Citrus Sinensis ID: 004273
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 764 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SGQ6 | 773 | Pentatricopeptide repeat- | yes | no | 0.882 | 0.871 | 0.543 | 0.0 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.451 | 0.547 | 0.248 | 3e-23 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.679 | 0.823 | 0.219 | 7e-23 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.668 | 0.808 | 0.220 | 7e-22 | |
| Q9SH26 | 577 | Pentatricopeptide repeat- | no | no | 0.450 | 0.596 | 0.239 | 1e-20 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.450 | 0.546 | 0.237 | 1e-20 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.698 | 0.583 | 0.226 | 2e-20 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.341 | 0.284 | 0.281 | 2e-20 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.560 | 0.567 | 0.213 | 4e-20 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.683 | 0.476 | 0.211 | 1e-19 |
| >sp|Q9SGQ6|PP126_ARATH Pentatricopeptide repeat-containing protein At1g76280 OS=Arabidopsis thaliana GN=At1g76280 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/756 (54%), Positives = 535/756 (70%), Gaps = 82/756 (10%)
Query: 37 SRTLTTTMGLNE----ESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92
SR++TT +G NE + SK Q+QIVDAL GER AS LL L ++SL ADDF
Sbjct: 43 SRSVTTMIG-NEFIRCQDESKILQLQIVDALRSGERQGASALLFKLIQGNYSLSADDFHD 101
Query: 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
IL YCARSPDP+FVMET+ +M +KEI L+++ L ++++LC GG+L++AS I+ + E
Sbjct: 102 ILYYCARSPDPVFVMETYSVMCKKEISLDSRSLLFIVKSLCNGGHLDKASEFIHAVREDD 161
Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
I P+LP+YN FLGACA+ S+ HA+ CL+LMD R VGKN +TY LLKLAV+Q+NLS V
Sbjct: 162 RISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTV 221
Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272
++IW+ Y+ HY+L I SLR+F+WSFTRL DLKSAYE LQHMV LA+ G+ ++ +++ G+L
Sbjct: 222 NDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKL 280
Query: 273 RSSRLDIPIPLN-------------------------ALP-------VMKVLRWSFSDVI 300
S+RL IP+P ALP ++VLRWSF+DVI
Sbjct: 281 HSTRLYIPVPSKDETGSEKFAFGVTDRIVDCNSSSKVALPKGHNKILAIRVLRWSFNDVI 340
Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
HACG+++NS LAEQLMLQ LK+MQQ NLK
Sbjct: 341 HACGQSKNSELAEQLMLQ--------------------------------LKVMQQQNLK 368
Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
P DST+AT++ CSKAL++DLAE LLDQIS C+ PF+ LAA D++D+PERA+++ A+
Sbjct: 369 PYDSTLATVAAYCSKALQVDLAEHLLDQISECSYSYPFNNLLAAYDSLDQPERAVRVLAR 428
Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
M++ KLRPD+RTYELLFSLFGNVNAPYEEGNM SQVD KRINAIEMDM RN QHS IS
Sbjct: 429 MKELKLRPDMRTYELLFSLFGNVNAPYEEGNMLSQVDCCKRINAIEMDMMRNGFQHSPIS 488
Query: 480 MKNLLKALGAEGMIRELIQYF-------CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
N+L+ALGAEGM+ E+I++ S LGTPTYN VLHSL+EA E+ + IF
Sbjct: 489 RLNVLRALGAEGMVNEMIRHLQKAENLSAHSNMYLGTPTYNIVLHSLLEANETDMVINIF 548
Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
K+MK+CG P + ATYNIMIDCCS+I +KSA ALVSMM+RDGF P+ +T+TAL+KILL+
Sbjct: 549 KRMKSCGCPADVATYNIMIDCCSLIHSYKSACALVSMMIRDGFSPKAVTFTALMKILLND 608
Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
+F+EALNLLD +LE I DVL YNTIL+KA EKG IDVIE+I+EQMH+ KV PDP+TC
Sbjct: 609 ANFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKGMIDVIEYIVEQMHREKVNPDPTTC 668
Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFED-LILAEDSEAESRIL 710
H+VFS YV G+H +A+EAL VLS+RML EE +L++K+ + E+ +++ED EAE++I+
Sbjct: 669 HYVFSCYVEKGYHATAIEALNVLSLRMLNEEDKESLQDKKIELEENFVMSEDPEAETKII 728
Query: 711 QFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRA 746
+ S E+LA AALL LRWC ++G I WS D++
Sbjct: 729 ELFRKSEEHLA--AALLNLRWCAMLGGRIIWSEDQS 762
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 170/366 (46%), Gaps = 21/366 (5%)
Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
++ V++ + ++ LA L+ +M+ L+P Y+ I + + + + + + K M
Sbjct: 223 TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 282
Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
+ ++P T ++L S C+ D + L D I R NP FSA + A K
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342
Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
A K++ +M ++ + P I TY L + F M ++D AK++ M
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFC----------MHDRLDEAKQMFEF---MVS 389
Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPL--GTPTYNTVLHSLVEAQESHR 527
+ ++ L+K + E ++ F + S+ L T TYN ++ L +A +
Sbjct: 390 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 449
Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
A EIFK+M + G+PPN TYN ++D + A + + R P TY +I+
Sbjct: 450 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 509
Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
+ G ++ +L +SL+G+ DV+ YNT++ C KG + + + ++M ++ P
Sbjct: 510 GMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 569
Query: 648 DPSTCH 653
+ S C+
Sbjct: 570 N-SGCY 574
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 120/546 (21%), Positives = 232/546 (42%), Gaps = 27/546 (4%)
Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214
+P + ++ L A AK++ + M + + N TY+ L+ + LS
Sbjct: 78 FPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALA 137
Query: 215 IWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRL 272
+ +K Y I +L + F + A + MV + + N G
Sbjct: 138 VLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLF 197
Query: 273 RSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
R +R + L V+K + ++ V++ + + LA L+ +M+ ++P
Sbjct: 198 RHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVV 257
Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQ 388
Y+ I A+ + + + + + + M ++P T +L C+ D + L D
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 389 ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAP 445
I R NP FSA + A K A K++ +M ++ + PDI TY L + F
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC----- 372
Query: 446 YEEGNMFSQVDSAKRINAIEMDMARN---NIQHSHISMKNLLKALGA-EGMIRELIQYFC 501
M ++D AK + E+ ++++ N+ + +K KA EGM EL +
Sbjct: 373 -----MHDRLDEAKHM--FELMISKDCFPNVVTYNTLIKGFCKAKRVDEGM--ELFREMS 423
Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
T TY T++H +A+E A +FKQM + G+ P+ TY+I++D +
Sbjct: 424 QRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVE 483
Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
+A + + R P TY +I+ + G ++ +L +SL+G+ +V+ Y T++
Sbjct: 484 TALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 543
Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
C KG + + + +M + PD T + + ++ G ++ E ++ +
Sbjct: 544 SGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFV 603
Query: 682 EEVSTL 687
+ ST+
Sbjct: 604 GDASTI 609
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 122/554 (22%), Positives = 234/554 (42%), Gaps = 43/554 (7%)
Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214
+P + +N L A AK++ + M + + + TY+ + + LS
Sbjct: 80 FPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALA 139
Query: 215 IWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA-----------MMGKL 262
+ +K Y I +L + + + + A + MV + + G
Sbjct: 140 VLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLF 199
Query: 263 YINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
N+ SE + +D + P + ++ V++ + + LA L+ +M+
Sbjct: 200 LHNKASEA---VALVDQMVQRGCQPDL----VTYGTVVNGLCKRGDIDLALSLLKKMEKG 252
Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDL 381
++ Y+ I + + + + + + M ++P T ++L S C+ D
Sbjct: 253 KIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDA 312
Query: 382 AEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSL 438
+ L D I R NP FSA + A K A K++ +M ++ + PDI TY L +
Sbjct: 313 SRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING 372
Query: 439 FGNVNAPYEEGNMFSQVDSAKRINA--IEMDMARNNIQHSHISMKNLLKALGAE-GMIRE 495
F M ++D AK + I D N + +S + +K KA E GM E
Sbjct: 373 FC----------MHDRLDEAKHMFELMISKDCFPNVVTYSTL-IKGFCKAKRVEEGM--E 419
Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
L + T TY T++H +A++ A +FKQM + G+ PN TYNI++D
Sbjct: 420 LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLD--G 477
Query: 556 IIRCFKSASALVSM--MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
+ + K A A+V + R P TY +I+ + G ++ L +SL+G+ +
Sbjct: 478 LCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPN 537
Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
V+ YNT++ C KG + + ++++M ++ P+ T + + + G ++ E ++
Sbjct: 538 VIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIK 597
Query: 674 VLSMRMLCEEVSTL 687
+ + ST+
Sbjct: 598 EMRSCGFAGDASTI 611
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 169/364 (46%), Gaps = 20/364 (5%)
Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
++ V++ + + LA L+ +M++ ++ + Y I ++ R + + + M
Sbjct: 227 TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM 286
Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
+ ++P T ++L S C+ D + L D I R NP F+A + A K
Sbjct: 287 ENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKL 346
Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
A K++ +M ++ + PDI TY L + F M ++D AK + E+ +++
Sbjct: 347 VEAEKLYDEMIKRSIDPDIFTYSSLINGFC----------MHDRLDEAKHM--FELMISK 394
Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPL--GTPTYNTVLHSLVEAQESHR 527
+ + ++ L+ I E ++ F + S+ L T TY T++H +A++
Sbjct: 395 DCFPNV-VTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 453
Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
A +FKQM + G+ PN TYN ++D + A + + R P TY +I+
Sbjct: 454 AQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 513
Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
+ G ++ +L +SL+G+ DV++YNT++ C KG + + + +M ++ P
Sbjct: 514 GMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLP 573
Query: 648 DPST 651
D T
Sbjct: 574 DSGT 577
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 168/366 (45%), Gaps = 22/366 (6%)
Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
+++ V++ + + LA L+ +M+ ++ Y I A+ + + + + + +
Sbjct: 221 FTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE 280
Query: 354 MQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDK 410
M ++P T +L C+ D + L D I R NP FSA + A K
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 340
Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
A K++ +M ++ + PDI TY L + F M ++D AK + E+ ++
Sbjct: 341 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFC----------MHDRLDEAKHM--FELMIS 388
Query: 470 RN---NIQHSHISMKNLLKALGAE-GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
++ N+ + +K KA E GM EL + T TYNT++ L +A +
Sbjct: 389 KDCFPNVVTYNTLIKGFCKAKRVEEGM--ELFREMSQRGLVGNTVTYNTLIQGLFQAGDC 446
Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
A +IFK+M + G+PP+ TY+I++D + A + + + P TY +
Sbjct: 447 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 506
Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
I+ + G ++ +L +SL+G+ +V++Y T++ C KG + + + +M ++
Sbjct: 507 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 566
Query: 646 QPDPST 651
P+ T
Sbjct: 567 LPNSGT 572
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 135/595 (22%), Positives = 240/595 (40%), Gaps = 61/595 (10%)
Query: 93 ILNYCARSPDPLFVMETWRMMEEKE-----IGLNNKCYLLMMQALCKGGYLEEASNLIYF 147
++ C D L+V++ R M + E L CY ++ +L + G ++E +Y
Sbjct: 149 MIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQ-VYM 207
Query: 148 LGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207
+ P + YN + KL ++ AN + + + + TYT L+ +K
Sbjct: 208 EMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRK 267
Query: 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT 267
+L + +++ + R + AY L H + +A R
Sbjct: 268 DLDSAFKVFNE----------------MPLKGCRRNEVAYTHLIHGLCVA-------RRI 304
Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327
E +D+ + + +R + CG + S A L+ +M+ G++P+
Sbjct: 305 DEA------MDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSE-ALNLVKEMEETGIKPN 357
Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALELDLAEA-- 384
HTY I ++ S E+L M + L P T A ++ C + + D +
Sbjct: 358 IHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVE 417
Query: 385 LLDQISRCTNPKPFSAFLAA-CDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNV 442
L++ N + ++ + C + +A+ + KM +K+ PD+ TY L +
Sbjct: 418 LMESRKLSPNTRTYNELIKGYCKS--NVHKAMGVLNKMLERKVLPDVVTYNSL------I 469
Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
+ GN DSA R+ ++ D Q ++ SM + +L + E F D
Sbjct: 470 DGQCRSGNF----DSAYRLLSLMNDRGLVPDQWTYTSM---IDSLCKSKRVEEACDLF-D 521
Query: 503 SKTPLGT-PT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
S G P Y ++ +A + A + ++M + PN+ T+N +I
Sbjct: 522 SLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADG 581
Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
K A+ L MV+ G P T T LI LL GDFD A + + G D Y
Sbjct: 582 KLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYT 641
Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
T ++ C +GR+ E ++ +M +N V PD T + GY + G N A + L+
Sbjct: 642 TFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLK 696
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 128/277 (46%), Gaps = 16/277 (5%)
Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
FSA ++A E AI +F M++ LRP++ TY + ++A + G F QV
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAV------IDACGKGGMEFKQV- 323
Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYN 513
AK + +M RN +Q I+ +LL G+ R L + + +YN
Sbjct: 324 -AKFFD----EMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378
Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
T+L ++ + + A EI QM I PN +Y+ +ID + F A L M
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438
Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
G ++Y L+ I G +EAL++L ++ GI DV+ YN +L ++G+ D +
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEV 498
Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
+ + +M + V P+ T + GY G + AME
Sbjct: 499 KKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAME 535
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 110/516 (21%), Positives = 203/516 (39%), Gaps = 88/516 (17%)
Query: 152 YGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211
+GI P + +N + A + H + A L L+ M S + +E T+T +++ + + +L
Sbjct: 183 WGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDG 242
Query: 212 VHEIWEDYIKHY-SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270
I E ++ S S S+ V F + ++ A +Q M
Sbjct: 243 ALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM----------------- 285
Query: 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
S D P +++F+ +++ + + A ++M M G P +T
Sbjct: 286 ----SNQDGFFPD---------QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYT 332
Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
Y+ I + ++ +EVL M + P T TL K +++ A L ++
Sbjct: 333 YNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392
Query: 391 R-------CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNV 442
CT F++ + A+++F +MR K PD TY +L
Sbjct: 393 SKGILPDVCT----FNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLID----- 443
Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
S K A+ N+LK + G R +I
Sbjct: 444 ----------SLCSKGKLDEAL-----------------NMLKQMELSGCARSVI----- 471
Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
TYNT++ +A ++ A EIF +M+ G+ N+ TYN +ID R +
Sbjct: 472 --------TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVED 523
Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
A+ L+ M+ +G P TY +L+ GD +A +++ ++ G D++ Y T++
Sbjct: 524 AAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLIS 583
Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
C+ GR++V ++ + + P + V G
Sbjct: 584 GLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQG 619
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 122/577 (21%), Positives = 232/577 (40%), Gaps = 55/577 (9%)
Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
+M T+R+ N Y ++++ + G ++++ + +G YG P + N+ L
Sbjct: 112 LMTTYRLCNS-----NPSVYDILIRVYLREGMIQDSLEIFRLMG-LYGFNPSVYTCNAIL 165
Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YS 224
G+ K V L M R + + T+ L+ + + + + + K Y+
Sbjct: 166 GSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYA 225
Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-----------NRTSEGRL- 272
+I + + + + K+A E L HM + + + NR ++G L
Sbjct: 226 PTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLL 285
Query: 273 -RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
R R + P +++ +I+ +A QL+ +M S GL P+ T+
Sbjct: 286 LRDMRKRMIHPNEV---------TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTF 336
Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
+ I +S+ + +++ +M+ L P + + L K E DLA ++ R
Sbjct: 337 NALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR 396
Query: 392 ---CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYE 447
C ++ + + A+ + +M + + PDI TY L
Sbjct: 397 NGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALI----------- 445
Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
N F +V K I + R + + I L+ G ++E I+ + ++
Sbjct: 446 --NGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIY-EAMILE 502
Query: 508 GTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
G T+N ++ SL +A + A E + M + GI PN +++ +I+ A
Sbjct: 503 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKA 562
Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH--DVLLYNTIL 621
++ M + G +P TY +L+K L G EA L SL +P D ++YNT+L
Sbjct: 563 FSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLK--SLHAVPAAVDTVMYNTLL 620
Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
C+ G + + +M Q + PD T + SG
Sbjct: 621 TAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISG 657
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 764 | ||||||
| 302141664 | 804 | unnamed protein product [Vitis vinifera] | 0.968 | 0.920 | 0.631 | 0.0 | |
| 225459866 | 728 | PREDICTED: pentatricopeptide repeat-cont | 0.869 | 0.912 | 0.626 | 0.0 | |
| 298111984 | 805 | pentatricopeptide repeat-containing prot | 0.918 | 0.872 | 0.58 | 0.0 | |
| 297842383 | 800 | pentatricopeptide repeat-containing prot | 0.917 | 0.876 | 0.575 | 0.0 | |
| 255572759 | 802 | pentatricopeptide repeat-containing prot | 0.954 | 0.908 | 0.564 | 0.0 | |
| 224057555 | 705 | predicted protein [Populus trichocarpa] | 0.858 | 0.930 | 0.593 | 0.0 | |
| 334183937 | 801 | pentatricopeptide repeat-containing prot | 0.918 | 0.876 | 0.564 | 0.0 | |
| 449503243 | 806 | PREDICTED: pentatricopeptide repeat-cont | 0.951 | 0.901 | 0.558 | 0.0 | |
| 6573717 | 800 | T23E18.21 [Arabidopsis thaliana] | 0.905 | 0.865 | 0.543 | 0.0 | |
| 449443982 | 834 | PREDICTED: pentatricopeptide repeat-cont | 0.963 | 0.882 | 0.536 | 0.0 |
| >gi|302141664|emb|CBI18867.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1003 bits (2594), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/785 (63%), Positives = 610/785 (77%), Gaps = 45/785 (5%)
Query: 1 MYRPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTT-----MGLNEESISKAT 55
M+R + R + I+DS SK ++++N+ KLE RT TT+ G +SI++
Sbjct: 1 MHRYVSRVPLRSISDSLYLSKSSVYDQKNLVRKLESLRTFTTSRDHDCFGYGRKSITRLL 60
Query: 56 QMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEE 115
Q+QIVDAL ERSRAS LL LG ++SL ADDF +IL +C++SPDPLFVME WR+M+E
Sbjct: 61 QVQIVDALRSNERSRASSLLSELGRGNYSLRADDFIYILEHCSKSPDPLFVMEIWRIMDE 120
Query: 116 KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175
KE+ +NN+CY+L +QALCKGGYLEEA NL+ F+GE + I+PILP+YN+FL C + S++
Sbjct: 121 KEVHVNNRCYMLSIQALCKGGYLEEAFNLLNFVGENHDIHPILPMYNNFLRGCVQTRSLL 180
Query: 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW 235
HAN CLDLM+ +++GKNEVTY++ LKLAV Q+NLSA H+IW++Y+ +YS+SI SLRKF+W
Sbjct: 181 HANQCLDLMEHQVLGKNEVTYSQFLKLAVLQQNLSAAHKIWKEYMTYYSMSIISLRKFIW 240
Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN----------- 284
SFTRLRDL+SAY LQHMV L G ++IN+++EGRL SSRLDIPIP N
Sbjct: 241 SFTRLRDLESAYAALQHMVDLVFKGSIFINKSAEGRLCSSRLDIPIPKNGDMGLKRCMEE 300
Query: 285 -------------------ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
++PVMKVLRWSFSDVI+AC +TQN GLAEQL+LQMQ+LGL+
Sbjct: 301 NEHSLPSVSDNSKKIDSHASMPVMKVLRWSFSDVIYACAQTQNCGLAEQLILQMQNLGLE 360
Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
PS HTYDG I+AIVSDRG +GMEVLK MQ NLKP DST+A LS+ SKAL+LDLAE+L
Sbjct: 361 PSCHTYDGLIKAIVSDRGFSDGMEVLKTMQLRNLKPYDSTLAALSIGSSKALQLDLAESL 420
Query: 386 LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNA 444
LDQISR + PF+AFLAACDT+D+PERA+ I +KM+Q KL+P++ TYELLFSLFGNVNA
Sbjct: 421 LDQISRISYVHPFNAFLAACDTLDQPERAVPILSKMKQLKLQPNVGTYELLFSLFGNVNA 480
Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY----- 499
PYEEGNM SQVD A+RI AIEMDM N IQHSH+SMKNLLKALGAEGMIREL+QY
Sbjct: 481 PYEEGNMLSQVDVARRIKAIEMDMMNNGIQHSHLSMKNLLKALGAEGMIRELMQYLHVAE 540
Query: 500 --FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
F + T LGTP YNTVLHSLVEA+ESH A+EIFK M + +P +AATYNIMIDCCS I
Sbjct: 541 NQFFRTNTYLGTPIYNTVLHSLVEAKESHIAIEIFKNMISRSLPRDAATYNIMIDCCSTI 600
Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
+C+KSA ALVSMM+RDGF P T+TYTALIKILL+ DFDEALNLLD LE IP DVLLY
Sbjct: 601 KCYKSACALVSMMMRDGFLPWTLTYTALIKILLEREDFDEALNLLDQARLEEIPSDVLLY 660
Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
NTIL+KAC KGRID+IE + EQMHQ K+QPDPSTC++VFS YV+ GF ++A+E+LQVLSM
Sbjct: 661 NTILQKACLKGRIDLIELVAEQMHQEKIQPDPSTCYYVFSSYVDGGFFSTALESLQVLSM 720
Query: 678 RMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGF 737
RM+ E+ STLEEKR++ ED I +ED +AES+ILQF + S+ENLA ALL LRWC I G
Sbjct: 721 RMISEDNSTLEEKRTELEDFIHSEDKDAESQILQFFKGSDENLAI--ALLNLRWCAISGS 778
Query: 738 PISWS 742
PISW+
Sbjct: 779 PISWT 783
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459866|ref|XP_002284840.1| PREDICTED: pentatricopeptide repeat-containing protein At1g76280-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/728 (62%), Positives = 556/728 (76%), Gaps = 64/728 (8%)
Query: 45 GLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPL 104
G +SI++ Q+QIVDAL ERSRAS LL LG ++SL ADDF +IL +C++SPDPL
Sbjct: 14 GYGRKSITRLLQVQIVDALRSNERSRASSLLSELGRGNYSLRADDFIYILEHCSKSPDPL 73
Query: 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
FVME WR+M+EKE+ +NN+CY+L +QALCKGGYLEEA NL+ F+GE + I+PILP+YN+F
Sbjct: 74 FVMEIWRIMDEKEVHVNNRCYMLSIQALCKGGYLEEAFNLLNFVGENHDIHPILPMYNNF 133
Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS 224
L C + S++HAN CLDLM+ +++GKNEVTY++ LKLAV Q+NLSA H+IW++Y+ +YS
Sbjct: 134 LRGCVQTRSLLHANQCLDLMEHQVLGKNEVTYSQFLKLAVLQQNLSAAHKIWKEYMTYYS 193
Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284
+SI SLRKF+WSFTRLRDL+SAY LQHMV L G ++IN+++EGRL SSRLDIPIP N
Sbjct: 194 MSIISLRKFIWSFTRLRDLESAYAALQHMVDLVFKGSIFINKSAEGRLCSSRLDIPIPKN 253
Query: 285 ----------------------ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
++PVMKVLRWSFSDVI+AC +TQN GLAEQL+LQ
Sbjct: 254 GDMGLKRCMEENEHSLPSVSDNSMPVMKVLRWSFSDVIYACAQTQNCGLAEQLILQ---- 309
Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
LK MQ NLKP DST+A LS+ SKAL+LDLA
Sbjct: 310 ----------------------------LKTMQLRNLKPYDSTLAALSIGSSKALQLDLA 341
Query: 383 EALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGN 441
E+LLDQISR + PF+AFLAACDT+D+PERA+ I +KM+Q KL+P++ TYELLFSLFGN
Sbjct: 342 ESLLDQISRISYVHPFNAFLAACDTLDQPERAVPILSKMKQLKLQPNVGTYELLFSLFGN 401
Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY-- 499
VNAPYEEGNM SQVD A+RI AIEMDM N IQHSH+SMKNLLKALGAEGMIREL+QY
Sbjct: 402 VNAPYEEGNMLSQVDVARRIKAIEMDMMNNGIQHSHLSMKNLLKALGAEGMIRELMQYLH 461
Query: 500 -----FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
F + T LGTP YNTVLHSLVEA+ESH A+EIFK M + +P +AATYNIMIDCC
Sbjct: 462 VAENQFFRTNTYLGTPIYNTVLHSLVEAKESHIAIEIFKNMISRSLPRDAATYNIMIDCC 521
Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
S I+C+KSA ALVSMM+RDGF P T+TYTALIKILL+ DFDEALNLLD LE IP DV
Sbjct: 522 STIKCYKSACALVSMMMRDGFLPWTLTYTALIKILLEREDFDEALNLLDQARLEEIPSDV 581
Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
LLYNTIL+KAC KGRID+IE + EQMHQ K+QPDPSTC++VFS YV+ GF ++A+E+LQV
Sbjct: 582 LLYNTILQKACLKGRIDLIELVAEQMHQEKIQPDPSTCYYVFSSYVDGGFFSTALESLQV 641
Query: 675 LSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTI 734
LSMRM+ E+ STLEEKR++ ED I +ED +AES+ILQF + S+ENLA ALL LRWC I
Sbjct: 642 LSMRMISEDNSTLEEKRTELEDFIHSEDKDAESQILQFFKGSDENLAI--ALLNLRWCAI 699
Query: 735 VGFPISWS 742
G PISW+
Sbjct: 700 SGSPISWT 707
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298111984|gb|ADI58371.1| pentatricopeptide repeat-containing protein [Capsicum annuum] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/750 (58%), Positives = 544/750 (72%), Gaps = 48/750 (6%)
Query: 38 RTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYC 97
R+ T+++G E +S++ Q +IVDAL GE+SRA LL ++ L A+DF IL C
Sbjct: 38 RSFTSSIGHVGEPVSRSGQKKIVDALVSGEKSRAVRLLYEFSLGNNKLSANDFASILQSC 97
Query: 98 ARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI 157
AR PDPLFVME WR+MEEKEI +++KCY L ++ALCKGGYL+EA +L+ +GE Y +
Sbjct: 98 ARLPDPLFVMEIWRIMEEKEINISDKCYSLAVRALCKGGYLKEALSLMNIMGENLNCYSM 157
Query: 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217
LP+YN+FL AC + S+ +A+ C+DLM+ +MVGKNE+TY +LLKLAV Q+NLSAVHEIW+
Sbjct: 158 LPIYNNFLAACYETQSVDYASKCMDLMEHQMVGKNEITYAQLLKLAVLQQNLSAVHEIWK 217
Query: 218 DYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277
+ IK YSLSI SLRKF+WSFT L DL+SAY LQHMV LA I+RT+EGR RL
Sbjct: 218 ECIKFYSLSIISLRKFIWSFTELGDLESAYTALQHMVRLAFR-DCDISRTAEGRFCDVRL 276
Query: 278 DIPIPLN-------------------------------------ALPVMKVLRWSFSDVI 300
DIP P + VMK+LRWSF+DV+
Sbjct: 277 DIPAPSTGSWSFIDVSLDIEGSSNFDIESQSLGNMEISTVRKKLSASVMKLLRWSFNDVM 336
Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
HAC + QN LAEQL+LQMQ+LGLQPS TYDGFIRAI + RG G+EVLK+M++ N+K
Sbjct: 337 HACAKVQNCDLAEQLILQMQTLGLQPSGSTYDGFIRAIATTRGFSEGVEVLKVMREENIK 396
Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
P+DST+A L++ CS+ LELDLAE+ LD+I +P P +AFL ACD +D+PERA++IFAK
Sbjct: 397 PRDSTLAVLAIICSRELELDLAESFLDEIYEIRSPHPCNAFLEACDVLDRPERAVQIFAK 456
Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
M++ L+P+IRTYELLFSLFGNVNAPYEEGNM SQVD AKRINAIEMDM N +QHSH+S
Sbjct: 457 MKKLNLQPNIRTYELLFSLFGNVNAPYEEGNMLSQVDVAKRINAIEMDMMINGLQHSHLS 516
Query: 480 MKNLLKALGAEGMIRELIQY-------FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
+KN LKALG EGMI+ELIQY F T + TP YNTVLHSLVEA+ES A ++F
Sbjct: 517 LKNELKALGTEGMIKELIQYLHAAENRFSRYDTYMITPVYNTVLHSLVEAKESQMATKMF 576
Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
K M + G+PP+AATYNIMIDCCSII CF+SA AL+SMM R+GF P+ +T T L+KILL
Sbjct: 577 KSMVSSGVPPDAATYNIMIDCCSIIGCFRSALALISMMFRNGFNPEAVTLTGLLKILLRS 636
Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
DFD L LL+ EGI DVLLY+T+L+ A EKGRIDVIE I+EQMH V PDPSTC
Sbjct: 637 EDFDGTLKLLNQGISEGIQLDVLLYDTVLQVASEKGRIDVIELIVEQMHLQGVLPDPSTC 696
Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQF 712
VF+ YV+ GF+N+AMEALQVLS+RM+ +EK+++ E+LIL EDSE ESRIL+
Sbjct: 697 SHVFAAYVDHGFYNTAMEALQVLSVRMIAGGFKDNDEKQTELENLILGEDSEDESRILKP 756
Query: 713 CEDSNENLAFTAALLQLRWCTIVGFPISWS 742
+DS E L T ALLQLRWC I+G+P+SWS
Sbjct: 757 FKDSKEYL--TVALLQLRWCAILGYPVSWS 784
|
Source: Capsicum annuum Species: Capsicum annuum Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842383|ref|XP_002889073.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297334914|gb|EFH65332.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/756 (57%), Positives = 555/756 (73%), Gaps = 55/756 (7%)
Query: 37 SRTLTTTMGLNE----ESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92
SR++TT +G NE + SK Q+QIVDAL GER AS LL ++SL A DF
Sbjct: 43 SRSVTTLIG-NEFIRCQDESKILQVQIVDALRSGERPGASALLFQFIQGNYSLSAHDFHD 101
Query: 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
IL+YCARSPDP+FVMET+ +M +KEI L+++ L ++Q+LC GG+L++AS I+ +GE
Sbjct: 102 ILHYCARSPDPVFVMETYSVMCKKEISLDSRSLLFIVQSLCNGGHLDKASEFIHAVGEDD 161
Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
I PILPVYN FLGACAK S+ HA+ CL+LMD R VGKNE+TY LLK +NLSAV
Sbjct: 162 SISPILPVYNYFLGACAKTRSVYHASKCLELMDQRRVGKNEITYAALLK-----RNLSAV 216
Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272
++IW+ Y+ HYSL I LRKF+WSFTRL DLKSAYE LQHMV LA G+L++ +++ G+L
Sbjct: 217 NDIWKHYVNHYSLDILPLRKFIWSFTRLGDLKSAYELLQHMVDLASRGELFV-KSNRGKL 275
Query: 273 RSSRLDIPIPL--------------------------------NALPVMKVLRWSFSDVI 300
S+ LDIP+P N +P +VLRWSF+DVI
Sbjct: 276 HSTTLDIPVPAKGETGSEKVAFGVNDHNVEYNSSSKVALPKGHNKIPATRVLRWSFNDVI 335
Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
HACG+++NS LAEQLMLQMQ++GL PSSHTYDGFIRA+ G GM +LK+MQQ NLK
Sbjct: 336 HACGQSKNSELAEQLMLQMQNIGLLPSSHTYDGFIRAVAFPGGYEYGMTLLKVMQQQNLK 395
Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
P DST+AT+S CSKA ++DLAE LLDQIS C+ PF+ LAA D++D+PERA+++ A+
Sbjct: 396 PYDSTLATVSAYCSKAFQVDLAEHLLDQISECSYAYPFNNLLAAYDSLDQPERAVRVLAR 455
Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
M+Q KLRPD+RTYELLFSLFGNVNAPYEEGNM SQVD KRINAIEMDM RN QHS IS
Sbjct: 456 MKQLKLRPDMRTYELLFSLFGNVNAPYEEGNMLSQVDCCKRINAIEMDMVRNGFQHSPIS 515
Query: 480 MKNLLKALGAEGMIRELIQYF-------CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
+N+L+ALGAEGM+ E+I++ S LGTPTYN VLHSL+EA E+ + IF
Sbjct: 516 RRNVLRALGAEGMVNEMIRHLQKAENLNVHSNMYLGTPTYNIVLHSLLEANETDMVINIF 575
Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
K+MK+CG P + ATYNIMIDCCSII +KSA ALVSMM+RDGF P+ +T+TAL+KILL+
Sbjct: 576 KRMKSCGCPADVATYNIMIDCCSIIHSYKSACALVSMMIRDGFSPKAVTFTALMKILLND 635
Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
G+F+EALNLLD +LE I DVL YNTIL+KA EKG IDVIE+I+EQMH+ KV PDP+TC
Sbjct: 636 GNFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKGMIDVIEYIVEQMHREKVNPDPTTC 695
Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFED-LILAEDSEAESRIL 710
H+VF+ YV G+H +A+EAL VLS+RML EE +L+EK+ + E+ +++ED EAE++I+
Sbjct: 696 HYVFTCYVEKGYHATAIEALNVLSLRMLNEEDKESLQEKKIELEENFVMSEDPEAETKII 755
Query: 711 QFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRA 746
+ +S E+LA AALL LRWC ++G I WS D++
Sbjct: 756 ELFRNSEEHLA--AALLNLRWCAMLGARIIWSEDQS 789
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572759|ref|XP_002527312.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223533312|gb|EEF35064.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/827 (56%), Positives = 569/827 (68%), Gaps = 98/827 (11%)
Query: 1 MYRPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTT-----MGLNEESISKAT 55
M RP R IADSF +S K+ +RNVA R++ T+ +G EES K+
Sbjct: 1 MQRPPGRVPLWSIADSFLRSNSIKYGQRNVAGDAGFCRSIATSTGDIILGYGEESTVKSI 60
Query: 56 QMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEE 115
Q QI+DAL GER RAS++L +LGHA++ L +DF IL YCARSPDPLF METWR+MEE
Sbjct: 61 QKQILDALNLGERGRASNMLSDLGHANNLLRPNDFVDILRYCARSPDPLFAMETWRIMEE 120
Query: 116 KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175
KEIG NN LLM++ALCKGGYLEEA NLI F+GE++G+ P L VYNSFLGAC+K+ +++
Sbjct: 121 KEIGFNNISCLLMVRALCKGGYLEEAYNLINFIGEKHGMNPSLAVYNSFLGACSKMRNLI 180
Query: 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW 235
AN CLDLM RM GKNE+TY +LLKLAVWQ+NLSAVHEI +DY K YS SI SL+ F+
Sbjct: 181 LANKCLDLMAHRMSGKNEITYMQLLKLAVWQQNLSAVHEILKDYTKLYSPSILSLQNFIE 240
Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN----------- 284
SFTRL DL SAYETLQHMV+LA+ G I T EG L SSRLDIPIP N
Sbjct: 241 SFTRLGDLNSAYETLQHMVSLALRGNTSIGSTVEGWLYSSRLDIPIPSNVELGLQRFGLK 300
Query: 285 ---------------------------------------ALPVMKVLRWSFSDVIHACGR 305
+L MKVL+ SF DVIHAC +
Sbjct: 301 EKNQQFVPLKADDATNSIEQSMISNLGKEAERAGVDETRSLATMKVLKSSFGDVIHACSQ 360
Query: 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
T+N+ LAEQLMLQ LKIMQQ +LKP +ST
Sbjct: 361 TRNARLAEQLMLQ--------------------------------LKIMQQRDLKPYNST 388
Query: 366 IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-K 424
+ATLSV CSK LELDLAEALLDQ+S +P PF+AFL AC+ D+PERAI+I+AKM+Q
Sbjct: 389 LATLSVVCSKNLELDLAEALLDQLSNYQDPYPFNAFLRACNVTDRPERAIRIWAKMKQLY 448
Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
++PDIRTYELLFSLFGNVNAPYE G MFSQVD AKRINAIEMDM +N ++H+H+SMKNLL
Sbjct: 449 VQPDIRTYELLFSLFGNVNAPYEYGTMFSQVDCAKRINAIEMDMVKNGVRHNHLSMKNLL 508
Query: 485 KALGAEGMIRELIQY-------FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
KALGAEGMIRELI Y FC + GTP NTVLHSLVEA ES+ A+++FK MK+
Sbjct: 509 KALGAEGMIRELIHYLHKEEDLFCHNNIYFGTPICNTVLHSLVEAGESYLALQMFKNMKS 568
Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
G NAATY +MID CS I+C+K+A ALVSMM+RDGFYPQT TYTALIK+L++ G+F+
Sbjct: 569 SGFRLNAATYTMMIDWCSSIQCYKTACALVSMMLRDGFYPQTETYTALIKVLMEDGNFEA 628
Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
ALNLLD S EGI DVLLYNTI++KA + RIDVIE I+EQMH+ ++PD TC++VFS
Sbjct: 629 ALNLLDQGSSEGIQPDVLLYNTIIRKAMLERRIDVIELIVEQMHRENIKPDSVTCNYVFS 688
Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDF-EDLILAEDSEAESRILQFCEDS 716
YV CGFHN+AMEALQVLS+ M+ EE +L++KR++ ED I +ED EAESRIL++
Sbjct: 689 TYVECGFHNTAMEALQVLSLWMIEEEEDSLQQKRAELEEDFIYSEDQEAESRILEYFVGC 748
Query: 717 NENLAFTAALLQLRWCTIVGFPISWSLDRASGLEDSQTNSNSRKQEI 763
EN+A +LL LRWC I+G+PISWS + TN +RK+E+
Sbjct: 749 RENIA--VSLLNLRWCAILGYPISWSPNETLWARRLSTNYCTRKEEL 793
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224057555|ref|XP_002299265.1| predicted protein [Populus trichocarpa] gi|222846523|gb|EEE84070.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/730 (59%), Positives = 527/730 (72%), Gaps = 74/730 (10%)
Query: 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
QIV AL GERSRAS LLL LG SL +F IL YCARSPDPL V+ETW++MEEKE
Sbjct: 1 QIVSALHMGERSRASALLLELGQEKMSLKPHNFVPILQYCARSPDPLLVLETWQIMEEKE 60
Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
+GL++KCYLLM++ALCKGGYLEEASN+I F+GE +GIYP LPVYN+FLGAC+ + +A
Sbjct: 61 VGLDSKCYLLMIRALCKGGYLEEASNMIDFIGESHGIYPTLPVYNTFLGACSDMSRADYA 120
Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
+ CL LM+ RM+GK+EVTY LLKLAV Q+NLSAV+EIWEDYIKH+S SI +L+KF+WSF
Sbjct: 121 DQCLQLMERRMMGKDEVTYIMLLKLAVSQQNLSAVYEIWEDYIKHFSPSILTLQKFIWSF 180
Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI---------------- 281
TRLRDLKSAYE LQHMV LA+ G ++ +S G+L SR+++PI
Sbjct: 181 TRLRDLKSAYEKLQHMVVLAIRGNTFVQTSSRGQLYPSRVNVPIHPNCELGLQKFDLKDN 240
Query: 282 ----PLNA------------LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
PL+A +P ++LRWSF+DVIHAC + + GLA+QLMLQ
Sbjct: 241 EQSVPLSANASAFGLDKRKIMPFSRILRWSFNDVIHACAQAKKPGLAKQLMLQ------- 293
Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
LK MQQ NLKP D T+AT+SV CSKALELDLAE L
Sbjct: 294 -------------------------LKTMQQKNLKPCDPTLATISVACSKALELDLAEVL 328
Query: 386 LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNA 444
LDQI+ C P P+++FL ACD MD+PERA+++ AKM++ K++PDIRTY+ LFSL GN NA
Sbjct: 329 LDQITNCPYPYPYNSFLEACDAMDQPERAVRMLAKMKKLKIQPDIRTYQQLFSLVGNTNA 388
Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY----- 499
PYE+G+M S+VDSAKRI AIE DMA+N +QHS SMKNLLKALG EGM+REL+QY
Sbjct: 389 PYEDGDMLSRVDSAKRIKAIEKDMAKNGVQHSRESMKNLLKALGKEGMMRELMQYLGVAE 448
Query: 500 --FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
F S T LG P YNTVLHSLVEA+E A+ +FK MK G PNAATY IMIDCC I
Sbjct: 449 DLFYHSNTHLGIPIYNTVLHSLVEAEECRMAIALFKHMKASGFEPNAATYCIMIDCCRTI 508
Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
RC+KSA ALVSMM+R GFY QT+ YTALIKILL +FDEALNLLD E I DVLLY
Sbjct: 509 RCYKSACALVSMMLRSGFYLQTVGYTALIKILLQDENFDEALNLLDQGHSEEIKLDVLLY 568
Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
N +L A +KGRID+IE I+EQMH+ K+QPD +TC+ VF+ YV CGFHN AMEALQVLSM
Sbjct: 569 NPVLHVAKDKGRIDIIELIVEQMHREKIQPDTTTCNNVFTAYVYCGFHNMAMEALQVLSM 628
Query: 678 RMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGF 737
RM+ +E LEEK+++ EDLIL+ED EAESRIL+ +D EN+A ALL LR C I+GF
Sbjct: 629 RMISQEDCVLEEKKAELEDLILSEDKEAESRILEHFKDFEENIA--VALLNLRNCAILGF 686
Query: 738 PISWSLDRAS 747
PISWS ++++
Sbjct: 687 PISWSPNKSA 696
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183937|ref|NP_001185409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332197699|gb|AEE35820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/756 (56%), Positives = 554/756 (73%), Gaps = 54/756 (7%)
Query: 37 SRTLTTTMGLNE----ESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92
SR++TT +G NE + SK Q+QIVDAL GER AS LL L ++SL ADDF
Sbjct: 43 SRSVTTMIG-NEFIRCQDESKILQLQIVDALRSGERQGASALLFKLIQGNYSLSADDFHD 101
Query: 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
IL YCARSPDP+ T+ +M +KEI L+++ L ++++LC GG+L++AS I+ + E
Sbjct: 102 ILYYCARSPDPV----TYSVMCKKEISLDSRSLLFIVKSLCNGGHLDKASEFIHAVREDD 157
Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
I P+LP+YN FLGACA+ S+ HA+ CL+LMD R VGKN +TY LLKLAV+Q+NLS V
Sbjct: 158 RISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTV 217
Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272
++IW+ Y+ HY+L I SLR+F+WSFTRL DLKSAYE LQHMV LA+ G+ ++ +++ G+L
Sbjct: 218 NDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKL 276
Query: 273 RSSRLDIPIPLN-------------------------ALP-------VMKVLRWSFSDVI 300
S+RL IP+P ALP ++VLRWSF+DVI
Sbjct: 277 HSTRLYIPVPSKDETGSEKFAFGVTDRIVDCNSSSKVALPKGHNKILAIRVLRWSFNDVI 336
Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
HACG+++NS LAEQLMLQMQ+LGL PSSHTYDGFIRA+ G GM +LK+MQQ NLK
Sbjct: 337 HACGQSKNSELAEQLMLQMQNLGLLPSSHTYDGFIRAVAFPEGYEYGMTLLKVMQQQNLK 396
Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
P DST+AT++ CSKAL++DLAE LLDQIS C+ PF+ LAA D++D+PERA+++ A+
Sbjct: 397 PYDSTLATVAAYCSKALQVDLAEHLLDQISECSYSYPFNNLLAAYDSLDQPERAVRVLAR 456
Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
M++ KLRPD+RTYELLFSLFGNVNAPYEEGNM SQVD KRINAIEMDM RN QHS IS
Sbjct: 457 MKELKLRPDMRTYELLFSLFGNVNAPYEEGNMLSQVDCCKRINAIEMDMMRNGFQHSPIS 516
Query: 480 MKNLLKALGAEGMIRELIQYF-------CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
N+L+ALGAEGM+ E+I++ S LGTPTYN VLHSL+EA E+ + IF
Sbjct: 517 RLNVLRALGAEGMVNEMIRHLQKAENLSAHSNMYLGTPTYNIVLHSLLEANETDMVINIF 576
Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
K+MK+CG P + ATYNIMIDCCS+I +KSA ALVSMM+RDGF P+ +T+TAL+KILL+
Sbjct: 577 KRMKSCGCPADVATYNIMIDCCSLIHSYKSACALVSMMIRDGFSPKAVTFTALMKILLND 636
Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
+F+EALNLLD +LE I DVL YNTIL+KA EKG IDVIE+I+EQMH+ KV PDP+TC
Sbjct: 637 ANFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKGMIDVIEYIVEQMHREKVNPDPTTC 696
Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFED-LILAEDSEAESRIL 710
H+VFS YV G+H +A+EAL VLS+RML EE +L++K+ + E+ +++ED EAE++I+
Sbjct: 697 HYVFSCYVEKGYHATAIEALNVLSLRMLNEEDKESLQDKKIELEENFVMSEDPEAETKII 756
Query: 711 QFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRA 746
+ S E+LA AALL LRWC ++G I WS D++
Sbjct: 757 ELFRKSEEHLA--AALLNLRWCAMLGGRIIWSEDQS 790
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503243|ref|XP_004161905.1| PREDICTED: pentatricopeptide repeat-containing protein At1g76280-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/788 (55%), Positives = 561/788 (71%), Gaps = 61/788 (7%)
Query: 5 LLRTRFQL--IADSFCKSKFHKHERRNVANKLELSRTLTTTMGL----NEESISKATQMQ 58
LR F+L IADS + K H+H R+ A+KL R L + G N + QMQ
Sbjct: 16 FLRASFRLGSIADSIYRFKPHEHVRKQDASKLVFHRALLISSGSEIWGNGAESTAFMQMQ 75
Query: 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI 118
IV+AL G+RSRAS+LL+ LG SL AD+F IL+YCA+SPDPLFVMETW++MEE+ I
Sbjct: 76 IVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGI 135
Query: 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178
LNN C LLM++ALCKGGYL+EA LI FL E + ++P LP YN FL ACA SMVHA+
Sbjct: 136 FLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHAS 195
Query: 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238
CLDLMD +MVGKNE TY+ELLKLAV QKNLS+VHEIW D++K+YS S+ SLRKF+WS+
Sbjct: 196 QCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSYA 255
Query: 239 RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA------------- 285
R+ D+KSAY LQ MV L N + GR S LDIPIP
Sbjct: 256 RMGDVKSAYTALQKMVTL--------NNGAAGRKLQS-LDIPIPSRTELYRGISVSGIKC 306
Query: 286 ---------LP-------VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
+P V KVLRWS +DV+ AC N GLAEQLM QM LGLQPSSH
Sbjct: 307 GEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGLAEQLMQQMHKLGLQPSSH 366
Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
T+DGF+R++VS+RG GME+LK+MQQ L+P DST+A +SV CSKALELDLAEALL+++
Sbjct: 367 TFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTLAAVSVSCSKALELDLAEALLERL 426
Query: 390 SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEE 448
S C P PF+AF +ACD MD+PERA+++ KM+Q K+ PD+RTYELL+SLFGNVNAPYEE
Sbjct: 427 SACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMKVAPDVRTYELLYSLFGNVNAPYEE 486
Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY-------FC 501
G+ SQVD+AKR+ IEMDM ++ IQ+SH SM NLLKALG EGM +E++QY F
Sbjct: 487 GDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLLKALGTEGMKKEVLQYLNLAENLFY 546
Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
+ T LG P YNTVLH LV+++E+H A+E+F MK G P+AAT+ +M+DCCS+I C K
Sbjct: 547 YNNTSLGMPVYNTVLHFLVDSKETHMAIELFNNMKRSGFFPDAATFEMMLDCCSVIGCLK 606
Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
SA AL+S+M+R GF PQ +TYT+L+KI+L + FD+ALNLLD S EGI DV++ NTI+
Sbjct: 607 SAFALLSLMIRSGFCPQILTYTSLVKIVLGFERFDDALNLLDQASSEGIELDVIIMNTIM 666
Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM-L 680
+KACEK RIDVIEF++E+M++ K+ PDPSTC VFS YVN G+H++AMEALQVLSMRM L
Sbjct: 667 RKACEKARIDVIEFLVEKMNREKIPPDPSTCQNVFSTYVNLGYHSTAMEALQVLSMRMLL 726
Query: 681 CEE--VSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGFP 738
CEE S E E+ +LAED+ A+SRI +F + S E L+F AL LRWC ++G+P
Sbjct: 727 CEEDDASVTEY----MENFVLAEDTGADSRIAEFFKCSREYLSF--ALFNLRWCAMLGYP 780
Query: 739 ISWSLDRA 746
+ ++ +++
Sbjct: 781 VCYAPNQS 788
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6573717|gb|AAF17637.1|AC009978_13 T23E18.21 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/780 (54%), Positives = 547/780 (70%), Gaps = 88/780 (11%)
Query: 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWR 111
SK Q+QIVDAL GER AS LL L ++SL ADDF IL YCARSPDP+FVMET+
Sbjct: 13 SKILQLQIVDALRSGERQGASALLFKLIQGNYSLSADDFHDILYYCARSPDPVFVMETYS 72
Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
+M +KEI L+++ L ++++LC GG+L++AS I+ + E I P+LP+YN FLGACA+
Sbjct: 73 VMCKKEISLDSRSLLFIVKSLCNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACART 132
Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231
S+ HA+ CL+LMD R VGKN +TY LLKLAV+Q+NLS V++IW+ Y+ HY+L I SLR
Sbjct: 133 RSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILSLR 192
Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN------- 284
+F+WSFTRL DLKSAYE LQHMV LA+ G+ ++ +++ G+L S+RL IP+P
Sbjct: 193 RFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKLHSTRLYIPVPSKDETGSEK 251
Query: 285 ------------------ALP-------VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319
ALP ++VLRWSF+DVIHACG+++NS LAEQLMLQM
Sbjct: 252 FAFGVTDRIVDCNSSSKVALPKGHNKILAIRVLRWSFNDVIHACGQSKNSELAEQLMLQM 311
Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379
Q+LGL PSSHTYDGFIRA+ G GM +LK+MQQ NLKP DST+AT++ CSKAL++
Sbjct: 312 QNLGLLPSSHTYDGFIRAVAFPEGYEYGMTLLKVMQQQNLKPYDSTLATVAAYCSKALQV 371
Query: 380 DLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSL 438
DLAE LLDQIS C+ PF+ LAA D++D+PERA+++ A+M++ KLRPD+RTYELLFSL
Sbjct: 372 DLAEHLLDQISECSYSYPFNNLLAAYDSLDQPERAVRVLARMKELKLRPDMRTYELLFSL 431
Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL--------------L 484
FGNVNAPYEEGNM SQVD KRINAIEMDM RN QHS IS N+ L
Sbjct: 432 FGNVNAPYEEGNMLSQVDCCKRINAIEMDMMRNGFQHSPISRLNVNNGLIVYTFLFLSQL 491
Query: 485 KALGAEGMIRELIQYF-------CDSKTPLGTPTYNTVLHSLVEAQE------------- 524
+ALGAEGM+ E+I++ S LGTPTYN VLHSL+EA E
Sbjct: 492 RALGAEGMVNEMIRHLQKAENLSAHSNMYLGTPTYNIVLHSLLEANEVSFHGLIALSNFH 551
Query: 525 ----------------SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
+ + IFK+MK+CG P + ATYNIMIDCCS+I +KSA ALVS
Sbjct: 552 WTSIYSNIDRYLNYMQTDMVINIFKRMKSCGCPADVATYNIMIDCCSLIHSYKSACALVS 611
Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
MM+RDGF P+ +T+TAL+KILL+ +F+EALNLLD +LE I DVL YNTIL+KA EKG
Sbjct: 612 MMIRDGFSPKAVTFTALMKILLNDANFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKG 671
Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTL 687
IDVIE+I+EQMH+ KV PDP+TCH+VFS YV G+H +A+EAL VLS+RML EE +L
Sbjct: 672 MIDVIEYIVEQMHREKVNPDPTTCHYVFSCYVEKGYHATAIEALNVLSLRMLNEEDKESL 731
Query: 688 EEKRSDFED-LILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRA 746
++K+ + E+ +++ED EAE++I++ S E+LA AALL LRWC ++G I WS D++
Sbjct: 732 QDKKIELEENFVMSEDPEAETKIIELFRKSEEHLA--AALLNLRWCAMLGGRIIWSEDQS 789
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443982|ref|XP_004139754.1| PREDICTED: pentatricopeptide repeat-containing protein At1g76280-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/807 (53%), Positives = 559/807 (69%), Gaps = 71/807 (8%)
Query: 5 LLRTRFQL--IADSFCKSKFHKHERRNVANKLELSRTLTTTMGL----NEESISKATQMQ 58
LR F+L IADS + K H+H R+ A+KL R L + G N + QMQ
Sbjct: 16 FLRASFRLGSIADSIYRFKPHEHVRKQDASKLVFHRALLISSGSEIWGNGAESTAFMQMQ 75
Query: 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI 118
IV+AL G+RSRAS+LL+ LG SL AD+F IL+YCA+SPDPLFVMETW++MEE+ I
Sbjct: 76 IVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGI 135
Query: 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178
LNN C LLM++ALCKGGYL+EA LI FL E + ++P LP YN FL ACA SMVHA+
Sbjct: 136 FLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHAS 195
Query: 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238
CLDLMD +MVGKNE TY+ELLKLAV QKNLS+VHEIW D++K+YS S+ SLRKF+WS+
Sbjct: 196 QCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSYA 255
Query: 239 RLRDLKSAYETLQHMVAL------------------------------------------ 256
R+ D+KSAY LQ MV L
Sbjct: 256 RMGDVKSAYTALQKMVTLNNGAAGRKLQSLDIPIPSRTELYRYNFNFEEKEPSIDEFFYK 315
Query: 257 ------AMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310
+G + ++ G + + L +P + V KVLRWS +DV+ AC N G
Sbjct: 316 KMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCG 375
Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
LAEQLM QM LGLQPSSHT+DGF+R++VS+RG GME+LK+MQQ L+P DST+A +S
Sbjct: 376 LAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTLAAVS 435
Query: 371 VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDI 429
V CSKALELDLAEALL+++S C P PF+AF +ACD MD+PERA+++ KM+Q K+ PD+
Sbjct: 436 VSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMKVAPDV 495
Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
RTYELL+SLFGNVNAPYEEG+ SQVD+AKR+ IEMDM ++ IQ+SH SM NLLKALG
Sbjct: 496 RTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLLKALGT 555
Query: 490 EGMIRELIQY-------FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
EGM +E++QY F + T LG P YNTVLH LV+++E+H A+E+F MK G P
Sbjct: 556 EGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKETHMAIELFNNMKRSGFFP 615
Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
+AAT+ +M+DCCS+I C KSA AL+S+M+R GF PQ +TYT+L+KI+L + FD+ALNLL
Sbjct: 616 DAATFEMMLDCCSVIGCLKSAFALLSLMIRSGFCPQILTYTSLVKIVLGFERFDDALNLL 675
Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
D S EGI DV++ NTI++KACEK RIDVIEF++E+M++ K+ PDPSTC VFS YVN
Sbjct: 676 DQASSEGIELDVIIMNTIMRKACEKARIDVIEFLVEKMNREKIPPDPSTCQNVFSTYVNL 735
Query: 663 GFHNSAMEALQVLSMRM-LCEE--VSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNEN 719
G+H++AMEALQVLSMRM LCEE S E E+ +LAED+ A+SRI +F + S E
Sbjct: 736 GYHSTAMEALQVLSMRMLLCEEDDASVTEY----MENFVLAEDTGADSRIAEFFKCSREY 791
Query: 720 LAFTAALLQLRWCTIVGFPISWSLDRA 746
L+F AL LRWC ++G+ + +S +++
Sbjct: 792 LSF--ALFNLRWCAMLGYSVCYSPNQS 816
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 764 | ||||||
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.679 | 0.823 | 0.212 | 3.1e-19 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.447 | 0.542 | 0.232 | 1.8e-17 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.401 | 0.532 | 0.246 | 8.4e-17 | |
| TAIR|locus:2061310 | 918 | GUN1 "AT2G31400" [Arabidopsis | 0.341 | 0.284 | 0.281 | 1.2e-16 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.447 | 0.543 | 0.237 | 2.2e-16 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.678 | 0.843 | 0.205 | 7.3e-16 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.430 | 0.295 | 0.212 | 8.8e-16 | |
| TAIR|locus:2098495 | 880 | AT3G07290 "AT3G07290" [Arabido | 0.445 | 0.386 | 0.211 | 9.2e-16 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.320 | 0.335 | 0.247 | 1.3e-15 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.578 | 0.586 | 0.202 | 2.3e-15 |
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 116/546 (21%), Positives = 221/546 (40%)
Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214
+P + ++ L A AK++ + M + + N TY+ L+ + LS
Sbjct: 78 FPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALA 137
Query: 215 IWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRL 272
+ +K Y I +L + F + A + MV + + N G
Sbjct: 138 VLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLF 197
Query: 273 RSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEXXXXXXXXXXXXXXXH 329
R +R + L V+K + ++ V++ + + LA
Sbjct: 198 RHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVV 257
Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKXXXXXXXXXXXXQ 388
Y+ I A+ + + + + + + M ++P T +L C+
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 389 ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAP 445
I R NP FSA + A K A K++ +M ++ + PDI TY L + F
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC----- 372
Query: 446 YEEGNMFSQVDSAKRINA--IEMDMARNNIQHSHISMKNLLKALGA-EGMIRELIQYFCD 502
M ++D AK + I D N + ++ + +K KA EGM EL +
Sbjct: 373 -----MHDRLDEAKHMFELMISKDCFPNVVTYNTL-IKGFCKAKRVDEGM--ELFREMSQ 424
Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFK 561
T TY T++H +A+E A +FKQM + G+ P+ TY+I++D C+ + +
Sbjct: 425 RGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKV-E 483
Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
+A + + R P TY +I+ + G ++ +L +SL+G+ +V+ Y T++
Sbjct: 484 TALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 543
Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
C KG + + + +M + PD T + + ++ G ++ E ++ +
Sbjct: 544 SGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFV 603
Query: 682 EEVSTL 687
+ ST+
Sbjct: 604 GDASTI 609
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 85/366 (23%), Positives = 163/366 (44%)
Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKXXXXXXXXXXXXQI 389
Y+ I + + + + + + K M+ ++P T ++L S C+ I
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318
Query: 390 SRCTNPKPFSAFLAACDTMDKPERAI---KIFAKM-RQKLRPDIRTYELLFSLFGNVNAP 445
R NP F+ F A D K + + K++ +M ++ + P I TY L + F
Sbjct: 319 ERKINPDVFT-FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC----- 372
Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SK 504
M ++D AK++ E M + ++ L+K + E ++ F + S+
Sbjct: 373 -----MHDRLDEAKQM--FEF-MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ 424
Query: 505 TPL--GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFK 561
L T TYN ++ L +A + A EIFK+M + G+PPN TYN ++D C + K
Sbjct: 425 RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEK 484
Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
A + + R P TY +I+ + G ++ +L +SL+G+ DV+ YNT++
Sbjct: 485 -AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMI 543
Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
C KG + + + ++M ++ P+ + + + G ++ E ++ +
Sbjct: 544 SGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFA 603
Query: 682 EEVSTL 687
+ ST+
Sbjct: 604 GDASTI 609
|
|
| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 8.4e-17, P = 8.4e-17
Identities = 81/329 (24%), Positives = 149/329 (45%)
Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKXXXXXXXXXXXXQI 389
Y I ++ R + + + M+ ++P T ++L S C+ I
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322
Query: 390 SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPY 446
R NP F+A + A K A K++ +M ++ + PDI TY L + F
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC------ 376
Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKT 505
M ++D AK + E+ ++++ + ++ L+ I E ++ F + S+
Sbjct: 377 ----MHDRLDEAKHM--FELMISKDCFPNV-VTYNTLINGFCKAKRIDEGVELFREMSQR 429
Query: 506 PL--GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKS 562
L T TY T++H +A++ A +FKQM + G+ PN TYN ++D C + K
Sbjct: 430 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEK- 488
Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
A + + R P TY +I+ + G ++ +L +SL+G+ DV++YNT++
Sbjct: 489 AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMIS 548
Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPST 651
C KG + + + +M ++ PD T
Sbjct: 549 GFCRKGLKEEADALFRKMREDGPLPDSGT 577
|
|
| TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 242 (90.2 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 78/277 (28%), Positives = 126/277 (45%)
Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
FSA ++A E AI +F M++ LRP++ TY + G + G F QV
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACG------KGGMEFKQV- 323
Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYN 513
AK + +M RN +Q I+ +LL G+ R L + + +YN
Sbjct: 324 -AKFFD----EMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378
Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
T+L ++ + + A EI QM I PN +Y+ +ID + F A L M
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438
Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
G ++Y L+ I G +EAL++L ++ GI DV+ YN +L ++G+ D +
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEV 498
Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
+ + +M + V P+ T + GY G + AME
Sbjct: 499 KKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAME 535
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 241 (89.9 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 87/366 (23%), Positives = 162/366 (44%)
Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKXXXXXXXXXXXXQI 389
Y I A+ + + + + + + M ++P T +L C+ I
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317
Query: 390 SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPY 446
R NP FSA + A K A K++ +M ++ + PDI TY L + F
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC------ 371
Query: 447 EEGNMFSQVDSAKRINA--IEMDMARNNIQHSHISMKNLLKALGAE-GMIRELIQYFCDS 503
M ++D AK + I D N + ++ + +K KA E GM EL +
Sbjct: 372 ----MHDRLDEAKHMFELMISKDCFPNVVTYNTL-IKGFCKAKRVEEGM--ELFREMSQR 424
Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
T TYNT++ L +A + A +IFK+M + G+PP+ TY+I++D + + K
Sbjct: 425 GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLD--GLCKYGKLE 482
Query: 564 SALV--SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
ALV + + P TY +I+ + G ++ +L +SL+G+ +V++Y T++
Sbjct: 483 KALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 542
Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
C KG + + + +M ++ P+ T + + + G ++ E ++ +
Sbjct: 543 SGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFV 602
Query: 682 EEVSTL 687
+ ST+
Sbjct: 603 GDASTI 608
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 112/545 (20%), Positives = 214/545 (39%)
Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214
+P + ++ L A AK+ + M+ V N TY ++ + LS
Sbjct: 62 FPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALA 121
Query: 215 IWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS-EGRL 272
I +K Y SI +L + F + A + MV + T G
Sbjct: 122 ILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLF 181
Query: 273 RSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEXXXXXXXXXXXXXXXH 329
+ ++ + L V+K + ++ VI+ + LA
Sbjct: 182 QHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVV 241
Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKXXXXXXXXXXXXQ 388
Y I ++ R + + + + M ++P T ++L S C+
Sbjct: 242 IYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM 301
Query: 389 ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAP 445
+ R NP F++ + A K A K+F +M Q+ + P+I TY L + F
Sbjct: 302 LERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFC----- 356
Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SK 504
M ++D A++I + M + ++ L+ + + ++ F D S+
Sbjct: 357 -----MHDRLDEAQQIFTL---MVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR 408
Query: 505 TPL--GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFK 561
L T TY T++H +A + A +FKQM + G+ PN TYN ++D C + K
Sbjct: 409 RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEK 468
Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
A + + + P TY + + + G ++ +L +SL+G+ DV+ YNT++
Sbjct: 469 -AMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMI 527
Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
C+KG + + +M ++ PD T + + ++ G ++ E ++ +
Sbjct: 528 SGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFA 587
Query: 682 EEVST 686
+ ST
Sbjct: 588 GDAST 592
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| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 190 (71.9 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
Identities = 74/348 (21%), Positives = 143/348 (41%)
Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNL-KPQDSTIATLSVECSKXXXXXXXXXXXXQI 389
++ I +I+++ G+ N + + + N + + DS + + K +
Sbjct: 716 WEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKF 775
Query: 390 SRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNA 444
++ +P ++ + D E A +F +++ PD+ TY L +G
Sbjct: 776 TKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYG---- 831
Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK 504
+ G + + K ++ E + N I H+ I + L+KA + + D
Sbjct: 832 --KSGKIDELFELYKEMSTHECEA--NTITHN-IVISGLVKAGNVDDALDLYYDLMSDRD 886
Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
TY ++ L ++ + A ++F+ M G PN A YNI+I+ +A
Sbjct: 887 FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAAC 946
Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
AL MV++G P TY+ L+ L G DE L+ + G+ DV+ YN I+
Sbjct: 947 ALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGL 1006
Query: 625 CEKGRIDVIEFIIEQMHQNK-VQPDPSTCHFVFSGYVNCGFHNSAMEA 671
+ R++ + +M ++ + PD T + + +N G EA
Sbjct: 1007 GKSHRLEEALVLFNEMKTSRGITPDLYTYNSLI---LNLGIAGMVEEA 1051
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| TAIR|locus:2098495 AT3G07290 "AT3G07290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 195 (73.7 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
Identities = 75/354 (21%), Positives = 143/354 (40%)
Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKXXXXXXXXXXXX 387
HTY I + D + V + M ++ + P T A ++ C
Sbjct: 337 HTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTV 396
Query: 388 QISRCTNP--KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNA 444
R P + F+ + + KP +A+ + +M L PDI +Y +L ++
Sbjct: 397 MEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVL------IDG 450
Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK 504
EG+M + +N D+ + + + I N G + +
Sbjct: 451 LCREGHMNTAYKLLSSMNCF--DIEPDCLTFTAII--NAFCKQGKADVASAFLGLMLRKG 506
Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
L T T++ + + ++ A+ I + + I + N+++D S K
Sbjct: 507 ISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEEL 566
Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
A++ + + G P +TYT L+ L+ GD + +L+L+ L G +V Y I+
Sbjct: 567 AMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGL 626
Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
C+ GR++ E ++ M + V P+ T + GYVN G + A+E ++ + R
Sbjct: 627 CQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVER 680
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| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 202 (76.2 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 62/251 (24%), Positives = 107/251 (42%)
Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCF 560
D P T +N ++ + + A+EIF++M G P+ T+N +I C +
Sbjct: 453 DGLKP-NTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDE-I 510
Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
K A L+ M+ +G T+TY LI L G+ EA L++ + +G P D + YN++
Sbjct: 511 KHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSL 570
Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
+K C G +D + E+M ++ P +C+ + +G G A+E + + +R
Sbjct: 571 IKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGS 630
Query: 681 CEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGFPIS 740
++ T + ED R LQ + + F + W GF
Sbjct: 631 TPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLM---SWLCKGGFVYD 687
Query: 741 WSLDRASGLED 751
L G+ED
Sbjct: 688 ACLLLDEGIED 698
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| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 229 (85.7 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 98/484 (20%), Positives = 198/484 (40%)
Query: 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT-------RLRDLKSAYE 248
Y +L L V +L V I H +S++ ++ V +F R L+ A
Sbjct: 157 YNRMLNLLVDGNSLKLVE------ISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAIL 210
Query: 249 TLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS---FSDVIHA-C 303
L+ M + ++ + +G + LD + + V WS + ++H C
Sbjct: 211 MLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFC 270
Query: 304 --GRTQNSGLAEXXXXXXXXXXXXXXXHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
GR +++ +T++ + + +++ +E++ +M Q P
Sbjct: 271 KEGRVEDA--LNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP 328
Query: 362 QDSTI-ATLSVECSKXXXXXXXXXXXXQISR-CT-NPKPFSAFLAACDTMDKPERAIKIF 418
T + +S C I+R C+ N ++ ++ ++ E A ++
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 419 AKMRQK-LRPDIRTYELLFS---LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
+ K + PD+ T+ L L N E +F ++ R E D N+
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAME---LFEEM----RSKGCEPDEFTYNML 441
Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
+ K L A M++++ C +++ + TYNT++ +A ++ A EIF +
Sbjct: 442 IDSLCSKGKLDE--ALNMLKQMELSGC-ARSVI---TYNTLIDGFCKANKTREAEEIFDE 495
Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
M+ G+ N+ TYN +ID R + A+ L+ M+ +G P TY +L+ GD
Sbjct: 496 MEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGD 555
Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
+A +++ ++ G D++ Y T++ C+ GR++V ++ + + P +
Sbjct: 556 IKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNP 615
Query: 655 VFSG 658
V G
Sbjct: 616 VIQG 619
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SGQ6 | PP126_ARATH | No assigned EC number | 0.5436 | 0.8821 | 0.8719 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00015570001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (768 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 764 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 2e-12
Identities = 82/378 (21%), Positives = 165/378 (43%), Gaps = 53/378 (14%)
Query: 285 ALPVMKVLRWS--------FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
AL V+++++ + ++ +I C ++ ++ +M + G++ + HT+ I
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI- 514
Query: 337 AIVSDRGLRNGMEVLK------IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
D R G +V K IM+ N+KP L C ++ +D A +L ++
Sbjct: 515 ----DGCARAG-QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569
Query: 391 RCTNP-KP----FSAFLAACDTMDKPERAIKIFAKMRQ---KLRPDIRTYELLFSLFGNV 442
T+P P A + AC + +RA +++ + + K P++ T V
Sbjct: 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA--------V 621
Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
N+ ++G+ D A +I DM + ++ + L+ G G + + + D
Sbjct: 622 NSCSQKGD----WDFAL---SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674
Query: 503 SKT---PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
++ LGT +Y++++ + A+ +A+E+++ +K+ + P +T N +I
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734
Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
A ++S M R G P T+TY+ L+ D D L+LL +GI ++++
Sbjct: 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794
Query: 620 I-------LKKACEKGRI 630
I +KAC G
Sbjct: 795 ITGLCLRRFEKACALGEP 812
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Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 5e-12
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
TYNT++ + + A+++F +MK GI PN TY+I+ID
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 69/334 (20%), Positives = 127/334 (38%), Gaps = 47/334 (14%)
Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381
L P+ T++ + S + + + VL+++Q+ LK TL C+K+ ++D
Sbjct: 431 LIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490
Query: 382 AEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
+ ++ N F A + C + +A + MR K ++PD + L S
Sbjct: 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550
Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
G A VD A + A EM + I HI++ L+KA
Sbjct: 551 ACGQSGA----------VDRAFDVLA-EMKAETHPIDPDHITVGALMKA----------- 588
Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
C A + RA E+++ + I Y I ++ CS
Sbjct: 589 ---C------------------ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627
Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
+ A ++ M + G P + ++AL+ + GD D+A +L +GI + Y
Sbjct: 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687
Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
++++ + E + K++P ST
Sbjct: 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721
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Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 9e-06
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
P+ TYN +ID + A L + M + G P TY+ LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 1e-04
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
TYNT++ L +A A+E+FK+MK GI P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
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This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 7e-04
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
TYN +L +L +A + A+ + ++MK G+ P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.001
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
P +TY LI G +EAL L + + GI +V Y+ ++ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 764 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.7 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.63 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.63 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.61 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.61 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.52 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.51 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.51 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.48 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.44 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.44 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.43 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.43 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.37 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.34 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.34 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.34 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.34 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.33 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.33 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.33 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.3 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.29 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.29 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.26 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.26 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.21 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.19 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.19 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.18 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.15 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.13 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.11 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.11 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.09 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.04 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.03 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.99 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.97 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.97 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.96 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.94 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.94 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.93 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.91 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.89 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.88 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.85 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.84 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.84 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.83 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.82 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.8 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.77 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.76 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.72 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.66 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.63 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.62 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.59 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.57 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.56 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.52 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.5 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.49 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.48 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.42 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.42 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.39 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.36 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.35 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.35 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.33 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.33 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.32 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.32 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.31 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.27 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.25 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.24 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.24 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.2 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.1 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.09 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.04 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.03 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.01 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.01 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.01 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.99 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.98 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.96 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.95 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.94 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.9 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.9 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.9 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.81 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.76 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.76 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.76 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.74 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.69 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.68 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.66 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.66 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.64 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.63 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.62 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.59 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.58 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.56 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.56 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.55 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.5 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.42 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.36 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.14 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.13 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.13 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.12 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.1 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.09 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.08 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.06 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.05 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.02 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.02 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.02 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.01 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.99 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.94 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.91 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.9 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.9 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.88 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.87 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.85 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.85 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.81 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.8 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.77 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.69 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.66 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.65 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.63 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.62 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.6 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.53 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.52 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.5 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.5 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.43 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.43 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.41 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.36 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.35 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.22 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.21 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.19 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.18 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.15 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.15 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.1 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.07 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.07 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.02 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.99 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.93 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.83 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.79 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.78 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.77 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.71 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.55 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.55 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.48 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.41 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.33 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.31 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.28 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.05 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.04 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.84 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.82 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.7 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.67 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.67 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.52 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.51 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.42 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.14 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.08 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.94 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.85 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.84 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.83 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.76 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.69 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.63 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.58 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.56 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.54 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.46 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.34 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.34 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.18 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.05 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.01 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.97 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.85 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.76 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.71 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.6 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.5 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.38 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.08 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.85 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.84 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 91.78 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.37 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.79 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.76 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.17 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.0 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.84 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 89.79 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.45 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.25 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.15 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 88.99 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.8 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.62 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 88.41 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.26 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 88.14 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.13 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.46 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.41 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.38 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.86 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 86.5 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.5 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.2 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 86.09 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.6 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.49 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 84.91 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 84.9 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.67 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.64 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.36 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 84.34 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 84.23 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.58 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.69 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.67 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 82.37 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.34 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 81.08 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 81.06 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 80.86 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-88 Score=779.38 Aligned_cols=658 Identities=15% Similarity=0.154 Sum_probs=609.9
Q ss_pred HHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcch
Q 004273 10 FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD 89 (764)
Q Consensus 10 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 89 (764)
...++..|++.|+.++|. .+|+++ |+++..+|+.+|.+|++.|++++|+++|++|...|+.||..|
T Consensus 124 ~n~li~~~~~~g~~~~A~-~~f~~m-------------~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t 189 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAW-YVFGKM-------------PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT 189 (857)
T ss_pred HHHHHHHHHhCCChHHHH-HHHhcC-------------CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 456788899999999999 555555 345678899999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
|+.++++|+..+++..+.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||.++||+||.+|+
T Consensus 190 ~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~ 264 (857)
T PLN03077 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYF 264 (857)
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999963 68899999999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc-cCCCCHHhHHHHHHHhhccCCHHHHHH
Q 004273 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
+.|++++|+++|++|.+.|+.||..||+.+|.+|.+.|+++.+.+++..+.+ +..||..+|+.|+.+|++.|++++|.+
T Consensus 265 ~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997 699999999999999999999999999
Q ss_pred HHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc
Q 004273 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328 (764)
Q Consensus 249 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 328 (764)
+|++|.+ |+. .+||++|.+|++.|++++|+++|++|.+.|+.||.
T Consensus 345 vf~~m~~----~d~-------------------------------~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~ 389 (857)
T PLN03077 345 VFSRMET----KDA-------------------------------VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389 (857)
T ss_pred HHhhCCC----CCe-------------------------------eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc
Confidence 9999964 444 69999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcC
Q 004273 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM 408 (764)
Q Consensus 329 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 408 (764)
.||+.++.+|++.|+++.|.++++.|.+.|+.|+..++++||++|+++|++++|.++|++|.+. |.++||++|.+|++.
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLN 468 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred CCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHh
Q 004273 409 DKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488 (764)
Q Consensus 409 g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 488 (764)
|+.++|+.+|++|..+++||..||+.+|.+|++.|.+ +....++..+.+.|+.++..++|+|+++|+
T Consensus 469 g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l-------------~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 469 NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL-------------MCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH-------------HHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 9999999999999889999999999999999998765 566778889999999999999999999999
Q ss_pred ccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 004273 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568 (764)
Q Consensus 489 ~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 568 (764)
++|++++|.++|+.+ .+|.++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+
T Consensus 536 k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 536 RCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 999999999999998 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004273 569 MMV-RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647 (764)
Q Consensus 569 ~~~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 647 (764)
.|. +.|+.|+..+|++++++|++.|++++|.+++++| +++||..+|++|+.+|..+|+.+.++...+++.+ +.|
T Consensus 614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p 688 (857)
T PLN03077 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDP 688 (857)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCC
Confidence 999 6799999999999999999999999999999998 4799999999999999999999999999999985 677
Q ss_pred CHhhHHHH-HHHHHhcCChHHHHHHHHHHHHhhhcccc-CchHhhHHHHHHhhhhccHHHH-------------------
Q 004273 648 DPSTCHFV-FSGYVNCGFHNSAMEALQVLSMRMLCEEV-STLEEKRSDFEDLILAEDSEAE------------------- 706 (764)
Q Consensus 648 ~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------- 706 (764)
+...++.+ .+.|+..|+|++|.++.+.|+.+|+.+.+ ++|+++.+.++.|+.++..++.
T Consensus 689 ~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 768 (857)
T PLN03077 689 NSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASG 768 (857)
T ss_pred CCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCC
Confidence 76655554 56999999999999999999999998765 7887776666666555433211
Q ss_pred -------------HHHHHHhhhcchhhHHHHhhhhhhhhhccCCccccccccc
Q 004273 707 -------------SRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRA 746 (764)
Q Consensus 707 -------------~~~~~~~~~~~e~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 746 (764)
.+--+.+..|+|+||+++||+++ ++|.||++.|+-.
T Consensus 769 ~~~~~~~~~~~~~~~k~~~~~~hse~la~a~~l~~~----~~~~~i~i~knlr 817 (857)
T PLN03077 769 LAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINT----VPGMPIWVTKNLY 817 (857)
T ss_pred cCCCcchhccccHHHHHHHHHhccHHHHHHHhhhcC----CCCCeEEEeCCCE
Confidence 11223466799999999999999 9999999998754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-79 Score=704.89 Aligned_cols=602 Identities=15% Similarity=0.168 Sum_probs=535.1
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH
Q 004273 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (764)
+.+....++.++..+++.|++++|..+|+.|.+.|++|+..+|..++.+|.+.+..+.+.+++..+.+.+..++...+|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 44556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcc
Q 004273 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
++..|++.|+++.|.++|++|.+ ||..+||+||.+|++.|++++|+++|++|...|+.||..||+++|++|...+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 99999999999999999999963 7899999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHc-cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcc
Q 004273 208 NLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 208 ~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
++..+.+++..+.+ +..||..+++.|+.+|++.|+++.|.++|++|.+ |+.
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~------------------------ 253 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDC------------------------ 253 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCc------------------------
Confidence 99999999999997 6999999999999999999999999999999974 443
Q ss_pred cchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHH
Q 004273 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 366 (764)
.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|
T Consensus 254 -------~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 254 -------ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred -------chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCc
Q 004273 367 ATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAP 445 (764)
Q Consensus 367 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~ 445 (764)
++|+.+|+++|++++|.++|++|... |.++||++|.+|++.|++++|+++|++|.+ |+.||..||+.++.+|++.|++
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence 99999999999999999999999887 999999999999999999999999999999 9999999999999999998765
Q ss_pred hhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCh
Q 004273 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525 (764)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 525 (764)
+.+..++..+.+.|+.|+..++++|+++|+++|++++|.++|+++ ..+|.++||++|.+|++.|+.
T Consensus 406 -------------~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m-~~~d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 406 -------------DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI-PEKDVISWTSIIAGLRLNNRC 471 (857)
T ss_pred -------------HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCeeeHHHHHHHHHHCCCH
Confidence 555677888999999999999999999999999999999999998 568999999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004273 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605 (764)
Q Consensus 526 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 605 (764)
++|+.+|++|.. +++||..||+.+|.+|++.|+++.+.+++..+.+.|+.+|..++|+||++|+++|++++|.++|+.+
T Consensus 472 ~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 472 FEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 999999999986 5999999999999999999999999999999999888777777777777777777777777776664
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH-Hhhhcccc
Q 004273 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS-MRMLCEEV 684 (764)
Q Consensus 606 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~ 684 (764)
.||..+|++||.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. ..++.|..
T Consensus 551 -----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 551 -----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred -----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 566677777777777777777777777777766777777777777777777777777777777666 34554432
Q ss_pred CchHhhHHHHHHhhhhccHHHHHHHHHHh
Q 004273 685 STLEEKRSDFEDLILAEDSEAESRILQFC 713 (764)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (764)
......+..+...++.+.+.++++.+
T Consensus 626 ---~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 626 ---KHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred ---HHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 23344455555555555555554443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-72 Score=630.44 Aligned_cols=532 Identities=14% Similarity=0.187 Sum_probs=464.3
Q ss_pred CChhhhHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhccChhHHHHHHHHHHc-cCCCCHHhHHHH
Q 004273 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKF 233 (764)
Q Consensus 156 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l 233 (764)
++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|.+.++++.+.+++..+.+ +..||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 344566666666666666666666666666543 556666666666666666666666666666664 466677777777
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHH
Q 004273 234 VWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313 (764)
Q Consensus 234 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 313 (764)
+.+|++.|+++.|.++|++|.+ |+. .+||++|.+|++.|++++|+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~-------------------------------~t~n~li~~~~~~g~~~~A~ 209 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNL-------------------------------ASWGTIIGGLVDAGNYREAF 209 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCe-------------------------------eeHHHHHHHHHHCcCHHHHH
Confidence 7788889999999999999864 454 69999999999999999999
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004273 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393 (764)
Q Consensus 314 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 393 (764)
++|++|.+.|+.||..||+.++.+|++.|+...+.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|...
T Consensus 210 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~- 288 (697)
T PLN03081 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK- 288 (697)
T ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCC
Q 004273 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472 (764)
Q Consensus 394 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (764)
|+++||+||.+|++.|++++|+++|++|.+ |+.||..||++++.+|++.|.+ +.+..++..|.+.|
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~-------------~~a~~i~~~m~~~g 355 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL-------------EHAKQAHAGLIRTG 355 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch-------------HHHHHHHHHHHHhC
Confidence 999999999999999999999999999999 9999999999999999998765 45567788899999
Q ss_pred CCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004273 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552 (764)
Q Consensus 473 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 552 (764)
+.||..++++|+++|+++|++++|.++|+++ ..||+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+++|.
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m-~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRM-PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhC-CCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999998 568999999999999999999999999999999999999999999999
Q ss_pred HHHccCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004273 553 CCSIIRCFKSASALVSMMVR-DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631 (764)
Q Consensus 553 ~~~~~~~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 631 (764)
+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++| ++.|+..+|++|+.+|+.+|+++
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999986 699999999999999999999999999999876 68999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHhhhccc-cCchHhhHHHHHHhhhhccHHHH---
Q 004273 632 VIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFEDLILAEDSEAE--- 706 (764)
Q Consensus 632 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--- 706 (764)
.|..+++++. ++.|+ ..+|..|+++|++.|+|++|.++++.|+.+|+.+. +++|.++.+.++.|+.++..+..
T Consensus 512 ~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~ 589 (697)
T PLN03081 512 LGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589 (697)
T ss_pred HHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHH
Confidence 9999999997 56675 67999999999999999999999999999998643 46776655444444443322211
Q ss_pred ------------------------------HHHHHHhhhcchhhHHHHhhhhhhhhhccCCccccccccc
Q 004273 707 ------------------------------SRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRA 746 (764)
Q Consensus 707 ------------------------------~~~~~~~~~~~e~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 746 (764)
.+-.+.+..|+|+||++++|+++ ++|.||+..|+-.
T Consensus 590 i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~----~~~~~i~i~knlr 655 (697)
T PLN03081 590 IYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT----SEWTPLQITQSHR 655 (697)
T ss_pred HHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccC----CCCCeEEEecCCE
Confidence 11123366799999999999999 9999999998754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-69 Score=600.60 Aligned_cols=516 Identities=16% Similarity=0.234 Sum_probs=472.3
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 004273 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE 198 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 198 (764)
.++...|..++..|++.|++++|.++|++|.+..-+.++..+++.++.+|.+.|.+++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 56777888999999999999999999999976544567888888999999999999999999998875 89999999
Q ss_pred HHHHHHhccChhHHHHHHHHHHc-cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccccccccccc
Q 004273 199 LLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 277 (764)
+|.+|++.|+++.|.++|+.|.+ +..||..+|+.||.+|++.|+++.|.++|++|.+.|+.|+.
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv--------------- 507 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV--------------- 507 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH---------------
Confidence 99999999999999999999986 58999999999999999999999999999999999999987
Q ss_pred CCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH-
Q 004273 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ- 356 (764)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~- 356 (764)
.+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+
T Consensus 508 ----------------vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~ 571 (1060)
T PLN03218 508 ----------------HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571 (1060)
T ss_pred ----------------HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999999999999999999999999999976
Q ss_pred -CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHh
Q 004273 357 -NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRT 431 (764)
Q Consensus 357 -~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t 431 (764)
.|+.||..+|+++|.+|++.|++++|.++|+.|.+.+ +..+||++|.+|++.|++++|+++|++|.+ |+.||..|
T Consensus 572 ~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~T 651 (1060)
T PLN03218 572 THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651 (1060)
T ss_pred cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 6789999999999999999999999999999998875 678999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc---CCCCC
Q 004273 432 YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS---KTPLG 508 (764)
Q Consensus 432 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~ 508 (764)
|+.++.+|++.|+. +.+..++..|.+.|+.|+..+|++|+.+|+++|++++|.++|++| +..||
T Consensus 652 ynsLI~a~~k~G~~-------------eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd 718 (1060)
T PLN03218 652 FSALVDVAGHAGDL-------------DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718 (1060)
T ss_pred HHHHHHHHHhCCCH-------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999988765 445567778999999999999999999999999999999999887 46799
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004273 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 509 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++|+..
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHh----c-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004273 589 LLD----Y-------------------GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645 (764)
Q Consensus 589 ~~~----~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 645 (764)
|.+ + +..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+.
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~ 878 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD 878 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCC
Confidence 432 2 12467999999999999999999999999888889999999999999988889
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHhhhcccc
Q 004273 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684 (764)
Q Consensus 646 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 684 (764)
.|+..+|++++.++.+. .++|..++++|...|+.|..
T Consensus 879 ~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 879 SQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 99999999999998432 36899999999999998875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-67 Score=589.30 Aligned_cols=516 Identities=16% Similarity=0.215 Sum_probs=479.1
Q ss_pred CCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004273 84 SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI-GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 84 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 162 (764)
.++...|..++..|.+.|+++.|+++|++|.+.|+ +++..+++.++..|++.|.+++|..+|+.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHH
Confidence 46677799999999999999999999999999985 57788888999999999999999999998853 8999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc-cCCCCHHhHHHHHHHhhccC
Q 004273 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLR 241 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g 241 (764)
.||.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|+.|.+ +..||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999986 58899999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 242 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
++++|.++|+.|.+.|+.|+. .+|++||.+|++.|++++|.++|++|..
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~-------------------------------vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDR-------------------------------VVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCH-------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999997 7999999999999999999999999986
Q ss_pred --CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCc
Q 004273 322 --LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPK 396 (764)
Q Consensus 322 --~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~ 396 (764)
.|+.||..||+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...+ |..
T Consensus 571 ~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~ 650 (1060)
T PLN03218 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650 (1060)
T ss_pred hcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999999876 888
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCC
Q 004273 397 PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475 (764)
Q Consensus 397 ~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (764)
+|+++|.+|++.|++++|.++|++|.+ |+.||..+|+++|.+|++.|.++++ ..++..|.+.|+.|
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA-------------~~lf~eM~~~g~~P 717 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA-------------LELYEDIKSIKLRP 717 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH-------------HHHHHHHHHcCCCC
Confidence 999999999999999999999999999 9999999999999999999876444 45566788889999
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHhc---CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004273 476 SHISMKNLLKALGAEGMIRELIQYFCDS---KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552 (764)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 552 (764)
|..+|+.||.+|++.|++++|.++|++| +..||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|++++.
T Consensus 718 dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999876 5679999999999999999999999999999999999999999999997
Q ss_pred HHHc----c-------------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004273 553 CCSI----I-------------------RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609 (764)
Q Consensus 553 ~~~~----~-------------------~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 609 (764)
.|.+ . +..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+
T Consensus 798 lc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 798 LCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 6542 1 1236799999999999999999999999999999999999999999998889
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh
Q 004273 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 610 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
..|+..+|++||+++++. .++|..++++|...|+.|+..
T Consensus 878 ~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999998532 478999999999999999986
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=558.70 Aligned_cols=468 Identities=15% Similarity=0.140 Sum_probs=399.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhcc-CCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAH-HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 130 (764)
...|..++..+.+.|++++|+++|+.|...+ ..|+..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+|+.++.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 3478899999999999999999999998764 678999999999999999999999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChh
Q 004273 131 ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 210 (764)
+|++.|++++|.++|++|.+ ||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|...|+.+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999963 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc-cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccch
Q 004273 211 AVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289 (764)
Q Consensus 211 ~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (764)
.+.+++..+.+ +..+|..+|+.|+.+|+++|++++|.++|+.|.+ ++.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~--------------------------- 290 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTT--------------------------- 290 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CCh---------------------------
Confidence 99999999987 5899999999999999999999999999999964 333
Q ss_pred hhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHH
Q 004273 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369 (764)
Q Consensus 290 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 369 (764)
.+||++|.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..++++|
T Consensus 291 ----vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 291 ----VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred ----hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCchhh
Q 004273 370 SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEE 448 (764)
Q Consensus 370 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~ 448 (764)
+++|+++|++++|.++|++|.+. |..+||+||.+|++.|+.++|+++|++|.+ |+.||..||+.+|.+|++.|..+++
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999887 999999999999999999999999999999 9999999999999888877655333
Q ss_pred chhhhhhhhHHHHHHHHHHHHH-CCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhH
Q 004273 449 GNMFSQVDSAKRINAIEMDMAR-NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527 (764)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 527 (764)
..++..|.+ .|+.|+..+|+.++++|++.|++++|.++++++...|+..+|++++.+|..+|+.+.
T Consensus 446 -------------~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 446 -------------WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred -------------HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHH
Confidence 333444443 466666555666666665555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 004273 528 AMEIFKQMKTCGIPP-NAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575 (764)
Q Consensus 528 A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 575 (764)
|..+++++.+. .| +..+|..+++.|++.|++++|.++++.|.+.|+
T Consensus 513 a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 513 GRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 55555555432 23 234555555555555555555555555555554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=323.49 Aligned_cols=632 Identities=11% Similarity=-0.018 Sum_probs=499.7
Q ss_pred hhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCC
Q 004273 7 RTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLG 86 (764)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~ 86 (764)
..........+...|++++|+ ..+ ...+...|+.. ..+......+...|++++|...|+.+.+.. +.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~A~-~~~---------~~~l~~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 328 (899)
T TIGR02917 261 PLAHYLKALVDFQKKNYEDAR-ETL---------QDALKSAPEYL-PALLLAGASEYQLGNLEQAYQYLNQILKYA-PNS 328 (899)
T ss_pred chHHHHHHHHHHHhcCHHHHH-HHH---------HHHHHhCCCch-hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 334445566678899999999 333 33445555532 223344556778999999999999988765 345
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
...+..+...+...|+++.|.+.++.+.+.+ +.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+..
T Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 405 (899)
T TIGR02917 329 HQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGI 405 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 5667778888889999999999999998775 5567788899999999999999999999986532 335567888888
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH
Q 004273 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
.+...|++++|.+.|+.+.+.... .......++..+...|++++|.++++.+.+..+.++.++..+..+|...|++++|
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999876533 3345566777889999999999999999988888899999999999999999999
Q ss_pred HHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 004273 247 YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326 (764)
Q Consensus 247 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 326 (764)
...|+++.+ ..|+.. ..+..+...+...|++++|.+.|+++.+.+ +.
T Consensus 485 ~~~~~~a~~--~~~~~~------------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 531 (899)
T TIGR02917 485 REAFEKALS--IEPDFF------------------------------PAAANLARIDIQEGNPDDAIQRFEKVLTID-PK 531 (899)
T ss_pred HHHHHHHHh--hCCCcH------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC
Confidence 999999987 444431 477788899999999999999999998764 33
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHH
Q 004273 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAA 404 (764)
Q Consensus 327 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~ 404 (764)
+..++..+...+.+.|+.++|..+++++.+.+.. +...+..++..|.+.|++++|..+++.+.... +...|..+...
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 610 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRA 610 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5677888888999999999999999999887643 56677788999999999999999999987653 66788999999
Q ss_pred HhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 004273 405 CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484 (764)
Q Consensus 405 ~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (764)
|.+.|++++|+..|+++.+..+.+...+..+...+...|++.++...+ ..+.+. .+.+...+..+.
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-------------~~~~~~-~~~~~~~~~~l~ 676 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL-------------KRALEL-KPDNTEAQIGLA 676 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH-------------HHHHhc-CCCCHHHHHHHH
Confidence 999999999999999998722335566777777777777765554333 223322 234567788899
Q ss_pred HHHhccCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhH
Q 004273 485 KALGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562 (764)
Q Consensus 485 ~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 562 (764)
..+...|++++|.++++.+. .+.+...+..+...+...|++++|+..|+++...+ |+..++..+..++.+.|++++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence 99999999999999988763 23456678888889999999999999999998864 566778888889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004273 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 563 a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
|...++.+.+.. +.+...+..+...|.+.|++++|.++|+++.+.. +++..+++.+...+...|+ .+|+..++++.+
T Consensus 755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 755 AVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 999999988764 4577888889999999999999999999998754 5678889999999999999 889999999986
Q ss_pred CCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhHHHHHHhhhhccHHHHHHHHHHh
Q 004273 643 NKVQP-DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFC 713 (764)
Q Consensus 643 ~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (764)
. .| +..++..+..++...|++++|.++++++...+.. ...........+...++.+.+..+++.+
T Consensus 832 ~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 832 L--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE----AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred h--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 34 3445566677889999999999999988765432 2333344566777778888777776654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=316.86 Aligned_cols=606 Identities=12% Similarity=0.001 Sum_probs=499.2
Q ss_pred cccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 004273 3 RPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAH 82 (764)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~ 82 (764)
.|.....+..++..+...|++++|. ..++.+ ....|......+ .....+...|++++|+..|+.+.+.+
T Consensus 223 ~p~~~~~~~~~~~~~~~~g~~~~A~-~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~l~~~ 291 (899)
T TIGR02917 223 RPNNPAVLLALATILIEAGEFEEAE-KHADAL---------LKKAPNSPLAHY-LKALVDFQKKNYEDARETLQDALKSA 291 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH---------HHhCCCCchHHH-HHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4666677888999999999999999 444433 444454333322 23444667899999999999998765
Q ss_pred CCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004273 83 HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 83 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 162 (764)
+.....+..+...+...|+++.|...++.+.+.. +.+...+..+...+.+.|++++|...++.+.+.. +.+...++
T Consensus 292 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 367 (899)
T TIGR02917 292 -PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAALS 367 (899)
T ss_pred -CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHH
Confidence 2223344555667778999999999999998874 4566778888999999999999999999987543 44667899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCC
Q 004273 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.+...+.+.|++++|.++|+.+.+..+ .+...+..+...+...|++++|.+.++.+.+..+........++..+.+.|+
T Consensus 368 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC
Confidence 999999999999999999999987643 2556777788888999999999999999998766677778888999999999
Q ss_pred HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 243 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
++.|.++++.+.+. .|+. ..+|+.+...+...|++++|.+.|+++.+.
T Consensus 447 ~~~A~~~~~~~~~~--~~~~------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 447 FDKALAAAKKLEKK--QPDN------------------------------ASLHNLLGAIYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred HHHHHHHHHHHHHh--CCCC------------------------------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 99999999999873 3332 158999999999999999999999999875
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHH
Q 004273 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSA 400 (764)
Q Consensus 323 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~ 400 (764)
. +.+...+..+...+...|++++|..+++.+.+.+.. +..++..+...+.+.|+.++|...++++.... +...+..
T Consensus 495 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 572 (899)
T TIGR02917 495 E-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALA 572 (899)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHH
Confidence 4 234456777888899999999999999999987654 67788899999999999999999999986653 6677888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHH
Q 004273 401 FLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480 (764)
Q Consensus 401 li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (764)
+...|.+.|++++|..+++++....+.+..++..+..++...|++.++...+. .+.+.. +.+...+
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-------------~~~~~~-~~~~~~~ 638 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK-------------KLLALQ-PDSALAL 638 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-------------HHHHhC-CCChHHH
Confidence 99999999999999999999988555677888888899988887765544333 333322 3456678
Q ss_pred HHHHHHHhccCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 004273 481 KNLLKALGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558 (764)
Q Consensus 481 ~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 558 (764)
..+...|.+.|++++|...|++.. .+.+..+|..++..+...|++++|..+++.+.+.+ +++...+..+...+...|
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCC
Confidence 889999999999999999998752 23457799999999999999999999999999875 457778888899999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004273 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638 (764)
Q Consensus 559 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 638 (764)
++++|...|+.+.+.+ |+..++..+..++.+.|++++|.+.++++.... +.+...+..+...|...|+.++|...|+
T Consensus 718 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 718 DYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 9999999999999864 555778889999999999999999999998753 5678899999999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004273 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 639 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
++.+.. +++...+..+...+...|+ ++|++++++....
T Consensus 795 ~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 795 TVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999753 4567788888899999999 8899999987653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-23 Score=241.15 Aligned_cols=619 Identities=11% Similarity=0.012 Sum_probs=431.0
Q ss_pred CcccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHH---------------HHHHHHHHHhcC
Q 004273 2 YRPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKA---------------TQMQIVDALCRG 66 (764)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~---------------~~~~i~~~~~~~ 66 (764)
..|..-..+...+..+.+.|+.++|. .. +.......|+..... .......+...|
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~-~~---------l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g 126 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQ-KL---------LDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTG 126 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHH-HH---------HHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 35666677888889999999999999 33 334455566543321 233445678899
Q ss_pred CcchHHHHHHHhhhccCCCCcch-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004273 67 ERSRASHLLLNLGHAHHSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI 145 (764)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 145 (764)
++++|++.|+++.+.+ +++... ...........|+.++|++.++++.+.. +.+...+..+...+...|+.++|+..|
T Consensus 127 ~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l 204 (1157)
T PRK11447 127 RTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVL 204 (1157)
T ss_pred CHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999998765 344322 1122222335689999999999999985 556778889999999999999999999
Q ss_pred HHHhhhcCCC---------------CC---hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcc
Q 004273 146 YFLGERYGIY---------------PI---LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 146 ~~~~~~~~~~---------------~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
+++.+..... ++ ...+...+..+-.......|...+..+......|+... ...-..+...|
T Consensus 205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g 283 (1157)
T PRK11447 205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSG 283 (1157)
T ss_pred HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCC
Confidence 9985421100 00 00122222222223334556666666554433333322 12344567899
Q ss_pred ChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCccc
Q 004273 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (764)
++++|...|++..+..+.+..++..+..+|.+.|++++|+..|++..+. .|+..........+
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~--~p~~~~~~~~~~ll--------------- 346 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL--DPHSSNRDKWESLL--------------- 346 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCccchhHHHHHH---------------
Confidence 9999999999999988889999999999999999999999999999873 34321000000000
Q ss_pred chhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHH
Q 004273 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367 (764)
Q Consensus 288 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 367 (764)
.....+........+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.|+++.+.... +...+.
