START domain of m | 92.93 | |
| cd08909 | 205 | START_STARD13-like C-terminal lipid-binding START | 92.81 | |
| PF11569 | 56 | Homez: Homeodomain leucine-zipper encoding, Homez; | 92.25 | |
| cd08910 | 207 | START_STARD2-like Lipid-binding START domain of ma | 91.99 | |
| cd08902 | 202 | START_STARD4-like Lipid-binding START domain of ma | 91.67 | |
| cd08905 | 209 | START_STARD1-like Cholesterol-binding START domain | 90.63 | |
| KOG2761 | 219 | consensus START domain-containing proteins involve | 90.3 | |
| cd08866 | 144 | SRPBCC_11 Ligand-binding SRPBCC domain of an uncha | 89.83 | |
| cd08860 | 146 | TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom | 89.48 | |
| cd05018 | 144 | CoxG Carbon monoxide dehydrogenase subunit G (CoxG | 88.94 | |
| KOG4196 | 135 | consensus bZIP transcription factor MafK [Transcri | 88.29 | |
| cd08864 | 208 | SRPBCC_DUF3074 DUF3074, an uncharacterized ligand- | 87.29 | |
| PRK09413 | 121 | IS2 repressor TnpA; Reviewed | 87.15 | |
| cd07819 | 140 | SRPBCC_2 Ligand-binding SRPBCC domain of an unchar | 86.11 | |
| cd07821 | 140 | PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), | 85.28 | |
| PRK15422 | 79 | septal ring assembly protein ZapB; Provisional | 84.19 | |
| cd07813 | 138 | COQ10p_like Coenzyme Q-binding protein COQ10p and | 83.14 | |
| KOG4005 | 292 | consensus Transcription factor XBP-1 [Transcriptio | 82.87 | |
| cd08913 | 240 | START_STARD14-like Lipid-binding START domain of m | 82.09 | |
| COG3074 | 79 | Uncharacterized protein conserved in bacteria [Fun | 82.01 | |
| PF06005 | 72 | DUF904: Protein of unknown function (DUF904); Inte | 81.73 | |
| PF10604 | 139 | Polyketide_cyc2: Polyketide cyclase / dehydrase an | 80.14 | |
| cd08861 | 142 | OtcD1_ARO-CYC_like N-terminal and C-terminal aroma | 80.02 |
| >cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-90 Score=706.70 Aligned_cols=228 Identities=52% Similarity=0.908 Sum_probs=221.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceEEcCCCCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHHHHh
Q 004271 274 KSRIMELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQSF 353 (764)
Q Consensus 274 ~~~~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~l 353 (764)
|++|++||++||+||++||++++|||++++++++|+||+|||.++||+.. +.+|.||++|||||||+|+||+.+|||+|
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~-~~~~~~~~~eASR~~glV~m~~~~lVe~l 79 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHG-GSKPGGFTTEASRACGLVMMNAIKLVEIL 79 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcC-CCCCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence 57899999999999999999999999999988899999999999999998 89999999999999999999999999999
Q ss_pred cChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecCCCcEEEEEEeccCccc
Q 004271 354 TDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEE 433 (764)
Q Consensus 354 mD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~ 433 (764)
||+++|.++||+||++|+|++||++|++|++||+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+.
T Consensus 80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~ 159 (229)
T cd08875 80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT 159 (229)
T ss_pred hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred cc-cCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 004271 434 NI-DASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCE 502 (764)
Q Consensus 434 ~~-~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~ce 502 (764)
.+ .++++||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++||||||
T Consensus 160 ~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 33 4468999999999999999999999999999999999999999999999999999999999999997
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells. |
| >PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] | Back alignment and domain information |
|---|
| >smart00234 START in StAR and phosphatidylcholine transfer protein | Back alignment and domain information |
|---|
| >KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription] | Back alignment and domain information |
|---|
| >KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG0485 consensus Transcription factor NKX-5 | Back alignment and domain information |
|---|
| >KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG2251 consensus Homeobox transcription factor [Transcription] | Back alignment and domain information |
|---|
| >KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >PF00046 Homeobox: Homeobox domain not present here | Back alignment and domain information |
|---|
| >KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class | Back alignment and domain information |
|---|
| >KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >smart00389 HOX Homeodomain | Back alignment and domain information |
|---|
| >cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner | Back alignment and domain information |
|---|
| >cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins | Back alignment and domain information |
|---|
| >COG5576 Homeodomain-containing transcription factor [Transcription] | Back alignment and domain information |
|---|
| >KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >KOG0847 consensus Transcription factor, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins | Back alignment and domain information |
|---|
| >KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins | Back alignment and domain information |
|---|
| >cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins | Back alignment and domain information |
|---|
| >KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins | Back alignment and domain information |
|---|
| >KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins | Back alignment and domain information |
|---|
| >cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
| >cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins | Back alignment and domain information |
|---|
| >cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
| >PLN00188 enhanced disease resistance protein (EDR2); Provisional | Back alignment and domain information |
|---|
| >cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins | Back alignment and domain information |
|---|