T Consensus 347 -~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~ 423 (1157)
T PRK11447 347 -KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVR 423 (1157)
T ss_pred -HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 00000111223456788999999999999999864 224556777888999999999999999999987544 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC-----------CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCC-HHhHHHH
Q 004273 368 TLSVECSKALELDLAEALLDQISRCT-----------NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPD-IRTYELL 435 (764)
Q Consensus 368 ~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~-~~t~~~l 435 (764)
.+...|. .++.++|..+++.+.... ....+..+...+...|++++|+..|++..+ ..|+ ...+..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~-~~P~~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA-LDPGSVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHH
Confidence 6777664 467899999988764321 123455667788899999999999999987 3344 4445555
Q ss_pred HHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCC---CCh---
Q 004273 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP---LGT--- 509 (764)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~--- 509 (764)
-..+...|++.++... ++.+.+.. +.+...+..+...+...++.++|...++..... ++.
T Consensus 502 A~~~~~~G~~~~A~~~-------------l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l 567 (1157)
T PRK11447 502 AQDLRQAGQRSQADAL-------------MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQEL 567 (1157)
T ss_pred HHHHHHcCCHHHHHHH-------------HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHH
Confidence 5666666665444433 33333322 223334444555667889999999999876321 111
Q ss_pred ------hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004273 510 ------PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583 (764)
Q Consensus 510 ------~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~ 583 (764)
..+..+...+...|+.++|+.+++. .+++...+..+...+.+.|++++|...|+...+.. +.+...+.
T Consensus 568 ~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~ 641 (1157)
T PRK11447 568 AQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARL 641 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 1123456678889999999999882 24556677778888999999999999999999864 33577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CC---CHhhHHHHHH
Q 004273 584 ALIKILLDYGDFDEALNLLDLVSLEGIPH-DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV--QP---DPSTCHFVFS 657 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p---~~~~~~~ll~ 657 (764)
.++..|...|++++|++.++..... .| +..++..+...+...|+.++|.++++++....- .| +...+..+..
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~ 719 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAAR 719 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHH
Confidence 9999999999999999999988753 44 456677788889999999999999999986422 12 1234555567
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 004273 658 GYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 658 ~~~~~g~~~~a~~~~~~~~~ 677 (764)
.+...|++++|++.++....
T Consensus 720 ~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 720 FEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 88999999999999988653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-21 Score=228.82 Aligned_cols=595 Identities=12% Similarity=0.039 Sum_probs=402.4
Q ss_pred hHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcc
Q 004273 9 RFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGAD 88 (764)
Q Consensus 9 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 88 (764)
.|...++.....++.+.|. ..+.++....|+. ...+..++..+...|+.++|.+.++++.+.. |+..
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~----------~~l~kl~~~~p~~-p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~ 96 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVR----------QSLYRLELIDPNN-PDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSN 96 (1157)
T ss_pred HHHHHHHHHHhhCChHHHH----------HHHHHHHccCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCCh
Confidence 3556666677777777777 4444456677775 4555666777889999999999999998876 3332
Q ss_pred hH-----------------HHHHHHhhCCCChhHHHHHHHHHHHcCccccHH-HHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004273 89 DF-----------------FHILNYCARSPDPLFVMETWRMMEEKEIGLNNK-CYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 89 ~~-----------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~ 150 (764)
.+ ..+.+.+...|++++|.+.|+.+.+.+ +|+.. ............|+.++|++.|+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~ 175 (1157)
T PRK11447 97 AYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNA 175 (1157)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Confidence 22 223346778899999999999988764 34432 121222223346899999999999976
Q ss_pred hcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--hhhH-----------------HHHHHHHHhccChhH
Q 004273 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN--EVTY-----------------TELLKLAVWQKNLSA 211 (764)
Q Consensus 151 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~-----------------~~ll~~~~~~~~~~~ 211 (764)
.+ +-+...+..+...+...|+.++|+..|+++........ ...| ...+..+-.....+.
T Consensus 176 ~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~ 253 (1157)
T PRK11447 176 DY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA 253 (1157)
T ss_pred hC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH
Confidence 54 33455777888889999999999999999865421100 0011 111111111112333
Q ss_pred HHHHHHHHHcc-CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchh
Q 004273 212 VHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 212 a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
+...+...... ..|.. ........+...|++++|+..|++..+ ..|+.
T Consensus 254 A~~~L~~~~~~~~dp~~-~~~~~G~~~~~~g~~~~A~~~l~~aL~--~~P~~---------------------------- 302 (1157)
T PRK11447 254 ARSQLAEQQKQLADPAF-RARAQGLAAVDSGQGGKAIPELQQAVR--ANPKD---------------------------- 302 (1157)
T ss_pred HHHHHHHHHHhccCcch-HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC----------------------------
Confidence 44444433322 12221 122345667788999999999999988 45544
Q ss_pred hhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc---cHH------------HHHHHHHhcCChhHHHHHHHHHH
Q 004273 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---TYD------------GFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~------------~li~~~~~~~~~~~a~~~~~~m~ 355 (764)
...+..+...+.+.|++++|+..|++..+.. |+.. .+. .....+.+.|++++|...|+++.
T Consensus 303 --~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 303 --SEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1478889999999999999999999988753 3321 111 12335668899999999999999
Q ss_pred HCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCC-C---
Q 004273 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP-D--- 428 (764)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p-~--- 428 (764)
+.... +...+..+...|...|++++|++.|++..... +...+..+...|. .+++++|+..++.+.. .... .
T Consensus 379 ~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 379 QVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred HhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 87644 55667788899999999999999999987653 4445666666664 4678999988876643 1100 0
Q ss_pred ----HHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcC
Q 004273 429 ----IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK 504 (764)
Q Consensus 429 ----~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 504 (764)
...+..+-..+...|++ ......+....+.. +-+...+..+...|.+.|++++|...|++..
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~-------------~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKW-------------AQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00111122222233333 33334444444332 2245667778889999999999999998752
Q ss_pred -CCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHccCChhHHHHHHHHHHHC
Q 004273 505 -TPL-GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA---------TYNIMIDCCSIIRCFKSASALVSMMVRD 573 (764)
Q Consensus 505 -~~~-~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 573 (764)
..| +...+..+...+...++.++|+..++.+......++.. .+..+...+...|+.++|..+++.
T Consensus 523 ~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---- 598 (1157)
T PRK11447 523 QQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---- 598 (1157)
T ss_pred HcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----
Confidence 223 34445555556677899999999998865433222221 123455678888999999999872
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hhH
Q 004273 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP-STC 652 (764)
Q Consensus 574 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~ 652 (764)
.+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...+...|+.++|++.++...+ ..|+. ...
T Consensus 599 -~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~ 674 (1157)
T PRK11447 599 -QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQ 674 (1157)
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHH
Confidence 34556677889999999999999999999998753 44678899999999999999999999998875 45543 445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh
Q 004273 653 HFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 653 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
..+..++...|++++|.++++.+...
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 55667889999999999999987654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-18 Score=195.16 Aligned_cols=602 Identities=10% Similarity=0.000 Sum_probs=398.2
Q ss_pred HhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHH
Q 004273 17 FCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNY 96 (764)
Q Consensus 17 ~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 96 (764)
+...|++++|+ ..|.+.+..+|+. ......+...|...|+.++|+..+++..+.+ |+...|..++..
T Consensus 54 ~~~~Gd~~~A~----------~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~ 120 (987)
T PRK09782 54 AQKNNDEATAI----------REFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAA 120 (987)
T ss_pred HHhCCCHHHHH----------HHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHH
Confidence 44459999999 5666668889997 6777888999999999999999999999875 444445444433
Q ss_pred hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH--------HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH-HHH
Q 004273 97 CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA--------LCKGGYLEEASNLIYFLGERYGIYPILPVYNSF-LGA 167 (764)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-i~~ 167 (764)
. ++++.|.++++++.+.. +-+..++..+... |.+.+...++++ .. .....|+..+.... ...
T Consensus 121 i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr-~~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 121 I---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DA-TFAASPEGKTLRTDLLQR 191 (987)
T ss_pred h---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----Hh-hhCCCCCcHHHHHHHHHH
Confidence 3 78889999999999985 4456666666665 666644444444 21 22233445545555 899
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-ccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH
Q 004273 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW-QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
|.+.|++++|++++..+.+.++. +..-...|-.+|.. .++ +.+..+++. ....++..+..+...|.+.|+.+.|
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~---~lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ---GIFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch---hcccCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999998644 34445566667776 366 777777553 3447889999999999999999999
Q ss_pred HHHHHHHHHhhhc-ccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004273 247 YETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 247 ~~~~~~m~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 325 (764)
.+++.++...-.. |.........+........-..++.. +..+-.....-.++..+.+.++++.+.++.. +.
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 339 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV-QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TL 339 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhh-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CC
Confidence 9999998763222 22211100011111110000000000 1111101223344778888899886665522 24
Q ss_pred CCcccHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CC----Ccch
Q 004273 326 PSSHTYDGFIRAIV--SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC-TN----PKPF 398 (764)
Q Consensus 326 p~~~t~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~ 398 (764)
|.... ..++... ..+...++.+.+..|.+.... +....-.+.....+.|+.++|.++|...... ++ ...-
T Consensus 340 ~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 416 (987)
T PRK09782 340 PANEM--LEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLM 416 (987)
T ss_pred CcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHH
Confidence 44442 2333333 346777888888888776433 5555556666678899999999999998763 22 2234
Q ss_pred HHHHHHHhcCCC---HHHHHHH----------------------HHHHhh--ccCCC---HHhHHHHHHHhcCCCCchhh
Q 004273 399 SAFLAACDTMDK---PERAIKI----------------------FAKMRQ--KLRPD---IRTYELLFSLFGNVNAPYEE 448 (764)
Q Consensus 399 ~~li~~~~~~g~---~~~a~~l----------------------~~~m~~--~~~p~---~~t~~~ll~~~~~~~~~~~~ 448 (764)
+-++..|.+.+. ..++..+ +..... +..|+ ...+..+-.++.. +.+.++
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 417 ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred HHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 466777777766 3344333 222222 22222 2222222222221 222111
Q ss_pred chhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCC-CCChhhHHHHHHHHHHcCChhH
Q 004273 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT-PLGTPTYNTVLHSLVEAQESHR 527 (764)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~ 527 (764)
. ..+...... .|+......+...+...|++++|...|++... +|+...+..+...+.+.|+.++
T Consensus 496 i------------~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~e 560 (987)
T PRK09782 496 L------------YAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAA 560 (987)
T ss_pred H------------HHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHH
Confidence 1 112222222 25544433455556789999999999987633 3445567777788899999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004273 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607 (764)
Q Consensus 528 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (764)
|...|++..+.+ +++...+..+...+...|++++|...+++..+. .|+...|..+..++.+.|+.++|+..+++...
T Consensus 561 A~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 561 RDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE 637 (987)
T ss_pred HHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998864 223333334444455669999999999999985 46788899999999999999999999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004273 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 608 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
.. +.+...++.+...+...|+.++|+..+++..+ ..|+ ...+..+-.++...|++++|+..+++...
T Consensus 638 l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 638 LE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 53 33566888888899999999999999999986 4564 45666677799999999999999997754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-17 Score=188.25 Aligned_cols=552 Identities=9% Similarity=-0.036 Sum_probs=368.1
Q ss_pred HHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHH
Q 004273 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEA 141 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 141 (764)
+...|++++|+..|++..+.. |-+...+..+..+|...|++++|+..+++..+.+ +-|...+..+ ..+ +++++|
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA 127 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKS 127 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhH
Confidence 445699999999999999887 4456778899999999999999999999999884 3344444444 333 899999
Q ss_pred HHHHHHHhhhcCCCCChhhhHHHHHH--------HhccCCHHHHHHHHHHHHhcCCCCChhhHHHH-HHHHHhccChhHH
Q 004273 142 SNLIYFLGERYGIYPILPVYNSFLGA--------CAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL-LKLAVWQKNLSAV 212 (764)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a 212 (764)
..+++++.+.++- +..++..+... |.+. +.|.+.++ .+...+.|+..+.... .+.|...++++.|
T Consensus 128 ~~~ye~l~~~~P~--n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 128 VTTVEELLAQQKA--CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred HHHHHHHHHhCCC--ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 9999999876533 33345444444 6655 55555555 4444445556555555 8899999999999
Q ss_pred HHHHHHHHccCCCCHHhHHHHHHHhhc-cCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhh
Q 004273 213 HEIWEDYIKHYSLSIFSLRKFVWSFTR-LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
.+++..+.+..+.+......|..+|.. .++ +.+..+++.. ++.+.
T Consensus 202 i~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~----------------------------- 247 (987)
T PRK09782 202 DTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDP----------------------------- 247 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCH-----------------------------
Confidence 999999999888888888888888888 466 7777775532 22222
Q ss_pred hHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCcccHHHHH------------------------------HHHHh
Q 004273 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ-PSSHTYDGFI------------------------------RAIVS 340 (764)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li------------------------------~~~~~ 340 (764)
..+..+...|.+.|+.++|.++++++...-.. |+..++--++ ..+.+
T Consensus 248 --~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (987)
T PRK09782 248 --QSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLK 325 (987)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHh
Confidence 48889999999999999999999998654322 4444443322 22223
Q ss_pred cCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHH--hcCCHHHHHHHHHHHhhC-C-CCcchHHHHHHHhcCCCHHHHHH
Q 004273 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS--KALELDLAEALLDQISRC-T-NPKPFSAFLAACDTMDKPERAIK 416 (764)
Q Consensus 341 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~ 416 (764)
.++++.+.++ + .+.|.... ..+.... ..+...++...+..|-.. + +...-..+..-..+.|+.++|.+
T Consensus 326 ~~~~~~~~~~----~--~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~ 397 (987)
T PRK09782 326 EGQYDAAQKL----L--ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAAD 397 (987)
T ss_pred ccHHHHHHHH----h--cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 3333322222 1 12222222 1222211 224455555555555544 2 44444444455678899999999
Q ss_pred HHHHHhh---ccCCCHHhHHHHHHHhcCCCCchhhchhhhh---hhhHH---------HHHHHHHHH-HHCCC-CC--cH
Q 004273 417 IFAKMRQ---KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ---VDSAK---------RINAIEMDM-ARNNI-QH--SH 477 (764)
Q Consensus 417 l~~~m~~---~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~---~~~~~---------~~~~~~~~~-~~~~~-~~--~~ 477 (764)
+|+.... .-.++.....-++..+...+.+....+...- ++... ......... ...+. ++ +.
T Consensus 398 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~ 477 (987)
T PRK09782 398 LLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDA 477 (987)
T ss_pred HHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCH
Confidence 9998876 2233333444566666665543222221110 11000 001111111 11122 23 56
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHhc-CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004273 478 ISMKNLLKALGAEGMIRELIQYFCDS-KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556 (764)
Q Consensus 478 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 556 (764)
..+..+...+.. ++.++|...+.+. ...|+......+...+...|++++|...|+++... .|+...+..+..++.+
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~ 554 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHH
Confidence 677777777776 7888899866553 34465443333445556899999999999998664 4555566677778889
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004273 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636 (764)
Q Consensus 557 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 636 (764)
.|+.++|...++...+.. +.+...+..+...+.+.|++++|...+++..+. .|+...|..+...+.+.|+.++|+..
T Consensus 555 ~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred CCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998864 223333334444555669999999999999854 67888999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHH-HHHHHHHhcCChHHHHHHHHHHHH
Q 004273 637 IEQMHQNKVQPDPSTCH-FVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 637 ~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+++..+ ..|+...+. .+-.++...|++++|++.++....
T Consensus 632 l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 632 LRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999996 567665544 444589999999999999997654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-16 Score=164.38 Aligned_cols=562 Identities=7% Similarity=-0.007 Sum_probs=268.4
Q ss_pred hcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc---cCCHHH
Q 004273 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK---GGYLEE 140 (764)
Q Consensus 64 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~ 140 (764)
..+++..|+.+|......+....+.....+..++.+.++.+.|+-.|++..+.+ +-++.++-.|...-.. ...+..
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHH
Confidence 345666666666664433321112222223334445566666666666666553 1222233222222111 123444
Q ss_pred HHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhccChhHHHHHHHH
Q 004273 141 ASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG--KNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 141 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
+..++...-..++ -|.+..+.|.+-|.-.|+++.++.+...+...... .-...|-.+-++|...|++++|...|-.
T Consensus 255 ~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 255 GVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 5555544433332 23335555666666666666666666555543211 1122355556666666666666666655
Q ss_pred HHccCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHH
Q 004273 219 YIKHYSLS-IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297 (764)
Q Consensus 219 ~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (764)
..+..+.+ ...+--|...|.+.|+.+.+...|+.+.+ ..|+.+ .+..
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k--~~p~~~------------------------------etm~ 380 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK--QLPNNY------------------------------ETMK 380 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH--hCcchH------------------------------HHHH
Confidence 55543333 44444555666666666666666666655 334331 2333
Q ss_pred HHHHHHHccC----CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH----HHCCCCCchhHHHHH
Q 004273 298 DVIHACGRTQ----NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM----QQNNLKPQDSTIATL 369 (764)
Q Consensus 298 ~li~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~l 369 (764)
.|...|...+ ..+.|..++....+.- ..|...|-.+-..+.. ++....+.+|... ...+-.+.....|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 3333333332 3345555555544432 2234444333333332 2322224444332 223333445555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC------CCc------chHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHH
Q 004273 370 SVECSKALELDLAEALLDQISRCT------NPK------PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFS 437 (764)
Q Consensus 370 i~~~~~~g~~~~A~~~~~~~~~~~------~~~------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~ 437 (764)
...+...|+++.|...|+.....- +.. +--.+...+-..++.+.|.+.|..+.. -.|.-++-..-+.
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk-ehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK-EHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HCchhHHHHHHhh
Confidence 666666666666666665554330 110 011122333334455555566555554 1122211111111
Q ss_pred HhcCC-CCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHh----cCCCCChhhH
Q 004273 438 LFGNV-NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD----SKTPLGTPTY 512 (764)
Q Consensus 438 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~ 512 (764)
+.++. +...++.. .+-.-+. ....++.+++-+-..|.+...+..|.+-|.. ....+|+.+.
T Consensus 538 ~ma~~k~~~~ea~~------------~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 538 CMARDKNNLYEASL------------LLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred HHHHhccCcHHHHH------------HHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 11100 00000000 0000011 1112222233333345555555555443322 2222333333
Q ss_pred HHHHHHHHH------------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 004273 513 NTVLHSLVE------------AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580 (764)
Q Consensus 513 ~~li~~~~~------------~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 580 (764)
-+|.+.|.+ .+..++|+++|.+..+.. +-|...-+.+--.++..|++.+|..+|.+..+... -...
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~d 681 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFED 681 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCc
Confidence 333333322 234567777777777654 33556666666677777888888888877776543 2334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH---
Q 004273 581 TYTALIKILLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF--- 656 (764)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll--- 656 (764)
+|-.+..+|..+|++-.|+++|+..... .-..++.+...|.+++.+.|.+.+|.+.+.........-....||..+
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~k 761 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLK 761 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHH
Confidence 4666777777888888888888776653 333456677777788888888877777776666432222223333322
Q ss_pred ---------------HHHHhcCChHHHHHHHHHHHHhh
Q 004273 657 ---------------SGYVNCGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 657 ---------------~~~~~~g~~~~a~~~~~~~~~~~ 679 (764)
......+..+.|.++|..|...+
T Consensus 762 kla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 762 KLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11222344566777777776544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-18 Score=166.90 Aligned_cols=439 Identities=13% Similarity=0.089 Sum_probs=240.5
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004273 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
+....-+.|++++|.+......+.+ +.+......+-..+.+..+.+...+.-....+.. +--..+|..+.+.+-..|+
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhch
Confidence 3444445666666666655544443 2222222222233334444443332222222221 2234466666666666666
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH-HHHHHHhccChhHHHHHH
Q 004273 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE-LLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~ 216 (764)
+++|+.+++.+.+.. +-.+..|..+..++...|+.+.|...|.+..+. .|+.....+ +-......|.+++|...|
T Consensus 132 ~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 666666666665432 123345666666666666666666666666653 444443332 222233455566666666
Q ss_pred HHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhH
Q 004273 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 217 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
.+.++..+.-.++|+.|...+-..|+...|+..|++..+ ++|+-. .+|
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~------------------------------dAY 255 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFL------------------------------DAY 255 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcch------------------------------HHH
Confidence 555555555555556666556566666666666665555 333321 255
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHh
Q 004273 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSK 375 (764)
Q Consensus 297 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 375 (764)
-.|-..|...+.+++|+..|.+.... .|+. ..+..+...|-..|.++.|...|++.++....
T Consensus 256 iNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~--------------- 318 (966)
T KOG4626|consen 256 INLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN--------------- 318 (966)
T ss_pred hhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC---------------
Confidence 55555555555555555555554432 2332 33444444444555555555555555544322
Q ss_pred cCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhh
Q 004273 376 ALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455 (764)
Q Consensus 376 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 455 (764)
-+..|+.|..++-..|++.+|.+.|.+... +.|+
T Consensus 319 ------------------F~~Ay~NlanALkd~G~V~ea~~cYnkaL~-l~p~--------------------------- 352 (966)
T KOG4626|consen 319 ------------------FPDAYNNLANALKDKGSVTEAVDCYNKALR-LCPN--------------------------- 352 (966)
T ss_pred ------------------chHHHhHHHHHHHhccchHHHHHHHHHHHH-hCCc---------------------------
Confidence 233445555555555555555555444433 1110
Q ss_pred hhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc-CCCCC-hhhHHHHHHHHHHcCChhHHHHHHH
Q 004273 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KTPLG-TPTYNTVLHSLVEAQESHRAMEIFK 533 (764)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~li~~~~~~~~~~~A~~l~~ 533 (764)
-....+.|...|...|.+++|..+|... ...|. ...+|.|...|-++|+.++|+..|+
T Consensus 353 --------------------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 353 --------------------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred --------------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 0111222333444444444444444332 12222 2356777788888888888888888
Q ss_pred HHHhCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004273 534 QMKTCGIPPNA-ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611 (764)
Q Consensus 534 ~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 611 (764)
+..+ +.|+. ..|+.+-+.|-..|+.+.|.+.+.+.+.. .|. ...++.|...|-.+|++.+|+.-++... .++
T Consensus 413 ealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klk 486 (966)
T KOG4626|consen 413 EALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLK 486 (966)
T ss_pred HHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccC
Confidence 8776 56664 57788888888888888888888888774 344 3567778888888999999998888877 456
Q ss_pred CCH-HHHHHHHHH
Q 004273 612 HDV-LLYNTILKK 623 (764)
Q Consensus 612 p~~-~~~~~li~~ 623 (764)
||. ..|..++..
T Consensus 487 PDfpdA~cNllh~ 499 (966)
T KOG4626|consen 487 PDFPDAYCNLLHC 499 (966)
T ss_pred CCCchhhhHHHHH
Confidence 763 345555443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-18 Score=170.98 Aligned_cols=362 Identities=11% Similarity=0.030 Sum_probs=275.1
Q ss_pred HHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcch
Q 004273 10 FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD 89 (764)
Q Consensus 10 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 89 (764)
...++.-..+.|++++|. ..++. +...+|......+ .+-..+.+..+.+.....-....+.. +--.++
T Consensus 51 ~l~lah~~yq~gd~~~a~-~h~nm---------v~~~d~t~~~~ll-ll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ 118 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAE-KHCNM---------VGQEDPTNTERLL-LLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEA 118 (966)
T ss_pred HHHHHHHHHhccCHHHHH-HHHhH---------hhccCCCccccee-eehhhhhcccchhhhhhhhhhhhhcc-chHHHH
Confidence 344555566777777777 33332 1222333222222 12222444455555554433333332 345678
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH-HHHH
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF-LGAC 168 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-i~~~ 168 (764)
|..+...+...|+...|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.+..+ +.|+.+...+- -..+
T Consensus 119 ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 119 YSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHH
Confidence 9999999999999999999999999985 44677999999999999999999999988764 35665544443 3334
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHH
Q 004273 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
-..|++++|...|.+..+..+ --.+.|+.|-..+-.+|+...|.+.|++.++-.+.-..+|-.|..+|...+.++.|..
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 457999999999999887632 2356788898899999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-
Q 004273 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS- 327 (764)
Q Consensus 249 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~- 327 (764)
.+.+... .+|+. +..|..+...|..+|+.+.|+..|++..+. .|+
T Consensus 274 ~Y~rAl~--lrpn~------------------------------A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F 319 (966)
T KOG4626|consen 274 CYLRALN--LRPNH------------------------------AVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNF 319 (966)
T ss_pred HHHHHHh--cCCcc------------------------------hhhccceEEEEeccccHHHHHHHHHHHHhc--CCCc
Confidence 9999887 66665 357888888899999999999999999875 566
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHH
Q 004273 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAAC 405 (764)
Q Consensus 328 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~ 405 (764)
...|+.|..++-..|++.+|.+.|.+....... -....+.|...|...|.+++|..+|.....-. -...+|.|...|
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIY 398 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHH
Confidence 468999999999999999999999999887654 44566778888888888888888887766542 344567777777
Q ss_pred hcCCCHHHHHHHHHHHhh
Q 004273 406 DTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 406 ~~~g~~~~a~~l~~~m~~ 423 (764)
-++|++++|+.-|++...
T Consensus 399 kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HhcccHHHHHHHHHHHHh
Confidence 888888888777776654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=181.01 Aligned_cols=296 Identities=13% Similarity=0.043 Sum_probs=177.1
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC--ChhhhHHHHHHHhccCCHHH
Q 004273 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP--ILPVYNSFLGACAKLHSMVH 176 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 176 (764)
..|+++.|.+.|+++.+.+ +.+..++..+...+...|++++|..+++.+.......+ +...+..+...|.+.|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 4455555555555555543 22334555555555555555555555555543211100 01234555555555555555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCC-----HHhHHHHHHHhhccCCHHHHHHHHH
Q 004273 177 ANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS-----IFSLRKFVWSFTRLRDLKSAYETLQ 251 (764)
Q Consensus 177 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~ 251 (764)
|+.+|+.+.+.. .++..++..+...+...|++++|.+.++.+.+..+.+ ...+..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555555431 2234455555555555555555555555555432211 1234455566677777777777777
Q ss_pred HHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccH
Q 004273 252 HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331 (764)
Q Consensus 252 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 331 (764)
++.+. .|+. ...+..+...+.+.|++++|.++|+++.+.+......++
T Consensus 205 ~al~~--~p~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 205 KALAA--DPQC------------------------------VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred HHHhH--CcCC------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 77662 2332 135666777777777777777777777764322223456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCcchHHHHHHHhc---
Q 004273 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC-TNPKPFSAFLAACDT--- 407 (764)
Q Consensus 332 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~--- 407 (764)
+.+..++...|++++|...++.+.+.. |+...+..++..+.+.|++++|..+++++... ++...++.++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccC
Confidence 677777777788888888777777653 44455577777788888888888888766554 255567777777664
Q ss_pred CCCHHHHHHHHHHHhh-ccCCCHH
Q 004273 408 MDKPERAIKIFAKMRQ-KLRPDIR 430 (764)
Q Consensus 408 ~g~~~~a~~l~~~m~~-~~~p~~~ 430 (764)
.|+.++++.++++|.+ +++|++.
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCC
Confidence 5688999999999998 7776665
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-18 Score=178.54 Aligned_cols=296 Identities=10% Similarity=0.014 Sum_probs=247.6
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc---HHHHHHHHHHHHcc
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN---NKCYLLMMQALCKG 135 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 135 (764)
...+...|++++|+..|+++.+.+ +.+...+..+...+...|+++.|..+++.+.+.+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344678899999999999999876 44556788899999999999999999999988642221 35678899999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhccChhH
Q 004273 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE----VTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~ 211 (764)
|++++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++
T Consensus 121 g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 99999999999997532 456778999999999999999999999999887544332 234556677889999999
Q ss_pred HHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhh
Q 004273 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
|.+.++++.+..+.+...+..+...+.+.|++++|.++|+++.+. .|+..
T Consensus 199 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~---------------------------- 248 (389)
T PRK11788 199 ARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYL---------------------------- 248 (389)
T ss_pred HHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhH----------------------------
Confidence 999999999877777888999999999999999999999999873 23210
Q ss_pred hHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHH
Q 004273 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 371 (764)
..+++.++.+|...|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++.
T Consensus 249 -~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 249 -SEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 147889999999999999999999999886 577777788899999999999999999999876 578888888888
Q ss_pred HHHh---cCCHHHHHHHHHHHhhC
Q 004273 372 ECSK---ALELDLAEALLDQISRC 392 (764)
Q Consensus 372 ~~~~---~g~~~~A~~~~~~~~~~ 392 (764)
.+.. .|+.+++..+++.+...
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHH
Confidence 7775 55899999999988754
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-15 Score=139.27 Aligned_cols=474 Identities=13% Similarity=0.120 Sum_probs=315.4
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--ccChhHHH-HHHHHHHccCCCCHHhHHHHH
Q 004273 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW--QKNLSAVH-EIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~-~~~~~~~~~~~~~~~~~~~li 234 (764)
+.+=|.|+..- ..|.+..+.-+|+.|++.|+..+...--.|+...+- ..++.-|+ +-|-.|.+....+..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 34556666544 368888999999999999888777766666654332 22222221 12222222222333333
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHH
Q 004273 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 314 (764)
+.|++.+ -+|+..++ .+ .+|..+|.++++--+.+.|.+
T Consensus 191 ----K~G~vAd--L~~E~~PK----T~--------------------------------et~s~mI~Gl~K~~~~ERA~~ 228 (625)
T KOG4422|consen 191 ----KSGAVAD--LLFETLPK----TD--------------------------------ETVSIMIAGLCKFSSLERARE 228 (625)
T ss_pred ----ccccHHH--HHHhhcCC----Cc--------------------------------hhHHHHHHHHHHHHhHHHHHH
Confidence 4455533 33333322 12 499999999999999999999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 004273 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394 (764)
Q Consensus 315 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 394 (764)
++++-.....+.+..+||.+|.+-.- ....++..+|....+.||..|+|+++.+..+.|+++.|.+
T Consensus 229 L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~---------- 294 (625)
T KOG4422|consen 229 LYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK---------- 294 (625)
T ss_pred HHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH----------
Confidence 99999988888899999999987643 3348899999999999999999999999988888887753
Q ss_pred CcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCC
Q 004273 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473 (764)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (764)
.|++++.+|++ |+.|...+|..+|..+++-+++.+ .....+.+|.+.+....+
T Consensus 295 ------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k--------~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 295 ------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK--------VASSWINDIQNSLTGKTF 348 (625)
T ss_pred ------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh--------hhHHHHHHHHHhhccCcc
Confidence 45677788999 999999999999998888776533 233455667777766666
Q ss_pred CC----cHHHHHHHHHHHhccCcHHHHHHHHHhcC-------CCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 004273 474 QH----SHISMKNLLKALGAEGMIRELIQYFCDSK-------TPLG---TPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539 (764)
Q Consensus 474 ~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~---~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g 539 (764)
+| +...|.+-++.|.+..+.+.|.++..-.. ..|+ ..-|..+....++....+..+.+|+.|.-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 55 34556667788888888888887743221 1222 2245667788888899999999999999888
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---H
Q 004273 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL---L 616 (764)
Q Consensus 540 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~ 616 (764)
+-|+..+...++++....+.++-..++|..++..|...+...- ++++..|......|+.. -
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L~~~k~hp~tp~r~Q 492 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLLARDKLHPLTPEREQ 492 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHHhcCCCCCCChHHHH
Confidence 8899999999999999999999999999999887644332222 22333333333334322 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHhhhccc-cCchHhhHHHHH
Q 004273 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFE 695 (764)
Q Consensus 617 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 695 (764)
+..+..-|+ ..-.+..+..-.+|.+..+ .....+...-.+.+.|+.++|.+++..+.+++-+.+ ......+...++
T Consensus 493 l~~~~ak~a-ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 493 LQVAFAKCA-ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHH-HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 333333222 2223334444556665444 444556677788899999999999998865544333 344444555666
Q ss_pred HhhhhccHHHHHHHHHHhhhcchhhHHHHhhhhhhhhhccCCccccc
Q 004273 696 DLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWS 742 (764)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~l~~~~~~~~~~~~~~~~ 742 (764)
+.....++..+...++.+.. ..++...+|.+=. ..|+.|.-.
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~--~n~~~~E~La~RI---~e~f~iNqe 611 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASA--FNLPICEGLAQRI---MEDFAINQE 611 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHH--cCchhhhHHHHHH---HHhcCcCHH
Confidence 66666666666666666533 3444445554310 445555433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-14 Score=147.71 Aligned_cols=550 Identities=11% Similarity=0.044 Sum_probs=378.7
Q ss_pred HHhcCC--cchHHHHHHHhhhccCCCCcchHHHHHHHhh--CCCChhHHHHHHHHHHHcC--ccccHHHHHHHHHHHHcc
Q 004273 62 ALCRGE--RSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFVMETWRMMEEKE--IGLNNKCYLLMMQALCKG 135 (764)
Q Consensus 62 ~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~ 135 (764)
|...+. .+.|...|....... ++ .....+.++|. +.+++..|+.+|...+... ..||+.+ .+...+.+.
T Consensus 138 ~l~~~~~~~~~A~a~F~~Vl~~s-p~--Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl 212 (1018)
T KOG2002|consen 138 LLLEGDKSMDDADAQFHFVLKQS-PD--NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKL 212 (1018)
T ss_pred hhhcCCccHHHHHHHHHHHHhhC-Cc--chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhc
Confidence 444454 489999999988765 22 34445666666 5689999999999977643 4556644 334556799
Q ss_pred CCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHhcc---CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhH
Q 004273 136 GYLEEASNLIYFLGERYGIYPI-LPVYNSFLGACAKL---HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
|+.+.|+..|.+..+-+ |+ +.++-.|.-.-... ..+..+..++...-... .-+++..+.|-+.|...|+++.
T Consensus 213 ~~~~~a~~a~~ralqLd---p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~ 288 (1018)
T KOG2002|consen 213 GMSEKALLAFERALQLD---PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYER 288 (1018)
T ss_pred cchhhHHHHHHHHHhcC---hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHH
Confidence 99999999999997653 43 22222222222222 44556666666654433 2377788889999999999999
Q ss_pred HHHHHHHHHccCC---CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccc
Q 004273 212 VHEIWEDYIKHYS---LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 212 a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
+..+...+.+... .-...|..+.++|...|++++|...|-+..+ ..++.++
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~------------------------ 342 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFV------------------------ 342 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCcc------------------------
Confidence 9999999987532 3344688999999999999999999998887 4444321
Q ss_pred hhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCch
Q 004273 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDR----GLRNGMEVLKIMQQNNLKPQD 363 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~ 363 (764)
..+--+...+.+.|+++.+...|+...+. .||. .|...|-..|...+ ..+.|..++....+.-+. |.
T Consensus 343 -----l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~ 414 (1018)
T KOG2002|consen 343 -----LPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DS 414 (1018)
T ss_pred -----ccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cH
Confidence 24446788899999999999999999886 4554 56666666666554 456677777776665433 56
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHh----hCC---CCcchHHHHHHHhcCCCHHHHHHHHHHHhhc----cCCCHH--
Q 004273 364 STIATLSVECSKALELDLAEALLDQIS----RCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK----LRPDIR-- 430 (764)
Q Consensus 364 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~p~~~-- 430 (764)
..|-.+...|-.. +...++.++.... ..+ .+...|.+..-+...|.+++|...|...... ..+|..
T Consensus 415 ~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~ 493 (1018)
T KOG2002|consen 415 EAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKS 493 (1018)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccccc
Confidence 6666666655544 4444455555443 222 6677899999999999999999999987652 334442
Q ss_pred ---hHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhcc-------CcHHHHHHHH
Q 004273 431 ---TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE-------GMIRELIQYF 500 (764)
Q Consensus 431 ---t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------g~~~~a~~~~ 500 (764)
|...-+..|. +.+.........+..+.+.. ...|++|.+. +...+|...+
T Consensus 494 ~~lt~~YNlarl~------------E~l~~~~~A~e~Yk~Ilkeh--------p~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 494 TNLTLKYNLARLL------------EELHDTEVAEEMYKSILKEH--------PGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred chhHHHHHHHHHH------------HhhhhhhHHHHHHHHHHHHC--------chhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 1111122111 12222222333333333321 1244555444 5667888888
Q ss_pred HhcC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcc------------CChhHHHH
Q 004273 501 CDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC-GIPPNAATYNIMIDCCSII------------RCFKSASA 565 (764)
Q Consensus 501 ~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~------------~~~~~a~~ 565 (764)
.+.. ...+...++-+.+.+.+...+..|.+-|...... ...+|..+...|-+.|... +..++|++
T Consensus 554 k~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq 633 (1018)
T KOG2002|consen 554 KDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ 633 (1018)
T ss_pred HHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH
Confidence 7652 3445667777777888888888888877766554 2236777777777655432 34667899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004273 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645 (764)
Q Consensus 566 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 645 (764)
+|.+..+.. +-|...-|-+.-.++..|++.+|.++|.+..+... -+..+|-.+...|...|++-.|+++|+.....-.
T Consensus 634 ~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 634 LYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998888764 34677778888899999999999999999987652 3456899999999999999999999999887533
Q ss_pred -CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004273 646 -QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 646 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
.-+..+..+|-.++.+.|.+.+|.+.+..-..
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34666777888899999999999988775543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-15 Score=171.05 Aligned_cols=427 Identities=9% Similarity=-0.028 Sum_probs=254.8
Q ss_pred CCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHH
Q 004273 84 SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163 (764)
Q Consensus 84 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 163 (764)
+.++....-.+......|+.+.|+++|....... +.+...+..+...+.+.|++++|..+|++..+.. +.+...+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 3444444445555556666666666666665522 3344456666666666677777776666655432 223344556
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCH
Q 004273 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
+...+...|++++|+..++...+..+ .+.. +..+..++...|+.++|...++++.+..|.+...+..+..++...+..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence 66666666777777777666665421 1333 555555666667777777777776666666666666666666677777
Q ss_pred HHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHH-----HccCCH---HHHHHH
Q 004273 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC-----GRTQNS---GLAEQL 315 (764)
Q Consensus 244 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~---~~a~~~ 315 (764)
+.|++.++.+.+ .|+.. ..........+++.. ...+++ ++|++.
T Consensus 167 e~Al~~l~~~~~---~p~~~-------------------------~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 167 APALGAIDDANL---TPAEK-------------------------RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred HHHHHHHHhCCC---CHHHH-------------------------HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 777776665443 11100 000000111222222 222334 778889
Q ss_pred HHHHHHC-CCCCCccc-HH----HHHHHHHhcCChhHHHHHHHHHHHCCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004273 316 MLQMQSL-GLQPSSHT-YD----GFIRAIVSDRGLRNGMEVLKIMQQNNLK-PQDSTIATLSVECSKALELDLAEALLDQ 388 (764)
Q Consensus 316 ~~~m~~~-g~~p~~~t-~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 388 (764)
++.+.+. ...|+... +. ..+.++...|++++|...|+.+.+.+.. |+. ....+...|...|++++|+..|+.
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9988864 22333321 11 1134556779999999999999987643 332 223357789999999999999999
Q ss_pred HhhCC--C----CcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHH
Q 004273 389 ISRCT--N----PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462 (764)
Q Consensus 389 ~~~~~--~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (764)
+.... + ...+..+..++...|++++|..+++.+....+++...+..
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~---------------------------- 349 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS---------------------------- 349 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC----------------------------
Confidence 87653 1 1234556678899999999999999988722222111100
Q ss_pred HHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 004273 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG---TPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539 (764)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g 539 (764)
....|+ ...+..+...+...|+.++|+++++++....
T Consensus 350 ----------------------------------------~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 350 ----------------------------------------PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred ----------------------------------------CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 001122 1233445566667777777777777776652
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004273 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617 (764)
Q Consensus 540 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 617 (764)
+-+...+..+...+...|++++|++.+++..+.. |+ ...+..+...+.+.|++++|+.+++++.+. .|+....
T Consensus 390 -P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~ 463 (765)
T PRK10049 390 -PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGV 463 (765)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 3345566666667777777777777777777643 43 445555566677777777777777777753 4554433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-16 Score=171.67 Aligned_cols=326 Identities=12% Similarity=-0.010 Sum_probs=243.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004273 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 57 ~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 136 (764)
..+..+.+.|+++.|+.+++...... +-+...+..++.++...|+++.|.+.++++.+.. +.+...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 34677888899999999988888765 3334445555566667889999999999988874 456667888888888999
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHH
Q 004273 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
++++|...+++..+.. +.+...+..+...+...|++++|...++.+....+.+ ...+.. +..+...|++++|...+
T Consensus 125 ~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 125 QYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHDLA 200 (656)
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHHHH
Confidence 9999999998886542 3345577888888888999999999888877654332 223322 33477889999999988
Q ss_pred HHHHccCC-CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhh
Q 004273 217 EDYIKHYS-LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 217 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
+.+.+..+ ++...+..+..++...|++++|...|+++.+ ..|+.. ..
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~------------------------------~~ 248 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGA------------------------------AL 248 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCH------------------------------HH
Confidence 88877543 3344455566778888999999999998887 345441 47
Q ss_pred HHHHHHHHHccCCHHH----HHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHH
Q 004273 296 FSDVIHACGRTQNSGL----AEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370 (764)
Q Consensus 296 ~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 370 (764)
+..+...+...|++++ |...|++..+. .|+ ...+..+...+...|++++|...++...+.... +...+..+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 7788888888898875 78888888875 344 456777888888899999999999988886544 455666788
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004273 371 VECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
..|.+.|++++|...|+.+.... +...+..+..++...|++++|...|++..+
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888999999999998887653 222233455678888999999999988876
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.2e-15 Score=163.08 Aligned_cols=423 Identities=12% Similarity=-0.036 Sum_probs=240.2
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc
Q 004273 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
+......+.+.|++++|+..|+..... .|+...|..+..+|...|++++|.+.+....+..+.+..++..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 334555566667777777777666553 455566666666666677777777777776666666666677777777777
Q ss_pred CCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004273 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 241 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 320 (764)
|++++|+..|..+.... +... .....++..+.. ..+........
T Consensus 208 g~~~eA~~~~~~~~~~~--~~~~------------------------------~~~~~~~~~~l~----~~a~~~~~~~l 251 (615)
T TIGR00990 208 GKYADALLDLTASCIID--GFRN------------------------------EQSAQAVERLLK----KFAESKAKEIL 251 (615)
T ss_pred CCHHHHHHHHHHHHHhC--CCcc------------------------------HHHHHHHHHHHH----HHHHHHHHHHH
Confidence 77777776665554311 1100 000111111111 11222222222
Q ss_pred HCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCch-hHHHHHHHH---HHhcCCHHHHHHHHHHHhhCC---
Q 004273 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD-STIATLSVE---CSKALELDLAEALLDQISRCT--- 393 (764)
Q Consensus 321 ~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~--- 393 (764)
+.. .++...+..+ ..+...........-+....+. .++. ..+..+... ....+++++|...|+.....+
T Consensus 252 ~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~ 327 (615)
T TIGR00990 252 ETK-PENLPSVTFV-GNYLQSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG 327 (615)
T ss_pred hcC-CCCCCCHHHH-HHHHHHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC
Confidence 211 1122222222 1121111111111111111110 0000 000111000 122356667777776665431
Q ss_pred --CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHC
Q 004273 394 --NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471 (764)
Q Consensus 394 --~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (764)
....|+.+...+...|++++|+..|++..+ ..|+.
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~-l~P~~------------------------------------------ 364 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIE-LDPRV------------------------------------------ 364 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCc------------------------------------------
Confidence 334466666667777777777777776655 22321
Q ss_pred CCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc-C-CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 004273 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDS-K-TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549 (764)
Q Consensus 472 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ 549 (764)
...|..+...+...|++++|...|+.. . .+.+...|..+...+...|++++|+..|++..+.. +.+...+..
T Consensus 365 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 365 -----TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 112223344555666777777766553 1 23345677788888888899999999998888763 234566667
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----H-HHHHHHHH
Q 004273 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV-----L-LYNTILKK 623 (764)
Q Consensus 550 ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~-~~~~li~~ 623 (764)
+...+.+.|++++|...|+...+.. +.+...|+.+..++...|++++|.+.|++.....-..+. . .++..+..
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 7778888899999999998887752 335677888888899999999999999988754211111 1 12222223
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004273 624 ACEKGRIDVIEFIIEQMHQNKVQPDP-STCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 624 ~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+...|++++|.+++++.... .|+. ..+..+...+...|++++|++.+++...
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34468899999999988763 4544 3566677789999999999998887643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.9e-15 Score=162.36 Aligned_cols=155 Identities=15% Similarity=0.061 Sum_probs=98.8
Q ss_pred HHhccCcHHHHHHHHHhc-CC-CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHH
Q 004273 486 ALGAEGMIRELIQYFCDS-KT-PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563 (764)
Q Consensus 486 ~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 563 (764)
.+...|++++|...|++. .. +.+...|..+...+.+.|++++|+..|++..+.. +-+...++.+...+...|++++|
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHH
Confidence 344444444444444432 11 2234455566667777788888888888777642 23456777777777888888888
Q ss_pred HHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004273 564 SALVSMMVRDGFYPQTM------TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637 (764)
Q Consensus 564 ~~~~~~~~~~g~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 637 (764)
...|+...+.....+.. .++.....+...|++++|.+++++..... +.+...+..+...+...|++++|.+.|
T Consensus 487 ~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 487 IEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred HHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 88888877643211111 11222223344688889999888877543 234456888888888999999999988
Q ss_pred HHHHH
Q 004273 638 EQMHQ 642 (764)
Q Consensus 638 ~~m~~ 642 (764)
++..+
T Consensus 566 e~A~~ 570 (615)
T TIGR00990 566 ERAAE 570 (615)
T ss_pred HHHHH
Confidence 88875
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-14 Score=136.16 Aligned_cols=437 Identities=13% Similarity=0.143 Sum_probs=242.4
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHH--hhCCCChhHH-HHHHHHHHHcCccccHHHHHHHHHHHHcc
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNY--CARSPDPLFV-METWRMMEEKEIGLNNKCYLLMMQALCKG 135 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 135 (764)
+......|....+.-+|+.|.+.|++.++..-..|++. |-++.++.-| .+-|-.|...| ..+..+| +.
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~ 192 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KS 192 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------cc
Confidence 33456778888888888888888877777665555542 2233344322 22333343333 2233333 44
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHH
Q 004273 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
|++.+ -+|+..+ .+..+|.+||.++|+--..+.|.++|++......+.+..+||.+|.+-.-..+
T Consensus 193 G~vAd--L~~E~~P------KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~------- 257 (625)
T KOG4422|consen 193 GAVAD--LLFETLP------KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG------- 257 (625)
T ss_pred ccHHH--HHHhhcC------CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-------
Confidence 55444 3444332 24458888888888888888888888888887778888888888775432211
Q ss_pred HHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhh
Q 004273 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
.++..+|....+.|+. .|
T Consensus 258 -------------------------------K~Lv~EMisqkm~Pnl-------------------------------~T 275 (625)
T KOG4422|consen 258 -------------------------------KKLVAEMISQKMTPNL-------------------------------FT 275 (625)
T ss_pred -------------------------------HHHHHHHHHhhcCCch-------------------------------Hh
Confidence 4455555555555555 45
Q ss_pred HHHHHHHHHccCCHH----HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhH-HHHHHHHHHH----CCCCC----c
Q 004273 296 FSDVIHACGRTQNSG----LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN-GMEVLKIMQQ----NNLKP----Q 362 (764)
Q Consensus 296 ~~~li~~~~~~g~~~----~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~-a~~~~~~m~~----~~~~~----~ 362 (764)
||+++++..+.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..++| |
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 666666666655543 344556666666666666666666666666665533 3333333322 11222 2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----------CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHh
Q 004273 363 DSTIATLSVECSKALELDLAEALLDQISRCT----------NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRT 431 (764)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t 431 (764)
...+...+..|.+..+.+.|.++-.-+.... ...-|..+....|+....+..+..|+.|.- -+-|+..+
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 2234455556666666666666655444331 112244566666777777777777777776 56677777
Q ss_pred HHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhh
Q 004273 432 YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT 511 (764)
Q Consensus 432 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 511 (764)
...++++....+.+ +-+..+..+++..|.
T Consensus 436 m~~~lrA~~v~~~~-------------e~ipRiw~D~~~~gh-------------------------------------- 464 (625)
T KOG4422|consen 436 MIHLLRALDVANRL-------------EVIPRIWKDSKEYGH-------------------------------------- 464 (625)
T ss_pred HHHHHHHHhhcCcc-------------hhHHHHHHHHHHhhh--------------------------------------
Confidence 76666655444332 111112222222111
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHccCChhHHHHH-HHHHHHCCCCCCHHHHHHHHH
Q 004273 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA---TYNIMIDCCSIIRCFKSASAL-VSMMVRDGFYPQTMTYTALIK 587 (764)
Q Consensus 512 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~-~~~~~~~g~~p~~~~~~~li~ 587 (764)
.-+..--++++..|......|+.. -+.....-|+ -++.++.+. -.++.+. .......+.+.-
T Consensus 465 ----------t~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~ 530 (625)
T KOG4422|consen 465 ----------TFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQ--DWPATSLNCIAI 530 (625)
T ss_pred ----------hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhc--cCChhHHHHHHH
Confidence 111122233444444443344322 2222222221 122222222 2334333 344556677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004273 588 ILLDYGDFDEALNLLDLVSLEGI-P---HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~-~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 646 (764)
.+.|.|+.++|.+++..+.+++- - |......-+++...+.++...|..+++-|...++.
T Consensus 531 Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 531 LLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 88888888888888888865432 2 33333345666667777888888888888765543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-15 Score=165.90 Aligned_cols=294 Identities=10% Similarity=-0.024 Sum_probs=172.7
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
+......|++++|+..|+++.... |.+...+..+...+.+.|+++.|++.++++.+.. +.+...+..+...+...|++
T Consensus 83 ~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~ 160 (656)
T PRK15174 83 VISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKE 160 (656)
T ss_pred hhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCh
Confidence 344555677777777777766654 3344455555666666677777777777666653 33455666666666677777
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHH
Q 004273 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
++|...++.+....+ .+...+..+ ..+.+.|++++|...++.+......++...+..+...+...|++++|.+.++.
T Consensus 161 ~eA~~~~~~~~~~~P--~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 161 LQAISLARTQAQEVP--PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777766665543321 112222222 23556677777777666665543333333444444556666777777777776
Q ss_pred HHccCCCCHHhHHHHHHHhhccCCHHH----HHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHh
Q 004273 219 YIKHYSLSIFSLRKFVWSFTRLRDLKS----AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294 (764)
Q Consensus 219 ~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (764)
+.+..+.+...+..+..++...|++++ |...|++..+ ..|+. ..
T Consensus 238 al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~------------------------------~~ 285 (656)
T PRK15174 238 ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDN------------------------------VR 285 (656)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCC------------------------------HH
Confidence 666656666666666666666666664 5666666665 34443 13
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHH
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 373 (764)
.+..+...+.+.|++++|...+++..+.. |+ ...+..+..++...|++++|...|+.+.+.+.. +...+..+..++
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al 362 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAAL 362 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 66666666666777777777776666542 33 334445556666667777777777666654322 112233344556
Q ss_pred HhcCCHHHHHHHHHHHhhC
Q 004273 374 SKALELDLAEALLDQISRC 392 (764)
Q Consensus 374 ~~~g~~~~A~~~~~~~~~~ 392 (764)
...|+.++|...|+.....
T Consensus 363 ~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 363 LQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHCCCHHHHHHHHHHHHHh
Confidence 6667777777776666544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-14 Score=161.05 Aligned_cols=189 Identities=10% Similarity=0.006 Sum_probs=140.8
Q ss_pred HhccCcHHHHHHHHHhcCCCCC-hh--hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCCh
Q 004273 487 LGAEGMIRELIQYFCDSKTPLG-TP--TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP---NAATYNIMIDCCSIIRCF 560 (764)
Q Consensus 487 ~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~ 560 (764)
+...|++++|...|+.+....+ .. .-..+...|...|++++|+..|+++.+..... .......+..++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 3456888999999988643321 11 11224668889999999999999987653111 134456666778899999
Q ss_pred hHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004273 561 KSASALVSMMVRDGF-----------YPQ---TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626 (764)
Q Consensus 561 ~~a~~~~~~~~~~g~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 626 (764)
++|..+++.+.+... .|+ ...+..+...+...|+.++|+++++++.... +.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 999999999887521 123 2345567788889999999999999998642 4467788899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004273 627 KGRIDVIEFIIEQMHQNKVQPDPS-TCHFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 627 ~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
.|+.++|++.+++..+ ..|+.. .+......+...|++++|..+++.+..+
T Consensus 406 ~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 406 RGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred cCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999985 567754 4444555888899999999999988764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-13 Score=150.97 Aligned_cols=452 Identities=10% Similarity=0.016 Sum_probs=305.4
Q ss_pred HHHHhcCCcchHHHHHHHhhhccCCCCc--chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004273 60 VDALCRGERSRASHLLLNLGHAHHSLGA--DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 60 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
....+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.+.|+..+++.... .+.+......+...|...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 34789999999999999998876 443 234 8888888889999999999998822 12233344444668889999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 004273 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
+++|+++|+++.+.++- +...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|.+.++
T Consensus 118 yd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 118 WDQALALWQSSLKKDPT--NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred HHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 99999999999876533 3456678888999999999999999999886 5666666444444444566656999999
Q ss_pred HHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHH
Q 004273 218 DYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297 (764)
Q Consensus 218 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (764)
++.+..|.+...+..+..+..+.|-...|.++...-+ +.+.... .+.+......
T Consensus 194 kll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~--------------------~~~l~~~~~a 247 (822)
T PRK14574 194 EAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEH--------------------YRQLERDAAA 247 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHH--------------------HHHHHHHHHH
Confidence 9999999999999999999999999999987766533 2211100 0000000011
Q ss_pred HHHHHH-----HccCCH---HHHHHHHHHHHHC-CCCCCccc-----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCch
Q 004273 298 DVIHAC-----GRTQNS---GLAEQLMLQMQSL-GLQPSSHT-----YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363 (764)
Q Consensus 298 ~li~~~-----~~~g~~---~~a~~~~~~m~~~-g~~p~~~t-----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 363 (764)
.+++.- ....++ +.|+.-++.+... +-.|.... ..--+-++...++..++.+.|+.+...+.+...
T Consensus 248 ~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~ 327 (822)
T PRK14574 248 EQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD 327 (822)
T ss_pred HHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence 111110 011223 4555555555542 22243222 223456778899999999999999998876556
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCC-HHhHHH
Q 004273 364 STIATLSVECSKALELDLAEALLDQISRCT--------NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPD-IRTYEL 434 (764)
Q Consensus 364 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~-~~t~~~ 434 (764)
.+-.++.++|...+++++|+.++..+.... +......|..+|...+++++|..+++++.+ ..|- ...|
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~-~~p~~~~~~-- 404 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE-QTPYQVGVY-- 404 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCcEEecc--
Confidence 788899999999999999999999986532 122246788999999999999999999986 2231 0000
Q ss_pred HHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCCh-hhHH
Q 004273 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT-PTYN 513 (764)
Q Consensus 435 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~ 513 (764)
.... ..+.||- ..+.
T Consensus 405 -----~~~~-----------------------------------------------------------~~pn~d~~~~~~ 420 (822)
T PRK14574 405 -----GLPG-----------------------------------------------------------KEPNDDWIEGQT 420 (822)
T ss_pred -----CCCC-----------------------------------------------------------CCCCccHHHHHH
Confidence 0000 0012221 1333
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004273 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593 (764)
Q Consensus 514 ~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 593 (764)
.++..+...|+..+|++.++++.... +-|......+-..+...|.+.+|+..++...... +-+..+....+..+...|
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhh
Confidence 44566677778888888888776653 4466667777777777778888888776655542 223455566667777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH
Q 004273 594 DFDEALNLLDLVSLEGIPHDVLL 616 (764)
Q Consensus 594 ~~~~A~~~~~~m~~~~~~p~~~~ 616 (764)
++++|..+.+.+.+. .|+...
T Consensus 499 e~~~A~~~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 499 EWHQMELLTDDVISR--SPEDIP 519 (822)
T ss_pred hHHHHHHHHHHHHhh--CCCchh
Confidence 888887777776643 454443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-13 Score=148.25 Aligned_cols=436 Identities=10% Similarity=0.041 Sum_probs=262.8
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCCh--hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH---HHHHHHh
Q 004273 131 ALCKGGYLEEASNLIYFLGERYGIYPIL--PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE---LLKLAVW 205 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~~~ 205 (764)
...+.|+++.|+..|++..+.+ |+. ..+ .++..+...|+.++|+..+++.. .|+...+.. +...+..
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHH
Confidence 4567788888888888776543 443 133 67777777788888888887776 233222222 2335566
Q ss_pred ccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCc
Q 004273 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
.|++++|.++++.+.+..+.++..+..++..+...++.++|++.++++.+ ..|+.
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~----------------------- 169 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE--RDPTV----------------------- 169 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcch-----------------------
Confidence 67777777777777776666666666666677777777777777777665 23332
Q ss_pred ccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchh
Q 004273 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 364 (764)
..+-.++..+...++..+|++.++++.+.. |+ ...+..++.++.+.|-...|.++..+-... +.+ .
T Consensus 170 --------~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~--~ 236 (822)
T PRK14574 170 --------QNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSA--E 236 (822)
T ss_pred --------HHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCH--H
Confidence 233333333333444545777777776653 43 334455566666666666666544432110 111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCH---HHHHHHHHHHhh--ccCCCHHh-HHHHHHH
Q 004273 365 TIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMRQ--KLRPDIRT-YELLFSL 438 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~l~~~m~~--~~~p~~~t-~~~ll~~ 438 (764)
....| +.+.|-+..+..... . -....++ +.|+.-++.+.. +-.|.... |..
T Consensus 237 ~~~~l--------~~~~~a~~vr~a~~~--~---------~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~---- 293 (822)
T PRK14574 237 HYRQL--------ERDAAAEQVRMAVLP--T---------RSETERFDIADKALADYQNLLTRWGKDPEAQADYQR---- 293 (822)
T ss_pred HHHHH--------HHHHHHHHHhhcccc--c---------ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHH----
Confidence 11000 001111111110000 0 0011122 333333444333 21122111 100
Q ss_pred hcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCC-Chh--hHHHH
Q 004273 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL-GTP--TYNTV 515 (764)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~l 515 (764)
...-.+-++.+.+++.++++.++.+.... .+. +--.+
T Consensus 294 ----------------------------------------~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 294 ----------------------------------------ARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ----------------------------------------HHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 00113345677888889998888875433 223 44567
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC-----------CCCH
Q 004273 516 LHSLVEAQESHRAMEIFKQMKTCG-----IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-----------YPQT 579 (764)
Q Consensus 516 i~~~~~~~~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----------~p~~ 579 (764)
..+|...+++++|+.+|++..... ..++......|.-++...+++++|..+++.+.+... .|+.
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 888999999999999999986643 122344457788899999999999999999987311 1221
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-hHHHH
Q 004273 580 ---MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS-TCHFV 655 (764)
Q Consensus 580 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l 655 (764)
..+..++..+.-.|+..+|++.++++.... +-|......+...+...|++.+|++.++.... +.|+.. +....
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~ 490 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQ 490 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHH
Confidence 223456777888999999999999997543 45778888999999999999999999977764 567654 44445
Q ss_pred HHHHHhcCChHHHHHHHHHHHHh
Q 004273 656 FSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 656 l~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
..++...|+|.+|..+.+.+..+
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh
Confidence 56778889999999988877654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-14 Score=147.54 Aligned_cols=556 Identities=12% Similarity=0.048 Sum_probs=285.6
Q ss_pred HHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHh
Q 004273 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
..++..+...|+.||..+|.++|.-||..|+++.|- +|..|.- ...+.+...++.++.++.+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC--------
Confidence 455666666666677667777777777777766666 6666642 345555666666666666666665554
Q ss_pred cCCCCChhhHHHHHHHHHhccChhH---HHHHHHHHHccC------CC-------------CHHhHHHHHHHhhccCCHH
Q 004273 187 RMVGKNEVTYTELLKLAVWQKNLSA---VHEIWEDYIKHY------SL-------------SIFSLRKFVWSFTRLRDLK 244 (764)
Q Consensus 187 ~g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~------~~-------------~~~~~~~li~~~~~~g~~~ 244 (764)
.|...||..|+.+|...||+.. ..+.+..+...+ .+ ....-.+++....-.|.++
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 4566666666666666666543 222122221110 00 0111112222333344444
Q ss_pred HHHHHHHHHH------------Hhhhcccchhcccc--cccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHH
Q 004273 245 SAYETLQHMV------------ALAMMGKLYINRTS--EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310 (764)
Q Consensus 245 ~A~~~~~~m~------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 310 (764)
.+++++..++ +..+.++.++.+.+ |..+++ ... ..+|.+++.+-..+|+.+
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~--------------s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APT--------------SETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCC--------------hHHHHHHHHHHHhcCchh
Confidence 4444443322 22233333333222 222222 111 269999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004273 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390 (764)
Q Consensus 311 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 390 (764)
.|..++.+|.+.|++.+.+-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+-.+..+|....+....+.-.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~h 298 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAH 298 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhh
Confidence 999999999999999999998888866 88999999999999999999999999977777766554322211110000
Q ss_pred hCCCCcchHHHHHHHhcCCCHHH-----HHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCchhhchhhhhh---------
Q 004273 391 RCTNPKPFSAFLAACDTMDKPER-----AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV--------- 455 (764)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~-----a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--------- 455 (764)
.- ....+..+..+.....+.+. ....+.+-.- |+.-....|.......- .|.-.+...+...+
T Consensus 299 g~-tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qgk~e~veqlvg~l~npt~r~s~ 376 (1088)
T KOG4318|consen 299 GF-TAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QGKGEEVEQLVGQLLNPTLRDSG 376 (1088)
T ss_pred hh-hHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cCCCchHHHHHhhhcCCccccCc
Confidence 00 11111111111111111110 0111111111 11111111111111100 11110000000000
Q ss_pred ---h-hHHHHHHHHHHHHHCCCCCcHHHHH--HHHHHHhccCcHHHHHHH------------HHhc---------CC---
Q 004273 456 ---D-SAKRINAIEMDMARNNIQHSHISMK--NLLKALGAEGMIRELIQY------------FCDS---------KT--- 505 (764)
Q Consensus 456 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~------------~~~~---------~~--- 505 (764)
+ .......++....... ....++ ..++-........+..+. +... ..
T Consensus 377 ~~V~a~~~~lrqyFrr~e~~~---~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~ 453 (1088)
T KOG4318|consen 377 QNVDAFGALLRQYFRRIERHI---CSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPL 453 (1088)
T ss_pred chHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchh
Confidence 0 0000111111111100 000111 000000001111111111 1100 00
Q ss_pred --CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC--CCCCCHHH
Q 004273 506 --PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD--GFYPQTMT 581 (764)
Q Consensus 506 --~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~p~~~~ 581 (764)
.+-...-+.++..++..-+..+++..-+.....-+ | ..|..||+-++.....+.|..+.++.... .+..|..-
T Consensus 454 ~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~ 530 (1088)
T KOG4318|consen 454 IAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPL 530 (1088)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHh
Confidence 00011234555566666566666544333332211 1 56888888888888888888888887643 34556667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 004273 582 YTALIKILLDYGDFDEALNLLDLVSLEG-IPHD-VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 659 (764)
+..+.+.+.+.+...++..+++++.+.- ..|+ ..++--++++....|+.+...++++-+...|+.-+ .-++...
T Consensus 531 m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vh 606 (1088)
T KOG4318|consen 531 MTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVH 606 (1088)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEE
Confidence 8888888888888888888888887631 2232 34555667777788888888888888887776552 2345566
Q ss_pred HhcCChHHHHHHHHHHHHhhhccccCchHhhHHHHHHhhhhccHHHHHHHH
Q 004273 660 VNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRIL 710 (764)
Q Consensus 660 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (764)
.+.++...|+++.+....+ . ...+.....+-.++..+..+....++
T Consensus 607 Lrkdd~s~a~ea~e~~~qk-y----k~~P~~~e~lcrlv~ke~td~~qk~m 652 (1088)
T KOG4318|consen 607 LRKDDQSAAQEAPEPEEQK-Y----KPYPKDLEGLCRLVYKETTDSPQKTM 652 (1088)
T ss_pred eeccchhhhhhcchHHHHH-h----cCChHHHHHHHHHHHhhccccHHHHH
Confidence 6778888888877755432 1 13333344444445433333333333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-11 Score=127.67 Aligned_cols=592 Identities=10% Similarity=0.027 Sum_probs=358.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 131 (764)
...+......+-..|+.++|.+++.++++.. +.....|..|...|-+.|+...+...+-.....+ +.|...|..+...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3444444444555699999999999999887 5677889999999999999999988876665554 5577899999999
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH----HHHHHHhcc
Q 004273 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE----LLKLAVWQK 207 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----ll~~~~~~~ 207 (764)
..+.|.++.|.-.|.+..+.. +++...+-.=...|-+.|+...|..-|.++.+..+..|..-+.. ++..+...+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998654 34544444456678889999999999999998754333333333 455666778
Q ss_pred ChhHHHHHHHHHHc--cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCc
Q 004273 208 NLSAVHEIWEDYIK--HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 208 ~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
+-+.|.+.++.... ....+...++.++..|.+...++.|......+......+|+.-. ...+.+...+.+.-.
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~-----~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW-----DTDERRREEPNALCE 369 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh-----hhhhhcccccccccc
Confidence 78999998888876 35666778889999999999999999988888764444433110 000000000000000
Q ss_pred cc---chhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004273 286 LP---VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP--SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 286 ~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 360 (764)
.+ ..++ .. --++-++......+....+..-..+..+.| +...|.-+..++...|.+.+|..+|..+...-..
T Consensus 370 ~~~~~s~~l--~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 370 VGKELSYDL--RV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred CCCCCCccc--hh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 00 0011 01 123344445555555555556666665333 4456888899999999999999999999987666
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHH
Q 004273 361 PQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSL 438 (764)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~ 438 (764)
-+..+|-.+..+|...|..+.|...+..+.... +...--+|-..+.+.|+.++|.+.+..|.. ||..+- .+
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~---~D~~~~----e~ 519 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN---PDGRNA----EA 519 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC---CCccch----hh
Confidence 677889999999999999999999999987762 444455677788999999999999998753 332210 00
Q ss_pred hcCCCCchhhchhhhhhhhHHHHHHHHHHHH-HCCCC-CcHHHHHHHHHHHhccCcH----HHHHHHHHhc-CCCCChhh
Q 004273 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMA-RNNIQ-HSHISMKNLLKALGAEGMI----RELIQYFCDS-KTPLGTPT 511 (764)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~-~~~~~~~~ 511 (764)
|+.. . ..++..-...+. +.|-. --..+-..|++.+.+...+ .++...-... ........
T Consensus 520 ~a~~----~----------e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~ 585 (895)
T KOG2076|consen 520 CAWE----P----------ERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSEL 585 (895)
T ss_pred cccc----H----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchh
Confidence 0000 0 000000000000 00000 0011112233322221111 0000000000 01122223
Q ss_pred HHHHHHHHHHcCChhHHHH------HHHHHHhCCCCCCH--HHHHHHHHHHHccCChhHHHHHHHHHHHCCC--CCCH--
Q 004273 512 YNTVLHSLVEAQESHRAME------IFKQMKTCGIPPNA--ATYNIMIDCCSIIRCFKSASALVSMMVRDGF--YPQT-- 579 (764)
Q Consensus 512 ~~~li~~~~~~~~~~~A~~------l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~p~~-- 579 (764)
.-.++.+-.+.++...... .+.--...|+.-+. ..+.-++.++++.+++++|+.+...+.+... .++.
T Consensus 586 ~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~ 665 (895)
T KOG2076|consen 586 LKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIR 665 (895)
T ss_pred HHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHH
Confidence 3334444444443222111 11111222333232 2456677788899999999999888876522 2222
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 004273 580 -MTYTALIKILLDYGDFDEALNLLDLVSLE-GIPHD---VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654 (764)
Q Consensus 580 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 654 (764)
..-...+.+.+..+++..|.+.++.|... +...+ ...|+...+...+.++-.--.+++..+.. ..|+...+-.
T Consensus 666 k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~ 743 (895)
T KOG2076|consen 666 KELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLA 743 (895)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCccee
Confidence 22345666777889999999999988753 22222 23566566666666654444444444432 2333322222
Q ss_pred HH--HHHHhcCChHHHHHHHHHHHHh
Q 004273 655 VF--SGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 655 ll--~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
++ ..+...+.+..|+..+-.....
T Consensus 744 ~i~gh~~~~~~s~~~Al~~y~ra~~~ 769 (895)
T KOG2076|consen 744 LIYGHNLFVNASFKHALQEYMRAFRQ 769 (895)
T ss_pred eeechhHhhccchHHHHHHHHHHHHh
Confidence 22 2456678888888766655443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-12 Score=125.73 Aligned_cols=184 Identities=16% Similarity=0.119 Sum_probs=145.2
Q ss_pred HhccCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHH
Q 004273 487 LGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564 (764)
Q Consensus 487 ~~~~g~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 564 (764)
+-+.|++++|++.|-+.. ...+....-.+.+.|-...+..+|++++.+.... ++.|+.....|...|-+.|+-.+|.
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhh
Confidence 456678888888876541 1234555666777888889999999999776554 5567788899999999999999998
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHC
Q 004273 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC-EKGRIDVIEFIIEQMHQN 643 (764)
Q Consensus 565 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~ 643 (764)
+.+-+--+. ++-+..+...|..-|....-+++|+.+|++.. -++|+..-|..+|..|. +.|++.+|.++++...+
T Consensus 613 q~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr- 688 (840)
T KOG2003|consen 613 QCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR- 688 (840)
T ss_pred hhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-
Confidence 887554443 56678888888888999999999999999875 56999999999988775 68999999999999886
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004273 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676 (764)
Q Consensus 644 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 676 (764)
.++-|..+...|++.+...|. .++.++-+++.
T Consensus 689 kfpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 689 KFPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred hCccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 577788898899998888885 34555555554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-10 Score=121.65 Aligned_cols=616 Identities=10% Similarity=-0.028 Sum_probs=367.5
Q ss_pred hhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCc
Q 004273 8 TRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGA 87 (764)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 87 (764)
-.+...+..+.-.|++++|. .++.++ ++.+|.. ...|..+...|-..|+.+++...|-..-..+ +-|.
T Consensus 140 ~~ll~eAN~lfarg~~eeA~-~i~~Ev---------Ikqdp~~-~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~ 207 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAE-EILMEV---------IKQDPRN-PIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDY 207 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHH-HHHHHH---------HHhCccc-hhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCCh
Confidence 34555666666679999999 444433 4555553 3445556677889999999998876665544 4556
Q ss_pred chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhh----HH
Q 004273 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVY----NS 163 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~ 163 (764)
..|..+.....+.|+++.|.-.|.+.++.. +++...+-.-...|-+.|+...|.+-|.++.+..+ +.|..-. -.
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRR 285 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHH
Confidence 778888888888999999999999999986 45544444557788999999999999999876543 2222223 33
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc---------------------
Q 004273 164 FLGACAKLHSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK--------------------- 221 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--------------------- 221 (764)
.+..+...++.+.|++.++..... +-..+...++.+...+.+...++.+.........
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 455667778889999999888763 2233445667777778888888887776655544
Q ss_pred -------cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHh
Q 004273 222 -------HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294 (764)
Q Consensus 222 -------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (764)
...++..+ -.++-++......+....+..-..+....|...+ .
T Consensus 366 ~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~-----------------------------d 415 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDV-----------------------------D 415 (895)
T ss_pred ccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhH-----------------------------H
Confidence 11222223 1233334444455555555555565555444421 4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHH
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 374 (764)
.|.-+..+|...|++..|+.+|..+...-.--+...|--+.+++-..|..+.|.+.|......... +...--+|...+-
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~ 494 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQ 494 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHH
Confidence 788899999999999999999999988755556667888889999999999999999999886433 4444557788899
Q ss_pred hcCCHHHHHHHHHHHhhCC----CCc-------chHHHHHHHhcCCCHHHHHHHHHHHhh-c-----cCCCH--------
Q 004273 375 KALELDLAEALLDQISRCT----NPK-------PFSAFLAACDTMDKPERAIKIFAKMRQ-K-----LRPDI-------- 429 (764)
Q Consensus 375 ~~g~~~~A~~~~~~~~~~~----~~~-------~~~~li~~~~~~g~~~~a~~l~~~m~~-~-----~~p~~-------- 429 (764)
+.|+.++|.+.+..+...+ ... .--.....+.+.|+.++-+..-..|.. . +-|+.
T Consensus 495 ~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~ 574 (895)
T KOG2076|consen 495 QLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAI 574 (895)
T ss_pred hcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhh
Confidence 9999999999999865433 111 223345667788888886666555543 1 11211
Q ss_pred ---------HhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcH--HHHHHHHHHHhccCcHHHHHH
Q 004273 430 ---------RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH--ISMKNLLKALGAEGMIRELIQ 498 (764)
Q Consensus 430 ---------~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~ 498 (764)
.+...++.+..+.++....... +.. ..........|+..+. ..+..++..+++.+.+++|..
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~---l~d----~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~ 647 (895)
T KOG2076|consen 575 AGTTSKRYSELLKQIIRAREKATDDNVMEKA---LSD----GTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALS 647 (895)
T ss_pred ccccccccchhHHHHHHHHhccCchHHhhhc---ccc----hhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 1111111111111111000000 000 0111112223333332 234568889999999999999
Q ss_pred HHHhcCC-----CCCh---hhHHHHHHHHHHcCChhHHHHHHHHHHhC-CC--CCCH-HHHHHHHHHHHccCChhHHHHH
Q 004273 499 YFCDSKT-----PLGT---PTYNTVLHSLVEAQESHRAMEIFKQMKTC-GI--PPNA-ATYNIMIDCCSIIRCFKSASAL 566 (764)
Q Consensus 499 ~~~~~~~-----~~~~---~~~~~li~~~~~~~~~~~A~~l~~~m~~~-g~--~p~~-~t~~~ll~~~~~~~~~~~a~~~ 566 (764)
+...+.. .++. ..-...+.+....+++..|...++.|... +. .|.. ..|+..++...+.++-.--.++
T Consensus 648 vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~ 727 (895)
T KOG2076|consen 648 VVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRL 727 (895)
T ss_pred HHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765422 1111 13345667778889999999999998765 11 1222 2344455555544433222233
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH----------HcCCHHHHHH
Q 004273 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK-AC----------EKGRIDVIEF 635 (764)
Q Consensus 567 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~----------~~g~~~~a~~ 635 (764)
+..+......-++..+......+..++.+..|+..+-+.... .||....+.++.. +. ++-..-.+..
T Consensus 728 ~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~a 805 (895)
T KOG2076|consen 728 IMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFA 805 (895)
T ss_pred HHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 322222111111111112222344566777777766555432 4553333332211 11 1111234455
Q ss_pred HHHHHHHCCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004273 636 IIEQMHQNKVQ-PDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 636 ~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
++.+..+.... --...++-+-++|-..|-..-|..++++...
T Consensus 806 fL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 806 FLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 55555442211 1233455566677777777777777776543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-09 Score=109.32 Aligned_cols=523 Identities=14% Similarity=0.056 Sum_probs=323.3
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHH
Q 004273 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLD 182 (764)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 182 (764)
...=.+++++.++. ++.++..|...+ .....+.|+-++.+..+- ++.+. -|.-+|++..-++.|.++++
T Consensus 362 ~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvec--cp~s~----dLwlAlarLetYenAkkvLN 430 (913)
T KOG0495|consen 362 TKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVEC--CPQSM----DLWLALARLETYENAKKVLN 430 (913)
T ss_pred HHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHh--ccchH----HHHHHHHHHHHHHHHHHHHH
Confidence 33344555555554 344555554433 234445566666666542 12222 23344555666667777777
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc-----cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 004273 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-----HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA 257 (764)
Q Consensus 183 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 257 (764)
..++. ++.+...|.+....=-..|+.+....+.+.-.. |...+...|..=...|-..|..-.+..+.......|
T Consensus 431 kaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigig 509 (913)
T KOG0495|consen 431 KAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIG 509 (913)
T ss_pred HHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhc
Confidence 66664 444555665555555566666666666655543 355555566666666666666666666666666666
Q ss_pred hcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHH
Q 004273 258 MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIR 336 (764)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~ 336 (764)
+...+. ..+|+.-...|.+.+.++-|..+|....+- -|. ...|..+..
T Consensus 510 vEeed~-----------------------------~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~ 558 (913)
T KOG0495|consen 510 VEEEDR-----------------------------KSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAM 558 (913)
T ss_pred cccchh-----------------------------HhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHH
Confidence 554432 136777777777777777777777666653 233 333444444
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHH
Q 004273 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERA 414 (764)
Q Consensus 337 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a 414 (764)
.--..|..++...+|++....-.+ ....+-.....+...|++..|..++.+.-+.. +...|-+-+..-..+..++.|
T Consensus 559 ~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 559 FEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHH
Confidence 444556666666777776665443 34445555556666677777777776665542 445566666666777777777
Q ss_pred HHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHH
Q 004273 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494 (764)
Q Consensus 415 ~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 494 (764)
..+|.+... ..|+...|.--++.-- .++..+....+.+...+. ++.-...|-.+-..+-+.++++
T Consensus 638 R~llakar~-~sgTeRv~mKs~~~er-------------~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 638 RDLLAKARS-ISGTERVWMKSANLER-------------YLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHHHHHHhc-cCCcchhhHHHhHHHH-------------HhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHH
Confidence 777766665 2334333322211111 111222222222222221 1122334455666677778888
Q ss_pred HHHHHHHhc-CCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 004273 495 ELIQYFCDS-KTPLG-TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572 (764)
Q Consensus 495 ~a~~~~~~~-~~~~~-~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 572 (764)
.|.+.+... ..-|+ +..|-.+...=-+.|.+-+|..++++.+-.+ +-|...|...|..=.+.|+.+.|..+..+..+
T Consensus 703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888887654 23344 5578888777778889999999999988776 34778888999999999999999999877776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-h
Q 004273 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS-T 651 (764)
Q Consensus 573 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~ 651 (764)
. ++.+...|.--|....+.++-....+.+++ +.-|+...-.+...+.....++.|.+.|++.+. ..||.. +
T Consensus 782 e-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~ 853 (913)
T KOG0495|consen 782 E-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDA 853 (913)
T ss_pred h-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchH
Confidence 5 455677888888888887776666655554 356778888888888888999999999999985 556654 6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhHHHH
Q 004273 652 CHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDF 694 (764)
Q Consensus 652 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (764)
|..+...+.+.|.-+.-.+++.......-. -+..|..+..-+
T Consensus 854 wa~fykfel~hG~eed~kev~~~c~~~EP~-hG~~W~avSK~i 895 (913)
T KOG0495|consen 854 WAWFYKFELRHGTEEDQKEVLKKCETAEPT-HGELWQAVSKDI 895 (913)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhccCCC-CCcHHHHHhhhH
Confidence 666778889999888888888865543211 124565554444
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-11 Score=128.10 Aligned_cols=562 Identities=14% Similarity=0.066 Sum_probs=294.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 131 (764)
..++.++|..|+..|+.+.|- +|.-|.-...+.....|+.++.+....++.+.+. .|...+|+.|..+
T Consensus 25 RvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~a 92 (1088)
T KOG4318|consen 25 RVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKA 92 (1088)
T ss_pred hhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHH
Confidence 366777777777777777777 7777776666666677777777777777766554 5677788888888
Q ss_pred HHccCCHHH---HHHHHHHHhhh---cCCC-CChhh-------------hHHHHHHHhccCCHHHHHHHHHHHHhcC-CC
Q 004273 132 LCKGGYLEE---ASNLIYFLGER---YGIY-PILPV-------------YNSFLGACAKLHSMVHANLCLDLMDSRM-VG 190 (764)
Q Consensus 132 ~~~~g~~~~---A~~~~~~~~~~---~~~~-~~~~~-------------~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 190 (764)
|...||+.. ..+.+..+.+. .|+- |.... -...+.-..-.|-++.+++++..++... ..
T Consensus 93 yr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~ 172 (1088)
T KOG4318|consen 93 YRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNA 172 (1088)
T ss_pred HHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccc
Confidence 888887543 33322222111 1110 00000 1112222333344444455444433221 11
Q ss_pred CChhhHHHHHHHHHhccChhHHHHHHHHHHcc-CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccc
Q 004273 191 KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSE 269 (764)
Q Consensus 191 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 269 (764)
|..+ .|+-+.. +....+++.....+. ..|++.+|..++..-...|+.+.|..++..|.+.|+.-+.
T Consensus 173 p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~------- 239 (1088)
T KOG4318|consen 173 PFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA------- 239 (1088)
T ss_pred hHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc-------
Confidence 1111 1222222 223444555555543 3699999999999999999999999999999998877655
Q ss_pred ccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHH
Q 004273 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349 (764)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 349 (764)
+-|-.|+-+ .++...+..+++.|.+.|+.|+..|+..-+..+.+.|....+..
T Consensus 240 ------------------------HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e 292 (1088)
T KOG4318|consen 240 ------------------------HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE 292 (1088)
T ss_pred ------------------------ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc
Confidence 223344433 78888899999999999999999999887777766443211110
Q ss_pred -----------HHHHHHH-------------------------CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004273 350 -----------VLKIMQQ-------------------------NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393 (764)
Q Consensus 350 -----------~~~~m~~-------------------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 393 (764)
++..|.. .|+.....++. +..-....|.-+..+++-..+....
T Consensus 293 ~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt 371 (1088)
T KOG4318|consen 293 GSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPT 371 (1088)
T ss_pred ccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCc
Confidence 1111110 12221111111 1111222455555555555443321
Q ss_pred ------CCcchHHHHHHHhcCCC----------------------HHHHHHHHHHHhhccCCCHHhHH-------HHHHH
Q 004273 394 ------NPKPFSAFLAACDTMDK----------------------PERAIKIFAKMRQKLRPDIRTYE-------LLFSL 438 (764)
Q Consensus 394 ------~~~~~~~li~~~~~~g~----------------------~~~a~~l~~~m~~~~~p~~~t~~-------~ll~~ 438 (764)
++..|..++.-|.+.-+ ..+..++.. ...|+..--. -+++.
T Consensus 372 ~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~----~lrkns~lr~lv~Lss~Eler~ 447 (1088)
T KOG4318|consen 372 LRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLE----NLRKNSFLRQLVGLSSTELERS 447 (1088)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHH----HhCcchHHHHHhhhhHHHHhcc
Confidence 33334444444433211 111111111 1122221110 00000
Q ss_pred hcCCCC-chhhchhhh----hhhhHHHHHHHHH--HHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCC-----
Q 004273 439 FGNVNA-PYEEGNMFS----QVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP----- 506 (764)
Q Consensus 439 ~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 506 (764)
.-.... .....+..+ .+-.......+.+ .+.+.-. -...|..||+-+.....++.|..+.++...+
T Consensus 448 he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l--f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~ 525 (1088)
T KOG4318|consen 448 HEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL--FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIH 525 (1088)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhh
Confidence 000000 000000000 0000000000110 0111111 1145778899999999999999988776322
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCC---------
Q 004273 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI-PPN-AATYNIMIDCCSIIRCFKSASALVSMMVRDGF--------- 575 (764)
Q Consensus 507 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~-~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--------- 575 (764)
.|..-+..+.+.+.+.+...++..++++|.+.-. .|+ ..++-.+++..+..|+.+.-.++++-+...|+
T Consensus 526 Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~v 605 (1088)
T KOG4318|consen 526 LDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMV 605 (1088)
T ss_pred cccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEE
Confidence 3445788889999999999999999999987422 222 34566677777777887777777766665543
Q ss_pred ---------------------CCCHHHHHHHHHH---------------------HHhcCCHHHHHHHHHHH---HHCC-
Q 004273 576 ---------------------YPQTMTYTALIKI---------------------LLDYGDFDEALNLLDLV---SLEG- 609 (764)
Q Consensus 576 ---------------------~p~~~~~~~li~~---------------------~~~~g~~~~A~~~~~~m---~~~~- 609 (764)
+|.+.....+.+. |.++|+..+|.++.+.= .+.+
T Consensus 606 hLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~R 685 (1088)
T KOG4318|consen 606 HLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGR 685 (1088)
T ss_pred EeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCC
Confidence 2222222222222 33333333333333210 0000
Q ss_pred --------CCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 004273 610 --------IPH---------DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672 (764)
Q Consensus 610 --------~~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 672 (764)
+.| +.....-|+..|.+.|++++|..+|.++. +.|+..+.-.|.+.+.+...-...-+++
T Consensus 686 Dr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q 762 (1088)
T KOG4318|consen 686 DRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQ 762 (1088)
T ss_pred ccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHH
Confidence 000 00112236667788888888888888876 7777777777777777665544444444
Q ss_pred HHH
Q 004273 673 QVL 675 (764)
Q Consensus 673 ~~~ 675 (764)
.+.
T Consensus 763 ~e~ 765 (1088)
T KOG4318|consen 763 AET 765 (1088)
T ss_pred HHH
Confidence 443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-10 Score=112.61 Aligned_cols=511 Identities=10% Similarity=0.024 Sum_probs=370.1
Q ss_pred CcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHH
Q 004273 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIY 146 (764)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 146 (764)
+...=.+++++..+.- |+... |-++.....+.+.|+-++++..+. ++.+...| .+|++..-++.|..+++
T Consensus 361 ~~~~K~RVlRKALe~i--P~sv~---LWKaAVelE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLN 430 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEHI--PRSVR---LWKAAVELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLN 430 (913)
T ss_pred HHHHHHHHHHHHHHhC--CchHH---HHHHHHhccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHH
Confidence 3344456677766653 44332 334444556777788888888876 34444443 45666777899999999
Q ss_pred HHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHH----HHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc-
Q 004273 147 FLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL----MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK- 221 (764)
Q Consensus 147 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~- 221 (764)
...+ .++-+..+|-+-...--++|+.+...+++.+ +...|+..+..-|-.=...|-..|..-.+..+......
T Consensus 431 kaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi 508 (913)
T KOG0495|consen 431 KARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI 508 (913)
T ss_pred HHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh
Confidence 8865 4555666776666666778899988888765 44568888888887777778888888888887777765
Q ss_pred c--CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHH
Q 004273 222 H--YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299 (764)
Q Consensus 222 ~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 299 (764)
+ ...-..+|+.-...|.+.+.++-|..+|....+ +.|.. ...|...
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alq--vfp~k------------------------------~slWlra 556 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ--VFPCK------------------------------KSLWLRA 556 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh--hccch------------------------------hHHHHHH
Confidence 2 233456888888889999999999999999887 55554 2578777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCccc-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCC
Q 004273 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHT-YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378 (764)
Q Consensus 300 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 378 (764)
+..--..|..+....+|++.... .|-... |-....-.-..|+...|..++....+.+.. +...+-+-+..-....+
T Consensus 557 ~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e 633 (913)
T KOG0495|consen 557 AMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDE 633 (913)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhcccc
Confidence 77777788999999999998876 344443 433445566789999999999998887665 67778888888899999
Q ss_pred HHHHHHHHHHHhhCC-CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhh
Q 004273 379 LDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457 (764)
Q Consensus 379 ~~~A~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 457 (764)
++.|..+|.+..... +...|.--+..---.+..++|++++++..+ .-|+..-+-.++ |.+++++..
T Consensus 634 ~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk-~fp~f~Kl~lml------------GQi~e~~~~ 700 (913)
T KOG0495|consen 634 LERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK-SFPDFHKLWLML------------GQIEEQMEN 700 (913)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH-hCCchHHHHHHH------------hHHHHHHHH
Confidence 999999999887664 777777777777777889999999987776 456655554443 233333333
Q ss_pred HHHHHHHHHHHHHCC---CCCcHHHHHHHHHHHhccCcHHHHHHHHHhc--CCCCChhhHHHHHHHHHHcCChhHHHHHH
Q 004273 458 AKRINAIEMDMARNN---IQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIF 532 (764)
Q Consensus 458 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~ 532 (764)
.+..... ...| ++.....|-.|...--+.|.+..|..+|+.. ..+.+...|-..|..=.+.|+.+.|..+.
T Consensus 701 ie~aR~a----Y~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 701 IEMAREA----YLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHH----HHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 3333222 2223 3344666777888788889999999999875 45667889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004273 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612 (764)
Q Consensus 533 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 612 (764)
.+..+. ++-+...|.--|....+.++-.... +.+.+ +.-|+...-.+...|-....++.|.+.|.+....+ +-
T Consensus 777 akALQe-cp~sg~LWaEaI~le~~~~rkTks~---DALkk--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d 849 (913)
T KOG0495|consen 777 AKALQE-CPSSGLLWAEAIWLEPRPQRKTKSI---DALKK--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PD 849 (913)
T ss_pred HHHHHh-CCccchhHHHHHHhccCcccchHHH---HHHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cc
Confidence 888775 4555666777777666666643333 33333 45577777788888888899999999999998543 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh
Q 004273 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 613 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
+-.+|.-+...+.++|.-+.-.+++..... ..|...
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG 885 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHG 885 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCC
Confidence 346888899999999999998999998874 456544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-08 Score=98.24 Aligned_cols=454 Identities=10% Similarity=0.088 Sum_probs=261.7
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hhhHHHHHHHhccCCHHHH
Q 004273 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL-PVYNSFLGACAKLHSMVHA 177 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A 177 (764)
..++...|+.+|+..+.-+ ..+...|-..+..=.++..+..|..+|++.... -|.+ ..|-.-+..--..|++..|
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHH
Confidence 3455666777777766654 345556666666666666777777777766432 1222 2333333333445677777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 004273 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA 257 (764)
Q Consensus 178 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 257 (764)
.++|+.-.+ ..|+...|.+.|+.=.+.+.++.|..+|+..+-. .|++..|-.....-.++|....|..+|+...+.
T Consensus 161 RqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~-HP~v~~wikyarFE~k~g~~~~aR~VyerAie~- 236 (677)
T KOG1915|consen 161 RQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV-HPKVSNWIKYARFEEKHGNVALARSVYERAIEF- 236 (677)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-
Confidence 777776665 3677777777777767777777777777766543 366777766666666777777777777766651
Q ss_pred hcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc---cHHHH
Q 004273 258 MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---TYDGF 334 (764)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~l 334 (764)
-.++... ...|.+...-=.++..++.|.-+|+-.++. -|... .|...
T Consensus 237 -~~~d~~~---------------------------e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~ 286 (677)
T KOG1915|consen 237 -LGDDEEA---------------------------EILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKY 286 (677)
T ss_pred -hhhHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHH
Confidence 1111000 023444444444455556666666555543 22221 11111
Q ss_pred HHHHHhcCChhHHHHH--------HHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----cchHHHH
Q 004273 335 IRAIVSDRGLRNGMEV--------LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNP----KPFSAFL 402 (764)
Q Consensus 335 i~~~~~~~~~~~a~~~--------~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~li 402 (764)
..-=-+-|+.....+. ++.+.+.+.. |-.++-..++.-...|+.+...++|+.......+ ..|.-.|
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYI 365 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYI 365 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHH
Confidence 1111122322221111 2222222211 3333334444444444444444444444332100 1122111
Q ss_pred HHH--------hcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCC
Q 004273 403 AAC--------DTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474 (764)
Q Consensus 403 ~~~--------~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (764)
... ....+++.+.++|+...+ -++
T Consensus 366 YLWinYalyeEle~ed~ertr~vyq~~l~------------------------------------------------lIP 397 (677)
T KOG1915|consen 366 YLWINYALYEELEAEDVERTRQVYQACLD------------------------------------------------LIP 397 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh------------------------------------------------hcC
Confidence 111 112333333444433333 233
Q ss_pred CcHHHHHHHHHHH----hccCcHHHHHHHHHh-cCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 004273 475 HSHISMKNLLKAL----GAEGMIRELIQYFCD-SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549 (764)
Q Consensus 475 ~~~~~~~~l~~~~----~~~g~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ 549 (764)
...+++..+--+| .++.++..|.+++.. ++..|-..++-..|..=.+.++++.+..+|++..+-+ +-|..++..
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~k 476 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSK 476 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHH
Confidence 3344444433333 366788899999865 4667888899999999999999999999999999975 336677777
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---
Q 004273 550 MIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC--- 625 (764)
Q Consensus 550 ll~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--- 625 (764)
....=...|+.+.|..+|...+... +......|-+.|+.=...|.++.|..+++++++. .+...+|-++..--.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~ 554 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhcccc
Confidence 7666677899999999999998763 3334556777777778899999999999999864 445557776654332
Q ss_pred --HcC-----------CHHHHHHHHHHHHH
Q 004273 626 --EKG-----------RIDVIEFIIEQMHQ 642 (764)
Q Consensus 626 --~~g-----------~~~~a~~~~~~m~~ 642 (764)
+.| +...|..+|++...
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 333 45678888887754
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-11 Score=124.74 Aligned_cols=284 Identities=11% Similarity=0.018 Sum_probs=208.9
Q ss_pred HHhcCCcchHHHHHHHhhhccCCCCcch-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHH--HHHHHHHccCCH
Q 004273 62 ALCRGERSRASHLLLNLGHAHHSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYL--LMMQALCKGGYL 138 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~ 138 (764)
....|+|+.|.+......+.. ..+.. |.....+..+.|+++.|.+.++++.+. .|+...+. .....+...|++
T Consensus 94 a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 94 KLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred HHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCH
Confidence 334799999998888765542 22333 333344556889999999999999876 45543332 336678889999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhccChhH
Q 004273 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE-------VTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~ 211 (764)
+.|.+.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+.
T Consensus 170 ~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 247 (398)
T PRK10747 170 HAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG 247 (398)
T ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999997643 345568888999999999999999999999987655322 133344444445556677
Q ss_pred HHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhh
Q 004273 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
..++|+.+.+..+.++.....+...+...|+.+.|.+++++..+. .++.
T Consensus 248 l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~----------------------------- 296 (398)
T PRK10747 248 LKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDE----------------------------- 296 (398)
T ss_pred HHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH-----------------------------
Confidence 777777776667778888888999999999999999999888762 2221
Q ss_pred hHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHH
Q 004273 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370 (764)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 370 (764)
--.++.+....++.+++.+..+...+. .|+.. .+..+-..|.+.+++++|.+.|+...+. .|+..++..+.
T Consensus 297 ----~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La 368 (398)
T PRK10747 297 ----RLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLA 368 (398)
T ss_pred ----HHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 112345555668889999999888876 45544 4667778888999999999999988875 57778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 004273 371 VECSKALELDLAEALLDQIS 390 (764)
Q Consensus 371 ~~~~~~g~~~~A~~~~~~~~ 390 (764)
..+.+.|+.++|.+.+++-.
T Consensus 369 ~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 369 DALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888887653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=137.94 Aligned_cols=267 Identities=12% Similarity=0.018 Sum_probs=114.9
Q ss_pred hhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCC
Q 004273 7 RTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLG 86 (764)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~ 86 (764)
...+ .++..+.+.|++++|+ .++.+. .....|......|..+..-+...++++.|+..++++...+ +-+
T Consensus 9 ~~~l-~~A~~~~~~~~~~~Al-~~L~~~--------~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~ 77 (280)
T PF13429_consen 9 EEAL-RLARLLYQRGDYEKAL-EVLKKA--------AQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-cccccccccccccccc-cccccc--------cccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 3344 5688999999999999 555332 1222122233444444444556899999999999999876 346
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
+..+..++.. ...++++.|.++++...+.. +++..+..++..+.+.|+++++.++++.+.+....+++...|..+..
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~ 154 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAE 154 (280)
T ss_dssp -------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHH
T ss_pred cccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 6677777777 68899999999998877663 56777888899999999999999999998755445667788999999
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHH
Q 004273 167 ACAKLHSMVHANLCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
.+.+.|+.++|++.++...+. .| |......++..+...|+.+++.++++...+..+.|+..+..+..+|...|+.++
T Consensus 155 ~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~ 232 (280)
T PF13429_consen 155 IYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEE 232 (280)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccc
Confidence 999999999999999999986 45 567788899999999999999999999988878888889999999999999999
Q ss_pred HHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 246 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
|..+|++..+ ..|+++ .....+..++.+.|+.++|.++..+...
T Consensus 233 Al~~~~~~~~--~~p~d~------------------------------~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 233 ALEYLEKALK--LNPDDP------------------------------LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHH--HSTT-H------------------------------HHHHHHHHHHT-----------------
T ss_pred cccccccccc--cccccc------------------------------cccccccccccccccccccccccccccc
Confidence 9999999887 555542 4667888999999999999999887643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.6e-10 Score=107.86 Aligned_cols=426 Identities=9% Similarity=0.015 Sum_probs=256.3
Q ss_pred HHhccChhHHHHHHHHHHcc--CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCC
Q 004273 203 AVWQKNLSAVHEIWEDYIKH--YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
|.......+|+..|+.+++. ++.....-..+.+.+.+...+.+|++++...... .|...
T Consensus 211 y~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsin----------------- 271 (840)
T KOG2003|consen 211 YEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSIN----------------- 271 (840)
T ss_pred hhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccc-----------------
Confidence 33444456777777777764 3333344445566777888888888888877652 22210
Q ss_pred ccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004273 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 360 (764)
++.-.-..+.+--.+.+.|+++.|+..|+...+. .|+..+--.|+-++...|+-++..+.|..|+..-..
T Consensus 272 --------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~ 341 (840)
T KOG2003|consen 272 --------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGE 341 (840)
T ss_pred --------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCC
Confidence 0000124455555677888888888888887765 577776555666666778888888888888764333
Q ss_pred Cchh------------HHHH-----HHHHHHhcCC--HHHHHHHHHHHhhCC---CC---cch----------H------
Q 004273 361 PQDS------------TIAT-----LSVECSKALE--LDLAEALLDQISRCT---NP---KPF----------S------ 399 (764)
Q Consensus 361 ~~~~------------~~~~-----li~~~~~~g~--~~~A~~~~~~~~~~~---~~---~~~----------~------ 399 (764)
||.. ..+. .+.-.-+... .+++.-.--.+...- +- .-| .