| >cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins | Back alignment and domain information |
|---|
| >KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription] | Back alignment and domain information |
|---|
| >cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
| >cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins | Back alignment and domain information |
|---|
| >cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family | Back alignment and domain information |
|---|
| >cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins | Back alignment and domain information |
|---|
| >cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family | Back alignment and domain information |
|---|
| >cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding | Back alignment and domain information |
|---|
| >cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
| >KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription] | Back alignment and domain information |
|---|
| >PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] | Back alignment and domain information |
|---|
| >KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains | Back alignment and domain information |
|---|
| >cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins | Back alignment and domain information |
|---|
| >KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription] | Back alignment and domain information |
|---|
| >cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins | Back alignment and domain information |
|---|
| >cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins | Back alignment and domain information |
|---|
| >cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding | Back alignment and domain information |
|---|
| >cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins | Back alignment and domain information |
|---|
| >cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
| >cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins | Back alignment and domain information |
|---|
| >cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
| >cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins | Back alignment and domain information |
|---|
| >KOG1146 consensus Homeobox protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family | Back alignment and domain information |
|---|
| >cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins | Back alignment and domain information |
|---|
| >cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins | Back alignment and domain information |
|---|
| >cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins | Back alignment and domain information |
|---|
| >smart00234 START in StAR and phosphatidylcholine transfer protein | Back alignment and domain information |
|---|
| >cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins | Back alignment and domain information |
|---|
| >cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins | Back alignment and domain information |
|---|
| >cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family | Back alignment and domain information |
|---|
| >cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins | Back alignment and domain information |
|---|
| >KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] | Back alignment and domain information |
|---|
| >cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
| >cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins | Back alignment and domain information |
|---|
| >cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins | Back alignment and domain information |
|---|
| >cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins | Back alignment and domain information |
|---|
| >PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] | Back alignment and domain information |
|---|
| >cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins | Back alignment and domain information |
|---|
| >cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
| >PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A | Back alignment and domain information |
|---|
| >cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins | Back alignment and domain information |
|---|
| >cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins | Back alignment and domain information |
|---|
| >cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins | Back alignment and domain information |
|---|
| >KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
| >cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains | Back alignment and domain information |
|---|
| >cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) | Back alignment and domain information |
|---|
| >KOG4196 consensus bZIP transcription factor MafK [Transcription] | Back alignment and domain information |
|---|
| >cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily | Back alignment and domain information |
|---|
| >PRK09413 IS2 repressor TnpA; Reviewed | Back alignment and domain information |
|---|
| >cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
| >cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins | Back alignment and domain information |
|---|
| >PRK15422 septal ring assembly protein ZapB; Provisional | Back alignment and domain information |
|---|
| >cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins | Back alignment and domain information |
|---|
| >KOG4005 consensus Transcription factor XBP-1 [Transcription] | Back alignment and domain information |
|---|
| >cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins | Back alignment and domain information |
|---|
| >COG3074 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation | Back alignment and domain information |
|---|
| >PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis | Back alignment and domain information |
|---|
| >cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 764 | ||||
| 1hdd_C | 61 | Crystal Structure Of An Engrailed Homeodomain-Dna C | 2e-05 | ||
| 3hdd_A | 60 | Engrailed Homeodomain Dna Complex Length = 60 | 2e-05 | ||
| 1p7j_A | 59 | Crystal Structure Of Engrailed Homeodomain Mutant K | 4e-05 | ||
| 2hdd_A | 61 | Engrailed Homeodomain Q50k Variant Dna Complex Leng | 4e-05 | ||
| 1p7i_A | 59 | Crystal Structure Of Engrailed Homeodomain Mutant K | 5e-05 | ||
| 1enh_A | 54 | Structural Studies Of The Engrailed Homeodomain Len | 5e-05 | ||
| 1du0_A | 57 | Engrailed Homeodomain Q50a Variant Dna Complex Leng | 8e-05 | ||
| 1ztr_A | 61 | Solution Structure Of Engrailed Homeodomain L16a Mu | 8e-05 | ||
| 2dmu_A | 70 | Solution Structure Of The Homeobox Domain Of Homeob | 1e-04 | ||
| 2p81_A | 44 | Engrailed Homeodomain Helix-Turn-Helix Motif Length | 1e-04 | ||
| 2hos_A | 63 | Phage-selected Homeodomain Bound To Unmodified Dna | 1e-04 | ||
| 3a02_A | 60 | Crystal Structure Of Aristaless Homeodomain Length | 3e-04 | ||
| 3lnq_A | 58 | Structure Of Aristaless Homeodomain In Complex With | 3e-04 | ||
| 2m0c_A | 75 | Solution Nmr Structure Of Homeobox Domain Of Human | 3e-04 | ||
| 3a01_B | 67 | Crystal Structure Of Aristaless And Clawless Homeod | 4e-04 | ||
| 1ftt_A | 68 | Thyroid Transcription Factor 1 Homeodomain (Rattus | 4e-04 | ||
| 2dmq_A | 80 | Solution Structure Of The Homeobox Domain Of LimHOM | 5e-04 |
| >pdb|1HDD|C Chain C, Crystal Structure Of An Engrailed Homeodomain-Dna Complex At 2.8 Angstroms Resolution: A Framework For Understanding Homeodomain-Dna Interactions Length = 61 | Back alignment and structure |
|
| >pdb|3HDD|A Chain A, Engrailed Homeodomain Dna Complex Length = 60 | Back alignment and structure |
| >pdb|1P7J|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52e Length = 59 | Back alignment and structure |
| >pdb|2HDD|A Chain A, Engrailed Homeodomain Q50k Variant Dna Complex Length = 61 | Back alignment and structure |
| >pdb|1P7I|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52a Length = 59 | Back alignment and structure |
| >pdb|1ENH|A Chain A, Structural Studies Of The Engrailed Homeodomain Length = 54 | Back alignment and structure |
| >pdb|1DU0|A Chain A, Engrailed Homeodomain Q50a Variant Dna Complex Length = 57 | Back alignment and structure |
| >pdb|1ZTR|A Chain A, Solution Structure Of Engrailed Homeodomain L16a Mutant Length = 61 | Back alignment and structure |
| >pdb|2DMU|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox Protein Goosecoid Length = 70 | Back alignment and structure |
| >pdb|2P81|A Chain A, Engrailed Homeodomain Helix-Turn-Helix Motif Length = 44 | Back alignment and structure |
| >pdb|2HOS|A Chain A, Phage-selected Homeodomain Bound To Unmodified Dna Length = 63 | Back alignment and structure |
| >pdb|3A02|A Chain A, Crystal Structure Of Aristaless Homeodomain Length = 60 | Back alignment and structure |
| >pdb|3LNQ|A Chain A, Structure Of Aristaless Homeodomain In Complex With Dna Length = 58 | Back alignment and structure |
| >pdb|2M0C|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Human Alx4, Northeast Structural Genomics Consortium (Nesg) Target Hr4490c Length = 75 | Back alignment and structure |
| >pdb|3A01|B Chain B, Crystal Structure Of Aristaless And Clawless Homeodomains Bo Length = 67 | Back alignment and structure |
| >pdb|1FTT|A Chain A, Thyroid Transcription Factor 1 Homeodomain (Rattus Norvegicus) Length = 68 | Back alignment and structure |
| >pdb|2DMQ|A Chain A, Solution Structure Of The Homeobox Domain Of LimHOMEOBOX Protein Lhx9 Length = 80 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
Score = 91.5 bits (227), Expect = 9e-23
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 110 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169
KY EQ+R +E+ F ++P P +++ +L + + R++ WF RR ++ +
Sbjct: 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67
Query: 170 RHENS 174
+
Sbjct: 68 KKSGP 72
|
| >1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Length = 61 | Back alignment and structure |
|---|
| >3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Length = 151 | Back alignment and structure |
|---|
| >2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 89 | Back alignment and structure |
|---|
| >2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 89 | Back alignment and structure |
|---|
| >2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76 | Back alignment and structure |
|---|
| >2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 | Back alignment and structure |
|---|
| >3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Length = 66 | Back alignment and structure |
|---|
| >1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 71 | Back alignment and structure |
|---|
| >2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Length = 164 | Back alignment and structure |
|---|
| >1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Length = 160 | Back alignment and structure |
|---|
| >2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
| >1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Length = 146 | Back alignment and structure |
|---|
| >2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
| >2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 | Back alignment and structure |
|---|
| >2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Length = 84 | Back alignment and structure |
|---|
| >1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Length = 81 | Back alignment and structure |
|---|
| >2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
| >3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
| >2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Length = 66 | Back alignment and structure |
|---|
| >2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Length = 73 | Back alignment and structure |
|---|
| >2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Length = 62 | Back alignment and structure |
|---|
| >3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Length = 58 | Back alignment and structure |
|---|
| >2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Length = 61 | Back alignment and structure |
|---|
| >1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Length = 77 | Back alignment and structure |
|---|
| >2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Length = 80 | Back alignment and structure |
|---|
| >2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
| >2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 69 | Back alignment and structure |
|---|
| >1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Length = 77 | Back alignment and structure |
|---|