T Consensus 342 ~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl 421 (840)
T KOG2003|consen 342 IDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL 421 (840)
T ss_pred CCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh
Confidence 3222 2221 1111111111 111111111111100 00 001 0
Q ss_pred --HHHHHHhcCCCHHHHHHHHHHHhh-ccCCCH--HhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCC
Q 004273 400 --AFLAACDTMDKPERAIKIFAKMRQ-KLRPDI--RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474 (764)
Q Consensus 400 --~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~--~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (764)
.-...|.++|+++.|+++++-..+ .-+.-. .+-...+.-+ ..++-+.. ...+.+.... .-.
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~fl-------qggk~~~~------aqqyad~aln-~dr 487 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFL-------QGGKDFAD------AQQYADIALN-IDR 487 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHH-------hcccchhH------HHHHHHHHhc-ccc
Confidence 112347889999999999887765 211111 1111112111 11111110 0011000000 000
Q ss_pred CcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChh----hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 004273 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550 (764)
Q Consensus 475 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~l 550 (764)
-+....+.--..-...|++++|.+.+++.. ..|.. .|| +.-.+-..|+.++|++.|-++..- +..+......+
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal-~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qi 564 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEAL-NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQI 564 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHH-cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHH
Confidence 111111111122345789999999998762 22322 233 233456789999999999887543 23466677778
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 004273 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630 (764)
Q Consensus 551 l~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 630 (764)
.+.|....+..+|.+++-+.... ++.|+...+.|.+.|-+.|+-.+|.+.+-.-- .-++-+..+..-|..-|....-+
T Consensus 565 aniye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHHHHHHhhHHH
Confidence 88888889999999999777664 56688999999999999999999988765432 13455777777788888888889
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHhcCChHHHHHHHHHHHHh
Q 004273 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSG-YVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 631 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~ 678 (764)
++++.+|++.. -+.|+..-|-.++.. +.+.|.+.+|.++++.+.++
T Consensus 643 ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 643 EKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99999999876 489999999998874 56689999999999988653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-10 Score=119.38 Aligned_cols=289 Identities=12% Similarity=-0.026 Sum_probs=178.9
Q ss_pred HHhcCCcchHHHHHHHhhhccCCCCcch-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccH--HHHHHHHHHHHccCCH
Q 004273 62 ALCRGERSRASHLLLNLGHAHHSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNN--KCYLLMMQALCKGGYL 138 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~ 138 (764)
....|+++.|.+.+.+..+.. |++.. +-....+..+.|+++.|.+.+++..+.. |+. ...-.....+...|++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 445788999998888776653 44433 3344566667788899998888887653 333 2333446777788899
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH---HhccChhHHHHH
Q 004273 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA---VWQKNLSAVHEI 215 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~~a~~~ 215 (764)
+.|.+.++.+.+.. +-+..++..+...+.+.|++++|.+++..+.+.++.+.......-..++ ...+..+.+.+.
T Consensus 170 ~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 170 HAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999888887653 3344577788888888899999999998888876543222111111111 222222222223
Q ss_pred HHHHHc----cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhh
Q 004273 216 WEDYIK----HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 216 ~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
+..+.+ ..+.++..+..+...+...|+.+.|.+++++..+ ..|+...
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~--------------------------- 298 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRA--------------------------- 298 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCccc---------------------------
Confidence 333333 2335777777777788888888888888887776 3333310
Q ss_pred hHhh-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHH
Q 004273 292 LRWS-FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367 (764)
Q Consensus 292 ~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 367 (764)
.. ...........++.+.+.+.++...+. .|+.. ...++-..+.+.|++++|.+.|+........|+...+.
T Consensus 299 --~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 299 --ISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred --chhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 01 111112223346666777777666654 34444 33456666777777777777777544444456666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 004273 368 TLSVECSKALELDLAEALLDQI 389 (764)
Q Consensus 368 ~li~~~~~~g~~~~A~~~~~~~ 389 (764)
.+...+.+.|+.++|.+++++.
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777777777776654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.6e-13 Score=130.95 Aligned_cols=258 Identities=12% Similarity=0.043 Sum_probs=86.4
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHH-HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFH-ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
...+...|++++|+++++.......+|+...|-. +...+...++++.|++.++++...+. -++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 5556778888888888855443331244444433 44455566788888888888877652 355666676665 67788
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhccChhHHHHHH
Q 004273 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
+++|.++++...++. ++...+..++..+.+.++++++..+++...... ..++...|..+...+.+.|+.++|.+.+
T Consensus 93 ~~~A~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYERD---GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc---cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888877665432 445566777777788888888888888766432 2345556666666667777777777777
Q ss_pred HHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhH
Q 004273 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 217 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
++..+..|.|....+.++..+...|+.+++.++++...+.. |+++ ..|
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~------------------------------~~~ 217 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDP------------------------------DLW 217 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSC------------------------------CHC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHH------------------------------HHH
Confidence 77777666677777777777777777777777776666532 1110 255
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 004273 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354 (764)
Q Consensus 297 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 354 (764)
..+..++...|+.++|+..|++..... +.|......+..++...|+.++|.++..+.
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 666666777777777777777766542 224555555666666666666666665554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-10 Score=106.73 Aligned_cols=275 Identities=10% Similarity=0.032 Sum_probs=183.5
Q ss_pred HHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcC-cccc--HHHHHHHHHHHHccC
Q 004273 60 VDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE-IGLN--NKCYLLMMQALCKGG 136 (764)
Q Consensus 60 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g 136 (764)
..+.-+.++++|+++|-+|.+.+ +-+.++..+|.+.|.+.|..+.|+++++.+.++. .+-+ ......|..-|...|
T Consensus 43 lNfLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 43 LNFLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HHHHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence 34566788999999999998854 3344556788888999999999999999988763 2111 235557778888999
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhccChhHH
Q 004273 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV----TYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a 212 (764)
-+|.|+.+|..+.+..... ......|+..|-+..++++|+++-+++...+..+..+ -|..+-..+....+++.|
T Consensus 122 l~DRAE~~f~~L~de~efa--~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEFA--EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhHHHHHHHHHhcchhhh--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999999887533222 2367789999999999999999999888876555443 233444455556677777
Q ss_pred HHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhh
Q 004273 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
..++.+..+..+..+.+--.+.+.+...|+++.|.+.++.+.+.+..--.
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~------------------------------ 249 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS------------------------------ 249 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH------------------------------
Confidence 77777777666666666666777777777777777777777763322111
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHH
Q 004273 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 372 (764)
.+...|..+|.+.|+.++....+.++.+.. +....-..+-..-......+.|..++.+-... +|+...+..+|..
T Consensus 250 -evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 250 -EVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 456667777777777777777777766642 23333333333333334444455444443333 3455555555543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-08 Score=96.37 Aligned_cols=428 Identities=13% Similarity=0.108 Sum_probs=255.6
Q ss_pred hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCC
Q 004273 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (764)
.++++..|..+|+........+...|-..+.+-.++..+..|..++++....-...+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd----------------------- 141 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD----------------------- 141 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-----------------------
Confidence 445555566666666655555555666666666666666666666666554211111
Q ss_pred cccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchh
Q 004273 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364 (764)
Q Consensus 285 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 364 (764)
-.|--.+..=-..|++..|.++|++-.+- .|+..+|.+.|+-=.+-+.++.|..+++...-. .|++.
T Consensus 142 ---------qlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~ 208 (677)
T KOG1915|consen 142 ---------QLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVS 208 (677)
T ss_pred ---------HHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHH
Confidence 14444444444456666666666665543 566666666666666666666666666665542 35566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC-C----CcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCC--HHhHHHHHH
Q 004273 365 TIATLSVECSKALELDLAEALLDQISRCT-N----PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPD--IRTYELLFS 437 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~--~~t~~~ll~ 437 (764)
+|-.....=.++|.+..|..+|....+.- + ...++++..-=.++..++.|.-+|+-....++.+ ...|.....
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTA 288 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 66555555666666666666666554321 1 1222333322334455556665555544422222 222222221
Q ss_pred HhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc--CCCCCh--hhHH
Q 004273 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGT--PTYN 513 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~--~~~~ 513 (764)
-=-+.|+...- +..-..++-.++...+.++.. |--+|--.+..-...|+.+...++++.. ..+|-. ..|.
T Consensus 289 fEKqfGd~~gI----Ed~Iv~KRk~qYE~~v~~np~--nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~ 362 (677)
T KOG1915|consen 289 FEKQFGDKEGI----EDAIVGKRKFQYEKEVSKNPY--NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWR 362 (677)
T ss_pred HHHHhcchhhh----HHHHhhhhhhHHHHHHHhCCC--CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHH
Confidence 11111111000 001112222333334444433 3344555666666779999999999875 223321 1232
Q ss_pred HHHH--------HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCChhHHHHHHHHHHHCCCCCCHHH
Q 004273 514 TVLH--------SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS----IIRCFKSASALVSMMVRDGFYPQTMT 581 (764)
Q Consensus 514 ~li~--------~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~p~~~~ 581 (764)
-.|. .=....+.+.+.++|+...+. ++-...||.-+=-.|+ ++.++..|.+++...+. ..|...+
T Consensus 363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~Kl 439 (677)
T KOG1915|consen 363 RYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKL 439 (677)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhH
Confidence 2222 223467899999999998883 4445567765544444 56788999999987764 5788899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHH
Q 004273 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK-VQPDPSTCHFVFSGYV 660 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~ 660 (764)
|-..|..=.+.+++|...+++++.++-+ +-|..+|......-...|+.++|..+|+-.++.. +......|...|..=.
T Consensus 440 Fk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi 518 (677)
T KOG1915|consen 440 FKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEI 518 (677)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhh
Confidence 9999999999999999999999999654 4477899988888888999999999999998632 2223334444555556
Q ss_pred hcCChHHHHHHHHHHHHh
Q 004273 661 NCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 661 ~~g~~~~a~~~~~~~~~~ 678 (764)
..|.+++|..+++.+..+
T Consensus 519 ~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 519 EEGEFEKARALYERLLDR 536 (677)
T ss_pred hcchHHHHHHHHHHHHHh
Confidence 789999999999988764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-09 Score=112.60 Aligned_cols=117 Identities=15% Similarity=-0.006 Sum_probs=88.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004273 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385 (764)
Q Consensus 306 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 385 (764)
.|+++.|.+.+....+..-.| ...|.....+....|+++.+...+.++.+....+...........+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 699999998888766542111 2223333445578999999999999998754332222222446788999999999999
Q ss_pred HHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004273 386 LDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 386 ~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
++.+.+.. ++.....+...|.+.|++++|.+++..+.+
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k 215 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK 215 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99987764 667788899999999999999999999998
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-09 Score=110.72 Aligned_cols=127 Identities=11% Similarity=-0.071 Sum_probs=98.1
Q ss_pred HHHHHHH--HccCCHHHHHHHHHHHHHCCCCCCccc-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHH
Q 004273 297 SDVIHAC--GRTQNSGLAEQLMLQMQSLGLQPSSHT-YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 297 ~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 373 (764)
..+..+. ...|+++.|.+.+.+..+. .|+... +-....+....|+.+.+...+....+....+...+.......+
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 3344443 4589999999999887765 455433 3344566778899999999999988755333333444568888
Q ss_pred HhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-cc
Q 004273 374 SKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KL 425 (764)
Q Consensus 374 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~ 425 (764)
...|+++.|...++.+.+.. ++.++..+...+.+.|++++|.+++....+ ++
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 99999999999999998764 667788899999999999999999999998 54
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-09 Score=102.29 Aligned_cols=286 Identities=14% Similarity=0.017 Sum_probs=211.0
Q ss_pred hcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHH
Q 004273 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143 (764)
Q Consensus 64 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 143 (764)
..|+|.+|.++...-.+.+- -....|..-.++..+.||.+.+-..+.+..+.--.++...+-.........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 47999999999998777662 22334555667777889999999999999887445677777788888999999999999
Q ss_pred HHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh-------hHHHHHHHHHhccChhHHHHHH
Q 004273 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV-------TYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
-++.+.+.. +-+.........+|.+.|++.....++..+.+.|.--|+. +|..+++-....++.+.-...|
T Consensus 175 ~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 888886543 3355688889999999999999999999999998776554 6777887777777777777788
Q ss_pred HHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhH
Q 004273 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 217 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
+........++..-.+++.-+..+|+.++|.++..+..+.+.+|..
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---------------------------------- 298 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---------------------------------- 298 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----------------------------------
Confidence 8777777777777778888888888888888888888876555432
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhc
Q 004273 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376 (764)
Q Consensus 297 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 376 (764)
...-.+.+-++...-++..+.-.... .-+.-.+.+|-..|.+.+.|.+|...|+...+ ..|+..+|+-+.+.+.+.
T Consensus 299 -~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 299 -CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQL 374 (400)
T ss_pred -HHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHc
Confidence 12233455666666666665554432 12335566677777788888888888875554 355677777777777777
Q ss_pred CCHHHHHHHHHHHh
Q 004273 377 LELDLAEALLDQIS 390 (764)
Q Consensus 377 g~~~~A~~~~~~~~ 390 (764)
|+.++|.+++++..
T Consensus 375 g~~~~A~~~r~e~L 388 (400)
T COG3071 375 GEPEEAEQVRREAL 388 (400)
T ss_pred CChHHHHHHHHHHH
Confidence 77777777766643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-08 Score=95.93 Aligned_cols=356 Identities=13% Similarity=0.110 Sum_probs=229.2
Q ss_pred CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHH
Q 004273 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302 (764)
Q Consensus 223 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 302 (764)
...|.+.+-.....+-+.|....|+..|..... .-| +.|.+.+..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~--~~P---------------------------------~~W~AWleL 204 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVN--RYP---------------------------------WFWSAWLEL 204 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHh--cCC---------------------------------cchHHHHHH
Confidence 455566555556667788888888888887764 122 344444433
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCcccHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHH
Q 004273 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYD--GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380 (764)
Q Consensus 303 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (764)
..-..+.+.+. .... |...|.+-+. .+..++......+++..=.......|+.-+...-+....+.-...+++
T Consensus 205 ~~lit~~e~~~----~l~~-~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD 279 (559)
T KOG1155|consen 205 SELITDIEILS----ILVV-GLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFD 279 (559)
T ss_pred HHhhchHHHHH----HHHh-cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHH
Confidence 32222232222 2221 1122222111 233455566677777777777777777655555555555556667777
Q ss_pred HHHHHHHHHhhCC-----CCcchHHHHHHHhcCCCHHH-HHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhh
Q 004273 381 LAEALLDQISRCT-----NPKPFSAFLAACDTMDKPER-AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454 (764)
Q Consensus 381 ~A~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~-a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~ 454 (764)
.|+.+|+++.+.. |..+|+.++-.-....+..- |..++ .+. ..+
T Consensus 280 ~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~id-KyR---------------------------- 329 (559)
T KOG1155|consen 280 QAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NID-KYR---------------------------- 329 (559)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hhc-cCC----------------------------
Confidence 7777777777652 33444444322111111000 00000 000 111
Q ss_pred hhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc-CC-CCChhhHHHHHHHHHHcCChhHHHHHH
Q 004273 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KT-PLGTPTYNTVLHSLVEAQESHRAMEIF 532 (764)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~A~~l~ 532 (764)
+.++..+.+-|+-.++-+.|...|+.. .. +.....|+-|.+-|....+...|++-|
T Consensus 330 ----------------------~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 330 ----------------------PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred ----------------------ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 222333445566667788888888764 22 334568999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004273 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612 (764)
Q Consensus 533 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 612 (764)
+...+-+ +.|-..|-.|-++|...+.+.-|+-+|++..+.. +-|...|.+|.++|.+.+++++|++-|.+....| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9998864 4577889999999999999999999999998863 4578999999999999999999999999988665 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHhhHH---HHHHHHHhcCChHHHHHHHHH
Q 004273 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQN----KVQPDPSTCH---FVFSGYVNCGFHNSAMEALQV 674 (764)
Q Consensus 613 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~ 674 (764)
+...+..|...|-+.++.++|...+++.++. |..-+ .|.. .|..-+.+.+++++|..+...
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~-~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD-ETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 6678999999999999999999888877652 32222 2222 234467778888888776653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-10 Score=116.54 Aligned_cols=283 Identities=12% Similarity=-0.035 Sum_probs=144.3
Q ss_pred CCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcC--ccccHHHHHHHHHHHHccCCH-HHHH
Q 004273 66 GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE--IGLNNKCYLLMMQALCKGGYL-EEAS 142 (764)
Q Consensus 66 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~-~~A~ 142 (764)
-++++|+..|+++..+. .-+......+.++|...++++.|..+|+.+.+.. ..-+..+|..++-.+-+.=.. --|.
T Consensus 333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 45566666666643332 2222334455556666666666666666665542 112444555554333221100 0112
Q ss_pred HHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHc
Q 004273 143 NLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
.+.+ .+...| .+|-++.++|.-+++.+.|++.|++..+. .| ...+|+.+-.-+....++|.|...|...+.
T Consensus 412 ~Li~----~~~~sP--esWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 412 DLID----TDPNSP--ESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHh----hCCCCc--HHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 2222 222222 36666666666666666666666665553 23 444555554455555666666666666655
Q ss_pred cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHH
Q 004273 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
-.+.+-.+|.-|...|.|.++++.|.-.|+++.+ +.|.. .+....+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~n------------------------------svi~~~~g~ 531 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSN------------------------------SVILCHIGR 531 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccc------------------------------hhHHhhhhH
Confidence 5555555555566666666666666666666655 34433 123334445
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHH
Q 004273 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381 (764)
Q Consensus 302 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (764)
.+-+.|+.++|+++|++......+ |+.+---....+...+++++|+..++++.+.-+. +..++..+...|-+.|+.+.
T Consensus 532 ~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 532 IQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDL 609 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchH
Confidence 555566666666666665544311 3333333344445556666666666666554222 33444455555555555555
Q ss_pred HHHHHHHHhh
Q 004273 382 AEALLDQISR 391 (764)
Q Consensus 382 A~~~~~~~~~ 391 (764)
|..-|.-+.+
T Consensus 610 Al~~f~~A~~ 619 (638)
T KOG1126|consen 610 ALLHFSWALD 619 (638)
T ss_pred HHHhhHHHhc
Confidence 5555554443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-10 Score=115.60 Aligned_cols=281 Identities=8% Similarity=-0.029 Sum_probs=187.2
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHH
Q 004273 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCL 181 (764)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 181 (764)
..+|...|+..... +.-+.+....+..+|...+++++|+++|+.+.+..+... +..+|.+.+.-+-+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45677777774433 334446667777888888888888888887765543322 34466666654432 2222222
Q ss_pred H-HHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcc
Q 004273 182 D-LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG 260 (764)
Q Consensus 182 ~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 260 (764)
. .+... -+-.+.||.++-++|.-+++.+.|.+.|++..+-.+....+|+.+.+=+.....+|.|...|..... +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 1 12221 1225667888888888888888888888888777777778888888777788888888888887765 333
Q ss_pred cchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 004273 261 KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340 (764)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 340 (764)
... .+|.-+.-.|.+.++++.|.-.|+...+.+. -+.+....+...+-+
T Consensus 487 rhY------------------------------nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~ 535 (638)
T KOG1126|consen 487 RHY------------------------------NAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQ 535 (638)
T ss_pred hhh------------------------------HHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHH
Confidence 321 3566667778888888888888887776542 244455556666777
Q ss_pred cCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHH
Q 004273 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIF 418 (764)
Q Consensus 341 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~ 418 (764)
.|+.++|++++++....+.+ |+-.--.-+..+...++.++|+..+++++... +...+-.+...|.+.|+.+.|+.-|
T Consensus 536 ~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred hhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 78888888888887776655 33333334445666678888888888877643 5666777778888888888888777
Q ss_pred HHHhh
Q 004273 419 AKMRQ 423 (764)
Q Consensus 419 ~~m~~ 423 (764)
.-+..
T Consensus 615 ~~A~~ 619 (638)
T KOG1126|consen 615 SWALD 619 (638)
T ss_pred HHHhc
Confidence 77766
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-06 Score=88.25 Aligned_cols=295 Identities=14% Similarity=0.114 Sum_probs=162.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC--C----CcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCC---------
Q 004273 365 TIATLSVECSKALELDLAEALLDQISRCT--N----PKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPD--------- 428 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~--------- 428 (764)
.+..+.+.|-..|+++.|..+|+....-+ . ..+|-.-...=.+..+++.|+++.+.... .-.|.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 35677778888888888888888887653 1 12233333344456677777777666543 11111
Q ss_pred --HHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcC--
Q 004273 429 --IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK-- 504 (764)
Q Consensus 429 --~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-- 504 (764)
...+.++ ...+..-+ +.+.++-.+..+.+++.+....+.....+ -...-.+-.+..++++.+++++..
T Consensus 469 vQ~rlhrSl-kiWs~y~D------leEs~gtfestk~vYdriidLriaTPqii-~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 469 VQARLHRSL-KIWSMYAD------LEESLGTFESTKAVYDRIIDLRIATPQII-INYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHHHHhH-HHHHHHHH------HHHHhccHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 0111111 00000001 11112222344455555555554322222 222223345566788888887642
Q ss_pred -CCCChh-hHHHHHHHHHHc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HccCChhHHHHHHHHHHHCCCCC
Q 004273 505 -TPLGTP-TYNTVLHSLVEA---QESHRAMEIFKQMKTCGIPPNAATYNIMIDCC--SIIRCFKSASALVSMMVRDGFYP 577 (764)
Q Consensus 505 -~~~~~~-~~~~li~~~~~~---~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~p 577 (764)
..|++. .||+.+.-+.+. -..+.|..+|++..+ |++|...-+.-|+-+- -..|....|..++++.... +++
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~ 618 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKE 618 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCH
Confidence 235543 788777666653 367889999999888 6776554443333221 1347777888888886653 333
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCC--CHh
Q 004273 578 Q--TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI---LKKACEKGRIDVIEFIIEQMHQNKVQP--DPS 650 (764)
Q Consensus 578 ~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~ 650 (764)
. ...||..|.--...=-+.....+|++.++. -||...-..- ...=++.|..++|..++..--+. ..| +..
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~ 695 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTE 695 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChH
Confidence 3 345777665544443445566677777654 4555443332 33346778888988888776542 333 344
Q ss_pred hHHHHHHHHHhcCChHHHHHHH
Q 004273 651 TCHFVFSGYVNCGFHNSAMEAL 672 (764)
Q Consensus 651 ~~~~ll~~~~~~g~~~~a~~~~ 672 (764)
.|.+.-..=.+.|+-+...+.+
T Consensus 696 fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 696 FWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHH
Confidence 4555555567788844444433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.3e-08 Score=97.52 Aligned_cols=491 Identities=13% Similarity=0.124 Sum_probs=255.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 004273 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW 205 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (764)
..++..| ..+++...+++.+.+.++.+-.++ +.....-.+...|+.++|......-.+..+. +.+.|..+--.+..
T Consensus 12 ~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHge--slAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 12 RRALKCY-ETKQYKKGLKLIKQILKKFPEHGE--SLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHhCCccch--hHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 3344433 345666666666666655444444 3333333345567777777766665554333 55566666655666
Q ss_pred ccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCc
Q 004273 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
..++++|.+.|....+-.+.|...+.-|--.-+..++++.....-....+ ..|..
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq--l~~~~----------------------- 142 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ--LRPSQ----------------------- 142 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--hhhhh-----------------------
Confidence 67777777777777776677777777766666677777777776666665 33332
Q ss_pred ccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCcccHHHHHH------HHHhcCChhHHHHHHHHHHHCC
Q 004273 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIR------AIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~------~~~~~~~~~~a~~~~~~m~~~~ 358 (764)
...|..+..++.-.|+...|..++++..+.. -.|+...|.-... ...+.|..+.|.+-+..-...
T Consensus 143 -------ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~- 214 (700)
T KOG1156|consen 143 -------RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ- 214 (700)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-
Confidence 2477778888888888888888888877654 2455555443322 233566666666655544332
Q ss_pred CCCchhHH-HHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcchHH-HHHHHhcCCCHHHHH-HHHHHHhhc----cCCCHH
Q 004273 359 LKPQDSTI-ATLSVECSKALELDLAEALLDQISRCT-NPKPFSA-FLAACDTMDKPERAI-KIFAKMRQK----LRPDIR 430 (764)
Q Consensus 359 ~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~-li~~~~~~g~~~~a~-~l~~~m~~~----~~p~~~ 430 (764)
+. |...+ -.-...+.+.+++++|..++..+..+. |...|.- +..++.+-.+.-+++ .+|....+. -.|-..
T Consensus 215 i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rl 293 (700)
T KOG1156|consen 215 IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRL 293 (700)
T ss_pred HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhc
Confidence 11 22222 245566778888888888888887664 4444443 344443333333444 555554431 111111
Q ss_pred hHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChh
Q 004273 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510 (764)
Q Consensus 431 t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 510 (764)
..+.+ . .......+..+.....+.|+++- +..+.+.|-.-...+ +
T Consensus 294 plsvl-~----------------~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~----~----------- 338 (700)
T KOG1156|consen 294 PLSVL-N----------------GEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVA----F----------- 338 (700)
T ss_pred cHHHh-C----------------cchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhH----H-----------
Confidence 11111 1 01122334445555666666542 222322222111110 0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 004273 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA--TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT-MTYTALIK 587 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~li~ 587 (764)
.--++..|...-.........+.=.. -+|... |+-.+...+-+.|+++.|+.+++..+.+ .|+. ..|..=.+
T Consensus 339 -le~Lvt~y~~~L~~~~~f~~~D~~~~--E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaR 413 (700)
T KOG1156|consen 339 -LEKLVTSYQHSLSGTGMFNFLDDGKQ--EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKAR 413 (700)
T ss_pred -HHHHHHHHHhhcccccCCCccccccc--CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHH
Confidence 00111111110000000000000000 133433 3344555566667777777777776664 3443 33444456
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHhhHHHHH---HHH
Q 004273 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP-----DPSTCHFVF---SGY 659 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~ll---~~~ 659 (764)
.+...|.+++|..++++..+.. .||..+-.--..-..++++.++|.++.....+.|..- +..+.+..+ .+|
T Consensus 414 I~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay 492 (700)
T KOG1156|consen 414 IFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAY 492 (700)
T ss_pred HHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHH
Confidence 6677777777777777766543 4454444344444556667777777776666555310 111111122 377
Q ss_pred HhcCChHHHHHHHHHHHHhhhccccCchHhhHHHHHHhhhh
Q 004273 660 VNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILA 700 (764)
Q Consensus 660 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (764)
.+.|++..|++=|..+.+. ...|.+-.--+|..+..
T Consensus 493 ~r~~k~g~ALKkfh~i~k~-----~~~~~~dqfDfhtyc~r 528 (700)
T KOG1156|consen 493 LRQNKLGLALKKFHEIEKH-----YKTWSEDQFDFHTYCMR 528 (700)
T ss_pred HHHHHHHHHHHHHhhHHHH-----HHHHhhhhhhHHHHHHh
Confidence 7888888887776665532 12444444445555543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-07 Score=89.01 Aligned_cols=137 Identities=7% Similarity=0.079 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004273 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 590 (764)
--.++.+.+.-..++++.+-.++.+..--..-|...| .+..+++..|.+.+|+++|-.+....++.+..-...|.++|.
T Consensus 361 GRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 361 GRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYI 439 (557)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHH
Confidence 3445666666667788888888877765333333333 466788888999999999877765555544444466778889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 004273 591 DYGDFDEALNLLDLVSLEGIPHDVL-LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 653 (764)
+++.++-|++++-++.. +.+.. ....+..-|.+.+.+=-|-+.|+.+.. ..|++..|.
T Consensus 440 ~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred hcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 99999999888776531 22233 334455678888888777888887764 567766553
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-12 Score=87.19 Aligned_cols=50 Identities=36% Similarity=0.574 Sum_probs=40.7
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004273 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556 (764)
Q Consensus 507 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 556 (764)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888888764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.5e-09 Score=95.67 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=91.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCchh--HHHHHHHHHHhcCCHHH
Q 004273 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN-LKPQDS--TIATLSVECSKALELDL 381 (764)
Q Consensus 305 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~--~~~~li~~~~~~g~~~~ 381 (764)
-+.+.++|.++|-+|.+.. +-+..+--+|-+.|.+.|..+.|+.+++.+.++- ..-+.. ....|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3678999999999999742 1233344567788889999999999999988753 221111 23467788999999999
Q ss_pred HHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004273 382 AEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 382 A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
|+.+|..+.+.+ -...--.|+..|-...+|++|++.-+++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k 169 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK 169 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999998864 445566789999999999999999888876
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.6e-09 Score=100.93 Aligned_cols=307 Identities=9% Similarity=-0.060 Sum_probs=214.7
Q ss_pred HHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCc--cccHHHHHHHHHHHHccCCHH
Q 004273 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI--GLNNKCYLLMMQALCKGGYLE 139 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 139 (764)
+-...+.++++.-.+.+...|.+.+...-+....+.-...|++.|..+|+++.+.+. -.|..+|+.++-+--.+.++.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 334456666666666666666443333323333333355788888888888887741 125667777664433322221
Q ss_pred -HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHH
Q 004273 140 -EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 140 -~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
-|..+++ -+..+|. |.-.+.+-|+-.++.++|...|++..+.++. ....|+.+-.-|....+-..|.+-+..
T Consensus 317 ~LA~~v~~----idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 317 YLAQNVSN----IDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHH----hccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2333322 2334444 6666777778888899999999998886533 556777788889999999999999999
Q ss_pred HHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHH
Q 004273 219 YIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298 (764)
Q Consensus 219 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (764)
.++-.|.|-..|-.|..+|.-.+-+.-|+-.|++..+ .+|++ ...|.+
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnD------------------------------sRlw~a 437 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPND------------------------------SRLWVA 437 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCc------------------------------hHHHHH
Confidence 9999999999999999999999999999999999888 77776 368999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCchhH--HHHHHHH
Q 004273 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ----NNLKPQDST--IATLSVE 372 (764)
Q Consensus 299 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~--~~~li~~ 372 (764)
|..+|.+.++.++|++.|.+....|- .+...+..|.+.+-+.++.++|...|....+ .|...+... ..-|..-
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~ 516 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEY 516 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 99999999999999999999888763 2557888899999999999999988887665 233322121 1235556
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004273 373 CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 373 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
+.+.+++++|.........- .-..++|..+++++++
T Consensus 517 f~k~~~~~~As~Ya~~~~~~---------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 517 FKKMKDFDEASYYATLVLKG---------------ETECEEAKALLREIRK 552 (559)
T ss_pred HHhhcchHHHHHHHHHHhcC---------------CchHHHHHHHHHHHHH
Confidence 67778887776544433221 3346788888888776
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.3e-07 Score=90.45 Aligned_cols=474 Identities=10% Similarity=0.001 Sum_probs=290.1
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004273 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 57 ~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 136 (764)
..+..+-..+++...+.+.+.+.+.. +-...+.....-.+...|+.++|.+..+...+.+ ..+.+.|..+.-.+-...
T Consensus 12 ~~~lk~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 12 RRALKCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhh
Confidence 33455667788888888888887733 4444555544444455688999998888887765 456778888887777788
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHH
Q 004273 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
++++|++.|.....-. +.|...|.-|--.-++.|+++.....-....+..+ -....|....-++.-.|+...|..+.
T Consensus 90 ~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876422 33555666665556677888877777666666421 14446667777777889999999999
Q ss_pred HHHHccC--CCCHHhHHHHHH------HhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccc
Q 004273 217 EDYIKHY--SLSIFSLRKFVW------SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 217 ~~~~~~~--~~~~~~~~~li~------~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
+...+.. .|+...+..... ...+.|.++.|.+.+..-...-+..-
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkl--------------------------- 219 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKL--------------------------- 219 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHH---------------------------
Confidence 9998753 577666555433 34567788888777666544211110
Q ss_pred hhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH-hcCChhHH-HHHHHHHHHCCCCCchhHH
Q 004273 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV-SDRGLRNG-MEVLKIMQQNNLKPQDSTI 366 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-~~~~~~~a-~~~~~~m~~~~~~~~~~~~ 366 (764)
..-.+-...+.+.+++++|..++..+... .||...|...+..+. +..+..++ ..+|....+.-.......
T Consensus 220 -----a~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~- 291 (700)
T KOG1156|consen 220 -----AFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR- 291 (700)
T ss_pred -----HHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch-
Confidence 12233456678889999999999999987 588887776665444 33333333 366665554321111000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCch
Q 004273 367 ATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPY 446 (764)
Q Consensus 367 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~ 446 (764)
..=++......-.+....++....+.|-+.++..+.+-|-.-...+ ++++.. ..|...++..+.....
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~----~le~Lv-------t~y~~~L~~~~~f~~~- 359 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA----FLEKLV-------TSYQHSLSGTGMFNFL- 359 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH----HHHHHH-------HHHHhhcccccCCCcc-
Confidence 0000111111112223334444444445556666655554433222 222211 1111111111110000
Q ss_pred hhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHH--HHHHHhccCcHHHHHHHHHhc-CCCCChh-hHHHHHHHHHHc
Q 004273 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN--LLKALGAEGMIRELIQYFCDS-KTPLGTP-TYNTVLHSLVEA 522 (764)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~li~~~~~~ 522 (764)
+. ..-=+|+...|+. ++..|-+.|+++.|...++.. ...|+.+ .|-+=...+...
T Consensus 360 ---------D~------------~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~ 418 (700)
T KOG1156|consen 360 ---------DD------------GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHA 418 (700)
T ss_pred ---------cc------------cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhc
Confidence 00 0011455555554 788899999999999999875 3345543 565666788889
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH--------HHH--HHHHHHhc
Q 004273 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT--------YTA--LIKILLDY 592 (764)
Q Consensus 523 ~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~--------~~~--li~~~~~~ 592 (764)
|++++|..++++.++.+ .||...-.--.....+.+..++|..+.....+.|. +... |-. =..+|.+.
T Consensus 419 G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~ 495 (700)
T KOG1156|consen 419 GLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQ 495 (700)
T ss_pred CChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHH
Confidence 99999999999999876 45665544555566678999999999999998875 2222 211 13567788
Q ss_pred CCHHHHHHHHHHHH
Q 004273 593 GDFDEALNLLDLVS 606 (764)
Q Consensus 593 g~~~~A~~~~~~m~ 606 (764)
|++-.|++=|..+.
T Consensus 496 ~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 496 NKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHhhHH
Confidence 88877776665543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.6e-08 Score=96.96 Aligned_cols=191 Identities=15% Similarity=0.122 Sum_probs=141.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHhc--CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 004273 480 MKNLLKALGAEGMIRELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557 (764)
Q Consensus 480 ~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 557 (764)
|-.+..+|....+-++....|+.. ..+-+..+|..-...+.-.+++++|..=|++.+... +-+...|.-+-.+..+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence 334555677777777777777664 234456678777777788889999999999988853 22445566666666788
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CC--HHHHHHHHHHHHHcCCH
Q 004273 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP-----HD--VLLYNTILKKACEKGRI 630 (764)
Q Consensus 558 ~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~--~~~~~~li~~~~~~g~~ 630 (764)
+.++++...|++.++. ++-.+..|+.....+...++++.|.+.|+..++..-. .+ +.+--.++-.-.+ +++
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~ 519 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhH
Confidence 9999999999999886 6667888999999999999999999999998753211 12 2222233332233 889
Q ss_pred HHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004273 631 DVIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 631 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
..|+.++++..+ +.|. ...|..|...-...|+.++|+++|++-
T Consensus 520 ~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 520 NQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999985 5564 446777888999999999999999864
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-06 Score=92.79 Aligned_cols=492 Identities=14% Similarity=0.117 Sum_probs=275.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCC--CCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004273 125 YLLMMQALCKGGYLEEASNLIYFLGERYGI--YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
+..+.+.|.++|-+..|++.+..+..-... ..+...=..++ .|.-.-.++.+.+.++.|...++.-+..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 566778888999999998877765321100 00000011122 344456789999999999998888888777777777
Q ss_pred HHhccChhHHHHHHHHHHc------------cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccc
Q 004273 203 AVWQKNLSAVHEIWEDYIK------------HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 270 (764)
|..+=..+...++|+.... .+..|+.+.-..|.+.++.|++.+..++-++--- ..| ..+..
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~--Ydp-----ErvKN 760 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNC--YDP-----ERVKN 760 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcccc--CCH-----HHHHH
Confidence 7766666777777777653 1567888888899999999999888777544211 111 11122
Q ss_pred cccccccCCCccCCccc-----chhhhHhhH-------------------------------------------------
Q 004273 271 RLRSSRLDIPIPLNALP-----VMKVLRWSF------------------------------------------------- 296 (764)
Q Consensus 271 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~------------------------------------------------- 296 (764)
.++++.+....|.-... ..+...+.|
T Consensus 761 fLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~ 840 (1666)
T KOG0985|consen 761 FLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFP 840 (1666)
T ss_pred HHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCC
Confidence 33333333322221000 000000111
Q ss_pred -HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHH----------HHHHHHHHHCC-------
Q 004273 297 -SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG----------MEVLKIMQQNN------- 358 (764)
Q Consensus 297 -~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a----------~~~~~~m~~~~------- 358 (764)
..|+.-.-+.++...-...++...+.|.. |..|+++|.+.|..+++-.+- ..+=+...+++
T Consensus 841 ~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~va 919 (1666)
T KOG0985|consen 841 VDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVA 919 (1666)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEe
Confidence 11122222333444444455555555543 666666666666544332111 11101111111
Q ss_pred ------------CCCchhHHHHHHHHHHhcCCHHHHHHHH-----------HHHhhCC-----CCcchHHHHHHHhcCCC
Q 004273 359 ------------LKPQDSTIATLSVECSKALELDLAEALL-----------DQISRCT-----NPKPFSAFLAACDTMDK 410 (764)
Q Consensus 359 ------------~~~~~~~~~~li~~~~~~g~~~~A~~~~-----------~~~~~~~-----~~~~~~~li~~~~~~g~ 410 (764)
+.-..+.|....+.+.+..+.+.-.+++ ++..... |+..-+..+.++...+-
T Consensus 920 YerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL 999 (1666)
T KOG0985|consen 920 YERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL 999 (1666)
T ss_pred ecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence 0111222333444444444444333333 2222211 55566677788888888
Q ss_pred HHHHHHHHHHHhhccCCCHH-----hHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 004273 411 PERAIKIFAKMRQKLRPDIR-----TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485 (764)
Q Consensus 411 ~~~a~~l~~~m~~~~~p~~~-----t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (764)
+.+-+++++++.- .|+.+ .-+.++-...+.. . .++.++-+.+-... .|+ +..
T Consensus 1000 p~eLIELLEKIvL--~~S~Fse~~nLQnLLiLtAikad-~-------------trVm~YI~rLdnyD-a~~------ia~ 1056 (1666)
T KOG0985|consen 1000 PNELIELLEKIVL--DNSVFSENRNLQNLLILTAIKAD-R-------------TRVMEYINRLDNYD-APD------IAE 1056 (1666)
T ss_pred cHHHHHHHHHHhc--CCcccccchhhhhhHHHHHhhcC-h-------------HHHHHHHHHhccCC-chh------HHH
Confidence 8888888888764 22222 2222222111111 0 11111111110000 011 111
Q ss_pred HHhccCcHHHHHHHHHhcCC------------------------CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 004273 486 ALGAEGMIRELIQYFCDSKT------------------------PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541 (764)
Q Consensus 486 ~~~~~g~~~~a~~~~~~~~~------------------------~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~ 541 (764)
.....+.+++|..+|++... -.....|+.+..+-.+.|...+|++-|-+ .
T Consensus 1057 iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------a 1130 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------A 1130 (1666)
T ss_pred HHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------c
Confidence 22223334444444432100 01234788888888888888888877644 2
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004273 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621 (764)
Q Consensus 542 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 621 (764)
-|+..|.-+++.+.+.|.+++-.+++....+..-.|.+. +.||-+|++.+++.+-++++. .||......+-
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vG 1201 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVG 1201 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHh
Confidence 477889999999999999999999999888877677665 478999999999888777653 58888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 004273 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672 (764)
Q Consensus 622 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 672 (764)
+-|...|.++.|.-+|... ..|..|...+...|++..|...-
T Consensus 1202 drcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888887766543 34555666667777776665443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.2e-07 Score=90.52 Aligned_cols=349 Identities=11% Similarity=0.070 Sum_probs=192.9
Q ss_pred hhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccC------CCCcchHHHHHHHhhCCCChh---HHHH
Q 004273 38 RTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHH------SLGADDFFHILNYCARSPDPL---FVME 108 (764)
Q Consensus 38 r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~---~a~~ 108 (764)
|.|..-++..|+. ...+ +.-++..+++++|-+.+.++...+. +-+...++-+-...+++.+.- ..-.
T Consensus 159 rvyrRYLk~~P~~-~eey---ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvda 234 (835)
T KOG2047|consen 159 RVYRRYLKVAPEA-REEY---IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDA 234 (835)
T ss_pred HHHHHHHhcCHHH-HHHH---HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHH
Confidence 6666667777775 3334 5667889999999999988874421 222334555555555554332 2344
Q ss_pred HHHHHHHcCccccH--HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC--------------
Q 004273 109 TWRMMEEKEIGLNN--KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH-------------- 172 (764)
Q Consensus 109 ~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------------- 172 (764)
+++.+..+ -+|. ..|++|..-|.+.|.+++|..+|++..+. ..++.-|+.+.++|++-.
T Consensus 235 iiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~ 309 (835)
T KOG2047|consen 235 IIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEE 309 (835)
T ss_pred HHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 55555443 3443 47899999999999999999999987653 123334555555555321
Q ss_pred --------CHHHHHHHHHHHHhcCC-----------CCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCC------H
Q 004273 173 --------SMVHANLCLDLMDSRMV-----------GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS------I 227 (764)
Q Consensus 173 --------~~~~A~~~~~~m~~~g~-----------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~ 227 (764)
+++-.+.-|+.+...+. ..++.+|..-++ ...|+..+....|.+..+...|. .
T Consensus 310 ~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 310 SGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPG 387 (835)
T ss_pred ccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChh
Confidence 12222333333332211 011222222221 23455666677777777653332 2
Q ss_pred HhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccC
Q 004273 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 307 (764)
..|..+...|-..|+++.|..+|++..+...+.-.. ...+|-.....=.++.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d----------------------------La~vw~~waemElrh~ 439 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED----------------------------LAEVWCAWAEMELRHE 439 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH----------------------------HHHHHHHHHHHHHhhh
Confidence 357788888889999999999999988733322110 0246666667777788
Q ss_pred CHHHHHHHHHHHHHCCCCCCc--------------------ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHH
Q 004273 308 NSGLAEQLMLQMQSLGLQPSS--------------------HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367 (764)
Q Consensus 308 ~~~~a~~~~~~m~~~g~~p~~--------------------~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 367 (764)
+++.|+++.++... .|.. ..|...++.--..|-++....+|+.+.+..+. ++.+.-
T Consensus 440 ~~~~Al~lm~~A~~---vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~ 515 (835)
T KOG2047|consen 440 NFEAALKLMRRATH---VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIII 515 (835)
T ss_pred hHHHHHHHHHhhhc---CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 88888888777653 2222 12222233333445566666666666655543 222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC----CCcchHHHHHHHhcC---CCHHHHHHHHHHHhhccCCCH
Q 004273 368 TLSVECSKALELDLAEALLDQISRCT----NPKPFSAFLAACDTM---DKPERAIKIFAKMRQKLRPDI 429 (764)
Q Consensus 368 ~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~li~~~~~~---g~~~~a~~l~~~m~~~~~p~~ 429 (764)
.....+-.+.-++++.++++.-.... --..|++.+.-+.+. ..++.|..+|++..++++|..
T Consensus 516 NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~ 584 (835)
T KOG2047|consen 516 NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEH 584 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Confidence 22223334444555555555433221 112355544444331 245566666666555444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=83.92 Aligned_cols=49 Identities=35% Similarity=0.620 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004273 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625 (764)
Q Consensus 577 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 625 (764)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||++||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444455555555555555555555555554455555555555554443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-07 Score=91.56 Aligned_cols=133 Identities=11% Similarity=0.039 Sum_probs=88.9
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-CCCCCCHHHHHHHH
Q 004273 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR-DGFYPQTMTYTALI 586 (764)
Q Consensus 508 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~p~~~~~~~li 586 (764)
++..-.+++.-+.+.|+.++|.++..+..+.+..|+..+ +-.+.+.++.+.-.+..+.-.+ .+-.| -.+.+|.
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG 335 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLG 335 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHH
Confidence 344455566677778888888888888777766665222 2234555666666666655443 33333 5677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004273 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648 (764)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 648 (764)
..|.+.+.+.+|.+.|+... ...|+..+|+.+..++.+.|+..+|.++.++.+..-..|+
T Consensus 336 ~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 336 RLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888665 3467888888888888888888888887777664433343
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-09 Score=102.67 Aligned_cols=203 Identities=14% Similarity=-0.013 Sum_probs=167.7
Q ss_pred hhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHH
Q 004273 50 SISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMM 129 (764)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 129 (764)
.....+..+...+...|++++|++.+++..... +.+...+..+...+...|+++.|.+.+++..+.+ +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 334556667788899999999999999988765 3456677888889999999999999999999875 44667888889
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccCh
Q 004273 130 QALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
..+...|++++|.+.|++..+....+.....+..+...+...|++++|...|+........ +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 9999999999999999998753222233456777888899999999999999998876422 456788888889999999
Q ss_pred hHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
++|...++...+..+.+...+..+...+...|+.+.|..+.+.+.+
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999887666778888888999999999999999888765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.9e-07 Score=83.97 Aligned_cols=448 Identities=12% Similarity=0.088 Sum_probs=234.5
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHH-HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFH-ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
+..+..+.++..|+.+++--...+.. ..+.... +..++...|++++|...+..+.... .++...+-.|.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 66778888999999988776544321 1222333 3445557799999999998887754 4555555555555555688
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 004273 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
+.+|..+-....+ +...-..|...--+.++-++-..+-+.+.+. ..---+|.+..-..-.+.+|.+++.
T Consensus 107 Y~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 8888887664431 2223334444455667766666655554432 1112233333444556777888887
Q ss_pred HHHccCCCCHHhHHHHHH-HhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhH
Q 004273 218 DYIKHYSLSIFSLRKFVW-SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 218 ~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
.+... .|.-...|..+. +|.+.+-.+.+.++++-..+ -.||.+ .+-
T Consensus 176 rvL~d-n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~--q~pdSt------------------------------iA~ 222 (557)
T KOG3785|consen 176 RVLQD-NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR--QFPDST------------------------------IAK 222 (557)
T ss_pred HHHhc-ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH--hCCCcH------------------------------HHH
Confidence 77653 233334443333 55677777777777776665 234431 233
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCchhHHHHHHH
Q 004273 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS-----DRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 297 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 371 (764)
|.......+.=+-..|.+-.+++...+-. . |. .+.-+++ -++-+.|++++--+.+. .|. .-..|+-
T Consensus 223 NLkacn~fRl~ngr~ae~E~k~ladN~~~--~--~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~i 293 (557)
T KOG3785|consen 223 NLKACNLFRLINGRTAEDEKKELADNIDQ--E--YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLII 293 (557)
T ss_pred HHHHHHHhhhhccchhHHHHHHHHhcccc--c--ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhhee
Confidence 33333333322222333334444433211 0 11 1111222 23445566665554432 121 1223444
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHH--hcCCC-------HHHHHHHHHHHhhccCCCHHhHHHHHHHhcCC
Q 004273 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAAC--DTMDK-------PERAIKIFAKMRQKLRPDIRTYELLFSLFGNV 442 (764)
Q Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~--~~~g~-------~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~ 442 (764)
.|.+.+++++|..+.+.+... ..|.-++.+. ...|+ ..-|.+.|+-.
T Consensus 294 YyL~q~dVqeA~~L~Kdl~Pt---tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV--------------------- 349 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDPT---TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV--------------------- 349 (557)
T ss_pred eecccccHHHHHHHHhhcCCC---ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh---------------------
Confidence 566666666666666665422 2233333322 12221 12222222221
Q ss_pred CCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHH-HHHHHHHHhccCcHHHHHHHHHhcC---CCCChhhHHHHHHH
Q 004273 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS-MKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHS 518 (764)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~li~~ 518 (764)
-..+..-|... --++.+.+.-..++++++-.++... ...|...+| +..+
T Consensus 350 --------------------------G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQA 402 (557)
T KOG3785|consen 350 --------------------------GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQA 402 (557)
T ss_pred --------------------------cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHH
Confidence 11222111111 1123333333444555554443331 223344443 6678
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHccCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHH
Q 004273 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA-LIKILLDYGDFD 596 (764)
Q Consensus 519 ~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~-li~~~~~~g~~~ 596 (764)
++..|++.+|+++|-++....++ |..+|.+++ ++|.+.+.++.|+.++-.+. -+.+..+.-. +..-|-+++.+-
T Consensus 403 k~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999877655444 566666554 57778888888877664442 2233333333 345567788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH
Q 004273 597 EALNLLDLVSLEGIPHDVLLYN 618 (764)
Q Consensus 597 ~A~~~~~~m~~~~~~p~~~~~~ 618 (764)
-|-+.|+.+.. ..|++.-|.
T Consensus 479 yaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 479 YAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred HHHHhhhHHHc--cCCCccccC
Confidence 88888887763 467776664
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-09 Score=100.88 Aligned_cols=229 Identities=10% Similarity=0.083 Sum_probs=184.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH-HHHHHH
Q 004273 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE-LLKLAV 204 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~ 204 (764)
+.+...|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-++|.+-.+++.|+.+|.+-.+. .|..+||.. +.+.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 57888889999999999999877654 355668888999999999999999999887774 577777653 556677
Q ss_pred hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCC
Q 004273 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (764)
..++.+.|.++|+...+..+.++.+..++...|.-.++++.|++.+.++.+.|+....
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe---------------------- 359 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE---------------------- 359 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH----------------------
Confidence 7889999999999999988888888888888888899999999999999998887765
Q ss_pred cccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc--cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 004273 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH--TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362 (764)
Q Consensus 285 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 362 (764)
.|+.+.-+|.-.+++|-++.-|.+....--.|+.. .|-.+-...+..||+..|.+.|+.....+.. +
T Consensus 360 ----------Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h 428 (478)
T KOG1129|consen 360 ----------LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-H 428 (478)
T ss_pred ----------HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-h
Confidence 88888888889999999999998887654445443 4666666677888999999999888877655 5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 004273 363 DSTIATLSVECSKALELDLAEALLDQISRC 392 (764)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 392 (764)
...++.|.-.-.+.|+++.|..+++.....
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 566777777777888888888888777654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.9e-08 Score=96.73 Aligned_cols=324 Identities=11% Similarity=-0.055 Sum_probs=189.0
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCC-cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004273 58 QIVDALCRGERSRASHLLLNLGHAHHSLG-ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 136 (764)
....|-++|.+++|++.|.+.++.. |+ +.-|.....+|...|+++.+.+-....++.+ +.-+..+..-.+++-..|
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhc
Confidence 3455667899999999999999875 77 5557777788889999999999999888874 233557777788888889
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHh---------
Q 004273 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR--MVGKNEVTYTELLKLAVW--------- 205 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~--------- 205 (764)
++++|+.=..-..-..++. |. .-..++.-..+.--...+.+- +... -+-|+.....+.+..+..
T Consensus 198 ~~~eal~D~tv~ci~~~F~-n~-s~~~~~eR~Lkk~a~~ka~e~---~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQ-NA-SIEPMAERVLKKQAMKKAKEK---LKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred cHHHHHHhhhHHHHhhhcc-cc-hhHHHHHHHHHHHHHHHHHHh---hcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 9888755332221111111 11 111111111111001111111 2211 122333222222222110
Q ss_pred ----------------cc---ChhHHHHHHHHHHcc--CCCC-----------HHhHHHHHHHhhccCCHHHHHHHHHHH
Q 004273 206 ----------------QK---NLSAVHEIWEDYIKH--YSLS-----------IFSLRKFVWSFTRLRDLKSAYETLQHM 253 (764)
Q Consensus 206 ----------------~~---~~~~a~~~~~~~~~~--~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 253 (764)
.+ .+..+.+.+.+-..+ ..++ ..+...-..-+.-.|+.-.|..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 00 122222222221111 1111 111111222234557777777777777
Q ss_pred HHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHH
Q 004273 254 VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333 (764)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 333 (764)
.+....++. .|--+...|.+..+.++.+..|......+ +-|+.+|..
T Consensus 353 I~l~~~~~~--------------------------------lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyH 399 (606)
T KOG0547|consen 353 IKLDPAFNS--------------------------------LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYH 399 (606)
T ss_pred HhcCcccch--------------------------------HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHh
Confidence 763333222 35566677788888888888888877655 225556655
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCH
Q 004273 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKP 411 (764)
Q Consensus 334 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~ 411 (764)
--....-.+++++|..=|++.+..... +...|-.+-.+.-|.++++++...|++...+. .+..||-....+...+++
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhH
Confidence 555556667788888888877776544 44555566666667788888888888877654 667788888888888888
Q ss_pred HHHHHHHHHHhh
Q 004273 412 ERAIKIFAKMRQ 423 (764)
Q Consensus 412 ~~a~~l~~~m~~ 423 (764)
+.|.+.|+....
T Consensus 479 d~A~k~YD~ai~ 490 (606)
T KOG0547|consen 479 DKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHHh
Confidence 888888887665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.7e-07 Score=88.93 Aligned_cols=271 Identities=9% Similarity=0.002 Sum_probs=167.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHH
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 374 (764)
....-..-+...+++.+..++++...+.. ++....+..=|.++...|+..+-..+=..+.+.-+. ...+|-++.-.|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHH
Confidence 34445566777888999999999888764 556666766777888888888777777777776544 5667777777777
Q ss_pred hcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh---c-cCCCHHhHHHHHHHhcCCCCchhh
Q 004273 375 KALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ---K-LRPDIRTYELLFSLFGNVNAPYEE 448 (764)
Q Consensus 375 ~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~-~~p~~~t~~~ll~~~~~~~~~~~~ 448 (764)
-.|+..+|++.|....... -...|-.+...|.-.|..+.|+..+...-+ | ..|.. |
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Y---------------- 385 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--Y---------------- 385 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--H----------------
Confidence 7888999999888876653 345688888888888888888887766544 1 11110 0
Q ss_pred chhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc-CC-CCChhhHHHHHHHHHHcCChh
Q 004273 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KT-PLGTPTYNTVLHSLVEAQESH 526 (764)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~ 526 (764)
+.--|.+.++++.|.++|.+. .. +.|+...+-+.-..-..+.+.
T Consensus 386 ----------------------------------lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 386 ----------------------------------LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred ----------------------------------HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhH
Confidence 112355556666666666553 22 233445554444444456666
Q ss_pred HHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004273 527 RAMEIFKQMKTC----G--IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600 (764)
Q Consensus 527 ~A~~l~~~m~~~----g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 600 (764)
+|..+|+..... + ..-...+++.|-.+|.+.+.+++|...++...... +-+..++.++.-.|...|+++.|.+
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHH
Confidence 666666655411 0 00123345555556666666666666666555542 3355556666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH
Q 004273 601 LLDLVSLEGIPHDVLLYNTILK 622 (764)
Q Consensus 601 ~~~~m~~~~~~p~~~~~~~li~ 622 (764)
.|.+.+ .++||..+-..++.
T Consensus 511 ~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 511 HFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHH--hcCCccHHHHHHHH
Confidence 666554 44555544444444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-05 Score=83.31 Aligned_cols=314 Identities=11% Similarity=-0.024 Sum_probs=177.5
Q ss_pred cCCcchHHHHHHHhhhccCCCCcchHHHHHHHhh---CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHH
Q 004273 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCA---RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEA 141 (764)
Q Consensus 65 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 141 (764)
.++.+.++.-+......+.+.++.++..+...+. -.++.+++ ++-.....-..|....+.+++.-.
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm--------- 308 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM--------- 308 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH---------
Confidence 4666777777777776666666666665554333 22444444 222222221222222222211110
Q ss_pred HHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc
Q 004273 142 SNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
-.+.++.. ..+.-|...|..|.-++.+.|+++.+.+.|++....-+ -....|..+-..+...|.-..|..+++...+
T Consensus 309 -~~~~k~r~-~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 309 -LLLRKLRL-KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred -HHHHHHHH-hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 00111110 11223455666666677777777777777777654322 2445566666666677777777777766665
Q ss_pred cC--CCCHHhHHHHHHHhh-ccCCHHHHHHHHHHHHHhh--hcccchhcccccccccccccCCCccCCcccchhhhHhhH
Q 004273 222 HY--SLSIFSLRKFVWSFT-RLRDLKSAYETLQHMVALA--MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 222 ~~--~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
.. ++|+..+...-..|. +.+..++++.+-.++.... ..... . ...|
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l-~----------------------------~~~~ 436 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHL-K----------------------------PRGY 436 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhh-h----------------------------hhHH
Confidence 32 444444444444444 3355555555555554411 11110 0 0234
Q ss_pred HHHHHHHHcc-----------CCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchh
Q 004273 297 SDVIHACGRT-----------QNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364 (764)
Q Consensus 297 ~~li~~~~~~-----------g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 364 (764)
..+.-+|... ....++++.+++..+.+ -.|++.-|-+ --++..++++.|.+..++..+.+..-+..
T Consensus 437 l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~ 514 (799)
T KOG4162|consen 437 LFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAK 514 (799)
T ss_pred HHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHH
Confidence 3443333321 22457888888887765 2333333333 34667889999999999999987777888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004273 365 TIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
.+..|.-.+...+++.+|+.+.+...... |-.....-+..-...++.++++.....+..
T Consensus 515 ~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~ 575 (799)
T KOG4162|consen 515 AWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA 575 (799)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH
Confidence 89888888999999999999998876552 222222223344457888888888887765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.6e-06 Score=83.53 Aligned_cols=187 Identities=12% Similarity=0.089 Sum_probs=114.0
Q ss_pred HHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHH--cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 004273 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE--AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560 (764)
Q Consensus 483 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 560 (764)
++.+|. +..+.+.++-...........+.+++....+ ...+.+|.+++...-+....-.....-.++......|++
T Consensus 315 lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 315 LLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 444443 3344455544443222223344444443322 234777888887776653222234555666677888999
Q ss_pred hHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHH
Q 004273 561 KSASALVS--------MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE--GIPHDVL----LYNTILKKACE 626 (764)
Q Consensus 561 ~~a~~~~~--------~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~----~~~~li~~~~~ 626 (764)
+.|.+++. .+.+.+..|. +...++..+.+.++.+-|..++.+...- .-.+... ++.-+...-.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 99999998 5555555554 4556777888888777777776665421 1122223 33333444457
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004273 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 627 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
+|+-++|..+++++.+. ..+|..+...++.+|++. +.+.|..+-+.+
T Consensus 471 ~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred cCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 89999999999999963 356788888888888876 366666655544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-08 Score=109.63 Aligned_cols=183 Identities=8% Similarity=-0.112 Sum_probs=94.2
Q ss_pred CcchHHHHHHHhhhccCCCCcchHHHHHHHhh---------CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004273 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCA---------RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
.+++|+.+|++..+.. |-+...|..+..++. ..++++.|...+++..+.+ +.+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 3456666666666544 112223333322221 1233556666666666654 3345555556566666666
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 004273 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
+++|...|++..+.+ +.+...+..+...+...|++++|+..++...+..+. +...+..++..+...|++++|...++
T Consensus 354 ~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 666666666665432 222335555666666666666666666666654322 11122222333444555666666665
Q ss_pred HHHccCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004273 218 DYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 218 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
+..+..+| ++..+..+..++...|+.++|...+.++.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 55544322 33445555555556666666666655544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-08 Score=96.16 Aligned_cols=131 Identities=15% Similarity=0.023 Sum_probs=65.2
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
....+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 34455666666666666777666666664432 223445555666666666666666666665554321 233344444
Q ss_pred HHHHhccChhHHHHHHHHHHcc--CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004273 201 KLAVWQKNLSAVHEIWEDYIKH--YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
..+...|++++|.+.++...+. .+.....+..+..++...|+++.|...|++..
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRAL 162 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444445555555544444432 11222233333444444444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.9e-08 Score=107.31 Aligned_cols=244 Identities=10% Similarity=-0.016 Sum_probs=140.4
Q ss_pred CHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHh---------ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 004273 137 YLEEASNLIYFLGERYGIYPI-LPVYNSFLGACA---------KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
++++|..+|++..+.+ |+ ...|..+..+|. ..+++++|...+++..+..+. +..++..+-..+...
T Consensus 276 ~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 4567777777776443 33 234444443332 224467777777777765422 455566666666677
Q ss_pred cChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcc
Q 004273 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
|++++|...+++..+..|.+...+..+..++...|++++|...+++..+ ..|+.+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~----------------------- 406 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRA----------------------- 406 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCh-----------------------
Confidence 7777777777777777677777777777777777777777777777776 444431
Q ss_pred cchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhH
Q 004273 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 365 (764)
..+..++..+...|++++|...+++..... .|+. ..+..+..++...|+.++|...+..+...... +...
T Consensus 407 -------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~ 477 (553)
T PRK12370 407 -------AAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIA 477 (553)
T ss_pred -------hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHH
Confidence 122233444555677777777777766542 2333 23455556666777777777777776544221 2223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004273 366 IATLSVECSKALELDLAEALLDQISRCT----NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
.+.+...|...| +.|...++.+.+.. ....+ +-..|.-.|+.+.+..+ +++.+
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 344445556555 35555555554422 11222 23334444555555555 55554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-08 Score=93.72 Aligned_cols=226 Identities=9% Similarity=-0.052 Sum_probs=136.2
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004273 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
+...|.+.|-+.+|...|+.-.+. .|-++||..|-++|.+...+..|+.++.+-+.. ++-|+....-+.+.+...++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 445566667777777777666554 356666766777777777777777766666554 23344444555666666677
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 004273 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
.++|.+++....+..+ .++.....+..+|.-.++++-|+..|+++.+-|+. +...|..+--+|.-.+.++-++..|.
T Consensus 306 ~~~a~~lYk~vlk~~~--~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHP--INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcCC--ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 7777777776654432 24445555555666667777777777777776655 55556665555666666666666666
Q ss_pred HHHcc---CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHh
Q 004273 218 DYIKH---YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294 (764)
Q Consensus 218 ~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (764)
..... ...-..+|..+.......||+..|.+.|.-....+-... .
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~--------------------------------e 430 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG--------------------------------E 430 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH--------------------------------H
Confidence 66543 222234566666666666666666666666554221111 3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
++|.|.-.-.+.|++++|..++.....
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 666666666666666666666665544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.9e-06 Score=86.65 Aligned_cols=305 Identities=12% Similarity=-0.006 Sum_probs=185.8
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhh-hHHHHHHHhc-
Q 004273 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPV-YNSFLGACAK- 170 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~li~~~~~- 170 (764)
....+...|+++.|++.++.-... +.............|.+.|+.++|..++..+.+++ |+... |..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhh
Confidence 334556778888888888764443 34445566777888888888888888888887654 44444 4444444422
Q ss_pred ----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChh-HHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHH
Q 004273 171 ----LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS-AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 171 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
..+.+....+|+++... -|...+...+.-.+.....+. .+..++....+.. -+.+++.|-..|......+-
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg--vPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG--VPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHcChhHHHH
Confidence 23567778888877765 344444433332232212221 2233333333222 33455666666665555555
Q ss_pred HHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004273 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 246 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 325 (764)
...++....... ..+.. +.. .............|++.-+...|-..|++++|++++++.++. .
T Consensus 162 i~~l~~~~~~~l-~~~~~--------~~~------~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--t 224 (517)
T PF12569_consen 162 IESLVEEYVNSL-ESNGS--------FSN------GDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--T 224 (517)
T ss_pred HHHHHHHHHHhh-cccCC--------CCC------ccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--C
Confidence 555555554321 11100 000 000111111222267777788888888888888888888876 4
Q ss_pred CCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCc-------
Q 004273 326 PSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPK------- 396 (764)
Q Consensus 326 p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~------- 396 (764)
|+. ..|..-.+.+-..|++.+|.+.++..+..+.. |...-+..+..+.++|++++|.+++......+ ++.
T Consensus 225 Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 225 PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 553 45666677788888888888888888887776 77777788888888888888888888876653 111
Q ss_pred -ch--HHHHHHHhcCCCHHHHHHHHHHHhh
Q 004273 397 -PF--SAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 397 -~~--~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
.| .....+|.+.|++..|+..|..+.+
T Consensus 304 c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 304 CMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12 2345667777777777777766643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-05 Score=80.51 Aligned_cols=478 Identities=12% Similarity=0.033 Sum_probs=254.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004273 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 133 (764)
.+..-+..+..++++++|.....++...+ +-+...+..-+-+..+.+.++.|+.+.+.-.... ..+.+. +=.+||
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~---fEKAYc 88 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF---FEKAYC 88 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh---HHHHHH
Confidence 34445666788999999999999999876 4555667777778888899999985544322110 112221 234444
Q ss_pred --ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhccChh
Q 004273 134 --KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA-VWQKNLS 210 (764)
Q Consensus 134 --~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~ 210 (764)
+.+..++|+..++... + .+..+...=...+-+.|++++|+++|+.+.+.+.. .+...+.+- ...+-..
T Consensus 89 ~Yrlnk~Dealk~~~~~~-~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLD-R----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHcccHHHHHHHHhccc-c----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhh
Confidence 7899999999988432 1 23335566667788999999999999999776432 222222211 1100001
Q ss_pred HHHHHHHHHHccCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccch
Q 004273 211 AVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289 (764)
Q Consensus 211 ~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (764)
.+. +.+ .....+. +-..+......+...|++..|+++++...+.+...-. .+.. ..+....
T Consensus 160 ~~~-~~q-~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~------~~d~----------~eEeie~ 221 (652)
T KOG2376|consen 160 QVQ-LLQ-SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLE------DEDT----------NEEEIEE 221 (652)
T ss_pred hHH-HHH-hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhc------cccc----------chhhHHH
Confidence 111 111 1111221 2223334455677899999999999998553322100 0000 0000001
Q ss_pred hhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH---HHhcCChhHH--HHHHHHHHHCCCCCchh
Q 004273 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA---IVSDRGLRNG--MEVLKIMQQNNLKPQDS 364 (764)
Q Consensus 290 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~---~~~~~~~~~a--~~~~~~m~~~~~~~~~~ 364 (764)
.+ ...---|..++-..|+.++|..++...+... .+|........+- +....++... +..++.....
T Consensus 222 el-~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~------- 292 (652)
T KOG2376|consen 222 EL-NPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK------- 292 (652)
T ss_pred HH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH-------
Confidence 11 0122234556777899999999999998875 3455333332222 2222222221 1111111100
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCC
Q 004273 365 TIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNA 444 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~ 444 (764)
..+.++..|..-... ....-+.++..|.. ..+.+.++..... +..|. +.+.+++..+...
T Consensus 293 -------------l~~~~l~~Ls~~qk~-~i~~N~~lL~l~tn--k~~q~r~~~a~lp-~~~p~-~~~~~ll~~~t~~-- 352 (652)
T KOG2376|consen 293 -------------LAEFLLSKLSKKQKQ-AIYRNNALLALFTN--KMDQVRELSASLP-GMSPE-SLFPILLQEATKV-- 352 (652)
T ss_pred -------------hHHHHHHHHHHHHHH-HHHHHHHHHHHHhh--hHHHHHHHHHhCC-ccCch-HHHHHHHHHHHHH--
Confidence 001111111111110 11111233333332 2233333322221 22232 2333333322111
Q ss_pred chhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHh---cCCCCChhhHHHHHHHHHH
Q 004273 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVE 521 (764)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~~li~~~~~ 521 (764)
+......+.+++.. ..+....++--.++.....
T Consensus 353 --------------------------------------------~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 353 --------------------------------------------REKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred --------------------------------------------HHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 00011222222221 1122223455556677788
Q ss_pred cCChhHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC--CCCCCHH----HHHHHHH
Q 004273 522 AQESHRAMEIFK--------QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD--GFYPQTM----TYTALIK 587 (764)
Q Consensus 522 ~~~~~~A~~l~~--------~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~p~~~----~~~~li~ 587 (764)
.|+++.|++++. .+.+.+..|-. ...+...+.+.++-+.|-.++...+.. .-.+... ++.-+..
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 899999999888 55665555544 445666677777777788887776642 1112222 3333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004273 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 640 (764)
.-.+.|+.++|..+++++.... ++|..+...++.+|++. +.+.|+.+-..+
T Consensus 467 f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 4467899999999999998643 67888999999999877 778887765543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.8e-07 Score=94.62 Aligned_cols=97 Identities=7% Similarity=0.081 Sum_probs=47.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhH--------H
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST--------I 366 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--------~ 366 (764)
.|..-.+.+-+.|++++|.+.++..++... -|...-+-....+.+.|++++|.+++....+.+..|-... .
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 444455555555555555555555554432 1333334444444555555555555555544433221111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 004273 367 ATLSVECSKALELDLAEALLDQISRC 392 (764)
Q Consensus 367 ~~li~~~~~~g~~~~A~~~~~~~~~~ 392 (764)
.....+|.+.|++..|++.|..+.+.
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 23445666667666666666655543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-05 Score=81.71 Aligned_cols=400 Identities=10% Similarity=0.040 Sum_probs=190.8
Q ss_pred CChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHH
Q 004273 101 PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180 (764)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 180 (764)
..+..|+.+++.+.... .-...|..+...|+..|+++.|.++|.+.. .++--|..|.++|+++.|.++
T Consensus 746 kew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHHHH
Confidence 33444444444444332 122234455555555555555555554321 234455555666666655555
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcc
Q 004273 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG 260 (764)
Q Consensus 181 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 260 (764)
-.+.. |+......|-+-..-.-..|.+.+|+++|-.+. .|+ ..|.+|-+.|..+..+++.++-- |
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~---~p~-----~aiqmydk~~~~ddmirlv~k~h-----~ 878 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---EPD-----KAIQMYDKHGLDDDMIRLVEKHH-----G 878 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---Cch-----HHHHHHHhhCcchHHHHHHHHhC-----h
Confidence 44332 223333334333333444555555555443221 111 12334444454444444433321 1
Q ss_pred cchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 004273 261 KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340 (764)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 340 (764)
+ ....|.-.+..-+-..|+...|..-|-+..+ |.+.++.|-.
T Consensus 879 d-----------------------------~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~ 920 (1636)
T KOG3616|consen 879 D-----------------------------HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKA 920 (1636)
T ss_pred h-----------------------------hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhh
Confidence 1 1112444555666667777777666644332 3444455555
Q ss_pred cCChhHHHHHHHH--------------HHHCCCCCchhH------HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHH
Q 004273 341 DRGLRNGMEVLKI--------------MQQNNLKPQDST------IATLSVECSKALELDLAEALLDQISRCTNPKPFSA 400 (764)
Q Consensus 341 ~~~~~~a~~~~~~--------------m~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 400 (764)
.+-|++|.++-+. ....|-..-+.. ...-++..+..+.++-|.++-+-..+.......-.
T Consensus 921 s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk 1000 (1636)
T KOG3616|consen 921 SELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLK 1000 (1636)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhH
Confidence 5555555444221 111111100001 11223333444555555555444333323333344
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHH
Q 004273 401 FLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480 (764)
Q Consensus 401 li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (764)
+...+-..|++++|.+-|-+..+ . .||++-- |..... .+.....+.|.+|..
T Consensus 1001 ~a~~ledegk~edaskhyveaik---l--ntynitw--cqavps------------------rfd~e~ir~gnkpe~--- 1052 (1636)
T KOG3616|consen 1001 LAMFLEDEGKFEDASKHYVEAIK---L--NTYNITW--CQAVPS------------------RFDAEFIRAGNKPEE--- 1052 (1636)
T ss_pred HhhhhhhccchhhhhHhhHHHhh---c--ccccchh--hhcccc------------------hhhHHHHHcCCChHH---
Confidence 44556667888888777766654 1 1222111 110000 011234556666643
Q ss_pred HHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 004273 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560 (764)
Q Consensus 481 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 560 (764)
-+.++.+..++..|.++-+..-...-...|+--..+-...|++.+|..++-+.. +|+. .++.|...+.|
T Consensus 1053 --av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllran----kp~i-----~l~yf~e~~lw 1121 (1636)
T KOG3616|consen 1053 --AVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDI-----ALNYFIEAELW 1121 (1636)
T ss_pred --HHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecC----CCch-----HHHHHHHhccC
Confidence 346788888999888887654222222344444455556677777776654433 4553 34555556666
Q ss_pred hHHHHHHHHH------------H----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004273 561 KSASALVSMM------------V----RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605 (764)
Q Consensus 561 ~~a~~~~~~~------------~----~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 605 (764)
..|+++-+.. . +.| ...+..|..-..-+-+.|++.+|...+-++
T Consensus 1122 ~dalri~kdylp~q~a~iqeeyek~~~k~g-argvd~fvaqak~weq~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1122 PDALRIAKDYLPHQAAAIQEEYEKEALKKG-ARGVDGFVAQAKEWEQAGDWRKAVDALLKI 1181 (1636)
T ss_pred hHHHHHHHhhChhHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHhcccHHHHHHHHhhh
Confidence 6665554322 1 122 223445555566667777877777766554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.4e-07 Score=89.01 Aligned_cols=282 Identities=12% Similarity=0.017 Sum_probs=222.4
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
++...-.-..-+-..+++.+..++++.+.+.++..++ .+..-|..+...|+..+-..+=..+.+.- +-...+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~--~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLP--CLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcc--hHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 3444445556667789999999999999888765555 66666778888999888888888888763 33678999999
Q ss_pred HHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCC
Q 004273 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
.-|...|..++|.+.|.+...-.+.-...|-.+.+.|+-.|..+.|+..+....+ .-|....+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP--------------- 382 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLP--------------- 382 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcch---------------
Confidence 9899999999999999999877777778899999999999999999999998877 22222100
Q ss_pred ccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 004273 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN--- 357 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--- 357 (764)
..| +.--|.+.++.+.|.+.|.+..... +-|+..++-+--..-..+.+.+|..+|+.....
T Consensus 383 -------------~LY--lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 383 -------------SLY--LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred -------------HHH--HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 133 4456788999999999999987653 335666666666666788999999999887631
Q ss_pred -C--CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhH
Q 004273 358 -N--LKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTY 432 (764)
Q Consensus 358 -~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~ 432 (764)
+ ..-...+++.|...|.+.+..++|+..++...... +..++.++.-.|...|+++.|.+.|.+-.. +.||..+.
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~-l~p~n~~~ 525 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA-LKPDNIFI 525 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh-cCCccHHH
Confidence 1 11256678899999999999999999999976543 888899999999999999999999998775 88999888
Q ss_pred HHHHHHh
Q 004273 433 ELLFSLF 439 (764)
Q Consensus 433 ~~ll~~~ 439 (764)
..++..+
T Consensus 526 ~~lL~~a 532 (611)
T KOG1173|consen 526 SELLKLA 532 (611)
T ss_pred HHHHHHH
Confidence 8887644
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-07 Score=95.66 Aligned_cols=241 Identities=12% Similarity=0.015 Sum_probs=172.0
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHc-----C-ccccHH-HHHHHHHHHHccCCHHHHHHHHHHHhhh----cC-C
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEK-----E-IGLNNK-CYLLMMQALCKGGYLEEASNLIYFLGER----YG-I 154 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~ 154 (764)
..+...+...|...|+++.|..+++..++. | ..|.+. ..+.+...|...+++++|..+|+++..- .| .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666889999999999999999988765 2 134444 3445778899999999999999987531 11 1
Q ss_pred CCC-hhhhHHHHHHHhccCCHHHHHHHHHHHHhc-----CC-CCChh-hHHHHHHHHHhccChhHHHHHHHHHHcc----
Q 004273 155 YPI-LPVYNSFLGACAKLHSMVHANLCLDLMDSR-----MV-GKNEV-TYTELLKLAVWQKNLSAVHEIWEDYIKH---- 222 (764)
Q Consensus 155 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 222 (764)
.|. ..+++.|...|.+.|++++|...++...+- |. .|... -++.+...|...+++++|..++....+-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 222 247888888999999999998888776442 21 22333 3455666788899999999999887762
Q ss_pred CCCC----HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcc----cchhcccccccccccccCCCccCCcccchhhhHh
Q 004273 223 YSLS----IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG----KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294 (764)
Q Consensus 223 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (764)
..++ ..+++.|...|.+.|++++|.++|+++....-.. +..+ ..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~----------------------------~~ 410 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV----------------------------GK 410 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh----------------------------hH
Confidence 2333 3589999999999999999999999988643211 1111 14
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH----CCC-CCCc-ccHHHHHHHHHhcCChhHHHHHHHHHH
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQS----LGL-QPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~-~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~ 355 (764)
.++.+...|.+.++++.|.++|.+-.. .|. .||. .+|..|...|...|+++.|.++...+.
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 777888889999999999988877543 221 2232 356777777777777777777776654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.8e-07 Score=81.41 Aligned_cols=205 Identities=15% Similarity=-0.019 Sum_probs=172.4
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH
Q 004273 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (764)
+.........+...|...|+...|..-+++..+.+ |-+..++..+...|.+.|+.+.|.+-|++.++.. +-+-.+.|.
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNN 108 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhh
Confidence 33445556667888999999999999999999987 3455668888889999999999999999999875 456678999
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcc
Q 004273 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
-...+|..|++++|...|++.........-..+|..+.-+..+.|+.+.|...|++..+.... ...+.-.+.....+.|
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAG 187 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcc
Confidence 999999999999999999998764333333458888998999999999999999999887433 4456778888899999
Q ss_pred ChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
++-.|..+++.......++..+.-..|..--..|+.+.+.+.=..+.+
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999988779999999999999999999999887777665
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=0.00018 Score=77.67 Aligned_cols=279 Identities=11% Similarity=0.035 Sum_probs=196.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhhccCCCC--cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004273 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLG--ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 132 (764)
....+.+++..+-+.+-+++++++.-.+...+ ....|.|+-...+. +...+.+..+++...+. |+ +....
T Consensus 987 vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~------ia~ia 1058 (1666)
T KOG0985|consen 987 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PD------IAEIA 1058 (1666)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hh------HHHHH
Confidence 33456778888889999999998875543332 23345555544443 45567777776655432 22 33445
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHH
Q 004273 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
...+-+++|..+|+... .+....+.||. .-++++.|.+.-+... ....|+.+.++-.+.+.+.+|
T Consensus 1059 i~~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred hhhhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 56677899999988652 24445555554 3467788877665543 456788898888888888888
Q ss_pred HHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhh
Q 004273 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
.+-|-+ ..|+..|..+++...+.|.+++-.+.+....+....|.
T Consensus 1124 ieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~------------------------------- 1167 (1666)
T KOG0985|consen 1124 IESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY------------------------------- 1167 (1666)
T ss_pred HHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-------------------------------
Confidence 776654 35778899999999999999999999888887665554
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHH
Q 004273 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 372 (764)
.=+.||-+|++.++..+..+++ .-||......+-+-|...+.++.|.-+|.. .+-|..|...
T Consensus 1168 --id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~T 1229 (1666)
T KOG0985|consen 1168 --IDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLAST 1229 (1666)
T ss_pred --chHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHH
Confidence 4467899999999987765544 247888888888889999999988887753 4456777777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHH
Q 004273 373 CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413 (764)
Q Consensus 373 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 413 (764)
+...|+++.|.+.-+... ++.+|..+-.+|...+.+.-
T Consensus 1230 LV~LgeyQ~AVD~aRKAn---s~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKAN---STKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred HHHHHHHHHHHHHhhhcc---chhHHHHHHHHHhchhhhhH
Confidence 888888888876655544 67788887777776665443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.6e-05 Score=76.81 Aligned_cols=218 Identities=11% Similarity=0.133 Sum_probs=131.6
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHH
Q 004273 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380 (764)
Q Consensus 301 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (764)
..+.+.|+++.|+.-|-+.. ...-.+.+....+.|.+|..+++.++..... ..-|..+.+-|+..|+++
T Consensus 714 ~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHH
Confidence 34455677777766664432 1233456677788899999999888876543 345677888899999999
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHH
Q 004273 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460 (764)
Q Consensus 381 ~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 460 (764)
.|+++|.+.. .++-.|..|.+.|+++.|.++-.+... .......|.+--.-+-..|.+.+++.++-.++.
T Consensus 783 ~ae~lf~e~~------~~~dai~my~k~~kw~da~kla~e~~~-~e~t~~~yiakaedldehgkf~eaeqlyiti~~--- 852 (1636)
T KOG3616|consen 783 IAEELFTEAD------LFKDAIDMYGKAGKWEDAFKLAEECHG-PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE--- 852 (1636)
T ss_pred HHHHHHHhcc------hhHHHHHHHhccccHHHHHHHHHHhcC-chhHHHHHHHhHHhHHhhcchhhhhheeEEccC---
Confidence 9999987654 356778889999999999888766542 233333443333333333443333333222111
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 004273 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540 (764)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~ 540 (764)
| ..-|.+|-+.|..++.+++..+.....-..|.-.+..-|-..|+...|.+-|-+..+
T Consensus 853 --------------p-----~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--- 910 (1636)
T KOG3616|consen 853 --------------P-----DKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--- 910 (1636)
T ss_pred --------------c-----hHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---
Confidence 1 124567777777777777766543322233444455556666777777666544322
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHH
Q 004273 541 PPNAATYNIMIDCCSIIRCFKSASALV 567 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~~~~~~~a~~~~ 567 (764)
|.+.++.|-.++.|++|.++-
T Consensus 911 ------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 911 ------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred ------HHHHHHHhhhhhhHHHHHHHH
Confidence 344455555556666655543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=0.00013 Score=77.04 Aligned_cols=248 Identities=10% Similarity=0.049 Sum_probs=143.4
Q ss_pred hhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHc-
Q 004273 38 RTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEK- 116 (764)
Q Consensus 38 r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 116 (764)
|.|-....|+|. ++....-..-|..-|+.+.|.+-.+.+... ..|..+.+.|.+..+.+-|.-.+-.|...
T Consensus 716 rdFvgle~Cd~~--TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aR 787 (1416)
T KOG3617|consen 716 RDFVGLENCDES--TRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNAR 787 (1416)
T ss_pred HHhcCccccCHH--HHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhh
Confidence 444444445444 333222233366678888888777666543 35777888888777777665555444321
Q ss_pred Cc--------cc-cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004273 117 EI--------GL-NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 117 ~~--------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
|. .+ +...--+ -.-...|.+++|+.++.+-+. |..|=+.|-..|.+++|.++-+.--+-
T Consensus 788 gaRAlR~a~q~~~e~eakvA--vLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRi 855 (1416)
T KOG3617|consen 788 GARALRRAQQNGEEDEAKVA--VLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRI 855 (1416)
T ss_pred hHHHHHHHHhCCcchhhHHH--HHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccce
Confidence 10 11 1112112 223456899999999987742 334445566789999999887653332
Q ss_pred CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc----------cCC----------CCHHhHHHHHHHhhccCCHHHHH
Q 004273 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK----------HYS----------LSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 188 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----------~~~----------~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
.+ ..||..-..-+...+|.+.|++.|++..- ..+ .|...|.-.....-..|+.+.|+
T Consensus 856 HL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 856 HL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred eh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 22 23555555556667788888777765421 111 23334444444555678888888
Q ss_pred HHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004273 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327 (764)
Q Consensus 248 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 327 (764)
.+|.... -|-++++..|-.|+.++|-++-++- -|
T Consensus 933 ~~Y~~A~----------------------------------------D~fs~VrI~C~qGk~~kAa~iA~es------gd 966 (1416)
T KOG3617|consen 933 SFYSSAK----------------------------------------DYFSMVRIKCIQGKTDKAARIAEES------GD 966 (1416)
T ss_pred HHHHHhh----------------------------------------hhhhheeeEeeccCchHHHHHHHhc------cc
Confidence 8888775 3445555566666666666555442 24
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHH
Q 004273 328 SHTYDGFIRAIVSDRGLRNGMEVLKIM 354 (764)
Q Consensus 328 ~~t~~~li~~~~~~~~~~~a~~~~~~m 354 (764)
......+.+.|-+.|++.+|..+|...
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444445556666666666666665544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6e-07 Score=89.51 Aligned_cols=218 Identities=11% Similarity=-0.081 Sum_probs=132.5
Q ss_pred CCcchHHHHHHHhhhccCCCC----cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHH
Q 004273 66 GERSRASHLLLNLGHAHHSLG----ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEA 141 (764)
Q Consensus 66 ~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 141 (764)
+..+.++.-+.++.... +.+ ...|..+...+...|+.+.|...|++..+.. +.+...|+.+...|...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566666666666432 122 2336666667777788888888888887764 44667788888888888888888
Q ss_pred HHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc
Q 004273 142 SNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
...|++..+.+ +-+..+|..+...+...|++++|++.|+...+. .|+..........+...++.++|.+.++....
T Consensus 118 ~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888776532 223456677777777788888888888887765 34332222222223445677888887766554
Q ss_pred cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhh-----hcccchhcccccccccccccCCCccCCcccchhhhHhhH
Q 004273 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA-----MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
...++...+ .+... ..|+...+ ..+..+.+.. +.|.. ..+|
T Consensus 194 ~~~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~------------------------------~ea~ 239 (296)
T PRK11189 194 KLDKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERL------------------------------CETY 239 (296)
T ss_pred hCCccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHH------------------------------HHHH
Confidence 433333322 22222 23444333 2444443210 01110 1467
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004273 297 SDVIHACGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 297 ~~li~~~~~~g~~~~a~~~~~~m~~~g 323 (764)
..+...+.+.|++++|...|++..+.+
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 777778888888888888888777654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-07 Score=97.82 Aligned_cols=249 Identities=11% Similarity=-0.000 Sum_probs=183.8
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhc--
Q 004273 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA-- 81 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~-- 81 (764)
|...-++..+...|..+|++++|. ..+.... +......|+...........+...|...+++++|+.+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~-~l~k~Al--~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAE-PLCKQAL--RILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHH-HHHHHHH--HHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 455567778999999999999999 6665543 44445566555545555666778899999999999999998643
Q ss_pred ---c--CCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHc-----Cc-cccHH-HHHHHHHHHHccCCHHHHHHHHHHHh
Q 004273 82 ---H--HSLGADDFFHILNYCARSPDPLFVMETWRMMEEK-----EI-GLNNK-CYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 82 ---~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~ 149 (764)
| .+....+++.|..+|.+.|++++|...++...+. |. .|.+. .++.+...++..+++++|..+++...
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 2 1222345788888899999999888777776542 21 23333 46677888999999999999988654
Q ss_pred hhcC--CCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHHhc----CC--CC-ChhhHHHHHHHHHhccChhHHHHHH
Q 004273 150 ERYG--IYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSR----MV--GK-NEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 150 ~~~~--~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~--~p-~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
+..- ..++. -+++.|...|...|++.+|.++|+..... +- .+ ....++.|-..|.+.+...+|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 3221 22222 37899999999999999999999987653 11 22 2346677888899999999999888
Q ss_pred HHHHc---c----CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 217 EDYIK---H----YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 217 ~~~~~---~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
..... . .+....+|..|..+|...|+++.|.++.+.+..
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 77653 1 233356899999999999999999999998874
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=0.00019 Score=75.76 Aligned_cols=52 Identities=10% Similarity=-0.052 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHCCCCC----CHhhHHHHHHHHHhcCChHHHHHHHHHHHHhhh
Q 004273 629 RIDVIEFIIEQMHQNKVQP----DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680 (764)
Q Consensus 629 ~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 680 (764)
|..+.+.-...|.+.-.-| -...|..|+..+....+|..|.+.+++|.++.-
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVP 1361 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCC
Confidence 4555555566666543333 234566677888888888888888888877643
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-06 Score=87.18 Aligned_cols=39 Identities=5% Similarity=-0.013 Sum_probs=26.5
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHH
Q 004273 396 KPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYEL 434 (764)
Q Consensus 396 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ 434 (764)
.+|..+...+.+.|++++|+..|++..+.-.||..-+..
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 456777777888888888888888777733345544443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.0003 Score=74.28 Aligned_cols=503 Identities=12% Similarity=0.039 Sum_probs=287.2
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHH---HHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004273 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ---ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
..++++.++.-+.....++.+.++.++..+-. .|...|+.+++ .++..+.+ ...|....+.+.+.-
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~e--s~i~Re~~~d~ilsl-------- 307 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEE--SLIPRENIEDAILSL-------- 307 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHh--hccccccHHHHHHHH--------
Confidence 44666677777777777766666666555433 34455666666 33333321 222332233322211
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.-.+.+++...+.-|...|..+.-+....|+++.+.+.|++......-....|+.+...|...|....|..+++.-..
T Consensus 308 --m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 308 --MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred --HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 112334444445668888888888889999999999999999988777888899999999999999999999988766
Q ss_pred hhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHH-ccCCHHHHHHHHHHHHH--CCC--CCCccc
Q 004273 256 LAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG-RTQNSGLAEQLMLQMQS--LGL--QPSSHT 330 (764)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~--~g~--~p~~~t 330 (764)
....|+++ ..+-..-..|. +.+.+++++++-.+... .+. ......
T Consensus 386 ~~~~ps~~------------------------------s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 386 KSEQPSDI------------------------------SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred cccCCCcc------------------------------hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 33334431 12222223333 34667777777666655 111 123344
Q ss_pred HHHHHHHHHhc----C-------ChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCc
Q 004273 331 YDGFIRAIVSD----R-------GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPK 396 (764)
Q Consensus 331 ~~~li~~~~~~----~-------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~ 396 (764)
|..+--+|... . ...++.+.+++..+.+.. |+.+.--+.--|+..++++.|.+...+...-+ ++.
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~ 514 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAK 514 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHH
Confidence 44444444421 1 134577778887776644 33333344446788899999999999887662 888
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHhh--ccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCC
Q 004273 397 PFSAFLAACDTMDKPERAIKIFAKMRQ--KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474 (764)
Q Consensus 397 ~~~~li~~~~~~g~~~~a~~l~~~m~~--~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (764)
.|..|.-.+...+++.+|+.+.+.... |. |......-++--...++.+++. +......++++... |
T Consensus 515 ~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l------~t~~~~L~~we~~~--~-- 582 (799)
T KOG4162|consen 515 AWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEAL------DTCIHKLALWEAEY--G-- 582 (799)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHH------HHHHHHHHHHHhhh--h--
Confidence 999999999999999999999887665 21 0000000000000011111111 00011111110000 0
Q ss_pred CcHHHHHHHHHHHhccCcHHHHHHHHHhcCC----CCCh-hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CCH---
Q 004273 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKT----PLGT-PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP--PNA--- 544 (764)
Q Consensus 475 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~--p~~--- 544 (764)
....++-....+.+..+.. ..+. .++..+..-.. -+.+.+..-.. |...-+. |+.
T Consensus 583 ------------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se~~-Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 583 ------------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSELK-LPSSTVLPGPDSLWY 647 (799)
T ss_pred ------------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcccccc-cCcccccCCCCchHH
Confidence 0000111111122211111 1111 12222221111 11111100000 2211112 221
Q ss_pred ---HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 004273 545 ---ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD-VLLYNTI 620 (764)
Q Consensus 545 ---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 620 (764)
..+......+.+.+..++|...+.+..+. .......|.-....+...|..++|.+.|..... +.|+ +.+..++
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Al 724 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHH
Confidence 12344455666778888887777666654 234556666666778888899999999888774 3554 5578888
Q ss_pred HHHHHHcCCHHHHHH--HHHHHHHCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004273 621 LKKACEKGRIDVIEF--IIEQMHQNKVQP-DPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 621 i~~~~~~g~~~~a~~--~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
...+.+.|+...|.. ++..+.+ +.| +...|..+-..+-+.|+.+.|.+.|+.-..
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 888889998777777 8888886 445 456677777788889999999988886443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-06 Score=76.79 Aligned_cols=196 Identities=8% Similarity=-0.094 Sum_probs=112.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccC
Q 004273 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 241 (764)
.-|.-+|.+.|+...|..-++...+..+. +..+|..+-..|.+.|+.+.|.+.|++..+-.+.+..+.|....-+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 33444556666666666666665554321 33455555555556666666666666666655666666666666666666
Q ss_pred CHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 242 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
.+++|...|++... .|.-... ..+|..+.-+..+.|+++.|.+.|++-.+
T Consensus 118 ~~~eA~q~F~~Al~---~P~Y~~~---------------------------s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 118 RPEEAMQQFERALA---DPAYGEP---------------------------SDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred ChHHHHHHHHHHHh---CCCCCCc---------------------------chhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 66666666666664 2221111 13666666666666777777776666665
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004273 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390 (764)
Q Consensus 322 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 390 (764)
... -...+.-.+.+...+.|++..|..+++.....+. ++....-..|..--+.|+.+.+-+.=.++.
T Consensus 168 ~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 168 LDP-QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred hCc-CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 431 1233445555566666666666666666666555 455555555555555566555554444433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.8e-05 Score=81.40 Aligned_cols=185 Identities=11% Similarity=-0.046 Sum_probs=135.5
Q ss_pred cchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004273 68 RSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYF 147 (764)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 147 (764)
...|+..|-+..+.++ --...|..|...|....|...|...|....+.+ ..+...+..+...|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 5566665555444432 122358888888887778888999999988876 45677888899999999999999998655
Q ss_pred HhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCH
Q 004273 148 LGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI 227 (764)
Q Consensus 148 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 227 (764)
..++.....-...|...--.|.+.++...|..-|+...+..+. |...|..+..+|...|.+..|.++|.++..-.|.+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 5443322112222333334467889999999999998887544 778899999999999999999999988877666666
Q ss_pred HhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 228 FSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
..--.....-+..|...+|...+..+..
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6655556667788999999988888765
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.4e-06 Score=76.18 Aligned_cols=313 Identities=14% Similarity=0.076 Sum_probs=208.2
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHH-HHHHHHHccC
Q 004273 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYL-LMMQALCKGG 136 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g 136 (764)
.+..+.+..+++.|++++..-.+.. +.+......|..+|-...++..|-+.++++-.. .|...-|. .-...+-+.+
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhc
Confidence 3545678889999999998887765 235566777777888889999999999998776 35444443 3356677889
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHH--HH--HhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHH
Q 004273 137 YLEEASNLIYFLGERYGIYPILPVYNSFL--GA--CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li--~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
.+.+|+++...|.+. |+ ..+..+ .+ .-..+++..+..+.++....| +..+.+..-....+.|+++.|
T Consensus 93 i~ADALrV~~~~~D~----~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN----PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred ccHHHHHHHHHhcCC----HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 999999999888542 22 222221 11 234688888888888766432 444554444455689999999
Q ss_pred HHHHHHHHcc-CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCC--cccch
Q 004273 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN--ALPVM 289 (764)
Q Consensus 213 ~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 289 (764)
.+-|....+- .-....+||..+.. .+.++.+.|++...++.++|++...-.+.. +.....+.....+ .+...
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIG----m~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIG----MTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCcc----ceeccCchhcccchHHHHHH
Confidence 9999999873 44445667766544 467899999999999999998866522211 1111111111111 11111
Q ss_pred hhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHH
Q 004273 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368 (764)
Q Consensus 290 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 368 (764)
.+ ...+|.-...+.+.|+++.|.+.+..|.-+. -..|++|...+.-.- -.+++....+-+.-+...++-| ..|+..
T Consensus 239 al-~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP-~ETFAN 315 (459)
T KOG4340|consen 239 AL-VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFP-PETFAN 315 (459)
T ss_pred HH-HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCC-hHHHHH
Confidence 11 2455655666778999999999999986443 356777766543221 2455666666667777766644 678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 004273 369 LSVECSKALELDLAEALLDQIS 390 (764)
Q Consensus 369 li~~~~~~g~~~~A~~~~~~~~ 390 (764)
++-.||+..-++.|-+++.+-.
T Consensus 316 lLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCc
Confidence 8888999988888888876644
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-05 Score=81.29 Aligned_cols=194 Identities=7% Similarity=-0.063 Sum_probs=90.4
Q ss_pred HHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCc
Q 004273 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (764)
.+...|++++|.+.++...+..+.+...+..+..++...|++++|...+++..+....+..
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~------------------- 183 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSM------------------- 183 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcc-------------------
Confidence 4445555555555555555554555555555556666666666666666665542111000
Q ss_pred cCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCcccH-H--HHHHHHHhcCChhHHHHH--HHHHH
Q 004273 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL-QPSSHTY-D--GFIRAIVSDRGLRNGMEV--LKIMQ 355 (764)
Q Consensus 282 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~-~--~li~~~~~~~~~~~a~~~--~~~m~ 355 (764)
.....|..+...+...|++++|..+|++...... .+..... + .++.-+...|....+.++ +....
T Consensus 184 ---------~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~ 254 (355)
T cd05804 184 ---------LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYA 254 (355)
T ss_pred ---------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 0001344555666666666666666666543211 0111100 1 112222223322222222 11111
Q ss_pred HCCCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----------CCcchHHHHHHHhcCCCHHHHHHHHHHHh
Q 004273 356 QNNLK--PQDSTIATLSVECSKALELDLAEALLDQISRCT-----------NPKPFSAFLAACDTMDKPERAIKIFAKMR 422 (764)
Q Consensus 356 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 422 (764)
..... ...........++...|+.+.|..+++.+.... .+...-....++...|++++|.+++.+..
T Consensus 255 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 255 AWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 10000 011111245556666777777777777665421 11111122234567888888888887765
Q ss_pred h
Q 004273 423 Q 423 (764)
Q Consensus 423 ~ 423 (764)
.
T Consensus 335 ~ 335 (355)
T cd05804 335 D 335 (355)
T ss_pred H
Confidence 4
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.8e-05 Score=73.87 Aligned_cols=268 Identities=10% Similarity=0.011 Sum_probs=188.2
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChh-hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhH
Q 004273 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILP-VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 118 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
++-|+.....+...+...|+.++|+..|+...- +.|+.. ....-.-.+.+.|+.+....+...+.... .-+...|
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 455777788888888888888888888887642 233322 11112222456777777777766665431 1122233
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccc
Q 004273 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
-.-.+..-..++++.|..+-++.+...+.+...|-.=..++...++++.|.-.|..... +.|..
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~r-------------- 367 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYR-------------- 367 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhh--------------
Confidence 33334445677888888888888887888888888878888899999999999988876 55554
Q ss_pred cCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHH-HHHH-hcCChhHHHHHHHHH
Q 004273 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI-RAIV-SDRGLRNGMEVLKIM 354 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~~-~~~~~~~a~~~~~~m 354 (764)
..+|.-|+.+|...|++.+|.-+-+..... ..-+..+.+.+- ..|. ....-++|..+++.-
T Consensus 368 ----------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 368 ----------------LEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred ----------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 159999999999999999988776664432 122444544442 2222 233447788888877
Q ss_pred HHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004273 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 355 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
....+. -....+.+...+...|..+++..+++...... |....+.|...+...+.+.+|++.|.....