| >1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Length = 58 | Back alignment and structure |
|---|
| >3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Length = 93 | Back alignment and structure |
|---|
| >2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 70 | Back alignment and structure |
|---|
| >2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Length = 155 | Back alignment and structure |
|---|
| >2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 70 | Back alignment and structure |
|---|
| >3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Length = 56 | Back alignment and structure |
|---|
| >1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Length = 68 | Back alignment and structure |
|---|
| >1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Length = 68 | Back alignment and structure |
|---|
| >2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Length = 73 | Back alignment and structure |
|---|
| >1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Length = 81 | Back alignment and structure |
|---|
| >2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 80 | Back alignment and structure |
|---|
| >1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Length = 68 | Back alignment and structure |
|---|
| >2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Length = 63 | Back alignment and structure |
|---|
| >2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Length = 67 | Back alignment and structure |
|---|
| >1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Length = 68 | Back alignment and structure |
|---|
| >2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 76 | Back alignment and structure |
|---|
| >2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Length = 88 | Back alignment and structure |
|---|
| >3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Length = 60 | Back alignment and structure |
|---|
| >1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Length = 60 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 | Back alignment and structure |
|---|
| >1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Length = 97 | Back alignment and structure |
|---|
| >1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Length = 87 | Back alignment and structure |
|---|
| >2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 95 | Back alignment and structure |
|---|
| >1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Length = 194 | Back alignment and structure |
|---|
| >2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Length = 221 | Back alignment and structure |
|---|
| >2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 64 | Back alignment and structure |
|---|
| >1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Length = 83 | Back alignment and structure |
|---|
| >1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 73 | Back alignment and structure |
|---|
| >1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Length = 60 | Back alignment and structure |
|---|
| >2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Length = 83 | Back alignment and structure |
|---|
| >1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A Length = 99 | Back alignment and structure |
|---|
| >2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Length = 80 | Back alignment and structure |
|---|
| >1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Length = 73 | Back alignment and structure |
|---|
| >2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Length = 89 | Back alignment and structure |
|---|
| >1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Length = 87 | Back alignment and structure |
|---|
| >1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 | Back alignment and structure |
|---|
| >1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Length = 80 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 | Back alignment and structure |
|---|
| >3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} Length = 67 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 764 | |||
| 2r55_A | 231 | STAR-related lipid transfer protein 5; alpha and b | 99.84 | |
| 2dmt_A | 80 | Homeobox protein BARH-like 1; homeobox domain, thr | 99.7 | |
| 3a01_A | 93 | Homeodomain-containing protein; homeodomain, prote | 99.69 | |
| 1fjl_A | 81 | Paired protein; DNA-binding protein, paired BOX, t | 99.69 | |
| 1nk2_P | 77 | Homeobox protein VND; homeodomain, DNA-binding pro | 99.69 | |
| 2kt0_A | 84 | Nanog, homeobox protein nanog; homeodomain, struct | 99.69 | |
| 2da3_A | 80 | Alpha-fetoprotein enhancer binding protein; homeob | 99.68 | |
| 2dmq_A | 80 | LIM/homeobox protein LHX9; homeobox domain, three | 99.67 | |
| 2cue_A | 80 | Paired box protein PAX6; homeobox domain, transcri | 99.66 | |
| 1wh5_A | 80 | ZF-HD homeobox family protein; structural genomics | 99.66 | |
| 2dms_A | 80 | Homeobox protein OTX2; homeobox domain, three heli | 99.66 | |
| 1puf_A | 77 | HOX-1.7, homeobox protein HOX-A9; homeodomian, pro | 99.66 | |
| 2cra_A | 70 | Homeobox protein HOX-B13; DNA-binding, transcripti | 99.66 | |
| 2vi6_A | 62 | Homeobox protein nanog; homeodomain, DNA-binding, | 99.65 | |
| 2dmu_A | 70 | Homeobox protein goosecoid; homeobox domain, three | 99.65 | |
| 1wh7_A | 80 | ZF-HD homeobox family protein; homeobox domain, st | 99.65 | |
| 2h1k_A | 63 | IPF-1, pancreatic and duodenal homeobox 1, homeodo | 99.65 | |
| 1zq3_P | 68 | PRD-4, homeotic bicoid protein; protein-DNA comple | 99.65 | |
| 2hdd_A | 61 | Protein (engrailed homeodomain Q50K); DNA binding, | 99.64 | |
| 2da2_A | 70 | Alpha-fetoprotein enhancer binding protein; homeob | 99.64 | |
| 1ig7_A | 58 | Homeotic protein MSX-1; helix-turn-helix, transcri | 99.64 | |
| 2e1o_A | 70 | Homeobox protein PRH; DNA binding protein, structu | 99.64 | |
| 2djn_A | 70 | Homeobox protein DLX-5; structural genomics, NPPSF | 99.64 | |
| 2da1_A | 70 | Alpha-fetoprotein enhancer binding protein; homeob | 99.63 | |
| 2l7z_A | 73 | Homeobox protein HOX-A13; gene regulation; NMR {Ho | 99.63 | |
| 1ftt_A | 68 | TTF-1 HD, thyroid transcription factor 1 homeodoma | 99.63 | |
| 1ahd_P | 68 | Antennapedia protein mutant; DNA binding protein/D | 99.63 | |
| 1yz8_P | 68 | Pituitary homeobox 2; DNA binding protein, transcr | 99.62 | |