T Consensus 431 L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 431 LKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred hccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 665432 23446677888999999999999999876554 888899999999999999999999988776
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00069 Score=73.51 Aligned_cols=380 Identities=9% Similarity=0.009 Sum_probs=200.8
Q ss_pred hhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccC-CCC
Q 004273 8 TRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHH-SLG 86 (764)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 86 (764)
+.+..+...|+..-....|. +-|.....++|.. ...+-.....|++..+|+.|..+.-..-+... ..-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~----------kCf~KAFeLDatd-aeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~ 561 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAK----------KCFDKAFELDATD-AEAAAASADTYAEESTWEEAFEICLRAAQKAPAFAC 561 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHhcCCchh-hhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHH
Confidence 34444555555544555555 4444556666653 44455567778888999998887333222210 011
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
..-+....-.+...++...++.-|+...+.+ +.|...|..+..+|..+|++..|.++|++... +.|+. +|.....
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~s-~y~~fk~ 636 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPLS-KYGRFKE 636 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcHh-HHHHHHH
Confidence 1223334456667788888888888887765 45777899999999999999999999987753 34442 3333322
Q ss_pred --HHhccCCHHHHHHHHHHHHhc------CCCCChhhHHHHHHHHHhccChhHHHHHHHHH-------HccC-CCCHHhH
Q 004273 167 --ACAKLHSMVHANLCLDLMDSR------MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-------IKHY-SLSIFSL 230 (764)
Q Consensus 167 --~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~ 230 (764)
..+..|.+.+|+..++..... +..--..++..+...+...|-..++..+++.- ..+. ..+...|
T Consensus 637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~W 716 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQW 716 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 235568899998888876543 11111223333333333333333333333332 2222 3333444
Q ss_pred HHHHHHhhccCCHH--H----HHHHH-HHHHHhhhcccch---hcccccccccccccCCCccCCcccchhhhHhhHHHHH
Q 004273 231 RKFVWSFTRLRDLK--S----AYETL-QHMVALAMMGKLY---INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 231 ~~li~~~~~~g~~~--~----A~~~~-~~m~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
-.+.++|.-.-..+ . -..+| .+....+.-++.. ++.. ++...-..... ..+|..+.
T Consensus 717 i~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~-c~~~hlsl~~~-------------~~~WyNLG 782 (1238)
T KOG1127|consen 717 IVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYE-CGIAHLSLAIH-------------MYPWYNLG 782 (1238)
T ss_pred HHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHH-HhhHHHHHhhc-------------cchHHHHh
Confidence 44333322111110 0 01111 1122212221110 0000 11000000000 14566665
Q ss_pred HHHHc----c---C-CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHH
Q 004273 301 HACGR----T---Q-NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 301 ~~~~~----~---g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 372 (764)
..|.+ . + +...|...+..-++. ..+...+...+......|++.-+...|-.-...... ...+|..+...
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL 859 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVL 859 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcccc-chhheecccee
Confidence 55544 1 1 223566666666553 234443444444446667777777766665555443 45566667777
Q ss_pred HHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHH
Q 004273 373 CSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAK 420 (764)
Q Consensus 373 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~ 420 (764)
+.+..+++.|...|....... +...|--....--..|+.-++..+|..
T Consensus 860 ~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred EEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 788888888888888877653 555565544445556777777777766
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-05 Score=80.75 Aligned_cols=310 Identities=9% Similarity=-0.029 Sum_probs=175.7
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhh-h-HHHHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 004273 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEES-I-SKATQMQIVDALCRGERSRASHLLLNLGHA 81 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~-~-~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~ 81 (764)
|+....+..++..+...|+.+++. ..+.+ .....|.. + ..........+...|++++|...+++..+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAA-AKAAA---------AAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHH-HHHHH---------HHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455556666777777778888875 22221 12111211 1 111222234466789999999999998876
Q ss_pred cCCCCcchHHH---HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh
Q 004273 82 HHSLGADDFFH---ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL 158 (764)
Q Consensus 82 ~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 158 (764)
. |.+...+.. ........+....+.+.++. .....+........+...+...|++++|...+++..+.. +.+.
T Consensus 73 ~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~ 148 (355)
T cd05804 73 Y-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDA 148 (355)
T ss_pred C-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCc
Confidence 4 333333331 11111223445555555544 111122233445566678889999999999999987643 3445
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CCh--hhHHHHHHHHHhccChhHHHHHHHHHHccCC--CCHHhH-H-
Q 004273 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KNE--VTYTELLKLAVWQKNLSAVHEIWEDYIKHYS--LSIFSL-R- 231 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~-~- 231 (764)
..+..+...+...|++++|...++........ |+. ..|..+...+...|++++|..+++......+ +..... +
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 228 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDA 228 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhH
Confidence 67788888999999999999999988765322 232 2344677778899999999999999864322 222211 1
Q ss_pred -HHHHHhhccCCHHHHHHHHHHHHHhhhc--ccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCC
Q 004273 232 -KFVWSFTRLRDLKSAYETLQHMVALAMM--GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308 (764)
Q Consensus 232 -~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 308 (764)
.++.-+...|..+.+.++ +.+...... +... . .........++...|+
T Consensus 229 ~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~-~---------------------------~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 229 ASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHG-L---------------------------AFNDLHAALALAGAGD 279 (355)
T ss_pred HHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCccc-c---------------------------hHHHHHHHHHHhcCCC
Confidence 233334444443333333 222211100 1000 0 0122356777888999
Q ss_pred HHHHHHHHHHHHHCCCCC--C----cccHHHHHHH--HHhcCChhHHHHHHHHHHH
Q 004273 309 SGLAEQLMLQMQSLGLQP--S----SHTYDGFIRA--IVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 309 ~~~a~~~~~~m~~~g~~p--~----~~t~~~li~~--~~~~~~~~~a~~~~~~m~~ 356 (764)
.+.|..+++.+......+ . ..+-..++.+ +...|+.+.|.+.+.....
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999887633221 0 0111222222 3366777777777766654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-06 Score=85.10 Aligned_cols=252 Identities=14% Similarity=0.068 Sum_probs=166.1
Q ss_pred HHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHH
Q 004273 14 ADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHI 93 (764)
Q Consensus 14 ~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 93 (764)
++-+.=.|.+..++ ..+. +.+..|+........+.+++...|+.+.++ .++.... +|.......+
T Consensus 8 vrn~fy~G~Y~~~i----------~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~l 72 (290)
T PF04733_consen 8 VRNQFYLGNYQQCI----------NEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLL 72 (290)
T ss_dssp HHHHHCTT-HHHHC----------HHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHH
T ss_pred HHHHHHhhhHHHHH----------HHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHH
Confidence 34455567777777 2222 123345545555556788899999877554 4443333 4666556555
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCcc-ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC
Q 004273 94 LNYCARSPDPLFVMETWRMMEEKEIG-LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 172 (764)
...+....+-+.++.-++........ .+..........+...|++++|+++++.. .+.......+..|.+.+
T Consensus 73 a~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~ 145 (290)
T PF04733_consen 73 AEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMN 145 (290)
T ss_dssp HHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT
T ss_pred HHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcC
Confidence 55555445555566555554444333 34444444456677899999999988643 24556777889999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH----hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHH
Q 004273 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAV----WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
+++.|.+.++.|.+. ..| .+...+..++. ....+.+|.-+|+++...+++++.+.+.+..++...|++++|.+
T Consensus 146 R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~ 222 (290)
T PF04733_consen 146 RPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEE 222 (290)
T ss_dssp -HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHH
T ss_pred CHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999975 334 44444544443 23468999999999998889999999999999999999999999
Q ss_pred HHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCH-HHHHHHHHHHHHC
Q 004273 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNS-GLAEQLMLQMQSL 322 (764)
Q Consensus 249 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 322 (764)
++.+..+ ..|..+ .+...++-+....|+. +.+.+.+.++...
T Consensus 223 ~L~~al~--~~~~~~------------------------------d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 223 LLEEALE--KDPNDP------------------------------DTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHCC--C-CCHH------------------------------HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHH--hccCCH------------------------------HHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999765 333331 3666677777777777 6777888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00067 Score=66.23 Aligned_cols=290 Identities=14% Similarity=0.058 Sum_probs=161.8
Q ss_pred HccCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHH
Q 004273 304 GRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382 (764)
Q Consensus 304 ~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 382 (764)
+..++...+..++-.+.... ++-|++....+.+.+...|+..++...|+..+..++- +..........+.+.|+.+..
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhH
Confidence 33455555555554444333 3334556677777777788888888888777654321 111122233334566666666
Q ss_pred HHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHH
Q 004273 383 EALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460 (764)
Q Consensus 383 ~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 460 (764)
..+...+.... ....|-.-........+++.|+.+-++-.+ +.|+. .-.+|
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~-~~~r~--~~ali------------------------ 338 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID-SEPRN--HEALI------------------------ 338 (564)
T ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc-cCccc--chHHH------------------------
Confidence 66666554431 233344444444555666666666655543 11111 11110
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 004273 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538 (764)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~ 538 (764)
.--..+...++.++|.-.|+... .+-+..+|.-|+..|...|++.+|+-+-++..+.
T Consensus 339 ---------------------lKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 339 ---------------------LKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred ---------------------hccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 01122344566666666665531 2335667888888888888888777776654443
Q ss_pred CCCCCHHHHHHHH-HHHH-ccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004273 539 GIPPNAATYNIMI-DCCS-IIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615 (764)
Q Consensus 539 g~~p~~~t~~~ll-~~~~-~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 615 (764)
+..+..+.+.+- ..|. ....-++|..+++.-.+. .|+ ....+.+...+...|..++++.++++... ..||..
T Consensus 398 -~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~ 472 (564)
T KOG1174|consen 398 -FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVN 472 (564)
T ss_pred -hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccH
Confidence 223444443331 2222 222345677777666553 344 23445566667777777777777777663 367777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004273 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649 (764)
Q Consensus 616 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 649 (764)
..+.|.+.+...+.+++|.+.|...+. +.|+.
T Consensus 473 LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 473 LHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 777777777777777777777777764 44544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.1e-08 Score=60.06 Aligned_cols=32 Identities=38% Similarity=0.572 Sum_probs=14.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004273 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605 (764)
Q Consensus 574 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 605 (764)
|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00031 Score=65.33 Aligned_cols=348 Identities=11% Similarity=0.058 Sum_probs=181.9
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccc
Q 004273 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
++++..+.+..+++.|.+++....+..+.+....+.|..+|....++..|-..++++.. ..|..
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~-------------- 77 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPEL-------------- 77 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHH--------------
Confidence 33444444444455555554444444444445555555556666666666666666554 22221
Q ss_pred cCCCccCCcccchhhhHhhHH-HHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH--HhcCChhHHHHHHHH
Q 004273 277 LDIPIPLNALPVMKVLRWSFS-DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI--VSDRGLRNGMEVLKI 353 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~--~~~~~~~~a~~~~~~ 353 (764)
.-|. --...+.+.+.+..|+.+...|... |+...-..-+.+. ...+++..+..+.++
T Consensus 78 -----------------~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ 137 (459)
T KOG4340|consen 78 -----------------EQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQ 137 (459)
T ss_pred -----------------HHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHh
Confidence 0111 0123445566677777777776542 2222222222222 246677777777766
Q ss_pred HHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCH
Q 004273 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDI 429 (764)
Q Consensus 354 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~ 429 (764)
....| +..+.+...-...+.|+.+.|.+-|+...+-+ ....||..+ +..+.+++..|++...++.+ |++-.+
T Consensus 138 lp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 138 LPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred ccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence 65332 33334444444567788888888888776654 455566544 44456888888888888887 654322
Q ss_pred HhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCC---
Q 004273 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP--- 506 (764)
Q Consensus 430 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 506 (764)
..- .|...+... .+.++....+ ..+++ ...+|.-...+.+.++++.|.+.+-+|.++
T Consensus 214 Elg---------IGm~tegiD-vrsvgNt~~l-------h~Sal---~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~ 273 (459)
T KOG4340|consen 214 ELG---------IGMTTEGID-VRSVGNTLVL-------HQSAL---VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEE 273 (459)
T ss_pred ccC---------ccceeccCc-hhcccchHHH-------HHHHH---HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccc
Confidence 110 000000000 0000000000 00000 122333344567889999999999888543
Q ss_pred -CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC-CCCHHHHHH
Q 004273 507 -LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-YPQTMTYTA 584 (764)
Q Consensus 507 -~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~p~~~~~~~ 584 (764)
.|.+|...+.-. -..+++.+..+-+.-+.+.+. -...||..++-.||+..-++.|-.++.+-...-+ -.+...|+.
T Consensus 274 elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L 351 (459)
T KOG4340|consen 274 ELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL 351 (459)
T ss_pred cCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH
Confidence 355555443221 123556566655565665543 3457888888899999888888888765332211 134445553
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004273 585 LIKILLDYGDFDEALNLLDLVS 606 (764)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~ 606 (764)
|=......-..++|.+-++.+.
T Consensus 352 LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 352 LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHhCCCCHHHHHHHHHHHH
Confidence 3222233446677776665543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.9e-08 Score=58.97 Aligned_cols=32 Identities=34% Similarity=0.654 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004273 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640 (764)
Q Consensus 609 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 640 (764)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777766
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.9e-05 Score=70.97 Aligned_cols=305 Identities=11% Similarity=0.009 Sum_probs=201.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHH---HHHhhCCCChhHHHHHHHHHHHcCccccHH-HHHHHHHHH
Q 004273 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHI---LNYCARSPDPLFVMETWRMMEEKEIGLNNK-CYLLMMQAL 132 (764)
Q Consensus 57 ~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~ 132 (764)
-+...+...|++..|+..|....+.+ +..|.++ ...|...|....|+.=+...++. .||-. ....-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~d----p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGD----PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCC----chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 44677888899999999998887643 4444444 45777788888888888888876 56644 334456678
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHH
Q 004273 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
.++|.++.|..-|+...+.+ |+. +....++.+.--.++-.. ....+..+...||...|
T Consensus 117 lK~Gele~A~~DF~~vl~~~---~s~---~~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE---PSN---GLVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNA 174 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC---CCc---chhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhH
Confidence 89999999999999887542 321 122222222211122111 12233445567888888
Q ss_pred HHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhh
Q 004273 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
+++...+.+-.+.|...|..-..+|...|++..|+.=+....+ +..|.
T Consensus 175 i~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask--Ls~Dn------------------------------ 222 (504)
T KOG0624|consen 175 IEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASK--LSQDN------------------------------ 222 (504)
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh--ccccc------------------------------
Confidence 8888888888888888888888888888888888777666665 33322
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHH----HH---------HHHHHhcCChhHHHHHHHHHHHCCC
Q 004273 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD----GF---------IRAIVSDRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~----~l---------i~~~~~~~~~~~a~~~~~~m~~~~~ 359 (764)
+.++--+-..+...|+.+.++...++-.+. .||...+- .| +......++|.++.+-.+...+...
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 124444555566677777777777776654 45543221 11 2223456777888888888777665
Q ss_pred CCchhHHH---HHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004273 360 KPQDSTIA---TLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 360 ~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
......++ .+-.++...+++.+|++.-.++.+.. |+.++---..+|.-...++.|+.-|+...+
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 53344444 45566777788999998888877653 455555556778888888999888888776
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00019 Score=84.94 Aligned_cols=338 Identities=10% Similarity=-0.067 Sum_probs=212.2
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcC--c----ccc--HHHHHHHHH
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE--I----GLN--NKCYLLMMQ 130 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~--~~~~~~li~ 130 (764)
.......|+++.+...++.+.......++.........+...|+++++...++.....- . .+. ......+..
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 34455678888877777776432212233333344445556789999999888775431 0 111 112223334
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCC---ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC---C--ChhhHHHHHHH
Q 004273 131 ALCKGGYLEEASNLIYFLGERYGIYP---ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG---K--NEVTYTELLKL 202 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p--~~~t~~~ll~~ 202 (764)
.+...|++++|...+++..+...... .....+.+...+...|++++|...+++.....-. + ...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 56688999999999998754221111 1124456666778899999999999887643111 1 12344455566
Q ss_pred HHhccChhHHHHHHHHHHcc----CCC----CHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccc
Q 004273 203 AVWQKNLSAVHEIWEDYIKH----YSL----SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~----~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 274 (764)
+...|+++.|...++..... ..+ ....+..+...+...|+++.|...+.+...........
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~----------- 609 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ----------- 609 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch-----------
Confidence 78899999999998887652 111 23345556667778899999999998876532111000
Q ss_pred cccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CcccH-----HHHHHHHHhcCChhHHH
Q 004273 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP-SSHTY-----DGFIRAIVSDRGLRNGM 348 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~-----~~li~~~~~~~~~~~a~ 348 (764)
.....+..+...+...|+++.|...+.+........ ....+ ...+..+...|+.+.|.
T Consensus 610 ----------------~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 673 (903)
T PRK04841 610 ----------------QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAA 673 (903)
T ss_pred ----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHH
Confidence 001356667778889999999999998875421111 11111 11223445678899999
Q ss_pred HHHHHHHHCCCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------CCcchHHHHHHHhcCCCHHHHHHH
Q 004273 349 EVLKIMQQNNLKPQD---STIATLSVECSKALELDLAEALLDQISRCT--------NPKPFSAFLAACDTMDKPERAIKI 417 (764)
Q Consensus 349 ~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~l 417 (764)
.++............ .....+...+...|+.++|...+.+..... ...+...+..++.+.|+.++|...
T Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~ 753 (903)
T PRK04841 674 NWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRV 753 (903)
T ss_pred HHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 887775542221111 113456777889999999999998876531 123455566778899999999999
Q ss_pred HHHHhh
Q 004273 418 FAKMRQ 423 (764)
Q Consensus 418 ~~~m~~ 423 (764)
+.+..+
T Consensus 754 L~~Al~ 759 (903)
T PRK04841 754 LLEALK 759 (903)
T ss_pred HHHHHH
Confidence 999877
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-05 Score=80.43 Aligned_cols=222 Identities=9% Similarity=0.007 Sum_probs=173.3
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
...+.++|+..+|.-.|+...+.+ |-+...|-.|...-+.+++-..|+..+++-.+.+ +-|....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 556788999999999999988876 4566778888888888888888999999998885 55777888899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHH-----------HHHhccCCHHHHHHHHHHHHh-cCCCCChhhHHHHHHHHHhc
Q 004273 139 EEASNLIYFLGERYGIYPILPVYNSFL-----------GACAKLHSMVHANLCLDLMDS-RMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~ 206 (764)
.+|.+.|+...... | .|..+. +.+.....+....++|-++.. .+..+|......|--.|--.
T Consensus 370 ~~Al~~L~~Wi~~~---p---~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 370 NQALKMLDKWIRNK---P---KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHHHhC---c---cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 99999998775421 0 111111 122223344556666666544 45446777777777778889
Q ss_pred cChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcc
Q 004273 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
|++++|...|+.+....|.|...||.|...++...+.++|+..|.+.++ ++|.-
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~y------------------------ 497 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGY------------------------ 497 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCe------------------------
Confidence 9999999999999999999999999999999999999999999999998 66654
Q ss_pred cchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004273 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 320 (764)
..++..|.-+|...|.+++|.+.|-..+
T Consensus 498 ------VR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 498 ------VRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred ------eeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 1356677778899999999998887654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.8e-06 Score=79.82 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCH-HHHHHH
Q 004273 307 QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL-DLAEAL 385 (764)
Q Consensus 307 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~ 385 (764)
.++..|..+|+++.+. ..++..+.+.+..+....|++++|.+++.+....+.. +..+...++.+....|+. +.+.+.
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3455666666665433 2344455555555555556666666655555544333 334444444444444444 444444
Q ss_pred HHHHh
Q 004273 386 LDQIS 390 (764)
Q Consensus 386 ~~~~~ 390 (764)
+.++.
T Consensus 259 l~qL~ 263 (290)
T PF04733_consen 259 LSQLK 263 (290)
T ss_dssp HHHCH
T ss_pred HHHHH
Confidence 44444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.3e-05 Score=86.09 Aligned_cols=234 Identities=11% Similarity=0.031 Sum_probs=176.5
Q ss_pred cchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhc-cCCC---CcchHHHHHHHh
Q 004273 22 FHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA-HHSL---GADDFFHILNYC 97 (764)
Q Consensus 22 ~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~ll~~~ 97 (764)
+.+++.+..-++-+....|...+-..|. .+-.|...|......++.+.|.+++++.... +++- -.+.|.++++.-
T Consensus 1429 ~~~~e~~dl~~~pesaeDferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlE 1507 (1710)
T KOG1070|consen 1429 RSDEEERDLSRAPESAEDFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLE 1507 (1710)
T ss_pred ccchhhcccccCCcCHHHHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHH
Confidence 3344443333233344555555555565 3566777788888999999999999987643 2111 123466666666
Q ss_pred hCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHH
Q 004273 98 ARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177 (764)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 177 (764)
..-|.-+...++|+++.+.- ..-..|..|...|.+.+++++|.++|+.|.++.+. ...+|...+..+.++.+-+.|
T Consensus 1508 n~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1508 NAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--TRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred HhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--hhhHHHHHHHHHhcccHHHHH
Confidence 66677788999999998863 22346889999999999999999999999988873 455899999999999999999
Q ss_pred HHHHHHHHhcCCCCCh---hhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004273 178 NLCLDLMDSRMVGKNE---VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 178 ~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
..++.+..+. -|.. ....-....-.+.||.+.+..+|+......|--...|+..++.-.+.|+.+.+..+|+++.
T Consensus 1584 ~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1584 RELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred HHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999998875 3331 1222233334578999999999999999888889999999999999999999999999999
Q ss_pred Hhhhcccc
Q 004273 255 ALAMMGKL 262 (764)
Q Consensus 255 ~~~~~~~~ 262 (764)
..++.+..
T Consensus 1662 ~l~l~~kk 1669 (1710)
T KOG1070|consen 1662 ELKLSIKK 1669 (1710)
T ss_pred hcCCChhH
Confidence 87777654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0015 Score=66.38 Aligned_cols=235 Identities=12% Similarity=0.051 Sum_probs=126.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCC
Q 004273 367 ATLSVECSKALELDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNA 444 (764)
Q Consensus 367 ~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~ 444 (764)
..+.++.-+..+++.|.+-++...... +..-++..-.+|...|.+.+.......-.+ |.. ...-|+.+-.++
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~----- 301 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKAL----- 301 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHH-----
Confidence 345555556666777766666655442 333345555667777776666655555433 210 001111111111
Q ss_pred chhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCC-CCChhhHHHHHHHHHHcC
Q 004273 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT-PLGTPTYNTVLHSLVEAQ 523 (764)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~ 523 (764)
..+..+|.+.++++.+...|.+... ..+. ....+..
T Consensus 302 ------------------------------------~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~-------~~ls~lk 338 (539)
T KOG0548|consen 302 ------------------------------------ARLGNAYTKREDYEGAIKYYQKALTEHRTP-------DLLSKLK 338 (539)
T ss_pred ------------------------------------HHhhhhhhhHHhHHHHHHHHHHHhhhhcCH-------HHHHHHH
Confidence 1133456666777777777765311 1111 1122333
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004273 524 ESHRAMEIFKQMKTCGIPPNAAT-YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602 (764)
Q Consensus 524 ~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 602 (764)
..++++.......-. .|.... ...--+.+.+.|++..|...|.++++.. +-|...|..-.-+|.+.|.+..|++=.
T Consensus 339 ~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da 415 (539)
T KOG0548|consen 339 EAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDA 415 (539)
T ss_pred HHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 445555544444332 233211 1112445667788888888888888775 446777888888888888888888776
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 004273 603 DLVSLEGIPHD-VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657 (764)
Q Consensus 603 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 657 (764)
+...+. .|+ ...|.-=..++....+++.|.+.|.+.++ ..|+..-+..-+.
T Consensus 416 ~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 416 KKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYR 467 (539)
T ss_pred HHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 666543 333 22333333334444567777777777765 3455544433333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.001 Score=78.70 Aligned_cols=345 Identities=13% Similarity=-0.003 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 132 (764)
.........+...|++.+|...+....... .-..............|++..+.+.++.+.......++.........+
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 333444555667777777776555442211 001112222233344577776666666553221112232333445556
Q ss_pred HccCCHHHHHHHHHHHhhhcCC-----CCCh--hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHH
Q 004273 133 CKGGYLEEASNLIYFLGERYGI-----YPIL--PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE----VTYTELLK 201 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~-----~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~ 201 (764)
...|++++|..+++...+...- .+.. .....+...+...|++++|...++.....-...+. .+.+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 6789999999998876432111 1111 12222334456789999999999987763212222 23344555
Q ss_pred HHHhccChhHHHHHHHHHHcc----CCC--CHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccccccccc
Q 004273 202 LAVWQKNLSAVHEIWEDYIKH----YSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSS 275 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 275 (764)
.+...|+++.|...+...... ..+ ...++..+..++...|+++.|...+++.....-.....
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~------------ 567 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE------------ 567 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc------------
Confidence 667899999999999888752 111 23455667778889999999999999877531111000
Q ss_pred ccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCC--cccHHHHHHHHHhcCChhHHHHHH
Q 004273 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG--LQPS--SHTYDGFIRAIVSDRGLRNGMEVL 351 (764)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~--~~t~~~li~~~~~~~~~~~a~~~~ 351 (764)
........+..+...+...|++++|...+.+..... ..+. ..++..+.......|+++.|...+
T Consensus 568 ------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l 635 (903)
T PRK04841 568 ------------QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYL 635 (903)
T ss_pred ------------cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 000001244556667777899999999998875531 1122 223444555677899999999998
Q ss_pred HHHHHCCCCC-chhHH-----HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc------hHHHHHHHhcCCCHHHHHHHHH
Q 004273 352 KIMQQNNLKP-QDSTI-----ATLSVECSKALELDLAEALLDQISRCTNPKP------FSAFLAACDTMDKPERAIKIFA 419 (764)
Q Consensus 352 ~~m~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~a~~l~~ 419 (764)
.......... ....+ ...+..+...|+.+.|...+........... +..+..++...|++++|...++
T Consensus 636 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ 715 (903)
T PRK04841 636 NRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILE 715 (903)
T ss_pred HHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8875421110 11101 1123445668899999999877654321111 3456667888899999999888
Q ss_pred HHhh
Q 004273 420 KMRQ 423 (764)
Q Consensus 420 ~m~~ 423 (764)
+...
T Consensus 716 ~al~ 719 (903)
T PRK04841 716 ELNE 719 (903)
T ss_pred HHHH
Confidence 7764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.9e-05 Score=76.83 Aligned_cols=222 Identities=9% Similarity=-0.043 Sum_probs=164.6
Q ss_pred HhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004273 96 YCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
-+.+.|+...|.=+|+..++.+ +-+...|..|..+.+..++-..|+..+.+..+-+ +-|....-.|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHH
Confidence 3457788889999999888885 5577899999999999999999999998886543 234556777777888889999
Q ss_pred HHHHHHHHHHhcCCC--------CChhhHHHHHHHHHhccChhHHHHHHHHHHccC--CCCHHhHHHHHHHhhccCCHHH
Q 004273 176 HANLCLDLMDSRMVG--------KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY--SLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 245 (764)
.|+..|+......++ ++..+-.. +.+.....+....++|-.+.... .+|+.+...|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999887654211 01000000 12223333455666666666543 4888899999999999999999
Q ss_pred HHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004273 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 246 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 325 (764)
|+..|+.+.. ++|++ ...||-|-..++...+.++|+..|.+.++. +
T Consensus 449 aiDcf~~AL~--v~Pnd------------------------------~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--q 494 (579)
T KOG1125|consen 449 AVDCFEAALQ--VKPND------------------------------YLLWNRLGATLANGNRSEEAISAYNRALQL--Q 494 (579)
T ss_pred HHHHHHHHHh--cCCch------------------------------HHHHHHhhHHhcCCcccHHHHHHHHHHHhc--C
Confidence 9999999988 77776 268999999999999999999999999875 6
Q ss_pred CCcc-cHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004273 326 PSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 326 p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~ 356 (764)
|+-+ ....|--.|...|.+++|...|-..+.
T Consensus 495 P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 495 PGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 6643 444455568899999998888766543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0044 Score=63.07 Aligned_cols=106 Identities=12% Similarity=0.073 Sum_probs=72.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 004273 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGD 594 (764)
Q Consensus 516 i~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~ 594 (764)
.+.+.+.|++..|+..|.+++... +-|...|..-.-+|.+.|.+..|+.=.+..++. .|+ ...|..=..++.-..+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHH
Confidence 456678899999999999998886 446778888888999999999988887777775 233 2333333334444557
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004273 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626 (764)
Q Consensus 595 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 626 (764)
++.|++.|++..+. .|+..-+..-+.-|..
T Consensus 442 ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 442 YDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 88888888887643 3554444444444444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0047 Score=62.83 Aligned_cols=157 Identities=11% Similarity=0.129 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004273 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP-NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
.+|...|+.-.+..-++.|..+|.+..+.+..+ +...+++++..+|. ++.+-|.++|+.=.+. +.-++.--...++-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 467777777777778888888888888887777 66677777776664 6777888888654433 22333444667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHhcC
Q 004273 589 LLDYGDFDEALNLLDLVSLEGIPHDV--LLYNTILKKACEKGRIDVIEFIIEQMHQN---KVQPDPSTCHFVFSGYVNCG 663 (764)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g 663 (764)
+...++-..|..+|++....++.||. .+|..+|.-=..-|++..+.++-+++... ...+....-..+++-|.-.+
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 77888888888888888877666553 57888888777888888888887777642 11222223334455555555
Q ss_pred ChHHH
Q 004273 664 FHNSA 668 (764)
Q Consensus 664 ~~~~a 668 (764)
++.--
T Consensus 525 ~~~c~ 529 (656)
T KOG1914|consen 525 LYPCS 529 (656)
T ss_pred ccccc
Confidence 54433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0047 Score=62.78 Aligned_cols=151 Identities=13% Similarity=0.085 Sum_probs=118.2
Q ss_pred hhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004273 525 SHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP-QTMTYTALIKILLDYGDFDEALNLL 602 (764)
Q Consensus 525 ~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 602 (764)
.+...+.+++....- +.| ..+|...++...+...++.|+.+|.++.+.+..+ ++..+++++.-||. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 455666676665542 334 3568888888888899999999999999988777 88899999998886 6789999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004273 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD--PSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 603 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
+.-... +.-++.--...++-+...++-..|..+|++.+..++.|| ...|..+|.-=+.-|+.+.+.++-+++...
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 975532 233444456677888888999999999999998866665 468999999889999999999888776543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00047 Score=68.73 Aligned_cols=167 Identities=7% Similarity=-0.040 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccC--hhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHH
Q 004273 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN--LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQ 251 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 251 (764)
+++++..++.+.+..++ +..+|+.--..+.+.++ .+.+..+++.+.+..+.+..+|+....++...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45555555555443322 22233322222223332 2455666666666667777777777777778888888888888
Q ss_pred HHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHcc---CC----HHHHHHHHHHHHHCCC
Q 004273 252 HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT---QN----SGLAEQLMLQMQSLGL 324 (764)
Q Consensus 252 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~a~~~~~~m~~~g~ 324 (764)
++.+.+.... .+|+.....+.+. |. .+..++...+++...
T Consensus 167 ~~I~~d~~N~--------------------------------sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~- 213 (320)
T PLN02789 167 QLLEEDVRNN--------------------------------SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN- 213 (320)
T ss_pred HHHHHCCCch--------------------------------hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-
Confidence 8887544433 2666555444433 22 245666666666653
Q ss_pred CCCcccHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHh
Q 004273 325 QPSSHTYDGFIRAIVSD----RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSK 375 (764)
Q Consensus 325 ~p~~~t~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 375 (764)
+-|...|+.+...+... +...+|.+.+.+..+.++. +...+..|++.|+.
T Consensus 214 P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 214 PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 23556677777777662 3345677777776665443 45566677777765
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.7e-05 Score=73.04 Aligned_cols=189 Identities=11% Similarity=-0.019 Sum_probs=125.9
Q ss_pred CCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH---HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hh
Q 004273 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN---KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL-PV 160 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~ 160 (764)
.....+..+...+...|+++.|...++++.... +.++ ..+..+..+|.+.|++++|...++.+.+..+-.|.. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 344557777778888899999999999888764 2222 466778888889999999999999887654322221 13
Q ss_pred hHHHHHHHhcc--------CCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHH
Q 004273 161 YNSFLGACAKL--------HSMVHANLCLDLMDSRMVGKNEV-TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231 (764)
Q Consensus 161 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (764)
+..+..++.+. |+.+.|.+.|+.+... .|+.. .+..+.......+.. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~-----------------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRL-----------------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHH-----------------HHHHH
Confidence 44455555544 6788888888888775 34432 222221111000000 00112
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHH
Q 004273 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL 311 (764)
Q Consensus 232 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 311 (764)
.+...|.+.|+++.|...++...+. .|+.+.. ...+..+..++.+.|++++
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~---------------------------~~a~~~l~~~~~~lg~~~~ 221 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVEN--YPDTPAT---------------------------EEALARLVEAYLKLGLKDL 221 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH--CCCCcch---------------------------HHHHHHHHHHHHHcCCHHH
Confidence 4556788999999999999999873 2322100 1488899999999999999
Q ss_pred HHHHHHHHHHC
Q 004273 312 AEQLMLQMQSL 322 (764)
Q Consensus 312 a~~~~~~m~~~ 322 (764)
|...++.+...
T Consensus 222 A~~~~~~l~~~ 232 (235)
T TIGR03302 222 AQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHhh
Confidence 99999998765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00041 Score=69.15 Aligned_cols=205 Identities=8% Similarity=-0.079 Sum_probs=121.5
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCH--H
Q 004273 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG-YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM--V 175 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~ 175 (764)
..+..++|+.+.+++++.+ +-+..+|+..-.++...| ++++++..++++.+.+ +.+..+|+..-..+.+.|+. +
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCchhhH
Confidence 3455566666666666553 223345555444555555 4567777766665443 22333455444334444442 5
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc---CC----HHHHHH
Q 004273 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL---RD----LKSAYE 248 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~ 248 (764)
+++.+++.+.+...+ +..+|+...-++...|+++++.+.++.+++..+.+..+|+....++.+. |. .+.++.
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 566666666665433 5566666666666667777777777777776666666776666655444 22 245666
Q ss_pred HHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHcc----CCHHHHHHHHHHHHHCCC
Q 004273 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT----QNSGLAEQLMLQMQSLGL 324 (764)
Q Consensus 249 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~ 324 (764)
...++.+ ..|+. ..+|+-+...+... ++..+|.+.+.+....+
T Consensus 205 y~~~aI~--~~P~N------------------------------~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~- 251 (320)
T PLN02789 205 YTIDAIL--ANPRN------------------------------ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD- 251 (320)
T ss_pred HHHHHHH--hCCCC------------------------------cCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-
Confidence 6666666 45544 15888888887773 34466888888876643
Q ss_pred CCCcccHHHHHHHHHh
Q 004273 325 QPSSHTYDGFIRAIVS 340 (764)
Q Consensus 325 ~p~~~t~~~li~~~~~ 340 (764)
..+......|+..++.
T Consensus 252 ~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 252 SNHVFALSDLLDLLCE 267 (320)
T ss_pred CCcHHHHHHHHHHHHh
Confidence 2355667777777764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00025 Score=79.48 Aligned_cols=202 Identities=11% Similarity=0.046 Sum_probs=127.5
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHc-Cccc---cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004273 89 DFFHILNYCARSPDPLFVMETWRMMEEK-EIGL---NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 164 (764)
.|...+....+.++.+.|+++.++++.. ++.- -...|.++++.--..|.-+...++|++..+-- ..-..|..|
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~~~V~~~L 1536 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---DAYTVHLKL 1536 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---chHHHHHHH
Confidence 3555566666667777777777776653 1111 12355555555555566677777777775421 112356677
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCC--CHHhHHHHHHHhhccCC
Q 004273 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~ 242 (764)
...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.+..+..|- ........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 77777777777777777777765 2235566667777777777777777777777765443 45556666666667777
Q ss_pred HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 243 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
.+.+..+|+.......+-. ..|+..|+.=.++|+.+.+..+|++....
T Consensus 1616 aeRGRtlfEgll~ayPKRt--------------------------------DlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRT--------------------------------DLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred chhhHHHHHHHHhhCccch--------------------------------hHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 7777777777665222222 27777777777777777777777777766
Q ss_pred CCCC
Q 004273 323 GLQP 326 (764)
Q Consensus 323 g~~p 326 (764)
++.|
T Consensus 1664 ~l~~ 1667 (1710)
T KOG1070|consen 1664 KLSI 1667 (1710)
T ss_pred CCCh
Confidence 6543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0097 Score=64.43 Aligned_cols=528 Identities=12% Similarity=0.045 Sum_probs=271.9
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhh--CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 136 (764)
|-.....+++..|+....++.+.. |+. .|..++.++. +.|..++|..+++.....+.. |..+...+-..|...|
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHh
Confidence 445667889999999999988764 433 4556666554 789999999888887776544 8889999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccC--------
Q 004273 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN-------- 208 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-------- 208 (764)
+.++|..++++..++ .|+......+..+|+|.+++.+-.++--++-+. ++-+...|=++++.....-.
T Consensus 92 ~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 92 KLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred hhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccc
Confidence 999999999999765 467777888889999988886554444333332 22345555455554443211
Q ss_pred --hhHHHHHHHHHHccC-C-CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCC
Q 004273 209 --LSAVHEIWEDYIKHY-S-LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284 (764)
Q Consensus 209 --~~~a~~~~~~~~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (764)
+.-|.+.++.+.+.. + .+..-.-.-...+...|+.++|..++..=......+..
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~---------------------- 225 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSAN---------------------- 225 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccc----------------------
Confidence 124455555555421 1 11222222333455778899998888432221111111
Q ss_pred cccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH----HHh------------cCChhHHH
Q 004273 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA----IVS------------DRGLRNGM 348 (764)
Q Consensus 285 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~----~~~------------~~~~~~a~ 348 (764)
...-+--+..+...+++.+..++-.++...| +|. |...+.. +-. .+..+...
T Consensus 226 --------~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ 293 (932)
T KOG2053|consen 226 --------LYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECI 293 (932)
T ss_pred --------hHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHH
Confidence 0233445666777888888888888888775 333 3322221 111 11122222
Q ss_pred HHHHHHHHCCCCCchhHHHHHHHHH---HhcCCHHHHHHH-HHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhc
Q 004273 349 EVLKIMQQNNLKPQDSTIATLSVEC---SKALELDLAEAL-LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK 424 (764)
Q Consensus 349 ~~~~~m~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 424 (764)
+..++....... ++ |-+=+..+ -.-|+.+++... |+..-.. ..|..=+..|...=..+.-..+......
T Consensus 294 ek~~~~i~~~~R-gp--~LA~lel~kr~~~~gd~ee~~~~y~~kfg~k---pcc~~Dl~~yl~~l~~~q~~~l~~~l~~- 366 (932)
T KOG2053|consen 294 EKAQKNIGSKSR-GP--YLARLELDKRYKLIGDSEEMLSYYFKKFGDK---PCCAIDLNHYLGHLNIDQLKSLMSKLVL- 366 (932)
T ss_pred HHHHHhhccccc-Cc--HHHHHHHHHHhcccCChHHHHHHHHHHhCCC---cHhHhhHHHhhccCCHHHHHHHHHHhhc-
Confidence 222222222111 11 22222222 234666665433 3333322 2222222222222222222222222221
Q ss_pred cCCCHH---------hHHHHH-HHhcCCCCchhhchhhhhhhhHHHHHHHHH-H-HHHCCCCCcH---------HHHHHH
Q 004273 425 LRPDIR---------TYELLF-SLFGNVNAPYEEGNMFSQVDSAKRINAIEM-D-MARNNIQHSH---------ISMKNL 483 (764)
Q Consensus 425 ~~p~~~---------t~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~---------~~~~~l 483 (764)
..++.. +.+..+ ..++..-... +.. ......+....++ . -...++.|+. .+.+.|
T Consensus 367 ~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~-ad~---i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~L 442 (932)
T KOG2053|consen 367 ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLP-ADS---ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHL 442 (932)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHhhccccCC-hHH---HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHH
Confidence 111111 011111 1111110000 000 0000001000000 0 1112233332 233568
Q ss_pred HHHHhccCcHH---HHHHHHHhc--CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 004273 484 LKALGAEGMIR---ELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558 (764)
Q Consensus 484 ~~~~~~~g~~~---~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 558 (764)
++.+.+.++.. +|+-+++.. ..+.|..+--.+|..|+-.|-+..|.++|+.|--+.|.-|+.-|.. ..-+...|
T Consensus 443 id~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g 521 (932)
T KOG2053|consen 443 IDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSG 521 (932)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcc
Confidence 88898888866 444444442 2223344455678889889999999999999877777777666543 33455567
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004273 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL---DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635 (764)
Q Consensus 559 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~---~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 635 (764)
++..+...++...+.--..-..+-..+..+| +.|.+.+..++. +++..+--..-..+-+..++..+..++.+.-..
T Consensus 522 ~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~ 600 (932)
T KOG2053|consen 522 RSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLK 600 (932)
T ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 7777666665554420000011122233333 345554444432 333221111122344556666677777777777
Q ss_pred HHHHHH
Q 004273 636 IIEQMH 641 (764)
Q Consensus 636 ~~~~m~ 641 (764)
.++.|.
T Consensus 601 ~~~~~~ 606 (932)
T KOG2053|consen 601 LLESMK 606 (932)
T ss_pred HHhccc
Confidence 776665
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.5e-05 Score=80.51 Aligned_cols=212 Identities=14% Similarity=0.021 Sum_probs=170.7
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
...+.+.|-..+|+.+|+++. .+--++.+|...|+...|..+..+-.++ +|++..|..+.+.....--+
T Consensus 405 aell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHH
Confidence 455777888999999998864 3555777788888888898888888874 78999999999999888889
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHH
Q 004273 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
++|.++++....+ .-..+.....+.++++++.+.|+.-.+.. ..-..+|-..-.+..+.+++..+.+.|..
T Consensus 474 EkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 474 EKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 9999998866432 11222222334789999999998876643 22455777777788899999999999999
Q ss_pred HHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHH
Q 004273 219 YIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298 (764)
Q Consensus 219 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (764)
.+...+.+...||++-.+|.+.++-.+|...+.+..+.+..+-. .|..
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~--------------------------------iWEN 592 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ--------------------------------IWEN 592 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe--------------------------------eeec
Confidence 99998999999999999999999999999999999987754433 7888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC
Q 004273 299 VIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 299 li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
.+....+.|.+++|++.+.+|...
T Consensus 593 ymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 593 YMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHh
Confidence 888899999999999999998753
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0003 Score=78.18 Aligned_cols=145 Identities=10% Similarity=0.046 Sum_probs=91.9
Q ss_pred chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN-KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
..+..|+..+...++++.|.++.+...+. .|+. ..|-.+...+...++.+++..+ . ++.
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~----------------~l~ 91 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N----------------LID 91 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h----------------hhh
Confidence 44666777776777777777777755554 2332 2233333345555554444333 2 222
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH
Q 004273 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
......++.....+...|... .-+...+..+..+|.+.|+.+++.++|+++.+..+.|+.+.|.+...|... ++++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 223333343333333444442 223446777778888889999999999999988888888999999888888 88888
Q ss_pred HHHHHHHHH
Q 004273 247 YETLQHMVA 255 (764)
Q Consensus 247 ~~~~~~m~~ 255 (764)
..++.+..+
T Consensus 169 ~~m~~KAV~ 177 (906)
T PRK14720 169 ITYLKKAIY 177 (906)
T ss_pred HHHHHHHHH
Confidence 888877765
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00015 Score=76.05 Aligned_cols=233 Identities=10% Similarity=0.034 Sum_probs=174.3
Q ss_pred CCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHH
Q 004273 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 155 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
+|-...-..+...+...|-..+|..+|++... |.-+|.+|...|+..+|..+..+-.+ .+||+..|-.++
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 33333445566777888999999999887654 56677888888999999998888877 788999999998
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHH
Q 004273 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 314 (764)
+.....--+++|.++++....+ +-..+......+++++++.+
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------------------------------------A~r~~~~~~~~~~~fs~~~~ 506 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------------------------------------AQRSLALLILSNKDFSEADK 506 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------------------------------------HHHhhccccccchhHHHHHH
Confidence 8888877888888888876542 11112222334788999999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-
Q 004273 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT- 393 (764)
Q Consensus 315 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 393 (764)
.|+.-.+.+ ..-..+|-.+--+..+.++++.+.+.|.......+. +...||.+-.+|.+.|+-.+|...+.+..+..
T Consensus 507 hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 507 HLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 888876643 224456766666777889999999999888775433 45568999999999999999999999988764
Q ss_pred -CCcchHHHHHHHhcCCCHHHHHHHHHHHhh--ccCCCHHhHHHHHH
Q 004273 394 -NPKPFSAFLAACDTMDKPERAIKIFAKMRQ--KLRPDIRTYELLFS 437 (764)
Q Consensus 394 -~~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~~p~~~t~~~ll~ 437 (764)
+...|...+....+.|.+++|++.+.++.. ....|......++.
T Consensus 585 ~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~ 631 (777)
T KOG1128|consen 585 QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVR 631 (777)
T ss_pred CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence 666788888888999999999999999877 22335555444443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0052 Score=58.72 Aligned_cols=198 Identities=14% Similarity=0.046 Sum_probs=126.2
Q ss_pred HHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccccccccccc
Q 004273 198 ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277 (764)
Q Consensus 198 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 277 (764)
.+-+.+...|.+..|+.-|...+++.+.+-.++-.-...|...|+...|+.=|.+..+ ++||-.-
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~------------- 107 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMA------------- 107 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHH-------------
Confidence 3445566677777777777777777777767776777778888888888877777777 5665310
Q ss_pred CCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc----------------HHHHHHHHHhc
Q 004273 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT----------------YDGFIRAIVSD 341 (764)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t----------------~~~li~~~~~~ 341 (764)
+----...+.+.|.++.|..=|+..++.. |+..+ ....+..+...
T Consensus 108 -----------------ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~ 168 (504)
T KOG0624|consen 108 -----------------ARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGS 168 (504)
T ss_pred -----------------HHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 11111234667888888888888887653 32211 11223344556
Q ss_pred CChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHH
Q 004273 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFA 419 (764)
Q Consensus 342 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~ 419 (764)
|+...|......+++..+ .|...+..-..+|...|++..|+.-++...+.. ++..+--+-..+-..|+.+.++...+
T Consensus 169 GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred CchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 777788888777777543 266666677777888888887777666665443 44555555556666777777766666
Q ss_pred HHhhccCCCHHh
Q 004273 420 KMRQKLRPDIRT 431 (764)
Q Consensus 420 ~m~~~~~p~~~t 431 (764)
+-.+ +.||...
T Consensus 248 ECLK-ldpdHK~ 258 (504)
T KOG0624|consen 248 ECLK-LDPDHKL 258 (504)
T ss_pred HHHc-cCcchhh
Confidence 5554 4455443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00013 Score=70.46 Aligned_cols=184 Identities=13% Similarity=0.033 Sum_probs=128.5
Q ss_pred hhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCc---chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH---
Q 004273 49 ESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGA---DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN--- 122 (764)
Q Consensus 49 ~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 122 (764)
+.....+......+...|++++|+..|+.+.... +.++ ..+..+..++.+.|+++.|...++.+.+.. +.+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchH
Confidence 3445566677888999999999999999998765 2222 356778888899999999999999999874 2122
Q ss_pred HHHHHHHHHHHcc--------CCHHHHHHHHHHHhhhcCCCCChh-hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh
Q 004273 123 KCYLLMMQALCKG--------GYLEEASNLIYFLGERYGIYPILP-VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE 193 (764)
Q Consensus 123 ~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 193 (764)
..+..+..++.+. |++++|.+.|+.+...+ |+.. .+..+..... .... ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~~----~~~~------~~-------- 166 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMDY----LRNR------LA-------- 166 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHHH----HHHH------HH--------
Confidence 2455556666654 78999999999997653 4432 2222211100 0000 00
Q ss_pred hhHHHHHHHHHhccChhHHHHHHHHHHccCC---CCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYS---LSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.....+...+...|++++|...++...+..+ .....+..+..++.+.|+.++|...++.+..
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0112344567888999999999999887543 3457888999999999999999999888875
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.8e-06 Score=51.98 Aligned_cols=33 Identities=42% Similarity=0.728 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 004273 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~ 543 (764)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00043 Score=64.07 Aligned_cols=157 Identities=10% Similarity=-0.024 Sum_probs=117.1
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
+..|...|+++.+..-.+.+.. +. . .+...++.+++...++...+.+ +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4567788998886444322211 11 1 1223567778888888888775 67888999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHH-hccCC--HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHH
Q 004273 139 EEASNLIYFLGERYGIYPILPVYNSFLGAC-AKLHS--MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
++|...|++..... +.+...+..+..++ .+.|+ .++|.+++++..+..+. +..++..+...+...|++++|...
T Consensus 90 ~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999887543 33556777777764 66677 59999999999987544 667778888888899999999999
Q ss_pred HHHHHccCCCCHHhHH
Q 004273 216 WEDYIKHYSLSIFSLR 231 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~ 231 (764)
|+.+.+..+|+..-+.
T Consensus 167 ~~~aL~l~~~~~~r~~ 182 (198)
T PRK10370 167 WQKVLDLNSPRVNRTQ 182 (198)
T ss_pred HHHHHhhCCCCccHHH
Confidence 9999988887776543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00025 Score=65.31 Aligned_cols=127 Identities=9% Similarity=-0.104 Sum_probs=71.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 004273 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW 205 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (764)
..+-..+--.|+-+....+...... ..+.|....+.++....+.|++..|+..|.+..... ++|..+|+.+--+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 3444455555655555555554422 222343444555666666666666666666655532 3355556655555666
Q ss_pred ccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.|+++.|..-|.+..+-.+.++..+|.+.-.|.-.|+.+.|..++.....
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666666666555555555666666666666666666666555554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0017 Score=72.53 Aligned_cols=240 Identities=8% Similarity=-0.070 Sum_probs=134.0
Q ss_pred CCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcch-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHH
Q 004273 45 GLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK 123 (764)
Q Consensus 45 ~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 123 (764)
.+.|. ....+..++..+...+++++|+++.+...+.. |+... |..+.-.+.+.++...+.-+
T Consensus 25 ~~~p~-n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------------- 87 (906)
T PRK14720 25 NYSLS-KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------------- 87 (906)
T ss_pred cCCcc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--------------
Confidence 34444 46778888998999999999999999777654 44433 33333355555554443322
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.++.......++.-+..+.+.|.+ . .-+...+-.|..+|-+.|+.++|..+++++.+..+. |..+.|.+-..+
T Consensus 88 ---~~l~~~~~~~~~~~ve~~~~~i~~-~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ 160 (906)
T PRK14720 88 ---NLIDSFSQNLKWAIVEHICDKILL-Y--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSY 160 (906)
T ss_pred ---hhhhhcccccchhHHHHHHHHHHh-h--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHH
Confidence 333333334444333333333322 1 123345566666666667777777777776665522 555666666666
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccc---ccccccccccCCC
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT---SEGRLRSSRLDIP 280 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 280 (764)
+.. ++++|.+++.+.++ .|....++..+.+++.++.+.....-++.... +.+.+...
T Consensus 161 ae~-dL~KA~~m~~KAV~--------------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~----- 220 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIY--------------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFT----- 220 (906)
T ss_pred HHh-hHHHHHHHHHHHHH--------------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccc-----
Confidence 666 66777666666543 34455566666666666655222111110000 00000000
Q ss_pred ccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 004273 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 339 (764)
+- ..++-.+-..|-...+++++..+|+...+... -|..+..-++.+|.
T Consensus 221 --------~~--~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 --------RL--VGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred --------hh--HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 00 14666677778888888888888888887642 24555666666665
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00047 Score=63.58 Aligned_cols=160 Identities=8% Similarity=-0.055 Sum_probs=125.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccC
Q 004273 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 241 (764)
..+-..+...|+-+.+..+........ .-|........+.....|++..|...+.+.....++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 455566777788888888777655432 2244455568888899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 242 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
+++.|..-|.+..+ +.|+.+ ...|.+.-.+.-.|+.+.|..++.....
T Consensus 149 r~~~Ar~ay~qAl~--L~~~~p------------------------------~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 149 RFDEARRAYRQALE--LAPNEP------------------------------SIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred ChhHHHHHHHHHHH--hccCCc------------------------------hhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999988 555542 4788888888889999999999998887
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 004273 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 322 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 355 (764)
.+. -|...-..+.......|+++.|..+-..-.
T Consensus 197 ~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 197 SPA-ADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CCC-CchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 642 255566667777888889888887765443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.6e-06 Score=51.41 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=27.9
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh
Q 004273 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE 193 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 193 (764)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888763
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00095 Score=61.80 Aligned_cols=119 Identities=8% Similarity=-0.004 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHH-hhccCC--HHHHH
Q 004273 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-FTRLRD--LKSAY 247 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~ 247 (764)
.++.+++...++...+..+ .|...|..+...|...|+++.|...++...+..+.+...+..+..+ +...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4444555555555444432 2444555555555555555555555555555555555555555554 244444 35666
Q ss_pred HHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 248 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
+++++..+ ..|+. ..++..+...+.+.|++++|+..|+++.+.
T Consensus 131 ~~l~~al~--~dP~~------------------------------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALA--LDANE------------------------------VTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHH--hCCCC------------------------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666655 33332 135555555666666666666666666554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0017 Score=59.37 Aligned_cols=157 Identities=11% Similarity=0.001 Sum_probs=115.0
Q ss_pred CChhHHHHHHHHHHH---cC-ccccHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004273 101 PDPLFVMETWRMMEE---KE-IGLNNK-CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 101 ~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
.++++..+++..+.. .| ..++.+ .|..++.+....|+.+.|...++++..+.+-.+.+.-...| -+--.|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchh
Confidence 466777777777664 23 445554 56777778888899999999999887665333333222222 233468999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
+|+++|+...+.. +.|.+++-.=+......|.--.|++-+....+.+..|...|..+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999998876 336677766666666777777888888888888899999999999999999999999999998876
Q ss_pred hhhcccc
Q 004273 256 LAMMGKL 262 (764)
Q Consensus 256 ~~~~~~~ 262 (764)
+.|..
T Consensus 183 --~~P~n 187 (289)
T KOG3060|consen 183 --IQPFN 187 (289)
T ss_pred --cCCCc
Confidence 55554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0011 Score=73.28 Aligned_cols=133 Identities=14% Similarity=0.039 Sum_probs=104.2
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh-h
Q 004273 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV-T 195 (764)
Q Consensus 118 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 195 (764)
.+.++..+-.|.....+.|.+++|..+++...+. .|+ ......+..++.+.+++++|+..+++..+. .|+.. .
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~ 156 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSARE 156 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHH
Confidence 4556778888888888888899998888888653 344 446677778888888899998888888876 34444 4
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
...+-.++.+.|++++|..+|+++....+.+..++..+..++.+.|+.++|...|+...+
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555677888889999999888886666688888888888888999999888888876
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.1e-05 Score=50.15 Aligned_cols=33 Identities=33% Similarity=0.665 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 004273 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p 542 (764)
.+||++|.+|++.|+++.|..+|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777666
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0014 Score=72.32 Aligned_cols=220 Identities=13% Similarity=0.063 Sum_probs=154.8
Q ss_pred ccHHHHHHHHHHHHccCCHHHHH-HHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 004273 120 LNNKCYLLMMQALCKGGYLEEAS-NLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE 198 (764)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 198 (764)
.++.....+=.+.+.-|..++|- +++.+..+ ++....+-....+++.-+....+. ...+...+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 91 (694)
T PRK15179 26 SGPTILDLLEAALAEPGESEEAGRELLQQARQ-------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVL 91 (694)
T ss_pred CCcHHHhHHHHHhcCcccchhHHHHHHHHHHH-------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHH
Confidence 34555555556677778777774 45554421 333333333333333333333322 3446788888
Q ss_pred HHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccC
Q 004273 199 LLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLD 278 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (764)
|.......|.+++|..+++.+.+..|.+......+..++.+.+++++|...+++... ..|+.
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~---------------- 153 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSS---------------- 153 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCC----------------
Confidence 888888999999999999999998888899999999999999999999999999988 45554
Q ss_pred CCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004273 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~ 358 (764)
....+.+..++.+.|++++|..+|++....+ .-+..++..+-.++-..|+.++|...|+...+.-
T Consensus 154 --------------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 154 --------------AREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred --------------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 2477788888999999999999999998743 2236678888888889999999999999988753
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004273 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393 (764)
Q Consensus 359 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 393 (764)
- +....|+.++ +++..-..+++.+...+
T Consensus 219 ~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 219 G-DGARKLTRRL------VDLNADLAALRRLGVEG 246 (694)
T ss_pred C-cchHHHHHHH------HHHHHHHHHHHHcCccc
Confidence 2 2334444333 34455556666665443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00026 Score=61.78 Aligned_cols=100 Identities=10% Similarity=-0.171 Sum_probs=48.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcc
Q 004273 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
+...+...|++++|...|+.....+ +.+...|..+..++.+.|++++|+..|+......+ .+..++..+..++...|
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcC
Confidence 3444455555555555555544322 22334455555555555555555555555554322 24444444444555555
Q ss_pred ChhHHHHHHHHHHccCCCCHHhH
Q 004273 208 NLSAVHEIWEDYIKHYSLSIFSL 230 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~ 230 (764)
++++|...|+...+..+.++..+
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHH
Confidence 55555555555554444444444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0064 Score=61.40 Aligned_cols=118 Identities=11% Similarity=0.066 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHH
Q 004273 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 294 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 372 (764)
+.+......+...++..+|.+.++.+... .|+.. ..-.+-.++.+.|++.+|..+++........ |+..|..|..+
T Consensus 341 ~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqa 417 (484)
T COG4783 341 YYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQA 417 (484)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHH
Confidence 44455555666666666666666666554 34432 2333445566666666666666666555443 55666666666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCH
Q 004273 373 CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDI 429 (764)
Q Consensus 373 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~ 429 (764)
|...|+..++.....+ +|.-.|+++.|...+...++.++++.
T Consensus 418 y~~~g~~~~a~~A~AE---------------~~~~~G~~~~A~~~l~~A~~~~~~~~ 459 (484)
T COG4783 418 YAELGNRAEALLARAE---------------GYALAGRLEQAIIFLMRASQQVKLGF 459 (484)
T ss_pred HHHhCchHHHHHHHHH---------------HHHhCCCHHHHHHHHHHHHHhccCCc
Confidence 6666665555443322 34445666666666666555333333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00011 Score=64.23 Aligned_cols=105 Identities=10% Similarity=-0.074 Sum_probs=63.1
Q ss_pred hccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCcc
Q 004273 40 LTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIG 119 (764)
Q Consensus 40 ~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 119 (764)
|.+.+..+|+. +......+...|++++|+..|+.....+ +.+...+..+..++...|++++|...|+...+.+ +
T Consensus 16 ~~~al~~~p~~----~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p 89 (144)
T PRK15359 16 LKQLLSVDPET----VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-A 89 (144)
T ss_pred HHHHHHcCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 33344555552 2223445566666677777666666554 3455556666666666666666766666666654 4
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004273 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 150 (764)
.+...+..+..++...|++++|+..|+...+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666666666666666666666666643
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.06 Score=58.64 Aligned_cols=94 Identities=20% Similarity=0.197 Sum_probs=59.2
Q ss_pred HHHHHHHHHccCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004273 547 YNIMIDCCSIIRCFK---SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623 (764)
Q Consensus 547 ~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 623 (764)
.+.|+..|.+.++.. +|..+++.-.... +-|..+--.+|..|+--|-+..|.++|..+.-..+.-|...|..+ +-
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~-~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF-RR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHH-HH
Confidence 456677777777655 3444444444331 223334456788888888889999998888767777766555433 34
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 004273 624 ACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 624 ~~~~g~~~~a~~~~~~m~~ 642 (764)
+...|++..+...++....
T Consensus 517 ~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HHhcccchhHHHHHHHHHH
Confidence 5566777777666665553
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.8e-05 Score=49.20 Aligned_cols=33 Identities=33% Similarity=0.333 Sum_probs=25.1
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 004273 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK 191 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 191 (764)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.016 Score=58.70 Aligned_cols=147 Identities=12% Similarity=0.014 Sum_probs=122.8
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccc
Q 004273 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 274 (764)
-|...+. +...|+++.|+..+..+.+..|.|++........+.+.++..+|.+.++.+.. ..|+.+
T Consensus 309 ~YG~A~~-~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~----------- 374 (484)
T COG4783 309 QYGRALQ-TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSP----------- 374 (484)
T ss_pred HHHHHHH-HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCcc-----------
Confidence 3444443 45678999999999999999999999999999999999999999999999998 566642
Q ss_pred cccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 004273 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 354 (764)
..+-.+..++.+.|++.+|+.++++..... +-|...|..|-.+|...|+..++.....+
T Consensus 375 -------------------~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE- 433 (484)
T COG4783 375 -------------------LLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE- 433 (484)
T ss_pred -------------------HHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH-
Confidence 577788999999999999999999988764 55888999999999999998887765544
Q ss_pred HHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004273 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393 (764)
Q Consensus 355 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 393 (764)
.|...|+++.|...+....+..
T Consensus 434 -----------------~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 434 -----------------GYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -----------------HHHhCCCHHHHHHHHHHHHHhc
Confidence 4566788999998888887653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00045 Score=59.96 Aligned_cols=96 Identities=11% Similarity=-0.027 Sum_probs=54.6
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHH
Q 004273 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 168 (764)
....+...+...|+++.|.+.++.....+ +.+...+..+...|.+.|++++|..+|+...+.. +.+...+..+...|
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~ 95 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHH
Confidence 34444455555566666666666665543 3355555566666666666666666666554322 23344555555566
Q ss_pred hccCCHHHHHHHHHHHHhc
Q 004273 169 AKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~ 187 (764)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666665553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.017 Score=53.64 Aligned_cols=185 Identities=15% Similarity=0.091 Sum_probs=120.2
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhH-HHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004273 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLF-VMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 136 (764)
+.++|...|.+...+.- +.... .++...+..+.......++.+. .-++.+.+.......+......-...|+..|
T Consensus 47 ~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~ 122 (299)
T KOG3081|consen 47 MYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDG 122 (299)
T ss_pred HHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCC
Confidence 34567777776554432 22221 2222233333333333344333 3455556665555555455555566789999
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----ccChhHH
Q 004273 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW----QKNLSAV 212 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a 212 (764)
++++|.+..+.. . +......=+..+.+..+++-|.+.++.|.+. -+..|.+.|..++.+ .+.+..|
T Consensus 123 ~~deAl~~~~~~-~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 123 DFDEALKALHLG-E------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred ChHHHHHHHhcc-c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhH
Confidence 999999988752 1 2233333445567788999999999999985 266677766666553 4457788
Q ss_pred HHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 004273 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 256 (764)
.-+|+++....+|++.+.+....++...|++++|..+++....+
T Consensus 193 fyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 193 FYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888764
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0067 Score=56.16 Aligned_cols=169 Identities=15% Similarity=0.107 Sum_probs=96.7
Q ss_pred HHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 004273 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544 (764)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~ 544 (764)
.+.+.......+......-...|.+.|++++|++..... .... ....=+..+.+..+.+-|.+.+++|.+- -+.
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-~~lE--~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-ENLE--AAALNVQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-chHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 333444444444333334445577777777777776552 2222 2222234445666777777777777763 355
Q ss_pred HHHHHHHHHHHcc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004273 545 ATYNIMIDCCSII----RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620 (764)
Q Consensus 545 ~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 620 (764)
.|.+-|..++.+. +.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++...... ..++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHH
Confidence 6666666665542 4566777777777654 45677777777777777777777777777776543 3345555555
Q ss_pred HHHHHHcCCH-HHHHHHHHHHH
Q 004273 621 LKKACEKGRI-DVIEFIIEQMH 641 (764)
Q Consensus 621 i~~~~~~g~~-~~a~~~~~~m~ 641 (764)
|..-...|.. +-..+.+.+++
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHH
Confidence 5444444443 33444555554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0075 Score=55.38 Aligned_cols=187 Identities=9% Similarity=-0.029 Sum_probs=139.7
Q ss_pred cCCcchHHHHHHHhhhc---c-CCCCcch-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHH
Q 004273 65 RGERSRASHLLLNLGHA---H-HSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLE 139 (764)
Q Consensus 65 ~~~~~~A~~~~~~~~~~---~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 139 (764)
..++++.++++.++... + ..++..+ |..++-+....|..+.|...+..+..+= +-+..+-..-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 45678888888887643 2 2233332 5555556666788889999999988762 333333222223355679999
Q ss_pred HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHH
Q 004273 140 EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 140 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (764)
+|+++++.+.+.+ +.|.+++-.=+...-..|+.-+|++-+....+. +..|...|..+-..|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999998765 557777777676666778888888888888776 4569999999999999999999999999999
Q ss_pred HccCCCCHHhHHHHHHHhhccC---CHHHHHHHHHHHHH
Q 004273 220 IKHYSLSIFSLRKFVWSFTRLR---DLKSAYETLQHMVA 255 (764)
Q Consensus 220 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 255 (764)
+=..|.++-.+..+...+.-.| +.+.|.+.|.+..+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9877888888888877765554 56778999999887
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00081 Score=68.42 Aligned_cols=124 Identities=9% Similarity=-0.023 Sum_probs=96.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccC
Q 004273 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 241 (764)
..|+..+...++++.|+.+|+++.+.. |+. ...+.+.+...++-.+|.+++.+..+..+.+..........+.+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 344455556688888888888888763 443 3446667777777778888888888777778777777788888999
Q ss_pred CHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 242 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
+.+.|.++.+++.+ ..|+.+ .+|..|..+|.+.|+++.|+..++.+.-
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f------------------------------~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEF------------------------------ETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhH------------------------------HHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999988 666662 5899999999999999999988888753
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.3e-05 Score=46.26 Aligned_cols=31 Identities=29% Similarity=0.583 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 004273 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~ 540 (764)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00099 Score=67.78 Aligned_cols=127 Identities=15% Similarity=0.058 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
.....|+..+...++++.|+.+|+++.+.+ |+ ....|++.+...++-.+|.+++.+..... +-+......-...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344566677777899999999999997653 55 44558888888899999999999988753 2255556666667
Q ss_pred HHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
+.+.++++.|.++.+++.+..|.+..+|..|..+|.+.|+++.|+-.++.++-
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88999999999999999998888889999999999999999999999998874
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0007 Score=69.12 Aligned_cols=126 Identities=16% Similarity=0.173 Sum_probs=100.6
Q ss_pred cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHH
Q 004273 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
..+.+......+++.+....+++.+..++-+.....-.... ..++.+++|+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~-----------------------------~~~t~ha~vR 111 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYL-----------------------------LPSTHHALVR 111 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccc-----------------------------cCccHHHHHH
Confidence 35666777777888888888888898888888753111100 0147789999
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhc
Q 004273 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376 (764)
Q Consensus 302 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 376 (764)
.|.+.|..+.++.+++.=...|+-||.+|++.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 112 ~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 112 QCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998888776777776555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0018 Score=56.77 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=62.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh--hhHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE--VTYTELL 200 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll 200 (764)
.|..++..+ ..++...+...++.+...++-.+ .....-.+...+...|++++|...|+........|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 25555555555555544321100 0011222334455556666666666665554322221 1222344
Q ss_pred HHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHH
Q 004273 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 252 (764)
..+...|++++|...++.. ......+..+....++|.+.|+.++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555566666666665442 22233344555666677777777777777765
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0011 Score=52.48 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=38.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004273 551 IDCCSIIRCFKSASALVSMMVRDGF-YPQTMTYTALIKILLDYG--------DFDEALNLLDLVSLEGIPHDVLLYNTIL 621 (764)
Q Consensus 551 l~~~~~~~~~~~a~~~~~~~~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li 621 (764)
|..|...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444555555555555555555 555555555555554432 2233445555555555555555555555
Q ss_pred HHHH
Q 004273 622 KKAC 625 (764)
Q Consensus 622 ~~~~ 625 (764)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0017 Score=56.32 Aligned_cols=94 Identities=10% Similarity=-0.070 Sum_probs=42.4
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc
Q 004273 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
...+...+.+.|++++|...|+.....+. .+...+..+...+...|++++|...++...+..+.+...+..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 33344444455555555555555444321 13334444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 004273 241 RDLKSAYETLQHMVA 255 (764)
Q Consensus 241 g~~~~A~~~~~~m~~ 255 (764)
|+++.|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00088 Score=68.40 Aligned_cols=119 Identities=9% Similarity=0.170 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004273 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTC--GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586 (764)
Q Consensus 509 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li 586 (764)
......+++.+....+.+.+..++.+.+.. ....-..|..++++.|.+.|..+.++.++..=...|+-||..++|.||
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 334444555555555555555555555543 111122333456666666666666666665555556666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004273 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627 (764)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 627 (764)
+.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666665555544444555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=7.2e-05 Score=45.26 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=20.8
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 004273 160 VYNSFLGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
+||+|+++|++.|++++|.++|++|++.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.09 Score=52.46 Aligned_cols=109 Identities=14% Similarity=0.195 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004273 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 590 (764)
+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+-.. +-++.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44444555566666666666655542 36666666667777777776665554321 123355666666777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004273 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 639 (764)
+.|+..+|..++.++ .+..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777776666652 113344555666666666554333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00091 Score=52.97 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccC--------ChhHHHHHHHHHHHCCCCCCHHH
Q 004273 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGI-PPNAATYNIMIDCCSIIR--------CFKSASALVSMMVRDGFYPQTMT 581 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~p~~~~ 581 (764)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999999 999999999999987653 34468899999999999999999
Q ss_pred HHHHHHHHHhc
Q 004273 582 YTALIKILLDY 592 (764)
Q Consensus 582 ~~~li~~~~~~ 592 (764)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999988763
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0038 Score=54.71 Aligned_cols=123 Identities=17% Similarity=0.147 Sum_probs=66.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 004273 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ---TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD--VLLYNTIL 621 (764)
Q Consensus 547 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li 621 (764)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......|+ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444444 2566666666666666542 112 12222344566667777777777777766541221 12333455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 004273 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673 (764)
Q Consensus 622 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 673 (764)
..+...|++++|+..++...... .....+...-.+|.+.|++++|+..|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66667777777777765533211 222233334447777777777777665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0047 Score=61.20 Aligned_cols=119 Identities=9% Similarity=-0.006 Sum_probs=73.8
Q ss_pred HHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc-CCHHHHHHHHHHHHHhhhcccchhcccccccccccccC
Q 004273 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL-RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLD 278 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (764)
+..|...|++..|-+++..+ ...|-.. |+++.|++.|++..+.-...+....
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l--------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~------------- 153 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL--------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS------------- 153 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH--------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH-------------
T ss_pred HHHHHhcCcHHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh-------------
Confidence 34566777777776666554 4467777 8999999999988764222221100
Q ss_pred CCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-----cc-cHHHHHHHHHhcCChhHHHHHHH
Q 004273 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-----SH-TYDGFIRAIVSDRGLRNGMEVLK 352 (764)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~-t~~~li~~~~~~~~~~~a~~~~~ 352 (764)
....+..+...+.+.|++++|.++|++........+ .. .|-..+-++...||...|...++
T Consensus 154 -------------a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 154 -------------AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp -------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 014677788889999999999999999876543222 11 12223335556788888888888
Q ss_pred HHHHCC
Q 004273 353 IMQQNN 358 (764)
Q Consensus 353 ~m~~~~ 358 (764)
......
T Consensus 221 ~~~~~~ 226 (282)
T PF14938_consen 221 RYCSQD 226 (282)
T ss_dssp HHGTTS
T ss_pred HHHhhC
Confidence 887653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.1 Score=55.02 Aligned_cols=107 Identities=8% Similarity=0.040 Sum_probs=57.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHH
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 374 (764)
+|+.+...+.....|+.|.+.|..-.. . ...+.++.....+++-..+-..+. -|....-.+.+++.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHH
Confidence 666666666666666666666654321 1 123445555555554444333332 24444555666666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHH
Q 004273 375 KALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM 421 (764)
Q Consensus 375 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 421 (764)
+.|.-++|.+.|-+.... .+.+..|...+++.+|.++-+..
T Consensus 864 svGMC~qAV~a~Lr~s~p------kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLRRSLP------KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred hhchHHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666666555443322 23455566666666666665443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0015 Score=64.32 Aligned_cols=131 Identities=11% Similarity=0.050 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
.+|..+++..-+.+..+.|+.+|.+..+......+++...+++.-+ ..++.+.|.++|+...+. +..+..-|..-+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3566677777777777777777777764433334444444444322 245666677777777665 34455666666677
Q ss_pred HHhccChhHHHHHHHHHHccCCCCH---HhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 203 AVWQKNLSAVHEIWEDYIKHYSLSI---FSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
+...++.+.|..+|+......+++. ..|...+..=.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777776644433 5777888888888888888888888876
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0045 Score=52.10 Aligned_cols=100 Identities=11% Similarity=-0.066 Sum_probs=39.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHH
Q 004273 127 LMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK--NEVTYTELLKLA 203 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~ 203 (764)
.+...+.+.|++++|.+.|+.+.+..+-.+ ....+..+...+.+.|+++.|...|+.+....+.. ....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444444445555444444433221100 01233334444444455555555544444321110 122233333344
Q ss_pred HhccChhHHHHHHHHHHccCCCC
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLS 226 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~ 226 (764)
...++.++|.+.++.+.+..+.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCC
Confidence 44444444444444444433333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0035 Score=61.80 Aligned_cols=144 Identities=8% Similarity=-0.017 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHH--HHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFF--HILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 130 (764)
..|...+....+.+..+.|..+|.+..+.+ ..+...|. +++..+ ..++.+.|..+|+...+. ++.+...|..-+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 456666777778888999999999998543 23334443 444333 246777799999999887 5677888888899
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 004273 131 ALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
.+.+.|+.+.|..+|++.....+-.. ....|...+.-=.+.|+++.+.++.+++.+. .|+...+..++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 99999999999999999875422222 2348999999888999999999999988875 455444444433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.29 Score=48.90 Aligned_cols=107 Identities=19% Similarity=0.169 Sum_probs=61.4
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004273 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625 (764)
Q Consensus 546 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 625 (764)
+.+..|.-|...|....|.++-.+. -.|+...|..-+.+|+..++|++-.++... +-.++-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3344444555556666655554443 236666666777777777777666554332 223466666777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 004273 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672 (764)
Q Consensus 626 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 672 (764)
+.|+..+|..+..+ +. + ..-+..|.+.|+|.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k-----~~-~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IP-D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHh-----CC-h----HHHHHHHHHCCCHHHHHHHH
Confidence 77776666666555 11 1 22355666777777665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00091 Score=52.14 Aligned_cols=80 Identities=11% Similarity=0.190 Sum_probs=48.1
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCChHHHH
Q 004273 592 YGDFDEALNLLDLVSLEGI-PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP-STCHFVFSGYVNCGFHNSAM 669 (764)
Q Consensus 592 ~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~ 669 (764)
.|+++.|+.+++++.+..- .|+...+-.+...|.+.|++++|..++++ . ...|+. .....+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4677777777777765432 12344555577777777777777777776 2 233433 33333344777777777777
Q ss_pred HHHHH
Q 004273 670 EALQV 674 (764)
Q Consensus 670 ~~~~~ 674 (764)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77764
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0059 Score=48.61 Aligned_cols=91 Identities=18% Similarity=-0.038 Sum_probs=42.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 004273 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV 204 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 204 (764)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.|+........ +..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 3344455555566666666665554321 122234444555555555555555555555443211 2233334444444
Q ss_pred hccChhHHHHHHHH
Q 004273 205 WQKNLSAVHEIWED 218 (764)
Q Consensus 205 ~~~~~~~a~~~~~~ 218 (764)
..|+.+.|...+..
T Consensus 80 ~~~~~~~a~~~~~~ 93 (100)
T cd00189 80 KLGKYEEALEAYEK 93 (100)
T ss_pred HHHhHHHHHHHHHH
Confidence 44444444444433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.32 Score=51.50 Aligned_cols=314 Identities=12% Similarity=0.093 Sum_probs=153.1
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCC--------chhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 004273 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ-NNLKP--------QDSTIATLSVECSKALELDLAEALLDQISRCTNP 395 (764)
Q Consensus 325 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 395 (764)
.|.+..|..+.......-.++.|...|-.... .|++. +...-.+=+.+| -|++++|++++-++..+ |
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr-D- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR-D- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh-h-
Confidence 57777787777777666677777776655543 22321 111111122222 27888888888777665 2
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHhhc--cCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHH------HHH-
Q 004273 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK--LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA------IEM- 466 (764)
Q Consensus 396 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~- 466 (764)
..|..+.+.|++-...++++.--.+ -.--...++.+-..++....++++.+.+..-...+...+ .+.
T Consensus 765 ----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~ 840 (1189)
T KOG2041|consen 765 ----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGE 840 (1189)
T ss_pred ----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhh
Confidence 2334444555554444444321100 000011222222222222233333333222111111100 011
Q ss_pred -HHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 004273 467 -DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545 (764)
Q Consensus 467 -~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~ 545 (764)
+.....++.+....-.+.+++.+.|.-++|.+.|-+.+.+. +.+.+|...+++.+|.++-++..- |...
T Consensus 841 LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk------aAv~tCv~LnQW~~avelaq~~~l----~qv~ 910 (1189)
T KOG2041|consen 841 LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK------AAVHTCVELNQWGEAVELAQRFQL----PQVQ 910 (1189)
T ss_pred HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH------HHHHHHHHHHHHHHHHHHHHhccc----hhHH
Confidence 12233455666777778889999999888888876653322 345667777778888877665432 2222
Q ss_pred HHH--------------HHHHHHHccCChhHHHHHHHHHHHC----CCCCCHH----HHHHH-HHHH----------Hhc
Q 004273 546 TYN--------------IMIDCCSIIRCFKSASALVSMMVRD----GFYPQTM----TYTAL-IKIL----------LDY 592 (764)
Q Consensus 546 t~~--------------~ll~~~~~~~~~~~a~~~~~~~~~~----g~~p~~~----~~~~l-i~~~----------~~~ 592 (764)
|.. -.|..+.+.|..-.|-+++.+|.+. +.+|-.. ...+| +.-+ -+.
T Consensus 911 tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~ 990 (1189)
T KOG2041|consen 911 TLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKH 990 (1189)
T ss_pred HHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 211 1233445566665666666666532 3332211 11111 1111 134
Q ss_pred CCHHHHHHHHHHHHHC---CCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHH
Q 004273 593 GDFDEALNLLDLVSLE---GIP------HDVLLYNTILKKACEKGRIDVIEFIIEQMHQN-KVQPDPSTCHFVF 656 (764)
Q Consensus 593 g~~~~A~~~~~~m~~~---~~~------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll 656 (764)
|..++|.++++..... .+. .....|..|..--...|.++.|...--.+.+. .+-|....|..+.
T Consensus 991 g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllA 1064 (1189)
T KOG2041|consen 991 GFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLA 1064 (1189)
T ss_pred CcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHH
Confidence 6666666655543211 010 11234445555556778888888765555543 3555555555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.57 Score=50.40 Aligned_cols=157 Identities=10% Similarity=0.026 Sum_probs=81.4
Q ss_pred HHHhcCCcchHHHHHHHhh--------hccCCCCcchHHHH-----HHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH
Q 004273 61 DALCRGERSRASHLLLNLG--------HAHHSLGADDFFHI-----LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 61 ~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (764)
++.+.-++++-+++.+.+. .-|++.+..-|.++ +.-+...+.+..|+++...+...-... ..+|..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 3444555666555555443 33555555555544 333344466777777776664322111 556666
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCC--CCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC----CChhhHHHHHH
Q 004273 128 MMQALCKGGYLEEASNLIYFLGERYGI--YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG----KNEVTYTELLK 201 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~ 201 (764)
....+.+..+..+ ..+++.+.++.+. .| ..+|..+.+..-..|+.+-|..+++.=.+.+-+ .+..-+...+.
T Consensus 477 Wa~~kI~~~d~~d-~~vld~I~~kls~~~~~-~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 477 WARRKIKQSDKMD-EEVLDKIDEKLSAKLTP-GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHHHHHhccCccc-hHHHHHHHHHhcccCCC-ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHH
Confidence 6666666533221 2333333333332 22 346777777667788888888877653322111 12223444555
Q ss_pred HHHhccChhHHHHHHHHHH
Q 004273 202 LAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~ 220 (764)
-+...||.+....++-.+.
T Consensus 555 kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HHHhcCCchhHHHHHHHHH
Confidence 5566666666555555444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.011 Score=49.72 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=47.0
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCc--cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHH
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKEI--GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLG 166 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~ 166 (764)
+..+...+.+.|+++.|.+.|+.+.+..- +.....+..+..++.+.|++++|...|+.+....+-.+ ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444444555555555555555554321 00122344455555555555555555555543221111 1223444455
Q ss_pred HHhccCCHHHHHHHHHHHHhc
Q 004273 167 ACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~ 187 (764)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555666666665555554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.4 Score=48.23 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 004273 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY-NTILK 622 (764)
Q Consensus 545 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~ 622 (764)
..|...+++..+...++.|..+|-++.+.| +.+++..++++|.-++. |+..-|.++|+.-... -||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456677777778888999999999999888 67889999999988775 7778899999875432 3454443 45666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004273 623 KACEKGRIDVIEFIIEQMHQNKVQPD--PSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 623 ~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
-+..-++-+.|..+|+...+. +.-+ ...|..+|.-=+.-|+...+..+=++|..
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 677888989999999966542 3333 56788888877888999888887777654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.014 Score=52.75 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHcc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004273 541 PPNAATYNIMIDCCSII-----RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 615 (764)
..|..+|..++..|.+. |.++=....+..|.+.|+.-|..+|+.|++.+=+ |.+ .|..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------cccc-
Confidence 45777777777777643 6667777778888888888888888888887765 322 1221
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 004273 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664 (764)
Q Consensus 616 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 664 (764)
.+.++..-|- .+.+-|++++++|...|+.||..++..|++++.+.+.
T Consensus 107 ~fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111121 2345677788888888888888888888877776664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.031 Score=48.23 Aligned_cols=88 Identities=9% Similarity=-0.070 Sum_probs=48.8
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH
Q 004273 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
.+...|++++|..+|+-.....+. +..-|..|--++-..|++++|...|.....-.+.|+..+-.+..++...|+.+.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 334455555555555555543211 2233334444444555555666555555555555666666666666667777777
Q ss_pred HHHHHHHHH
Q 004273 247 YETLQHMVA 255 (764)
Q Consensus 247 ~~~~~~m~~ 255 (764)
.+.|+....
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 777766654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.67 Score=49.87 Aligned_cols=329 Identities=13% Similarity=0.118 Sum_probs=182.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh--hHHHHHHHHHHHCCCCCchhHHHHHHHH
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL--RNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~li~~ 372 (764)
+-..+|.-+...+.+..|+++-.-+...-..- ...|.....-+.+..+. +++.+..++=...... ....|..+..-
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~ 516 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARR 516 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHH
Confidence 44567888888999999999887775321111 34444444444444322 2233322222222223 45567788888
Q ss_pred HHhcCCHHHHHHHHHHHhhCC-------CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCc
Q 004273 373 CSKALELDLAEALLDQISRCT-------NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAP 445 (764)
Q Consensus 373 ~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~ 445 (764)
.-.+|+.+.|..+++.=+..+ +..-+...+.-..+.|+.+-...++-+|... -+...|...+.
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~--~~~s~l~~~l~-------- 586 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK--LNRSSLFMTLR-------- 586 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH--HHHHHHHHHHH--------
Confidence 888999999999887654433 4444666777788888888888887777651 11111111111
Q ss_pred hhhchhhhhhhhHHHHHHHHHHHHH-CCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc-----CCCCChhhHHHHHHHH
Q 004273 446 YEEGNMFSQVDSAKRINAIEMDMAR-NNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-----KTPLGTPTYNTVLHSL 519 (764)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~~~li~~~ 519 (764)
.......++.+..+ .+- ..+-+.|-...+...+-.+.-+. ...+-........+.+
T Consensus 587 -----------~~p~a~~lY~~~~r~~~~-------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~ 648 (829)
T KOG2280|consen 587 -----------NQPLALSLYRQFMRHQDR-------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAF 648 (829)
T ss_pred -----------hchhhhHHHHHHHHhhch-------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHH
Confidence 11111122222211 111 11222232222222222221111 0011111222223333
Q ss_pred HHcCC----------hhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004273 520 VEAQE----------SHRAMEIFKQMKT-CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 520 ~~~~~----------~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
++... ..+-+.+.+.+.. .|..-...|.+--+.-+...|+..+|.++-.+. -.||-..|-.=+.+
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~a 724 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTA 724 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHH
Confidence 33322 1112222333322 132333445555566677778888888877665 34788888888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHH
Q 004273 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668 (764)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 668 (764)
++..+++++-+++-+.+. .+.-|.-+..+|.+.|+.++|.+++.+.. |.. -...+|.+.|++.+|
T Consensus 725 La~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~--~l~-------ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 725 LADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG--GLQ-------EKVKAYLRVGDVKEA 789 (829)
T ss_pred HHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC--ChH-------HHHHHHHHhccHHHH
Confidence 999999988887776643 25677778889999999999998887653 221 356788899998888
Q ss_pred HHHH
Q 004273 669 MEAL 672 (764)
Q Consensus 669 ~~~~ 672 (764)
.+.-
T Consensus 790 ad~A 793 (829)
T KOG2280|consen 790 ADLA 793 (829)
T ss_pred HHHH
Confidence 7654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.008 Score=47.82 Aligned_cols=93 Identities=12% Similarity=-0.003 Sum_probs=47.7
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc
Q 004273 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
+..+...+...|++++|...++...+.... +...+..+...+...++++.|.+.++...+..+.+..++..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 344555556666666666666666554211 2234444444455555555555555555544444444444555555555
Q ss_pred CCHHHHHHHHHHHH
Q 004273 241 RDLKSAYETLQHMV 254 (764)
Q Consensus 241 g~~~~A~~~~~~m~ 254 (764)
|+.+.|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555544443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.026 Score=55.96 Aligned_cols=206 Identities=12% Similarity=0.074 Sum_probs=133.4
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCC-----cchHHHHHHHhhCCCChhHHHHHHHHHHH----cCc
Q 004273 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLG-----ADDFFHILNYCARSPDPLFVMETWRMMEE----KEI 118 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~ 118 (764)
.+.....+......|...++|++|.+.|.+........+ ...|.....+|.+. +++.|.+.+++... .|
T Consensus 31 ~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G- 108 (282)
T PF14938_consen 31 YEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG- 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-
Confidence 345566777778889999999999999988754321111 12366666666555 89999999988765 33
Q ss_pred cccH--HHHHHHHHHHHcc-CCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 004273 119 GLNN--KCYLLMMQALCKG-GYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK 191 (764)
Q Consensus 119 ~~~~--~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 191 (764)
.++. ..+..+...|... |++++|++.|++..+-.....+ ..++..+...+.+.|++++|.++|++....-...
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 3333 3677888889888 9999999999887542211111 2356778888999999999999999987653221
Q ss_pred -----Chh-hHHHHHHHHHhccChhHHHHHHHHHHccC---C--CCHHhHHHHHHHhhcc--CCHHHHHHHHHHHHH
Q 004273 192 -----NEV-TYTELLKLAVWQKNLSAVHEIWEDYIKHY---S--LSIFSLRKFVWSFTRL--RDLKSAYETLQHMVA 255 (764)
Q Consensus 192 -----~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~--~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~ 255 (764)
+.. .|-..+-++...||+..|.+.++...... . ........|+.++-.. ..+..|+.-|+.+.+
T Consensus 189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 121 22233335667899999999999988642 2 2244566777777543 356667666666544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.021 Score=49.16 Aligned_cols=95 Identities=8% Similarity=-0.069 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004273 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 134 (764)
+-.....+...|++++|..+|+.+...+ +-+..-|..|.-+|...|++..|++.|......+ +-|+..+..+...+..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3344666778899999999999888765 3344445566666667799999999999988886 4677788888888999
Q ss_pred cCCHHHHHHHHHHHhhh
Q 004273 135 GGYLEEASNLIYFLGER 151 (764)
Q Consensus 135 ~g~~~~A~~~~~~~~~~ 151 (764)
.|+.+.|++-|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999998877653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.026 Score=51.19 Aligned_cols=91 Identities=7% Similarity=-0.257 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 004273 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
...+..+...+...|++++|...|++..+...-.++ ...+..+...+.+.|++++|...++...+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 345666777777788888888888877643221221 346777777777788888888888777764221 334444444
Q ss_pred HHHHhccChhHHH
Q 004273 201 KLAVWQKNLSAVH 213 (764)
Q Consensus 201 ~~~~~~~~~~~a~ 213 (764)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 4555555544433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.011 Score=53.47 Aligned_cols=106 Identities=15% Similarity=0.220 Sum_probs=70.7
Q ss_pred CCCChhhHHHHHHHHHHc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 004273 505 TPLGTPTYNTVLHSLVEA-----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579 (764)
Q Consensus 505 ~~~~~~~~~~li~~~~~~-----~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~ 579 (764)
...+-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+ |.+ .|..
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n 106 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRN 106 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------cccc
Confidence 345666777777777654 6677777888899999999999999999998765 322 1111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004273 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 629 (764)
. +-++..-|- .+-+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 107 ~-fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 F-FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred H-HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1 111111111 2345677777777777777887777777777766654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.19 Score=48.19 Aligned_cols=175 Identities=13% Similarity=0.032 Sum_probs=100.5
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCc-ch---HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004273 58 QIVDALCRGERSRASHLLLNLGHAHHSLGA-DD---FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 133 (764)
....+...|++++|++.|+.+.... |.. .. ...+..++.+.++++.|...+++..+........-|...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 3555667788888888888887654 332 22 13445666777888888888888877642111122222222222
Q ss_pred c--cC---------------C---HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh
Q 004273 134 K--GG---------------Y---LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE 193 (764)
Q Consensus 134 ~--~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 193 (764)
. .+ + ..+|...|+.+.++ |-...-..+|..-+..++.. .-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~---la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDR---LAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHH---HHH
Confidence 1 11 1 12333444444333 22223344444444333321 000
Q ss_pred hhHHHHHHHHHhccChhHHHHHHHHHHccCC---CCHHhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004273 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYS---LSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
.. -.+.+.|.+.|.+..|..-++.+++..+ ....+...++.+|.+.|..+.|..+...+.
T Consensus 177 ~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11 1345568888899889999999887644 445567778889999999999988776554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0024 Score=49.70 Aligned_cols=80 Identities=13% Similarity=-0.092 Sum_probs=44.5
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhccChhHHH
Q 004273 135 GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE-VTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~ 213 (764)
.|+++.|+.+|+++.+.....++...+-.+..+|.+.|++++|..+++. ... .|+. ...-.+..++.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4677888888887766543222334445577777778888888887777 222 2222 22223344455555555555
Q ss_pred HHHH
Q 004273 214 EIWE 217 (764)
Q Consensus 214 ~~~~ 217 (764)
+.++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.18 Score=52.81 Aligned_cols=61 Identities=10% Similarity=0.121 Sum_probs=42.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCH
Q 004273 362 QDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDI 429 (764)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~ 429 (764)
+..+...+...+.+...+..|-++|..|.+. ..++......+++.+|+.+-+...+ ..||.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe-~~~dV 806 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPE-FKDDV 806 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCcc-ccccc
Confidence 3344555555566667788888888888754 4567778888899999888776655 44554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.022 Score=51.49 Aligned_cols=85 Identities=9% Similarity=-0.248 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHH-cCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHH
Q 004273 103 PLFVMETWRMMEE-KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLC 180 (764)
Q Consensus 103 ~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 180 (764)
+..+...+..+.+ .+.......|..+...+...|++++|+..|++.....+-++ ...+|..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444432 22222234455556666666777777777666643221111 123556666666666666666666
Q ss_pred HHHHHhc
Q 004273 181 LDLMDSR 187 (764)
Q Consensus 181 ~~~m~~~ 187 (764)
++.....
T Consensus 95 ~~~Al~~ 101 (168)
T CHL00033 95 YFQALER 101 (168)
T ss_pred HHHHHHh
Confidence 6666553
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.15 Score=44.68 Aligned_cols=103 Identities=12% Similarity=-0.054 Sum_probs=47.1
Q ss_pred CCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004273 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 164 (764)
|+...-..|..+....|+..+|...|++...--+..|....-.+.++....+++..|...++.+.+-..-..+..+--.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 33333334444555555555555555554443333444444455555555555555555555544322111111133334
Q ss_pred HHHHhccCCHHHHHHHHHHHHhc
Q 004273 165 LGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
.+.|...|....|+..|+.....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh
Confidence 44455555555555555555443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.044 Score=49.71 Aligned_cols=89 Identities=15% Similarity=-0.015 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004273 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN--AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 587 (764)
..+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3556666666677777777777777665432221 2455555566666666666666666666532 113444445555
Q ss_pred HHHhcCCHHHHH
Q 004273 588 ILLDYGDFDEAL 599 (764)
Q Consensus 588 ~~~~~g~~~~A~ 599 (764)
.|...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 555555544433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.087 Score=49.16 Aligned_cols=178 Identities=13% Similarity=0.062 Sum_probs=101.3
Q ss_pred hhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccC--CCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHH
Q 004273 49 ESISKATQMQIVDALCRGERSRASHLLLNLGHAHH--SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYL 126 (764)
Q Consensus 49 ~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 126 (764)
+.+...+-.....+...|++++|+..|+.+..... +........+..++-+.|+++.|...++.+++.........+.
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 33444455557778899999999999999987642 1222346677788889999999999999988863111111222
Q ss_pred HHHHHHHcc-------------CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh
Q 004273 127 LMMQALCKG-------------GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE 193 (764)
Q Consensus 127 ~li~~~~~~-------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 193 (764)
..+.+.+.. +...+|...|+ .++.-|-...-..+|...+..+... .-.
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~----------------~li~~yP~S~y~~~A~~~l~~l~~~---la~ 142 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFE----------------ELIKRYPNSEYAEEAKKRLAELRNR---LAE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHH----------------HHHHH-TTSTTHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHH----------------HHHHHCcCchHHHHHHHHHHHHHHH---HHH
Confidence 222222211 11223344444 4444444455555665555554432 011
Q ss_pred hhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHH---hHHHHHHHhhccCCHHHH
Q 004273 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIF---SLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A 246 (764)
. --.+.+.|.+.|.+..|..-++.+++..+.+.. +.-.++.+|.+.|..+.|
T Consensus 143 ~-e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 143 H-ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp H-HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred H-HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 1 122456678888888888888888887555544 456667778888877644
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.013 Score=60.02 Aligned_cols=90 Identities=12% Similarity=-0.076 Sum_probs=51.8
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
...+...|++++|+++|++.++.+ +-+...|..+..++...|+++.|+..++.+++.+ +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344455566666666666666554 2334445555555666666666666666666553 33445555566666666666
Q ss_pred HHHHHHHHHHhh
Q 004273 139 EEASNLIYFLGE 150 (764)
Q Consensus 139 ~~A~~~~~~~~~ 150 (764)
++|+..|++..+
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.03 Score=50.59 Aligned_cols=92 Identities=15% Similarity=0.051 Sum_probs=46.6
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004273 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYP--QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623 (764)
Q Consensus 546 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 623 (764)
.|..+...+...|++++|...|+........| ...+|..+...|...|++++|++.+++..... +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 34444445555566666666666665432111 12355566666666666666666666665431 1123344444444
Q ss_pred HH-------HcCCHHHHHHHHH
Q 004273 624 AC-------EKGRIDVIEFIIE 638 (764)
Q Consensus 624 ~~-------~~g~~~~a~~~~~ 638 (764)
+. ..|+++.|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 44 5555554433333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.024 Score=58.06 Aligned_cols=103 Identities=20% Similarity=0.104 Sum_probs=76.9
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC
Q 004273 94 LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 173 (764)
...+...|+++.|++.|++.++.+ +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCC
Confidence 344556788889999998888875 4566778888888888899999999888887543 2355577888888888899
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 004273 174 MVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
+++|+..|+...+. .|+.......+.
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l~ 111 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 99999988888874 455555444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.067 Score=50.86 Aligned_cols=102 Identities=9% Similarity=0.093 Sum_probs=83.9
Q ss_pred HHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCcc
Q 004273 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (764)
+.+.+++.+|...|...++-.+.|.+-|..-..+|++.|..+.|++--+.... +.|.-
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~y-------------------- 148 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHY-------------------- 148 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHH--------------------
Confidence 56788899999999999998889999999999999999999999888888776 44443
Q ss_pred CCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004273 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338 (764)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 338 (764)
..+|..|-.+|...|++++|++.|++.++ +.|+..+|-.=+...
T Consensus 149 ----------skay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 149 ----------SKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred ----------HHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 25899999999999999999999988877 478888776655443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.15 Score=47.37 Aligned_cols=142 Identities=11% Similarity=0.007 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHH-----H
Q 004273 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA-----T 368 (764)
Q Consensus 294 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-----~ 368 (764)
..-+.++..+.-.|.+.-...++.+.++...+.+......|.+.-.+.||.+.|...|+...+..-+.|..+.+ .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 35566777777778888888888888876655566667777777778888888888888776644333443333 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHH
Q 004273 369 LSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLF 436 (764)
Q Consensus 369 li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll 436 (764)
....|.-.+++..|...++++.... +++.-|.-.-+..-.|+..+|++..+.|.+ ..|...+-++++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~-~~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ-QDPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc-cCCccchhhhHH
Confidence 3344556678888888888877654 555555544455556888899998888887 446665555544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0091 Score=43.67 Aligned_cols=59 Identities=7% Similarity=-0.038 Sum_probs=44.0
Q ss_pred HHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhccc
Q 004273 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 261 (764)
..+...|++++|.+.|+.+.+..+.+...+..+..++...|++++|..+|+++.+ ..|+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~ 63 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPD 63 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 4566777777777777777777777777888888888888888888888888876 4444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.023 Score=53.90 Aligned_cols=86 Identities=10% Similarity=-0.081 Sum_probs=40.0
Q ss_pred HHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHH
Q 004273 61 DALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEE 140 (764)
Q Consensus 61 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 140 (764)
.+++++++++|+..|...++.. +-++.-|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3444455555555555554443 2333334444445555555555554444444442 2223345555555555555555
Q ss_pred HHHHHHHH
Q 004273 141 ASNLIYFL 148 (764)
Q Consensus 141 A~~~~~~~ 148 (764)
|++.|.+.
T Consensus 168 A~~aykKa 175 (304)
T KOG0553|consen 168 AIEAYKKA 175 (304)
T ss_pred HHHHHHhh
Confidence 55554444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.14 Score=55.17 Aligned_cols=142 Identities=13% Similarity=0.046 Sum_probs=83.8
Q ss_pred CCCChhhHHHHHHHHHHcC-----ChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccC--------ChhHHHHHHHHH
Q 004273 505 TPLGTPTYNTVLHSLVEAQ-----ESHRAMEIFKQMKTCGIPPNA-ATYNIMIDCCSIIR--------CFKSASALVSMM 570 (764)
Q Consensus 505 ~~~~~~~~~~li~~~~~~~-----~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~--------~~~~a~~~~~~~ 570 (764)
.+.+...|...+.+..... ....|..+|++..+. .|+- ..|..+..++.... ++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4556677877777754432 266888888888875 4553 33433333222111 122333333332
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004273 571 VRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649 (764)
Q Consensus 571 ~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 649 (764)
... ....+...|.++.-.....|++++|...+++.... .|+...|..+...|...|+.++|.+.+++... +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 222 12334456666655555667777777777777754 36667777777777777777777777777764 55665
Q ss_pred hhH
Q 004273 650 STC 652 (764)
Q Consensus 650 ~~~ 652 (764)
.+|
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.071 Score=44.27 Aligned_cols=93 Identities=12% Similarity=-0.103 Sum_probs=52.5
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCcccc--HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHh
Q 004273 93 ILNYCARSPDPLFVMETWRMMEEKEIGLN--NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACA 169 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~ 169 (764)
+..++-..|+.++|+.+|++....|.... ...+-.+.++|...|++++|..+|+......+-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 33445566777777777777777664433 23455666677777777777777776654321100 1111112223455
Q ss_pred ccCCHHHHHHHHHHHH
Q 004273 170 KLHSMVHANLCLDLMD 185 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~ 185 (764)
..|+.++|+..+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777777665544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.98 Score=45.74 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHH
Q 004273 595 FDEALNLLDLVSLEGIPHDV----LLYNTILKK--ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668 (764)
Q Consensus 595 ~~~A~~~~~~m~~~~~~p~~----~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 668 (764)
+.+-.++-+-+.+.|++|-. ..-|.|.++ +..+|++.++.-.-..+. .+.|++.+|..+--.+....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHH
Confidence 33344444444445665522 233344333 345677777766555555 3677777766555566667777777
Q ss_pred HHHHHHHH
Q 004273 669 MEALQVLS 676 (764)
Q Consensus 669 ~~~~~~~~ 676 (764)
.+++..+.
T Consensus 515 ~~~l~~LP 522 (549)
T PF07079_consen 515 WEYLQKLP 522 (549)
T ss_pred HHHHHhCC
Confidence 77777654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.39 Score=46.16 Aligned_cols=186 Identities=9% Similarity=-0.017 Sum_probs=110.5
Q ss_pred CcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHH---HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004273 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCY---LLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 162 (764)
++..+-.....+...|+++.|.+.|+.+.... +-+.... -.+..+|.+.+++++|...|++..+.++-.|++ .|.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHH
Confidence 33333334444556789999999999998864 2223332 355677889999999999999988776655554 344
Q ss_pred HHHHHHhc--c---------------CC---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHcc
Q 004273 163 SFLGACAK--L---------------HS---MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222 (764)
Q Consensus 163 ~li~~~~~--~---------------g~---~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (764)
..+.+.+. . .| ...|+..|+.+.+. -|++. -..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~-------------ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQ-------------YTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCCh-------------hHHHHHHHHHHHHHH
Confidence 44444331 1 11 23455555555554 33332 122222222222111
Q ss_pred CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHH
Q 004273 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302 (764)
Q Consensus 223 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 302 (764)
.. ..--.+...|.+.|.+..|..-|+.+.+. -|+.+.. ..+...++.+
T Consensus 174 la---~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~--Yp~t~~~---------------------------~eal~~l~~a 221 (243)
T PRK10866 174 LA---KYELSVAEYYTKRGAYVAVVNRVEQMLRD--YPDTQAT---------------------------RDALPLMENA 221 (243)
T ss_pred HH---HHHHHHHHHHHHcCchHHHHHHHHHHHHH--CCCCchH---------------------------HHHHHHHHHH
Confidence 00 00113455688999999999999999873 2322111 1366678899
Q ss_pred HHccCCHHHHHHHHHHHH
Q 004273 303 CGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 303 ~~~~g~~~~a~~~~~~m~ 320 (764)
|...|..++|.++...+.
T Consensus 222 y~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 222 YRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHcCChHHHHHHHHHHh
Confidence 999999999988777654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.98 Score=44.74 Aligned_cols=286 Identities=13% Similarity=0.047 Sum_probs=180.8
Q ss_pred HHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhh--CCCChhHHHHHHHHHHHcCccccHHH--HHHHHHHHHccCC
Q 004273 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFVMETWRMMEEKEIGLNNKC--YLLMMQALCKGGY 137 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~ 137 (764)
..-.|+-..|.++-.+-.+. ..-|...+..||.+-. -.|+++.|.+-|+-|... |.... ...|.-.--+.|+
T Consensus 94 AagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 94 AAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhccc
Confidence 34567878887776654321 2345556666665433 459999999999999753 33222 2233334457799
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCChhh--HHHHHHHHHh---ccChhH
Q 004273 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNEVT--YTELLKLAVW---QKNLSA 211 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t--~~~ll~~~~~---~~~~~~ 211 (764)
.+.|.++-++..++-. -=...+.+++...|..|+++.|+++++.-+... +.++..- -..|+.+-.. .-|...
T Consensus 170 reaAr~yAe~Aa~~Ap--~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 170 REAARHYAERAAEKAP--QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred HHHHHHHHHHHHhhcc--CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 9999988887754422 123578889999999999999999998876653 3455442 2334443221 234445
Q ss_pred HHHHHHHHHccCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchh
Q 004273 212 VHEIWEDYIKHYSLS-IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 212 a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
|...-.+..|- .|| ...--.-..++.+.|+..++-++++.+-+....|+.
T Consensus 248 Ar~~A~~a~KL-~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i---------------------------- 298 (531)
T COG3898 248 ARDDALEANKL-APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI---------------------------- 298 (531)
T ss_pred HHHHHHHHhhc-CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH----------------------------
Confidence 55555554442 233 223334456788999999999999999885444443
Q ss_pred hhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHH
Q 004273 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL-GLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 368 (764)
.++..+.+.|+. +++-+++.... .++||. ...-.+..+....|++..|..--+.... ..|....|..
T Consensus 299 -------a~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lL 367 (531)
T COG3898 299 -------ALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLL 367 (531)
T ss_pred -------HHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHH
Confidence 233445555654 33333333221 134544 4556677788888998888776655544 4667788887
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHhhCC
Q 004273 369 LSVECSKA-LELDLAEALLDQISRCT 393 (764)
Q Consensus 369 li~~~~~~-g~~~~A~~~~~~~~~~~ 393 (764)
|.+.-.-. |+-.++...+.+....+
T Consensus 368 lAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 368 LADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHhhccCchHHHHHHHHHHhcCC
Confidence 77765544 99999999998887765
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.13 Score=42.76 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=51.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 004273 516 LHSLVEAQESHRAMEIFKQMKTCGIPPN--AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ----TMTYTALIKIL 589 (764)
Q Consensus 516 i~~~~~~~~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~----~~~~~~li~~~ 589 (764)
..++-..|+.++|+.+|++....|.... ...+..+-..+...|++++|..+++...... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3445566777777777777777665443 2344455556666777777777776666542 22 11112233355
Q ss_pred HhcCCHHHHHHHHHHHH
Q 004273 590 LDYGDFDEALNLLDLVS 606 (764)
Q Consensus 590 ~~~g~~~~A~~~~~~m~ 606 (764)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66677777777665544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.2 Score=45.27 Aligned_cols=198 Identities=15% Similarity=0.092 Sum_probs=110.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHH----ccCChhHHHHHHHHHHHCCCCC
Q 004273 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN-------IMIDCCS----IIRCFKSASALVSMMVRDGFYP 577 (764)
Q Consensus 509 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~-------~ll~~~~----~~~~~~~a~~~~~~~~~~g~~p 577 (764)
+.++..++....+.++..+|-..+.-+.-. .|+...-. .+-+..+ ...+...-+.+|+......+..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 347888888889999999998888776553 34332111 1111111 1123344456666666554321
Q ss_pred C-HHHH-HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCC-CHHHHHHH----HHHHH---HcCCHHHHHHHHHHHHHCCCC
Q 004273 578 Q-TMTY-TALIKILLDYGD-FDEALNLLDLVSLEGIPH-DVLLYNTI----LKKAC---EKGRIDVIEFIIEQMHQNKVQ 646 (764)
Q Consensus 578 ~-~~~~-~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p-~~~~~~~l----i~~~~---~~g~~~~a~~~~~~m~~~~~~ 646 (764)
- .++| .--..-+-+.|. -++|+++++.+.. +.| |...-|.+ =.+|. ....+.+-..+-+-..+.|+.
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 1 1111 222334556665 8899999999884 344 33333322 22332 223456667776777778887
Q ss_pred CC----HhhHHHHHH--HHHhcCChHHHHHHHHHHHHhhhccccCchHhhHHHHHHhhhhccHHHHHHHHHHhhh
Q 004273 647 PD----PSTCHFVFS--GYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCED 715 (764)
Q Consensus 647 p~----~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (764)
|- ...-+.|-. -+...|++.++.-+-..+.+ +.| +....+-.--.+....+-..+|..+..+..
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaP---S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAP---SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCC---cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 73 344555554 45678999998876665543 444 222222222233344455677888877665
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.011 Score=43.72 Aligned_cols=61 Identities=23% Similarity=0.353 Sum_probs=32.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 004273 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 654 (764)
+.|++++|+++|+++.... +-+...+..+...|.+.|++++|..+++++.. ..|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHH
Confidence 4556666666666655432 22445555566666666666666666666553 3455444433
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.18 Score=46.80 Aligned_cols=121 Identities=9% Similarity=-0.139 Sum_probs=51.9
Q ss_pred cCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHH-----HHHHHHHHccCCHH
Q 004273 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCY-----LLMMQALCKGGYLE 139 (764)
Q Consensus 65 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~~~ 139 (764)
.+.+.-.++++.++++.+.+.++.....|.+.-.+.||.+.|...|++..+..-..|.... -.....|.-++++.
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 3444445555555555443444444455555555555555555555544432211221111 12222334444555
Q ss_pred HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004273 140 EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 140 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+|...|+++...+. .|...-|.-.-+..-.|+...|++.++.|.+.
T Consensus 270 ~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 270 EAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55555555544332 12222222222222334555555555555543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.28 Score=52.81 Aligned_cols=136 Identities=7% Similarity=-0.124 Sum_probs=75.8
Q ss_pred CCCcchHHHHHHHhhC--C---CChhHHHHHHHHHHHcCccccHHHHHHHHHHHHcc--------CCHHHHHHHHHHHhh
Q 004273 84 SLGADDFFHILNYCAR--S---PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG--------GYLEEASNLIYFLGE 150 (764)
Q Consensus 84 ~~~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~ 150 (764)
+.+...|...+++... . ++...|+++|++..+.+ +-+...|..+..+|... .++..+.+..++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4566677777765432 2 23557888888888774 22334444433333221 112333333333222
Q ss_pred hcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHcc
Q 004273 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222 (764)
Q Consensus 151 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (764)
....+.+...|.++.-.+...|++++|...|++..... |+...|..+...+...|+.++|.+.+++...-
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11122233456666555556677777777777777653 56666777777777777777777777666553
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.018 Score=42.70 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccC-CHHHHHHHHHHHHH
Q 004273 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR-DLKSAYETLQHMVA 255 (764)
Q Consensus 193 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 255 (764)
..+|..+-..+...|++++|...|++.++..+.++..+..+..+|.+.| ++++|++.|++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455666666667777777777777777766667777777777888887 68888888887766
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.65 Score=40.88 Aligned_cols=134 Identities=12% Similarity=0.051 Sum_probs=104.5
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHH
Q 004273 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE---GIPHDVLL 616 (764)
Q Consensus 540 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~ 616 (764)
+.|+...-..|-.+....|+..+|...|++...--+.-|....-.+.++....+++..|...++.+.+. +-.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 467777777888899999999999999999888767778888888888999999999999999988753 23344 4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004273 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 617 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
.-.+.+.+...|..+.|+..|+...+ .-|+...-...-..+.+.|+..++..-+..+..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45577888899999999999999986 556665544445577888888887655555443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.22 E-value=2.6 Score=46.34 Aligned_cols=151 Identities=12% Similarity=0.034 Sum_probs=94.9
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH--HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN--KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
....-|....+...++.|+.+-. ..+.+++. .......+-+-+.|++++|...+-+-.. -+.|. .+|.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s-----~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPS-----EVIK 405 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChH-----HHHH
Confidence 34555555566666666665533 33332222 1223334445578999999887765542 22332 4666
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH
Q 004273 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
-|....++..-..+++.+.+.|+. +...-..||.+|.+.++.++..++.+...+|.. .+.....+..+-+.+-.+.|
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHHH
Confidence 777778888888889999988876 666667899999999999988888776654421 12234445555566666666
Q ss_pred HHHHHH
Q 004273 247 YETLQH 252 (764)
Q Consensus 247 ~~~~~~ 252 (764)
..+-..
T Consensus 483 ~~LA~k 488 (933)
T KOG2114|consen 483 ELLATK 488 (933)
T ss_pred HHHHHH
Confidence 555443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.6 Score=43.82 Aligned_cols=53 Identities=9% Similarity=-0.022 Sum_probs=32.5
Q ss_pred HHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
+.-.++.+.|.+.-..+.+-...+....-.-..++--.++.+.|...|++.+.
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ 231 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR 231 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc
Confidence 44567777777766666655444444433333344556777778777777766
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.06 Score=45.18 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH--------------hhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004273 122 NKCYLLMMQALCKGGYLEEASNLIYFL--------------GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~~--------------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
..++..++.++++.|+++....+++.. ....+..|+..+..+++.+|+.+|++..|+++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 345555666666666666666555433 223345566666666666666666666666666665543
Q ss_pred -CCCCChhhHHHHHHHH
Q 004273 188 -MVGKNEVTYTELLKLA 203 (764)
Q Consensus 188 -g~~p~~~t~~~ll~~~ 203 (764)
+++-+..+|..|++-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 5555566666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.015 Score=42.94 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=30.9
Q ss_pred hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
..|++++|.++++.+.+..|.+...+..+..+|.+.|++++|..+++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666666555555666666666666666666666666666655
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.17 Score=44.32 Aligned_cols=71 Identities=17% Similarity=-0.016 Sum_probs=51.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHh-----cCCCCChhhH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-----RMVGKNEVTY 196 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~ 196 (764)
+...++..+...|++++|..+.+.+...+ +-|...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 56677778888899999999999887665 34677899999999999999999999988754 3788877653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.6 Score=43.18 Aligned_cols=61 Identities=10% Similarity=-0.097 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhccChh---HHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 195 TYTELLKLAVWQKNLS---AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
++..+..++...+..+ +|..+++.+.+..+..+..+-.-+.++.+.++.+.+.+.+.+|..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 3444555555554443 344444444443443444444445555556666666677766665
|
It is also involved in sporulation []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.56 Score=49.33 Aligned_cols=259 Identities=13% Similarity=0.135 Sum_probs=135.4
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 004273 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAAC 405 (764)
Q Consensus 326 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~ 405 (764)
|....+.+=+-.+...|.+++|.++- -.|+ ...-|.-|.......=+++-|++.+.+....
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~ia----clgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl------------- 614 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIA----CLGV--TDTDWRELAMEALEALDFETARKAYIRVRDL------------- 614 (1081)
T ss_pred cccccccccchhhhhccchhhhhccc----ccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-------------
Confidence 44445555556666777777765431 1122 2222333333333334444454444444332
Q ss_pred hcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 004273 406 DTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484 (764)
Q Consensus 406 ~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (764)
.+-+.+.-+++|++ |-.|+....... |+-.|.+.++.++|..-+...++.+
T Consensus 615 ----~~L~li~EL~~~k~rge~P~~iLlA~~---~Ay~gKF~EAAklFk~~G~enRAlE--------------------- 666 (1081)
T KOG1538|consen 615 ----RYLELISELEERKKRGETPNDLLLADV---FAYQGKFHEAAKLFKRSGHENRALE--------------------- 666 (1081)
T ss_pred ----HHHHHHHHHHHHHhcCCCchHHHHHHH---HHhhhhHHHHHHHHHHcCchhhHHH---------------------
Confidence 34445556677777 777877655443 3444555566555544433333333
Q ss_pred HHHhccCcHHHHHHHHHhcCCC-------------CChhhHHHHHHHHHHcCChhHHHHHHHH------HHhCCCC---C
Q 004273 485 KALGAEGMIRELIQYFCDSKTP-------------LGTPTYNTVLHSLVEAQESHRAMEIFKQ------MKTCGIP---P 542 (764)
Q Consensus 485 ~~~~~~g~~~~a~~~~~~~~~~-------------~~~~~~~~li~~~~~~~~~~~A~~l~~~------m~~~g~~---p 542 (764)
+|.....++.|.+++.....+ .++.-=-+....+...|+..+|..+.-+ +.+-+-+ .
T Consensus 667 -myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ 745 (1081)
T KOG1538|consen 667 -MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKA 745 (1081)
T ss_pred -HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchh
Confidence 333333334443333221000 0111111334455556776666654321 1111112 2
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------
Q 004273 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL------- 615 (764)
Q Consensus 543 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------- 615 (764)
+..+...+...+-+...+..|-++|..|-.. ..+++.....+++++|..+-++.. .+.||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP--e~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP--EFKDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc--cccccccchHHHHh
Confidence 3344444444455566677788888777442 356777788889999988888765 3345532
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004273 616 ----LYNTILKKACEKGRIDVIEFIIEQMHQN 643 (764)
Q Consensus 616 ----~~~~li~~~~~~g~~~~a~~~~~~m~~~ 643 (764)
-|.-.-.+|.++|+-.+|..+++++...
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2344456778888888888888887653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.019 Score=41.92 Aligned_cols=52 Identities=10% Similarity=-0.153 Sum_probs=20.1
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHH
Q 004273 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
+.+.|++++|+..|+++.+.. +-+...+..+..++.+.|++++|...|+.+.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444443221 1122333344444444444444444444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.14 Score=50.63 Aligned_cols=287 Identities=9% Similarity=-0.087 Sum_probs=136.2
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcch----HHHHHHHhhCCCChhHHHHHHHHHH--Hc--Cc-cccHHHHHHHH
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADD----FFHILNYCARSPDPLFVMETWRMME--EK--EI-GLNNKCYLLMM 129 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~--~~--~~-~~~~~~~~~li 129 (764)
..-+++.|+.+..+.+|+...+.| .-|..+ |..|..+|.-.+|++.|++++..=+ .+ |- .-...+...|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 345677788888888888877766 233332 5555666666677777776654311 11 10 11223334455
Q ss_pred HHHHccCCHHHHHHHHHHHhh---hcCC-CCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 004273 130 QALCKGGYLEEASNLIYFLGE---RYGI-YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW 205 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~---~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (764)
+.+--.|.+++|...-.+-.. ..|- ......+-.|...|...|+.-.-.. -.+.|-.|+.++
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~---------- 168 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT---------- 168 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH----------
Confidence 555555666666554332211 0000 0011122223444433332210000 000111122111
Q ss_pred ccChhHHHHHHHHHHcc------CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCC
Q 004273 206 QKNLSAVHEIWEDYIKH------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (764)
..++.|.++|..-.+- -..--..|..|.+.|.-.|+++.|+...+.-.+......+
T Consensus 169 -~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD----------------- 230 (639)
T KOG1130|consen 169 -SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD----------------- 230 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh-----------------
Confidence 0112233333222210 1112235667777778888999998877664432211111
Q ss_pred CccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH----CCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 004273 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS----LGL-QPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354 (764)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~-~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 354 (764)
+-..+.++..+..++.-.|+++.|.+.|+.-.. .|- ........+|-+.|.-..++++|+.++..-
T Consensus 231 ---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 231 ---------RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred ---------HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 001124778888888889999999888876532 221 112233445556666666666666666543
Q ss_pred HHC-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 004273 355 QQN-----NLKPQDSTIATLSVECSKALELDLAEALLD 387 (764)
Q Consensus 355 ~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 387 (764)
... ...-....+-+|..+|...|..+.|+.+..
T Consensus 302 LaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 302 LAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 221 011122334444455555555555444433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.78 Score=42.79 Aligned_cols=180 Identities=11% Similarity=0.015 Sum_probs=92.7
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHcCc--cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004273 92 HILNYCARSPDPLFVMETWRMMEEKEI--GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
.....+...|++..|.+.|+.+..... +--....-.++.++-+.|+++.|...+++..+..+-.|.. .+...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHH
Confidence 344445567888888888888877521 1223445566777888888888888888877665444432 2333333333
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCC
Q 004273 170 KLHSMVHANLCLDLMDSRMVGKNE-------VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
......... ....|. .++..++.-|=.+.-..+|...+..+..... ..--.+...|.+.|.
T Consensus 89 ~~~~~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la---~~e~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 89 YYKQIPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA---EHELYIARFYYKRGK 156 (203)
T ss_dssp HHHHHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH---HHHHHHHHHHHCTT-
T ss_pred HHHhCccch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHccc
Confidence 221111110 001111 1233333333333334444443333322100 011224567889999
Q ss_pred HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHH
Q 004273 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313 (764)
Q Consensus 243 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 313 (764)
+..|..-++.+.+. -|+.... ..+.-.++.+|.+.|..+.+.
T Consensus 157 y~aA~~r~~~v~~~--yp~t~~~---------------------------~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 157 YKAAIIRFQYVIEN--YPDTPAA---------------------------EEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHH--STTSHHH---------------------------HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHH--CCCCchH---------------------------HHHHHHHHHHHHHhCChHHHH
Confidence 99999999999883 3333111 136667888888888877443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.043 Score=54.05 Aligned_cols=137 Identities=9% Similarity=-0.067 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHc-----c-CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccc
Q 004273 195 TYTELLKLAVWQKNLSAVHEIWEDYIK-----H-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS 268 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 268 (764)
.|..|-+.|.-.|+++.|....+.-.. + -.....++..|.++++-.|+++.|.+.|+......+.-..
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~------ 270 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN------ 270 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc------
Confidence 445555555667777777766655442 1 1223346777888888888888888888776543222211
Q ss_pred cccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----C-CCCCcccHHHHHHHHHhcCC
Q 004273 269 EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL----G-LQPSSHTYDGFIRAIVSDRG 343 (764)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~~~t~~~li~~~~~~~~ 343 (764)
+.+.+.+..+|...|.-...+++|+..+.+-... + ..-...++.+|-.++...|.
T Consensus 271 --------------------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 271 --------------------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred --------------------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 1111235556777777778888888887664321 1 12245678889999999999
Q ss_pred hhHHHHHHHHHHHC
Q 004273 344 LRNGMEVLKIMQQN 357 (764)
Q Consensus 344 ~~~a~~~~~~m~~~ 357 (764)
-+.|+.+...-.+.
T Consensus 331 h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 331 HRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998877766553
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.5 Score=43.87 Aligned_cols=263 Identities=9% Similarity=-0.076 Sum_probs=150.1
Q ss_pred HHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcch
Q 004273 10 FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD 89 (764)
Q Consensus 10 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 89 (764)
+......|-++.++.+|+ ..|...++..|+. ...|...+..++..+++++|.--.++-.+.. +-.+..
T Consensus 52 ~k~~gn~~yk~k~Y~nal----------~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~ 119 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNAL----------KNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKG 119 (486)
T ss_pred HHhhcchHHHHhhHHHHH----------HHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecC-CCcccc
Confidence 334455566777777777 6666677778887 4444455666777888888877766554332 111223
Q ss_pred HHHHHHHhhCCCChhHHHHHHHH---------------HHHcCc-cccHHHHHHHH-HHHHccCCHHHHHHHHHHHhhhc
Q 004273 90 FFHILNYCARSPDPLFVMETWRM---------------MEEKEI-GLNNKCYLLMM-QALCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~---------------~~~~~~-~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~ 152 (764)
+.-.-+++...++...|.+.++. ...... +|....|..+- ..+.-.|++++|...--.+.+.+
T Consensus 120 ~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 120 QLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD 199 (486)
T ss_pred ccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc
Confidence 33344444444444444433331 111111 12233443332 23456788888888766665432
Q ss_pred CCCCChhhhHHHHHHHh--ccCCHHHHHHHHHHHHhcCCCCChhhH---HHHHH----------HHHhccChhHHHHHHH
Q 004273 153 GIYPILPVYNSFLGACA--KLHSMVHANLCLDLMDSRMVGKNEVTY---TELLK----------LAVWQKNLSAVHEIWE 217 (764)
Q Consensus 153 ~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~----------~~~~~~~~~~a~~~~~ 217 (764)
.+..+...+++.+ -.++.+.|..-|++....+ |+-..- ....+ -..+.|++..|.+.|.
T Consensus 200 ----~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 200 ----ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred ----cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 1234555555543 3578888888888877753 443322 11222 2235777888888888
Q ss_pred HHHcc----CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhH
Q 004273 218 DYIKH----YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293 (764)
Q Consensus 218 ~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (764)
+.+.. ..++...|.....+..+.|+.++|+.--+...+ +.+.- .
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~sy------------------------------i 321 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSY------------------------------I 321 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHH------------------------------H
Confidence 88763 556666777777778888888888777776665 22221 0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 294 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
..|.--..++...++|+.|.+-|+...+.
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12222334445567777887777776654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.15 Score=49.42 Aligned_cols=101 Identities=9% Similarity=-0.005 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CChhhH
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG--KNEVTY 196 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~ 196 (764)
..|...+..+.+.|++++|...|+.+.+.+ |+. ..+-.+...|...|++++|...|+.+...-+. .....+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 355555555566678888888888776653 332 35566777777788888888888877754211 112233
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHccCCCC
Q 004273 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLS 226 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 226 (764)
-.+...+...|+.+.|..+|+.+.+.+|.+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 333444556677777777777666554433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.045 Score=40.52 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 004273 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG-RIDVIEFIIEQMH 641 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 641 (764)
..|..+...+...|++++|+..|++..+.. +.+...|..+..+|...| ++++|++.+++.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444455555555555555555554331 123334444444555555 3555555555444
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.78 E-value=2.6 Score=42.73 Aligned_cols=148 Identities=14% Similarity=0.239 Sum_probs=110.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHH-HHH
Q 004273 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY-TAL 585 (764)
Q Consensus 508 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~-~~l 585 (764)
-+..|...|+...+....+.|..+|-+..+.| +.++...++++|..++ .|+...|..+|+.=... -||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 35578888998888888999999999999998 6788889999998776 47888899999765443 2444333 566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 004273 586 IKILLDYGDFDEALNLLDLVSLEGIPHD--VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661 (764)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 661 (764)
+.-+.+.++-+.|..+|+..... +..+ ..+|..+|.--..-|+...+..+-++|.+ +.|...+-....+-|.-
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 77778889999999999955431 1222 45899999888889999988888888875 55666555555554433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.14 Score=49.48 Aligned_cols=99 Identities=11% Similarity=-0.040 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHccCCCC---HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccccc
Q 004273 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS---IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 271 (764)
.|...+....+.|++++|...|+.+.+..|.+ +.++..+..+|...|+++.|...|+.+.+. .|+.+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~------ 216 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKA------ 216 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcch------
Confidence 34444444444566666666666666654444 245556666666777777777777776652 2222111
Q ss_pred ccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
...+-.+...+...|+.+.|..+|++..+.
T Consensus 217 ---------------------~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 217 ---------------------ADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred ---------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 024444455566667777777777666654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.089 Score=44.17 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=46.6
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004273 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 118 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
..|+..+..+++.+|+..|++..|.++.+...+.++++.+..+|..|+.-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999888889999887543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.042 Score=41.24 Aligned_cols=52 Identities=17% Similarity=0.015 Sum_probs=25.1
Q ss_pred hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004273 97 CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 149 (764)
+.+.++++.|.++++.+.+.+ +.++..+......+.+.|++++|.+.|+...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344445555555555555443 2344444444445555555555555555444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.94 Score=45.78 Aligned_cols=76 Identities=9% Similarity=-0.065 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhccC---CCCcchHHHHHHHhhC---CCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004273 57 MQIVDALCRGERSRASHLLLNLGHAHH---SLGADDFFHILNYCAR---SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 57 ~~i~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 130 (764)
.++.+|....+|+..+++++.+..... .-.+..-....-++.+ .|+.+.|++++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 445556666666666666666654311 0011111112222233 4666666666666444444555556655555
Q ss_pred HH
Q 004273 131 AL 132 (764)
Q Consensus 131 ~~ 132 (764)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.87 Score=43.80 Aligned_cols=33 Identities=6% Similarity=-0.045 Sum_probs=16.7
Q ss_pred CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 223 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.|.|...|-.|..+|...|+.+.|...|....+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444445555555555555555555555555444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.097 Score=45.92 Aligned_cols=69 Identities=28% Similarity=0.434 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHhh
Q 004273 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ-----NKVQPDPST 651 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 651 (764)
...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+...|.+.|+++.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4445555666666666666666666432 33555666666666666666666666665542 366666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.88 Score=43.76 Aligned_cols=101 Identities=14% Similarity=0.040 Sum_probs=81.4
Q ss_pred CCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---ccChhHHHHHHHHHHccCCCCHHhHH
Q 004273 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW---QKNLSAVHEIWEDYIKHYSLSIFSLR 231 (764)
Q Consensus 155 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (764)
+-|...|-.|...|.+.|+...|...|....+.. .++...+..+-.++.. ..+-.++.++++++.+..+.|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4467789999999999999999999999988752 2344444444444433 33456889999999999999999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHh
Q 004273 232 KFVWSFTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 232 ~li~~~~~~g~~~~A~~~~~~m~~~ 256 (764)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 9999999999999999999999983
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.13 Score=48.11 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=71.9
Q ss_pred CCChhhHHHHHHHHHHc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh----------------hHHH
Q 004273 506 PLGTPTYNTVLHSLVEA-----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF----------------KSAS 564 (764)
Q Consensus 506 ~~~~~~~~~li~~~~~~-----~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~----------------~~a~ 564 (764)
..|-.+|-+++..+... +..+-....++.|.+-|+.-|..+|+.||+.+-+..-. .-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45666777777777654 45566667788899999999999999999987665432 2378
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004273 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595 (764)
Q Consensus 565 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 595 (764)
.++++|..+|+.||..+-..|+.++++.+..
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 9999999999999999999999999888753
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.28 E-value=3.5 Score=41.85 Aligned_cols=170 Identities=9% Similarity=-0.085 Sum_probs=94.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcC--CCCChhhhHHHHHHHhc---cCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYG--IYPILPVYNSFLGACAK---LHSMVHANLCLDLMDSRMVGKNEVTYTE 198 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 198 (764)
+.-.++-+|-...+++..+++.+.+..-.. +.-+..+--...-++.+ .|+.++|+.++..+....-.++..||..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 333555578889999999999998853211 11111122233445566 7999999999999766666778888887
Q ss_pred HHHHHHh---------ccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHH----HHHHH---H-HHHHhhhccc
Q 004273 199 LLKLAVW---------QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS----AYETL---Q-HMVALAMMGK 261 (764)
Q Consensus 199 ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~---~-~m~~~~~~~~ 261 (764)
+...|.. ...+++|...|.+.-.- .||...--.+...+.-.|.... ..++- . .+.+.|....
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~-~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI-EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC-CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 7776542 11245666655544432 2444433333333333332211 11221 1 1111111111
Q ss_pred chhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 262 LYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
. ..-|.+.+++.+..-.|++++|.+..++|...
T Consensus 302 ~----------------------------~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 M----------------------------QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred c----------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1 01266677777777777777777777777754
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.085 Score=39.54 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=40.1
Q ss_pred HHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
..|.+.++++.|.++++.+.+-.|.++..+.....++.+.|+++.|.+.|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456666777777777777766666777777777777788888888888888776
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.41 Score=49.06 Aligned_cols=63 Identities=16% Similarity=-0.001 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHHh
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|.+.|+.++|+..|+...+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445556666666666666666666655433 2332 2355566666666666666666666555
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.84 E-value=1.9 Score=35.70 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=79.1
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004273 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|..++..++..+..... +..-||-+|--....-+-+-..+.++.+..-+.+.|- .-...++..|++.|.
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~------ 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK------ 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-------
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc------
Confidence 467777777777776642 3333443433333334445556666666433222110 012233444443332
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhc
Q 004273 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 259 (764)
+..-....+.....+|.-++-.+++..+.+...+++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33344556777788888899999999988888899999999999999999999999999999988765
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.6 Score=40.50 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=30.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCCcccHHHHHHHHHhcCChhHHHHH
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLG---LQPSSHTYDGFIRAIVSDRGLRNGMEV 350 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~t~~~li~~~~~~~~~~~a~~~ 350 (764)
.|-..|-.+.-..++..|...++.--+.+ -.-|..+...|+.+| ..|+.+++..+
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 34455666666677777777777644322 122344555566555 34555554444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.70 E-value=3.8 Score=40.58 Aligned_cols=148 Identities=11% Similarity=0.117 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--cC----ChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC-
Q 004273 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI--IR----CFKSASALVSMMVRDGF---YPQTMTYTALIKILLDYGD- 594 (764)
Q Consensus 525 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~p~~~~~~~li~~~~~~g~- 594 (764)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|++... .++-..+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667889999999999888887764443333 22 34579999999998632 3455666666544 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH-
Q 004273 595 ---FDEALNLLDLVSLEGIPHDVL--LYNTILKKACEKGR--IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN- 666 (764)
Q Consensus 595 ---~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~- 666 (764)
.+.+..+|+.+...|+..+.. ....++..+..... ..++.++++.+.+.|+++.... ...++.++-.++.+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~-yp~lGlLall~~~~~ 234 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH-YPTLGLLALLEDPEE 234 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc-ccHHHHHHhcCCchH
Confidence 466778888888888877433 33333333322222 4578999999999999888776 45566555544444
Q ss_pred HHHHHHHHH
Q 004273 667 SAMEALQVL 675 (764)
Q Consensus 667 ~a~~~~~~~ 675 (764)
+..+.+.++
T Consensus 235 ~~~~~i~ev 243 (297)
T PF13170_consen 235 KIVEEIKEV 243 (297)
T ss_pred HHHHHHHHH
Confidence 444444433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.67 E-value=3.8 Score=38.67 Aligned_cols=173 Identities=12% Similarity=0.073 Sum_probs=84.5
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCc---chHHHHHHHhhCCCChhHHHHHHHHHHHcCc-cccHHHHHHHHHHHH
Q 004273 58 QIVDALCRGERSRASHLLLNLGHAHHSLGA---DDFFHILNYCARSPDPLFVMETWRMMEEKEI-GLNNKCYLLMMQALC 133 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~ 133 (764)
.+..-.+.|+|++|.+.|+.+.... +.++ .+...++.++-+.++++.|+...++..+... .||. .|-.-|.+++
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs 117 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLS 117 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHH
Confidence 3445666777777777777776543 2222 3344455555577777777777777776532 2332 3333333333
Q ss_pred cc-------CCHH---HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhh-H-HHHHH
Q 004273 134 KG-------GYLE---EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVT-Y-TELLK 201 (764)
Q Consensus 134 ~~-------g~~~---~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~-~~ll~ 201 (764)
.- .+.. .|..-|+.+.++. ||. .-...|..-...+.. ... + ..+.+
T Consensus 118 ~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~d------~LA~~Em~Iar 175 (254)
T COG4105 118 YFFQIDDVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLND------ALAGHEMAIAR 175 (254)
T ss_pred HhccCCccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHHH------HHHHHHHHHHH
Confidence 21 1222 2222333333221 221 111111111111110 000 0 23445
Q ss_pred HHHhccChhHHHHHHHHHHccCCCCHH---hHHHHHHHhhccCCHHHHHHHHHHHH
Q 004273 202 LAVWQKNLSAVHEIWEDYIKHYSLSIF---SLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
.|.+.|.+..|..-++.+++..+.... .+-.+..+|...|-.++|.+.-.-+.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 566777777777777777765433333 34445556777777777766544443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.67 E-value=1.4 Score=47.07 Aligned_cols=92 Identities=14% Similarity=0.020 Sum_probs=45.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcC-CCCChh------hHHHHHHHHHh----ccChhHHHHHHHHHHccCCCCHHhH
Q 004273 162 NSFLGACAKLHSMVHANLCLDLMDSRM-VGKNEV------TYTELLKLAVW----QKNLSAVHEIWEDYIKHYSLSIFSL 230 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~------t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 230 (764)
..++....-.||-+.+++.+.+..+.+ +. .+. +|..++..+.. ..+.+.+.+++..+.+.+|.+....
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 344455555566666666666544421 11 111 23333332222 2344555666666655555555554
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHH
Q 004273 231 RKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 231 ~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
-.-.+.+...|+++.|++.|+...
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhc
Confidence 455555555666666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.22 Score=37.91 Aligned_cols=68 Identities=7% Similarity=0.045 Sum_probs=50.3
Q ss_pred HhHHHHHHHhhccCCHHHHHHHHHHHHHhhh-cccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHcc
Q 004273 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAM-MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT 306 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 306 (764)
.+++.+..+|...|++++|+..|++..+..- .++. ......+++.+...+...
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------------------------~~~~a~~~~~lg~~~~~~ 59 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--------------------------HPDTANTLNNLGECYYRL 59 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--------------------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHHHHHc
Confidence 4677888889999999999999999886411 1111 111136899999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 004273 307 QNSGLAEQLMLQMQS 321 (764)
Q Consensus 307 g~~~~a~~~~~~m~~ 321 (764)
|++++|++.+++..+
T Consensus 60 g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 60 GDYEEALEYYQKALD 74 (78)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988653
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.51 E-value=4.4 Score=38.29 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=33.1
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCc--cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKEI--GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI 157 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 157 (764)
|+..+.- .+.|+++.|.+.|+.+..+.. +-...+.-.++.++-+.++++.|+..+++.....+-.||
T Consensus 38 Y~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 38 YNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 4443333 244566666666666655421 112233334444555566666666666655555544444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.42 E-value=6 Score=39.51 Aligned_cols=313 Identities=10% Similarity=0.022 Sum_probs=191.0
Q ss_pred CCcchHHHHHHHhhhccCCCCcchHHHHHHHhh--CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH--HccCCHHHH
Q 004273 66 GERSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL--CKGGYLEEA 141 (764)
Q Consensus 66 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A 141 (764)
..+-.+.+.|+.-+... -|.+|-..+. ..||-..|++.-.+..+. +..|....-.|+.+- .-.|+++.|
T Consensus 67 ~sP~t~~Ryfr~rKRdr------gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~A 139 (531)
T COG3898 67 ESPYTARRYFRERKRDR------GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDA 139 (531)
T ss_pred hCcHHHHHHHHHHHhhh------HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHH
Confidence 34555666666654321 3555544444 457888887776655432 334554444555433 356999999
Q ss_pred HHHHHHHhhhcCCCCChh--hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHH
Q 004273 142 SNLIYFLGERYGIYPILP--VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (764)
.+-|+.|... |..- -...|.-.--+.|+.+.|...-+..-..-.. =...+...+...+..|+++.|+++.+.-
T Consensus 140 r~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 140 RKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 9999999741 3322 2233333445679999998888877665322 3457788899999999999999999988
Q ss_pred Hcc--CCCCHHh--HHHHHHHhh---ccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhh
Q 004273 220 IKH--YSLSIFS--LRKFVWSFT---RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 220 ~~~--~~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
... +.++..- -..|+.+-. -.-+...|...-.+..+ +.|+...
T Consensus 215 ~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvP---------------------------- 264 (531)
T COG3898 215 RAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVP---------------------------- 264 (531)
T ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccch----------------------------
Confidence 753 5555442 223333221 12355666666555555 6666411
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCch-hHHHHHH
Q 004273 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN-NLKPQD-STIATLS 370 (764)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~-~~~~~li 370 (764)
.--.-.+.+.+.|+..++-.+++.+-+....|+.. ..|.....-+.++.-++...+. .++||. ...-.+.
T Consensus 265 --aav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va 336 (531)
T COG3898 265 --AAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVA 336 (531)
T ss_pred --HHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 22234577899999999999999999876555543 2233333333444444444331 234443 3445677
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCC-CCcchHHHHHHH-hcCCCHHHHHHHHHHHhh-ccCCC
Q 004273 371 VECSKALELDLAEALLDQISRCT-NPKPFSAFLAAC-DTMDKPERAIKIFAKMRQ-KLRPD 428 (764)
Q Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~li~~~-~~~g~~~~a~~l~~~m~~-~~~p~ 428 (764)
.+-...|++..|..--+...... ....|-.|.+.- ...|+-.++...+.+-.+ .-.|+
T Consensus 337 ~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 337 EAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 77888899988877666655442 333444444443 445899999998888776 44443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.14 E-value=2.5 Score=45.17 Aligned_cols=164 Identities=17% Similarity=0.119 Sum_probs=112.7
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHcC-cccc-----HHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhcCCCCCh
Q 004273 89 DFFHILNYCARSPDPLFVMETWRMMEEKE-IGLN-----NKCYLLMMQALCK----GGYLEEASNLIYFLGERYGIYPIL 158 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 158 (764)
.+..++...+-.||-+.+++.+....+.+ +... .-.|...+..++. ..+.+.|.++++.+.++ .|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 35566777777789899998888876643 2211 1234444444443 45788999999999766 4776
Q ss_pred hhhHHHH-HHHhccCCHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHH
Q 004273 159 PVYNSFL-GACAKLHSMVHANLCLDLMDSRM---VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 159 ~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
..|...- +.+...|++++|++.|+...... .+.....+-.+.-.+....++++|.+.|..+.+....+...|.-+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 6665443 34566799999999999765321 1122334444555678899999999999999987666766666665
Q ss_pred HH-hhccCCH-------HHHHHHHHHHHH
Q 004273 235 WS-FTRLRDL-------KSAYETLQHMVA 255 (764)
Q Consensus 235 ~~-~~~~g~~-------~~A~~~~~~m~~ 255 (764)
.+ +...|+. ++|.++|.+++.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 54 4466777 888899988875
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.048 Score=41.58 Aligned_cols=73 Identities=8% Similarity=-0.032 Sum_probs=48.5
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhh
Q 004273 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGH 80 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~ 80 (764)
|.....+..+...|...|++++|+ ..+++.. .. ....+-........+..+...+...|++++|++.+++..+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~-~~~~~al--~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEAL-DYYEKAL--DI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHH-HHHHHHH--HH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHH--HH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566778899999999999999999 6666552 11 1222222222355566667777778888888888877543
|
... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.94 E-value=2.4 Score=40.78 Aligned_cols=121 Identities=9% Similarity=-0.082 Sum_probs=53.8
Q ss_pred HHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHH
Q 004273 61 DALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEE 140 (764)
Q Consensus 61 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 140 (764)
.....|+..+|..+|....... +-+...-..+..++...|+++.|..++..+....-.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3445566666666666655543 222334445555566666666666666655433211111111122233333333332
Q ss_pred HHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHH
Q 004273 141 ASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 141 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
...+-.+... + +-|...--.+...+...|+.+.|++.+-.+.
T Consensus 222 ~~~l~~~~aa-d--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAA-D--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHh-C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222222211 1 1133444445555555666666655544443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.85 E-value=3.6 Score=37.42 Aligned_cols=159 Identities=13% Similarity=0.029 Sum_probs=94.8
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
+..||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-| ++--.|+++-|.+-|...-+.++-.|=...|--++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4568888888888899999999999998876332333333333 344568899888877777665544444444443332
Q ss_pred HHhccCCHHHHHHHHHH-HHhcCCCCChhhHHHHH-HHHHhccChhHHHHHHHHHHccCCC-------CHHhHHHHHHHh
Q 004273 167 ACAKLHSMVHANLCLDL-MDSRMVGKNEVTYTELL-KLAVWQKNLSAVHEIWEDYIKHYSL-------SIFSLRKFVWSF 237 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~li~~~ 237 (764)
+.-++.+|..-+.+ ... .|..-|...| ..|. |.+ ..+.+++.+...... =..+|--|..-+
T Consensus 178 ---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL--gki-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL--GKI-SEETLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH--hhc-cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 23455666544433 222 2333333322 2222 111 112333344332221 234778888899
Q ss_pred hccCCHHHHHHHHHHHHHh
Q 004273 238 TRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 238 ~~~g~~~~A~~~~~~m~~~ 256 (764)
...|+.++|..+|+.....
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 9999999999999988763
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.63 Score=39.56 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=58.5
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCC---cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHH
Q 004273 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLG---ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKC 124 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 124 (764)
|+.+...+-.......+.|++++|++.|+.+...- +.+ ......++.++.+.++++.|...+++.++.+-.....-
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 44445555555777888899999999999988764 222 23466777888888999999999999888753222234
Q ss_pred HHHHHHHHHc
Q 004273 125 YLLMMQALCK 134 (764)
Q Consensus 125 ~~~li~~~~~ 134 (764)
|-..+.+++.
T Consensus 85 Ya~Y~~gL~~ 94 (142)
T PF13512_consen 85 YAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHHH
Confidence 5455555543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.83 E-value=4 Score=39.77 Aligned_cols=150 Identities=10% Similarity=0.005 Sum_probs=84.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHH
Q 004273 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT----ALIKILLDYGDFDE 597 (764)
Q Consensus 522 ~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~----~li~~~~~~g~~~~ 597 (764)
.|+..+|-..++++.+. .+.|...+...=++|.-.|+.+.-...++++... ..||...|. .+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 46666777777776664 4556666666666777777777766667666643 123332222 22233456777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 004273 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN---KVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 674 (764)
|++.-++..+.+ +-|.-.-.++...+--.|+.+++.++..+-.+. +--.-...|....-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777777765432 234444455555566667777776664433221 1111122333444455666777777777764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.44 Score=41.49 Aligned_cols=92 Identities=9% Similarity=-0.029 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004273 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 57 ~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 136 (764)
.....+-..|++++|..+|+-+.-.+ +.++.-+..|..+|-..++++.|++.|......+. -|+..+-.....|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 33455556677777777777666544 12222223333334445667777777766555442 34444445555666667
Q ss_pred CHHHHHHHHHHHhh
Q 004273 137 YLEEASNLIYFLGE 150 (764)
Q Consensus 137 ~~~~A~~~~~~~~~ 150 (764)
+.+.|+..|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 77777777666643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.7 Score=38.04 Aligned_cols=86 Identities=10% Similarity=-0.010 Sum_probs=44.9
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhH
Q 004273 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
+-..|++++|..+|..+.--+.. |..-|..|..++-..+++++|+..|...-..+. -|...+-.+-.++...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 34566677776666666433322 222345555555556666666666665544332 133333344445555555555
Q ss_pred HHHHHHHHH
Q 004273 212 VHEIWEDYI 220 (764)
Q Consensus 212 a~~~~~~~~ 220 (764)
|...|....
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 555555444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.56 Score=44.16 Aligned_cols=89 Identities=9% Similarity=0.069 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHcc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------------HHHHH
Q 004273 541 PPNAATYNIMIDCCSII-----RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD----------------FDEAL 599 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~----------------~~~A~ 599 (764)
+-|..+|...+..+... +.++-....++.|.+.|+.-|..+|+.|+..+=+..- -+=++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45667777777766533 5667777778899999999999999999988755321 23467
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004273 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGR 629 (764)
Q Consensus 600 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 629 (764)
+++++|...|+.||..+-..|++++.+.+.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 788888888888888888888888876654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.58 E-value=8.4 Score=38.17 Aligned_cols=130 Identities=12% Similarity=0.099 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--ccC----hhHHHHHHHHHHcc----CCCCHHhHHHHHHHhhccCC-
Q 004273 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVW--QKN----LSAVHEIWEDYIKH----YSLSIFSLRKFVWSFTRLRD- 242 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~----~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~- 242 (764)
+++.+.+++.|.+.|+.-+..+|-+..-.... ..+ ...+..+|+.|.+. -.++...+..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777777666553332222 222 34677788888764 34556666666554 2222
Q ss_pred ---HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHcc-CC--HHHHHHHH
Q 004273 243 ---LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT-QN--SGLAEQLM 316 (764)
Q Consensus 243 ---~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~--~~~a~~~~ 316 (764)
.+.+..+|+.+.+.|+...... -+.+-+-++... .. ..++.+++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~L------------------------------Q~LS~iLaL~~~~~~~~v~r~~~l~ 205 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDL------------------------------QFLSHILALSEGDDQEKVARVIELY 205 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHH------------------------------HHHHHHHHhccccchHHHHHHHHHH
Confidence 3556677777777666655421 111222222221 11 34677888
Q ss_pred HHHHHCCCCCCcccHHHHH
Q 004273 317 LQMQSLGLQPSSHTYDGFI 335 (764)
Q Consensus 317 ~~m~~~g~~p~~~t~~~li 335 (764)
+.+.+.|+++....|..+.
T Consensus 206 ~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 206 NALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHcCCccccccccHHH
Confidence 8888888877777765543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.56 E-value=4.1 Score=35.19 Aligned_cols=44 Identities=14% Similarity=-0.010 Sum_probs=23.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc
Q 004273 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 171 (764)
..++..+...+.......+++.+...+ ..+....|.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHH
Confidence 345555555556666666666554432 23444556666666544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.54 E-value=2 Score=36.55 Aligned_cols=70 Identities=13% Similarity=0.039 Sum_probs=33.6
Q ss_pred CCCChhHHHHHHHHHHHcCc--cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004273 99 RSPDPLFVMETWRMMEEKEI--GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
+.|+++.|.+.|+.+..+-- +-...+.-.|+.+|.+.|++++|...+++..+.++..|+ +-|-..+.+++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~ 93 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLS 93 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHH
Confidence 44555555555555555420 112233344555555555555555555555544443343 23444444443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=2.3 Score=43.86 Aligned_cols=27 Identities=4% Similarity=-0.299 Sum_probs=12.1
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHh
Q 004273 160 VYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
.++.+..+|.+.|++++|+..|+...+
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALe 103 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALE 103 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444444444444444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.34 E-value=2.2 Score=35.18 Aligned_cols=97 Identities=8% Similarity=-0.074 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHH---HHHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK---CYLLMM 129 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li 129 (764)
..+.....+++..|+++.|++.|.+....- +-.++.||.-.+++.-.|+.+.|++=+++..+...+.+.. .|..-.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 334444567888999999999999987654 5667889999999999999999999999988864333333 333445
Q ss_pred HHHHccCCHHHHHHHHHHHhh
Q 004273 130 QALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~ 150 (764)
..|-..|+-+.|..-|+...+
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHH
Confidence 567788999999998887754
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.34 E-value=10 Score=39.45 Aligned_cols=175 Identities=9% Similarity=0.022 Sum_probs=123.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004273 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 134 (764)
+..++..+..+..+.-+..+...|..-| -+...|..++++|..+ ..+.-..+|+++.+..+. |+..-..|..-|-
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE- 143 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE- 143 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH-
Confidence 3345556667777788888888888766 6677899999999988 456778999999988652 3333334454444
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCC------hhhhHHHHHHHhccCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcc
Q 004273 135 GGYLEEASNLIYFLGERYGIYPI------LPVYNSFLGACAKLHSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~ 207 (764)
.++-..+..+|..+..+. -|. ...|.-|+..- ..+.+..+.+...+... |...-.+.+.-+-.-|....
T Consensus 144 kik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 144 KIKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HhchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 488888888888875432 221 12455554321 35677777777777643 55566677777878889999
Q ss_pred ChhHHHHHHHHHHccCCCCHHhHHHHHHHhh
Q 004273 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
++.+|.+++..+.++...|..+.-.++.-+-
T Consensus 220 N~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 220 NWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred CHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 9999999999999988888888777776543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.18 E-value=5.1 Score=34.58 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 004273 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557 (764)
Q Consensus 513 ~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 557 (764)
..+|..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 344445555555555555555555554 23444555555555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.05 E-value=4.9 Score=42.36 Aligned_cols=105 Identities=13% Similarity=0.039 Sum_probs=52.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
..+.++.-+.+.|..+.|+++-..-. .-.....+.|+++.|.++.++ .++...|..|-...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 35555655666666666655533211 112233445666666555322 22455666666666
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
...|+++-|++.|.+.. .+..|+-.|.-.|+.+.-.++.+...+
T Consensus 358 L~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666665542 344555566666666655555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.64 Score=46.50 Aligned_cols=95 Identities=12% Similarity=-0.070 Sum_probs=51.7
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHH
Q 004273 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 168 (764)
.++.+.-++.+.+++..|++..++.++.+ ++|+-..-.-..+|...|+++.|+..|+.+.+.. +.|..+-+-|+..-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 34455555666666666666666666664 4555555556666666666666666666665432 22333334444433
Q ss_pred hccCCH-HHHHHHHHHHHh
Q 004273 169 AKLHSM-VHANLCLDLMDS 186 (764)
Q Consensus 169 ~~~g~~-~~A~~~~~~m~~ 186 (764)
-+.... +...++|..|-.
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 333333 233555666544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.97 E-value=18 Score=40.22 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=43.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004273 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE----FIIEQMHQNKVQPDPSTCHFVFSGYV 660 (764)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~----~~~~~m~~~~~~p~~~~~~~ll~~~~ 660 (764)
++..+....+.+++..+.+..- +-++..|..++..+++.+..+.-. ++++........|-.. ++..++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g----~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~----VL~~La 782 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG----KEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLH----VLQILA 782 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC----ccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHH----HHHHHh
Confidence 4555666677777777776653 337788888888888888655443 4444444434444333 455555
Q ss_pred hcCC
Q 004273 661 NCGF 664 (764)
Q Consensus 661 ~~g~ 664 (764)
+.+.
T Consensus 783 kn~~ 786 (933)
T KOG2114|consen 783 KNGT 786 (933)
T ss_pred cCCc
Confidence 5543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.85 E-value=23 Score=41.13 Aligned_cols=128 Identities=15% Similarity=0.190 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhc----CCCCchhhchhh
Q 004273 377 LELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFG----NVNAPYEEGNMF 452 (764)
Q Consensus 377 g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~----~~~~~~~~~~~~ 452 (764)
++++.|+.-+.++ +...|.-.+.---+.|-+.+|+.++ +|+...+.-+..+|+ ....+++|.-++
T Consensus 894 ~ry~~AL~hLs~~----~~~~~~e~~n~I~kh~Ly~~aL~ly-------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSEC----GETYFPECKNYIKKHGLYDEALALY-------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHc----CccccHHHHHHHHhcccchhhhhee-------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 4556665555554 3334555566666677777777764 577777666655443 222333333222
Q ss_pred hhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhh--HHHHHHHHHHcCChhHHHH
Q 004273 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT--YNTVLHSLVEAQESHRAME 530 (764)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~ 530 (764)
+..+..++ -+.+|..+|++.+|+.+-.++....+... --.|+.-+...+++-+|-+
T Consensus 963 e~~Gklek----------------------Al~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~ 1020 (1265)
T KOG1920|consen 963 ERCGKLEK----------------------ALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAK 1020 (1265)
T ss_pred HHhccHHH----------------------HHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHH
Confidence 22222221 23345555555555555554433333322 2445555666666666666
Q ss_pred HHHHHHh
Q 004273 531 IFKQMKT 537 (764)
Q Consensus 531 l~~~m~~ 537 (764)
+..+...
T Consensus 1021 il~e~~s 1027 (1265)
T KOG1920|consen 1021 ILLEYLS 1027 (1265)
T ss_pred HHHHHhc
Confidence 6555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.76 E-value=5.2 Score=39.48 Aligned_cols=133 Identities=12% Similarity=0.005 Sum_probs=72.3
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCC
Q 004273 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 308 (764)
...++..++...+.++.+++.|+...+..-..+++.-.. ..+-.|-..|.+..+
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl--------------------------qvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL--------------------------QVCVSLGSLFAQLKD 177 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee--------------------------ehhhhHHHHHHHHHh
Confidence 344466677777788888888888776433332211100 366677777888888
Q ss_pred HHHHHHHHHHHHH----CCCCCCcc-cHHH-----HHHHHHhcCChhHHHHHHHHHHHCCC-CCchhHH----HHHHHHH
Q 004273 309 SGLAEQLMLQMQS----LGLQPSSH-TYDG-----FIRAIVSDRGLRNGMEVLKIMQQNNL-KPQDSTI----ATLSVEC 373 (764)
Q Consensus 309 ~~~a~~~~~~m~~----~g~~p~~~-t~~~-----li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~----~~li~~~ 373 (764)
+++|.-+.....+ .++. |.. -|.. +--++...|.+..|.+.-++..+..+ .-|..++ ..+.+.|
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 8877766555432 1211 211 1222 22345566777777777666554321 1133333 2455556
Q ss_pred HhcCCHHHHHHHHHH
Q 004273 374 SKALELDLAEALLDQ 388 (764)
Q Consensus 374 ~~~g~~~~A~~~~~~ 388 (764)
-..|+.+.|+.-+++
T Consensus 257 R~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQ 271 (518)
T ss_pred HhcccHhHHHHHHHH
Confidence 666666665555444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.71 E-value=1.9 Score=41.05 Aligned_cols=107 Identities=15% Similarity=0.037 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC---CCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC-hhhH
Q 004273 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYG---IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KN-EVTY 196 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~t~ 196 (764)
...|+.-+. +.+.|++.+|...|....++++ ..|| .+-.|..++...|++++|..+|..+.+.-++ |. +.++
T Consensus 142 ~~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 347777665 4466778888888887765432 2222 4556788888888888888888887765211 11 1344
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHH
Q 004273 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (764)
--|.......|+-+.|..+|+++.+.+|-...+-.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 44555566788888888888888887666655433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.60 E-value=2.3 Score=44.80 Aligned_cols=156 Identities=17% Similarity=0.020 Sum_probs=99.7
Q ss_pred HHHccCCHHHHHHHHH--HHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccC
Q 004273 131 ALCKGGYLEEASNLIY--FLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN 208 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (764)
...-.|+++++.++.. ++.. .++ ..-.+.++.-+-+.|..+.|+.+-.+ .. .=.....+.|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~--~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP--NIP--KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG--G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhhhcc--cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCC
Confidence 3445688888766664 2211 122 33588899999999999999997443 22 22344567888
Q ss_pred hhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccc
Q 004273 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
++.|.++... ..+...|..|.....+.|+++-|.+.|.+..
T Consensus 334 L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------------------------------- 374 (443)
T PF04053_consen 334 LDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------------------------------- 374 (443)
T ss_dssp HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------------------------------
T ss_pred HHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----------------------------------
Confidence 8888877654 3467789999999999999999988888764
Q ss_pred hhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 004273 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 353 (764)
-|..|+-.|.-.|+.+...++.+.....| -++..+.++.-.|+.++..+++..
T Consensus 375 ------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 375 ------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46677777888888877777776666554 256666666677777777666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.50 E-value=7.2 Score=34.52 Aligned_cols=137 Identities=14% Similarity=0.122 Sum_probs=78.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHH
Q 004273 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR--IDVIEFIIEQMH 641 (764)
Q Consensus 564 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~ 641 (764)
.++++.+.+.+++|+...|..+++.+.+.|++..-..++. .++-+|.......+-.+..... ...|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3455566667888888888888888888887666555544 3556666555544433322211 233344444332
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhHHHHHHhhhhccHHHHHHHHHHhhhcchh
Q 004273 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNEN 719 (764)
Q Consensus 642 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 719 (764)
..+..++..+...|++-+|+++.+.... . ........+....+.+|+..-..+++.+.....+
T Consensus 90 --------~~~~~iievLL~~g~vl~ALr~ar~~~~--~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~~ 152 (167)
T PF07035_consen 90 --------TAYEEIIEVLLSKGQVLEALRYARQYHK--V-----DSVPARKFLEAAANSNDDQLFYAVFRFFEERNLR 152 (167)
T ss_pred --------hhHHHHHHHHHhCCCHHHHHHHHHHcCC--c-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhHh
Confidence 1344567788888888888888875421 1 1111233444444555666566666666554433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.38 E-value=2.4 Score=40.81 Aligned_cols=144 Identities=13% Similarity=0.061 Sum_probs=93.2
Q ss_pred HhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHH
Q 004273 17 FCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNY 96 (764)
Q Consensus 17 ~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 96 (764)
+...|+..+|. ..+...+...|+. ......++..|...|+.+.|..++..+..............-+..
T Consensus 144 ~~~~e~~~~a~----------~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 144 LIEAEDFGEAA----------PLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred hhhccchhhHH----------HHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 45566666666 4444556666664 555666788999999999999999998765322222222233444
Q ss_pred hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC
Q 004273 97 CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173 (764)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 173 (764)
+.+..+..+..++-+...+. +-|...-..+...+...|+.+.|.+.+-.+..++.-.-|-..-..|+..+.-.|.
T Consensus 213 l~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 213 LEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 55555555555555555443 3477777888999999999999998877666554434444555666666655553
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.08 E-value=1.8 Score=41.08 Aligned_cols=98 Identities=15% Similarity=0.108 Sum_probs=41.8
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHcCc--cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hhhHHHH
Q 004273 89 DFFHILNYCARSPDPLFVMETWRMMEEKEI--GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL-PVYNSFL 165 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li 165 (764)
.|+.-+..+ +.|++..|.+.|...++..- ......+--|..++...|++++|..+|..+.+..+-.|-. ..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444433 23445555555555544320 1112223334445555555555555555544333222221 2333334
Q ss_pred HHHhccCCHHHHHHHHHHHHhc
Q 004273 166 GACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
....+.|+.++|...|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 4444455555555555555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.85 E-value=6.7 Score=32.69 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHhhhc
Q 004273 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681 (764)
Q Consensus 618 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 681 (764)
...+.....+|+-+.-.+++..+.. +-.+++....-+..+|.+-|+..++.+++.+--++|++
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344445555555555555555543 23445555555555666666666665555555555543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.84 E-value=8.7 Score=34.01 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=43.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~ 358 (764)
.+..++..+...|++-+|+.+.+.... .+......++.+..+.+|...-..+|+-..+++
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 667788889999999999888877532 244455667888888888777777776666654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.78 E-value=7.6 Score=39.22 Aligned_cols=94 Identities=7% Similarity=-0.057 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHH
Q 004273 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 294 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 373 (764)
.+++.+.-++.+.+.+..|+..-+..+..+ ++|....--=-.++...|+++.|+..|+.+++..+. |..+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 488889999999999999999999888765 456667667778888999999999999999886543 333344454444
Q ss_pred HhcCCHHHH-HHHHHHH
Q 004273 374 SKALELDLA-EALLDQI 389 (764)
Q Consensus 374 ~~~g~~~~A-~~~~~~~ 389 (764)
.+....... .++|..|
T Consensus 336 ~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 433333222 3444444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.37 E-value=4.7 Score=33.40 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=46.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH---HHHHhcCC
Q 004273 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF---SGYVNCGF 664 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~g~ 664 (764)
++...|+++.|++.|.+.... .+.....||.=..++.-.|+.++|+.-+++.++..-.-......+.+ ..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345566666666666665532 12345566666666666666666666666666532111222222222 24455566
Q ss_pred hHHHHHHHHHH
Q 004273 665 HNSAMEALQVL 675 (764)
Q Consensus 665 ~~~a~~~~~~~ 675 (764)
-+.|..=|+.-
T Consensus 131 dd~AR~DFe~A 141 (175)
T KOG4555|consen 131 DDAARADFEAA 141 (175)
T ss_pred hHHHHHhHHHH
Confidence 66666555543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.79 E-value=26 Score=38.60 Aligned_cols=186 Identities=12% Similarity=0.018 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHH-HhccCCHHHHHHHHHHHHh-------cCCCCChhhHHHHHHHHHhcc--
Q 004273 138 LEEASNLIYFLGERYGIYPILPVYNSFLGA-CAKLHSMVHANLCLDLMDS-------RMVGKNEVTYTELLKLAVWQK-- 207 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-- 207 (764)
...|.++++...+...+.+-...-.....+ +....|.+.|+..|+.+.. .| ......-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 457888888776543222222222333334 5577899999999988876 44 3334555666666533
Q ss_pred ---ChhHHHHHHHHHHccCCCCHHhHHHHHHHhhc-cCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccC
Q 004273 208 ---NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR-LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPL 283 (764)
Q Consensus 208 ---~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (764)
+.+.|..++....+...|+....-..+..... ..+...|.++|....+.|..+-.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~--------------------- 363 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAI--------------------- 363 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHH---------------------
Confidence 56678888888887777776665555444444 35678899999998876654321
Q ss_pred CcccchhhhHhhHHHHHHHH--HccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004273 284 NALPVMKVLRWSFSDVIHAC--GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 284 ~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 360 (764)
-+-+++... ....+...|..++.+..+.| .|-..--...+..+.. ++.+.+.-.+..+.+.|.+
T Consensus 364 -----------~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 364 -----------YRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred -----------HHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 222222222 23457788999999988887 3332222333444444 7777777777777776654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.76 E-value=14 Score=34.50 Aligned_cols=86 Identities=10% Similarity=0.017 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
..|.....+|-...++++|...+.+..+. ..-|...|.+ ...++.|.-+.++|... .--..-|.-....
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~--yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG--YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH--HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 34555566777777777777766655421 1222222221 22344455555555442 1111233444455
Q ss_pred HHhccChhHHHHHHHHH
Q 004273 203 AVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~ 219 (764)
|...|..+.|-..+++.
T Consensus 101 Y~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHhCCcchHHHHHHHH
Confidence 66666666555555544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.17 E-value=20 Score=35.32 Aligned_cols=162 Identities=15% Similarity=0.072 Sum_probs=96.1
Q ss_pred HhcCCcchHHHHHHHhhhccCCCCcch--------HHHHHHHhhCCCChhHHHHHHHHHHHc----C----cccc-----
Q 004273 63 LCRGERSRASHLLLNLGHAHHSLGADD--------FFHILNYCARSPDPLFVMETWRMMEEK----E----IGLN----- 121 (764)
Q Consensus 63 ~~~~~~~~A~~~~~~~~~~~~~~~~~~--------~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----~~~~----- 121 (764)
.+.|+.+.|..++.+........++.. |+.-...+.+..+++.|...+++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 467889999999988865432233322 454455554433787777666665443 1 1222
Q ss_pred HHHHHHHHHHHHccCCHH---HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 004273 122 NKCYLLMMQALCKGGYLE---EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE 198 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 198 (764)
..++..++.+|...+..+ +|.++++.+....|-+| .++-.=+..+.+.++.+++.+++.+|...- .-....+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 245667788888777654 56667776754443333 355555666777899999999999999862 213344555
Q ss_pred HHHHHHh--ccChhHHHHHHHHHHc-cCCCCH
Q 004273 199 LLKLAVW--QKNLSAVHEIWEDYIK-HYSLSI 227 (764)
Q Consensus 199 ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~ 227 (764)
++..+.. ......+...+..+.. ...|..
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 5554422 2334455565655553 344443
|
It is also involved in sporulation []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.00 E-value=12 Score=37.00 Aligned_cols=130 Identities=7% Similarity=-0.008 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCchh
Q 004273 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSL-GLQPS---SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN-----LKPQDS 364 (764)
Q Consensus 294 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~ 364 (764)
.+|-.+.+++-+.-++.+++.+-..-... |..|. .....++-.+....+.++.+++.|+...+.- ......
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 35555556655555555555554443321 22221 1223345566777777888888887766532 222344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCcch---------HHHHHHHhcCCCHHHHHHHHHHHhh
Q 004273 365 TIATLSVECSKALELDLAEALLDQISRCT---NPKPF---------SAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~---------~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
++..|-..|.+..|.++|.-+.....+.. ...-| -.|..++-..|+.-.|.+..++..+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 67778888888888887766554443211 11111 2334455666666666666665544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.84 E-value=4 Score=39.53 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHhhHH
Q 004273 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ-----NKVQPDPSTCH 653 (764)
Q Consensus 579 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 653 (764)
..++..++..+...|+.+.+.+.++++.... +-|...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456777888888888888888888887543 34777888888888888888888888887765 57777776654
Q ss_pred HHHHH
Q 004273 654 FVFSG 658 (764)
Q Consensus 654 ~ll~~ 658 (764)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=89.79 E-value=38 Score=37.92 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=21.5
Q ss_pred CccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 004273 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319 (764)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 319 (764)
+..+..+|..++..-.|..-.-..+..+..++|.+++++-
T Consensus 288 ~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~ 327 (608)
T PF10345_consen 288 PLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKA 327 (608)
T ss_pred eeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHH
Confidence 3445566666665444444344445556555666665554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.45 E-value=1.5 Score=28.73 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004273 582 YTALIKILLDYGDFDEALNLLDLVSL 607 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (764)
+..+...|.+.|++++|.++|+++.+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455555555555555555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.25 E-value=1 Score=29.54 Aligned_cols=27 Identities=15% Similarity=-0.007 Sum_probs=13.4
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004273 161 YNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+..+...|.+.|++++|+++|+...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444555555555555555555443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.15 E-value=20 Score=33.72 Aligned_cols=224 Identities=13% Similarity=-0.104 Sum_probs=154.7
Q ss_pred cCCcchHHHHHHHhhhccCC-CCcchHHHHHHHhhCCCChhHHHHHHHHHHHc-CccccHHHHHHHHHHHHccCCHHHHH
Q 004273 65 RGERSRASHLLLNLGHAHHS-LGADDFFHILNYCARSPDPLFVMETWRMMEEK-EIGLNNKCYLLMMQALCKGGYLEEAS 142 (764)
Q Consensus 65 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 142 (764)
.+....+...+......... .....+......+...++...+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666666554421 12456677777777888888888888887763 23455667777778888888999999
Q ss_pred HHHHHHhhhcCCCCChhhhHHHHH-HHhccCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhccChhHHHHHHHHH
Q 004273 143 NLIYFLGERYGIYPILPVYNSFLG-ACAKLHSMVHANLCLDLMDSRMV--GKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (764)
..+......... +......... .+...|+++.|...+........ ......+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPD--PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCC--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 999887643211 1122333333 68889999999999999855321 123333444444466788999999999999
Q ss_pred HccCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHH
Q 004273 220 IKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298 (764)
Q Consensus 220 ~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (764)
.+..+. ....+..+...+...++.+.|...+..... ..|.. ...+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~------------------------------~~~~~~ 241 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDN------------------------------AEALYN 241 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCccc------------------------------HHHHhh
Confidence 988777 688899999999999999999999999887 33321 023444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC
Q 004273 299 VIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 299 li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
+...+...+..+.+...+.+....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 242 LALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444667788888888888765
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=88.99 E-value=18 Score=37.55 Aligned_cols=128 Identities=9% Similarity=-0.077 Sum_probs=73.0
Q ss_pred HHHHHHHhcc-----CCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHH-h---------ccChhHHHHHHHHHHccCCC
Q 004273 162 NSFLGACAKL-----HSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAV-W---------QKNLSAVHEIWEDYIKHYSL 225 (764)
Q Consensus 162 ~~li~~~~~~-----g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~-~---------~~~~~~a~~~~~~~~~~~~~ 225 (764)
...+.+.... -+.+.|+.+|.+.... .+.|+-..-..++..|. . ..+..+|.++-+..++..+.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 5555554431 2456788888887722 34555433222222221 1 22234555556666666677
Q ss_pred CHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHc
Q 004273 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR 305 (764)
Q Consensus 226 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 305 (764)
|+.+...+..+..-.++++.|..+|++... +.|+.. .+|........-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A------------------------------~~~~~~~~~~~~ 384 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIA------------------------------SLYYYRALVHFH 384 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccH------------------------------HHHHHHHHHHHH
Confidence 777777777766666777777777777766 555541 244444444455
Q ss_pred cCCHHHHHHHHHHHHH
Q 004273 306 TQNSGLAEQLMLQMQS 321 (764)
Q Consensus 306 ~g~~~~a~~~~~~m~~ 321 (764)
+|+.++|.+.+++-.+
T Consensus 385 ~G~~~~a~~~i~~alr 400 (458)
T PRK11906 385 NEKIEEARICIDKSLQ 400 (458)
T ss_pred cCCHHHHHHHHHHHhc
Confidence 6777777777777544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.80 E-value=4.1 Score=39.30 Aligned_cols=104 Identities=8% Similarity=0.032 Sum_probs=58.6
Q ss_pred CccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC--CCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh
Q 004273 117 EIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYG--IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV 194 (764)
Q Consensus 117 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 194 (764)
|.+....+...++..-....+++.++..+-.+..... ..|+. +-.+.++.+. .-++++++.++..=.+.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4344444555555555555666777666665543210 11111 1122233222 335567777776666777777777
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHcc
Q 004273 195 TYTELLKLAVWQKNLSAVHEIWEDYIKH 222 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (764)
+++.+|..+.+.+++..|.++...++..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777777766666543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.62 E-value=24 Score=36.90 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-cc-CCCHHhHHHHH
Q 004273 364 STIATLSVECSKALELDLAEALLDQISRCT----NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KL-RPDIRTYELLF 436 (764)
Q Consensus 364 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~-~p~~~t~~~ll 436 (764)
.+-..|..++-+.|+.++|.+.|.++.+.. .......|+.++...+.+.++..++.+-.+ .. +.-...|+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 333456667777888888888888886532 223556788888888888888888887654 22 22334555544
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.41 E-value=12 Score=36.56 Aligned_cols=119 Identities=8% Similarity=-0.100 Sum_probs=89.7
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHH--HH--HHHhcc
Q 004273 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL--LK--LAVWQK 207 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~--~~~~~~ 207 (764)
+-..|+..+|-..++++.+. .+.|...++-.=.+|.-.|+.+.....++.+... -.||...|+.+ +- ++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 34568888888888888754 4567777888888888899999888888887654 23444333322 22 334678
Q ss_pred ChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHH
Q 004273 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 253 (764)
-+++|++.-++..+-.+.|..+-.++.+++--.|++.++.++..+-
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 8999999998888888888888889999999999999998876553
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.26 E-value=3.8 Score=39.66 Aligned_cols=76 Identities=12% Similarity=-0.067 Sum_probs=48.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHh-----cCCCCChhhHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-----RMVGKNEVTYTE 198 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 198 (764)
++..++..+...|+++.+...++++.+.+ +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45556666677777777777777776544 33556777777777777777777777766654 366666555444
Q ss_pred HHH
Q 004273 199 LLK 201 (764)
Q Consensus 199 ll~ 201 (764)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=88.14 E-value=31 Score=36.02 Aligned_cols=137 Identities=9% Similarity=-0.032 Sum_probs=92.4
Q ss_pred HHH--HHHHHHHHcc-----CCHHHHHHHHHHHhhhcCCCCChh-hhHHHHHHHh---------ccCCHHHHHHHHHHHH
Q 004273 123 KCY--LLMMQALCKG-----GYLEEASNLIYFLGERYGIYPILP-VYNSFLGACA---------KLHSMVHANLCLDLMD 185 (764)
Q Consensus 123 ~~~--~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~---------~~g~~~~A~~~~~~m~ 185 (764)
..| ...+.+.... -..+.|..+|.+...+..+.|+-. .|..+..++. ...+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 4555554431 235678888888874444555533 3333322221 1344567777777777
Q ss_pred hcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 186 SRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 186 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
+.+.. |......+-.+....++++.+...|++...-.|....+|........-+|+.+.|.+.+++..+ +.|..
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~ 405 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRR 405 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchh
Confidence 76533 6777666666667778899999999999888888888888888888889999999999999776 55543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.13 E-value=6.8 Score=35.41 Aligned_cols=94 Identities=16% Similarity=0.081 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHhhHHH
Q 004273 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV--LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP---DPSTCHF 654 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ 654 (764)
..+..+.+.|++.|+.++|.+.|.++.+....|.. ..+-.+|+.+.-.+++..+...+.+....--.+ +...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45677888888889999999888888765544443 356677888888888888888777766432221 1111111
Q ss_pred HHH--HHHhcCChHHHHHHHH
Q 004273 655 VFS--GYVNCGFHNSAMEALQ 673 (764)
Q Consensus 655 ll~--~~~~~g~~~~a~~~~~ 673 (764)
... .+...|++.+|-+.|-
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHH
Confidence 122 3344566776666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.46 E-value=20 Score=31.67 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=19.5
Q ss_pred CChhHHHHHHHHHHHcCccccHH-HHHHHHHHHHccCCHHHHHHHHHHH
Q 004273 101 PDPLFVMETWRMMEEKEIGLNNK-CYLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 148 (764)
+..++|+..|..+.+.|...-+. ..-......+..|+-..|...|+++
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdei 120 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEI 120 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 33444444444444444322111 1122233334444555555555544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.41 E-value=7.2 Score=37.76 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 004273 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 629 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 679 (764)
+.++++.++..=...|+.||..+++.+++.+.+.|.+.+|..+.-.|..+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 444555555554555555555555555555555555555555555444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.38 E-value=1.2 Score=27.60 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=20.2
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 229 SLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
++..|..+|.+.|++++|+++|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366777888888888888888888654
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.86 E-value=0.046 Score=47.80 Aligned_cols=83 Identities=19% Similarity=0.045 Sum_probs=38.6
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
+..+.+.+.++.+...++.+...+...+....+.++..|++.+..+...++++. .+.+-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcchH
Confidence 333444555555555555555444334444555555555555444444444441 1112223444455555555
Q ss_pred HHHHHHHHHH
Q 004273 139 EEASNLIYFL 148 (764)
Q Consensus 139 ~~A~~~~~~~ 148 (764)
++|.-++.++
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 5555555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.50 E-value=74 Score=37.32 Aligned_cols=152 Identities=12% Similarity=0.155 Sum_probs=97.1
Q ss_pred CcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCChhHHHHH
Q 004273 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS----IIRCFKSASAL 566 (764)
Q Consensus 491 g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~ 566 (764)
++++.|+.-+..++ ...|.-.++.--++|.+.+|+.++ +|+...+.-+..+|+ ....+++|.-+
T Consensus 894 ~ry~~AL~hLs~~~----~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG----ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHcC----ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 45666666665553 234455555556677777777775 577776666655554 45677777766
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004273 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL--LYNTILKKACEKGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 567 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 644 (764)
|+..-+ ..--+.+|..+|++.+|+.+..++.. ..|.. +-..|+.-+...++.-+|-++..+...
T Consensus 962 Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-- 1027 (1265)
T KOG1920|consen 962 YERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-- 1027 (1265)
T ss_pred HHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc--
Confidence 665432 12346778888888888888887641 12222 225677778888888888887777653
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 004273 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674 (764)
Q Consensus 645 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 674 (764)
.|. -.+..|+++-.|++|..+...
T Consensus 1028 -d~~-----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1028 -DPE-----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred -CHH-----HHHHHHhhHhHHHHHHHHHHh
Confidence 222 235677888888888776653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.50 E-value=0.71 Score=28.21 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=25.9
Q ss_pred HHHHHccCCCCHHhHHHHHHHhhccCCHHHHH
Q 004273 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
|++.++..|.++.+|+.+..+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555667888889999999999999998885
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.20 E-value=1.9 Score=26.73 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=10.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 004273 617 YNTILKKACEKGRIDVIEFIIEQ 639 (764)
Q Consensus 617 ~~~li~~~~~~g~~~~a~~~~~~ 639 (764)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=86.09 E-value=39 Score=35.44 Aligned_cols=63 Identities=10% Similarity=0.119 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004273 580 MTYTALIKILLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
.+-..|..++-+.|+.++|.+.+++|.+. ...-+..+...|+..+...+.+.++..++.+--+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33345666777889999999999999753 2122344777899999999999999999988754
|
The molecular function of this protein is uncertain. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.60 E-value=6.1 Score=30.80 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=20.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004273 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 602 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 641 (764)
++.+....+-|++.+..+.+++|.+-+|+..|.++++-.+
T Consensus 30 mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 30 LNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333334445555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.49 E-value=0.99 Score=27.58 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=14.6
Q ss_pred cccHHHHHHHHHHHHccCCHHHHH
Q 004273 119 GLNNKCYLLMMQALCKGGYLEEAS 142 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~ 142 (764)
|-|...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345556666666666666666654
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=84.91 E-value=51 Score=36.89 Aligned_cols=88 Identities=20% Similarity=0.224 Sum_probs=43.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh---
Q 004273 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILLD--- 591 (764)
Q Consensus 516 i~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~--- 591 (764)
...+.-.|.+|.|.+.+-+ ..+...+.+.+.+.+..|.-.+-.+... ..+.... -.|...-+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455667899999988877 2334566777766666554332222211 2222211 11222567788888876
Q ss_pred cCCHHHHHHHHHHHHHC
Q 004273 592 YGDFDEALNLLDLVSLE 608 (764)
Q Consensus 592 ~g~~~~A~~~~~~m~~~ 608 (764)
..+..+|.+++--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 35788888888776643
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.90 E-value=34 Score=31.96 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=13.4
Q ss_pred HHccCCHHHHHHHHHHHHHCC
Q 004273 303 CGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 303 ~~~~g~~~~a~~~~~~m~~~g 323 (764)
-+..+++.+|+++|++.....
T Consensus 164 aa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777777766543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.67 E-value=8.6 Score=34.78 Aligned_cols=64 Identities=13% Similarity=0.058 Sum_probs=39.5
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCC
Q 004273 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 308 (764)
.+..+...|++.|+.+.|.+.|.++.+....+... ...+-.+|+.....++
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~-----------------------------id~~l~~irv~i~~~d 88 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK-----------------------------IDMCLNVIRVAIFFGD 88 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH-----------------------------HHHHHHHHHHHHHhCC
Confidence 45566667777777777777777776643333221 1355566777777777
Q ss_pred HHHHHHHHHHHHH
Q 004273 309 SGLAEQLMLQMQS 321 (764)
Q Consensus 309 ~~~a~~~~~~m~~ 321 (764)
+..+...+.+...
T Consensus 89 ~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 89 WSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.64 E-value=27 Score=30.62 Aligned_cols=16 Identities=25% Similarity=0.219 Sum_probs=7.4
Q ss_pred HccCCHHHHHHHHHHH
Q 004273 133 CKGGYLEEASNLIYFL 148 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~ 148 (764)
...|+|.+|+++|+++
T Consensus 55 i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 55 IVRGDWDDALRLLREL 70 (160)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3444444444444444
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.36 E-value=6.2 Score=31.12 Aligned_cols=47 Identities=6% Similarity=-0.060 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004273 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 151 (764)
+.++-++.+...+.-|++.+..+.+.+|-+.+++..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555555443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.34 E-value=29 Score=30.70 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH-HHHHH--H
Q 004273 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT-YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM-TYTAL--I 586 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~-~~~~l--i 586 (764)
.|...+. +++.+..++|+.-|.++.+.|..--++. -..+-......|+...|...|+++-.....|-+. -...| .
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3443333 3566778888888888888765432221 1122233556788888888888887765444433 11111 1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh
Q 004273 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
..+...|.+++...-.+-+...+-+.....-..|--+-.+.|++..|.++|+.+......|...
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 2345677787777777766544433344455566666778888888888888877644445433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.23 E-value=36 Score=31.80 Aligned_cols=96 Identities=14% Similarity=-0.006 Sum_probs=43.8
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHH-H
Q 004273 159 PVYNSFLGACAKLHSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW-S 236 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~-~ 236 (764)
..+......+...+++..+...+...... ........+......+...+++..+...+.......+.+......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444555555555555555555554431 112233333334444444444555555555444432222222222222 4
Q ss_pred hhccCCHHHHHHHHHHHH
Q 004273 237 FTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 237 ~~~~g~~~~A~~~~~~m~ 254 (764)
+...|+++.|...+.+..
T Consensus 140 ~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 140 LYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 556666666666666653
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.58 E-value=8.4 Score=30.08 Aligned_cols=49 Identities=8% Similarity=-0.065 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc
Q 004273 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
|.-++.+-++.+-...+.|++....+.|++|.+.+|+..|.++++.+..
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555566666666777777777777777777777777777776654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.69 E-value=8.1 Score=30.51 Aligned_cols=46 Identities=9% Similarity=-0.031 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc
Q 004273 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
+..+-++.+-...+.|++....+.|++|.+.+|+..|.++++.+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555555666666666666666666666666666666554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.67 E-value=16 Score=33.39 Aligned_cols=80 Identities=13% Similarity=-0.041 Sum_probs=56.2
Q ss_pred hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc--CCCCChhhhHHHHHHHhccCCH
Q 004273 97 CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY--GIYPILPVYNSFLGACAKLHSM 174 (764)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~ 174 (764)
+.+.|| ..|++.|-.+...+.--++....+|...|. ..+.++++.++....+.. +-.+|...+.+|+..|-+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445565 457777777777765556666666666665 567888888887765432 2246777888899999888888
Q ss_pred HHHH
Q 004273 175 VHAN 178 (764)
Q Consensus 175 ~~A~ 178 (764)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=82.37 E-value=34 Score=33.27 Aligned_cols=126 Identities=13% Similarity=0.196 Sum_probs=75.6
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHH-cCccccHHHHHHHHHHHHc-cC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEE-KEIGLNNKCYLLMMQALCK-GG-YLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
|..++. ++.-.-+|+.+|+.... ..+--|..+-..+++.... .+ ....--++.+-+....+-.++..+-..+|.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 666664 33345556666663222 2344566666666666655 22 222222333333333344566667777778
Q ss_pred HHhccCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhccChhHHHHHHHH
Q 004273 167 ACAKLHSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
.++..+++.+-.++++..... ++.-|...|...|+.....||..-...+.+.
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888888888877777766554 5666777788888888888887766666543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.34 E-value=35 Score=36.56 Aligned_cols=99 Identities=16% Similarity=0.036 Sum_probs=45.9
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHH
Q 004273 134 KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (764)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|...+. |..|+-.+...|+-+...
T Consensus 649 ~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 4455555555544331 234555555555555555555555554433 233444444444444333
Q ss_pred HHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHH
Q 004273 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253 (764)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 253 (764)
.+-....+....+.. ..+|...|+++++.+++..-
T Consensus 713 ~la~~~~~~g~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQGKNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhcccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 333333332222221 12344556666665555443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.08 E-value=98 Score=34.53 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=14.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhh
Q 004273 401 FLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 401 li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
|..-|...+++..|++++-..++
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHccChHHHHHHHHhccC
Confidence 55666666677777666655543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.06 E-value=82 Score=34.76 Aligned_cols=153 Identities=12% Similarity=0.030 Sum_probs=73.6
Q ss_pred HHcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHccC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004273 520 VEAQESHRAMEIFKQMKT-------CGIPPNAATYNIMIDCCSIIR-----CFKSASALVSMMVRDGFYPQTMTYTALIK 587 (764)
Q Consensus 520 ~~~~~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 587 (764)
....+.+.|+.+|+.+.+ .| +......+-.+|.+.. +.+.|..++....+.|. |+...+-..+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 344567777777776655 44 2223444444454432 45567777777776663 33333222222
Q ss_pred HHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 004273 588 ILLD-YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA--CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664 (764)
Q Consensus 588 ~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 664 (764)
.... ..+...|.++|......|.. +...+..+.-.. ....+.+.|..++++.-+.| .|...--...+..+.. ++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence 2111 13456777777777666632 222222221111 12335667777777777666 2221111112223333 56
Q ss_pred hHHHHHHHHHHHHhh
Q 004273 665 HNSAMEALQVLSMRM 679 (764)
Q Consensus 665 ~~~a~~~~~~~~~~~ 679 (764)
++.+.-.+..+...+
T Consensus 413 ~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 413 YDTALALYLYLAELG 427 (552)
T ss_pred ccHHHHHHHHHHHhh
Confidence 665555555444433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.86 E-value=4.5 Score=24.40 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=21.9
Q ss_pred HhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 228 FSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.+|..+..+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4567777888888888888888888887
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 70.6 bits (171), Expect = 1e-12
Identities = 19/172 (11%), Positives = 45/172 (26%), Gaps = 7/172 (4%)
Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF------CDSKTPLGTPTYNTVL 516
A ++ + + K + + L YN V+
Sbjct: 113 APSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 172
Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS-IIRCFKSASALVSMMVRDGF 575
+ + +K G+ P+ +Y + C + + + M ++G
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGL 232
Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
Q + L+ + SL + + +L+ K
Sbjct: 233 KLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.4 bits (142), Expect = 3e-09
Identities = 25/192 (13%), Positives = 58/192 (30%), Gaps = 5/192 (2%)
Query: 510 PTYNTVLHSLVEAQESHRAMEI---FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
+ + A + + YN ++ + FK +
Sbjct: 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYV 187
Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN-LLDLVSLEGIPHDVLLYNTILKKAC 625
+ M+ G P ++Y A ++ + + L+ +S EG+ L +L +
Sbjct: 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247
Query: 626 EKGRIDVIEFIIEQMHQNKVQPDP-STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
+ + + P P +T + Y G + L + +++ L E+
Sbjct: 248 RATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
Query: 685 STLEEKRSDFED 696
+E
Sbjct: 308 LHMELASRVCVV 319
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.4 bits (129), Expect = 1e-07
Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 2/133 (1%)
Query: 71 ASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130
A L A S + +L + ++ + L +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 131 ALCKGGYLEEASNLIYFLGERY--GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
L A +L+ + L +YN+ + A+ + L ++
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 189 VGKNEVTYTELLK 201
+ + ++Y L+
Sbjct: 196 LTPDLLSYAAALQ 208
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 1e-06
Identities = 47/369 (12%), Positives = 108/369 (29%), Gaps = 98/369 (26%)
Query: 3 RPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTT--TMGLNEESISKATQMQIV 60
+ LL TRF+ + D F + H + S TLT L + K +
Sbjct: 267 KILLTTRFKQVTD-FLSAATTTHISLD-----HHSMTLTPDEVKSL----LLKYLDCRPQ 316
Query: 61 D-----------------ALCRGERSRASHLLLNLGHAHHS--------LGADDFFHILN 95
D R + + + L ++ + +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 96 YCARSPD----PLFVMET-WRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE 150
+ P P ++ W + + ++ ++++ L K +E+
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDV-------MVVVNKLHKYSLVEKQPK-----ES 424
Query: 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210
I I Y +++ H +V Y +L
Sbjct: 425 TISIPSI---YLELKVKLENEYAL-HR---------SIVDH----YNIPKTFDSD--DLI 465
Query: 211 AVHEIWEDYIKHY------------SLSIFSLRKFV---WSFTRLRDLKSAYETLQHMVA 255
+ + Y + +++F F+ + ++R +A+ ++
Sbjct: 466 PPY--LDQYFYSHIGHHLKNIEHPERMTLFR-MVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 256 LAMMGKLYINRTSEGRLRSSRL--DIPIPLNALPVM--KVLRWSFSDVIHACGRTQNSGL 311
K Y + + RL I L+ LP + ++ ++D++ ++ +
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAI---LDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 312 AEQLMLQMQ 320
E+ Q+Q
Sbjct: 580 FEEAHKQVQ 588
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 764 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.71 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.63 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.59 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.48 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.48 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.47 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.47 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.46 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.44 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.43 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.43 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.42 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.42 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.42 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.41 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.39 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.36 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.34 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.34 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.33 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.32 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.31 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.3 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.29 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.27 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.25 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.24 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.23 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.23 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.2 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.2 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.19 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.17 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.12 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.11 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.08 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.07 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.04 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.03 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.03 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.97 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.96 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.96 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.93 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.87 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.85 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.8 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.79 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.79 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.78 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.78 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.76 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.71 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.69 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.69 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.67 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.66 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.66 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.64 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.63 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.62 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.62 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.62 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.6 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.6 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.59 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.59 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.59 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.58 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.58 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.58 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.51 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.49 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.49 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.43 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.35 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.35 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.33 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.33 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.29 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.27 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.27 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.26 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.26 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.26 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.25 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.25 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.24 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.24 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.23 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.22 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.22 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.22 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.2 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.19 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.19 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.18 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.17 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.16 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.15 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.12 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.11 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.11 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.07 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.06 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.03 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.02 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.0 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.0 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.99 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.98 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.97 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.97 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.93 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.92 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.91 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.91 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.86 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.86 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.86 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.85 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.83 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.82 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.8 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.79 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.79 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.79 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.79 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.77 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.73 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.73 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.72 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.72 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.68 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.61 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.61 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.56 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.53 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.51 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.48 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.45 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.38 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.35 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.3 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.29 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.29 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.27 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.25 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.24 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.23 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.23 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.22 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.2 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.15 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.08 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.06 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.96 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.92 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.88 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.87 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.75 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.7 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.7 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.67 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.55 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.42 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.23 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.09 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.87 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.66 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.62 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.24 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.18 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.16 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.02 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.91 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.86 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.61 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.55 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.55 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.2 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.2 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.15 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.86 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.75 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.71 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.35 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.19 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.87 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.12 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.06 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.73 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.69 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.07 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.46 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.14 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.15 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.69 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.12 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.04 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.4 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.64 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.23 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.18 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 80.99 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.6 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 80.07 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=345.01 Aligned_cols=500 Identities=12% Similarity=-0.026 Sum_probs=291.7
Q ss_pred cCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004273 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144 (764)
Q Consensus 65 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 144 (764)
.|....+...+..+. .++...|+.++..|.+.|+++.|+.+|++|... .|+..++..++.+|.+.|++++|..+
T Consensus 66 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 344444444444332 244556777777777777777777777777743 45666777777777777777777777
Q ss_pred HHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCC
Q 004273 145 IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS 224 (764)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 224 (764)
|+.+.. .+++..+++.++.+|.+.|++++|.++|+++.. +.. ...++...+ ....+.+
T Consensus 140 ~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~----------~~~~~~~ 197 (597)
T 2xpi_A 140 LTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLL----------MQDGGIK 197 (597)
T ss_dssp HHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT-----TC------------------------CCCSSCC
T ss_pred HHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCC-----ccc----ccccccccc----------ccccccc
Confidence 776642 245666777777777777777777777764211 110 000000000 0001123
Q ss_pred CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHH
Q 004273 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304 (764)
Q Consensus 225 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 304 (764)
.+..+|+.++.+|.+.|++++|.++|++|.+. .|+.. ..|..+...+.
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~------------------------------~~~~~l~~~~~ 245 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMV--DAKCY------------------------------EAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH------------------------------HHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Cchhh------------------------------HHHHHHHHhhc
Confidence 34555555555555555555555555555552 23221 23444443333
Q ss_pred ccCCHHHHHH--H-HHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHH
Q 004273 305 RTQNSGLAEQ--L-MLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381 (764)
Q Consensus 305 ~~g~~~~a~~--~-~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (764)
..+..+.+.. + +..+...+..++..+|+.++..|.+.|++++|.++|+++.+. .++..++..++.+|.+.|++++
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHH
Confidence 3322222111 1 334443333334444555555555555555555555555443 2455555555566666666666
Q ss_pred HHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHH
Q 004273 382 AEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459 (764)
Q Consensus 382 A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 459 (764)
|..+|+++.... +..+|+.++.+|.+.|++++|..+|+++... .|
T Consensus 324 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-------------------------------- 370 (597)
T 2xpi_A 324 VLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HP-------------------------------- 370 (597)
T ss_dssp HHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT--------------------------------
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-Cc--------------------------------
Confidence 666665554322 5555666666666666666666666666541 11
Q ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 004273 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537 (764)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~ 537 (764)
.+..+++.++..|.+.|++++|.+.|+++. .+.+..+|+.++.+|.+.|++++|+++|++|.+
T Consensus 371 ---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 371 ---------------EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp ---------------TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122333444555566666666666665431 233456777777777788888888888887776
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC
Q 004273 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE----GIPHD 613 (764)
Q Consensus 538 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~ 613 (764)
.+ +.+..+|..+..+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+
T Consensus 436 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 436 LF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp TT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred hC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 54 3466777777778888888888888887777653 336677778888888888888888888777654 55676
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004273 614 --VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 614 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.++++++..
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 6677888888888888888888888777643 23566777777788888888888888777654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-37 Score=341.30 Aligned_cols=497 Identities=11% Similarity=-0.054 Sum_probs=357.6
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 004273 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL 199 (764)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (764)
++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..+|+.+... .++..+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 35556666666666666666666666666432 345556666666666666666666666655432 4455555555
Q ss_pred HHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCC
Q 004273 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (764)
+.+|.+.|++++|.++|+++... +.. ...+.+.++. ..+..++.
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~---~~~-----~~~~~~~~~~-----------~~~~~~~~----------------- 200 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPF---RKD-----EKNANKLLMQ-----------DGGIKLEA----------------- 200 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTT---C---------------CC-----------CSSCCHHH-----------------
T ss_pred HHHHHHHhhHHHHHHHHhccCCc---ccc-----cccccccccc-----------ccccchhH-----------------
Confidence 55555555555555555532110 000 0000000000 00111122
Q ss_pred CccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhH--HHHH-HHHHH
Q 004273 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLRN--GMEV-LKIMQ 355 (764)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~--a~~~-~~~m~ 355 (764)
.+|+.++.+|.+.|++++|.++|++|.+.+ |+. ..+..+...+...+.... +..+ +..+.