| 1jgg_A | 60 | Segmentation protein EVEN-skipped; homeodomain, pr | 99.62 | |
| 2da4_A | 80 | Hypothetical protein DKFZP686K21156; homeobox doma | 99.62 | |
| 1bw5_A | 66 | ISL-1HD, insulin gene enhancer protein ISL-1; DNA- | 99.62 | |
| 3nar_A | 96 | ZHX1, zinc fingers and homeoboxes protein 1; corep | 99.62 | |
| 1akh_A | 61 | Protein (mating-type protein A-1); complex (TWO DN | 99.61 | |
| 1b8i_A | 81 | Ultrabithorax, protein (ultrabithorax homeotic pro | 99.61 | |
| 3rkq_A | 58 | Homeobox protein NKX-2.5; helix-turn-helix, DNA bi | 99.61 | |
| 2r5y_A | 88 | Homeotic protein sex combs reduced; homeodomain; H | 99.61 | |
| 2m0c_A | 75 | Homeobox protein aristaless-like 4; structural gen | 99.61 | |
| 1uhs_A | 72 | HOP, homeodomain only protein; structural genomics | 99.61 | |
| 2hi3_A | 73 | Homeodomain-only protein; transcription; NMR {Mus | 99.61 | |
| 3a03_A | 56 | T-cell leukemia homeobox protein 2; homeodomain, d | 99.6 | |
| 3a02_A | 60 | Homeobox protein aristaless; homeodomain, developm | 99.6 | |
| 2da5_A | 75 | Zinc fingers and homeoboxes protein 3; homeobox do | 99.6 | |
| 1b72_A | 97 | Protein (homeobox protein HOX-B1); homeodomain, DN | 99.59 | |
| 2cuf_A | 95 | FLJ21616 protein; homeobox domain, hepatocyte tran | 99.59 | |
| 2k40_A | 67 | Homeobox expressed in ES cells 1; thermostable hom | 99.59 | |
| 2ecc_A | 76 | Homeobox and leucine zipper protein homez; homeobo | 99.59 | |
| 1x2n_A | 73 | Homeobox protein pknox1; homeobox domain, structur | 99.58 | |
| 2ly9_A | 74 | Zinc fingers and homeoboxes protein 1; structural | 99.56 | |
| 2ecb_A | 89 | Zinc fingers and homeoboxes protein 1; homeobox do | 99.56 | |
| 2dn0_A | 76 | Zinc fingers and homeoboxes protein 3; triple home | 99.55 | |
| 1puf_B | 73 | PRE-B-cell leukemia transcription factor-1; homeod | 99.55 | |
| 1au7_A | 146 | Protein PIT-1, GHF-1; complex (DNA-binding protein | 99.55 | |
| 2da6_A | 102 | Hepatocyte nuclear factor 1-beta; homeobox domain, | 99.54 | |
| 2dmn_A | 83 | Homeobox protein TGIF2LX; TGFB-induced factor 2-li | 99.54 | |
| 2cqx_A | 72 | LAG1 longevity assurance homolog 5; homeodomain, D | 99.53 | |
| 1e3o_C | 160 | Octamer-binding transcription factor 1; transcript | 99.53 | |
| 1b72_B | 87 | Protein (PBX1); homeodomain, DNA, complex, DNA-bin | 99.53 | |
| 1k61_A | 60 | Mating-type protein alpha-2; protein-DNA complex, | 99.53 | |
| 2dmp_A | 89 | Zinc fingers and homeoboxes protein 2; homeobox do | 99.53 | |
| 1du6_A | 64 | PBX1, homeobox protein PBX1; homeodomain, gene reg | 99.53 | |
| 2xsd_C | 164 | POU domain, class 3, transcription factor 1; trans | 99.52 | |
| 1mnm_C | 87 | Protein (MAT alpha-2 transcriptional repressor); t | 99.52 | |
| 1lfb_A | 99 | Liver transcription factor (LFB1); transcription r | 99.51 | |
| 1le8_B | 83 | Mating-type protein alpha-2; matalpha2, isothermal | 99.51 | |
| 1wi3_A | 71 | DNA-binding protein SATB2; homeodomain, helix-turn | 99.51 | |
| 3nau_A | 66 | Zinc fingers and homeoboxes protein 2; ZHX2, corep | 99.51 | |
| 3d1n_I | 151 | POU domain, class 6, transcription factor 1; prote | 99.5 | |
| 2l9r_A | 69 | Homeobox protein NKX-3.1; structural genomics, nor | 99.5 | |
| 1x2m_A | 64 | LAG1 longevity assurance homolog 6; homeobox domai | 99.48 | |
| 3l1p_A | 155 | POU domain, class 5, transcription factor 1; POU, | 99.45 | |
| 2e19_A | 64 | Transcription factor 8; homeobox domain, structura | 99.45 | |
| 2d5v_A | 164 | Hepatocyte nuclear factor 6; transcription factor, | 99.43 | |
| 3k2a_A | 67 | Homeobox protein MEIS2; homeobox domain, DNA-bindi | 99.36 | |
| 1ic8_A | 194 | Hepatocyte nuclear factor 1-alpha; transcription r | 99.29 | |
| 1em2_A | 229 | MLN64 protein; beta barrel, lipid binding protein; | 99.28 | |
| 3p0l_A | 221 | Steroidogenic acute regulatory protein, mitochond; | 99.28 | |
| 2pso_A | 237 | STAR-related lipid transfer protein 13; alpha and | 99.28 | |
| 2h8r_A | 221 | Hepatocyte nuclear factor 1-beta; trasncription fa | 99.19 | |
| 2lk2_A | 89 | Homeobox protein TGIF1; NESG, structural genomics, | 99.13 | |
| 1mh3_A | 421 | Maltose binding-A1 homeodomain protein chimera; MA | 99.02 | |
| 2da7_A | 71 | Zinc finger homeobox protein 1B; homeobox domain, | 99.02 | |
| 1jss_A | 224 | Stard4, cholesterol-regulated start protein 4; sta | 99.0 | |
| 1ln1_A | 214 | PC-TP, phosphatidylcholine transfer protein; start | 98.96 | |
| 3fo5_A | 258 | Thioesterase, adipose associated, isoform BFIT2; o | 98.79 | |
| 3qsz_A | 189 | STAR-related lipid transfer protein; structural ge | 98.49 | |
| 2e3n_A | 255 | Lipid-transfer protein CERT; ceramide transfer, li | 98.36 | |
| 2nzz_A | 37 | Penetratin conjugated GAS (374-394) peptide; confo | 98.32 | |
| 2r55_A | 231 | STAR-related lipid transfer protein 5; alpha and b | 97.49 | |
| 3qsz_A | 189 | STAR-related lipid transfer protein; structural ge | 97.01 | |
| 1em2_A | 229 | MLN64 protein; beta barrel, lipid binding protein; | 96.92 | |
| 3p0l_A | 221 | Steroidogenic acute regulatory protein, mitochond; | 96.9 | |
| 1jss_A | 224 | Stard4, cholesterol-regulated start protein 4; sta | 96.61 | |
| 2pso_A | 237 | STAR-related lipid transfer protein 13; alpha and | 96.46 | |
| 1ln1_A | 214 | PC-TP, phosphatidylcholine transfer protein; start | 96.26 | |
| 2d4r_A | 147 | Hypothetical protein TTHA0849; start domain, struc | 95.55 | |
| 3fo5_A | 258 | Thioesterase, adipose associated, isoform BFIT2; o | 95.24 | |
| 3tfz_A | 172 | Cyclase; helix-GRIP, BET V1-like superfamily, bios | 88.95 | |
| 3tvq_A | 169 | Multifunctional cyclase-dehydratase-3-O-methyl TR | 88.21 | |
| 3tl1_A | 159 | WHIE ORF VI, polyketide cyclase; helix-GRIP fold, | 87.36 | |
| 1t17_A | 148 | Conserved hypothetical protein; beta-alpha-beta-BE | 85.1 | |
| 2jee_A | 81 | YIIU; FTSZ, septum, coiled-coil, cell division, ce | 81.2 |
| >2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-20 Score=187.84 Aligned_cols=202 Identities=11% Similarity=0.105 Sum_probs=161.0
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCCceEEcCCCCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHHHH
Q 004271 273 DKSRIMELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQS 352 (764)
Q Consensus 273 ~~~~~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~ 352 (764)
+++.++++|++||+||+++++.. ..|....+. ++.+.|.+.. .+....+.|..++|.+.+.+|++.