T Consensus 201 --------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 264 (597)
T 2xpi_A 201 --------------SMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYS 264 (597)
T ss_dssp --------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHH
T ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccc
Confidence 699999999999999999999999999864 544 445555544433322222 2222 66667
Q ss_pred HCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHH
Q 004273 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYE 433 (764)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~ 433 (764)
..+..+...+|+.++..|.+.|++++|.++|+++...+ +..+|+.++.+|.+.|++++|+.+|+++.+ + |
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~------ 336 (597)
T 2xpi_A 265 KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--P------ 336 (597)
T ss_dssp GGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------
T ss_pred cchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--c------
Confidence 77766677788888999999999999999999997743 889999999999999999999999999987 3 2
Q ss_pred HHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc--CCCCChhh
Q 004273 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGTPT 511 (764)
Q Consensus 434 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~ 511 (764)
.+..+++.++..|.+.|++++|..+|+.+ ..+.+..+
T Consensus 337 -----------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 375 (597)
T 2xpi_A 337 -----------------------------------------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375 (597)
T ss_dssp -----------------------------------------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred -----------------------------------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHH
Confidence 12333555677788889999999999875 23456789
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004273 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591 (764)
Q Consensus 512 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 591 (764)
|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..+|+.++.+|.+
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 9999999999999999999999998853 3468899999999999999999999999999874 4578899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HhhHHHHHHHHHhcCCh
Q 004273 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN----KVQPD--PSTCHFVFSGYVNCGFH 665 (764)
Q Consensus 592 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~ 665 (764)
.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++
T Consensus 454 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 999999999999998753 457899999999999999999999999999875 66888 67999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCchHhhHHHHHHhhhhccHHHHHHHHH-HhhhcchhhHHHHhhhhh
Q 004273 666 NSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQ-FCEDSNENLAFTAALLQL 729 (764)
Q Consensus 666 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~a~~~~l~~~ 729 (764)
++|.++++++.... |. ...........+...++.+.+...++ .+..+++.......|.++
T Consensus 533 ~~A~~~~~~~~~~~--p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 533 DAAIDALNQGLLLS--TN--DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHHHHS--SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC--CC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 99999999887654 22 22223334444555666665555544 445566655545544443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=270.05 Aligned_cols=195 Identities=17% Similarity=0.180 Sum_probs=175.9
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCC
Q 004273 397 PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475 (764)
Q Consensus 397 ~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (764)
.++.+|.+|++.|++++|+++|++|.+ |++||..||+++|.+|++.+...+.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------------------------- 80 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------------------------- 80 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------------------------
Confidence 478889999999999999999999999 9999999999999999876542111
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004273 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555 (764)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 555 (764)
.+.+..++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 81 --------------------------------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~ 116 (501)
T 4g26_A 81 --------------------------------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV 116 (501)
T ss_dssp --------------------------------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred --------------------------------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 123446788999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004273 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635 (764)
Q Consensus 556 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 635 (764)
+.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+
T Consensus 117 ~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ 196 (501)
T 4g26_A 117 AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYK 196 (501)
T ss_dssp HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 004273 636 IIEQMHQNKVQPDPSTCHFVFSGYVNC 662 (764)
Q Consensus 636 ~~~~m~~~~~~p~~~~~~~ll~~~~~~ 662 (764)
++++|.+.|..|+..||+.++..|...
T Consensus 197 ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 197 TLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999888763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=258.38 Aligned_cols=184 Identities=16% Similarity=0.242 Sum_probs=173.6
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---------hhHHHHHHHHHHHCCCCCCH
Q 004273 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC---------FKSASALVSMMVRDGFYPQT 579 (764)
Q Consensus 509 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~p~~ 579 (764)
...++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. +++|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888999999999999999999999999999999999999999997654 68899999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 004273 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 659 (764)
.+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHhhhccccCchHhhHH
Q 004273 660 VNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRS 692 (764)
Q Consensus 660 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 692 (764)
++.|++++|.+++++|+..+..|...++..+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~ 218 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEE 218 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 999999999999999999999887666544333
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-23 Score=217.92 Aligned_cols=284 Identities=10% Similarity=-0.007 Sum_probs=137.2
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHH
Q 004273 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 178 (764)
+.|+++.|.+.++.+.+.. +.+...+..+...+...|++++|..+++...+.. +.+..+|..+..+|.+.|++++|+
T Consensus 11 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 3445555555555544442 2233344444444455555555555555444322 233345555555555555555555
Q ss_pred HHHHHHHhcCCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 004273 179 LCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA 257 (764)
Q Consensus 179 ~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 257 (764)
..|+.+.+. .| +..+|..+..++...|++++|.+.++.+.+..+.+...+..+...+...|++++|.+.|+++.+
T Consensus 88 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-- 163 (388)
T 1w3b_A 88 EHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE-- 163 (388)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--
Confidence 555555443 22 2234455555555555555555555555544444445555555555666666666666666655
Q ss_pred hcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 004273 258 MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337 (764)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 337 (764)
..|+. ..+|+.+...+...|++++|...|+++.+.+ +.+...+..+...
T Consensus 164 ~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 212 (388)
T 1w3b_A 164 TQPNF------------------------------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNV 212 (388)
T ss_dssp HCTTC------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hCCCC------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 23332 1355666666666666666666666665542 1123344455555
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHH
Q 004273 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAI 415 (764)
Q Consensus 338 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 415 (764)
+...|++++|...+++..+.... +..++..+...|.+.|++++|...|+++.... ++.+|..+...+.+.|++++|.
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555555543322 23334444444444444444444444433321 2223344444444444444444
Q ss_pred HHHHHH
Q 004273 416 KIFAKM 421 (764)
Q Consensus 416 ~l~~~m 421 (764)
..|+++
T Consensus 292 ~~~~~a 297 (388)
T 1w3b_A 292 DCYNTA 297 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-23 Score=217.36 Aligned_cols=375 Identities=10% Similarity=0.025 Sum_probs=221.9
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHH
Q 004273 167 ACAKLHSMVHANLCLDLMDSRMVGKN-EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
.+.+.|++++|+..++.+.+. .|+ ...+..+...+...|++++|...++...+..+.+..+|..+..+|.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 344555555555555555543 222 22333334444555555555555555555555555666666666666666666
Q ss_pred HHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004273 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 246 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 325 (764)
|...|+++.+ ..|+. ..+|..+..++.+.|++++|.+.|+++.+. .
T Consensus 86 A~~~~~~al~--~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~ 131 (388)
T 1w3b_A 86 AIEHYRHALR--LKPDF------------------------------IDGYINLAAALVAAGDMEGAVQAYVSALQY--N 131 (388)
T ss_dssp HHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHH--cCcch------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 6666666655 33333 135556666666666666666666666553 2
Q ss_pred CCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHH
Q 004273 326 PSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFL 402 (764)
Q Consensus 326 p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li 402 (764)
|+.. .+..+...+...|++++|..+|+++.+.... +..++..+...|.+.|++++|...|+++.... +...|..+.
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 210 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3333 2334444555556666666666555554322 23444444444555555555554444443321 233344444
Q ss_pred HHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHH
Q 004273 403 AACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482 (764)
Q Consensus 403 ~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (764)
..+...|++++|+..|++... .
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~-~--------------------------------------------------------- 232 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALS-L--------------------------------------------------------- 232 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHH-H---------------------------------------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHh-h---------------------------------------------------------
Confidence 555555555555555544432 0
Q ss_pred HHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhH
Q 004273 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562 (764)
Q Consensus 483 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 562 (764)
.+.+..+|..+...+...|++++|+..|+++.+.+ +.+..+|..+..++.+.|++++
T Consensus 233 ----------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 233 ----------------------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp ----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHH
T ss_pred ----------------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 12234566777777778888888888888887753 2346677778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004273 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 563 a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
|...|+++.+.. +.+..+++.+...+.+.|++++|.+.++++.+.. +.+..++..+...|.+.|++++|...++++.+
T Consensus 290 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 290 AEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888888887753 4567778888888888888888888888887532 34567788888888888888888888888875
Q ss_pred CCCCCC-HhhHHHHHHHHHhcC
Q 004273 643 NKVQPD-PSTCHFVFSGYVNCG 663 (764)
Q Consensus 643 ~~~~p~-~~~~~~ll~~~~~~g 663 (764)
..|+ ...|..+...+...|
T Consensus 368 --~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 368 --ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp --TCTTCHHHHHHHHHHHHHTC
T ss_pred --hCCCCHHHHHhHHHHHHHcc
Confidence 4554 334444444444433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-20 Score=202.08 Aligned_cols=340 Identities=11% Similarity=-0.075 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 131 (764)
...+......+.+.|++++|+..|+++...+ |+...|..+..++...|+++.|++.++.+.+.+ +.+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4556666788899999999999999999876 688889999999999999999999999999875 5567789999999
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhH
Q 004273 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
|.+.|++++|...|+++.+.. +++......++..+.+......+.+.+..+...+..|+...+..-............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 999999999999999987543 345556666666666555555555555444443333333322221111111222222
Q ss_pred HHHHHHHHHcc----------CCCCHHhHHHHHHHhhc---cCCHHHHHHHHHHHHH-----hhhcccchhccccccccc
Q 004273 212 VHEIWEDYIKH----------YSLSIFSLRKFVWSFTR---LRDLKSAYETLQHMVA-----LAMMGKLYINRTSEGRLR 273 (764)
Q Consensus 212 a~~~~~~~~~~----------~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~~~~~~~ 273 (764)
...+...+... .+.+...+..+...+.. .|+++.|...|+++.+ ....|+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~--------- 231 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK--------- 231 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH---------
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccc---------
Confidence 22222111111 12234455555555444 8999999999999987 311222200
Q ss_pred ccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 004273 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353 (764)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 353 (764)
.......+|..+...+...|++++|...|+++.+.. |+..++..+...+...|++++|...++.
T Consensus 232 --------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 232 --------------LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred --------------cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 000002588889999999999999999999998864 4466778888888899999999999999
Q ss_pred HHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHh
Q 004273 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMR 422 (764)
Q Consensus 354 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 422 (764)
+.+.... +..++..+...|...|++++|...|+...... +...|..+...+...|++++|+..|+++.
T Consensus 296 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 296 ALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp HHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8876543 45556666666666666666666666665432 44455555555666666666666555544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-20 Score=200.60 Aligned_cols=250 Identities=14% Similarity=0.036 Sum_probs=185.9
Q ss_pred cCCHHHHHHHHHHHhh-----C----------C-CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHh
Q 004273 376 ALELDLAEALLDQISR-----C----------T-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF 439 (764)
Q Consensus 376 ~g~~~~A~~~~~~~~~-----~----------~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~ 439 (764)
.|++++|...|+++.. . + +..+|..+...+...|++++|...|+++.+ ..|+...+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~------- 273 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LFPRVNSY------- 273 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH-HCCCHHHH-------
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCccHHHH-------
Confidence 6788888888877766 2 1 445677788888899999999999988876 12333333
Q ss_pred cCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc--CCCCChhhHHHHHH
Q 004273 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGTPTYNTVLH 517 (764)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~ 517 (764)
..+...|...|++++|...++.. ..+.+...|..+..
T Consensus 274 -----------------------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 274 -----------------------------------------IYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312 (514)
T ss_dssp -----------------------------------------HHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred -----------------------------------------HHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence 33444555666666666666553 12335668888888
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004273 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597 (764)
Q Consensus 518 ~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 597 (764)
.+...|++++|+..|++..+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 8999999999999999988764 2356778888888889999999999998888753 3356778888899999999999
Q ss_pred HHHHHHHHHHCC-CCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 004273 598 ALNLLDLVSLEG-IPHD----VLLYNTILKKACE---KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669 (764)
Q Consensus 598 A~~~~~~m~~~~-~~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 669 (764)
|...++++.... -.++ ...|..+...+.. .|++++|...++++.+.. +.+..++..+...|.+.|++++|.
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHH
Confidence 999998887531 1122 3478888888888 899999999999988632 234566677778999999999999
Q ss_pred HHHHHHHH
Q 004273 670 EALQVLSM 677 (764)
Q Consensus 670 ~~~~~~~~ 677 (764)
+.+++...
T Consensus 470 ~~~~~a~~ 477 (514)
T 2gw1_A 470 TLFEESAD 477 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-19 Score=192.50 Aligned_cols=337 Identities=10% Similarity=-0.040 Sum_probs=274.2
Q ss_pred ccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH
Q 004273 43 TMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN 122 (764)
Q Consensus 43 ~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 122 (764)
.+...|+ ....+..+...+...|++++|+.+|+.+.... +.+...+..+..++...|+++.|.+.|+++.+.+ +.+.
T Consensus 18 ~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 94 (450)
T 2y4t_A 18 LYFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFT 94 (450)
T ss_dssp -----CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred cccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcH
Confidence 3444455 35566777888999999999999999998865 4567789999999999999999999999999985 5567
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-h---hhhHHH------------HHHHhccCCHHHHHHHHHHHHh
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-L---PVYNSF------------LGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~ 186 (764)
..+..+...|.+.|++++|...|+++.+. .|+ . ..+..+ ...+.+.|++++|+..|+.+.+
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999754 343 3 455555 3448899999999999999988
Q ss_pred cCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcc
Q 004273 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINR 266 (764)
Q Consensus 187 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 266 (764)
..+ .+..++..+...+...|++++|.+.++.+.+..+.+..++..+..+|...|++++|...|+++.+ ..|+..
T Consensus 172 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~--- 245 (450)
T 2y4t_A 172 VCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHK--- 245 (450)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH---
T ss_pred hCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChH---
Confidence 643 37788899999999999999999999999998888999999999999999999999999999987 455441
Q ss_pred cccccccccccCCCccCCcccchhhhHhhHHHH------------HHHHHccCCHHHHHHHHHHHHHCCCCCC-----cc
Q 004273 267 TSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV------------IHACGRTQNSGLAEQLMLQMQSLGLQPS-----SH 329 (764)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~ 329 (764)
..+..+ ...+.+.|++++|...|+++.+. .|+ ..
T Consensus 246 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~ 296 (450)
T 2y4t_A 246 ---------------------------RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVR 296 (450)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHH
Confidence 233333 88899999999999999999885 455 34
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHH---
Q 004273 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAA--- 404 (764)
Q Consensus 330 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~--- 404 (764)
.+..+...+.+.|++++|...++.+.+.... +..++..+..+|...|++++|...|+.+.... +...+..+..+
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 6788888999999999999999999886533 67889999999999999999999999997763 44455555422
Q ss_pred ---------HhcCC-----CHHHHHHHHHHH
Q 004273 405 ---------CDTMD-----KPERAIKIFAKM 421 (764)
Q Consensus 405 ---------~~~~g-----~~~~a~~l~~~m 421 (764)
|...| +.+++.+.|+++
T Consensus 376 ~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred hhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 33334 566777777763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.5e-19 Score=193.14 Aligned_cols=333 Identities=9% Similarity=-0.087 Sum_probs=232.5
Q ss_pred hHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004273 51 ISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 51 ~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 130 (764)
....+......+.+.|++++|+..|+++.... +.++..+..+..++...|+++.|++.++++.+.+ +.+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 45567777888999999999999999999876 5577789999999999999999999999999885 557788999999
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc------CCCCChhhHHHHHHHHH
Q 004273 131 ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR------MVGKNEVTYTELLKLAV 204 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~ 204 (764)
.|...|++++|...|+.+. . .|+ ..+..+..+...+....|...++.+... ...|+... +..+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~-~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~ 171 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS-L---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS----LASFF 171 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH----HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-c---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH----HHHHH
Confidence 9999999999999997542 2 233 2233344556667778899999998654 22333333 33344
Q ss_pred hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc--------CCHHHHHHHHHHHHHhhhcccchhcccccccccccc
Q 004273 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL--------RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
...+.+.+...+.......+........+...+... |+++.|..+|+++.+ ..|+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~--~~p~~~~~----------- 238 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS--ANTVDDPL----------- 238 (537)
T ss_dssp HTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHH-----------
T ss_pred HhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH--HCCCcchh-----------
Confidence 455555444433332222222233444444444433 478999999999887 34432100
Q ss_pred cCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004273 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 356 (764)
......+|..+...+...|++++|...|++..+. .|+..++..+...+...|++++|...++.+.+
T Consensus 239 ------------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 304 (537)
T 3fp2_A 239 ------------RENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVD 304 (537)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 0000136777788889999999999999999885 46667788888888899999999999999888
Q ss_pred CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004273 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 357 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
.... +..++..+...|...|++++|...|+...... +...|..+...+...|++++|...|++..+
T Consensus 305 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 305 LNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6544 56677777788888888888888887776532 556677777777777777777777776654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-19 Score=191.05 Aligned_cols=321 Identities=9% Similarity=-0.023 Sum_probs=259.7
Q ss_pred chHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004273 69 SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 69 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 148 (764)
..+...|..+.... +.+...+..+...+.+.|+++.|+.+|+.+.+.. +.+..++..+...|...|++++|...|+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444555555443 4556778899999999999999999999999874 557889999999999999999999999999
Q ss_pred hhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh----hhHHHHH------------HHHHhccChhHH
Q 004273 149 GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE----VTYTELL------------KLAVWQKNLSAV 212 (764)
Q Consensus 149 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll------------~~~~~~~~~~~a 212 (764)
.+.. +.+..++..+...|.+.|++++|...|+.+.+.. |+. .++..+. ..+...|++++|
T Consensus 87 l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 87 IQLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7654 3456789999999999999999999999999863 443 4555543 348899999999
Q ss_pred HHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhh
Q 004273 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
...++.+.+..+.+..++..+..+|.+.|++++|.+.|+++.+. .|+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~------------------------------ 210 (450)
T 2y4t_A 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDN------------------------------ 210 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSC------------------------------
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC------------------------------
Confidence 99999999988889999999999999999999999999999874 3433
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc-HHHH------------HHHHHhcCChhHHHHHHHHHHHCCC
Q 004273 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT-YDGF------------IRAIVSDRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~ 359 (764)
..+|..+...|...|++++|...|+++... .|+... +..+ ...+...|++++|...|+.+.+...
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 158999999999999999999999999875 455443 4333 6788999999999999999998543
Q ss_pred CCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-C-CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHh
Q 004273 360 KPQ----DSTIATLSVECSKALELDLAEALLDQISRC-T-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRT 431 (764)
Q Consensus 360 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t 431 (764)
. + ...+..+...+.+.|++++|...++.+... + +..+|..+..+|...|++++|...|++..+ ..|+...
T Consensus 289 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~~~~ 364 (450)
T 2y4t_A 289 S-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE-HNENDQQ 364 (450)
T ss_dssp S-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TSSSCHH
T ss_pred c-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCcchHH
Confidence 3 2 346788899999999999999999998653 2 678899999999999999999999999987 4455433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-18 Score=190.80 Aligned_cols=430 Identities=10% Similarity=-0.015 Sum_probs=259.7
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
...+..+...+.+.|+++.|++.|+++.+.+ +.++..+..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 3457778888889999999999999999875 5578889999999999999999999999987654 345678888999
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccC---CCCHHhHHHHHHHhhccCCH
Q 004273 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY---SLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 243 (764)
.+.+.|++++|+..|+.+ .. .|+.. ...+..+...+....+...++.+.+.. .+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999643 22 23322 122334455555677888888876531 11111122233334445555
Q ss_pred HHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHc--------cCCHHHHHHH
Q 004273 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR--------TQNSGLAEQL 315 (764)
Q Consensus 244 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--------~g~~~~a~~~ 315 (764)
+.+...+..... .+. .. ......+...+.. .|++++|..+
T Consensus 177 ~~~~~~~~~~~~----~~~-------------------------~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~ 224 (537)
T 3fp2_A 177 HLEVSSVNTSSN----YDT-------------------------AY---ALLSDALQRLYSATDEGYLVANDLLTKSTDM 224 (537)
T ss_dssp HHHHHTSCCCCS----SCS-------------------------SH---HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc----ccc-------------------------HH---HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 444333222111 110 00 0122223222222 2467888888
Q ss_pred HHHHHHCCCCCCc--------ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 004273 316 MLQMQSLGLQPSS--------HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387 (764)
Q Consensus 316 ~~~m~~~g~~p~~--------~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 387 (764)
|+++.+.. |+. .++..+...+...|++++|...++.+.+.. |+...+..+...|...|++++|...|+
T Consensus 225 ~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 225 YHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88887643 332 234444555666677777777777776643 234455555555555666666666655
Q ss_pred HHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHH
Q 004273 388 QISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465 (764)
Q Consensus 388 ~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (764)
.+.... +..+|..+...+...|++++|+..|++..+
T Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------------------------------ 338 (537)
T 3fp2_A 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS------------------------------------------ 338 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------------
T ss_pred HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------------------------------
Confidence 554321 334455555555555555555555554433
Q ss_pred HHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 004273 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545 (764)
Q Consensus 466 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~ 545 (764)
..+.+...|..+...+...|++++|+..|+++.+.. +.+..
T Consensus 339 --------------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 379 (537)
T 3fp2_A 339 --------------------------------------LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPE 379 (537)
T ss_dssp --------------------------------------HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTH
T ss_pred --------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 012233456666677777777777777777776653 23455
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCC
Q 004273 546 TYNIMIDCCSIIRCFKSASALVSMMVRDG-----FYPQTMTYTALIKILLDY----------GDFDEALNLLDLVSLEGI 610 (764)
Q Consensus 546 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~ 610 (764)
.+..+...+...|++++|...|+.+.+.. .......+..+...|.+. |++++|...++++.+..
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 458 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD- 458 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-
Confidence 66677777777777777777777766532 111222233445566666 77888888888777542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004273 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 611 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
+.+...+..+...|.+.|++++|.+.|++..+
T Consensus 459 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34566777777778888888888888887775
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-13 Score=155.77 Aligned_cols=552 Identities=10% Similarity=0.029 Sum_probs=272.7
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCC--CCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHcc
Q 004273 58 QIVDALCRGERSRASHLLLNLGHAHHS--LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG 135 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 135 (764)
.+.+|+..|.+.+|+++++++...+.+ -+...-+.++.+..+. +.....++.++.... ....+...+...
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISN 1062 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhC
Confidence 455566666677777777666633210 1223344444444444 445555555444321 122345556666
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHH
Q 004273 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
|.+++|..+|++... .....+.++. ..|++++|.++.++. -+..+|..+-+++...|++++|.+.
T Consensus 1063 glyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 677777666665421 1112222322 456666666666543 1355666666666666677666666
Q ss_pred HHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhh
Q 004273 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
|.+. .|...|..++.++.+.|++++|.+.|....+.. ++. ..
T Consensus 1128 YiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~-------------------------------~I 1169 (1630)
T 1xi4_A 1128 YIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RES-------------------------------YV 1169 (1630)
T ss_pred HHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccc-------------------------------cc
Confidence 6542 455666666666666677777766666655522 111 12
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHh
Q 004273 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSK 375 (764)
Q Consensus 296 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 375 (764)
.+.++.+|++.++++....+. + .|+...|..+-..|...|++++|..+|... ..|..+..+|.+
T Consensus 1170 dt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1170 ETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 1233 (1630)
T ss_pred cHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHH
Confidence 334666666666665422221 1 234445555666666666666666666663 356666666666
Q ss_pred cCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhh
Q 004273 376 ALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455 (764)
Q Consensus 376 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 455 (764)
.|+++.|.+.++... +..+|..+-.+|...|++..|......+. .+...+..++..+.+.|.+.++-..++.
T Consensus 1234 Lge~q~AIEaarKA~---n~~aWkev~~acve~~Ef~LA~~cgl~Ii----v~~deLeeli~yYe~~G~feEAI~LlE~- 1305 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKAN---STRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLEA- 1305 (1630)
T ss_pred hCCHHHHHHHHHHhC---CHHHHHHHHHHHhhhhHHHHHHHHHHhhh----cCHHHHHHHHHHHHHcCCHHHHHHHHHH-
Confidence 666666666666553 55666666666666666666655443321 2333333444444444444333222211
Q ss_pred hhHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHhc--cCcHHHHHHHHHhcCCCC-------ChhhHHHHHHHHHHcCCh
Q 004273 456 DSAKRINAIEMDMARNNIQH-SHISMKNLLKALGA--EGMIRELIQYFCDSKTPL-------GTPTYNTVLHSLVEAQES 525 (764)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~ 525 (764)
.. ++.+ ....|+.|...|++ -+++.++.+.|.....-| +...|.-++..|.+.|++
T Consensus 1306 ------------aL--~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~ 1371 (1630)
T 1xi4_A 1306 ------------AL--GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 1371 (1630)
T ss_pred ------------Hh--ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccH
Confidence 11 1111 12233333333333 334445555554432221 233455555555555665
Q ss_pred hHHHHHH-------------HHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004273 526 HRAMEIF-------------KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592 (764)
Q Consensus 526 ~~A~~l~-------------~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 592 (764)
+.|.... .+.... ..|...|...+.-|. +....++.-+.......+. ++..+..+.+.
T Consensus 1372 dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl--~~~P~~lndLl~~l~~rlD-----~~R~V~l~~~~ 1442 (1630)
T 1xi4_A 1372 DNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLD-----HTRAVNYFSKV 1442 (1630)
T ss_pred HHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHH--hhChHHHHHHHHHhhhcCC-----hHHHHHHHHHc
Confidence 5555211 111111 223333444443333 1111222222111111111 23344445555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH------------HHHHHHHHHCCCCCCHhhHHHHHH-HH
Q 004273 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI------------EFIIEQMHQNKVQPDPSTCHFVFS-GY 659 (764)
Q Consensus 593 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a------------~~~~~~m~~~~~~p~~~~~~~ll~-~~ 659 (764)
|++.-+..+++...... +..+-..|...+....+++.- ..+..++.++ +..-+..+.. .|
T Consensus 1443 ~~l~lik~yl~~vq~~n---~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ly 1515 (1630)
T 1xi4_A 1443 KQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLF 1515 (1630)
T ss_pred CChHHhHHHHHHHHHhc---chhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHHHH
Confidence 55555555555444221 222223333333333333211 1122222211 1122233333 55
Q ss_pred HhcCChHHHHHHHHHHHHhhhccccCchHhhHHHHHHhhhhccHHHHHHHHHHhhhcchhhHHHHhhhhhhhhhccC
Q 004273 660 VNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVG 736 (764)
Q Consensus 660 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~l~~~~~~~~~~ 736 (764)
.+.|+|..|.++.+.- + .+ ...+.....+++.+...+++.++-..+++-.++..|..+..+..|.
T Consensus 1516 ~~n~~~~~ai~l~k~d---~------l~---~dAm~~a~~S~d~e~~e~ll~~F~~~~~~E~f~a~Ly~cy~l~~pd 1580 (1630)
T 1xi4_A 1516 KGNNRWKQSVELCKKD---S------LY---KDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPD 1580 (1630)
T ss_pred HhcCcHHHHHHHHHhc---c------CH---HHHHHHHHHcCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCch
Confidence 6679999999988732 1 22 2245555677888888888888877777777777777766665553
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-16 Score=162.46 Aligned_cols=311 Identities=9% Similarity=-0.076 Sum_probs=239.3
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 132 (764)
..+..+...+...|++++|+..|+++.+.. +.++..+..+..++...|+++.|...++++.+.. +.+...+..+...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 455666788999999999999999998876 4567788889999999999999999999999874 44678899999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCC----ChhhhHHH------------HHHHhccCCHHHHHHHHHHHHhcCCCCChhhH
Q 004273 133 CKGGYLEEASNLIYFLGERYGIYP----ILPVYNSF------------LGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
...|++++|...|++..+. .| +...+..+ ...+...|++++|+..|+.+.+..+ .+...+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 157 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELR 157 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHH
Confidence 9999999999999998753 34 33344444 5788899999999999999988643 367788
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccc
Q 004273 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
..+...+...|++++|...++.+.+..+.+..++..+...+...|++++|...|++..+ ..|+..........+
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~---- 231 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQV---- 231 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHHHHHHH----
Confidence 88999999999999999999999998888999999999999999999999999999987 444431100000000
Q ss_pred cCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc-----cHHHHHHHHHhcCChhHHHHHH
Q 004273 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH-----TYDGFIRAIVSDRGLRNGMEVL 351 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-----t~~~li~~~~~~~~~~~a~~~~ 351 (764)
.. ......+...+.+.|++++|...+++..+.. |+.. .+..+...+...|++++|...+
T Consensus 232 ------------~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 232 ------------KK--LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp ------------HH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------HH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 00 0011133566788888888888888887753 3432 2334556777888888888888
Q ss_pred HHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 004273 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC 392 (764)
Q Consensus 352 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 392 (764)
+...+.... +..++..+...|...|++++|...|+.....
T Consensus 296 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 296 SEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888776432 5566777777777777777777777777654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-13 Score=155.04 Aligned_cols=555 Identities=8% Similarity=0.023 Sum_probs=311.5
Q ss_pred hHHHHHHHHhhcccchhhhhccccccchhhh------------hccccCCchhhhHHHH--------HHHHHHHHhcCCc
Q 004273 9 RFQLIADSFCKSKFHKHERRNVANKLELSRT------------LTTTMGLNEESISKAT--------QMQIVDALCRGER 68 (764)
Q Consensus 9 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~------------~~~~~~~~p~~~~~~~--------~~~i~~~~~~~~~ 68 (764)
..+.+...|...|.+.+|+ .+++++....+ ..+.++.++....... ..+...+...|.+
T Consensus 987 eVs~~vKaf~~aglp~Eai-eLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELI-ELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHH-HHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 4566778899999999999 77776632211 0001111111000000 1123345556777
Q ss_pred chHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004273 69 SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 69 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 148 (764)
++|..+|++... .....+.++. ..+++++|.++.++. -++.+|..+..++.+.|++++|++.|.+.
T Consensus 1066 EEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1066 EEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 777777776421 1112233332 445677777766644 24567778888888888888888887643
Q ss_pred hhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHH
Q 004273 149 GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIF 228 (764)
Q Consensus 149 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 228 (764)
-|...|..++..+.+.|++++|.+.|...++.. +++...+.+..+|++.++++....+. ..++..
T Consensus 1132 -------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI------~~~n~a 1196 (1630)
T 1xi4_A 1132 -------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI------NGPNNA 1196 (1630)
T ss_pred -------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH------hCCCHH
Confidence 245577778888888888888888887766653 33333334777777777777544442 234555
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCC
Q 004273 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 308 (764)
.|..+...|...|++++|..+|.... .|..+..++.+.|+
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~----------------------------------------ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVS----------------------------------------NFGRLASTLVHLGE 1236 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh----------------------------------------HHHHHHHHHHHhCC
Confidence 66677888888888888888888752 67788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004273 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388 (764)
Q Consensus 309 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 388 (764)
++.|.+.+++. -+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++.
T Consensus 1237 ~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1237 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888775 3567788888888888887777765543 333556677888888888888888888877
Q ss_pred HhhCC--CCcchHHHHHHHhcC--CCHHHHHHHHHHHhhccCC------CHHhHHHHHHHhcCCCCchhhchhhhhhhhH
Q 004273 389 ISRCT--NPKPFSAFLAACDTM--DKPERAIKIFAKMRQKLRP------DIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458 (764)
Q Consensus 389 ~~~~~--~~~~~~~li~~~~~~--g~~~~a~~l~~~m~~~~~p------~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 458 (764)
..... ....|+-|...|++. ++..+++++|..-. ++.| +...|.-+.-.|.+.+.++.|....-.-...
T Consensus 1306 aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri-ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~ 1384 (1630)
T 1xi4_A 1306 ALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV-NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 1384 (1630)
T ss_pred HhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHh
Confidence 75543 444566666666553 34555555555322 2222 2333444444444444443332111100000
Q ss_pred HHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHh-cCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 004273 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537 (764)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~ 537 (764)
..-+..+.+.. .-..+...|...+..|.... ..++.-+.. ..+ ..-++-.+..+.+.++..-+...+.....
T Consensus 1385 a~~~~~Fk~~i--~kv~n~elyykai~Fyl~~~--P~~lndLl~~l~~---rlD~~R~V~l~~~~~~l~lik~yl~~vq~ 1457 (1630)
T 1xi4_A 1385 AWKEGQFKDII--TKVANVELYYRAIQFYLEFK--PLLLNDLLMVLSP---RLDHTRAVNYFSKVKQLPLVKPYLRSVQN 1457 (1630)
T ss_pred hhhhHHHHHHh--cccccHHHHHHHHHHHHhhC--hHHHHHHHHHhhh---cCChHHHHHHHHHcCChHHhHHHHHHHHH
Confidence 00111111111 11234455555555554322 111111100 000 00112233333444444444444444333
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhH------------HHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHH
Q 004273 538 CGIPPNAATYNIMIDCCSIIRCFKS------------ASALVSMMVRDGFYPQTMTYTALI-KILLDYGDFDEALNLLDL 604 (764)
Q Consensus 538 ~g~~p~~~t~~~ll~~~~~~~~~~~------------a~~~~~~~~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~ 604 (764)
.+. ...=..+...|....+++. ...+-.++.++ +..-+..+. ..|.+.|++..|.+++.+
T Consensus 1458 ~n~---~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ly~~n~~~~~ai~l~k~ 1530 (1630)
T 1xi4_A 1458 HNN---KSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLFKGNNRWKQSVELCKK 1530 (1630)
T ss_pred hcc---hhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHHHHHhcCcHHHHHHHHHh
Confidence 221 1111122222222222211 12222222222 122233333 345566999999999987
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 004273 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671 (764)
Q Consensus 605 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 671 (764)
- | .|.-.|....++|+.+.+++++.-..+. -+...|...+-.|...=+.+.++++
T Consensus 1531 d---~------l~~dAm~~a~~S~d~e~~e~ll~~F~~~---~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1531 D---S------LYKDAMQYASESKDTELAEELLQWFLQE---EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred c---c------CHHHHHHHHHHcCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCCchHHHHH
Confidence 3 2 5666788899999999999999999864 4566787888888888888877664
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.3e-16 Score=159.38 Aligned_cols=305 Identities=8% Similarity=-0.036 Sum_probs=251.8
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
+..+..+...+...|+++.|...|+.+.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...|..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHH
Confidence 4567778888899999999999999999875 4567899999999999999999999999997653 235678999999
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCC--CChhhHHHH------------HHHHHhccChhHHHHHHHHHHccCCCCHHhHHH
Q 004273 167 ACAKLHSMVHANLCLDLMDSRMVG--KNEVTYTEL------------LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (764)
.+.+.|++++|...|+...+..+. .+...+..+ ...+...|++++|.+.++.+.+..+.+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999999886320 133344443 467889999999999999999988889999999
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHH
Q 004273 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLA 312 (764)
Q Consensus 233 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 312 (764)
+..++...|+++.|...++++.+ ..|+. ..+|..+...+...|++++|
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~------------------------------~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASK--LKSDN------------------------------TEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT--TCSCC------------------------------HHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999987 34443 15888999999999999999
Q ss_pred HHHHHHHHHCCCCCCcc-cHH------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCch----hHHHHHHHHHHh
Q 004273 313 EQLMLQMQSLGLQPSSH-TYD------------GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD----STIATLSVECSK 375 (764)
Q Consensus 313 ~~~~~~m~~~g~~p~~~-t~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~ 375 (764)
...|++..+.. |+.. ++. .+...+.+.|++++|...++.+.+.... +. ..+..+...|..
T Consensus 208 ~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~ 284 (359)
T 3ieg_A 208 LSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSK 284 (359)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHH
Confidence 99999998753 4432 222 2255688999999999999999986544 22 224457789999
Q ss_pred cCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHH
Q 004273 376 ALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIR 430 (764)
Q Consensus 376 ~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~ 430 (764)
.|++++|...++...... +..+|..+...|.+.|++++|...|++..+ ..|+..
T Consensus 285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-~~p~~~ 340 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE-HNENDQ 340 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCTTCH
T ss_pred ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCh
Confidence 999999999999987643 667889999999999999999999999987 445533
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-18 Score=187.85 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=128.7
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004273 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKT---CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585 (764)
Q Consensus 509 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l 585 (764)
..+||++|++|++.|+.++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||+.|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45999999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HhhHHHHHHH
Q 004273 586 IKILLDYGD-FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD------PSTCHFVFSG 658 (764)
Q Consensus 586 i~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~ 658 (764)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 478999999999999999999999999877655 344444444 3466665 4444556667
Q ss_pred HHhcC
Q 004273 659 YVNCG 663 (764)
Q Consensus 659 ~~~~g 663 (764)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 77766
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-16 Score=157.90 Aligned_cols=284 Identities=8% Similarity=-0.052 Sum_probs=148.7
Q ss_pred CCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004273 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 164 (764)
.+...+..+...+...|+++.|.++++.+.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...|..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHH
Confidence 334445555555555556666666665555543 2333444445555555566666666655554432 1233455555
Q ss_pred HHHHhccC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCH
Q 004273 165 LGACAKLH-SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 165 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
...+...| ++++|...|+...+... .+...|..+...+...|++++|.+.++.+.+..+.+...+..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 55555555 55666666655554421 13444555555555566666666666655555455555555566666666666
Q ss_pred HHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004273 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 244 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 323 (764)
+.|...|+++.+ ..|+. ...|..+...+...|++++|...|++..+..
T Consensus 176 ~~A~~~~~~al~--~~~~~------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 176 KLAERFFSQALS--IAPED------------------------------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHHT--TCTTC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCC------------------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 666666666555 22222 1355556666666666666666666555421
Q ss_pred --------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--
Q 004273 324 --------LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-- 393 (764)
Q Consensus 324 --------~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 393 (764)
...+..++..+...+...|++++|...++...+.... +...+..+...|.+.|++++|...|++.....
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 0112334555555555666666666666655554322 34445555555555555555555555554432
Q ss_pred CCcchHHHHHHH
Q 004273 394 NPKPFSAFLAAC 405 (764)
Q Consensus 394 ~~~~~~~li~~~ 405 (764)
+...+..+..++
T Consensus 303 ~~~~~~~l~~~~ 314 (330)
T 3hym_B 303 DTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 333344444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-15 Score=155.69 Aligned_cols=297 Identities=8% Similarity=-0.091 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 132 (764)
..+......+...|++++|+++|+++.+.. +.+...+..++.++...|+++.|..+++++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 345556777888999999999999998876 4556667778888888999999999999999874 45678899999999
Q ss_pred HccC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhH
Q 004273 133 CKGG-YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 133 ~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
...| ++++|...|++..+.. +.+...|..+...+...|++++|+..|+...+.... +..++..+...+...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 9999 9999999999987543 335668999999999999999999999999886433 45677778889999999999
Q ss_pred HHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhh
Q 004273 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
|.+.++...+..+.+..++..+...+...|++++|...|+++.+.......... +...
T Consensus 178 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------------------~~~~- 235 (330)
T 3hym_B 178 AERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT---------------------VDKW- 235 (330)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT---------------------TTTC-
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc---------------------ccHH-
Confidence 999999999988889999999999999999999999999999874321110000 0000
Q ss_pred hHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHH
Q 004273 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 371 (764)
..+|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..
T Consensus 236 -~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 312 (330)
T 3hym_B 236 -EPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGH 312 (330)
T ss_dssp -CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHH
Confidence 1488999999999999999999999998864 235667888999999999999999999999876543 5666677777
Q ss_pred HH-HhcCCH
Q 004273 372 EC-SKALEL 379 (764)
Q Consensus 372 ~~-~~~g~~ 379 (764)
++ ...|+.
T Consensus 313 ~~~~~~g~~ 321 (330)
T 3hym_B 313 CIEMYIGDS 321 (330)
T ss_dssp HHHTTTTC-
T ss_pred HHHHHhCch
Confidence 66 344544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-13 Score=148.63 Aligned_cols=284 Identities=8% Similarity=-0.029 Sum_probs=148.6
Q ss_pred hHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCchhHH
Q 004273 295 SFSDVIHACGR----TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGMEVLKIMQQNNLKPQDSTI 366 (764)
Q Consensus 295 ~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~ 366 (764)
.+..|...|.. .+++++|...|++..+.| +...+..+-..+.. .+++++|...|+...+.| +...+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44444444444 455555555555555543 33334444444443 455556666665555543 34444
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcchHHHHHHHhc----CCCHHHHHHHHHHHhh-ccCCCHHhHHHHHH
Q 004273 367 ATLSVECSK----ALELDLAEALLDQISRCTNPKPFSAFLAACDT----MDKPERAIKIFAKMRQ-KLRPDIRTYELLFS 437 (764)
Q Consensus 367 ~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~ 437 (764)
..|...|.. .++.++|...|+...+.+++..+..+...|.. .+++++|...|++..+ +. ..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~------- 256 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN---SI------- 256 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC---HH-------
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HH-------
Confidence 455555555 55666666666655555444555555555554 5566666666665544 21 00
Q ss_pred HhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhc----cCcHHHHHHHHHhcCCCCChhhHH
Q 004273 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA----EGMIRELIQYFCDSKTPLGTPTYN 513 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 513 (764)
.+..+...|.. .++.++|...|+......+...+.
T Consensus 257 -----------------------------------------a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~ 295 (490)
T 2xm6_A 257 -----------------------------------------AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQY 295 (490)
T ss_dssp -----------------------------------------HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHH
T ss_pred -----------------------------------------HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 11111122222 345555555555443333444555
Q ss_pred HHHHHHHHc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004273 514 TVLHSLVEA-----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR---CFKSASALVSMMVRDGFYPQTMTYTAL 585 (764)
Q Consensus 514 ~li~~~~~~-----~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~p~~~~~~~l 585 (764)
.+...|... ++.++|+..|++..+.| +...+..+-..|...| ++++|..+|++..+.| ++..+..|
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~L 369 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNL 369 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 555555554 56666666666666553 3344444444444433 5566666666666543 44555556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 004273 586 IKILLD----YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 586 i~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 644 (764)
...|.. .+++++|.+.|++..+.+ +...+..|...|.. .++.++|...|++..+.+
T Consensus 370 g~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 370 GNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 666655 566666666666665543 34555555555555 566666666666666543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-18 Score=184.28 Aligned_cols=123 Identities=19% Similarity=0.210 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004273 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVR---DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 617 (764)
.--..||+++|++||+.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33457999999999999999999999988875 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 004273 618 NTILKKACEKGR-IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663 (764)
Q Consensus 618 ~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 663 (764)
++||.++++.|+ .++|.++|++|.+.|+.||..+|+++++++.+.+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 999999999998 4789999999999999999999999998777654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-16 Score=160.95 Aligned_cols=291 Identities=8% Similarity=-0.118 Sum_probs=219.7
Q ss_pred HHhcCCcchHHH-HHHHhhhccC---CCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004273 62 ALCRGERSRASH-LLLNLGHAHH---SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 62 ~~~~~~~~~A~~-~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
+...|++++|+. .|++...... ..+...+..+...+.+.|+++.|...++++.+.. +.+..++..+...|...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445578888988 8887654431 1134567788888888999999999999998875 5567788888899999999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH---------------HHHH
Q 004273 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE---------------LLKL 202 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---------------ll~~ 202 (764)
+++|...|+++.+.. +.+..++..+...|...|++++|+..|+.+....+. +...+.. .+..
T Consensus 114 ~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999887653 346678888899999999999999999998876433 2222211 2344
Q ss_pred HHhccChhHHHHHHHHHHccCCC--CHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCC
Q 004273 203 AVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
+...|++++|...++.+.+..+. +..++..+..+|...|++++|...|+++.+ ..|+.
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~------------------ 250 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPND------------------ 250 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC------------------
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCC------------------
Confidence 44889999999999999886655 788999999999999999999999999887 34443
Q ss_pred ccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004273 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 360 (764)
..+|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...|+.+.+....
T Consensus 251 ------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 251 ------------YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 1588889999999999999999999988753 235667888889999999999999999988774322
Q ss_pred C----------chhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004273 361 P----------QDSTIATLSVECSKALELDLAEALLDQI 389 (764)
Q Consensus 361 ~----------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 389 (764)
. ...++..+..+|...|+.++|..++...
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1 1567889999999999999998887643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.7e-16 Score=159.56 Aligned_cols=314 Identities=9% Similarity=-0.094 Sum_probs=227.0
Q ss_pred HHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHH-HHHHHHHcCc-cc--cHHHHHHHHHHHHccCC
Q 004273 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVME-TWRMMEEKEI-GL--NNKCYLLMMQALCKGGY 137 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~ 137 (764)
......|+.+...|+.+...+ +. . +...|+++.|.+ .+++..+... .| +...+..+...+.+.|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~--~~--~-------~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (368)
T 1fch_A 11 ESDVDFWDKLQAELEEMAKRD--AE--A-------HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGD 79 (368)
T ss_dssp ----------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTC
T ss_pred ccCcccHHHHHHHHHHHHcCC--ch--h-------hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCC
Confidence 334567788888888886654 22 1 223477888888 8876665421 11 34567888999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 004273 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
+++|...|+++.+.. +.+..+|..+...+.+.|++++|+..|+.+.+..+ .+..++..+...+...|++++|.+.++
T Consensus 80 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 80 LPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp HHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999997643 44667899999999999999999999999988753 377888999999999999999999999
Q ss_pred HHHccCCCCHHhHHHH---------------HHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCcc
Q 004273 218 DYIKHYSLSIFSLRKF---------------VWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282 (764)
Q Consensus 218 ~~~~~~~~~~~~~~~l---------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (764)
.+.+..+.+...+..+ +..+...|++++|...|+++.+ ..|+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~------------------ 216 (368)
T 1fch_A 157 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR--LDPTSID------------------ 216 (368)
T ss_dssp HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH--HSTTSCC------------------
T ss_pred HHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH--hCcCccc------------------
Confidence 9998665555554322 3334489999999999999988 4454100
Q ss_pred CCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 004273 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362 (764)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 362 (764)
..+|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...|+.+.+.... +
T Consensus 217 ----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~ 284 (368)
T 1fch_A 217 ----------PDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-Y 284 (368)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-c
Confidence 1588899999999999999999999998763 234678889999999999999999999999887543 5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--C-----------CcchHHHHHHHhcCCCHHHHHHHHHHH
Q 004273 363 DSTIATLSVECSKALELDLAEALLDQISRCT--N-----------PKPFSAFLAACDTMDKPERAIKIFAKM 421 (764)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~-----------~~~~~~li~~~~~~g~~~~a~~l~~~m 421 (764)
..++..+...|.+.|++++|...|+...... + ..+|..+..+|...|++++|..++.+-
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 7788899999999999999999999876532 2 567999999999999999999887743
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.2e-14 Score=152.57 Aligned_cols=163 Identities=9% Similarity=0.013 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004273 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN-A-ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~-~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
.|..++..+.+.|++++|..+|+++.+. .|+ . ..|......+.+.|++++|..+|+...+... .+...|......
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~ 399 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHH
Confidence 4444444555555666666666665553 333 1 3555555555556666666666666655421 112222211111
Q ss_pred -HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC--HhhHHHHHHHHHhcCC
Q 004273 589 -LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK-VQPD--PSTCHFVFSGYVNCGF 664 (764)
Q Consensus 589 -~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~ 664 (764)
+...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 224666677777766665431 2245666666666666677777777777666542 1221 2245555555666677
Q ss_pred hHHHHHHHHHHHH
Q 004273 665 HNSAMEALQVLSM 677 (764)
Q Consensus 665 ~~~a~~~~~~~~~ 677 (764)
.+.+..+.++...
T Consensus 479 ~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 479 LASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766666665543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-13 Score=142.30 Aligned_cols=352 Identities=9% Similarity=-0.001 Sum_probs=282.2
Q ss_pred CCHHhHHHHHHHhhc----cCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHH
Q 004273 225 LSIFSLRKFVWSFTR----LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 225 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
.++..+..+...|.. .++.+.|...|++..+.| +. ..+..|.
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~-------------------------------~a~~~Lg 82 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YT-------------------------------PAEYVLG 82 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-------------------------------HHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CH-------------------------------HHHHHHH
Confidence 355566666666666 788999999999887742 11 3677788
Q ss_pred HHHHc----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCchhHHHHHHHH
Q 004273 301 HACGR----TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 301 ~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 372 (764)
..|.. .+++++|.+.|++..+.| +...+..|-..+.. .+++++|...|+...+.| +...+..|...
T Consensus 83 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 156 (490)
T 2xm6_A 83 LRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDA 156 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 88888 899999999999998865 55666677777777 789999999999998876 45667778888
Q ss_pred HHh----cCCHHHHHHHHHHHhhCCCCcchHHHHHHHhc----CCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCC
Q 004273 373 CSK----ALELDLAEALLDQISRCTNPKPFSAFLAACDT----MDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVN 443 (764)
Q Consensus 373 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~ 443 (764)
|.. .++.++|...|+...+.+++..+..+...|.. .+++++|+..|++..+ + +.
T Consensus 157 y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~-------------- 219 (490)
T 2xm6_A 157 YFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DE-------------- 219 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH--------------
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CH--------------
Confidence 887 78999999999998887788888888888887 8999999999988765 3 11
Q ss_pred CchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhc----cCcHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA----EGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519 (764)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~li~~~ 519 (764)
..+..+...|.. .+++++|...|++.....+...+..+...|
T Consensus 220 ----------------------------------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 220 ----------------------------------LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp ----------------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 122233344443 678899999998865556677888888888
Q ss_pred HH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004273 520 VE----AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII-----RCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590 (764)
Q Consensus 520 ~~----~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 590 (764)
.. .++.++|+..|++..+.| +...+..+-..|... +++++|...|++..+.| +...+..|...|.
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 88 899999999999998875 456666777777776 89999999999999875 4566777888888
Q ss_pred hcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--
Q 004273 591 DYG---DFDEALNLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN-- 661 (764)
Q Consensus 591 ~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-- 661 (764)
+.| +.++|.++|++..+.| +...+..|...|.. .++.++|...|++..+.| +...+..|-..|.+
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred hCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCC
Confidence 766 7899999999998764 67888889999988 899999999999999865 46677777778887
Q ss_pred --cCChHHHHHHHHHHHHhh
Q 004273 662 --CGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 662 --~g~~~~a~~~~~~~~~~~ 679 (764)
.++.++|.+.+++....+
T Consensus 414 g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 899999999999877665
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-15 Score=152.35 Aligned_cols=238 Identities=10% Similarity=-0.004 Sum_probs=86.2
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHH
Q 004273 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 178 (764)
+.|+.++|.++++++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 345566666666665 22236667777777777777777766532 34446666666666677777777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhh
Q 004273 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM 258 (764)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 258 (764)
..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|...|..+.
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~---- 149 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---- 149 (449)
T ss_dssp -----------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHTT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----
Confidence 766555543 3445666666667777777666665553 3555677777777777777777777777652
Q ss_pred cccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004273 259 MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338 (764)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 338 (764)
.|..++.++.+.|++++|.+.+.++ .+..+|..++.+|
T Consensus 150 ------------------------------------n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aC 187 (449)
T 1b89_A 150 ------------------------------------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 187 (449)
T ss_dssp ------------------------------------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH
T ss_pred ------------------------------------hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHH
Confidence 6778888888888888888888877 2677888888888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcC
Q 004273 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTM 408 (764)
Q Consensus 339 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~ 408 (764)
+..|+++.|...... +...+.-...++..|.+.|.+++|..+++...... ....|+-|-..|++-
T Consensus 188 v~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 188 VDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 888888888554432 22233334467777888888888877777766542 334455555555554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-15 Score=157.71 Aligned_cols=267 Identities=9% Similarity=-0.090 Sum_probs=154.3
Q ss_pred CcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004273 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 165 (764)
+...+..+...+.+.|+++.|+++|+++.+.. +.+..+|..+...|...|++++|+..|+++.+.. +.+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 33445555666666666666666666666553 3355566666666666666666666666665432 22345566666
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCC---------ChhhHHHHHHHHHhccChhHHHHHHHHHHccCCC--CHHhHHHHH
Q 004273 166 GACAKLHSMVHANLCLDLMDSRMVGK---------NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFV 234 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p---------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li 234 (764)
..|.+.|++++|+..|+.+.+..+.. ....+..+...+...|++++|.+.++.+.+..+. +..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 66666666666666666665532110 0111223355566666666666666666665444 566666666
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHH
Q 004273 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 314 (764)
.+|...|++++|...|+++.+ ..|+. ..+|+.+...|...|++++|..
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~--~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALT--VRPED------------------------------YSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHHcCCHHHHHH
Confidence 666677777777777776665 23332 1466666667777777777777
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------CchhHHHHHHHHHHhcCCHHHHH
Q 004273 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK-----------PQDSTIATLSVECSKALELDLAE 383 (764)
Q Consensus 315 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~ 383 (764)
.|++..+.. +.+..++..+..++...|++++|...|+++.+.... .+..++..+..++...|+.+.+.
T Consensus 269 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 269 AYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 777666542 123555666666666777777777777666553211 12456677777777778777777
Q ss_pred HHHHH
Q 004273 384 ALLDQ 388 (764)
Q Consensus 384 ~~~~~ 388 (764)
.+...
T Consensus 348 ~~~~~ 352 (365)
T 4eqf_A 348 AANLG 352 (365)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 66554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-13 Score=149.00 Aligned_cols=165 Identities=10% Similarity=0.011 Sum_probs=124.3
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHhc-CCCCC-h-hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004273 476 SHISMKNLLKALGAEGMIRELIQYFCDS-KTPLG-T-PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552 (764)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~-~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 552 (764)
+...+..++..+.+.|++++|..+|++. ...|+ . ..|...+..+.+.|+.++|..+|++..+.. +.+...|.....
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~ 398 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL 398 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHH
Confidence 4556667777888889999999998874 23343 2 478888888888999999999999988753 222333332222
Q ss_pred -HHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcC
Q 004273 553 -CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG-IPHD--VLLYNTILKKACEKG 628 (764)
Q Consensus 553 -~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g 628 (764)
.+...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2335799999999999888753 2357888899999999999999999999988753 2332 458888888888899
Q ss_pred CHHHHHHHHHHHHH
Q 004273 629 RIDVIEFIIEQMHQ 642 (764)
Q Consensus 629 ~~~~a~~~~~~m~~ 642 (764)
+.+.+..+.+++.+
T Consensus 478 ~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 478 DLASILKVEKRRFT 491 (530)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999886
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=158.06 Aligned_cols=265 Identities=10% Similarity=-0.074 Sum_probs=173.4
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+...+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+...|.+.|++++|+..|+.+.+..+ .+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 34456667777777777777777777776543 33556777777777777777777777777776532 2466777777
Q ss_pred HHHHhccChhHHHHHHHHHHccCCCCHHhH----------HHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccc
Q 004273 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSL----------RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 270 (764)
..+...|++++|...++.+.+..+.+...+ ..+...+...|++++|...|+++.+. .|+...
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~------ 212 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMID------ 212 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCC------
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccC------
Confidence 777777777777777777776433333322 33466777777777777777777763 343100
Q ss_pred cccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 004273 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350 (764)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~ 350 (764)
..+|..+...+...|++++|.+.|++..+.. +.+..+|..+..++...|++++|...
T Consensus 213 ----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 213 ----------------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEA 269 (365)
T ss_dssp ----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1467777777777777777777777777653 22455677777777777777777777
Q ss_pred HHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------------CCcchHHHHHHHhcCCCHHHHHH
Q 004273 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--------------NPKPFSAFLAACDTMDKPERAIK 416 (764)
Q Consensus 351 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~~li~~~~~~g~~~~a~~ 416 (764)
|+.+.+.... +..++..+..+|.+.|++++|...|++..... +...|..+..++...|+.+.+..
T Consensus 270 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 270 YTRALEIQPG-FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 7777765433 45667777777777777777777777765421 14557777777777777777766
Q ss_pred HHHH
Q 004273 417 IFAK 420 (764)
Q Consensus 417 l~~~ 420 (764)
+..+
T Consensus 349 ~~~~ 352 (365)
T 4eqf_A 349 ANLG 352 (365)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-15 Score=151.85 Aligned_cols=281 Identities=12% Similarity=0.118 Sum_probs=131.5
Q ss_pred hcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHH
Q 004273 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143 (764)
Q Consensus 64 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 143 (764)
+.|+.++|.++++++. ++..|..+..++.+.|++++|++.|.+ .+|...|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5677899999998882 234888999999999999999999965 2577789999999999999999999
Q ss_pred HHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccC
Q 004273 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223 (764)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 223 (764)
+++...+. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 88766542 3556788999999999999999988884 377789999999999999999999999976
Q ss_pred CCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHH
Q 004273 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303 (764)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 303 (764)
..|..++.++.+.|+++.|.+.+.++. +. .+|..++.+|
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~-------------------------------~~Wk~v~~aC 187 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKAN------ST-------------------------------RTWKEVCFAC 187 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CH-------------------------------HHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHcC------Cc-------------------------------hhHHHHHHHH
Confidence 489999999999999999999999882 11 5899999999
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhc--CCHHH
Q 004273 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA--LELDL 381 (764)
Q Consensus 304 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~ 381 (764)
...|+++.|......+. +.|+. ...++..|.+.|.++++..+++...... .-....++-|.-.|++- +++.+
T Consensus 188 v~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~e 261 (449)
T 1b89_A 188 VDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 261 (449)
T ss_dssp HHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999966555422 23333 5568889999999999999999988765 33566677776677664 44555
Q ss_pred HHHHHHHHhhCC-------CCcchHHHHHHHhcCCCHHHHHHH
Q 004273 382 AEALLDQISRCT-------NPKPFSAFLAACDTMDKPERAIKI 417 (764)
Q Consensus 382 A~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~l 417 (764)
..++|..-...+ +...|..++..|.+.++++.|...
T Consensus 262 hl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 262 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 555554321111 788899999999999999988774
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-15 Score=149.84 Aligned_cols=269 Identities=6% Similarity=-0.110 Sum_probs=211.0
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH
Q 004273 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (764)
|......+......+...|++++|+..|+++.+.. +.+...+..+..++...|+++.|.+.++++.+.. +.+...+..
T Consensus 17 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 94 (327)
T 3cv0_A 17 PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA 94 (327)
T ss_dssp GGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHH
Confidence 43445556677888999999999999999998875 4566778888899999999999999999999875 457788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH--------------HH-HHhccCCHHHHHHHHHHHHhcCCCCC
Q 004273 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF--------------LG-ACAKLHSMVHANLCLDLMDSRMVGKN 192 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~ 192 (764)
+...|...|++++|.+.|+++.+..+ .+...+..+ .. .+...|++++|...++.+.+.... +
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 171 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-D 171 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTST--TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-C
Confidence 99999999999999999999876432 222233333 22 377889999999999999876433 6
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccc
Q 004273 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272 (764)
Q Consensus 193 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 272 (764)
..++..+...+...|++++|.+.++.+.+..+.+..++..+..++...|++++|...|+++.+ ..|+.
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~---------- 239 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGY---------- 239 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCC----------
Confidence 778888888999999999999999999988888889999999999999999999999999887 34433
Q ss_pred cccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----------CcccHHHHHHHHHhc
Q 004273 273 RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP-----------SSHTYDGFIRAIVSD 341 (764)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------~~~t~~~li~~~~~~ 341 (764)
..+|..+...+...|++++|.+.|++..+..... +..++..+..++...
T Consensus 240 --------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 240 --------------------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred --------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 1478888999999999999999999887643211 244566666666677
Q ss_pred CChhHHHHHHHH
Q 004273 342 RGLRNGMEVLKI 353 (764)
Q Consensus 342 ~~~~~a~~~~~~ 353 (764)
|++++|..+++.
T Consensus 300 g~~~~A~~~~~~ 311 (327)
T 3cv0_A 300 NRPDLVELTYAQ 311 (327)
T ss_dssp TCHHHHHHHTTC
T ss_pred CCHHHHHHHHHH
Confidence 777776666543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-14 Score=146.92 Aligned_cols=265 Identities=6% Similarity=-0.127 Sum_probs=181.6
Q ss_pred CcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004273 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 165 (764)
+...+..+...+...|+++.|..+|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHH
Confidence 34556777888888999999999999998875 4577788889999999999999999999987653 34566888899
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHH--------------HH-HHHhccChhHHHHHHHHHHccCCCCHHhH
Q 004273 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL--------------LK-LAVWQKNLSAVHEIWEDYIKHYSLSIFSL 230 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 230 (764)
..+...|++++|+..++.+...... +...+..+ .. .+...|++++|.+.++.+.+..+.+...+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 175 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Confidence 9999999999999999998876322 22233222 11 25566777777777777776666677777
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHH
Q 004273 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310 (764)
Q Consensus 231 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 310 (764)
..+...|...|++++|...++++.+. .|+. ..+|..+...+...|+++
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~------------------------------~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVEL--RPDD------------------------------AQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCc------------------------------HHHHHHHHHHHHHcCCHH
Confidence 77777777777777777777777662 3332 136667777777777777
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----------chhHHHHHHHHHHhcCCH
Q 004273 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP-----------QDSTIATLSVECSKALEL 379 (764)
Q Consensus 311 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~ 379 (764)
+|...|++..+.. +.+..++..+...+...|++++|...++.+.+..... +..++..+..+|.+.|+.
T Consensus 224 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 224 EALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 7777777766543 2234556666666667777777777776666543221 234444555555555555
Q ss_pred HHHHHHHH
Q 004273 380 DLAEALLD 387 (764)
Q Consensus 380 ~~A~~~~~ 387 (764)
++|..+++
T Consensus 303 ~~A~~~~~ 310 (327)
T 3cv0_A 303 DLVELTYA 310 (327)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 55555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-14 Score=142.61 Aligned_cols=254 Identities=10% Similarity=-0.008 Sum_probs=189.5
Q ss_pred HHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHH
Q 004273 14 ADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHI 93 (764)
Q Consensus 14 ~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 93 (764)
+......|++++|+ ..++ ......|++.......+.++|...|+++.|+..++.. .+|+..++..+
T Consensus 6 ~~~~~~~g~y~~ai-~~~~---------~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~l 71 (291)
T 3mkr_A 6 VKNAFYIGSYQQCI-NEAQ---------RVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMF 71 (291)
T ss_dssp HHHHHHTTCHHHHH-HHHH---------HSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHH---------hcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHH
Confidence 45567788899888 3333 3355667765555455678899999999999876542 24566678888
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC
Q 004273 94 LNYCARSPDPLFVMETWRMMEEKEIGL-NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 172 (764)
...+...++.+.|++.++++...+..| +...+..+...|...|++++|++.+++ +.+...+..+...|.+.|
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g 144 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLD 144 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCC
Confidence 888888899999999999998876434 566677777889999999999998875 356778888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHH---HHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHH
Q 004273 173 SMVHANLCLDLMDSRMVGKNEVTYT---ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET 249 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 249 (764)
++++|.+.|+.+.+.. |+..... ..+..+...|++++|..+|+++.+..+.++..++.+..++.+.|++++|...
T Consensus 145 ~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 145 RLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998863 5543211 1223333457788888888888887778888888888888888888888888
Q ss_pred HHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHH-HHHHHHHHHHC
Q 004273 250 LQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL-AEQLMLQMQSL 322 (764)
Q Consensus 250 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 322 (764)
|+++.+ ..|+.+ .++..++..+...|+.++ +.++++++.+.
T Consensus 223 l~~al~--~~p~~~------------------------------~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 223 LQEALD--KDSGHP------------------------------ETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHH--HCTTCH------------------------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHH--hCCCCH------------------------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 888877 445441 477777878888888765 56777777764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-14 Score=140.07 Aligned_cols=253 Identities=8% Similarity=-0.054 Sum_probs=133.3
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCc--chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGA--DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 136 (764)
++..-..|++..|+..++...... |+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 445556666666666666554432 222 2334455666666666666654433 1 2445556666666666666
Q ss_pred CHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHH
Q 004273 137 YLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
+.++|++.++++... +..| +...+..+...+.+.|++++|++.|+. ..+...+..+...+.+.|++++|.+.
T Consensus 80 ~~~~A~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 666666666665432 2223 333444555666666666666666655 23455555555666666666666666
Q ss_pred HHHHHccCCCCHHh--HHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhH
Q 004273 216 WEDYIKHYSLSIFS--LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293 (764)
Q Consensus 216 ~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (764)
++.+.+..+.+... ...++..+...|++++|..+|+++.+. .|+. .
T Consensus 153 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~------------------------------~ 200 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPT------------------------------L 200 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCC------------------------------H
T ss_pred HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCc------------------------------H
Confidence 66655543222211 111223333345566666666665552 3322 1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhH-HHHHHHHHHHC
Q 004273 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN-GMEVLKIMQQN 357 (764)
Q Consensus 294 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~-a~~~~~~m~~~ 357 (764)
..|+.+..++.+.|++++|...|++..+.. +-+..++..++..+...|+..+ +.++++++.+.
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 355555556666666666666666655432 1133445555555555555543 34555555544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-12 Score=140.32 Aligned_cols=138 Identities=8% Similarity=-0.079 Sum_probs=75.7
Q ss_pred HHHHHHHHhc--CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHccCChhHHHHHHH
Q 004273 494 RELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA--TYNIMID-CCSIIRCFKSASALVS 568 (764)
Q Consensus 494 ~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-~~~~~~~~~~a~~~~~ 568 (764)
+.|...|+.. ..+.+...+..+...|...|++++|+..|++..+....|... .+..+.. .....|+.++|...|+
T Consensus 317 ~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ 396 (472)
T 4g1t_A 317 GHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI 396 (472)
T ss_dssp HHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444444432 123345678888888889999999999998888764332221 1222221 2346688888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004273 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643 (764)
Q Consensus 569 ~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 643 (764)
+..+. .|+...... ..+.+.++++...... +.+..+|..|...|...|+.++|++.|++.++.
T Consensus 397 kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 397 EGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88774 354332222 2233444555544332 345667888888888888888888888888764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-12 Score=138.51 Aligned_cols=270 Identities=9% Similarity=-0.084 Sum_probs=168.2
Q ss_pred CCcchHHHHHHHhhCCCChhHHHHHHHHHHHc-----C---ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc---C
Q 004273 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEK-----E---IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY---G 153 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~ 153 (764)
.....|+.+...+...|++++|++.|++..+. + .+....+|+.+..+|...|++++|...+++..+-. .
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34556888888888889999999998887652 1 12234578888889999999999998888764321 1
Q ss_pred --CCC-ChhhhHHHHHHHhc--cCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHH---HHhccChhHHHHHHHHHHccCC
Q 004273 154 --IYP-ILPVYNSFLGACAK--LHSMVHANLCLDLMDSRMVGKN-EVTYTELLKL---AVWQKNLSAVHEIWEDYIKHYS 224 (764)
Q Consensus 154 --~~~-~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~ 224 (764)
..+ ...++..+..++.+ .+++++|+..|+...+. .|+ ...+..+..+ +...++.++|.+.+++..+..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 111 12355555555544 35788999999988875 344 3344443333 3345677888888888887777
Q ss_pred CCHHhHHHHHHHhhc----cCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHH
Q 004273 225 LSIFSLRKFVWSFTR----LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 225 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
.+..++..+...+.. .++.+.|.+.+++..+ ..|+. ..++..+.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~--~~~~~------------------------------~~~~~~lg 254 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE--KAPGV------------------------------TDVLRSAA 254 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHH--HCSSC------------------------------HHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--hCccH------------------------------HHHHHHHH
Confidence 777777776655543 4577888888888876 44443 14788888
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhc-------------------CChhHHHHHHHHHHHCCCC
Q 004273 301 HACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSD-------------------RGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 301 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~-------------------~~~~~a~~~~~~m~~~~~~ 360 (764)
..|...|++++|...|++..+. .|+. .++..+...+... +.++.|...++...+.+..
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 332 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN 332 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc
Confidence 9999999999999999998875 3443 3444444433221 1233444444444443322
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004273 361 PQDSTIATLSVECSKALELDLAEALLDQISR 391 (764)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 391 (764)
+...+..+...|...|++++|...|++...
T Consensus 333 -~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 333 -LFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp -TCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 233344455555555555555555555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=9e-13 Score=130.33 Aligned_cols=248 Identities=11% Similarity=-0.107 Sum_probs=127.7
Q ss_pred hCCCChhHHHHHHHHHHHcCc---cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCH
Q 004273 98 ARSPDPLFVMETWRMMEEKEI---GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM 174 (764)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 174 (764)
...++++.|++.++++.+... +.+..++..+...|...|++++|...|++..+.. +.+..+|..+...|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCH
Confidence 344566666666666665421 1234455666666666666666666666665432 22344555566666666666
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004273 175 VHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 175 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
++|+..|+...+. .+.+..++..+..+|...|++++|...|+++.
T Consensus 94 ~~A~~~~~~al~~-----------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 138 (275)
T 1xnf_A 94 DAAYEAFDSVLEL-----------------------------------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 138 (275)
T ss_dssp HHHHHHHHHHHHH-----------------------------------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----------------------------------CccccHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6666666655553 33334444444455555555555555555555
Q ss_pred HhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 004273 255 ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334 (764)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 334 (764)
+ ..|+. ..+...+..+...|++++|...+.+..... |+......+
T Consensus 139 ~--~~~~~-------------------------------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 183 (275)
T 1xnf_A 139 Q--DDPND-------------------------------PFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWNI 183 (275)
T ss_dssp H--HCTTC-------------------------------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHHH
T ss_pred H--hCCCC-------------------------------hHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHHHH
Confidence 4 23332 111122222334455566666665554432 222222234
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCH
Q 004273 335 IRAIVSDRGLRNGMEVLKIMQQNNLKP---QDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411 (764)
Q Consensus 335 i~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 411 (764)
...+...++.++|...+....+..... +..++..+...|.+.|++++|...|+..... ++..+.....++...|++
T Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~l~~~ 262 (275)
T 1xnf_A 184 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN-NVHNFVEHRYALLELSLL 262 (275)
T ss_dssp HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHH
Confidence 444455555555555555554432210 1345556666666677777777777766665 444455555566666666
Q ss_pred HHHHHHH
Q 004273 412 ERAIKIF 418 (764)
Q Consensus 412 ~~a~~l~ 418 (764)
++|++.+
T Consensus 263 ~~a~~~~ 269 (275)
T 1xnf_A 263 GQDQDDL 269 (275)
T ss_dssp HHC----
T ss_pred HhhHHHH
Confidence 6665544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=7.7e-12 Score=121.77 Aligned_cols=211 Identities=12% Similarity=0.031 Sum_probs=181.9
Q ss_pred CchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHH
Q 004273 46 LNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCY 125 (764)
Q Consensus 46 ~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 125 (764)
..|+.....+..+...+...|++++|+..|+++.... +.+...+..+...+...|+++.|.+.++++.+.. +.+...+
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 108 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVL 108 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHH
Confidence 3455556777788888999999999999999998875 4566778889999999999999999999999875 4577889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 004273 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV 204 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 204 (764)
..+...|...|++++|.++|+++.+ .+..| +...+..+...+.+.|++++|...|+...+... .+..++..+...+.
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHH
Confidence 9999999999999999999999975 22334 456788899999999999999999999988643 35778888999999
Q ss_pred hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
..|++++|...++.+.+..+.+...+..+...+.+.|+.+.|.+.++++.+ ..|+.
T Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~ 242 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGS 242 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTS
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCC
Confidence 999999999999999998888899999999999999999999999999988 44544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.5e-12 Score=123.83 Aligned_cols=190 Identities=8% Similarity=-0.086 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCcc--cc----HHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIG--LN----NKCYL 126 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 126 (764)
..+..+...+...|++++|+..|++..+.. .+...+..+..++...|+++.|.+.+++..+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344455566667777777777777776665 55666666667777777777777777776654311 11 45666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 004273 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
.+...|...|++++|...|++..+. .|+ ...+.+.|++++|...++.+....+ .+...+..+...+...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~---~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE---HRT-------ADILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCC-------HHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc---Cch-------hHHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 6666777777777777777766543 233 1234445666666666666655421 1334455555555666
Q ss_pred cChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
|++++|...++...+..+.+..++..+..+|...|++++|...|++..+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666666666666655555555666666666666666666666666555
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-12 Score=124.22 Aligned_cols=227 Identities=11% Similarity=-0.075 Sum_probs=177.5
Q ss_pred chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC-CCC----hhhhH
Q 004273 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGI-YPI----LPVYN 162 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~ 162 (764)
..+..+...+...|+++.|.+.|+++.+.. .+...+..+...|...|++++|...|++..+..+- .++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 457778888888999999999999998887 77888889999999999999999999887654311 111 46788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCC
Q 004273 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.+...+.+.|++++|...|+...+. .|+. ..+...|++++|...++.+.+..+.+...+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 8888999999999999999998875 3443 335566788888888888887777777888888888888888
Q ss_pred HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 243 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
+++|...|+++.+ ..|+. ...|..+...+...|++++|...|++..+.
T Consensus 155 ~~~A~~~~~~a~~--~~~~~------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 155 WPNAVKAYTEMIK--RAPED------------------------------ARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCccc------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888888888877 33433 147788888888888888888888888775
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004273 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 323 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~ 358 (764)
. +.+..++..+...+...|++++|...++...+..
T Consensus 203 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 203 D-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 3 2245667777778888888888888888876643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-12 Score=121.10 Aligned_cols=196 Identities=8% Similarity=-0.111 Sum_probs=120.8
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhh
Q 004273 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
..+..+...+.+.|++++|+..|+...+..+. +...+..+...+...|++++|...++...+..|.+...+..+..++.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34444444444444444444444444443211 33344444444444455555555555444444445555555555566
Q ss_pred cc-----------CCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccC
Q 004273 239 RL-----------RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307 (764)
Q Consensus 239 ~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 307 (764)
.. |++++|+..|++..+ ..|+. ...|..+...+...|
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~------------------------------~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAER--VNPRY------------------------------APLHLQRGLVYALLG 132 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTT
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHH--hCccc------------------------------HHHHHHHHHHHHHcC
Confidence 66 999999999999988 55554 157888889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 004273 308 NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387 (764)
Q Consensus 308 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 387 (764)
++++|+..|++..+.. .+...+..+..++...|++++|...|+...+.... +...+..+...+...|++++|...|+
T Consensus 133 ~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 133 ERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC------------
T ss_pred ChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999998876 57778888888888999999999999998886544 55666777777777788888777776
Q ss_pred HHh
Q 004273 388 QIS 390 (764)
Q Consensus 388 ~~~ 390 (764)
+..
T Consensus 210 ~~~ 212 (217)
T 2pl2_A 210 LEH 212 (217)
T ss_dssp ---
T ss_pred HHh
Confidence 653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-12 Score=122.03 Aligned_cols=196 Identities=11% Similarity=-0.010 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 132 (764)
..+..+...+...|++++|+..|++..+.+ |.++..+..+..++.+.|++++|+..+++..+.+ +.+...+..+...|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345556777899999999999999998876 4567778889999999999999999999999885 55677899999999
Q ss_pred Hcc-----------CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 004273 133 CKG-----------GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 133 ~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
... |++++|+..|++..+.+ +.+...|..+...+.+.|++++|+..|++..+.. .+...+..+..
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 999 99999999999997654 2356688899999999999999999999999887 68889999999
Q ss_pred HHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004273 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
++...|++++|...++...+..|.+...+..+..++...|++++|...|++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999889999999999999999999999999988764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-12 Score=125.97 Aligned_cols=250 Identities=8% Similarity=-0.151 Sum_probs=192.3
Q ss_pred hcCCcchHHHHHHHhhhccC---CCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHH
Q 004273 64 CRGERSRASHLLLNLGHAHH---SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEE 140 (764)
Q Consensus 64 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 140 (764)
..|++++|+..|+++.+... +.+...+..+...+...|+++.|.+.|+++.+.+ +.+..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45788999999999987632 1234568888899999999999999999999875 4578899999999999999999
Q ss_pred HHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHH
Q 004273 141 ASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 141 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
|...|++..+.. +.+..++..+...|.+.|++++|...|+.+.+. .|+.......+..+...|++++|...+....
T Consensus 96 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999997653 335678999999999999999999999999885 4555555556666677899999999998888
Q ss_pred ccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHH
Q 004273 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 221 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
...+++...+. ++..+...++.+.|...+....+....... .+ ..+|..+.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------------~~--~~~~~~la 222 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAE--------------------------HL--SETNFYLG 222 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHH--------------------------HH--HHHHHHHH
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccc--------------------------cc--cHHHHHHH
Confidence 87777766665 677777888889999998887653221110 00 14788889
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 004273 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351 (764)
Q Consensus 301 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 351 (764)
..+...|++++|...|++..+. .|+. +.....++...|++++|.+.+
T Consensus 223 ~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 223 KYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999875 3433 233344566777777776655
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-11 Score=127.99 Aligned_cols=223 Identities=9% Similarity=-0.006 Sum_probs=128.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCchhHHHHHHH
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR---GLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 371 (764)
.+..|...|...+.++++......+.+.-...+...+..|-..+...| +.++|...|+...+.|.. +...+..|..
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~ 221 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVAR 221 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHH
Confidence 556666666666655444444333322212233446667777777777 778888888888777754 4444455555
Q ss_pred HHHhc----CCHHHHHHHHHHHhhCCCCcchHHHHHH-H--hcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCC
Q 004273 372 ECSKA----LELDLAEALLDQISRCTNPKPFSAFLAA-C--DTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVN 443 (764)
Q Consensus 372 ~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~ 443 (764)
.|... ++.++|...|+... .+++..+..|-.. | ...+++++|+..|++..+ | +..
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~------------- 284 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR------------- 284 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH-------------
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH-------------
Confidence 66544 67888888888877 4477777777766 4 457888888888887765 3 111
Q ss_pred CchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhc----cCcHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA----EGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519 (764)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~li~~~ 519 (764)
.+..|...|.. ..++++|...|+... +.+...+..+...|
T Consensus 285 -----------------------------------A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 285 -----------------------------------AELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIY 328 (452)
T ss_dssp -----------------------------------HHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 11222222321 126677777777665 44555555555555
Q ss_pred HH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCC
Q 004273 520 VE----AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI----IRCFKSASALVSMMVRDG 574 (764)
Q Consensus 520 ~~----~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g 574 (764)
.. ..+.++|..+|++..+.|. |+ ....|-..|.. ..+.++|..+|+...+.|
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 44 2366666666666666552 22 22223333332 235556666666655554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-11 Score=115.34 Aligned_cols=206 Identities=12% Similarity=-0.037 Sum_probs=176.6
Q ss_pred hHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004273 51 ISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 51 ~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 130 (764)
....+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++.|.+.++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 35566677888999999999999999998875 4556788889999999999999999999999875 457778999999
Q ss_pred HHHcc-CCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccC
Q 004273 131 ALCKG-GYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN 208 (764)
Q Consensus 131 ~~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (764)
.|... |++++|...|+++.+ .+..| +...+..+...+.+.|++++|+..|+.+.+... .+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence 99999 999999999999976 33333 356788899999999999999999999988642 257788889999999999
Q ss_pred hhHHHHHHHHHHccCC-CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 209 LSAVHEIWEDYIKHYS-LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 209 ~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
+++|...++.+.+..+ .+...+..+...+...|+.+.|..+++.+.+ ..|+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~ 215 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCC
Confidence 9999999999998877 8888899999999999999999999999886 44544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-11 Score=128.78 Aligned_cols=311 Identities=11% Similarity=0.028 Sum_probs=199.1
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCCh---hHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004273 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDP---LFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 134 (764)
+...+.+.|++++|++.|++..+.| ++..+..+...+...|++ +.|.+.|++..+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4566788999999999999998876 344455566666667777 8999999988854 55566677775555
Q ss_pred cC-----CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH---HHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 004273 135 GG-----YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV---HANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 135 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
.| ++++|..+|++..+. + +...+..|...|...+..+ ++.+.+......| +...+..+...|...
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN-G---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT-T---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 54 789999999998753 2 2337777888887765544 3444455544443 455667777778887
Q ss_pred cChhHHHHHHHHHHcc-CCCCHHhHHHHHHHhhccC---CHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCcc
Q 004273 207 KNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLR---DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (764)
+.++++......+.+. ...++.++..|..+|.+.| +.++|++.|++..+.|....
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a--------------------- 213 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA--------------------- 213 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH---------------------
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH---------------------
Confidence 8666555554444332 3344448899999999999 99999999999988553322
Q ss_pred CCcccchhhhHhhHHHHHHHHHcc----CCHHHHHHHHHHHHHCCCCCCcccHHHHHHH-H--HhcCChhHHHHHHHHHH
Q 004273 283 LNALPVMKVLRWSFSDVIHACGRT----QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA-I--VSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~--~~~~~~~~a~~~~~~m~ 355 (764)
..+..|...|... +++++|+..|++.. .| +...+..+-.. + ...+++++|...|++..
T Consensus 214 -----------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 214 -----------QRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp -----------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 2445666666554 78999999999987 33 44555555555 3 46789999999999988
Q ss_pred HCCCCCchhHHHHHHHHHHhcC-----CHHHHHHHHHHHhhCCCCcchHHHHHHHhc----CCCHHHHHHHHHHHhh
Q 004273 356 QNNLKPQDSTIATLSVECSKAL-----ELDLAEALLDQISRCTNPKPFSAFLAACDT----MDKPERAIKIFAKMRQ 423 (764)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~ 423 (764)
+.| +...+..|...|. .| +.++|...|+... .+++..+..|-..|.. ..++++|...|++..+
T Consensus 279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 877 5566666777776 45 8888888888877 5566677777666655 3367777777776655
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-11 Score=119.13 Aligned_cols=160 Identities=9% Similarity=-0.063 Sum_probs=72.9
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh--hhhHHHHHHHh
Q 004273 92 HILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL--PVYNSFLGACA 169 (764)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~ 169 (764)
.....+...|+++.|+..++...+.. +.+...+..+...|...|++++|+..|++..+ .+..|+. ..|..+...+.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence 33444444455555555555544442 22333444444455555555555555554443 1111111 11444444555
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHH-HHhhccCCHHHHHH
Q 004273 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV-WSFTRLRDLKSAYE 248 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~ 248 (764)
+.|++++|+..|+...+..+. +..++..+...+...|++++|.+.++...+..+.+...+..+. ..|. .+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHH
Confidence 555555555555554443211 3334444444555555555555555555444444444444444 2222 235555555
Q ss_pred HHHHHHH
Q 004273 249 TLQHMVA 255 (764)
Q Consensus 249 ~~~~m~~ 255 (764)
.|+++.+
T Consensus 164 ~~~~a~~ 170 (272)
T 3u4t_A 164 SFVKVLE 170 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-11 Score=118.00 Aligned_cols=165 Identities=9% Similarity=-0.068 Sum_probs=100.0
Q ss_pred chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHH
Q 004273 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 167 (764)
..+..+...+...|+++.|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHH
Confidence 345556666666677777777777766653 3355566666677777777777777777665432 2244566666666
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH
Q 004273 168 CAKLHSMVHANLCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
|.+.|++++|.+.|+.+...+..| +...+..+...+...|++++|.+.++...+..+.+...+..+..++...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777666522233 3344455555555666666666666665555555555555566666666666666
Q ss_pred HHHHHHHHH
Q 004273 247 YETLQHMVA 255 (764)
Q Consensus 247 ~~~~~~m~~ 255 (764)
...|+++.+
T Consensus 195 ~~~~~~~~~ 203 (252)
T 2ho1_A 195 RQYYDLFAQ 203 (252)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 666655554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-11 Score=114.67 Aligned_cols=200 Identities=7% Similarity=-0.125 Sum_probs=127.1
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
+..+..+...+...|+++.|.+.++.+.+.. +.+...+..+...|...|++++|.+.|++..+.. +.+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence 3445666666777777777777777777653 3455666777777777777777777777765432 234556667777
Q ss_pred HHhcc-CCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHH
Q 004273 167 ACAKL-HSMVHANLCLDLMDSRMVGKN-EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244 (764)
Q Consensus 167 ~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 244 (764)
.+... |++++|...++.+.+.+..|+ ...+..+...+...|++++|...++.+.+..+.+...+..+..++.+.|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 77777 777777777777766222222 3455566666666777777777776666655556666666666666667777
Q ss_pred HHHHHHHHHHHhhhcc-cchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 245 SAYETLQHMVALAMMG-KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 245 ~A~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
+|...++++.+. .| +. ...+..+...+...|+.+.+..+++.+.+
T Consensus 165 ~A~~~~~~~~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSR--VEVLQ------------------------------ADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHH--HCSCC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCC------------------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 777666666652 22 21 02455555566666666666666666654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=8e-12 Score=120.83 Aligned_cols=206 Identities=9% Similarity=-0.050 Sum_probs=162.5
Q ss_pred hhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHH
Q 004273 50 SISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMM 129 (764)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 129 (764)
.....+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++.|.+.++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 344556666777889999999999999998865 4567778888899999999999999999999875 45778899999
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccCh
Q 004273 130 QALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
..|...|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|...++.+.+... .+...+..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999987654 34567888999999999999999999999987643 3677888889999999999
Q ss_pred hHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
++|...++.+.+..+.+..++..+..+|.+.|++++|...|+++.+ ..|+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~ 226 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDH 226 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcch
Confidence 9999999999988888899999999999999999999999999988 45544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-11 Score=118.68 Aligned_cols=244 Identities=9% Similarity=-0.063 Sum_probs=192.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc--HHHHHHHHHHH
Q 004273 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN--NKCYLLMMQAL 132 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~ 132 (764)
+......+...|++++|+..|++..+.. +.+...+..+..++...|+++.|++.++...+.+..++ ...|..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445667889999999999999998876 44566888899999999999999999999998432222 23488999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHH
Q 004273 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
...|++++|+..|++..+.. +.+..+|..+...|...|++++|+..|+...+.. +.+..++..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997654 2355689999999999999999999999988763 22455666665245556699999
Q ss_pred HHHHHHHHccCCCCHHhHHHHHHHhhccCC---HHHHHHHHHHHHHhhhc-ccchhcccccccccccccCCCccCCcccc
Q 004273 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRD---LKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
.+.++.+.+..+.+...+..+..++...|+ .+.|...|+++.+.... |+..
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------------- 216 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY------------------------- 216 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-------------------------
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-------------------------
Confidence 999999999888888999999999998888 88899999998874211 2210
Q ss_pred hhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc
Q 004273 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 329 (764)
......+|..+...|.+.|++++|.+.|++..+. .|+..
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 255 (272)
T 3u4t_A 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNK 255 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHH
Confidence 0001147888899999999999999999999875 35443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-11 Score=122.98 Aligned_cols=245 Identities=9% Similarity=-0.056 Sum_probs=190.3
Q ss_pred chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC-HHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY-LEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
..|..+..++...|+++.|++.+++.++.+ +-+..+|+.+..+|...|+ +++|+..|++..+.+ +-+...|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 346777777888899999999999988875 4567788888889999996 999999999887654 335668888888
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhc-cCCHHH
Q 004273 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR-LRDLKS 245 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 245 (764)
++.+.|++++|+..|+.+.+..+. +...|..+..++...|++++|...++.+++..+.+..+|+.+..++.+ .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999999886533 677888888888899999999999999999888899999999999988 666577
Q ss_pred H-----HHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccC--CHHHHHHHHHH
Q 004273 246 A-----YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ--NSGLAEQLMLQ 318 (764)
Q Consensus 246 A-----~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~ 318 (764)
| +..|++..+ +.|+. ...|+.+...+...| ++++|++.+.+
T Consensus 254 A~~~~el~~~~~Al~--l~P~~------------------------------~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHN------------------------------ESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTC------------------------------HHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HCCCC------------------------------HHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 7 588888887 56655 258888888888888 68999999988
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcC---------ChhHHHHHHHHH-HHCCCCCchhHHHHHHH
Q 004273 319 MQSLGLQPSSHTYDGFIRAIVSDR---------GLRNGMEVLKIM-QQNNLKPQDSTIATLSV 371 (764)
Q Consensus 319 m~~~g~~p~~~t~~~li~~~~~~~---------~~~~a~~~~~~m-~~~~~~~~~~~~~~li~ 371 (764)
+ +. ...+...+..+...+.+.| .+++|..+++.+ .+.+.. ....|..+..
T Consensus 302 ~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~ 361 (382)
T 2h6f_A 302 L-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGR 361 (382)
T ss_dssp H-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHH
T ss_pred h-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 7 32 2334566777888887764 258899999888 554322 2334444443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.5e-12 Score=131.12 Aligned_cols=278 Identities=10% Similarity=-0.112 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCC----cchHHHHHHHhhCCCChhHHHHHHHHHHHc----Cccc-cH
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLG----ADDFFHILNYCARSPDPLFVMETWRMMEEK----EIGL-NN 122 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 122 (764)
...+......+...|++++|+..|++..+.+ +.+ ...+..+...+...|+++.|...+++..+. +-.| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445556777889999999999999998875 223 245778888889999999999999987653 2122 35
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCC--------------------HHHHH
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHS--------------------MVHAN 178 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~A~ 178 (764)
.++..+...|...|++++|...+++..+...-.++ ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 57888889999999999999999877543211122 3478888888999999 99999
Q ss_pred HHHHHHHhc----CCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHccC--CCC----HHhHHHHHHHhhccCCHHHHH
Q 004273 179 LCLDLMDSR----MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY--SLS----IFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 179 ~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~ 247 (764)
..++..... +-.| ...++..+...+...|++++|.+.++...+.. .++ ..++..+..+|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 998876542 1111 23366777778888999999999998887631 122 237888888999999999999
Q ss_pred HHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CC
Q 004273 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL-QP 326 (764)
Q Consensus 248 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p 326 (764)
..+++..+........ .....++..+...+...|++++|...|++..+... .+
T Consensus 248 ~~~~~al~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDR--------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp HHHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcCc--------------------------hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 9999887632221110 00125778888888999999999998888764311 01
Q ss_pred C----cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004273 327 S----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 327 ~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 356 (764)
+ ..++..+...+...|++++|...+++..+
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 33555666667777777777777776554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-11 Score=126.53 Aligned_cols=241 Identities=10% Similarity=-0.031 Sum_probs=196.5
Q ss_pred cccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCC-cchHHHHHHHhhhc
Q 004273 3 RPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGE-RSRASHLLLNLGHA 81 (764)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~-~~~A~~~~~~~~~~ 81 (764)
.|.....+..+...+.+.|++++|+ ..|...+...|+. ...|..+...+...|+ +++|+..|++....
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al----------~~~~~al~l~P~~-~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l 161 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAF----------KLTRDAIELNAAN-YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE 161 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHH----------HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHH----------HHHHHHHHhCccC-HHHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 4555567777888899999999999 5555567777874 4456666777888997 99999999999987
Q ss_pred cCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhh
Q 004273 82 HHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVY 161 (764)
Q Consensus 82 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 161 (764)
+ +-+...|+.+..++...|+++.|+..|+++++.+ +.+...|..+..++.+.|++++|+..|+++.+.+ +.+...|
T Consensus 162 ~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~ 237 (382)
T 2h6f_A 162 Q-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVW 237 (382)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHH
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHH
Confidence 6 4566788999999999999999999999999986 5678899999999999999999999999998764 3456789
Q ss_pred HHHHHHHhc-cCCHHHH-----HHHHHHHHhcCCCCChhhHHHHHHHHHhcc--ChhHHHHHHHHHHccCCCCHHhHHHH
Q 004273 162 NSFLGACAK-LHSMVHA-----NLCLDLMDSRMVGKNEVTYTELLKLAVWQK--NLSAVHEIWEDYIKHYSLSIFSLRKF 233 (764)
Q Consensus 162 ~~li~~~~~-~g~~~~A-----~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l 233 (764)
+.+..++.+ .|..++| +..|+......+. +...|..+...+...| ++++|.+.+..+ +..+.+...+..+
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~L 315 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFL 315 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHH
Confidence 999999998 6665777 5888888875433 5667888888888877 689999999888 6677888999999
Q ss_pred HHHhhccC---------CHHHHHHHHHHH-HHhhhcccc
Q 004273 234 VWSFTRLR---------DLKSAYETLQHM-VALAMMGKL 262 (764)
Q Consensus 234 i~~~~~~g---------~~~~A~~~~~~m-~~~~~~~~~ 262 (764)
..+|.+.| ..++|+++|+++ .+ +.|..
T Consensus 316 a~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r 352 (382)
T 2h6f_A 316 VDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIR 352 (382)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGG
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchh
Confidence 99998874 358999999998 65 45544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-11 Score=125.17 Aligned_cols=278 Identities=10% Similarity=-0.116 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCC----cchHHHHHHHhhCCCChhHHHHHHHHHHHc----Ccc-ccH
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLG----ADDFFHILNYCARSPDPLFVMETWRMMEEK----EIG-LNN 122 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 122 (764)
...+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|.+.+++..+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3445555677889999999999999998875 223 245778888899999999999999987653 212 235
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCC--------------------HHHHH
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHS--------------------MVHAN 178 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~A~ 178 (764)
.++..+...|...|++++|...+++..+...-.++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 57888889999999999999999887543211122 3377888888999999 89999
Q ss_pred HHHHHHHhc----CCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHccCC--C----CHHhHHHHHHHhhccCCHHHHH
Q 004273 179 LCLDLMDSR----MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS--L----SIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 179 ~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~ 247 (764)
..++..... +..| ...++..+...+...|++++|.+.++...+..+ + ...++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888776542 1111 233566777778888999999988888875311 1 1337778888888889999998
Q ss_pred HHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-C
Q 004273 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ-P 326 (764)
Q Consensus 248 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p 326 (764)
..+++..+........ .....++..+...+...|++++|...+++..+.... .
T Consensus 244 ~~~~~al~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDR--------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcch--------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 8888877632221110 000146777788888888888888888776542100 0
Q ss_pred C----cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004273 327 S----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 327 ~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 356 (764)
+ ..++..+...+...|++++|...+++..+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1 22344445555555555555555555544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-11 Score=117.62 Aligned_cols=164 Identities=10% Similarity=-0.080 Sum_probs=73.8
Q ss_pred chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHH
Q 004273 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 167 (764)
..|..+...+...|+++.|...|+++.+.. +.+...+..+...|...|++++|...|++..+.. +.+..++..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~ 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNV 100 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHH
Confidence 345555555555566666666666655542 3344555555555666666666666665554332 2234455555555
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHH
Q 004273 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
+...|++++|...|+.+.+... .+...+..+...+...|++++|.+.++.+.+..+.+...+..+..++.+.|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555555554321 133444444444445555555555555444444444444444444444444444444
Q ss_pred HHHHHHHH
Q 004273 248 ETLQHMVA 255 (764)
Q Consensus 248 ~~~~~m~~ 255 (764)
..|+++.+
T Consensus 180 ~~~~~~~~ 187 (243)
T 2q7f_A 180 SQFAAVTE 187 (243)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-11 Score=128.58 Aligned_cols=243 Identities=10% Similarity=-0.143 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCc----chHHHHHHHhhCCCChhHHHHHHHHHHHc----C-ccccH
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGA----DDFFHILNYCARSPDPLFVMETWRMMEEK----E-IGLNN 122 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 122 (764)
...+......+...|++++|+..|++..+.+ +.+. ..+..+...+...|+++.|.+.+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3444456677888999999999999988875 2233 35777888888889999999999887764 1 12345
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcC----CCCChhhhHHHHHHHhccCC-----------------HHHHHHHH
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYG----IYPILPVYNSFLGACAKLHS-----------------MVHANLCL 181 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 181 (764)
.++..+...|...|++++|...|++..+... .+....++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6788888899999999999999887654311 11123477788888888899 88888888
Q ss_pred HHHHhc----CCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHccCC--CC----HHhHHHHHHHhhccCCHHHHHHHH
Q 004273 182 DLMDSR----MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS--LS----IFSLRKFVWSFTRLRDLKSAYETL 250 (764)
Q Consensus 182 ~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~ 250 (764)
++..+. +-.| ...++..+...+...|++++|.+.+++..+..+ .+ ..++..+..+|...|++++|...|
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 776442 1111 223566677777888888888888887775321 11 236777777888888888888888
Q ss_pred HHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 251 QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 251 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
++..+........ .....++..+...+...|++++|...|++...
T Consensus 287 ~~al~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 287 KRTLALAVELGER--------------------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH--------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8776632211110 00014666777777777777777777777654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=130.39 Aligned_cols=281 Identities=10% Similarity=-0.095 Sum_probs=208.2
Q ss_pred chhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhh---hHHHHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 004273 6 LRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEES---ISKATQMQIVDALCRGERSRASHLLLNLGHAH 82 (764)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~---~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~ 82 (764)
....+..+...+...|++++|+ ..++++ +...|+. ....+..+...+...|++++|+..|++.....
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~-~~~~~a---------l~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGV-AFFQAA---------IQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA 116 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHH-HHHHHH---------HHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHH-HHHHHH---------HHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3445667888899999999999 554443 3334442 23567777888899999999999999886541
Q ss_pred -----CCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcC-----ccccHHHHHHHHHHHHccCC---------------
Q 004273 83 -----HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE-----IGLNNKCYLLMMQALCKGGY--------------- 137 (764)
Q Consensus 83 -----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~--------------- 137 (764)
.+.....+..+...+...|+++.|.+.+++..+.. .+....++..+...|...|+
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~ 196 (411)
T 4a1s_A 117 KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK 196 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence 12233557888889999999999999999887652 12235578889999999999
Q ss_pred --HHHHHHHHHHHhhhc---CC-CCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhc
Q 004273 138 --LEEASNLIYFLGERY---GI-YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQ 206 (764)
Q Consensus 138 --~~~A~~~~~~~~~~~---~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~ 206 (764)
+++|++.+++..+.. +. .....++..+...|...|++++|+..|++..+.... ++ ..++..+...+...
T Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (411)
T 4a1s_A 197 EALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL 276 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC
Confidence 999999988764321 11 112347888889999999999999999988764211 12 22677888899999
Q ss_pred cChhHHHHHHHHHHccCC------CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCC
Q 004273 207 KNLSAVHEIWEDYIKHYS------LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
|++++|.+.++...+..+ ....++..+..+|...|++++|...|++..+........
T Consensus 277 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------- 339 (411)
T 4a1s_A 277 GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR----------------- 339 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----------------
T ss_pred cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh-----------------
Confidence 999999999999886322 225678889999999999999999999988732221110
Q ss_pred ccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
.....++..+...|...|++++|.+.|++..+.
T Consensus 340 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 340 ---------IGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp ---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 000147888899999999999999999988763
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-08 Score=111.23 Aligned_cols=471 Identities=10% Similarity=0.062 Sum_probs=250.7
Q ss_pred CcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC---HHHHHH
Q 004273 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY---LEEASN 143 (764)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 143 (764)
...+.+..|+..+..+ +.|...+..++..+.+.++++.+..+|+.+... ++.+...|...+..-.+.|. ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455555666666555 568888889998888888899999999998887 46677788888888888888 999999
Q ss_pred HHHHHhhhcCCCCChhhhHHHHHHHhccCCH--------HHHHHHHHHHHhc-CC-CCC-hhhHHHHHHHHH--------
Q 004273 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSM--------VHANLCLDLMDSR-MV-GKN-EVTYTELLKLAV-------- 204 (764)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~-g~-~p~-~~t~~~ll~~~~-------- 204 (764)
+|++.......+|++..|..-+.-..+.++. +...++|+..... |. .|+ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9998875432347777777776655554443 3344677765543 55 454 345666555432
Q ss_pred -hccChhHHHHHHHHHHccCCCC--HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCc
Q 004273 205 -WQKNLSAVHEIWEDYIKHYSLS--IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281 (764)
Q Consensus 205 -~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (764)
..++++.+..+|..+... |.. ..+|......-...+. ..+.+++.+..
T Consensus 205 eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~--------------------------- 255 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQ-LTARRHIGELS--------------------------- 255 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHH---------------------------
T ss_pred HHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhh---------------------------
Confidence 234466677777776642 111 1122111110000000 00111111100
Q ss_pred cCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH--CCCC---CCc--------------------ccHHHHHH
Q 004273 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS--LGLQ---PSS--------------------HTYDGFIR 336 (764)
Q Consensus 282 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~---p~~--------------------~t~~~li~ 336 (764)
.+++.|...+.++.. .++. |.. ..|...+.