T Consensus 20 ~~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~~--------~gv~v~~~~~-----~~~~~~~~k~~~~v~~~~~~v~~~ 85 (231)
T 2r55_A 20 FQSMAAQMSEAVAEKMLQYRRDT-AGWKICREG--------NGVSVSWRPS-----VEFPGNLYRGEGIVYGTLEEVWDC 85 (231)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC-SSCEEEECC--------SSEEEEEEEC-----SSSSSEEEEEEEEESSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC-CCCEEEEeC--------CCEEEEEEcc-----CCCCCcEEEEEEEECCCHHHHHHH
Confidence 58999999999999999999754 789876432 2334453332 133457889999999999999999
Q ss_pred hcC-----hhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehh-hhhcccCcccCceeEEEEeeeecCCCcEEEEEE
Q 004271 353 FTD-----VNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFA-ELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDV 426 (764)
Q Consensus 353 lmD-----~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~a-el~v~SPLvp~Re~~flRyckq~~~g~w~VvDv 426 (764)
||+ +.+|-..|.. +++|+.|+.. -.++|. ....++++|++|||.++||+++.++|.|+|+..
T Consensus 86 l~~~d~~~r~~Wd~~~~~----~~vle~i~~~--------~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~ 153 (231)
T 2r55_A 86 VKPAVGGLRVKWDENVTG----FEIIQSITDT--------LCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNAT 153 (231)
T ss_dssp HCC--CCSHHHHCTTCSE----EEEEEECSSS--------EEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEE
T ss_pred HHhhCcchhhhhccccce----eEEEEEcCCC--------EEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEE
Confidence 977 8999877664 4888888631 233442 223456799999999999999999999999999
Q ss_pred eccCccccccCccccccccCCceeeeeCC--CCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHHHH
Q 004271 427 SIDKVEENIDASLAKCRKRPSGCIVEDKS--NGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCERL 504 (764)
Q Consensus 427 S~d~~~~~~~~~~~~~~~~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~cerl 504 (764)
|++.-..-+...++|++.++|||+||+++ +|.|+|||+.|++..-+ +| +.++++.+..+...|++.|+++|+.+
T Consensus 154 Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 154 HVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp ECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred eccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 99843221234689999999999999998 78999999999998765 55 68899999999999999999999863
|
| >2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B | Back alignment and structure |
|---|
| >1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A | Back alignment and structure |
|---|
| >2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A | Back alignment and structure |
|---|
| >2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} | Back alignment and structure |
|---|
| >2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} | Back alignment and structure |
|---|
| >1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A | Back alignment and structure |
|---|
| >2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* | Back alignment and structure |
|---|
| >1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A | Back alignment and structure |
|---|
| >1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P | Back alignment and structure |
|---|
| >1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* | Back alignment and structure |
|---|
| >1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* | Back alignment and structure |
|---|
| >3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* | Back alignment and structure |
|---|
| >2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} | Back alignment and structure |
|---|
| >3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A | Back alignment and structure |
|---|
| >2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* | Back alignment and structure |
|---|
| >1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 | Back alignment and structure |
|---|
| >2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A | Back alignment and structure |
|---|
| >1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P | Back alignment and structure |
|---|
| >1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} | Back alignment and structure |
|---|
| >1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A | Back alignment and structure |
|---|
| >1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* | Back alignment and structure |
|---|
| >1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A | Back alignment and structure |
|---|
| >2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A | Back alignment and structure |
|---|
| >3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 | Back alignment and structure |
|---|
| >1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 | Back alignment and structure |
|---|
| >3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 | Back alignment and structure |
|---|
| >2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A | Back alignment and structure |
|---|
| >2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 | Back alignment and structure |
|---|
| >1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* | Back alignment and structure |
|---|
| >3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} | Back alignment and structure |
|---|
| >2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* | Back alignment and structure |
|---|
| >2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A | Back alignment and structure |
|---|
| >2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} | Back alignment and structure |
|---|
| >1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 | Back alignment and structure |
|---|
| >3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 | Back alignment and structure |
|---|
| >2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 | Back alignment and structure |
|---|
| >1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* | Back alignment and structure |
|---|
| >2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 | Back alignment and structure |
|---|
| >3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} | Back alignment and structure |
|---|
| >3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A | Back alignment and structure |
|---|
| >3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A | Back alignment and structure |
|---|
| >1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6 | Back alignment and structure |
|---|
| >2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 764 | ||||
| d1pufa_ | 77 | a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus m | 9e-20 | |
| d1wh7a_ | 80 | a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Tha | 2e-18 | |
| d1k61a_ | 60 | a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast | 8e-17 | |
| d2e1oa1 | 57 | a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo | 1e-16 | |
| d9anta_ | 56 | a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila | 4e-16 | |
| d2cuea1 | 68 | a.4.1.1 (A:7-74) Paired box protein pax6 {Human (H | 6e-16 | |
| d1ftta_ | 68 | a.4.1.1 (A:) Thyroid transcription factor 1 homeod | 1e-15 | |
| d1zq3p1 | 67 | a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fl | 2e-15 | |
| d1x2ma1 | 52 | a.4.1.1 (A:8-59) Lag1 longevity assurance homolog | 3e-15 | |
| d2craa1 | 58 | a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human ( | 3e-15 | |
| d1x2na1 | 62 | a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H | 3e-15 | |
| d1s7ea1 | 50 | a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {M | 5e-15 | |
| d1bw5a_ | 66 | a.4.1.1 (A:) Insulin gene enhancer protein isl-1 { | 7e-15 | |
| d1fjla_ | 65 | a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila | 8e-15 | |
| d1vnda_ | 77 | a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophi | 1e-14 | |
| d2cqxa1 | 59 | a.4.1.1 (A:8-66) LAG1 longevity assurance homolog | 2e-14 | |
| d2ecba1 | 76 | a.4.1.1 (A:8-83) Zinc fingers and homeoboxes prote | 4e-14 | |
| d1b72a_ | 88 | a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo | 4e-14 | |
| d1p7ia_ | 53 | a.4.1.1 (A:) Engrailed Homeodomain {Drosophila mel | 4e-14 | |
| d1pufb_ | 73 | a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96 | 5e-14 | |
| d1au7a1 | 58 | a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Ra | 6e-14 | |
| d1ig7a_ | 58 | a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculu | 7e-14 | |
| d1jgga_ | 57 | a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly ( | 1e-13 | |
| d1yz8p1 | 60 | a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo | 3e-13 | |
| d1le8a_ | 53 | a.4.1.1 (A:) Mating type protein A1 Homeodomain {B | 4e-13 | |
| d1ocpa_ | 67 | a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus mus | 9e-13 | |
| d1wi3a_ | 71 | a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Hom | 2e-12 | |
| d2cufa1 | 82 | a.4.1.1 (A:8-89) Homeobox-containing protein 1, HM | 2e-11 | |
| d1uhsa_ | 72 | a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse | 2e-10 | |
| d2ecca1 | 76 | a.4.1.1 (A:1-76) Homeobox-leucine zipper protein H | 2e-10 | |
| d1e3oc1 | 57 | a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human ( | 3e-10 | |
| d1lfba_ | 78 | a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HN | 5e-09 | |
| d2jn6a1 | 89 | a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 | 1e-04 |
| >d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: Homeodomain domain: Homeobox protein hox-a9 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 81.8 bits (202), Expect = 9e-20
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 98 DGDDDSKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWF 157
+ + + + RKK +T Q E+E F + + +R ++++ L L RQVK WF
Sbjct: 2 NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWF 61
Query: 158 QNRRTQIKTIQE 169
QNRR ++K I +
Sbjct: 62 QNRRMKMKKINK 73
|
| >d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 80 | Back information, alignment and structure |
|---|
| >d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 | Back information, alignment and structure |
|---|
| >d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
| >d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56 | Back information, alignment and structure |
|---|
| >d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 | Back information, alignment and structure |
|---|
| >d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 68 | Back information, alignment and structure |
|---|
| >d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 67 | Back information, alignment and structure |
|---|
| >d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 | Back information, alignment and structure |
|---|
| >d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Length = 58 | Back information, alignment and structure |
|---|
| >d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 | Back information, alignment and structure |
|---|
| >d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 | Back information, alignment and structure |
|---|
| >d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 66 | Back information, alignment and structure |
|---|
| >d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 65 | Back information, alignment and structure |
|---|
| >d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 77 | Back information, alignment and structure |
|---|
| >d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 59 | Back information, alignment and structure |
|---|
| >d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 | Back information, alignment and structure |
|---|
| >d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
| >d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 53 | Back information, alignment and structure |
|---|
| >d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 | Back information, alignment and structure |
|---|
| >d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 58 | Back information, alignment and structure |