T Consensus 256 -------------------------~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~ 310 (679)
T 4e6h_A 256 -------------------------AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR 310 (679)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH
Confidence 111222222222111 0100 000 00111110
Q ss_pred HHHhcC--------ChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHHHhhCC--CCcchHHHHHHH
Q 004273 337 AIVSDR--------GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE-ALLDQISRCT--NPKPFSAFLAAC 405 (764)
Q Consensus 337 ~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~--~~~~~~~li~~~ 405 (764)
+.+.. ..+.+..+|++....... +...|-..+..+...|+.+.|. .+|+...... +...|-.++...
T Consensus 311 -fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~e 388 (679)
T 4e6h_A 311 -WESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQY 388 (679)
T ss_dssp -HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -HHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 00000 012233445554443222 4444555555555555555554 5555544321 223344455555
Q ss_pred hcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 004273 406 DTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485 (764)
Q Consensus 406 ~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (764)
-+.|++++|..+|+.+...+ |. .+..+ .... |+.
T Consensus 389 e~~~~~e~aR~iyek~l~~l-~~--~~~~~----------------------------------~~~~-p~~-------- 422 (679)
T 4e6h_A 389 ELNTKIPEIETTILSCIDRI-HL--DLAAL----------------------------------MEDD-PTN-------- 422 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHH-HH--HHHHH----------------------------------HHHS-TTC--------
T ss_pred HHhCCHHHHHHHHHHHHHHH-HH--Hhhhh----------------------------------hhcc-Ccc--------
Confidence 56666666666666554300 00 00000 0000 000
Q ss_pred HHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHccCChhHH
Q 004273 486 ALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC-G-IPPNAATYNIMIDCCSIIRCFKSA 563 (764)
Q Consensus 486 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~-g-~~p~~~t~~~ll~~~~~~~~~~~a 563 (764)
+...... .......|...+....+.|+.+.|..+|.+..+. + ..+......+.+.- ...++.+.|
T Consensus 423 --------~~~~~~~----~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~-~~~~d~e~A 489 (679)
T 4e6h_A 423 --------ESAINQL----KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY-HISKDTKTA 489 (679)
T ss_dssp --------HHHHHHH----HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH-TTTSCCHHH
T ss_pred --------hhhhhhh----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HhCCCHHHH
Confidence 0000000 0001225666677777778888888888888775 2 12222222222321 123558999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004273 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH--DVLLYNTILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 564 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 641 (764)
..+|+...+. ++-+...|...++.....|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.++.+++.
T Consensus 490 r~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 490 CKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999888876 44456667788888888899999999999987653222 34578888888888999999999999998
Q ss_pred HCCCCCCHhhHHHHHH
Q 004273 642 QNKVQPDPSTCHFVFS 657 (764)
Q Consensus 642 ~~~~~p~~~~~~~ll~ 657 (764)
+. .|+......+..
T Consensus 569 ~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 569 EK--FPEVNKLEEFTN 582 (679)
T ss_dssp HH--STTCCHHHHHHH
T ss_pred Hh--CCCCcHHHHHHH
Confidence 73 455544444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.6e-10 Score=108.27 Aligned_cols=221 Identities=9% Similarity=-0.075 Sum_probs=111.0
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004273 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK----GGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 164 (764)
.+..+...+...|+++.|.+.|++..+.+ +...+..+...|.. .|++++|...|++..+. + +...+..+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l 80 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHHHH
Confidence 33444444444445555555555444421 23344444444444 45555555555544332 1 33344444
Q ss_pred HHHHhc----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----ccChhHHHHHHHHHHccCCCCHHhHHHHHHH
Q 004273 165 LGACAK----LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW----QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236 (764)
Q Consensus 165 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 236 (764)
...|.. .+++++|+..|+...+.+ +..++..+-..|.. .+++++|...++...+.. +...+..+...
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 444444 555555555555544432 33444444444444 455555555555444322 33444445555
Q ss_pred hhc----cCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHc----cCC
Q 004273 237 FTR----LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR----TQN 308 (764)
Q Consensus 237 ~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 308 (764)
|.. .+++++|...|++..+.+ +. ..+..+...|.. .++
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~--------------------------------~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK--DS--------------------------------PGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT--CH--------------------------------HHHHHHHHHHHHTCSSCCC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC--CH--------------------------------HHHHHHHHHHHcCCCCCcc
Confidence 554 566666666666665531 11 255555666666 666
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 004273 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 309 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 358 (764)
+++|+..|++..+.+ +...+..+-..+.. .+++++|...|+...+.|
T Consensus 202 ~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 202 FKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666666666666543 23445555555555 666666666666666554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-09 Score=107.44 Aligned_cols=126 Identities=10% Similarity=-0.095 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCChhhH
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK----LHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
++.++..+...|...|++++|...|++..+ +.+...+..+...|.. .+++++|+..|+...+.+ +..++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 455666777777777888888888877764 2244566667777777 777777777777776654 55555
Q ss_pred HHHHHHHHh----ccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhc----cCCHHHHHHHHHHHHH
Q 004273 197 TELLKLAVW----QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR----LRDLKSAYETLQHMVA 255 (764)
Q Consensus 197 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 255 (764)
..+-..+.. .+++++|.+.++...+. .+..++..+...|.. .+++++|...|++..+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 555555555 55556655555555443 144455555555555 5555555555555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-10 Score=121.28 Aligned_cols=276 Identities=9% Similarity=-0.069 Sum_probs=188.2
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHhhh---cCCCC-Ch
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN----NKCYLLMMQALCKGGYLEEASNLIYFLGER---YGIYP-IL 158 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~ 158 (764)
...+......+...|+++.|...|++..+.+ +.+ ..++..+...|...|++++|...|++..+. .+..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445667778888999999999999999874 223 357888899999999999999999876432 11112 24
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhccC--------------------hhHHH
Q 004273 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQKN--------------------LSAVH 213 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~--------------------~~~a~ 213 (764)
.++..+...|...|++++|+..++...+.... ++ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 47888888999999999999999887653111 12 3467778888889999 99999
Q ss_pred HHHHHHHcc------CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCccc
Q 004273 214 EIWEDYIKH------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287 (764)
Q Consensus 214 ~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (764)
..+....+. .+....++..+..+|...|++++|...|++..+........
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------------ 223 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK------------------------ 223 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH------------------------
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc------------------------
Confidence 988887652 12224578888899999999999999999988632221110
Q ss_pred chhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C
Q 004273 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ-PS----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK-P 361 (764)
Q Consensus 288 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~ 361 (764)
.....+|..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...++...+.... .
T Consensus 224 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 224 --AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 011247888889999999999999999887642100 11 335556666677777777777777666542110 0
Q ss_pred c----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004273 362 Q----DSTIATLSVECSKALELDLAEALLDQI 389 (764)
Q Consensus 362 ~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 389 (764)
+ ..++..+...|...|++++|...+++.
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 223344444555555555555554443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-10 Score=118.13 Aligned_cols=275 Identities=9% Similarity=-0.071 Sum_probs=188.4
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHhhh---cCCC-CChhhh
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLN----NKCYLLMMQALCKGGYLEEASNLIYFLGER---YGIY-PILPVY 161 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~-~~~~~~ 161 (764)
+......+...|+++.|...++++.+.+ +.+ ...+..+...|...|++++|...+++..+. .+.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 4455667778899999999999999874 223 357888899999999999999999876432 1111 124578
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhccC--------------------hhHHHHHH
Q 004273 162 NSFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQKN--------------------LSAVHEIW 216 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~--------------------~~~a~~~~ 216 (764)
..+...|...|++++|...++...+.... ++ ..++..+...+...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 88889999999999999999887653111 12 3367777888888999 89998888
Q ss_pred HHHHcc------CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchh
Q 004273 217 EDYIKH------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 217 ~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
+...+. .+....++..+...+...|+++.|...+++..+........ .
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------------------------~ 220 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--------------------------A 220 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH--------------------------H
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh--------------------------H
Confidence 887642 12224578888889999999999999999987632221110 0
Q ss_pred hhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----cccHHHHHHHHHhcCChhHHHHHHHHHHHCCC----C-
Q 004273 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL-QPS----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL----K- 360 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~- 360 (764)
....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+... .
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 0124788888889999999999999988764210 011 33556666677777777777777777654211 0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004273 361 PQDSTIATLSVECSKALELDLAEALLDQISR 391 (764)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 391 (764)
....++..+...|.+.|++++|...+++...
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 0122344555566666666666666655543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-09 Score=109.89 Aligned_cols=220 Identities=9% Similarity=0.006 Sum_probs=176.9
Q ss_pred chHHHHHHHhhhccCCCCcchHHHHHHHhh-------CCCCh-------hHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004273 69 SRASHLLLNLGHAHHSLGADDFFHILNYCA-------RSPDP-------LFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 69 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 134 (764)
++|+..|++..... +.++..|..+...+. +.|++ ++|+.+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67889999998865 556677777777664 35776 8999999999983124466789999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCCh-h-hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhccChhH
Q 004273 135 GGYLEEASNLIYFLGERYGIYPIL-P-VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA-VWQKNLSA 211 (764)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~-~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~ 211 (764)
.|++++|..+|++..+. .|+. . +|..+...+.+.|++++|..+|+...+... ++...|....... ...|+.+.
T Consensus 112 ~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999753 4543 3 799999999999999999999999998643 2344444333322 23699999
Q ss_pred HHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhh-hcccchhcccccccccccccCCCccCCcccchh
Q 004273 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA-MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
|.++|+...+..+.+...|..++..+.+.|+.+.|..+|++..+.. +.|+..
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~--------------------------- 240 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS--------------------------- 240 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC---------------------------
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH---------------------------
Confidence 9999999999888899999999999999999999999999999852 343311
Q ss_pred hhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
...|..++....+.|+.+.|..+++++.+.
T Consensus 241 --~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 241 --GEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp --HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 148888999999999999999999999875
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-07 Score=104.08 Aligned_cols=457 Identities=10% Similarity=0.008 Sum_probs=260.3
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC---HHHHHH
Q 004273 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS---MVHANL 179 (764)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 179 (764)
....+..++..+..+ +-|...|..++..+.+.+.++.|..+|+++.... +.....|..-+..-.+.|+ ++.+..
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 444566677777765 6789999999999999999999999999998764 4455678888888888888 999999
Q ss_pred HHHHHHhcC-CCCChhhHHHHHHHHHhccCh--------hHHHHHHHHHHcc--C--CCCHHhHHHHHHHhh--------
Q 004273 180 CLDLMDSRM-VGKNEVTYTELLKLAVWQKNL--------SAVHEIWEDYIKH--Y--SLSIFSLRKFVWSFT-------- 238 (764)
Q Consensus 180 ~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~--~--~~~~~~~~~li~~~~-------- 238 (764)
+|++..... ..|+...|..-+......++. +.+.++|+..... . +.+...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999999863 137888888877766665554 3455778877753 3 334567777766543
Q ss_pred -ccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHH
Q 004273 239 -RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLML 317 (764)
Q Consensus 239 -~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 317 (764)
..++++.+.++|+++.. .|..... .+|.. |.
T Consensus 205 eeq~~~~~~R~iy~raL~---iP~~~~~----------------------------~~w~~-----------------Y~ 236 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLC---QPMDCLE----------------------------SMWQR-----------------YT 236 (679)
T ss_dssp HHHHHHHHHHHHHHHHTT---SCCSSHH----------------------------HHHHH-----------------HH
T ss_pred HHHhHHHHHHHHHHHHHh---CccHHHH----------------------------HHHHH-----------------HH
Confidence 23356677778877764 1221000 12221 11
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC--CCC---Cch-hHHHHHHHHHHhcC-CHHHHHHHHHHHh
Q 004273 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN--NLK---PQD-STIATLSVECSKAL-ELDLAEALLDQIS 390 (764)
Q Consensus 318 ~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~---~~~-~~~~~li~~~~~~g-~~~~A~~~~~~~~ 390 (764)
..... + +..+...++.- ...++..|...+.++... ++. |.. .+.. ....-..+ .......+
T Consensus 237 ~fe~~-~--~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql~l----- 304 (679)
T 4e6h_A 237 QWEQD-V--NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQLLI----- 304 (679)
T ss_dssp HHHHH-H--CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHHHH-----
T ss_pred HHHHh-c--CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhhccccccccch--hccCCCCchhHHHHHHH-----
Confidence 11110 0 11111111111 112333444444443221 111 000 0000 00000000 00011111
Q ss_pred hCCCCcchHHHHHHHhcCC-------CHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHH
Q 004273 391 RCTNPKPFSAFLAACDTMD-------KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463 (764)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g-------~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (764)
|...+.---..+ ..+.+..+|++...-+.-+...|
T Consensus 305 -------W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW------------------------------- 346 (679)
T 4e6h_A 305 -------WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIW------------------------------- 346 (679)
T ss_dssp -------HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHH-------------------------------
T ss_pred -------HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHH-------------------------------
Confidence 112221111111 12334556666554111111111
Q ss_pred HHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHH-HHHHhc--CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCC-
Q 004273 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELI-QYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG- 539 (764)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g- 539 (764)
-..+..+...|+.++|. ++|+.. ..+.+...|-..+...-+.|++++|..+|+++.+..
T Consensus 347 -----------------~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~ 409 (679)
T 4e6h_A 347 -----------------FNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH 409 (679)
T ss_dssp -----------------HHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 11122222233334443 444332 122344456666666677777777777777776531
Q ss_pred --------CCCC------------HHHHHHHHHHHHccCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHHH
Q 004273 540 --------IPPN------------AATYNIMIDCCSIIRCFKSASALVSMMVRD-GFYPQTMTYTALIKILLDY-GDFDE 597 (764)
Q Consensus 540 --------~~p~------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~~-g~~~~ 597 (764)
-.|+ ...|...+....+.|+.+.|..+|..+.+. +. +....|...+..-.+. ++.+.
T Consensus 410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~ 488 (679)
T 4e6h_A 410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKT 488 (679)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHH
T ss_pred HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHH
Confidence 0142 235777777777889999999999999876 21 2233343333333344 45899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004273 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP--DPSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
|.++|+...+. ++-+...|...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+..+.+++
T Consensus 489 Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 489 ACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998875 45567788888888888999999999999998643222 2346667777778899999999999988
Q ss_pred HHhh
Q 004273 676 SMRM 679 (764)
Q Consensus 676 ~~~~ 679 (764)
....
T Consensus 568 ~~~~ 571 (679)
T 4e6h_A 568 FEKF 571 (679)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 7643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-10 Score=116.93 Aligned_cols=302 Identities=10% Similarity=-0.025 Sum_probs=200.3
Q ss_pred HhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHH--HHHHHhcCCcchHH-----------HHHHHhhhccC
Q 004273 17 FCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQ--IVDALCRGERSRAS-----------HLLLNLGHAHH 83 (764)
Q Consensus 17 ~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~--i~~~~~~~~~~~A~-----------~~~~~~~~~~~ 83 (764)
+.+.+++++|. .+.+++. ..+..+ .-+++ ...+..+ .+...-.+..+.+. +.++.+....
T Consensus 22 ~i~~~~~~~A~-~l~~~i~--~~~~~~-~~~~~--~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~- 94 (383)
T 3ulq_A 22 YIRRFSIPDAE-YLRREIK--QELDQM-EEDQD--LHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ- 94 (383)
T ss_dssp HHHTTCHHHHH-HHHHHHH--HHHHTS-CCCHH--HHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT-
T ss_pred HHHHcCHHHHH-HHHHHHH--HHHHhh-ccchH--HHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC-
Confidence 66788899998 5555441 212111 11222 2222221 22222234444444 7777765432
Q ss_pred CCCcchH------HHHHHHhhCCCChhHHHHHHHHHHHc----Cccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc
Q 004273 84 SLGADDF------FHILNYCARSPDPLFVMETWRMMEEK----EIGL-NNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 84 ~~~~~~~------~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 152 (764)
.+...+ ......+...|+++.|.+.+++..+. +-++ ...++..+...|...|++++|...+++..+..
T Consensus 95 -~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 173 (383)
T 3ulq_A 95 -ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY 173 (383)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 111222 22556677889999999999999874 2122 34678899999999999999999998876532
Q ss_pred CCCCC-----hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhccChhHHHHHHHHHHc-
Q 004273 153 GIYPI-----LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQKNLSAVHEIWEDYIK- 221 (764)
Q Consensus 153 ~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~- 221 (764)
.-.++ ..+++.+...|...|++++|+..|+...+.... ++ ..++..+...|...|++++|.+.+++..+
T Consensus 174 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 174 KEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 21222 347888999999999999999999987754111 11 23777888899999999999999999987
Q ss_pred ----cC-CCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhH
Q 004273 222 ----HY-SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 222 ----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
+. +....++..+..+|.+.|++++|...+++..+.......+.. ...+
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------~~~~ 306 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY---------------------------LSEF 306 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH---------------------------HHHH
T ss_pred HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH---------------------------HHHH
Confidence 44 455678999999999999999999999998874322111100 1246
Q ss_pred HHHHHHHHccCC---HHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004273 297 SDVIHACGRTQN---SGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 297 ~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 356 (764)
+.+...+...|+ +++|+.++++. +..|+ ...+..+...+...|++++|...+++..+
T Consensus 307 ~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 307 EFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677788888888 66666666654 22222 23455666677777888888777777654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-09 Score=100.23 Aligned_cols=167 Identities=8% Similarity=-0.042 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
++.+|..+...|...|++++|++.|++..+.+ +-+..+|..+...|.+.|++++|+..+......... +...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 44556666666666666666666666665443 223445666666666666666666666666554322 344444455
Q ss_pred HHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCC
Q 004273 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
..+...++++.+.+.+....+..+.+...+..+..+|.+.|++++|++.|++..+ ..|+.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~------------------ 140 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGF------------------ 140 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchh------------------
Confidence 5556666666666666666665666666666666667777777777777776665 34433
Q ss_pred ccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
..+|..+..+|.+.|++++|++.|++..+.
T Consensus 141 ------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 141 ------------IRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 146666666677777777777777666653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6.5e-10 Score=102.01 Aligned_cols=170 Identities=11% Similarity=-0.057 Sum_probs=130.4
Q ss_pred CcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004273 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 165 (764)
++..|..+...+...|+++.|++.|++.++.+ +-+..++..+...|.+.|++++|...++...... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 45567777888888888888888888887764 4466677788888888888888888888776543 23445666677
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHH
Q 004273 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
..+...++++.|...+.......+ .+...+..+...+...|++++|.+.+++..+..+.+..++..+..+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 777778888888888888776532 2566677777788888888888888888888778888888889999999999999
Q ss_pred HHHHHHHHHHhhhccc
Q 004273 246 AYETLQHMVALAMMGK 261 (764)
Q Consensus 246 A~~~~~~m~~~~~~~~ 261 (764)
|++.|++..+ +.|+
T Consensus 160 A~~~~~~al~--~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALE--KEEK 173 (184)
T ss_dssp HHHHHHHHHH--TTHH
T ss_pred HHHHHHHHHh--CCcc
Confidence 9999999887 4444
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.9e-09 Score=105.11 Aligned_cols=218 Identities=12% Similarity=0.056 Sum_probs=159.9
Q ss_pred hHHHHHHHHHHHcCccccHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHhhhcCCCC-ChhhhHHHHHHH
Q 004273 104 LFVMETWRMMEEKEIGLNNKCYLLMMQALC-------KGGYL-------EEASNLIYFLGERYGIYP-ILPVYNSFLGAC 168 (764)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~ 168 (764)
+.|..+|++.++.. +.++..|..++..+. +.|++ ++|..+|++..+. +.| +...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 67888999988864 557778888877775 35775 8999999988752 234 445888899999
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCh-h-hHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhh-ccCCHHH
Q 004273 169 AKLHSMVHANLCLDLMDSRMVGKNE-V-TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT-RLRDLKS 245 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 245 (764)
.+.|++++|..+|++..+. .|+. . .|..+...+.+.|++++|..+|+...+..+.+...|........ ..|+.+.
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999874 4543 2 68888888888888888888888888766666666655444422 3688888
Q ss_pred HHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-C
Q 004273 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG-L 324 (764)
Q Consensus 246 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~ 324 (764)
|..+|++..+ ..|+. ...|..++..+.+.|++++|..+|++..... +
T Consensus 188 A~~~~~~al~--~~p~~------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 188 AFKIFELGLK--KYGDI------------------------------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHHHHHHH--HHTTC------------------------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHH--hCCCc------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 8888888877 33433 1477788888888888888888888887753 3
Q ss_pred CCC--cccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004273 325 QPS--SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 325 ~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~ 358 (764)
.|+ ...|..++....+.|+.+.|..+++.+.+..
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 443 3356666666677777777777777776643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-10 Score=122.13 Aligned_cols=214 Identities=7% Similarity=-0.154 Sum_probs=181.1
Q ss_pred cchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCCh-hHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHH
Q 004273 68 RSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDP-LFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIY 146 (764)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 146 (764)
+++++..++...... +.+...+..+..++...|++ +.|++.|++..+.+ +.+...|..+...|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566677777665543 34667788888999999999 99999999999875 4567899999999999999999999999
Q ss_pred HHhhhcCCCCChhhhHHHHHHHhcc---------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------cCh
Q 004273 147 FLGERYGIYPILPVYNSFLGACAKL---------HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ--------KNL 209 (764)
Q Consensus 147 ~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------~~~ 209 (764)
+..+. .|+...+..+...|... |++++|+..|++..+..+. +...|..+..++... |++
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 98754 47778899999999999 9999999999999886433 577888888889888 999
Q ss_pred hHHHHHHHHHHccCC---CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcc
Q 004273 210 SAVHEIWEDYIKHYS---LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
++|.+.|+...+..+ .+...|..+..+|...|++++|...|++..+ ..|+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~------------------------ 291 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAW------------------------ 291 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC------------------------
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC------------------------
Confidence 999999999998766 7899999999999999999999999999988 55554
Q ss_pred cchhhhHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 004273 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 319 (764)
...+..+...+...|++++|++.+.++
T Consensus 292 ------~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 292 ------PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 147888888888889998888765443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-10 Score=117.72 Aligned_cols=240 Identities=8% Similarity=-0.112 Sum_probs=160.8
Q ss_pred hhHHHHHHHHHHHHhcCCcchHHHHHHHhhhc-------cCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHc------
Q 004273 50 SISKATQMQIVDALCRGERSRASHLLLNLGHA-------HHSLGADDFFHILNYCARSPDPLFVMETWRMMEEK------ 116 (764)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 116 (764)
.....+..+...+...|++++|+..|+++.+. ..+.....+..+...+...|+++.|.+.+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 44566777788889999999999999998763 22333456788888899999999999999988865
Q ss_pred Cc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc-----CC-CCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc--
Q 004273 117 EI-GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY-----GI-YPILPVYNSFLGACAKLHSMVHANLCLDLMDSR-- 187 (764)
Q Consensus 117 ~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 187 (764)
+- +....++..+...|...|++++|...|++..+.. +. +....++..+...+...|++++|+..|+...+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 21 3345678889999999999999999999886532 11 223456888888999999999999999888764
Q ss_pred ----CCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHcc--------CCCCH-H------hHHHHHHHhhccCCHHHHH
Q 004273 188 ----MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKH--------YSLSI-F------SLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 188 ----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~-~------~~~~li~~~~~~g~~~~A~ 247 (764)
+-.| ...++..+...+...|++++|.+.++.+.+. ..+.. . .+..+...+...+.+..+.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 1122 2346677777888889999998888887752 11111 1 1111222222333333333
Q ss_pred HHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 248 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
..+..... ..|.. ..+|..+...|.+.|++++|.+.|++..+
T Consensus 265 ~~~~~~~~--~~~~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKV--DSPTV------------------------------TTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----------CHHH------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCC--CCchH------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33433332 11111 25888999999999999999999998765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-09 Score=112.65 Aligned_cols=301 Identities=6% Similarity=-0.090 Sum_probs=181.3
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCC--CCcch--HHHHHHHh--hCCCChhHHH-----------HHHHHHHHcCcccc
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHS--LGADD--FFHILNYC--ARSPDPLFVM-----------ETWRMMEEKEIGLN 121 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~--~~~ll~~~--~~~~~~~~a~-----------~~~~~~~~~~~~~~ 121 (764)
-..+.+.+++++|..+++++.+.-.. .+... |..++..- ...++.+.+. +.++.+.....+.+
T Consensus 19 w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~ 98 (383)
T 3ulq_A 19 WYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLT 98 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCch
Confidence 44577899999999999998654211 23322 33333221 1113333333 66666654321111
Q ss_pred H----HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-C-
Q 004273 122 N----KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-K- 191 (764)
Q Consensus 122 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p- 191 (764)
. ..+......+...|++++|...|++..+...-.++ ..+|..+...|...|+++.|+..++...+.-.. +
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 1 12223566778899999999999988653211122 357888889999999999999999887653111 1
Q ss_pred ----ChhhHHHHHHHHHhccChhHHHHHHHHHHccC--CCC----HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhccc
Q 004273 192 ----NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY--SLS----IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261 (764)
Q Consensus 192 ----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 261 (764)
...++..+...|...|++++|.+.+....+.. .++ ..++..+..+|...|++++|.+.|++..+......
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 13466777778888999999999888887631 121 24788888888899999999998888876311111
Q ss_pred c-hhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC---CCC-cccHHHHHH
Q 004273 262 L-YINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL---QPS-SHTYDGFIR 336 (764)
Q Consensus 262 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~-~~t~~~li~ 336 (764)
. +.. ..++..+...+.+.|++++|...+++..+... .|. ...+..+-.
T Consensus 259 ~~~~~---------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 311 (383)
T 3ulq_A 259 ILPSL---------------------------PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKS 311 (383)
T ss_dssp CGGGH---------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cchhH---------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 000 15788888888888888888888888664210 111 112344444
Q ss_pred HHHhcCC---hhHHHHHHHHHHHCCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004273 337 AIVSDRG---LRNGMEVLKIMQQNNLKPQD-STIATLSVECSKALELDLAEALLDQI 389 (764)
Q Consensus 337 ~~~~~~~---~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~ 389 (764)
.+...|+ +.+|..+++.. +..|+. ..+..+...|...|++++|...|+..
T Consensus 312 ~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 312 LYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555565 44444444433 222221 23334555555555555555555544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.4e-11 Score=120.46 Aligned_cols=249 Identities=10% Similarity=-0.024 Sum_probs=171.8
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhc--
Q 004273 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA-- 81 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~-- 81 (764)
|.....+..++..|...|++++|+ .+++++. +.+....+..+......+..+...+...|++++|+..|++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~--~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAV-PLCKQAL--EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHH--HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHH--HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 455567888999999999999999 5555442 11111111123344566777788899999999999999998764
Q ss_pred ----c-CCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHc------Cc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004273 82 ----H-HSLGADDFFHILNYCARSPDPLFVMETWRMMEEK------EI-GLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 82 ----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 149 (764)
+ .+.....+..+...+...|+++.|.+.+++..+. +. +.....+..+...|...|++++|+++|++..
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 1223456888889999999999999999998875 22 2345678889999999999999999999886
Q ss_pred hhc-----C-CCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc-------CCCCChh-------hHHHHHHHHHhccCh
Q 004273 150 ERY-----G-IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR-------MVGKNEV-------TYTELLKLAVWQKNL 209 (764)
Q Consensus 150 ~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~-------t~~~ll~~~~~~~~~ 209 (764)
+.. + .+....++..+...|.+.|++++|...|+.+.+. ...+... .+..+...+...+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 531 1 1223457888999999999999999999998763 1122222 122223334445566
Q ss_pred hHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.++...+.......+.+..++..+..+|.+.|++++|.+.|++..+
T Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677777777666667788899999999999999999999999887
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.17 E-value=8e-10 Score=117.98 Aligned_cols=211 Identities=12% Similarity=-0.023 Sum_probs=176.4
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH-HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHH
Q 004273 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL-EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCL 181 (764)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 181 (764)
++.+++.++...... +.+...+..+...|...|++ ++|++.|++..+.+ +.+...|..+...|.+.|++++|+..|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556667777655543 44778889999999999999 99999999997654 234678999999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhc---------cChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc--------CCHH
Q 004273 182 DLMDSRMVGKNEVTYTELLKLAVWQ---------KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL--------RDLK 244 (764)
Q Consensus 182 ~~m~~~g~~p~~~t~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 244 (764)
+...+. .|+..++..+...+... |++++|.+.+++..+..+.+...|..+..+|... |+++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999986 47778888888899999 9999999999999998888999999999999999 9999
Q ss_pred HHHHHHHHHHHhhhcc---cchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 245 SAYETLQHMVALAMMG---KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 245 ~A~~~~~~m~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
+|...|++..+ +.| +. ...|..+...|...|++++|.+.|++..+
T Consensus 239 ~A~~~~~~al~--~~p~~~~~------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEK--VDRKASSN------------------------------PDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHH--HCGGGGGC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcccC------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999998 445 32 15899999999999999999999999987
Q ss_pred CCCCCC-cccHHHHHHHHHhcCChhHHHHHHH
Q 004273 322 LGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLK 352 (764)
Q Consensus 322 ~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~ 352 (764)
.. |+ ...+..+...+...|++++|...+.
T Consensus 287 l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 287 LD--PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hC--CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 53 43 4456777777777887777776543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-09 Score=109.69 Aligned_cols=305 Identities=9% Similarity=-0.010 Sum_probs=195.4
Q ss_pred hhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHH---------HHHHHhhhccCCCCcc
Q 004273 18 CKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRAS---------HLLLNLGHAHHSLGAD 88 (764)
Q Consensus 18 ~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~---------~~~~~~~~~~~~~~~~ 88 (764)
.+.++.++|. .+.+++. ..+..+ +-+++...+......+...-.+....+. +.++.+.....+.+..
T Consensus 23 i~~~~~~~A~-~l~~~i~--~~~~~~-~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 98 (378)
T 3q15_A 23 IRQFSVPDAE-ILKAEVE--QDIQQM-EEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGL 98 (378)
T ss_dssp HHTTCHHHHH-HHHHHHH--HHGGGB-CCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHH
T ss_pred HHHcCHHHHH-HHHHHHH--HHHHHh-cccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccH
Confidence 7788899998 6655441 222222 1223322111111122222234444444 6666665432111111
Q ss_pred ----hHHHHHHHhhCCCChhHHHHHHHHHHHcCc----c-ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC---
Q 004273 89 ----DFFHILNYCARSPDPLFVMETWRMMEEKEI----G-LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP--- 156 (764)
Q Consensus 89 ----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 156 (764)
.+......+...|+++.|+..+++..+.-. . ....++..+...|...|+++.|...+++..+...-.+
T Consensus 99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 123344556688999999999999886421 1 1345788899999999999999999988754322112
Q ss_pred --ChhhhHHHHHHHhccCCHHHHHHHHHHHHhc----CCC-CChhhHHHHHHHHHhccChhHHHHHHHHHHc-----cCC
Q 004273 157 --ILPVYNSFLGACAKLHSMVHANLCLDLMDSR----MVG-KNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-----HYS 224 (764)
Q Consensus 157 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~ 224 (764)
...+++.+...|...|++++|++.|+...+. +-. ....++..+...+...|++++|.+.++...+ +.+
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 2347888999999999999999999887653 111 1234677788889999999999999999987 555
Q ss_pred CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHH
Q 004273 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304 (764)
Q Consensus 225 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 304 (764)
....++..+..+|.+.|++++|...+++..+.......+.. ...++.+...+.
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------~~~~~~l~~ly~ 311 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY---------------------------KELFLFLQAVYK 311 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH---------------------------HHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH---------------------------HHHHHHHHHHHh
Confidence 56788999999999999999999999999874322111000 135566666777
Q ss_pred ccCC---HHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004273 305 RTQN---SGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 305 ~~g~---~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~ 356 (764)
..++ +.+|+..+++ .+..|+. ..+..+...+...|++++|...|+...+
T Consensus 312 ~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 312 ETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777 6666666665 2222222 2344556666677777777777766543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=3e-08 Score=102.55 Aligned_cols=168 Identities=14% Similarity=0.031 Sum_probs=95.6
Q ss_pred HHHHHHhccChhHHHHHHHHHHccCC-----CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccccccc
Q 004273 199 LLKLAVWQKNLSAVHEIWEDYIKHYS-----LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLR 273 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 273 (764)
+...+...|++++|...++......+ ....++..+...+...|++++|...+++..+....++.+..
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~-------- 212 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD-------- 212 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH--------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchh--------
Confidence 33344444555555555444443111 12245666777888889999999998888764222221000
Q ss_pred ccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHhcCChhHHHHH
Q 004273 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS---HTYDGFIRAIVSDRGLRNGMEV 350 (764)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~~~~~~a~~~ 350 (764)
.........+..+...|++++|...+++.......+.. ..+..+...+...|++++|...
T Consensus 213 -----------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 275 (373)
T 1hz4_A 213 -----------------WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIV 275 (373)
T ss_dssp -----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00001113344577899999999999887654321111 1345566777788888888888
Q ss_pred HHHHHHC----CCCCch-hHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004273 351 LKIMQQN----NLKPQD-STIATLSVECSKALELDLAEALLDQISR 391 (764)
Q Consensus 351 ~~~m~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 391 (764)
++..... |..++. .++..+...+...|+.++|...+++...
T Consensus 276 l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 276 LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8776542 221122 1344555666667777777766666543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-09 Score=96.46 Aligned_cols=163 Identities=11% Similarity=-0.095 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 131 (764)
...+..+...+...|++++|+..|+++.... +.+...+..+...+...|+++.|.+.++.+.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4445555666777777777777777776554 3344556666666666677777777777666653 3345566666666
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhH
Q 004273 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++...+... .+..++..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665432 23344555555556666666666666665554321 123333344444444444444
Q ss_pred HHHHHHHH
Q 004273 212 VHEIWEDY 219 (764)
Q Consensus 212 a~~~~~~~ 219 (764)
|.+.++.+
T Consensus 163 A~~~~~~~ 170 (186)
T 3as5_A 163 ALPHFKKA 170 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.1e-08 Score=101.74 Aligned_cols=236 Identities=7% Similarity=-0.044 Sum_probs=151.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHH
Q 004273 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL 311 (764)
Q Consensus 232 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 311 (764)
.....+...|+++.|...|++..+........ .....++..+...|...|+++.
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------~~~a~~~~~lg~~y~~~~~~~~ 159 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDD--------------------------IEKAEFHFKVAEAYYHMKQTHV 159 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH--------------------------HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh--------------------------HHHHHHHHHHHHHHHHcCCcHH
Confidence 34445677888888888888877632211110 0012577788888888888888
Q ss_pred HHHHHHHHHHCCC-----CC-CcccHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CchhHHHHHHHHHHhcCCHH
Q 004273 312 AEQLMLQMQSLGL-----QP-SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN----NLK-PQDSTIATLSVECSKALELD 380 (764)
Q Consensus 312 a~~~~~~m~~~g~-----~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~ 380 (764)
|...+.+..+... .+ ...+++.+...+...|++++|...|.+..+. +-. ....++..+...|...|+++
T Consensus 160 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 160 SMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 8888887764210 11 1345667777888888888888888877653 111 12235667888899999999
Q ss_pred HHHHHHHHHhh-----CC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCchhhchhh
Q 004273 381 LAEALLDQISR-----CT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMF 452 (764)
Q Consensus 381 ~A~~~~~~~~~-----~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 452 (764)
+|...|++... .. ...++..+...|.+.|++++|...+++..+ ....+...+
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------- 299 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY-------------------- 299 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH--------------------
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH--------------------
Confidence 99999988766 32 344567788889999999999999998876 211111111
Q ss_pred hhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCc---HHHHHHHHHhcCCCCCh-hhHHHHHHHHHHcCChhHH
Q 004273 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGT-PTYNTVLHSLVEAQESHRA 528 (764)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A 528 (764)
...+..+...|...++ +.+|+..+++....++. ..+..+...|...|++++|
T Consensus 300 ------------------------~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A 355 (378)
T 3q15_A 300 ------------------------KELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQA 355 (378)
T ss_dssp ------------------------HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHH
Confidence 1112223344555555 66777777665333332 2455667777777777777
Q ss_pred HHHHHHHHh
Q 004273 529 MEIFKQMKT 537 (764)
Q Consensus 529 ~~l~~~m~~ 537 (764)
...|++..+
T Consensus 356 ~~~~~~al~ 364 (378)
T 3q15_A 356 AAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-08 Score=93.41 Aligned_cols=163 Identities=10% Similarity=-0.055 Sum_probs=97.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44455555666666666666666554321 2344455666666666666666666666665542 12445555555666
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccC
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPL 283 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (764)
...|++++|.+.++.+.+..+.+...+..+..++...|++++|...++++.+. .|+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~--------------------- 143 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNE--------------------- 143 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC---------------------
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--Cccc---------------------
Confidence 66666666666666666655556666666666666677777777777666652 2222
Q ss_pred CcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 284 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
...|..+...+...|++++|...+++..+
T Consensus 144 ---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 144 ---------GKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp ---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13566666666667777777766666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-09 Score=107.37 Aligned_cols=236 Identities=11% Similarity=-0.055 Sum_probs=163.3
Q ss_pred HhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhc------cC-CCCcch
Q 004273 17 FCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA------HH-SLGADD 89 (764)
Q Consensus 17 ~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~ 89 (764)
....|++++|+ .++++.. +.+....+..+......+..+...+...|++++|+..|++.... +. +.....
T Consensus 11 ~~~~~~~~~A~-~~~~~al--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (283)
T 3edt_B 11 SSGLVPRGSAV-PLCKQAL--EDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAAT 87 (283)
T ss_dssp --CCSCSSSHH-HHHHHHH--HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred cCCCCCHHHHH-HHHHHHH--HHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence 45678889998 5555543 44444544454455667778888899999999999999998754 21 223456
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcC-------ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc-----C-CCC
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKE-------IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY-----G-IYP 156 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~ 156 (764)
+..+..++...|+++.|.+.+++..+.. .+....++..+...|...|++++|...|++..+.. + .+.
T Consensus 88 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 8889999999999999999999988751 13346688899999999999999999999886530 1 122
Q ss_pred ChhhhHHHHHHHhccCCHHHHHHHHHHHHhc-------CCCCChhhHHHHHH-HHHhccChh------HHHHHHHHHHcc
Q 004273 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSR-------MVGKNEVTYTELLK-LAVWQKNLS------AVHEIWEDYIKH 222 (764)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~-~~~~~~~~~------~a~~~~~~~~~~ 222 (764)
...++..+...|.+.|++++|...|+...+. ...+....+...+. .....+... .+...+......
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC
Confidence 3457888999999999999999999988763 12333333333333 333323322 222222222222
Q ss_pred CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 223 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.+....++..+..+|...|++++|..+|++..+
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344456788999999999999999999998875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.03 E-value=5e-08 Score=100.87 Aligned_cols=268 Identities=9% Similarity=-0.035 Sum_probs=177.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CCh----hhHHH
Q 004273 128 MMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KNE----VTYTE 198 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ 198 (764)
....+...|++++|...+++.....+. .+. .+++.+...+...|++++|...+++....... ++. .++..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 334455667777777777766543211 111 13455566667777777777777766542111 111 22445
Q ss_pred HHHHHHhccChhHHHHHHHHHHcc-----CC--C-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccc
Q 004273 199 LLKLAVWQKNLSAVHEIWEDYIKH-----YS--L-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 270 (764)
+...+...|++++|.+.++...+. .+ | ....+..+..++...|++++|...+++..+........
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------- 171 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ------- 171 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG-------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH-------
Confidence 556677788888888888777652 11 2 34567778889999999999999999988733221110
Q ss_pred cccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHH-----HHHHHHHhcCCh
Q 004273 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYD-----GFIRAIVSDRGL 344 (764)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~-----~li~~~~~~~~~ 344 (764)
. ...+|..+...+...|++++|...+++.......++. ..+. .....+...|++
T Consensus 172 ------------------~--~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 172 ------------------Q--QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp ------------------G--GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ------------------H--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 0 0147888899999999999999999998754222222 1122 222346789999
Q ss_pred hHHHHHHHHHHHCCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-------C-CcchHHHHHHHhcCCCHHH
Q 004273 345 RNGMEVLKIMQQNNLKPQ---DSTIATLSVECSKALELDLAEALLDQISRCT-------N-PKPFSAFLAACDTMDKPER 413 (764)
Q Consensus 345 ~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~-~~~~~~li~~~~~~g~~~~ 413 (764)
++|...++........+. ...+..+...+...|++++|...++...... + ...+..+..++...|++++
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 311 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 311 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHH
Confidence 999999998876543221 2245677888999999999999998875431 1 1245556777889999999
Q ss_pred HHHHHHHHhh
Q 004273 414 AIKIFAKMRQ 423 (764)
Q Consensus 414 a~~l~~~m~~ 423 (764)
|...+++...
T Consensus 312 A~~~l~~al~ 321 (373)
T 1hz4_A 312 AQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=8e-09 Score=114.71 Aligned_cols=166 Identities=8% Similarity=-0.006 Sum_probs=113.0
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+..+|+.|...|.+.|++++|++.|++..+.+ +-+..+|+.|..+|.+.|++++|+..|++..+.... +..+|..+-
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34566677777777777777777777665543 223456666777777777777777777776664322 455666666
Q ss_pred HHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCC
Q 004273 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
.++...|++++|.+.|++..+-.+.+..+++.+..+|.+.|++++|++.|++..+ +.|+.
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~------------------ 144 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDF------------------ 144 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCC------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC------------------
Confidence 7777777777777777777766666777777777777777777777777777776 45554
Q ss_pred ccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
...|..+...+...|++++|.+.+++..+
T Consensus 145 ------------~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 145 ------------PDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp ------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred ------------hHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 14677777777777777777777766543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=9.9e-09 Score=113.97 Aligned_cols=164 Identities=11% Similarity=-0.020 Sum_probs=95.4
Q ss_pred chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHH
Q 004273 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 167 (764)
..|+.+..++.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++..+.+ +-+...|+.+..+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 345555555555666666666666655543 2344555566666666666666666666554432 1233455556666
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHH
Q 004273 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
|.+.|++++|++.|++..+.... +..+|..+..++...|++++|.+.|++..+..+.+...+..+..+|...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 66666666666666665554221 34455556666666666666666666666655556666666666666667766666
Q ss_pred HHHHHHHH
Q 004273 248 ETLQHMVA 255 (764)
Q Consensus 248 ~~~~~m~~ 255 (764)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-08 Score=101.17 Aligned_cols=160 Identities=10% Similarity=-0.108 Sum_probs=104.6
Q ss_pred HHhcCCcchHHHHHHHhhhc-------cCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHc------Cc-cccHHHHHH
Q 004273 62 ALCRGERSRASHLLLNLGHA-------HHSLGADDFFHILNYCARSPDPLFVMETWRMMEEK------EI-GLNNKCYLL 127 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 127 (764)
....|++++|+..|++..+. +.+.....+..+...+...|+++.|.+.+++..+. +- +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34567788888877776542 11223445777777888888888888888887764 21 234557777
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhc-----C-CCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc------CCCC-Chh
Q 004273 128 MMQALCKGGYLEEASNLIYFLGERY-----G-IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR------MVGK-NEV 194 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~ 194 (764)
+...|...|++++|...|++..+.. . .+....++..+...|...|++++|+..|+...+. +-.| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 8888888888888888888775431 1 1223456777777888888888888888777654 1112 234
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHc
Q 004273 195 TYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
++..+...+...|++++|.+.++...+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666777777777777766654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.2e-08 Score=94.26 Aligned_cols=198 Identities=9% Similarity=-0.133 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 132 (764)
..+......+...|++++|+..|++..+...+++...+..+..++...|+++.|++.+++..+.+ +.+...|..+...|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 55666777888999999999999999887743677777778888999999999999999999875 44677889999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCCh-----hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHH
Q 004273 133 CKGGYLEEASNLIYFLGERYGIYPIL-----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN---EVTYTELLKLAV 204 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~ 204 (764)
...|++++|+..|++..+..+-.+.. ..|..+...+.+.|++++|+..|+...+. .|+ ...+..+...+.
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHH
Confidence 99999999999999987654221111 45777888888999999999999999875 455 345556666665
Q ss_pred hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
..| ..+++.+......+...|.... ....+.+++|...|++..+ +.|+.
T Consensus 165 ~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~ 213 (228)
T 4i17_A 165 NNG-----ADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNR 213 (228)
T ss_dssp HHH-----HHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHH-----HHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCC
Confidence 433 3445555544444455554443 3345678999999999998 56655
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.9e-08 Score=92.90 Aligned_cols=183 Identities=10% Similarity=-0.104 Sum_probs=99.6
Q ss_pred hhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcC
Q 004273 38 RTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117 (764)
Q Consensus 38 r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 117 (764)
..|...+...|.+....+..+...+...|++++|+..|++..+.+ +-+...+..+..++...|+++.|++.+++..+..
T Consensus 28 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 28 EKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 445555555552223333345566666777777777777766554 2334456666666777777777777777776653
Q ss_pred ccccH-------HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC---hhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004273 118 IGLNN-------KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI---LPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 118 ~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+.+. ..|..+...+...|++++|++.|++..+. .|+ ...|..+...|...| ..+++.+...
T Consensus 107 -p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~ 177 (228)
T 4i17_A 107 -PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLGVLFYNNG-----ADVLRKATPL 177 (228)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGG
T ss_pred -CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhc
Confidence 2233 34566666666777777777777766543 233 345555555554433 2333444433
Q ss_pred CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHH
Q 004273 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233 (764)
Q Consensus 188 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 233 (764)
+ ..+...|.... ....+.+++|...++...+..|.+..+...+
T Consensus 178 ~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 220 (228)
T 4i17_A 178 A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ 220 (228)
T ss_dssp T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 2 11233333322 2234556666666666666555454444333
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-07 Score=90.82 Aligned_cols=182 Identities=12% Similarity=-0.031 Sum_probs=140.9
Q ss_pred HHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004273 71 ASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI-GLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 71 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 149 (764)
|+..|+++...+ +++...+..+..++...|++++|++++.+.+..|- .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 788898887765 45556666778888889999999999999877652 2366788889999999999999999999996
Q ss_pred hhcCCCC-----ChhhhHHHHHH--HhccC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHH
Q 004273 150 ERYGIYP-----ILPVYNSFLGA--CAKLH--SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 150 ~~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
+. .| +..+...|..+ ....| +..+|..+|+++.+. .|+..+...++.++...|++++|.+.++.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54 45 24455555555 33334 899999999999775 4554455566668999999999999999877
Q ss_pred cc----------CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 221 KH----------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 221 ~~----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
+. .+.++.++..+|......|+ .|.++++++.+ ..|+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCC
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCC
Confidence 64 26678888777777777787 88999999998 66665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-07 Score=92.21 Aligned_cols=185 Identities=7% Similarity=-0.150 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc---CCCCC-hhhhHHHHHHHhccCCHHHHH
Q 004273 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY---GIYPI-LPVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~~~~~~li~~~~~~g~~~~A~ 178 (764)
++.|.+.|++. ...|...|++++|...|++..+.. +-+++ ..+|+.+..+|.+.|++++|+
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 66666666554 334556677777777766554321 11111 235566666666666666666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc-CCHHHHHHHHHHHHHhh
Q 004273 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL-RDLKSAYETLQHMVALA 257 (764)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~ 257 (764)
..|+...+. +...|+...+ ..+++.+..+|... |++++|+..|++..+..
T Consensus 98 ~~~~~Al~l---------------~~~~g~~~~~--------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~ 148 (292)
T 1qqe_A 98 DSLENAIQI---------------FTHRGQFRRG--------------ANFKFELGEILENDLHDYAKAIDCYELAGEWY 148 (292)
T ss_dssp HHHHHHHHH---------------HHHTTCHHHH--------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------HHHcCCHHHH--------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 666554431 1111222211 23566777888885 99999999999988732
Q ss_pred hcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc------cH
Q 004273 258 MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH------TY 331 (764)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------t~ 331 (764)
...+.. .....+|+.+...+.+.|++++|+..|++..+........ +|
T Consensus 149 ~~~~~~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 149 AQDQSV--------------------------ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HhCCCh--------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 211110 0001478889999999999999999999998864322221 35
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 004273 332 DGFIRAIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 332 ~~li~~~~~~~~~~~a~~~~~~m~~~ 357 (764)
..+..++...|++++|...|++..+.
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56666777888888888888887764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-07 Score=79.61 Aligned_cols=129 Identities=13% Similarity=-0.012 Sum_probs=85.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...|+.+...+. .+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHH
Confidence 34555666666677777777766665432 22445566666666666777777777766665432 2445566666666
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
...|++++|.+.++.+.+..+.+...+..+..++.+.|++++|...|+++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777777666666667777777788888888888888888776
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-07 Score=91.77 Aligned_cols=187 Identities=11% Similarity=0.036 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCC---cchHHHHHHHhhCCCChhHHHHHHHHHHHcCc--cccHHHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLG---ADDFFHILNYCARSPDPLFVMETWRMMEEKEI--GLNNKCYLL 127 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 127 (764)
..+......+...|++++|+..|+++.... +-+ ...+..+..++.+.|+++.|+..|+...+... +.....+..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 444455677888899999999999888765 222 45577777888888889999999888888631 122456667
Q ss_pred HHHHHHc--------cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 004273 128 MMQALCK--------GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL 199 (764)
Q Consensus 128 li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (764)
+..++.. .|++++|+..|+++.+..+- +......+.. +...... -...+..+
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~--------------~~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQK--------------IRELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHH--------------HHHHHHH----HHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHH--------------HHHHHHH----HHHHHHHH
Confidence 7777777 88888888888888765421 2122222110 1110000 00113445
Q ss_pred HHHHHhccChhHHHHHHHHHHccCCC---CHHhHHHHHHHhhcc----------CCHHHHHHHHHHHHHhhhcccc
Q 004273 200 LKLAVWQKNLSAVHEIWEDYIKHYSL---SIFSLRKFVWSFTRL----------RDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
...+...|++++|...|+.+.+..+. ....+..+..+|... |++++|...|+++.+ ..|+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~ 228 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDS 228 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCC
Confidence 55666777777777777777765433 344666667777655 888889999988887 44544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.79 E-value=7.3e-07 Score=86.44 Aligned_cols=250 Identities=8% Similarity=-0.066 Sum_probs=164.0
Q ss_pred HHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHH
Q 004273 14 ADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHI 93 (764)
Q Consensus 14 ~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 93 (764)
+.-.+-.|.+..++ .-.. ++.|+.......-+.+++...|+++... ...|....+..+
T Consensus 20 ikn~fy~G~yq~~i-~e~~------------~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~l 77 (310)
T 3mv2_B 20 IKQNYYTGNFVQCL-QEIE------------KFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLY 77 (310)
T ss_dssp HHHHHTTTCHHHHT-HHHH------------TSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHH
T ss_pred HHHHHHhhHHHHHH-HHHH------------hcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHH
Confidence 44455577777777 2111 1222222233334568899999887531 112332233333
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC
Q 004273 94 LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 173 (764)
.. |...+ |+..+++..+.+ +++...+..+..++...|++++|++++.+......-.-+...+..++..+.+.|+
T Consensus 78 a~-~~~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r 151 (310)
T 3mv2_B 78 VQ-FLDTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN 151 (310)
T ss_dssp HH-HHTTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC
T ss_pred HH-Hhccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC
Confidence 33 33322 678888887765 4566666788899999999999999999875432111255678889999999999
Q ss_pred HHHHHHHHHHHHhcCCCC-----ChhhHHHHHHH--HHhcc--ChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHH
Q 004273 174 MVHANLCLDLMDSRMVGK-----NEVTYTELLKL--AVWQK--NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 244 (764)
.+.|.+.++.|.+. .| +..+...|..+ ....| ++..|..+|+++.... |+..+...++.++.+.|+++
T Consensus 152 ~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-p~~~~~~lLln~~~~~g~~~ 228 (310)
T 3mv2_B 152 VSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-PTWKTQLGLLNLHLQQRNIA 228 (310)
T ss_dssp HHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-CSHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHcCCHH
Confidence 99999999999885 56 35666666666 33334 8999999999987654 44333344455899999999
Q ss_pred HHHHHHHHHHHhhh--------cccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHH
Q 004273 245 SAYETLQHMVALAM--------MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLM 316 (764)
Q Consensus 245 ~A~~~~~~m~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 316 (764)
+|.+.++.+.+... .|+.+ .+.-.+|......|+ .|.+++
T Consensus 229 eAe~~L~~l~~~~p~~~~k~~~~p~~~------------------------------~~LaN~i~l~~~lgk--~a~~l~ 276 (310)
T 3mv2_B 229 EAQGIVELLLSDYYSVEQKENAVLYKP------------------------------TFLANQITLALMQGL--DTEDLT 276 (310)
T ss_dssp HHHHHHHHHHSHHHHTTTCHHHHSSHH------------------------------HHHHHHHHHHHHTTC--TTHHHH
T ss_pred HHHHHHHHHHHhcccccccccCCCCCH------------------------------HHHHHHHHHHHHhCh--HHHHHH
Confidence 99999997765311 24331 355445544555566 788888
Q ss_pred HHHHHCCCCCCc
Q 004273 317 LQMQSLGLQPSS 328 (764)
Q Consensus 317 ~~m~~~g~~p~~ 328 (764)
.++.+. .|+.
T Consensus 277 ~qL~~~--~P~h 286 (310)
T 3mv2_B 277 NQLVKL--DHEH 286 (310)
T ss_dssp HHHHHT--TCCC
T ss_pred HHHHHh--CCCC
Confidence 888875 3444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-07 Score=93.38 Aligned_cols=205 Identities=7% Similarity=-0.025 Sum_probs=149.9
Q ss_pred hHHHHHHHHHHHHhcCCcchHHHHHHHhhhc----cCCCC-cchHHHHHHHhhCCCChhHHHHHHHHHHHcCc---cc--
Q 004273 51 ISKATQMQIVDALCRGERSRASHLLLNLGHA----HHSLG-ADDFFHILNYCARSPDPLFVMETWRMMEEKEI---GL-- 120 (764)
Q Consensus 51 ~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~-- 120 (764)
....+......|...|++++|+..|++.... +.++. ...|+.+..+|...|+++.|+..+++..+... .+
T Consensus 36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3344555566788899999999999987654 21111 45688999999999999999999998876421 11
Q ss_pred cHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh-
Q 004273 121 NNKCYLLMMQALCKG-GYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV- 194 (764)
Q Consensus 121 ~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 194 (764)
-..+++.+...|... |++++|+..|++..+...-..+ ..+++.+...+.+.|++++|+..|+...+..+.....
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence 135788899999996 9999999999987653211111 3468889999999999999999999999865433221
Q ss_pred -----hHHHHHHHHHhccChhHHHHHHHHHHccCCCCH-----HhHHHHHHHhh--ccCCHHHHHHHHHHHHH
Q 004273 195 -----TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI-----FSLRKFVWSFT--RLRDLKSAYETLQHMVA 255 (764)
Q Consensus 195 -----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 255 (764)
+|..+..++...|++++|...++...+-.+... ..+..++.++. ..++++.|+..|+.+.+
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 466777788899999999999999987432221 23455566664 45678888888877654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-07 Score=91.43 Aligned_cols=80 Identities=6% Similarity=-0.039 Sum_probs=60.8
Q ss_pred hhhccccCCchhhh--HHHHHHHHHHHHhcCCcchHHHHHHHhhhccC-C-CCcchHHHHHHHhhC--------CCChhH
Q 004273 38 RTLTTTMGLNEESI--SKATQMQIVDALCRGERSRASHLLLNLGHAHH-S-LGADDFFHILNYCAR--------SPDPLF 105 (764)
Q Consensus 38 r~~~~~~~~~p~~~--~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~-~-~~~~~~~~ll~~~~~--------~~~~~~ 105 (764)
..|...+...|+.. ...+..+...+...|++++|+..|++..+... . .....+..+..++.. .|+++.
T Consensus 36 ~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 115 (261)
T 3qky_A 36 EYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRK 115 (261)
T ss_dssp HHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHH
Confidence 56666777666642 44566677889999999999999999988752 1 123456677777777 899999
Q ss_pred HHHHHHHHHHcC
Q 004273 106 VMETWRMMEEKE 117 (764)
Q Consensus 106 a~~~~~~~~~~~ 117 (764)
|+..|+++.+..
T Consensus 116 A~~~~~~~l~~~ 127 (261)
T 3qky_A 116 AIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHC
Confidence 999999999874
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.1e-07 Score=78.57 Aligned_cols=130 Identities=12% Similarity=-0.008 Sum_probs=112.2
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhc
Q 004273 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 239 (764)
.|..+...+...|++++|..+|+.+.+... .+..++..+...+...|++++|...++.+.+..+.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 567788899999999999999999987643 3667788888889999999999999999998878888899999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 004273 240 LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319 (764)
Q Consensus 240 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 319 (764)
.|++++|.+.++++.+. .|+. ...+..+...+.+.|++++|...|+++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRS------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTC------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCC------------------------------hHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99999999999999873 3332 147888999999999999999999998
Q ss_pred HHC
Q 004273 320 QSL 322 (764)
Q Consensus 320 ~~~ 322 (764)
...
T Consensus 130 ~~~ 132 (136)
T 2fo7_A 130 LEL 132 (136)
T ss_dssp HHH
T ss_pred Hcc
Confidence 764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.74 E-value=8.8e-07 Score=83.88 Aligned_cols=189 Identities=10% Similarity=-0.060 Sum_probs=115.9
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCcc-c-cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hhhHH
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIG-L-NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL-PVYNS 163 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ 163 (764)
+..+..+...+.+.|+++.|+..|+.+.+.... + ....+..+..+|.+.|++++|+..|+++.+..+-.+.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555566677778888888888888775311 1 13466677778888888888888888877654322221 13333
Q ss_pred HHHHHhc------------------cCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhccChhHHHHHHHHHHccCC
Q 004273 164 FLGACAK------------------LHSMVHANLCLDLMDSRMVGKNEV-TYTELLKLAVWQKNLSAVHEIWEDYIKHYS 224 (764)
Q Consensus 164 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 224 (764)
+..++.+ .|+.++|+..|+.+.+. .|+.. ++....... .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHH-----
Confidence 4444433 35566666666666554 23222 111111000 000000
Q ss_pred CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHH
Q 004273 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304 (764)
Q Consensus 225 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 304 (764)
......+...|.+.|+++.|+..|+++.+ ..|+.+.. ...+..+..++.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~---------------------------~~a~~~l~~~~~ 195 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQAT---------------------------RDALPLMENAYR 195 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHH---------------------------HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCcc---------------------------HHHHHHHHHHHH
Confidence 00113456678899999999999999988 44443111 136888999999
Q ss_pred ccCCHHHHHHHHHHHHHCC
Q 004273 305 RTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 305 ~~g~~~~a~~~~~~m~~~g 323 (764)
+.|++++|.+.++.+...+
T Consensus 196 ~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 196 QMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HTTCHHHHHHHHHHHHHCC
T ss_pred HcCCcHHHHHHHHHHHhhC
Confidence 9999999999999998864
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.71 E-value=9.5e-08 Score=86.60 Aligned_cols=167 Identities=10% Similarity=-0.100 Sum_probs=76.6
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccC
Q 004273 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHH 83 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~ 83 (764)
|.....+...+..+...|++++|. ..|...+...|+. ...+..+...+...|++++|+..|++.....
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~----------~~~~~al~~~P~~-~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~- 70 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQAL----------NVIQTLSDELQSR-GDVKLAKADCLLETKQFELAQELLATIPLEY- 70 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHH----------HHHHTSCHHHHTS-HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHHCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-
Confidence 334444555556666666666666 3333334444443 2333444455556666666666666655543
Q ss_pred CCCcchHHHHHHH-hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004273 84 SLGADDFFHILNY-CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 84 ~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 162 (764)
|++..+..+... +...+....|+..+++..+.. +.+...+..+...+...|++++|...|+++.+..+-..+...+.
T Consensus 71 -p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~ 148 (176)
T 2r5s_A 71 -QDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKK 148 (176)
T ss_dssp -CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHH
T ss_pred -CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHH
Confidence 232221111111 111111223455555555442 22344555555555555555555555555543321111233455
Q ss_pred HHHHHHhccCCHHHHHHHHHHH
Q 004273 163 SFLGACAKLHSMVHANLCLDLM 184 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m 184 (764)
.+...+...|+.++|...|++.
T Consensus 149 ~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 149 TFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHH
Confidence 5555555555555555555443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.2e-07 Score=103.82 Aligned_cols=158 Identities=14% Similarity=0.003 Sum_probs=137.0
Q ss_pred hCCCChhHHHHHHHHHH--------HcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004273 98 ARSPDPLFVMETWRMME--------EKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 98 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
...|++++|++.+++.. +.. +.+...+..+...|...|++++|++.|++..+.+ +.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 67899999999999998 432 4566788899999999999999999999997654 335668899999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHH
Q 004273 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET 249 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 249 (764)
+.|++++|+..|++..+..+. +...+..+-.++...|++++ .+.|++..+..+.+...+..+..++.+.|++++|...
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999986432 56778888889999999999 9999999998889999999999999999999999999
Q ss_pred HHHHHHhhhcccc
Q 004273 250 LQHMVALAMMGKL 262 (764)
Q Consensus 250 ~~~m~~~~~~~~~ 262 (764)
|+++.+ ..|+.
T Consensus 557 ~~~al~--l~P~~ 567 (681)
T 2pzi_A 557 LDEVPP--TSRHF 567 (681)
T ss_dssp HHTSCT--TSTTH
T ss_pred HHhhcc--cCccc
Confidence 999887 45543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-07 Score=105.57 Aligned_cols=174 Identities=7% Similarity=-0.116 Sum_probs=146.9
Q ss_pred HhcCCcchHHHHHHHhh--------hccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004273 63 LCRGERSRASHLLLNLG--------HAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 63 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 134 (764)
...|++++|++.+++.. +.. +.+...+..+..++...|+++.|++.|++..+.+ +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999988 433 4556678888889999999999999999999875 4577889999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHH
Q 004273 135 GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214 (764)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 214 (764)
.|++++|+..|++..+.+ +.+...|..+..+|.+.|++++ +..|+...+..+. +...|..+..++...|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999987654 2355688999999999999999 9999999886433 66788889999999999999999
Q ss_pred HHHHHHccCCCCHHhHHHHHHHhhccCC
Q 004273 215 IWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.|++..+..+.+...+..+..++...++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999998888888899999999877665
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-05 Score=83.37 Aligned_cols=125 Identities=10% Similarity=0.086 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004273 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS-IIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
..|-..+....+.++.+.|..+|++. ... .++...|......-. ..++.+.|..+|+...+.. +-++..+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 35666666666677788888888877 321 123334432111111 2236888888888777642 2234456667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004273 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
..+.|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777888888888888752 2466777777766777888888777777764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.9e-07 Score=88.13 Aligned_cols=168 Identities=6% Similarity=-0.118 Sum_probs=137.4
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 004273 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE 198 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 198 (764)
+.+...+..+...+...|++++|...|++..+.+ +-+...+..+...+.+.|++++|...|+..... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 5566677788889999999999999999997654 335568888999999999999999999998775 455443333
Q ss_pred HH-HHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccccccccccc
Q 004273 199 LL-KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277 (764)
Q Consensus 199 ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 277 (764)
.. ..+...++.+.|.+.++...+..|.+...+..+..++...|++++|...|.++.+. .|+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~------------- 254 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAAD------------- 254 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGG-------------
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--cccccc-------------
Confidence 22 23667888899999999999989999999999999999999999999999999984 333200
Q ss_pred CCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004273 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 320 (764)
...+..+...+...|+.++|...|++-.
T Consensus 255 ---------------~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 255 ---------------GQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp ---------------GHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ---------------chHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 1488999999999999999999888754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.9e-07 Score=89.75 Aligned_cols=205 Identities=12% Similarity=0.005 Sum_probs=120.1
Q ss_pred hcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHH
Q 004273 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143 (764)
Q Consensus 64 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 143 (764)
..|++++|.+++++..+... . .+ +...++++.|...|.+. ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~--~~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--T--SF------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--C--CS------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--c--cc------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 34667788888887765431 1 11 11146777777776654 346667788888888
Q ss_pred HHHHHhhhcCCCCC----hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCC---CC--ChhhHHHHHHHHHhccChhHHHH
Q 004273 144 LIYFLGERYGIYPI----LPVYNSFLGACAKLHSMVHANLCLDLMDSRMV---GK--NEVTYTELLKLAVWQKNLSAVHE 214 (764)
Q Consensus 144 ~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~~~~~~a~~ 214 (764)
.|.+..+...-..+ ..+|+.+...|.+.|++++|+..|++..+.-. .| -..++..+-..|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88766432110001 23667777777777888888777776554211 11 12345555556666 77777777
Q ss_pred HHHHHHccCCC------CHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccc
Q 004273 215 IWEDYIKHYSL------SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 215 ~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
.+++..+..+. ...+++.+..+|.+.|++++|+..|++..+........
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------------- 191 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY------------------------- 191 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh-------------------------
Confidence 77766653111 13456667777777777777777777776522111100
Q ss_pred hhhhHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004273 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 320 (764)
......+..+...+...|++++|...|++..
T Consensus 192 -~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 192 -PTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 0001255556666666677777777777766
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.7e-07 Score=84.48 Aligned_cols=163 Identities=7% Similarity=-0.058 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHH----------------HHHHhhCCCChhHHHHHHHHHHHcC
Q 004273 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH----------------ILNYCARSPDPLFVMETWRMMEEKE 117 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~ 117 (764)
.+......+...|++++|+..|++....+ |-++..+.. +..++.+.|+++.|+..|++.++.+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34445667888999999999999988765 223344555 6666777777777777777777764
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC--HHHHHHHHHHHHhcCCCCChhh
Q 004273 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS--MVHANLCLDLMDSRMVGKNEVT 195 (764)
Q Consensus 118 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t 195 (764)
+.+...+..+...|...|++++|+..|++..+.+ +.+..+|..+...|...|+ ...+...+..... +.|....
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 4456677777777777777777777777776543 2244566666666654433 3334444444322 1222223
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHcc
Q 004273 196 YTELLKLAVWQKNLSAVHEIWEDYIKH 222 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (764)
+...-.++...|++++|...|++..+.
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 333344455567777777777776653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.1e-06 Score=82.18 Aligned_cols=227 Identities=6% Similarity=-0.066 Sum_probs=173.6
Q ss_pred HHHHHhhcccc-hhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcC--CcchHHHHHHHhhhccCCCCcch
Q 004273 13 IADSFCKSKFH-KHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRG--ERSRASHLLLNLGHAHHSLGADD 89 (764)
Q Consensus 13 ~~~~~~~~g~~-~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~ 89 (764)
.+....+.|.. ++|+ ..+..++...|+. ...|+..-..+...+ ++++++++++.+...+ +-+...
T Consensus 38 ~~~a~~~~~e~s~~aL----------~~t~~~L~~nP~~-~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~a 105 (306)
T 3dra_A 38 LLLALMKAEEYSERAL----------HITELGINELASH-YTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQI 105 (306)
T ss_dssp HHHHHHHTTCCSHHHH----------HHHHHHHHHCTTC-HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHH
T ss_pred HHHHHHHcCCCCHHHH----------HHHHHHHHHCcHH-HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHH
Confidence 33344445544 5777 5555667888885 445666666677777 9999999999999876 344455
Q ss_pred HHHHHHHh----hCC---CChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHH--HHHHHHHHHhhhcCCCCChhh
Q 004273 90 FFHILNYC----ARS---PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLE--EASNLIYFLGERYGIYPILPV 160 (764)
Q Consensus 90 ~~~ll~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~ 160 (764)
++.--..+ ... +++++++++++.+.+.+ +.|-.+|+.-.-.+.+.|.++ ++++.++++.+.+ +.|...
T Consensus 106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sA 182 (306)
T 3dra_A 106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSA 182 (306)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHH
Confidence 55444444 334 78999999999999985 668889988888888889888 9999999998765 356667
Q ss_pred hHHHHHHHhccCC------HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccC-hhHHHHHHHHHHcc---CCCCHHhH
Q 004273 161 YNSFLGACAKLHS------MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN-LSAVHEIWEDYIKH---YSLSIFSL 230 (764)
Q Consensus 161 ~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~---~~~~~~~~ 230 (764)
|+.-...+.+.|. ++++++.++.+....+. |...|+.+-..+.+.|. .+.+..+...+.+. .+.++..+
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 7776666666666 89999999999887654 88888888777777776 44566677776653 36788999
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 231 RKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 231 ~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
..+..+|.+.|+.++|.++++.+.+
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Confidence 9999999999999999999999875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-07 Score=81.06 Aligned_cols=144 Identities=6% Similarity=-0.171 Sum_probs=89.5
Q ss_pred HHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCH
Q 004273 95 NYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM 174 (764)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 174 (764)
..+...|+++.|++.++...... +.+...+-.+...|.+.|++++|++.|++..+.+ +-+..+|..+..+|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCch
Confidence 34445566667766666655442 2234455566777777777777777777766543 23455677777777777777
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHH-HHHHHccCCCCHHhHHHHHHHhhccCC
Q 004273 175 VHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI-WEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 175 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
++|+..|+...+..+. +..++..+...+...|+++++.+. ++...+-.|.++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777777665322 455666666677777777655443 466666666667777666666655553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-05 Score=83.94 Aligned_cols=203 Identities=5% Similarity=-0.091 Sum_probs=105.7
Q ss_pred CCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCC-hhHHHHHHHHHHHc-Cc-cccHHHHHHHHHHHHc----cCCH
Q 004273 66 GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD-PLFVMETWRMMEEK-EI-GLNNKCYLLMMQALCK----GGYL 138 (764)
Q Consensus 66 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~----~g~~ 138 (764)
++.+.+..+|+.....- |+...+...+....+.++ .+....+|+..+.. |. +.+...|...+..+.. .|++
T Consensus 28 ~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 67777777777776642 566666666655544442 34456666666653 32 2345566666655432 3566
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc---cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHH
Q 004273 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAK---LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
+.+.++|++... +++. .+..+-..|.. ..+...+.+++.+ . .+.+..|..+
T Consensus 106 ~~vR~iy~rAL~---~P~~--~~~~lw~~Y~~fE~~~~~~~~~~~~~~-------------------~--~~~y~~ar~~ 159 (493)
T 2uy1_A 106 EKIRNGYMRALQ---TPMG--SLSELWKDFENFELELNKITGKKIVGD-------------------T--LPIFQSSFQR 159 (493)
T ss_dssp HHHHHHHHHHHT---SCCT--THHHHHHHHHHHHHHHCHHHHHHHHHH-------------------H--HHHHHHHHHH
T ss_pred HHHHHHHHHHHh---Chhh--hHHHHHHHHHHHHHHhccccHHHHHHH-------------------H--hHHHHHHHHH
Confidence 677777777653 1111 11222222211 1111122222111 1 1223344444
Q ss_pred HHHHHccCC-CCHHhHHHHHHHhhcc--C-----CHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCccc
Q 004273 216 WEDYIKHYS-LSIFSLRKFVWSFTRL--R-----DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287 (764)
Q Consensus 216 ~~~~~~~~~-~~~~~~~~li~~~~~~--g-----~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (764)
++.+....+ .+...|...+..-... | ..+.+..+|+++.... |..
T Consensus 160 y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~--p~~------------------------- 212 (493)
T 2uy1_A 160 YQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF--YYA------------------------- 212 (493)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTC-------------------------
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC--CCC-------------------------
Confidence 444443211 1333455544432221 1 1345667888877632 222
Q ss_pred chhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccH
Q 004273 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331 (764)
Q Consensus 288 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 331 (764)
...|-..+.-+.+.|+.+.|..+|++.... |....+
T Consensus 213 -----~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l 248 (493)
T 2uy1_A 213 -----EEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFL 248 (493)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHH
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHH
Confidence 147888888888999999999999999986 555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.6e-07 Score=81.45 Aligned_cols=160 Identities=11% Similarity=-0.020 Sum_probs=92.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHh
Q 004273 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL-AVW 205 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~ 205 (764)
.+...+...|++++|...|++..+.+ +.+...+..+...+.+.|++++|+..|+...... |+...+..+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44445555666666666666554332 2233455555556666666666666665554432 222222111111 112
Q ss_pred ccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCc
Q 004273 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
.++...+...++...+..|.+...+..+..++...|++++|...|+++.+....+..
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----------------------- 143 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD----------------------- 143 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT-----------------------
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh-----------------------
Confidence 223334566666666666667777777777888888888888888877763222211
Q ss_pred ccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004273 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 320 (764)
...+..+...+...|+.++|...|++..
T Consensus 144 -------~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 144 -------GEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp -------THHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 0367777777777888888877777654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-05 Score=79.25 Aligned_cols=232 Identities=8% Similarity=-0.058 Sum_probs=174.6
Q ss_pred HHHHHHHHHhcCCc-chHHHHHHHhhhccCCCCcchHHHHHHHhhCCC--ChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004273 55 TQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSP--DPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 55 ~~~~i~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 131 (764)
....+.+..+.|.. ++|+.+++.++..+ |-....++.--.++...+ ++++++++++.++..+ +-+..+|+.--..
T Consensus 35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~i 112 (306)
T 3dra_A 35 IMGLLLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLI 112 (306)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHH
Confidence 33445555666655 69999999999887 333344677777777777 9999999999999875 4456677765555
Q ss_pred H----Hcc---CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH--HHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004273 132 L----CKG---GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV--HANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 132 ~----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
+ ... +++++++.+++.+.+.+ +-|..+|+.-...+.+.|.++ ++++.++.+.+..+. |...|+.-...
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~l 189 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 5 444 78999999999998765 446667877777777788887 999999999987654 77777766555
Q ss_pred HHhccC------hhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHH-HHHHHHHHHHhh-hcccchhcccccccccc
Q 004273 203 AVWQKN------LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS-AYETLQHMVALA-MMGKLYINRTSEGRLRS 274 (764)
Q Consensus 203 ~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~-~~~~~~~~~~~~~~~~~ 274 (764)
....+. ++++.+.++.+....+.|..+|+.+..++.+.|.... +..+..++.+.+ ..|..
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s------------ 257 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS------------ 257 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC------------
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC------------
Confidence 666665 8889999999999999999999999999988887444 444555554422 01111
Q ss_pred cccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
...+..+...+.+.|+.++|.++++.+.+
T Consensus 258 ------------------~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 258 ------------------SFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 15788899999999999999999999886
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=6.6e-06 Score=81.46 Aligned_cols=213 Identities=8% Similarity=-0.043 Sum_probs=144.5
Q ss_pred HHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHH---HHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004273 74 LLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK---CYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~ 150 (764)
.+..+......|+..+...+...+.-.- + .++. .....+.. .+...+..+...|++++|..++++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~--~---~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPI--I---HFYE----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCT--H---HHHH----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCH--H---HHhC----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 3444443334577777777776665321 1 1221 11122222 333446778899999999999999876
Q ss_pred hcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhccChhHHHHHHHHHHc
Q 004273 151 RYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 151 ~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
.....|+. ..+..+...+...|++++|+..|+........ ++ ..+++.+...|...|++++|...++.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44333332 13445777778888999999999999874322 23 22688888899999999999999999985
Q ss_pred c---C----CCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHh
Q 004273 222 H---Y----SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294 (764)
Q Consensus 222 ~---~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (764)
. . +....++..+..+|.+.|++++|...+++..+.....+.... ...
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~--------------------------~~~ 237 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL--------------------------IGQ 237 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT--------------------------HHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH--------------------------HHH
Confidence 2 2 112347889999999999999999999998874322221100 025
Q ss_pred hHHHHHHHHHccCC-HHHHHHHHHHHHH
Q 004273 295 SFSDVIHACGRTQN-SGLAEQLMLQMQS 321 (764)
Q Consensus 295 ~~~~li~~~~~~g~-~~~a~~~~~~m~~ 321 (764)
+|..+..++.+.|+ +++|.+.|++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88899999999995 6999999988754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-06 Score=81.97 Aligned_cols=74 Identities=9% Similarity=-0.024 Sum_probs=33.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhh
Q 004273 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
+...|.+.|++++|+..|+...+..+. +...+..+...+...|++++|...|++..+..|.+..++..+..+|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 444444455555555555544443211 33344444444444444444444444444444444444444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.8e-06 Score=79.43 Aligned_cols=178 Identities=10% Similarity=-0.079 Sum_probs=138.1
Q ss_pred chHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC----CHHHHHHH
Q 004273 69 SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG----YLEEASNL 144 (764)
Q Consensus 69 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~ 144 (764)
.+|++.|++..+.| ++..+..+...+...++++.|++.|++..+.| ++..+..|...|.. + ++++|.++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 45777888877754 56677778888888899999999999988876 56677778888887 6 89999999
Q ss_pred HHHHhhhcCCCCChhhhHHHHHHHhc----cCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHh----ccChhHHHHH
Q 004273 145 IYFLGERYGIYPILPVYNSFLGACAK----LHSMVHANLCLDLMDSRMVG-KNEVTYTELLKLAVW----QKNLSAVHEI 215 (764)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~----~~~~~~a~~~ 215 (764)
|++..+. -+...+..|...|.. .+++++|+..|+...+.|.. .+..++..|-..|.. .+++++|...
T Consensus 76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9988653 256677788888877 78999999999998886532 126677777777877 7889999999
Q ss_pred HHHHHccCCCCHHhHHHHHHHhhcc-C-----CHHHHHHHHHHHHHhhh
Q 004273 216 WEDYIKHYSLSIFSLRKFVWSFTRL-R-----DLKSAYETLQHMVALAM 258 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~~ 258 (764)
|+...+. +.+...+..|..+|... | +.++|...|++..+.|.
T Consensus 152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9998775 45566778888887653 3 89999999999988653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3e-07 Score=80.53 Aligned_cols=130 Identities=6% Similarity=-0.171 Sum_probs=105.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcc
Q 004273 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
|...+...|++++|+..++...... +-+...+-.+...|.+.|++++|++.|+...+..+. +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 4556777899999999999875432 223446677889999999999999999999986433 6778899999999999
Q ss_pred ChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHH-HHHHHHhhhcccc
Q 004273 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET-LQHMVALAMMGKL 262 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~ 262 (764)
++++|...|+...+..|.++.++..+..+|.+.|+.++|.+. +++..+ +.|+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~ 133 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGS 133 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCC
Confidence 999999999999998888999999999999999998776655 588887 66665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3e-06 Score=80.10 Aligned_cols=182 Identities=10% Similarity=-0.045 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCC-C-CcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH---HHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHS-L-GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN---KCYLL 127 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ 127 (764)
..+......+...|++++|+..|+.+...... + ....+..+..++.+.|+++.|+..|+++.+... .+. ..+..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~~~ 83 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHHHH
Confidence 34555677799999999999999999886521 1 124677788899999999999999999998742 222 24555
Q ss_pred HHHHHHc------------------cCCHHHHHHHHHHHhhhcCCCCCh-hhhHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 004273 128 MMQALCK------------------GGYLEEASNLIYFLGERYGIYPIL-PVYNSFLGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 128 li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
+..++.. .|++++|+..|+++.+.. |+. ..+...... ..+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHH----------HHHHHHHH---
Confidence 5555553 578999999999998654 332 222221110 00111110
Q ss_pred CCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCH---HhHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 004273 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI---FSLRKFVWSFTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 189 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 256 (764)
.....+...+...|+++.|...|+.+.+..|.++ .++..+..+|.+.|+.++|.+.++.+...
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 0112445667889999999999999998766554 56888899999999999999999988873
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=7.5e-07 Score=87.89 Aligned_cols=167 Identities=7% Similarity=-0.142 Sum_probs=135.7
Q ss_pred CCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHH
Q 004273 84 SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163 (764)
Q Consensus 84 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 163 (764)
+.+...+..+...+.+.|+++.|.+.|++..+.. +.+...+..+...|.+.|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHH
Confidence 3445567777888889999999999999999885 456778899999999999999999999988654 345433322
Q ss_pred -HHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCC--HHhHHHHHHHhhcc
Q 004273 164 -FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS--IFSLRKFVWSFTRL 240 (764)
Q Consensus 164 -li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 240 (764)
....+.+.++.++|+..|+......+ .+...+..+...+...|++++|.+.+..+.+..+.+ ...+..++.++...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 22336677888889999999888643 266788888889999999999999999999876555 78999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 004273 241 RDLKSAYETLQHMVA 255 (764)
Q Consensus 241 g~~~~A~~~~~~m~~ 255 (764)
|+.+.|...|++...
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999888764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.1e-06 Score=84.42 Aligned_cols=203 Identities=8% Similarity=-0.086 Sum_probs=141.1
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004273 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|++++|.+++++..+..- .. .+...|++++|...|++. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHH
Confidence 4667788888888776521 11 122258899988888765 345677899999999
Q ss_pred HHHHHHhcCCCC-----ChhhHHHHHHHHHhccChhHHHHHHHHHHcc----CCC--CHHhHHHHHHHhhccCCHHHHHH
Q 004273 180 CLDLMDSRMVGK-----NEVTYTELLKLAVWQKNLSAVHEIWEDYIKH----YSL--SIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 180 ~~~~m~~~g~~p-----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
.|....+..... -..+|..+...|...|++++|...+++..+. ..+ -..+++.+..+|.. |+++.|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 998876531111 1347778888899999999999999988763 112 24578888999988 99999999
Q ss_pred HHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CC
Q 004273 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL----GL 324 (764)
Q Consensus 249 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~ 324 (764)
.|++..+........ .....+++.+...|.+.|++++|+..|++.... +.
T Consensus 137 ~~~~Al~~~~~~~~~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 137 LYQQAAAVFENEERL--------------------------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCh--------------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 999988732221110 000147888999999999999999999988753 11
Q ss_pred CCC-cccHHHHHHHHHhcCChhHHHHHHHHHH
Q 004273 325 QPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 325 ~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~ 355 (764)
.+. ..++..+..++...|++++|...|++..
T Consensus 191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 111 1144445555666688888888887776
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=96.57 Aligned_cols=165 Identities=7% Similarity=-0.124 Sum_probs=117.4
Q ss_pred cCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004273 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144 (764)
Q Consensus 65 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 144 (764)
.|++++|+..|++..+.. +-+...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477889999999887765 3456678888888888899999999999998875 45677888899999999999999999
Q ss_pred HHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---cChhHHHHHHHHHHc
Q 004273 145 IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ---KNLSAVHEIWEDYIK 221 (764)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~ 221 (764)
|++..+.. +.+...+..+...|.+.|++++|.+.|+...+... .+...+..+...+... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99887653 33566888899999999999999999999887643 2566778888888888 999999999999887
Q ss_pred cCCCCHHhHHHHH
Q 004273 222 HYSLSIFSLRKFV 234 (764)
Q Consensus 222 ~~~~~~~~~~~li 234 (764)
..+.+...+..+.
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 6665555554443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.49 E-value=9.3e-06 Score=75.82 Aligned_cols=175 Identities=9% Similarity=-0.037 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC----CHHHHHHH
Q 004273 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH----SMVHANLC 180 (764)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~ 180 (764)
+|.+.|++..+.| ++..+..|...|...+++++|+.+|++..+. + +...+..|...|.. + ++++|+..
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4678888888875 6778888899999999999999999998753 2 56678888888887 6 99999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHh----ccChhHHHHHHHHHHccCCC--CHHhHHHHHHHhhc----cCCHHHHHHHH
Q 004273 181 LDLMDSRMVGKNEVTYTELLKLAVW----QKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTR----LRDLKSAYETL 250 (764)
Q Consensus 181 ~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~----~g~~~~A~~~~ 250 (764)
|+...+.| +..++..|-..|.. .+++++|.+.|+...+..+. ++.++..|..+|.. .++.++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998765 66777777777776 88999999999999876442 37888899999988 78999999999
Q ss_pred HHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHcc-C-----CHHHHHHHHHHHHHCC
Q 004273 251 QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT-Q-----NSGLAEQLMLQMQSLG 323 (764)
Q Consensus 251 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g 323 (764)
++..+. .++. .++..|...|... | ++++|...|++..+.|
T Consensus 153 ~~A~~~--~~~~-------------------------------~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTG-------------------------------YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTT-------------------------------HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCH-------------------------------HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999874 1222 3566676666543 2 8899999998888766
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.3e-06 Score=93.80 Aligned_cols=154 Identities=10% Similarity=-0.091 Sum_probs=119.7
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004273 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 368889999999988764 4467889999999999999999999999987643 3356788999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc---CCHHHHHHHHHHHHHh
Q 004273 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL---RDLKSAYETLQHMVAL 256 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 256 (764)
.|++..+.... +...+..+...+...|++++|.+.++...+..+.+...+..+..++... |+.++|.+.+++..+.
T Consensus 79 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999886432 5678888999999999999999999999998888899999999999999 9999999999999884
Q ss_pred h
Q 004273 257 A 257 (764)
Q Consensus 257 ~ 257 (764)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.43 E-value=3e-05 Score=76.68 Aligned_cols=173 Identities=8% Similarity=-0.022 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC---CC--
Q 004273 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG---KN-- 192 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~-- 192 (764)
...+...+..+...|++++|.+.++...+.....++. ..+..+...+...|++++|+..|+........ +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3455667788899999999999998776543221111 22444666678889999999999988753211 11
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHHHHHc---cCCCC----HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhc
Q 004273 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIK---HYSLS----IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYIN 265 (764)
Q Consensus 193 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 265 (764)
..+|+.+...|...|++++|...+++..+ ..+.+ ..+++.+..+|.+.|++++|...+++..+.....+...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~- 233 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA- 233 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH-
Confidence 34778888899999999999999999884 23222 26889999999999999999999999887432211100
Q ss_pred ccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHH-HHHHHHHH
Q 004273 266 RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLA-EQLMLQMQ 320 (764)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 320 (764)
....+|..+...|.+.|++++| ...|++..
T Consensus 234 -------------------------~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 -------------------------LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp -------------------------SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 0025888899999999999999 77777654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-05 Score=74.44 Aligned_cols=141 Identities=7% Similarity=-0.043 Sum_probs=87.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCC
Q 004273 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.+...+...|++++|+..|+... .|+...+..+...+...|++++|.+.++...+..+.+...+..+..+|...|+
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 34444555566666666555442 34555555666666666666666666666665556666777777788888888
Q ss_pred HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 243 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
+++|...|++..+. .|+...... ... ........ ...|..+...+...|++++|...|++..+.
T Consensus 87 ~~~A~~~~~~al~~--~~~~~~~~~-----~~~-------~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ--LRGNQLIDY-----KIL-------GLQFKLFA--CEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHT--TTTCSEEEC-----GGG-------TBCCEEEH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh--CCCccHHHH-----HHh-------ccccCccc--hHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 88888888888773 222100000 000 00000000 147888999999999999999999999876
Q ss_pred C
Q 004273 323 G 323 (764)
Q Consensus 323 g 323 (764)
.
T Consensus 151 ~ 151 (213)
T 1hh8_A 151 K 151 (213)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-05 Score=74.35 Aligned_cols=129 Identities=11% Similarity=-0.119 Sum_probs=106.8
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHcc
Q 004273 56 QMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG 135 (764)
Q Consensus 56 ~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 135 (764)
......+...|++++|+..|++.. .++...+..+..++...|+++.|++.+++..+.. +.+...+..+...|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 344666888999999999999885 3577788999999999999999999999999875 55778899999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCC--------------ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 004273 136 GYLEEASNLIYFLGERYGIYP--------------ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMV 189 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 189 (764)
|++++|+..|++..+..+-.+ +...+..+..+|.+.|++++|...|+...+...
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999876432111 125788888999999999999999999988643
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.33 E-value=5e-06 Score=72.38 Aligned_cols=111 Identities=8% Similarity=-0.064 Sum_probs=81.6
Q ss_pred hhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcC
Q 004273 38 RTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117 (764)
Q Consensus 38 r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 117 (764)
.++...++..|+. ...+..+...+.+.|++++|+..|++....+ |-++..|..+..++...|++++|++.|++..+.+
T Consensus 23 ~~l~~al~l~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 23 ATLKDINAIPDDM-MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp CCTGGGCCSCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHhCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 4455556677774 3344455667778888888888888887765 4556667777778888888888888888888775
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004273 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 118 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 151 (764)
+.++..|..+..+|...|++++|+..|++..+.
T Consensus 101 -P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 101 -KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp -SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446677778888888888888888888877654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.33 E-value=4.4e-05 Score=75.43 Aligned_cols=164 Identities=7% Similarity=-0.060 Sum_probs=117.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHHccCChhHHHHHHHHHHHCCCC-CC----HHHHH
Q 004273 514 TVLHSLVEAQESHRAMEIFKQMKTCG-IPPNAA----TYNIMIDCCSIIRCFKSASALVSMMVRDGFY-PQ----TMTYT 583 (764)
Q Consensus 514 ~li~~~~~~~~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-p~----~~~~~ 583 (764)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...++++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999999887643 122321 3334666677778999999999988874222 22 33688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HhhH
Q 004273 584 ALIKILLDYGDFDEALNLLDLVSL----E-GIPHD-VLLYNTILKKACEKGRIDVIEFIIEQMHQN----KVQPD-PSTC 652 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~ 652 (764)
.+...|...|++++|...++++.+ . +..+. ..+|..+...|.+.|++++|...+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999998873 1 22222 237888899999999999999999887752 22233 4566
Q ss_pred HHHHHHHHhcC-ChHHHHHHHHHHHH
Q 004273 653 HFVFSGYVNCG-FHNSAMEALQVLSM 677 (764)
Q Consensus 653 ~~ll~~~~~~g-~~~~a~~~~~~~~~ 677 (764)
..+-.+|.+.| ++++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 66777889999 46999988887543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.29 E-value=7.6e-06 Score=72.79 Aligned_cols=130 Identities=9% Similarity=-0.153 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 131 (764)
...+..+...+...|++++|+..|++..... +.+...+..+..++...|+++.|.+.+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3444555666667777777777777776654 3345566666667777777777777777777654 3455666677777
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhh--HHHHHHHhccCCHHHHHHHHHHHH
Q 004273 132 LCKGGYLEEASNLIYFLGERYGIYPILPVY--NSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
+...|++++|...|++..+..+- +...+ -.+...+.+.|++++|+..+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777776554321 22233 223333555666777766665543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.27 E-value=5.1e-05 Score=74.96 Aligned_cols=162 Identities=7% Similarity=-0.041 Sum_probs=76.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhccCCCCc------chHHHHHHHhhCCCChhHHHHHHHHHHHcCc---ccc--HHHH
Q 004273 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGA------DDFFHILNYCARSPDPLFVMETWRMMEEKEI---GLN--NKCY 125 (764)
Q Consensus 57 ~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~ 125 (764)
..+..+...|++++|++.+.+..+... ... ..+..+...+...|+++.|++.+++..+... .+. ..+|
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 344555556666666666655544321 111 1122333444455566666666655553211 111 2355
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-----hhhhHHHHHHHhccCCHHHHHHHHHHHHhcC----CCC-Chhh
Q 004273 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYPI-----LPVYNSFLGACAKLHSMVHANLCLDLMDSRM----VGK-NEVT 195 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~t 195 (764)
+.+...|...|++++|...|++..+.....|+ ..+|+.+...|.+.|++++|+..++...+.. ... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 55555666666666666666555421000111 1355555555666666666666655544321 000 0334
Q ss_pred HHHHHHHHHhccChhHH-HHHHHHH
Q 004273 196 YTELLKLAVWQKNLSAV-HEIWEDY 219 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a-~~~~~~~ 219 (764)
|..+...+...|++++| ...++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 44455555555555555 4444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-05 Score=67.32 Aligned_cols=94 Identities=15% Similarity=0.022 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004273 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 133 (764)
.+..+...+...|++++|+..|+++.... +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 33334444445555555555555544432 2233334444444444444555544444444432 223334444444444
Q ss_pred ccCCHHHHHHHHHHHh
Q 004273 134 KGGYLEEASNLIYFLG 149 (764)
Q Consensus 134 ~~g~~~~A~~~~~~~~ 149 (764)
..|++++|...|+++.
T Consensus 89 ~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 89 KQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHH
Confidence 4444444444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-05 Score=66.66 Aligned_cols=108 Identities=13% Similarity=-0.112 Sum_probs=61.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+......|.+.|++++|++.|++..+.+ +.+...|..+..+|.+.|++++|+..|+...+..+. +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 45555666666666666666666655433 234445666666666666666666666666554322 344555555566
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHH
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
...|++++|.+.|+...+-.|.+..++..|.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 6666666666666666555555555544443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.26 E-value=7.5e-06 Score=71.21 Aligned_cols=95 Identities=8% Similarity=-0.045 Sum_probs=55.0
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhc
Q 004273 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 239 (764)
.+..+...+.+.|++++|+..|+......+. +...|..+-.++...|++++|...|++..+-.|.++..|..+..+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4444555555555555555555555554221 344555555555555555555555555555555556666666666667
Q ss_pred cCCHHHHHHHHHHHHH
Q 004273 240 LRDLKSAYETLQHMVA 255 (764)
Q Consensus 240 ~g~~~~A~~~~~~m~~ 255 (764)
.|++++|...|++..+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777776666
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-05 Score=70.29 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=83.2
Q ss_pred hhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCc
Q 004273 39 TLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI 118 (764)
Q Consensus 39 ~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 118 (764)
.|...++..|+. ...+..+...+...|++++|+..|+.....+ +.+...+..+..++...|+++.|++.|++..+.+
T Consensus 9 ~~~~al~~~p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEISSDT-LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCCHhh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 344556666664 3444455677888888888988888887765 4566667777788888888888888888888775
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc
Q 004273 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 152 (764)
+.++..+..+..+|...|++++|+..|+...+..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4466777788888888888888888888876544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2.9e-05 Score=68.96 Aligned_cols=129 Identities=12% Similarity=-0.135 Sum_probs=76.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|+..|+...+... .+..++..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 44455555666666666666666654432 22344555666666666666666666666655421 2444555555666
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHH--HHHHhhccCCHHHHHHHHHHHHH
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRK--FVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
...|++++|...++...+..+.+...+.. ++..+.+.|++++|...+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 66666666666666666555555544433 33336677888888888877654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.5e-05 Score=67.03 Aligned_cols=103 Identities=9% Similarity=-0.071 Sum_probs=72.9
Q ss_pred CchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHH
Q 004273 46 LNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCY 125 (764)
Q Consensus 46 ~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 125 (764)
++|+. ...+......|.+.|++++|++.|++..+.+ +.++..|..+..++.+.|+++.|++.+++.++.+ +.+...|
T Consensus 8 inP~~-a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~ 84 (126)
T 4gco_A 8 INPEL-AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGY 84 (126)
T ss_dssp CCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHH
Confidence 45553 3344455666777888888888888877665 4456667777777777788888888888777764 4456677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhh
Q 004273 126 LLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~~~~~ 151 (764)
..+..+|...|++++|++.|++..+.
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777777788888888887777654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2.4e-05 Score=65.29 Aligned_cols=109 Identities=12% Similarity=-0.069 Sum_probs=48.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+..+...+...|++++|.++|+++.+.. +.+..++..+...+.+.|++++|...|+.+.+... .+..++..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 34444444444555555555554443321 12233444444444445555555555544444321 1333444444444
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHHH
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW 235 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 235 (764)
...|++++|...++.+.+..+.+...+..+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45555555555555444443334444433333
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00021 Score=70.72 Aligned_cols=151 Identities=9% Similarity=-0.027 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHH--------HHHHHHHHHHHhhhcccchhcccccccccccccCC
Q 004273 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK--------SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (764)
+++++.++++.+.+..+.+..+|+.-..++.+.|.++ ++++.++++.+......
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~------------------ 201 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN------------------ 201 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH------------------
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH------------------
Confidence 4445555555555555555555555555544444444 88899999988433332
Q ss_pred CccCCcccchhhhHhhHHHHHHHHHccCC-------HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh--------
Q 004273 280 PIPLNALPVMKVLRWSFSDVIHACGRTQN-------SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL-------- 344 (764)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~-------- 344 (764)
.+|+.....+.+.++ ++++++.+++..... +-|...|+.+-..+.+.|+.
T Consensus 202 --------------SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~ 266 (349)
T 3q7a_A 202 --------------SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAI 266 (349)
T ss_dssp --------------HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred --------------HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccc
Confidence 488887777777776 688999998888764 22555666655555555543
Q ss_pred ------------hHHHHHHHHHHHCC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004273 345 ------------RNGMEVLKIMQQNN-----LKPQDSTIATLSVECSKALELDLAEALLDQISR 391 (764)
Q Consensus 345 ------------~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 391 (764)
....++..++...+ -.+......-|++.|...|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 12222222222111 012344445566666666666666666666653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00046 Score=68.02 Aligned_cols=196 Identities=9% Similarity=-0.100 Sum_probs=145.6
Q ss_pred HHHHHhcCCcc-hHHHHHHHhhhccCCCCcch-HHHHHHHhhCCCC----------hhHHHHHHHHHHHcCccccHHHHH
Q 004273 59 IVDALCRGERS-RASHLLLNLGHAHHSLGADD-FFHILNYCARSPD----------PLFVMETWRMMEEKEIGLNNKCYL 126 (764)
Q Consensus 59 i~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~ 126 (764)
+....+.|.+. +|+.+++.+...+ |+..+ ++.--......+. ++.++.+++.+...+ +-+..+|+
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~ 112 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 112 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 44455677765 8999999999876 44433 4433222222222 567889999998875 55778888
Q ss_pred HHHHHHHccC--CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC-HHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 127 LMMQALCKGG--YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS-MVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 127 ~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.-.-.+.+.| .+++++.+++.+.+.+ +-|...|+.-..++...|. ++++++.++.+.+..+. |..+|+.....+
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll 189 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 8777777777 4899999999998765 3466677777777777787 69999999999987654 777777665555
Q ss_pred Hhc--------------cChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc-----------CCHHHHHHHHHHHHHhhh
Q 004273 204 VWQ--------------KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL-----------RDLKSAYETLQHMVALAM 258 (764)
Q Consensus 204 ~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~ 258 (764)
... +.++++.+.+.......|.|..+|+-+-..+.+. +.++++++.++++.+ .
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~ 267 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--L 267 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--h
Confidence 444 4477888999999888999999998777776665 467889999999988 6
Q ss_pred cccc
Q 004273 259 MGKL 262 (764)
Q Consensus 259 ~~~~ 262 (764)
.|+.