|---|
| >d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 58 | Back information, alignment and structure |
|---|
| >d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 57 | Back information, alignment and structure |
|---|
| >d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 | Back information, alignment and structure |
|---|
| >d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 53 | Back information, alignment and structure |
|---|
| >d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 67 | Back information, alignment and structure |
|---|
| >d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 | Back information, alignment and structure |
|---|
| >d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Length = 82 | Back information, alignment and structure |
|---|
| >d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Length = 72 | Back information, alignment and structure |
|---|
| >d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Length = 76 | Back information, alignment and structure |
|---|
| >d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
| >d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Length = 78 | Back information, alignment and structure |
|---|
| >d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]} Length = 89 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 764 | |||
| d1pufa_ | 77 | Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax | 99.72 | |
| d2craa1 | 58 | Homeobox protein hox-b13 {Human (Homo sapiens) [Ta | 99.71 | |
| d1zq3p1 | 67 | Homeotic bicoid protein {Fruit fly (Drosophila mel | 99.71 | |
| d1ig7a_ | 58 | Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 | 99.71 | |
| d2e1oa1 | 57 | Homeobox protein prh {Human (Homo sapiens) [TaxId: | 99.71 | |
| d9anta_ | 56 | Antennapedia Homeodomain {Drosophila melanogaster | 99.7 | |
| d1jgga_ | 57 | Even-skipped homeodomain {Fruit fly (Drosophila me | 99.7 | |
| d1fjla_ | 65 | Paired protein {Fruit fly (Drosophila melanogaster | 99.69 | |
| d1vnda_ | 77 | VND/NK-2 protein {Fruit fly (Drosophila melanogast | 99.69 | |
| d1ftta_ | 68 | Thyroid transcription factor 1 homeodomain {Rat (R | 99.67 | |
| d1p7ia_ | 53 | Engrailed Homeodomain {Drosophila melanogaster [Ta | 99.67 | |
| d1b72a_ | 88 | Homeobox protein hox-b1 {Human (Homo sapiens) [Tax | 99.67 | |
| d2cuea1 | 68 | Paired box protein pax6 {Human (Homo sapiens) [Tax | 99.67 | |
| d1yz8p1 | 60 | Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: | 99.65 | |
| d1uhsa_ | 72 | Homeodomain-only protein, Hop {Mouse (Mus musculus | 99.65 | |
| d1ocpa_ | 67 | Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId | 99.61 | |
| d1bw5a_ | 66 | Insulin gene enhancer protein isl-1 {Rat (Rattus n | 99.61 | |
| d1le8a_ | 53 | Mating type protein A1 Homeodomain {Baker's yeast | 99.6 | |
| d2cufa1 | 82 | Homeobox-containing protein 1, HMBOX1 (Flj21616) { | 99.6 | |
| d1au7a1 | 58 | Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta | 99.59 | |
| d1wh7a_ | 80 | ZF-HD homeobox protein At4g24660 {Thale cress (Ara | 99.57 | |
| d1wi3a_ | 71 | DNA-binding protein SATB2 {Human (Homo sapiens) [T | 99.57 | |
| d1e3oc1 | 57 | Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId | 99.55 | |
| d1s7ea1 | 50 | Hepatocyte nuclear factor 6 {Mouse (Mus musculus) | 99.5 | |
| d2ecba1 | 76 | Zinc fingers and homeoboxes protein 1, ZHX1 {Human | 99.5 | |
| d1pufb_ | 73 | pbx1 {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d2ecca1 | 76 | Homeobox-leucine zipper protein Homez {Human (Homo | 99.47 | |
| d1x2ma1 | 52 | Lag1 longevity assurance homolog 6, LASS6 {Mouse ( | 99.44 | |
| d1lfba_ | 78 | Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat | 99.42 | |
| d2cqxa1 | 59 | LAG1 longevity assurance homolog 5, LASS5 {Mouse ( | 99.39 | |
| d1k61a_ | 60 | mat alpha2 Homeodomain {Baker's yeast (Saccharomyc | 99.37 | |
| d1x2na1 | 62 | Homeobox protein pknox1 {Human (Homo sapiens) [Tax | 99.28 | |
| d1jssa_ | 199 | Cholesterol-regulated Start protein 4 (Stard4). {M | 98.93 | |
| d1em2a_ | 214 | Lipid transport domain of Mln64 {Human (Homo sapie | 98.64 | |
| d2psoa1 | 197 | Star-related lipid transfer protein 13 {Human (Hom | 98.63 | |
| d1ln1a_ | 203 | Phosphatidylcholine transfer protein {Human (Homo | 98.39 | |
| d1em2a_ | 214 | Lipid transport domain of Mln64 {Human (Homo sapie | 96.61 | |
| d1jssa_ | 199 | Cholesterol-regulated Start protein 4 (Stard4). {M | 96.21 | |
| d1ln1a_ | 203 | Phosphatidylcholine transfer protein {Human (Homo | 96.13 | |
| d2psoa1 | 197 | Star-related lipid transfer protein 13 {Human (Hom | 96.09 | |
| d2d4ra1 | 146 | Hypothetical protein TTHA0849 {Thermus thermophilu | 92.75 | |
| d2rera1 | 155 | Multifunctional enzyme TcmN, cyclase/aromatase dom | 85.87 |
| >d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: Homeodomain domain: Homeobox protein hox-a9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=1.3e-18 Score=148.34 Aligned_cols=64 Identities=36% Similarity=0.501 Sum_probs=59.3
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
+.+||.|++||++|+.+||..|+.++||+..+|++||..|||+++||++||||||+|+|+....
T Consensus 11 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~l~l~~~qV~iWFqNrR~k~kr~~~~ 74 (77)
T d1pufa_ 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHhhhhhhhhHHHHHHHHHH
Confidence 3456778999999999999999999999999999999999999999999999999999986654
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| >d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
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| >d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
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| >d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
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| >d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} | Back information, alignment and structure |
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