T Consensus 268 ~pd~ 271 (331)
T 3dss_A 268 EPEN 271 (331)
T ss_dssp CTTC
T ss_pred Cccc
Confidence 6765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=72.44 Aligned_cols=123 Identities=8% Similarity=-0.033 Sum_probs=95.1
Q ss_pred HHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH-HHccCCH--
Q 004273 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA-LCKGGYL-- 138 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 138 (764)
+...|++++|+..++...... +.+...+..+..++...|+++.|...|++..+.+ +.+...+..+... |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 456788999999999888765 4566778888888889999999999999988875 4466777788888 7788988
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 004273 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
++|...|++..+.. +.+...+..+...|...|++++|...|+...+..
T Consensus 98 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999887653 2345678888888999999999999999988753
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00023 Score=70.46 Aligned_cols=221 Identities=9% Similarity=-0.014 Sum_probs=133.2
Q ss_pred CChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc-C-CHHHH
Q 004273 101 PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG-YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL-H-SMVHA 177 (764)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A 177 (764)
+..++|+++++.++..+ +-+..+|+.--..+...| .+++++++++.+...+ +-+..+|+.-...+.+. + +++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 33445666666666554 334445555555555555 3666666666665432 23344555544444444 4 56666
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhccChh--------HHHHHHHHHHccCCCCHHhHHHHHHHhhccCC-------
Q 004273 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS--------AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD------- 242 (764)
Q Consensus 178 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------- 242 (764)
+++++.+.+...+ +..+|+.-.-.+...+.++ ++.+.++.+.+..+.|..+|+....++.+.+.
T Consensus 145 L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHH
Confidence 6666666654322 4445544333333333343 77788888888788888888888888877775
Q ss_pred HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCH-------------
Q 004273 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNS------------- 309 (764)
Q Consensus 243 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~------------- 309 (764)
++++++.++++.+ ..|+. ...|+-+-..+.+.|+.
T Consensus 224 ~~eELe~~~~aI~--~~P~n------------------------------~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~ 271 (349)
T 3q7a_A 224 LQDELIYILKSIH--LIPHN------------------------------VSAWNYLRGFLKHFSLPLVPILPAILPYTA 271 (349)
T ss_dssp HHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCCSGGGHHHHGGGTC
T ss_pred HHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHhcCCCccccccccccccc
Confidence 6888888888887 55554 14777666666665543
Q ss_pred -------HHHHHHHHHHHHCC-----CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004273 310 -------GLAEQLMLQMQSLG-----LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 310 -------~~a~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 357 (764)
....+...++...+ -.++.+.+..+...|...|+.++|.++++.+.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 272 SKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp --------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 23333333333221 1356677888889999999999999999998643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-05 Score=68.98 Aligned_cols=111 Identities=13% Similarity=0.041 Sum_probs=85.1
Q ss_pred hhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCc
Q 004273 39 TLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI 118 (764)
Q Consensus 39 ~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 118 (764)
.|...+...|+.. ..+......+...|++++|+..|+.....+ +.+...+..+..++...|+++.|+..|+...+.+
T Consensus 6 ~l~~al~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 82 (142)
T 2xcb_A 6 TLAMLRGLSEDTL-EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD- 82 (142)
T ss_dssp ---CCTTCCHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHcCCHHHH-HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 3445566777643 344455677888999999999999988776 4566677788888888999999999999988875
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc
Q 004273 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 152 (764)
+.++..+..+..+|...|++++|...|+...+..
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4566778888888999999999999998886543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.9e-05 Score=77.44 Aligned_cols=96 Identities=10% Similarity=-0.091 Sum_probs=60.7
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhh
Q 004273 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
..+..+...+.+.|++++|+..|+......+. +...|..+..++...|++++|...++...+..+.+...+..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34455555555566666666666655554211 44455555555666666666666666666655666667777777788
Q ss_pred ccCCHHHHHHHHHHHHH
Q 004273 239 RLRDLKSAYETLQHMVA 255 (764)
Q Consensus 239 ~~g~~~~A~~~~~~m~~ 255 (764)
..|++++|...|++..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888887776
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.19 E-value=8.3e-06 Score=80.02 Aligned_cols=193 Identities=8% Similarity=-0.070 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 132 (764)
..+......+...|++++|+..|++..... +.+...|..+..++.+.|+++.|...+++..+.+ +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345556777889999999999999998875 3466778888999999999999999999998874 45677889999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHH
Q 004273 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
...|++++|...|++..+..+- +...+...+....+. ..+... ..........+......+ ..+ ..|+.++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKE--QRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH--TTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 9999999999999988654321 111222233322221 111221 122223233344443333 333 36888999
Q ss_pred HHHHHHHHccCCCCHHhHHHHHHHhhcc-CCHHHHHHHHHHHHH
Q 004273 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRL-RDLKSAYETLQHMVA 255 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 255 (764)
.+.++...+..+.+......+...+.+. +..++|.++|..+.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9988888877666666666666666665 678889999988765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.7e-05 Score=71.93 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=56.8
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHcc---CCCC----HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccc
Q 004273 196 YTELLKLAVWQKNLSAVHEIWEDYIKH---YSLS----IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS 268 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 268 (764)
+..+-..+...|++++|.+.+....+. .+.+ ...+..+..++...|++++|...+++..+.........
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 144 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV---- 144 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH----
Confidence 334444445555555555555544432 1111 23456666677777888888877777765322211100
Q ss_pred cccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 269 EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
....++..+...+...|++++|.+.+++..+
T Consensus 145 ----------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 145 ----------------------AIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 0013567777788888888888888777653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.1e-05 Score=65.65 Aligned_cols=94 Identities=12% Similarity=-0.081 Sum_probs=45.3
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
+..+...+...|+++.|...+++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+...+.
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHHHHHH
Confidence 4444445555555555555555554442 2234444555555555555555555555544322 123334444444555
Q ss_pred ccCCHHHHHHHHHHHHh
Q 004273 170 KLHSMVHANLCLDLMDS 186 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~ 186 (764)
+.|++++|...|+...+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.5e-05 Score=65.30 Aligned_cols=120 Identities=8% Similarity=-0.066 Sum_probs=96.6
Q ss_pred hhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHH
Q 004273 49 ESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLM 128 (764)
Q Consensus 49 ~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (764)
......+..+...+...|++++|+..|++..... +.+...+..+..++...|+++.|.+.+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3456667777888999999999999999998765 4466778888899999999999999999999874 4567788999
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC
Q 004273 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 172 (764)
...|.+.|++++|.+.|++..+.. +.+...+..+...+.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence 999999999999999999987643 223446666666665554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.7e-05 Score=65.70 Aligned_cols=118 Identities=9% Similarity=-0.131 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 004273 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+..+ .+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHH
Confidence 3344445555555555555555555554322 12334455555555555555555555555554321 13344444555
Q ss_pred HHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCC
Q 004273 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.+...|++++|...++...+..+.+...+..+..++.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55555555555555555555444455555555555544443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.3e-05 Score=72.44 Aligned_cols=125 Identities=10% Similarity=-0.001 Sum_probs=67.7
Q ss_pred ccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCc
Q 004273 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
.|++++|.+.++.+.........++..+...+...|+++.|...+++..+.....+..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------- 62 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH---------------------- 62 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH----------------------
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc----------------------
Confidence 3444444443332222222334455566666667777777777777666522211110
Q ss_pred ccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004273 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL----GLQP--SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 356 (764)
.....++..+...+...|++++|...+++..+. +-.| ....+..+...+...|++++|...+++..+
T Consensus 63 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 63 ----TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 000146777777888888888888887776542 1011 122355555666677777777777766653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.8e-05 Score=71.45 Aligned_cols=119 Identities=9% Similarity=-0.004 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHH-hhccCCH--HHHH
Q 004273 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-FTRLRDL--KSAY 247 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~A~ 247 (764)
.|++++|+..|+......+ .+...+..+...+...|++++|...++...+..+.+...+..+..+ +...|++ +.|.
T Consensus 23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 4445555555544444321 1334444444445555555555555555554444445555555555 5555665 6666
Q ss_pred HHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 248 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
..|+++.+ ..|+. ...|..+...+...|++++|...|++..+.
T Consensus 102 ~~~~~al~--~~p~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALA--LDSNE------------------------------ITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--hCCCc------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666655 23332 135555566666666666666666666554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.7e-05 Score=73.51 Aligned_cols=189 Identities=7% Similarity=-0.142 Sum_probs=132.5
Q ss_pred HHHHhcCCcchHHHHHHHhhhccCCCCcchHHHH-------HHHhhCCCChhHHHHHHHHHHHcCcccc-----------
Q 004273 60 VDALCRGERSRASHLLLNLGHAHHSLGADDFFHI-------LNYCARSPDPLFVMETWRMMEEKEIGLN----------- 121 (764)
Q Consensus 60 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~----------- 121 (764)
..+ ..+++..|.+.|.++.... +-....+..+ ..++.+.+...+++..+..-.+ +.|+
T Consensus 15 ~~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 15 VSM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGL 90 (282)
T ss_dssp HHH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTT
T ss_pred hcc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCc
Confidence 344 6899999999999999876 2334445544 2222222233333333333332 2221
Q ss_pred -----------HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 004273 122 -----------NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG 190 (764)
Q Consensus 122 -----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 190 (764)
...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d 166 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-D 166 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-C
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-C
Confidence 223445677888999999999999988643 3544466666678899999999999998554421 1
Q ss_pred CC--hhhHHHHHHHHHhccChhHHHHHHHHHHccCC-C--CHHhHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 004273 191 KN--EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS-L--SIFSLRKFVWSFTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 191 p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 256 (764)
|. ...+..+-.++...|++++|...|++...+.. | ..........++.+.|+.++|..+|+++...
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11 23667778889999999999999999987642 4 3457778888999999999999999999983
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2e-05 Score=68.47 Aligned_cols=95 Identities=6% Similarity=-0.160 Sum_probs=41.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|+......+. +...+..+..++
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 33344444444444444444444443322 123334444444444444444444444444443211 233344444444
Q ss_pred HhccChhHHHHHHHHHHc
Q 004273 204 VWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~ 221 (764)
...|++++|.+.|+...+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=3.9e-05 Score=64.67 Aligned_cols=99 Identities=10% Similarity=-0.085 Sum_probs=87.9
Q ss_pred ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHH
Q 004273 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236 (764)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 236 (764)
+...+..+...+...|++++|...|+....... .+...+..+...+...|++++|.+.++...+..+.+...+..+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445778888899999999999999999987642 3677888888899999999999999999998888889999999999
Q ss_pred hhccCCHHHHHHHHHHHHHh
Q 004273 237 FTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 237 ~~~~g~~~~A~~~~~~m~~~ 256 (764)
+...|+++.|...|++..+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999883
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.06 E-value=6.4e-05 Score=75.78 Aligned_cols=152 Identities=11% Similarity=-0.009 Sum_probs=117.3
Q ss_pred ChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-------------hhhhHHHHHHH
Q 004273 102 DPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-------------LPVYNSFLGAC 168 (764)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~li~~~ 168 (764)
+++.|.+.|+...+.. +.+...+..+...|.+.|++++|+..|++..+..+-.++ ..+|..+..+|
T Consensus 128 ~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444332 224567788888888999999999999888754321110 36888899999
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH-H
Q 004273 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA-Y 247 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~ 247 (764)
.+.|++++|+..|+...+..+ .+...|..+..++...|++++|...|+...+..+.+..++..+..++.+.|+.++| .
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988643 26778888888999999999999999999988888889999999999999999888 4
Q ss_pred HHHHHHHH
Q 004273 248 ETLQHMVA 255 (764)
Q Consensus 248 ~~~~~m~~ 255 (764)
.+|..|..
T Consensus 286 ~~~~~~~~ 293 (336)
T 1p5q_A 286 KLYANMFE 293 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.03 E-value=6.3e-05 Score=75.85 Aligned_cols=152 Identities=13% Similarity=-0.017 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--------------hhhHHHHHH
Q 004273 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN--------------EVTYTELLK 201 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~ 201 (764)
+++++|+..|+...+.. +-+...|..+...|.+.|++++|+..|+...+...... ..+|..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 44555555554332211 11345788899999999999999999999988643321 478888999
Q ss_pred HHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCc
Q 004273 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (764)
++...|++++|...++...+..+.+..++..+..+|...|++++|...|++..+ +.|+.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~------------------- 263 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNN------------------- 263 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSC-------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCC-------------------
Confidence 999999999999999999998888999999999999999999999999999998 55654
Q ss_pred cCCcccchhhhHhhHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 004273 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLA-EQLMLQMQS 321 (764)
Q Consensus 282 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~ 321 (764)
...+..+...+.+.|+.++| ..+|..|..
T Consensus 264 -----------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 264 -----------KAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 15788888999999999888 456666653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.3e-05 Score=73.86 Aligned_cols=132 Identities=9% Similarity=-0.118 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC--------------hhhhHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI--------------LPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
..+..+...+...|++++|+..|++..+..+-.|+ ...|..+..+|.+.|++++|+..++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555555666666666666666665542211111 1466666777777777777777777776653
Q ss_pred CCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHH-HHHHHHHH
Q 004273 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY-ETLQHMVA 255 (764)
Q Consensus 189 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 255 (764)
. .+...+..+..++...|++++|...|+...+..+.+..++..+..++...++.+++. ..|..+..
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 245566666677777777777777777777766667777777777777666666655 44444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.00 E-value=6.2e-05 Score=71.93 Aligned_cols=189 Identities=10% Similarity=-0.122 Sum_probs=121.3
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHH-------HHHHHccCCHHHHHHHHHHHhhhcCCCCChh------------
Q 004273 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLM-------MQALCKGGYLEEASNLIYFLGERYGIYPILP------------ 159 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------ 159 (764)
..+++..|.+.|.+..+.+ +-....|..+ ..++.+.++..+++..+..-. ++.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l---~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV---QISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT---TCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh---cCChhhhhhhhccCCcccc
Confidence 5788999999999998875 4456677766 455555555555555444332 3333221
Q ss_pred ----------hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCC--H
Q 004273 160 ----------VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS--I 227 (764)
Q Consensus 160 ----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~ 227 (764)
.+-.+...+...|++++|.++|+.+...+ |+......+-..+.+.+++++|+..++...+...|. .
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~ 171 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG 171 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH
Confidence 12235566777889999999988877654 444344444446778888888888887554322221 2
Q ss_pred HhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccC
Q 004273 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 307 (764)
..+..+..++...|++++|++.|++.......|... ...+.....++.+.|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~-----------------------------~da~~~~glaL~~lG 222 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACA-----------------------------RAIAWYLAMARRSQG 222 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTH-----------------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcccc-----------------------------HHHHHHHHHHHHHcC
Confidence 367777778888888888888888776422113210 025556667777788
Q ss_pred CHHHHHHHHHHHHHC
Q 004273 308 NSGLAEQLMLQMQSL 322 (764)
Q Consensus 308 ~~~~a~~~~~~m~~~ 322 (764)
+.++|..+|+++...
T Consensus 223 r~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 223 NESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 888888888888765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.9e-05 Score=66.92 Aligned_cols=101 Identities=14% Similarity=-0.083 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004273 51 ISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 51 ~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 130 (764)
....+..+...+...|++++|+..|++..+.. +-+...|..+..++...|+++.|+..+++.++.+ +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666777888999999999999888776 3466678888888888899999999999888875 446778888888
Q ss_pred HHHccCCHHHHHHHHHHHhhhcC
Q 004273 131 ALCKGGYLEEASNLIYFLGERYG 153 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~ 153 (764)
+|...|++++|+..|++..+..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHccCHHHHHHHHHHHHHhCC
Confidence 88899999999999888876543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=3e-05 Score=71.39 Aligned_cols=168 Identities=8% Similarity=-0.146 Sum_probs=69.3
Q ss_pred HHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHH
Q 004273 12 LIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFF 91 (764)
Q Consensus 12 ~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 91 (764)
.........|+++++. ..+... ....+ .....+......+...|++++|+..|++...... .++ .+.
T Consensus 9 ~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~-~~~ 75 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKK-SIYDYT---------DEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTE-EWD 75 (198)
T ss_dssp -------------CCC-SGGGCC---------HHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCT-TCC
T ss_pred chhhhhhhhhhccccC-chhhCC---------HHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-ccc-ccc
Confidence 3444555667777777 333311 11111 1234455556677788888888888888776431 111 000
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc
Q 004273 92 HILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171 (764)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 171 (764)
.. ....-. .......|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...
T Consensus 76 ~~---------------~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~ 135 (198)
T 2fbn_A 76 DQ---------------ILLDKK---KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYF 135 (198)
T ss_dssp CH---------------HHHHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHH
T ss_pred hh---------------hHHHHH---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHc
Confidence 00 000000 00012344444555555555555555555554332 22334455555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHH
Q 004273 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (764)
|++++|+..|+...+..+. +...+..+..++...++.+++.
T Consensus 136 ~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 136 GFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555443211 2333444444444444444333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00011 Score=59.79 Aligned_cols=102 Identities=11% Similarity=0.004 Sum_probs=65.0
Q ss_pred CcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004273 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 165 (764)
+...+..+...+...|+++.|...+++..+.. +.+...+..+...+...|++++|...|++..+..+-..+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34455666666667777777777777776653 33555666667777777777777777776654321100355666677
Q ss_pred HHHhcc-CCHHHHHHHHHHHHhcC
Q 004273 166 GACAKL-HSMVHANLCLDLMDSRM 188 (764)
Q Consensus 166 ~~~~~~-g~~~~A~~~~~~m~~~g 188 (764)
..+.+. |++++|.+.++......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 777777 77777777777766653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00022 Score=58.61 Aligned_cols=103 Identities=11% Similarity=-0.117 Sum_probs=45.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++...+..+ .+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 33444444444555555555554443321 12333444444444445555555555544444321 1233444444444
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHh
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFS 229 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~ 229 (764)
...|++++|.+.++...+..+.+...
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~ 108 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQL 108 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence 44555555555554444433333333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00013 Score=61.22 Aligned_cols=94 Identities=15% Similarity=-0.066 Sum_probs=45.1
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
+..+...+.+.|+++.|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.+ +.+...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 3444444445555555555555555443 2334445555555555555555555555544322 122334444455555
Q ss_pred ccCCHHHHHHHHHHHHh
Q 004273 170 KLHSMVHANLCLDLMDS 186 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~ 186 (764)
..|++++|...|+...+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555554444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0051 Score=60.55 Aligned_cols=220 Identities=7% Similarity=-0.119 Sum_probs=153.0
Q ss_pred CCCh-hHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC----------HHHHHHHHHHHhhhcCCCCChhhhHHHHHHH
Q 004273 100 SPDP-LFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY----------LEEASNLIYFLGERYGIYPILPVYNSFLGAC 168 (764)
Q Consensus 100 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 168 (764)
.|.+ ++|+++++.++..+ +-+..+|+.--..+...|. +++++.+++.+...+ +-+..+|+.-...+
T Consensus 42 ~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~wlL 118 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLL 118 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3444 47999999999875 3445566654444433333 688999999987654 34566777776677
Q ss_pred hccC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccC-hhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc-----
Q 004273 169 AKLH--SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN-LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL----- 240 (764)
Q Consensus 169 ~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 240 (764)
.+.| ++++++.+++.+.+..+. |..+|+.---.+...|. ++++.+.++.+.+..+.|..+|+....++.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 7777 589999999999987544 77777776666677777 58999999999998999999998887777665
Q ss_pred ---------CCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHcc-----
Q 004273 241 ---------RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT----- 306 (764)
Q Consensus 241 ---------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 306 (764)
+.++++++.+..... ..|++ ..+|+-+-..+.+.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~--~~P~d------------------------------~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFF--TDPND------------------------------QSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHH--HSTTC------------------------------HHHHHHHHHHHHSSSCGGG
T ss_pred cccccccchHHHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHhccCccc
Confidence 457889999999887 56655 24676555445444
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCcccHHHHHHH-----HHhcCChhHHHHHHHHHHHCC
Q 004273 307 ------QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA-----IVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 307 ------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-----~~~~~~~~~a~~~~~~m~~~~ 358 (764)
+.++++++.++++.+. .||. .|..+-.+ ....+..+++...+.++.+.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3567888888888875 5665 34322211 113455566666777776643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0001 Score=63.44 Aligned_cols=94 Identities=6% Similarity=-0.119 Sum_probs=48.9
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
+..+...+.+.|+++.|...|+...+.+ +.+...|..+..+|...|++++|+..|++..+.+ +.+...+..+..+|.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHH
Confidence 3344444555555555555555555543 3344455555555555555555555555554432 123334455555555
Q ss_pred ccCCHHHHHHHHHHHHh
Q 004273 170 KLHSMVHANLCLDLMDS 186 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~ 186 (764)
..|++++|+..|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00014 Score=59.16 Aligned_cols=95 Identities=4% Similarity=-0.241 Sum_probs=50.6
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCC--CHHhHHHHHHHh
Q 004273 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSF 237 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~ 237 (764)
.+..+...+.+.|++++|...|+...+... .+...+..+...+...|++++|.+.++...+..+. +...+..+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 444444455555555555555555444321 13344444444555555555555555555554444 555556666666
Q ss_pred hcc-CCHHHHHHHHHHHHH
Q 004273 238 TRL-RDLKSAYETLQHMVA 255 (764)
Q Consensus 238 ~~~-g~~~~A~~~~~~m~~ 255 (764)
... |++++|.+.|+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 666 666666666666654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00046 Score=72.45 Aligned_cols=198 Identities=8% Similarity=-0.153 Sum_probs=144.4
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCc----------------chHHHHHHHhhCCCChhHHHHHHHHHHHcCc-cc
Q 004273 58 QIVDALCRGERSRASHLLLNLGHAHHSLGA----------------DDFFHILNYCARSPDPLFVMETWRMMEEKEI-GL 120 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~ 120 (764)
....+...|++++|++.|..+.+....... ..+..+...|...|+++.|.+.+..+.+.-- .+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 356788999999999999998875422111 1267788999999999999999998876321 11
Q ss_pred cH----HHHHHHHHHHHccCCHHHHHHHHHHHhhh---cCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHHhc--CC-
Q 004273 121 NN----KCYLLMMQALCKGGYLEEASNLIYFLGER---YGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSR--MV- 189 (764)
Q Consensus 121 ~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~- 189 (764)
+. .+.+.+-..+...|+++.|..+++...+. .+..+ ...++..|...|...|++++|..+++..... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 23444445556779999999998876432 11112 2346788999999999999999999987653 11
Q ss_pred -CC-ChhhHHHHHHHHHhccChhHHHHHHHHHHcc---CC-C-C--HHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 190 -GK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKH---YS-L-S--IFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 190 -~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~-~-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.| ...++..+...|...|++++|..+++..... .. | . ...+..+...+...++++.|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2346778888999999999999999988752 22 2 2 34677778888999999999999988876
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00024 Score=59.66 Aligned_cols=109 Identities=14% Similarity=0.052 Sum_probs=78.7
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccc
Q 004273 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 274 (764)
++..+-..+.+.|++++|.+.|++..+-.|.+...|+.+..+|.+.|++++|++.|++..+. .|+...
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~---------- 77 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRA---------- 77 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTC----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--Ccccch----------
Confidence 45556667777778888888887777777777888888899999999999999999998873 332200
Q ss_pred cccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc
Q 004273 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 330 (764)
.......+|..+..++...|++++|++.|++.... .||..+
T Consensus 78 -------------~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 78 -------------DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred -------------hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 00011136777888888899999999999887764 455443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0004 Score=72.97 Aligned_cols=200 Identities=9% Similarity=-0.075 Sum_probs=109.4
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCCh---------------hhhHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCCh
Q 004273 130 QALCKGGYLEEASNLIYFLGERYGIYPIL---------------PVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNE 193 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 193 (764)
..+.+.|++++|++.|..+.+...-..+. ..+..|...|...|++++|.+.+..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34555666666666666665432221111 124556667777777777777776654421 11111
Q ss_pred hh----HHHHHHHHHhccChhHHHHHHHHHHcc------CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccch
Q 004273 194 VT----YTELLKLAVWQKNLSAVHEIWEDYIKH------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY 263 (764)
Q Consensus 194 ~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 263 (764)
.+ .+.+-..+...|+++.+..++.....- ...-..++..+...|...|++++|..+++.+...-...++.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 11 111222223456677777776666531 11224466777888888888888888888776532222210
Q ss_pred hcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--CC-C-C--cccHHHHHHH
Q 004273 264 INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG--LQ-P-S--SHTYDGFIRA 337 (764)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~-p-~--~~t~~~li~~ 337 (764)
......|..++..|...|++++|..++++..... +. | . ...+..+...
T Consensus 172 --------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 172 --------------------------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp --------------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred --------------------------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 0112577788888888888888888887765321 11 1 1 1223334444
Q ss_pred HHhcCChhHHHHHHHHHH
Q 004273 338 IVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 338 ~~~~~~~~~a~~~~~~m~ 355 (764)
+...+++.+|...|.+..
T Consensus 226 ~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 226 HCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp TTSSSCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 455666666666655543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=5.3e-05 Score=63.09 Aligned_cols=95 Identities=4% Similarity=-0.140 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004273 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 133 (764)
.+......+.+.|++++|+..|++..+.. +-+...+..+..++...|+++.|+..|++..+.+ +.+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34445556677777777777777777655 3455556666667777777777777777777664 335556667777777
Q ss_pred ccCCHHHHHHHHHHHhh
Q 004273 134 KGGYLEEASNLIYFLGE 150 (764)
Q Consensus 134 ~~g~~~~A~~~~~~~~~ 150 (764)
..|++++|+..|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00024 Score=59.57 Aligned_cols=93 Identities=11% Similarity=-0.055 Sum_probs=46.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccC
Q 004273 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 241 (764)
..+...+.+.|++++|+..|+...+..+ .+...|..+..++...|++++|...++...+..+.+...+..+..++...|
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 3333344444444444444444443321 133344444444444555555555555554444445555555666666666
Q ss_pred CHHHHHHHHHHHHH
Q 004273 242 DLKSAYETLQHMVA 255 (764)
Q Consensus 242 ~~~~A~~~~~~m~~ 255 (764)
++++|...|++..+
T Consensus 87 ~~~~A~~~~~~al~ 100 (126)
T 3upv_A 87 EYASALETLDAART 100 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666665
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00034 Score=57.34 Aligned_cols=97 Identities=9% Similarity=-0.075 Sum_probs=86.6
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHh
Q 004273 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237 (764)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 237 (764)
...+..+...+...|++++|...|+......+ .+...+..+...+...|++++|...++...+..+.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45677888889999999999999999988642 26777888888899999999999999999988888899999999999
Q ss_pred hccCCHHHHHHHHHHHHH
Q 004273 238 TRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 238 ~~~g~~~~A~~~~~~m~~ 255 (764)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999999987
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00016 Score=63.50 Aligned_cols=143 Identities=13% Similarity=-0.083 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CChhhHH
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KNEVTYT 197 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~ 197 (764)
.++..+...|...|++++|...+++..+...-.++. .++..+...+...|++++|...++...+.... ++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---- 85 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---- 85 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc----
Confidence 456666777777777777777777665432111111 24555666666666666666666655432100 010
Q ss_pred HHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccccccccccc
Q 004273 198 ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277 (764)
Q Consensus 198 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 277 (764)
......+..+..++...|++++|...+++..+........
T Consensus 86 --------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------- 125 (164)
T 3ro3_A 86 --------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR-------------- 125 (164)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------
T ss_pred --------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch--------------
Confidence 0012344555666677777777777777766532111110
Q ss_pred CCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
.....++..+...+...|++++|.+.+++..+
T Consensus 126 ------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 126 ------------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------------HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 00014666777777778888888887777654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.3e-05 Score=63.94 Aligned_cols=87 Identities=8% Similarity=-0.095 Sum_probs=47.4
Q ss_pred cCCcchHHHHHHHhhhcc--CCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHH
Q 004273 65 RGERSRASHLLLNLGHAH--HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEAS 142 (764)
Q Consensus 65 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 142 (764)
.|++++|+..|++..+.+ .+-+...+..+..++...|+++.|++.|++..+.+ +.+...+..+..+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 456666666666666542 11223345555556666666666666666666553 334555556666666666666666
Q ss_pred HHHHHHhhhc
Q 004273 143 NLIYFLGERY 152 (764)
Q Consensus 143 ~~~~~~~~~~ 152 (764)
..|++..+..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 6666655443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00025 Score=59.54 Aligned_cols=55 Identities=11% Similarity=-0.074 Sum_probs=24.2
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004273 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 148 (764)
+...+.+.|+++.|++.|++.++.. +.+...|..+..+|.+.|++++|++.|++.
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3344444444444444444444432 223334444444444444444444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00036 Score=59.33 Aligned_cols=96 Identities=10% Similarity=-0.083 Sum_probs=52.4
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhh
Q 004273 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
..|..+...+...|++++|+..|+......+ .+...+..+...+...|+++.|...++...+..+.+...+..+..+|.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 3444444444455555555555554444321 133444444445555555555555555555544555556666666677
Q ss_pred ccCCHHHHHHHHHHHHH
Q 004273 239 RLRDLKSAYETLQHMVA 255 (764)
Q Consensus 239 ~~g~~~~A~~~~~~m~~ 255 (764)
..|+++.|...|++..+
T Consensus 89 ~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 89 EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 77777777777777665
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00018 Score=63.75 Aligned_cols=98 Identities=10% Similarity=-0.126 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+...+..+...|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|+...+.... +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34455555666666666666666666655432 123445555555556666666666666555554211 233444444
Q ss_pred HHHHhccChhHHHHHHHHHHc
Q 004273 201 KLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~ 221 (764)
.++...|++++|...|+...+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 444444444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00061 Score=58.71 Aligned_cols=96 Identities=13% Similarity=-0.154 Sum_probs=55.0
Q ss_pred chHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHH
Q 004273 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN----NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 163 (764)
..+..+...+...|+++.|.+.|++..+.. |+ ...+..+...|...|++++|+..+++..+.. +.+...+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHHH
Confidence 345555556666666666666666666543 33 4455556666666666666666666654432 123445555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhc
Q 004273 164 FLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+..++...|++++|...|+...+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555666666666666666665553
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0003 Score=59.82 Aligned_cols=100 Identities=12% Similarity=-0.185 Sum_probs=61.1
Q ss_pred CCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004273 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 164 (764)
.+...+..+...+...|+++.|...|+...+.. +.+...|..+...|...|++++|...|++..+.. +.+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHH
Confidence 344456666666666666666666666666653 3345566666666666666666666666665432 2234456666
Q ss_pred HHHHhccCCHHHHHHHHHHHHhc
Q 004273 165 LGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
..+|...|++++|+..|+...+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 66666666666666666665543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00066 Score=58.49 Aligned_cols=97 Identities=8% Similarity=-0.184 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhH
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
+...+..+...+...|++++|...|++..+. .|+ ...|..+...|...|++++|+..++...+... .+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHH
Confidence 3445555555566666666666666655432 233 34445555555555555555555555544321 123333
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHc
Q 004273 197 TELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
..+..++...|++++|...++...+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333344444444444444444333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0003 Score=59.03 Aligned_cols=113 Identities=6% Similarity=0.004 Sum_probs=78.1
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccc
Q 004273 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 274 (764)
.+..+...+...|+++.|...++...+..+.+...+..+..++...|+++.|...+++..+........
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------- 74 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED----------- 74 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh-----------
Confidence 455555666667777777777777766666677777888888888999999999999888743221000
Q ss_pred cccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 004273 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 334 (764)
......+|..+...+...|++++|.+.|++..+. .|+......+
T Consensus 75 --------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 75 --------------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 0000147788888999999999999999998875 3454444333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00023 Score=59.17 Aligned_cols=92 Identities=12% Similarity=-0.017 Sum_probs=51.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCC
Q 004273 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.+...+.+.|++++|+..|+...+..+. +...|..+-.++...|++++|...+++..+..+.+...+..+..+|...|+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3444455555555555555555543211 344444455555555555555555555555555555566666666666667
Q ss_pred HHHHHHHHHHHHH
Q 004273 243 LKSAYETLQHMVA 255 (764)
Q Consensus 243 ~~~A~~~~~~m~~ 255 (764)
+++|...|++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00029 Score=59.14 Aligned_cols=97 Identities=10% Similarity=-0.104 Sum_probs=49.0
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC-CCC----hhhhHHH
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGI-YPI----LPVYNSF 164 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~~l 164 (764)
+..+...+...|+++.|...++...+.. +.+...+..+...|...|++++|...|++..+..+- .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444555555555555555555443 234445555555555556666665555555432211 011 3345555
Q ss_pred HHHHhccCCHHHHHHHHHHHHhc
Q 004273 165 LGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
...+.+.|++++|...|+...+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 55555566666666666555553
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00026 Score=62.10 Aligned_cols=134 Identities=8% Similarity=-0.239 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCC-CCc----chHHHHHHHhhCCCChhHHHHHHHHHHHcC----ccc-c
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHS-LGA----DDFFHILNYCARSPDPLFVMETWRMMEEKE----IGL-N 121 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~-~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 121 (764)
...+..+...+...|++++|+..+++....... .+. ..+..+...+...|+++.|.+.+++..+.. .++ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 444555556666677777777777766543211 111 235555556666666666666666655421 000 1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhc---CCC-CChhhhHHHHHHHhccCCHHHHHHHHHHHH
Q 004273 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERY---GIY-PILPVYNSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
...+..+...+...|++++|...+++..+.. +.. ....++..+...+...|++++|.+.+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2345555556666666666666665543211 000 011234444455555555555555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00023 Score=75.05 Aligned_cols=95 Identities=8% Similarity=-0.143 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 004273 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
...|..+..+|.+.|++++|+..|++..+.+ +.+...|..+..+|...|++++|+..|+...+..+. +...+..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3456666666777777777777777665543 234556666667777777777777777776664321 3445555666
Q ss_pred HHHhccChhHHHH-HHHHH
Q 004273 202 LAVWQKNLSAVHE-IWEDY 219 (764)
Q Consensus 202 ~~~~~~~~~~a~~-~~~~~ 219 (764)
++...++.+++.+ ++..|
T Consensus 394 ~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666665543 44443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0012 Score=55.21 Aligned_cols=94 Identities=7% Similarity=-0.140 Sum_probs=48.1
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCccccH---HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHH
Q 004273 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNN---KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-LPVYNSFLGAC 168 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~ 168 (764)
+...+...|+++.|.+.|+...+.. +.+. ..+..+..+|...|++++|...|++..+..+-.+. ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444455566666666666655543 1122 34445555556666666666666655443211110 23344555555
Q ss_pred hccCCHHHHHHHHHHHHhc
Q 004273 169 AKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~ 187 (764)
.+.|++++|...|+.+...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5556666666666555543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00076 Score=71.09 Aligned_cols=151 Identities=11% Similarity=0.005 Sum_probs=114.4
Q ss_pred ChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-------------hhhhHHHHHHH
Q 004273 102 DPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-------------LPVYNSFLGAC 168 (764)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~li~~~ 168 (764)
+++.|.+.|+...+.. +.....|..+...|.+.|++++|+..|++..+...-.++ ...|..+..+|
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554443331 224557888888999999999999999988764422211 47888999999
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHH-
Q 004273 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY- 247 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~- 247 (764)
.+.|++++|+..|+...+.... +...|..+-.+|...|++++|...|+.+.+..+.+..++..+..++.+.++.+.+.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986433 67788889999999999999999999999988888899999999999999888775
Q ss_pred HHHHHHH
Q 004273 248 ETLQHMV 254 (764)
Q Consensus 248 ~~~~~m~ 254 (764)
..+..|.
T Consensus 407 ~~~~~~f 413 (457)
T 1kt0_A 407 RIYANMF 413 (457)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 3445544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0013 Score=55.14 Aligned_cols=60 Identities=17% Similarity=0.012 Sum_probs=30.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004273 128 MMQALCKGGYLEEASNLIYFLGERYGIYPI-LPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+...+...|++++|...|+.+.+..+-.+. ...+..+..++.+.|++++|...|+...+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444555566666666666655443211110 024444555555556666666555555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00011 Score=77.89 Aligned_cols=125 Identities=9% Similarity=-0.140 Sum_probs=85.2
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc
Q 004273 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
+..+...+.+.|++++|++.|++..+.... +..+|..+..++...|++++|.+.+++..+..+.+..++..+..+|...
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344445566677777777777777665322 4566777777777778888888888777777777778888888888899
Q ss_pred CCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHH--HHccCCHHHHHHHHHH
Q 004273 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA--CGRTQNSGLAEQLMLQ 318 (764)
Q Consensus 241 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~ 318 (764)
|++++|.+.|++..+ ..|+.. ..+..+..+ +.+.|++++|++.+++
T Consensus 88 g~~~eA~~~~~~al~--~~p~~~------------------------------~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 88 GKFRAALRDYETVVK--VKPHDK------------------------------DAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCT------------------------------THHHHHHHHHHHHHHHHHCCC------
T ss_pred CCHHHHHHHHHHHHH--hCCCCH------------------------------HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999998887 344431 245555554 7778888888888773
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0003 Score=74.52 Aligned_cols=91 Identities=12% Similarity=-0.131 Sum_probs=47.2
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC
Q 004273 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 172 (764)
+...+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|++.+++..+.+ +.+...|..+..+|.+.|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 3334445555666666665555542 2334555555555555555555555555554322 123344555555555555
Q ss_pred CHHHHHHHHHHHHh
Q 004273 173 SMVHANLCLDLMDS 186 (764)
Q Consensus 173 ~~~~A~~~~~~m~~ 186 (764)
++++|++.|++..+
T Consensus 89 ~~~eA~~~~~~al~ 102 (477)
T 1wao_1 89 KFRAALRDYETVVK 102 (477)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00033 Score=57.73 Aligned_cols=87 Identities=8% Similarity=-0.101 Sum_probs=66.6
Q ss_pred CCCChhHHHHHHHHHHHcC--ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHH
Q 004273 99 RSPDPLFVMETWRMMEEKE--IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 176 (764)
..|+++.|+..|++.++.+ -+.+...+..+...|...|++++|+..|++..+.. +-+...+..+..++.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 3578888999999988864 24456788888889999999999999999887654 2345678888888999999999
Q ss_pred HHHHHHHHHhc
Q 004273 177 ANLCLDLMDSR 187 (764)
Q Consensus 177 A~~~~~~m~~~ 187 (764)
|+..|+.....
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999888765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0014 Score=66.73 Aligned_cols=125 Identities=7% Similarity=-0.215 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhc--------------CCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERY--------------GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
..+..+...+.+.|++++|+..|++..+.. --+.+..+|..+..+|.+.|++++|+..++...+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 356677888889999999999888776410 011234578888888999999999999999988764
Q ss_pred CCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHH
Q 004273 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 189 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
. .+...|..+-.++...|++++|.+.++...+..+.+...+..+..++...++.+++.+
T Consensus 304 p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2566788888889999999999999999988777788888888888877777666643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0014 Score=57.76 Aligned_cols=67 Identities=13% Similarity=0.037 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
..|..+..++...|++++|...++...+..+.+...|..+..+|...|+++.|...|++..+ +.|+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~ 130 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCC
Confidence 45566666677777777777777777776677777777778888888888888888888777 45544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0028 Score=55.68 Aligned_cols=95 Identities=17% Similarity=-0.068 Sum_probs=43.0
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcC-----------------ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKE-----------------IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 152 (764)
+......+.+.|+++.|+..|...++.- -+.+...|..+..+|.+.|++++|+..++...+.+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4444455555555555555555555430 01122344444444444444444444444443322
Q ss_pred CCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHh
Q 004273 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 153 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
+.+...|..+..+|...|++++|...|+....
T Consensus 94 --p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 94 --ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 12233444444444444444444444444444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0018 Score=55.53 Aligned_cols=113 Identities=12% Similarity=-0.063 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
..+......+.+.|++++|+..|++..+-.+-.|+.. ++.. ...+...|..+-.+
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-----------------a~~~--------~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-----------------AFDH--------AGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-----------------CCCH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-----------------hhhh--------ccchHHHHHHHHHH
Confidence 3445556666677777777777777665432211100 0000 00011244445555
Q ss_pred HHhccChhHHHHHHHHHHcc-------CCCCHHhH----HHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 203 AVWQKNLSAVHEIWEDYIKH-------YSLSIFSL----RKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
+...|++++|...++..++- .+.+...| .....++...|++++|+..|++..+ +.|++
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle--l~p~d 135 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE--MIEER 135 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh--cCCCc
Confidence 55555555555555555544 55566677 8888889999999999999999887 45543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00085 Score=67.52 Aligned_cols=128 Identities=13% Similarity=-0.087 Sum_probs=70.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh------------------hhhHHHHHHHhccCCHHHHHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL------------------PVYNSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------~~~~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
.+..+...+.+.|++++|+..|++..... |+. ..|+.+..+|.+.|++++|+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45556666666777777777776654332 222 267888888899999999999999888
Q ss_pred hcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHH-hhccCCHHHHHHHHHHHHH
Q 004273 186 SRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-FTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 186 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~ 255 (764)
+... .+...|..+..++...|++++|...|+...+..+.+...+..+..+ ....+..+.+..+|..|..
T Consensus 258 ~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 258 TEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7542 2567888888889999999999999998887766677777777666 3345677788888888876
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0082 Score=64.75 Aligned_cols=181 Identities=9% Similarity=-0.116 Sum_probs=139.3
Q ss_pred HHHHHhcCC-cchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCC----------hhHHHHHHHHHHHcCccccHHHHHH
Q 004273 59 IVDALCRGE-RSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD----------PLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 59 i~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (764)
+.+..+.|. .++|++.++.+...+ +-+...|+.--.++...++ +++++++++.+.+.+ +-+..+|+.
T Consensus 35 ~~~~~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~h 112 (567)
T 1dce_A 35 VFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 112 (567)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 344455555 468899999999876 3334456655555555555 889999999999875 557778988
Q ss_pred HHHHHHccC--CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 004273 128 MMQALCKGG--YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH-SMVHANLCLDLMDSRMVGKNEVTYTELLKLAV 204 (764)
Q Consensus 128 li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 204 (764)
-.-++.+.| +++++++.++++.+.+ +-|..+|+.-..++.+.| .++++++.++.+.+..+. |..+|+.....+.
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~ 189 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 189 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHH
Confidence 888888999 7799999999998765 346678888777777888 899999999999887544 7778877666655
Q ss_pred hc--------------cChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHH
Q 004273 205 WQ--------------KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244 (764)
Q Consensus 205 ~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 244 (764)
.. +.++++.+.+.....-.|.|..+|+.+-..+.+.+..+
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 190 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 53 45688889998888888889999999888888777643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00052 Score=72.20 Aligned_cols=134 Identities=5% Similarity=-0.144 Sum_probs=73.4
Q ss_pred HHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhcc---CCCC----
Q 004273 14 ADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAH---HSLG---- 86 (764)
Q Consensus 14 ~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~---~~~~---- 86 (764)
+..+..+|++++|. .++++.. .....++|-.......+++.+...|...|++++|..++++..... ..++
T Consensus 316 a~~~~~qg~~~eA~-~l~~~aL--~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 316 IDKARSEGLYHEVV-KLCRECL--EKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHTTTCHHHHH-HHHHHHH--HHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHhCCCHHHHH-HHHHHHH--HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34567889999888 5555443 334455555544456666667777777777777777776654220 0111
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHc-----C--ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEK-----E--IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 150 (764)
..+++.|...|...|++++|..++++..+. | .+....+.+.+-.++...|.+++|+.++.++.+
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123555666666666666666666554431 1 111122334444455555555555555555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.001 Score=54.43 Aligned_cols=79 Identities=9% Similarity=-0.142 Sum_probs=47.0
Q ss_pred hHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004273 70 RASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 70 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 149 (764)
.|+..|++..+.. +.+...+..+..++...|+++.|+..|++..+.+ +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666655543 3344555566666666666666666666666653 3345556666666666666666666666554
Q ss_pred h
Q 004273 150 E 150 (764)
Q Consensus 150 ~ 150 (764)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0021 Score=65.37 Aligned_cols=101 Identities=6% Similarity=-0.077 Sum_probs=86.2
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHhc--------------CCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHccCC
Q 004273 160 VYNSFLGACAKLHSMVHANLCLDLMDSR--------------MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS 224 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 224 (764)
.+..+...+.+.|++++|+..|+...+. ...| +..+|..+..++.+.|++++|.+.++...+..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 5777888899999999999999988761 0112 446777888889999999999999999999888
Q ss_pred CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 225 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
.+..++..+..+|...|++++|...|++..+ +.|+.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~ 340 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPED 340 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCC
Confidence 8899999999999999999999999999988 45544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.012 Score=49.94 Aligned_cols=111 Identities=7% Similarity=-0.120 Sum_probs=73.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 004273 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD----YGDFDEA 598 (764)
Q Consensus 523 ~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A 598 (764)
++.++|+..|++..+.| .|+.. +-..|...+.+++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777777766 33333 4445555566777777777777764 45556666666766 6677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 004273 599 LNLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 599 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 644 (764)
.++|++..+.| ++..+..|-..|.. .++.++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777776654 45566666666666 677777777777776655
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.017 Score=62.22 Aligned_cols=156 Identities=8% Similarity=-0.167 Sum_probs=125.6
Q ss_pred CChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC----------HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc
Q 004273 101 PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY----------LEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170 (764)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 170 (764)
...++|++.++.+.+.+ +-+..+|+.--.++...|+ ++++++.++.+.+.+ +-+..+|+.-...+.+
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 44567899999999885 4456678777666766676 999999999998764 3456688887778888
Q ss_pred cC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcc-ChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc-------
Q 004273 171 LH--SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK-NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL------- 240 (764)
Q Consensus 171 ~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 240 (764)
.| +++++++.++.+.+..+. +..+|+.--..+...| .++++.+.++.+.+..+.+..+|+....++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 88 779999999999997644 7778887777777788 889999999999998999999999988887663
Q ss_pred -------CCHHHHHHHHHHHHHhhhcccc
Q 004273 241 -------RDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 241 -------g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
+.++++++.+++..+ ..|+.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~--~~P~~ 225 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF--TDPND 225 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH--HCSSC
T ss_pred ccccccHHHHHHHHHHHHHHHh--hCCCC
Confidence 567899999998887 56655
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00086 Score=67.46 Aligned_cols=130 Identities=5% Similarity=-0.149 Sum_probs=78.7
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh------------------hHHHHHHHHHhccChhHHHHHHHHHH
Q 004273 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV------------------TYTELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------------t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
..+..+...+.+.|++++|+..|+..... .|+.. .|..+..++.+.|++++|...++...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677788889999999999999998774 34443 66777778888899999999998888
Q ss_pred ccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHH
Q 004273 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 221 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
+..+.+..++..+..+|...|++++|...|++..+ +.|+.. ..+..+.
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~------------------------------~a~~~L~ 305 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDK------------------------------AIRRELR 305 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCH------------------------------HHHHHHH
Confidence 87777888888888899999999999988888876 344431 2444444
Q ss_pred HH-HHccCCHHHHHHHHHHHHHC
Q 004273 301 HA-CGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 301 ~~-~~~~g~~~~a~~~~~~m~~~ 322 (764)
.. ....+..+.+..+|..|...
T Consensus 306 ~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 306 ALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Confidence 43 23345566777777777653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0061 Score=52.31 Aligned_cols=63 Identities=10% Similarity=0.003 Sum_probs=54.7
Q ss_pred HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhh-------cccchhcccccccccccccCCCccCCcccchhhhHhhH---
Q 004273 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAM-------MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF--- 296 (764)
Q Consensus 227 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 296 (764)
...|+.+..++.+.|++++|+..+++..+ + .|+. ...|
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~~e~~pd~------------------------------~~A~~~~ 104 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALH--YFNRRGELNQDE------------------------------GKLWISA 104 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHCCTTSTH------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccccCCCch------------------------------HHHHHHH
Confidence 34899999999999999999999999998 5 6655 2577
Q ss_pred -HHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 297 -SDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 297 -~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
.....++...|++++|+..|++..+
T Consensus 105 ~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 105 VYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8889999999999999999999875
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0013 Score=69.29 Aligned_cols=59 Identities=8% Similarity=-0.112 Sum_probs=27.6
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHc-----C-cccc-HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEK-----E-IGLN-NKCYLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 148 (764)
++.|..+|...|++++|..++++.++. | -.|+ ..+++.|...|...|++++|+.++++.
T Consensus 354 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 354 LSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455555555555555555555544431 1 0111 224455555555555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00058 Score=55.40 Aligned_cols=90 Identities=12% Similarity=0.005 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------h
Q 004273 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP-------S 650 (764)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~ 650 (764)
+...+..+...+.+.|++++|.+.|++..... +.+...|..+...+...|++++|+..+++..+ ..|+. .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 34556677777788888888888888777542 33567777788888888888888888888874 44553 2
Q ss_pred hHHHHHHHHHhcCChHHHHH
Q 004273 651 TCHFVFSGYVNCGFHNSAME 670 (764)
Q Consensus 651 ~~~~ll~~~~~~g~~~~a~~ 670 (764)
.+..+..++...|+++.|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 33333334444454444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0013 Score=53.14 Aligned_cols=65 Identities=17% Similarity=-0.123 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..|+...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455566666666777777777776665432 224455666666666677777777777666654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.011 Score=50.04 Aligned_cols=110 Identities=5% Similarity=-0.164 Sum_probs=71.2
Q ss_pred CcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc----cCCHHHHH
Q 004273 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK----GGYLEEAS 142 (764)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 142 (764)
++++|++.|++..+.+ .+. .. +...|...+.++.|.+.|++..+.| ++..+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4567777777776665 222 22 5555555566677777777777764 55566666666666 67777777
Q ss_pred HHHHHHhhhcCCCCChhhhHHHHHHHhc----cCCHHHHHHHHHHHHhcC
Q 004273 143 NLIYFLGERYGIYPILPVYNSFLGACAK----LHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 188 (764)
++|++..+. + +...+..|-..|.. .++.++|...|+...+.|
T Consensus 82 ~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL-N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777543 2 44566666666666 677777777777776654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.88 E-value=6.8e-07 Score=89.11 Aligned_cols=260 Identities=11% Similarity=0.043 Sum_probs=157.0
Q ss_pred HHHHHHhhcccchhhhhccccccc-hhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchH
Q 004273 12 LIADSFCKSKFHKHERRNVANKLE-LSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDF 90 (764)
Q Consensus 12 ~~~~~~~~~g~~~~a~~~~~~~~~-~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 90 (764)
..-..|-+-+...+|++.+++.+. +.|.++-..++ .....|..+..+....++..+|++-|-+ .-|++.|
T Consensus 16 ~AF~iykKf~~~~~A~~VL~e~i~~ldRa~eyA~~~---n~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y 86 (624)
T 3lvg_A 16 PRGSHMLKFDVNTSAVQVLIEHIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSY 86 (624)
T ss_dssp -----------CCSTTTTCCGGGCCSTTTTTSSSSC---CCCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSS
T ss_pred hHHHHHHhccCcHHHHHHHHHhccccHHHHHHHHHh---CCccHHHHHHHHHHccCchHHHHHHHHh------CCChHHH
Confidence 344557777788888866666552 23333333333 2345788888888888988888876633 2467789
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc
Q 004273 91 FHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170 (764)
Q Consensus 91 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 170 (764)
..++.++.+.|.++..+..+.-..+. ..++.+=+.|+-+|++.++..+-.+++. .||..-...+.+-|..
T Consensus 87 ~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~--------~~N~A~iq~VGDrcf~ 156 (624)
T 3lvg_A 87 MEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYD 156 (624)
T ss_dssp SHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS--------CCSSSCTHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc--------CCCcccHHHHHHHHHH
Confidence 99999999999999888887765554 3344555688999999998776544331 3677777778888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHH
Q 004273 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETL 250 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 250 (764)
.|.++.|.-+|..+.. |.-|-..+...|++..|.+.-. -..++.+|-.+-.+|...+++..|.-.-
T Consensus 157 e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaAr-----KAns~ktWKeV~~ACvd~~EfrLAqicG 222 (624)
T 3lvg_A 157 EKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGAR-----KANSTRTWKEVCFACVDGKEFRLAQMCG 222 (624)
T ss_dssp SCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTT-----TCCSSCSHHHHTHHHHHSCTTTTTTHHH
T ss_pred ccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHH-----hcCChhHHHHHHHHHhCchHHHHHHHhc
Confidence 8888888777765433 2223333445555554433222 2345667777777787888777665443
Q ss_pred HHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc
Q 004273 251 QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330 (764)
Q Consensus 251 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 330 (764)
-.+. +.++. ...++..|-..|.+++.+.+++.-... -....-.
T Consensus 223 LniI---vhade---------------------------------L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGm 265 (624)
T 3lvg_A 223 LHIV---VHADE---------------------------------LEELINYYQDRGYFEELITMLEAALGL-ERAHMGM 265 (624)
T ss_dssp HHHH---CCSSC---------------------------------CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHH
T ss_pred chhc---ccHHH---------------------------------HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHH
Confidence 3333 23332 223566677788888877777765521 1223345
Q ss_pred HHHHHHHHHhc
Q 004273 331 YDGFIRAIVSD 341 (764)
Q Consensus 331 ~~~li~~~~~~ 341 (764)
|+-|.-.|++-
T Consensus 266 FTELaILYsKY 276 (624)
T 3lvg_A 266 FTELAILYSKF 276 (624)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHhc
Confidence 66555555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0048 Score=47.50 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=29.3
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 150 (764)
+..+...+...|+++.|...+++..+.. +.+...+..+...|.+.|++++|...|++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3344444444455555555555544432 22344444555555555555555555555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0072 Score=49.23 Aligned_cols=78 Identities=8% Similarity=-0.010 Sum_probs=44.7
Q ss_pred HHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhh
Q 004273 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
+.+.++...+..+.+...+..+..+|...|++++|...|++..+ ..|+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~----------------------------- 52 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTY----------------------------- 52 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC-----------------------------
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCc-----------------------------
Confidence 44455555555555556666666666666666666666666655 23332
Q ss_pred hHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
...|..+..++...|++++|...|++..+
T Consensus 53 -~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 53 -SVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13555666666666666666666665543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0044 Score=53.05 Aligned_cols=113 Identities=14% Similarity=0.065 Sum_probs=79.6
Q ss_pred hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCC----------HHHHHHHHHHHHHhhhcccchhcccccccccc
Q 004273 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD----------LKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 274 (764)
+.+.+++|.+.++...+..+.+...|..+..++...++ +++|+..|++..+ +.|+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~------------ 79 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKK------------ 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTC------------
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCc------------
Confidence 34456667777777776667777777777777776665 4699999999998 66665
Q ss_pred cccCCCccCCcccchhhhHhhHHHHHHHHHccC-----------CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 004273 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ-----------NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 343 (764)
..+|..+..+|...| ++++|++.|++..+. .|+...|...+...
T Consensus 80 ------------------~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~----- 134 (158)
T 1zu2_A 80 ------------------DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT----- 134 (158)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH-----
T ss_pred ------------------HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH-----
Confidence 258888999998764 899999999998875 67777665555533
Q ss_pred hhHHHHHHHHHHHC
Q 004273 344 LRNGMEVLKIMQQN 357 (764)
Q Consensus 344 ~~~a~~~~~~m~~~ 357 (764)
+++.+++-.+...
T Consensus 135 -~ka~el~~~~~~~ 147 (158)
T 1zu2_A 135 -AKAPQLHAEAYKQ 147 (158)
T ss_dssp -HTHHHHHHHHHHS
T ss_pred -HhCHhccCccccc
Confidence 3444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.004 Score=49.32 Aligned_cols=59 Identities=15% Similarity=-0.058 Sum_probs=24.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 184 (764)
.+..+...|...|++++|+..|++..+.++ .+...|..+..+|.+.|++++|+..|+..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444444433221 12223444444444444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.012 Score=45.26 Aligned_cols=65 Identities=14% Similarity=-0.071 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+...+..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|+...+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34556666667777777777777777765432 224456666666677777777777777766654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0088 Score=51.20 Aligned_cols=52 Identities=10% Similarity=0.005 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc-----------CCHHHHHHHHHHHHHhhhcccc
Q 004273 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL-----------RDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
+++|+..|++..+-.+.+..+|..+..+|... |++++|++.|++..+ +.|+.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~ 124 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCC
Confidence 45777777777777777777777888887766 489999999999988 67765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.016 Score=45.70 Aligned_cols=65 Identities=6% Similarity=-0.078 Sum_probs=50.6
Q ss_pred CCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004273 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 150 (764)
-++..+..+..++...|+++.|+..|++..+.+ +.+...|..+..+|...|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345567777788888888888888888888875 44566788888888888888888888887654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.23 E-value=1.2e-06 Score=87.41 Aligned_cols=459 Identities=11% Similarity=0.112 Sum_probs=229.4
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
+..|..|.++....+...+|++-| ++. -|+..|..+|.+..+.|.+++-..++.-.++. ..+..+=+.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHH
Confidence 344666666666666665554332 222 25556667777777777777776666544322 223345566777
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH
Q 004273 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
+|++.++..+.++++. .|+..-...+-.-|...|.++.|.-+|..+. -|..|...+.+.|++..|
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is--------N~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC--------CCTTTSSSSSSCSGGGSS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc--------cHHHHHHHHHHHHHHHHH
Confidence 7777776655444331 3555555566666666666666655554332 223333344555555554
Q ss_pred HHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 004273 247 YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326 (764)
Q Consensus 247 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 326 (764)
.+.-.+ .+. ..+|--+-.+|...+.+..|.-.--.++-
T Consensus 190 VdaArK-------Ans------------------------------~ktWKeV~~ACvd~~EfrLAqicGLniIv----- 227 (624)
T 3lvg_A 190 VDGARK-------ANS------------------------------TRTWKEVCFACVDGKEFRLAQMCGLHIVV----- 227 (624)
T ss_dssp TTTTTT-------CCS------------------------------SCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----
T ss_pred HHHHHh-------cCC------------------------------hhHHHHHHHHHhCchHHHHHHHhcchhcc-----
Confidence 322111 000 14788888888888887766655555442
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHh
Q 004273 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACD 406 (764)
Q Consensus 327 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~ 406 (764)
.......++..|-..|-+++...+++.-.... .....+++-|.-.|++-. +++..+.++..- +-.----+|.+|-
T Consensus 228 hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~---sriNipKviracE 302 (624)
T 3lvg_A 228 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFW---SRVNIPKVLRAAE 302 (624)
T ss_dssp CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSS---SSSCCTTTHHHHT
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHH---HhccHHHHHHHHH
Confidence 22223345566777888888877777765322 235566777777777652 333222222211 1111224677777
Q ss_pred cCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 004273 407 TMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486 (764)
Q Consensus 407 ~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (764)
+..-|.++.-++..-.+ .| ++.+....+...-++-..+.+.+. -..+..+|-.-|..
T Consensus 303 ~ahLW~ElvfLY~~ydE---~D----nA~ltMi~h~~~Aw~h~~Fkdii~----------------KVaN~EiyYKAi~F 359 (624)
T 3lvg_A 303 QAHLWAELVFLYDKYEE---YD----NAIITMMNHPTDAWKEGQFKDIIT----------------KVANVELYYRAIQF 359 (624)
T ss_dssp TTTCHHHHHHHHHHHTC---HH----HHHHTTTSCHHHHCCGGGGTTTGG----------------GCSCSHHHHHHHHH
T ss_pred HHhhHHHHHHHHhcchh---HH----HHHHHHHhCChhhccHHHHHHHHH----------------HcchHHHHHHHHHH
Confidence 77777777777766544 11 111110000000000000000000 01122222222222
Q ss_pred HhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhC--------C--CCCCHHHHHHHHHHHHc
Q 004273 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC--------G--IPPNAATYNIMIDCCSI 556 (764)
Q Consensus 487 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~--------g--~~p~~~t~~~ll~~~~~ 556 (764)
|.. ..|. ..|-|+.++...=+..++.++|++.-.. . -.-+...=.++-..|..
T Consensus 360 YL~---------------e~P~--lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 360 YLE---------------FKPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 (624)
T ss_dssp HTT---------------SCCT--TSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred HHH---------------hChH--HHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 221 1111 2333444443333444444444332100 0 01122233333334444
Q ss_pred cCChhHH------------HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004273 557 IRCFKSA------------SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624 (764)
Q Consensus 557 ~~~~~~a------------~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 624 (764)
..+++.- ..+-+++.++ +-...-..-...|.+.++++++.++.++ .+ .|.-.|...
T Consensus 423 EEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk------lykDAietA 490 (624)
T 3lvg_A 423 EEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCKK---DS------LYKDAMQYA 490 (624)
T ss_dssp TTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSST---TC------CTTGGGTTT
T ss_pred hhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHHh---cc------cHHHHHHHH
Confidence 4444321 2333334333 1223333444567788888888776543 12 344455666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 004273 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671 (764)
Q Consensus 625 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 671 (764)
..+|+.+-|+++++-..+.| +..+|...+-.|...=+.+.++++
T Consensus 491 a~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 491 SESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp TTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 77889999999999888754 345666677777776677766654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.57 Score=46.27 Aligned_cols=142 Identities=13% Similarity=0.017 Sum_probs=81.5
Q ss_pred CCCChhhHHHHHHHHHH--cC---ChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHc---cC--ChhHHH---HHHHHH
Q 004273 505 TPLGTPTYNTVLHSLVE--AQ---ESHRAMEIFKQMKTCGIPPN-AATYNIMIDCCSI---IR--CFKSAS---ALVSMM 570 (764)
Q Consensus 505 ~~~~~~~~~~li~~~~~--~~---~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~---~~--~~~~a~---~~~~~~ 570 (764)
.+.+...|...+.+... .+ ...+|..+|++..+. .|+ ...|..+.-+|.. .+ ...... .-++..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 34566778777766443 23 347889999998885 455 3344433333321 11 001111 111111
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004273 571 VRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649 (764)
Q Consensus 571 ~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 649 (764)
... .-+.+..+|..+...+...|++++|...++++...+ |+...|..+-..+.-.|++++|.+.+++... +.|..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCc
Confidence 111 124456666666666666677777777777777653 6666666666777777777777777777764 45666
Q ss_pred hhH
Q 004273 650 STC 652 (764)
Q Consensus 650 ~~~ 652 (764)
.+|
T Consensus 344 ~t~ 346 (372)
T 3ly7_A 344 NTL 346 (372)
T ss_dssp HHH
T ss_pred ChH
Confidence 654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.56 Score=38.04 Aligned_cols=138 Identities=12% Similarity=0.052 Sum_probs=94.7
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004273 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|..++..++..+..... +..-||-.|--....-+-+-..++++.+..-+.+ ...|++.....
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi~ 82 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVVE 82 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHHH
Confidence 477777777777776642 3444444444444445556666666666543322 22344444444
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhc
Q 004273 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 259 (764)
.+-.+- .+..-+...+.....+|.-++-.+++..+....+|++...-.+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 443322 245556677788888999999999999988888999999999999999999999999999999998875
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.16 Score=50.21 Aligned_cols=139 Identities=9% Similarity=-0.001 Sum_probs=83.9
Q ss_pred CCChhhHHHHHHHHHh--c---cChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc---C-----CHHHHHHHHHHHHHh
Q 004273 190 GKNEVTYTELLKLAVW--Q---KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL---R-----DLKSAYETLQHMVAL 256 (764)
Q Consensus 190 ~p~~~t~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g-----~~~~A~~~~~~m~~~ 256 (764)
+.+...|...+++... . .+..+|..+|++..+..|.....+..+..+|.-. + ........+......
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 4466677776665432 2 2246777777777776666666666555554310 0 111111112211111
Q ss_pred hhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 004273 257 AMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336 (764)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 336 (764)
...|.. ..+|..+...+...|+++.|...+++....+ |+...|..+-.
T Consensus 271 ~~~~~~------------------------------a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~ 318 (372)
T 3ly7_A 271 PELNNL------------------------------SIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGK 318 (372)
T ss_dssp GGGTTC------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred ccCCcC------------------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHH
Confidence 122222 2467777666677788888888888888864 67666666677
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC
Q 004273 337 AIVSDRGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 337 ~~~~~~~~~~a~~~~~~m~~~~~~ 360 (764)
.+.-.|++++|.+.|++....+..
T Consensus 319 ~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 319 VYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC
Confidence 777888888888888888776443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.45 Score=54.11 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=60.2
Q ss_pred HhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 004273 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566 (764)
Q Consensus 487 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 566 (764)
....|++++|.++.+.. .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+....+
T Consensus 662 ~l~~~~~~~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHTCHHHHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 34567788887776544 3456888888888888888888888887643 33444444455666655555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004273 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604 (764)
Q Consensus 567 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 604 (764)
-+.....|- ++.-..+|.+.|++++|.+++.+
T Consensus 730 ~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 730 AKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444331 23334445555666665555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.046 Score=56.33 Aligned_cols=86 Identities=7% Similarity=-0.019 Sum_probs=49.8
Q ss_pred cCChhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHH
Q 004273 557 IRCFKSASALVSMMVRD---GFYPQ----TMTYTALIKILLDYGDFDEALNLLDLVSLE-----G-IPHD-VLLYNTILK 622 (764)
Q Consensus 557 ~~~~~~a~~~~~~~~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~li~ 622 (764)
.|++++|+.++++..+. -+-|+ ..+++.|..+|...|++++|+.++++.... | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35667777776665532 11121 345666777777777777777777665431 1 1122 235666666
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 004273 623 KACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 623 ~~~~~g~~~~a~~~~~~m~~ 642 (764)
.|...|++++|+.++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777766666553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.058 Score=42.09 Aligned_cols=57 Identities=16% Similarity=-0.041 Sum_probs=34.3
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChh-hhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004273 129 MQALCKGGYLEEASNLIYFLGERYGIYPILP-VYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
...+.+.|++++|+..|++..+.. +.+.. .|..+..+|.+.|++++|+..|+...+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445556666777777666665432 22334 5566666666666666666666666654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.056 Score=55.72 Aligned_cols=86 Identities=15% Similarity=0.036 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHhhh--cCCC---CC-hhhhHHHHHHHhccCCHHHHHHHHHHHHhc-----CC-CCCh-hhHHHHHHH
Q 004273 136 GYLEEASNLIYFLGER--YGIY---PI-LPVYNSFLGACAKLHSMVHANLCLDLMDSR-----MV-GKNE-VTYTELLKL 202 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~--~~~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~-~t~~~ll~~ 202 (764)
|++++|+.++++..+. .-+. |+ ..+++.|..+|...|++++|+.++++.... |. .|+. .+++.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 5666666666554331 1111 22 235667777777777777777777665432 21 2222 356666667
Q ss_pred HHhccChhHHHHHHHHHHc
Q 004273 203 AVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~ 221 (764)
|..+|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777776664
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.11 Score=53.64 Aligned_cols=88 Identities=9% Similarity=-0.015 Sum_probs=46.6
Q ss_pred HHccCChhHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC---CC-HHHHHH
Q 004273 554 CSIIRCFKSASALVSMMVRDG---FYPQ----TMTYTALIKILLDYGDFDEALNLLDLVSLE---GIP---HD-VLLYNT 619 (764)
Q Consensus 554 ~~~~~~~~~a~~~~~~~~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~---p~-~~~~~~ 619 (764)
+.+.|++++|+.++++..+.. +.|+ ..+++.|..+|...|++++|+.++++.... -+. |+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 444556666666666555321 1111 345566666666666666666666655421 111 11 224555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 004273 620 ILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 620 li~~~~~~g~~~~a~~~~~~m~ 641 (764)
|...|...|++++|+.++++.+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666666666666666554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.19 Score=38.72 Aligned_cols=66 Identities=12% Similarity=-0.076 Sum_probs=38.4
Q ss_pred CCcchHHHHHHHhhCCCC---hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004273 85 LGADDFFHILNYCARSPD---PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 151 (764)
.++..+..+..++...++ .+.|..++++.++.+ +-++.....+...+.+.|++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344445444444432222 466677777666664 345556666666666777777777777766543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.03 Score=57.86 Aligned_cols=103 Identities=5% Similarity=-0.154 Sum_probs=58.9
Q ss_pred hHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhcc---CCC
Q 004273 9 RFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAH---HSL 85 (764)
Q Consensus 9 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~---~~~ 85 (764)
.+...++.+.++|++++|+ .++++.. ..+..++|-.......+++.+...|...|+|++|+.++++....- ..+
T Consensus 289 ~ll~~ie~~~~~g~~~~a~-~~~~~~L--~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVL-AMCQAII--SSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHH-HHHHHHH--TCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhhccHHHHH-HHHHHHH--HhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 3445566677888888888 5554432 233444554444456666667777777777777777777654320 011
Q ss_pred C----cchHHHHHHHhhCCCChhHHHHHHHHHH
Q 004273 86 G----ADDFFHILNYCARSPDPLFVMETWRMME 114 (764)
Q Consensus 86 ~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 114 (764)
+ ..+++.|...|...|++++|..++++..
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1 1225555555555555555555555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.42 Score=54.41 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=23.2
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHH
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 253 (764)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555543322 34445555555555555555555555554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.16 Score=39.45 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=28.4
Q ss_pred HHhccChhHHHHHHHHHHccCCCCHH-hHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 203 AVWQKNLSAVHEIWEDYIKHYSLSIF-SLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
+...|++++|.+.++...+..+.+.. .+..+..+|...|++++|...|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555444444444 555555555555666666666665555
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.41 Score=40.40 Aligned_cols=85 Identities=11% Similarity=-0.003 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 004273 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYG---DFDEALNLLDLVSLEGIPH--DVLLYNTILKKACEKGRIDVIEF 635 (764)
Q Consensus 561 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~ 635 (764)
..+.+-|.+..+.|. ++..+...+..++++++ ++++++.+++...+.. .| +...+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444544444443 45555555666666655 4456666666665543 23 12233344445666666666666
Q ss_pred HHHHHHHCCCCCCH
Q 004273 636 IIEQMHQNKVQPDP 649 (764)
Q Consensus 636 ~~~~m~~~~~~p~~ 649 (764)
.++.+++ +.|+.
T Consensus 93 y~~~lL~--ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHh--cCCCC
Confidence 6666664 45544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.20 E-value=1.6 Score=37.79 Aligned_cols=101 Identities=6% Similarity=0.030 Sum_probs=70.1
Q ss_pred hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHH
Q 004273 97 CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176 (764)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 176 (764)
....|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+.. -+..+.-.|.-.|+.+.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----------D~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH----------SFDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----------CHHHHHHHHHHHTCHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----------CHHHHHHHHHHhCCHHH
Confidence 34567888888876654 366788888888888888888888888764 24555556666788777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHH
Q 004273 177 ANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 177 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (764)
-.++-+.....| -++.....+...|+++++.+++...
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 776655555443 2345555566778888888877543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.57 Score=35.92 Aligned_cols=64 Identities=14% Similarity=-0.033 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004273 578 QTMTYTALIKILLDYGD---FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 578 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
++..+..+..++...++ .++|..++++..... +-++..+..+...+...|++++|+..|+++++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444433322 455555555555432 22344444455555555555555555555553
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.15 E-value=4.8 Score=41.52 Aligned_cols=166 Identities=7% Similarity=0.025 Sum_probs=88.7
Q ss_pred HHHHHHhccChhHHHHHHHHHHcc-CCCC-----HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhc-ccchhccccccc
Q 004273 199 LLKLAVWQKNLSAVHEIWEDYIKH-YSLS-----IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGR 271 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~~~~ 271 (764)
|...+...|++.+|..++..+... ...+ ...+...++.|...+++..|..++.++...... +..
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~--------- 213 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY--------- 213 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC---------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc---------
Confidence 444555566666666666665431 1111 235566677888889999998888887532211 111
Q ss_pred ccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCcccHHHH----HHHHHhcCChhH
Q 004273 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL-GLQPSSHTYDGF----IRAIVSDRGLRN 346 (764)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~l----i~~~~~~~~~~~ 346 (764)
.+....-|...+..+...+++.+|...|.+.... .+.-|...+..+ +.+..-.+....
T Consensus 214 -----------------~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~ 276 (445)
T 4b4t_P 214 -----------------ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNL 276 (445)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSST
T ss_pred -----------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCch
Confidence 0111135667777788889998888888777542 111122222222 222222222222
Q ss_pred HHHHHHHHHHCCCCCchhHHHHHHHHHHhc--CCHHHHHHHHHHHh
Q 004273 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKA--LELDLAEALLDQIS 390 (764)
Q Consensus 347 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~ 390 (764)
-..++.........++...|..++.+|... .+++.+...|....
T Consensus 277 ~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 277 QNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp THHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 223333333322334667788888888764 35666666665443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.48 Score=37.32 Aligned_cols=66 Identities=6% Similarity=-0.114 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC-----CCCChhhhHHHHHHHhccCCHHHHHHHHHHHHh
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYG-----IYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
+...+..|...+.+.|+++.|...|+...+... -.+...++..|..++.+.|+++.|+..++...+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334445556666666666666666655543210 112334555666666666666666666666655
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.46 Score=40.11 Aligned_cols=81 Identities=6% Similarity=-0.128 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC---CHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhccChhHH
Q 004273 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH---SMVHANLCLDLMDSRMVGK--NEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a 212 (764)
+..+++.|++..+.. +++..+.-.+..++++.+ ++++++.+|+...+.. .| ....+-.+--++.+.+++++|
T Consensus 14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 334444444443221 134444444555555554 4445555555555542 12 122222233334444444444
Q ss_pred HHHHHHHHc
Q 004273 213 HEIWEDYIK 221 (764)
Q Consensus 213 ~~~~~~~~~ 221 (764)
.+.++.+.+
T Consensus 91 ~~y~~~lL~ 99 (152)
T 1pc2_A 91 LKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=3 Score=39.43 Aligned_cols=84 Identities=7% Similarity=-0.041 Sum_probs=53.2
Q ss_pred HHHHHHHHHHccCCC--CHHhHHHHHHHhhcc-----CCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccC
Q 004273 211 AVHEIWEDYIKHYSL--SIFSLRKFVWSFTRL-----RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPL 283 (764)
Q Consensus 211 ~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (764)
.|...+++..+-.+. +...|..|...|.+. |+.++|.+.|++..+ +.|+...
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~i------------------- 239 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDP------------------- 239 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCS-------------------
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCc-------------------
Confidence 444555555543333 455777777777773 788888888888777 4443100
Q ss_pred CcccchhhhHhhHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCC
Q 004273 284 NALPVMKVLRWSFSDVIHACGRT-QNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 284 ~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~ 325 (764)
.++......++.. |+.+.+.+.+++.......
T Consensus 240 ----------d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 240 ----------DHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp ----------HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred ----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3555666666664 7778888888887776544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.35 E-value=0.81 Score=35.95 Aligned_cols=71 Identities=10% Similarity=0.138 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh
Q 004273 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEG------IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
+..-+..|...+.+.|+++.|...++...... -.+...++..|..++.+.|+++.|...++++.+ +.|+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 34445566777777777777777777765421 123455677777777788888888888777775 456553
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.19 E-value=2.1 Score=37.09 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=27.7
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHH
Q 004273 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
....|+++.|.++.+.+ .+...|..|.....+.|+++-|++.|....
T Consensus 15 AL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 34556666666665433 245566666666666666666666666544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=1.2 Score=42.13 Aligned_cols=63 Identities=10% Similarity=-0.043 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 004273 546 TYNIMIDCCSII-----RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY-GDFDEALNLLDLVSLE 608 (764)
Q Consensus 546 t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 608 (764)
.|..+...|.+. |+.++|.+.|++..+.+..-+..++..+.+.+++. |+.++|.+.+++....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 444444444442 44555555555444432111233444444444442 4445555555544443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.12 E-value=11 Score=38.69 Aligned_cols=51 Identities=10% Similarity=0.067 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHHHhc-----CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc
Q 004273 171 LHSMVHANLCLDLMDSR-----MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
.|+++.|++.+-.+.+. ...........++..|...++++...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 37788888877666542 1223344566777888888888877776665554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.06 E-value=4.2 Score=33.10 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHhhh
Q 004273 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680 (764)
Q Consensus 616 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 680 (764)
.....++....+|.-+.-.+++..+.. +-+|++....-+..+|.+-|+..+|.+++.+--++|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334444445555555555555555322 2344555555555555555555555555555555444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.73 E-value=1.8 Score=36.11 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=16.7
Q ss_pred CChhhHHHHHHHHHHcCCh------hHHHHHHHHHHh
Q 004273 507 LGTPTYNTVLHSLVEAQES------HRAMEIFKQMKT 537 (764)
Q Consensus 507 ~~~~~~~~li~~~~~~~~~------~~A~~l~~~m~~ 537 (764)
.|..+|-..+...-+.|++ ++..++|++...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia 47 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE 47 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH
Confidence 3444555555555555655 555555555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.69 E-value=7.7 Score=42.60 Aligned_cols=53 Identities=8% Similarity=-0.018 Sum_probs=34.0
Q ss_pred HHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004273 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
.+...|+++.|+++-++.+.-.|.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34456666666666666666566666666666666667777777766666654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.07 E-value=1.2 Score=35.99 Aligned_cols=83 Identities=8% Similarity=-0.050 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC-CHh-hHHHHHHHHHhcCChHH
Q 004273 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV---IEFIIEQMHQNKVQP-DPS-TCHFVFSGYVNCGFHNS 667 (764)
Q Consensus 593 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p-~~~-~~~~ll~~~~~~g~~~~ 667 (764)
..+..+.+-|.+....| .|+..+--.+.+++.+..+... ++.+++.+...+ .| +.. ..+.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34445555555554444 2666666666677777665544 677777766532 23 222 23333347777777877
Q ss_pred HHHHHHHHHH
Q 004273 668 AMEALQVLSM 677 (764)
Q Consensus 668 a~~~~~~~~~ 677 (764)
|+++++.+..
T Consensus 93 A~~~~~~lL~ 102 (126)
T 1nzn_A 93 ALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.46 E-value=1.3 Score=35.88 Aligned_cols=84 Identities=10% Similarity=-0.088 Sum_probs=51.4
Q ss_pred CcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhH---HHHHHHHHHHcCcc-ccHHHHHHHHHHHHccCCHHHHH
Q 004273 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLF---VMETWRMMEEKEIG-LNNKCYLLMMQALCKGGYLEEAS 142 (764)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~ 142 (764)
....+.+.|......| .++..+-..+.-++.+..+... ++.+++.+.+.+.+ ......-.|.-++.+.|++++|+
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3445555565555545 3666665555556666655554 77888877776422 12233335556777888888888
Q ss_pred HHHHHHhhh
Q 004273 143 NLIYFLGER 151 (764)
Q Consensus 143 ~~~~~~~~~ 151 (764)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.14 E-value=3 Score=34.77 Aligned_cols=103 Identities=9% Similarity=0.101 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHccCCh------hHHHHHHHHHHHCCCCCCHH-HHHHHHHH------HHhcCCHHHHHHHHHHHHHCC
Q 004273 543 NAATYNIMIDCCSIIRCF------KSASALVSMMVRDGFYPQTM-TYTALIKI------LLDYGDFDEALNLLDLVSLEG 609 (764)
Q Consensus 543 ~~~t~~~ll~~~~~~~~~------~~a~~~~~~~~~~g~~p~~~-~~~~li~~------~~~~g~~~~A~~~~~~m~~~~ 609 (764)
|..++-..+....+.|+. ++.+++|++.... ++|+.. .|...|.. +...+++++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555666666666666776 6777788777764 455421 12222221 123478888888888886542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004273 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647 (764)
Q Consensus 610 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 647 (764)
+-=...|.....--.++|+++.|.+++.+....+.+|
T Consensus 91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2226677777777778888888888888888655443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.15 E-value=2.5 Score=46.42 Aligned_cols=54 Identities=9% Similarity=-0.039 Sum_probs=46.8
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHH
Q 004273 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 314 (764)
.-+...|+++.|+++-++... ..|+.+ .+|..|..+|...|+++.|+-
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF------------------------------~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSF------------------------------ESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCH------------------------------HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhh------------------------------HHHHHHHHHHHHhccHHHHHH
Confidence 345678999999999999887 677764 699999999999999999999
Q ss_pred HHHHHH
Q 004273 315 LMLQMQ 320 (764)
Q Consensus 315 ~~~~m~ 320 (764)
.++.+.
T Consensus 393 tLNScP 398 (754)
T 4gns_B 393 AINSMP 398 (754)
T ss_dssp HHHHSC
T ss_pred HHhcCC
Confidence 998874
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.69 E-value=2.6 Score=32.11 Aligned_cols=45 Identities=7% Similarity=0.018 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004273 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
..+-++.+....+-|++.+..+.+++|.+-+++..|.++++-.+.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444445555555555555555555555555555555544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.12 E-value=44 Score=37.63 Aligned_cols=210 Identities=6% Similarity=-0.050 Sum_probs=92.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcc--hHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchh
Q 004273 370 SVECSKALELDLAEALLDQISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYE 447 (764)
Q Consensus 370 i~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~ 447 (764)
...+.-.|+-+....++..+.+..+... .-++.-++.-.|+.+.+-.+.+.+.....|....-..+.-+|+..|.
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGT--- 573 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGT--- 573 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS---
T ss_pred hhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC---
Confidence 3344566777777777776655422222 22333445567888877777777765222333222233333333332
Q ss_pred hchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhh--HHHHHHHHHHcCCh
Q 004273 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT--YNTVLHSLVEAQES 525 (764)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~li~~~~~~~~~ 525 (764)
+....+..++..+.... ..+......+.-++...|+.+.+.+++.......|..+ -..+.-+....|+.
T Consensus 574 --------Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~ 644 (963)
T 4ady_A 574 --------GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG 644 (963)
T ss_dssp --------CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC
T ss_pred --------CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC
Confidence 11233333333333221 11111111122223234444444555443322223322 22233333334443
Q ss_pred -hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---------ChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 004273 526 -HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR---------CFKSASALVSMMVRD-GFYPQTMTYTALIKILLDYGD 594 (764)
Q Consensus 526 -~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~~g~ 594 (764)
.+++.++..+.. .+|..+-...+.+++..| ++...++.+...... .-.++...-..+..+....|.
T Consensus 645 ~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 645 LQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp CHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred cHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 567777777765 345554444444444332 233333333333322 223344444555555555553
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.04 E-value=4.9 Score=30.69 Aligned_cols=62 Identities=5% Similarity=-0.092 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHH
Q 004273 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
|.-+..+-++.+-...+.|++....+.|++|.+.+|+..|.++++.+.....+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 44555666666666667777777777777777777777777777776654333334444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.40 E-value=3.4 Score=41.77 Aligned_cols=67 Identities=9% Similarity=-0.091 Sum_probs=44.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHh-----cCCCCChhh
Q 004273 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-----RMVGKNEVT 195 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t 195 (764)
.++..+...|++++|...+..+...+ +-+...|..++.+|.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555566777777777777665544 23555777777777777777777777776544 266666554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.64 E-value=5.5 Score=33.90 Aligned_cols=73 Identities=11% Similarity=-0.017 Sum_probs=47.2
Q ss_pred ccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhcc-CCCCc-------chHHHHHHHhhCCCChhHHHHHHHHHH
Q 004273 43 TMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAH-HSLGA-------DDFFHILNYCARSPDPLFVMETWRMME 114 (764)
Q Consensus 43 ~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~ 114 (764)
.-|+.|.-..-.+...+..+...+.++.|+-+.+.+.... ..++. ..+..+..++...+++..|...|++.+
T Consensus 11 ~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 11 SSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp ----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3456676666667777888999999999999888765432 12332 135666778888899999999999875
Q ss_pred H
Q 004273 115 E 115 (764)
Q Consensus 115 ~ 115 (764)
+
T Consensus 91 q 91 (167)
T 3ffl_A 91 Q 91 (167)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.23 E-value=5 Score=40.54 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHhh
Q 004273 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ-----NKVQPDPST 651 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 651 (764)
...++..+...|+.++|...+..+.... +-+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3456667777788888887777776432 34667788888888888888888877777654 477777765
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.18 E-value=13 Score=30.20 Aligned_cols=62 Identities=5% Similarity=-0.092 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHH
Q 004273 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
|.-+..+-++.+-...+.|++....+.|++|.+.+|+..|.++++.+.....+....|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 44455566667777778888888888888888888888888888887765444444555544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=80.99 E-value=30 Score=40.70 Aligned_cols=144 Identities=13% Similarity=0.026 Sum_probs=87.1
Q ss_pred HHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC---------------------
Q 004273 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP--------------------- 541 (764)
Q Consensus 483 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~--------------------- 541 (764)
++..+.+.+..+.+.++..-.. .+...--.+..+|...|++++|.+.|.+... |+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~--~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN--SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhHHHHHHHhhhcc--CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccc
Confidence 5555666666666665544332 2323333445567777888888888766421 111
Q ss_pred --CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004273 542 --PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ----TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615 (764)
Q Consensus 542 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 615 (764)
.-..-|..++..+.+.+.++.+.++-...++..-.-+ ...|..+.+.+...|++++|...+-.+.....+ ..
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~ 972 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KS 972 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HH
Confidence 1112366777777778888888877776665421111 125777888888888888888888777655433 44
Q ss_pred HHHHHHHHHHHcCCHH
Q 004273 616 LYNTILKKACEKGRID 631 (764)
Q Consensus 616 ~~~~li~~~~~~g~~~ 631 (764)
....|+...|..|..+
T Consensus 973 cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHhCCChh
Confidence 6666776666665543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.60 E-value=14 Score=29.97 Aligned_cols=59 Identities=8% Similarity=0.099 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 004273 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 657 (764)
..+-++.+....+-|++.+..+.+++|.+-+|+..|.++++-.+.+ ..+...+|..++.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3344445555566677777777777777777777777777766653 3344444555543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=80.07 E-value=23 Score=28.86 Aligned_cols=66 Identities=8% Similarity=-0.034 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004273 611 PHDVLLYNTILKKACEKGRI---DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676 (764)
Q Consensus 611 ~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 676 (764)
.|+..+--.+.+++.+..+. .+++.+++.+...+-.-.......|.-++.+.|++++|+++.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45555555566666666543 3566666666653311122333344447777777777777777554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 764 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.84 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.47 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.4 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.95 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.94 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.92 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.88 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.87 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.81 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.75 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.74 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.71 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.57 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.44 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.38 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.27 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.15 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.14 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.09 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.08 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.06 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.05 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.97 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.94 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.9 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.85 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.79 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.77 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.72 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.65 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.6 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.59 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.36 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.31 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.31 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.29 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.25 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.22 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.18 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.11 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.11 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.07 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.03 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.96 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.81 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.78 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.7 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.64 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.59 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.98 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.81 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.57 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.18 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.66 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.46 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.33 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.17 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 88.82 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.27 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.17 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 85.62 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 83.48 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.7e-17 Score=171.00 Aligned_cols=150 Identities=9% Similarity=0.038 Sum_probs=102.3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004273 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 509 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
...+..+...+.+.|++++|+..|++..+.. +-+..++..+...+...|++++|...++...... +.+...+..+...
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHH
Confidence 3345555666667777777777777776653 2245667777777777777777777777776642 4456667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCC
Q 004273 589 LLDYGDFDEALNLLDLVSLEGIPH-DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGF 664 (764)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~ 664 (764)
+.+.|++++|++.+++..+. .| +..++..+...|.+.|++++|+..|++.++ +.|+ ...|..+..+|.+.||
T Consensus 315 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 78888888888888877643 34 456677777778888888888888887774 4564 4455666666666654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.1e-17 Score=170.46 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=79.4
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004273 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 509 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
..+|..+...+...|++++|+..|+...... +.+...+..+...+...|++++|...|++..+.. +-+...+..+..+
T Consensus 271 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 348 (388)
T d1w3ba_ 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455666666677777777777777666542 4456666777777777777777777777776642 2245567777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 004273 589 LLDYGDFDEALNLLDLVSLEGIPH-DVLLYNTILKKACEKGR 629 (764)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~ 629 (764)
|.+.|++++|.+.|++..+ +.| +...|..|...|.+.||
T Consensus 349 ~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 349 LQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 8888888888888887764 345 45677777777776664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=7.8e-12 Score=124.47 Aligned_cols=232 Identities=9% Similarity=-0.012 Sum_probs=187.8
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHcc
Q 004273 56 QMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG 135 (764)
Q Consensus 56 ~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 135 (764)
......+.+.|++++|+..|+++.+.. |-+...|..+..++...|+++.|...+.+..+.. +-+...+..+...|...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 345677899999999999999999876 4456788889999999999999999999999875 44677888999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChh-------------hhHHHHHHHhccCCHHHHHHHHHHHHhcCC-CCChhhHHHHHH
Q 004273 136 GYLEEASNLIYFLGERYGIYPILP-------------VYNSFLGACAKLHSMVHANLCLDLMDSRMV-GKNEVTYTELLK 201 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~ 201 (764)
|++++|.+.++......+-..... .....+..+...+...+|...|.......+ .++...+..+..
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999999999998865322111110 111223334455778889999888776532 235667778888
Q ss_pred HHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCc
Q 004273 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (764)
.+...|++++|...++...+..+.+..+|..+..+|.+.|++++|.+.|++..+ ..|+.
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~------------------- 239 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGY------------------- 239 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC-------------------
T ss_pred HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHH--Hhhcc-------------------
Confidence 899999999999999999988888899999999999999999999999999988 55654
Q ss_pred cCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 282 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
..+|..+..+|.+.|++++|++.|++.++
T Consensus 240 -----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 240 -----------IRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp -----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 15888999999999999999999999876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=8e-12 Score=124.40 Aligned_cols=239 Identities=9% Similarity=-0.122 Sum_probs=189.4
Q ss_pred hHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcc
Q 004273 9 RFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGAD 88 (764)
Q Consensus 9 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 88 (764)
.....+..+.+.|++++|+ ..|...++..|+. ...+..+...+...|++++|+..|++..+.. +-+..
T Consensus 21 ~~~~~g~~~~~~g~~~~A~----------~~~~~al~~~P~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 88 (323)
T d1fcha_ 21 QPFEEGLRRLQEGDLPNAV----------LLFEAAVQQDPKH-MEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQT 88 (323)
T ss_dssp SHHHHHHHHHHTTCHHHHH----------HHHHHHHHSCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHcCCHHHHH----------HHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccc
Confidence 3456677899999999999 5555557777874 4556667788999999999999999998876 44566
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHcCccc-c-------------HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC
Q 004273 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGL-N-------------NKCYLLMMQALCKGGYLEEASNLIYFLGERYGI 154 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~-------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 154 (764)
.+..+..++...|+++.|.+.++......... . .......+..+...+.+.+|...|.+..+.++-
T Consensus 89 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~ 168 (323)
T d1fcha_ 89 ALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT 168 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 78888889999999999999999988753110 0 001112233344556788899999888766555
Q ss_pred CCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHH
Q 004273 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 155 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
.++..++..+...+...|++++|+..|+......+. +..+|..+...+...|++++|.+.++...+..+.+..++..+.
T Consensus 169 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 247 (323)
T d1fcha_ 169 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 247 (323)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHH
Confidence 556678888999999999999999999998876433 5677888889999999999999999999988888899999999
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 235 WSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
.+|.+.|++++|+..|++..+ +.|+.
T Consensus 248 ~~~~~~g~~~~A~~~~~~al~--l~p~~ 273 (323)
T d1fcha_ 248 ISCINLGAHREAVEHFLEALN--MQRKS 273 (323)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH--HHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCcC
Confidence 999999999999999999988 44443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=3.6e-08 Score=96.30 Aligned_cols=204 Identities=8% Similarity=-0.099 Sum_probs=161.8
Q ss_pred CCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCC-ChhHHHHHHHHHHHcCccccHH
Q 004273 45 GLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSP-DPLFVMETWRMMEEKEIGLNNK 123 (764)
Q Consensus 45 ~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~ 123 (764)
.+.|+ -...+..+...+.+.+.+++|+.+++++++.+ |-+...|+....++...+ ++++|++.++...+.. +-+..
T Consensus 37 ~~~p~-~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~ 113 (315)
T d2h6fa1 37 IYSDK-FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQ 113 (315)
T ss_dssp CCCHH-HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ccCHH-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-Hhhhh
Confidence 34444 23344444555778899999999999999986 445566788887777765 6899999999999885 55788
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
+|..+...+.+.|++++|+..++++.+.+ +.+...|+.+...+.+.|++++|+..++.+.+..+. +...|+.+...+
T Consensus 114 a~~~~~~~~~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l 190 (315)
T d2h6fa1 114 VWHHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVI 190 (315)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHhHHHHhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHH
Confidence 99999999999999999999999998754 346779999999999999999999999999987533 566777665555
Q ss_pred HhccC------hhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 204 VWQKN------LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 204 ~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
...+. +++|.+.+....+..|.+...|+.+...+...| .+++.+.++...+
T Consensus 191 ~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 191 SNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred HHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 55444 568888888888888889999998888776554 5778888888876
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.94 E-value=4.7e-08 Score=95.39 Aligned_cols=222 Identities=8% Similarity=-0.027 Sum_probs=164.4
Q ss_pred chHHHHHHHhhhccCCCCcchHHHHHHHhhC--------------CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004273 69 SRASHLLLNLGHAHHSLGADDFFHILNYCAR--------------SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 69 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 134 (764)
+++..+|+.+...- +.++..+..-+..+.. .+..+.|..+|++..+...+.+...|...+..+.+
T Consensus 33 ~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 34556677766543 3444444333332211 12356788999998876555667788888999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHH-HHHhccChhHHH
Q 004273 135 GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK-LAVWQKNLSAVH 213 (764)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~ 213 (764)
.|+++.|..+|+++.+..+ .....+|...+..+.+.|+++.|.++|+.+...++. +...|..... -+...|+.+.|.
T Consensus 112 ~~~~~~a~~i~~~~l~~~~-~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence 9999999999999875321 112347889999999999999999999999886543 3333333322 234568999999
Q ss_pred HHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhh-hcccchhcccccccccccccCCCccCCcccchhhh
Q 004273 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA-MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
.+|+.+.+..+.++..|...+..+.+.|+++.|..+|++..+.. ..|...
T Consensus 190 ~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~----------------------------- 240 (308)
T d2onda1 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS----------------------------- 240 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC-----------------------------
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH-----------------------------
Confidence 99999999889999999999999999999999999999988743 222220
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
...|...+.--...|+.+.+.++++++.+.
T Consensus 241 ~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 241 GEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 137888888888899999999999998764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=9e-08 Score=93.35 Aligned_cols=197 Identities=10% Similarity=-0.052 Sum_probs=149.4
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHHH
Q 004273 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG-YLEEASNLIYFLGERYGIYPILPVYNSFLGA 167 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 167 (764)
.|+.+...+.+.+.+++|+++++++++.+ |-+..+|+....++...| ++++|+..++...+.+ +-+..+|+.+...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHhHH
Confidence 45666667778888999999999999875 456678888888887766 5899999999887654 3456688888888
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCC-----
Q 004273 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD----- 242 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----- 242 (764)
+.+.|++++|+..++.+.+..+. +...|..+...+...|++++|.+.++.+.+..+.+..+|+.+..++.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 99999999999999998886433 677888888888889999999999999988888888888887777655543
Q ss_pred -HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 243 -LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 243 -~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
+++|+..+....+ ..|+. ...|+.+...+. ....+++.+.++...+
T Consensus 201 ~~~~ai~~~~~al~--~~P~~------------------------------~~~~~~l~~ll~-~~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 201 VLEREVQYTLEMIK--LVPHN------------------------------ESAWNYLKGILQ-DRGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHH--HSTTC------------------------------HHHHHHHHHHHT-TTCGGGCHHHHHHHHH
T ss_pred hhHHhHHHHHHHHH--hCCCc------------------------------hHHHHHHHHHHH-hcChHHHHHHHHHHHH
Confidence 5778888887776 45544 146666655544 3445677777777665
Q ss_pred C
Q 004273 322 L 322 (764)
Q Consensus 322 ~ 322 (764)
.
T Consensus 248 l 248 (315)
T d2h6fa1 248 L 248 (315)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=1.3e-07 Score=94.30 Aligned_cols=270 Identities=9% Similarity=-0.088 Sum_probs=188.9
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCC----cchHHHHHHHhhCCCChhHHHHHHHHHHHcCc----c-ccHHHHHHHH
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLG----ADDFFHILNYCARSPDPLFVMETWRMMEEKEI----G-LNNKCYLLMM 129 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~li 129 (764)
...+...|++++|++++++........+ ...+..+..++...|+++.|...+++..+... . .....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4557789999999999999877542111 12466677888899999999999998876421 1 1234566777
Q ss_pred HHHHccCCHHHHHHHHHHHhhh---cCCCCC---hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCC----CCChhhHHHH
Q 004273 130 QALCKGGYLEEASNLIYFLGER---YGIYPI---LPVYNSFLGACAKLHSMVHANLCLDLMDSRMV----GKNEVTYTEL 199 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~l 199 (764)
..+...|++..|...+...... .+.... ...+..+...+...|+++.+...+........ .....++...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 8889999999999988876431 111111 12455677788899999999999988876422 2233455556
Q ss_pred HHHHHhccChhHHHHHHHHHHcc---CC----CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccc
Q 004273 200 LKLAVWQKNLSAVHEIWEDYIKH---YS----LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 272 (764)
...+...++...+...+...... .. .....+..+...+...|+++.|...+....+.....+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------- 248 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH---------- 248 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG----------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch----------
Confidence 66777889999888888777642 11 12335666777888999999999998876652211111
Q ss_pred cccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCCCc-ccHHHHHHHHHhcCChhHH
Q 004273 273 RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS----LGLQPSS-HTYDGFIRAIVSDRGLRNG 347 (764)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~-~t~~~li~~~~~~~~~~~a 347 (764)
.....+..+...+...|++++|...+++... .+..|+. .++..+-..+...|++++|
T Consensus 249 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 310 (366)
T d1hz4a_ 249 ------------------FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 310 (366)
T ss_dssp ------------------GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 0114667788999999999999999988763 2334433 3566677788889999999
Q ss_pred HHHHHHHHH
Q 004273 348 MEVLKIMQQ 356 (764)
Q Consensus 348 ~~~~~~m~~ 356 (764)
.+.+++..+
T Consensus 311 ~~~l~~Al~ 319 (366)
T d1hz4a_ 311 QRVLLDALK 319 (366)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=6.1e-07 Score=89.28 Aligned_cols=274 Identities=11% Similarity=-0.070 Sum_probs=192.8
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhhhHHH
Q 004273 93 ILNYCARSPDPLFVMETWRMMEEKEIGLN----NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI----LPVYNSF 164 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l 164 (764)
....+...|+++.|++++++..+..-..+ ..++..+...|...|++++|...|++..+...-.++ ...+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34566788999999999999987631111 246777888999999999999999987543221122 2356667
Q ss_pred HHHHhccCCHHHHHHHHHHHHhc----CCCCC--h-hhHHHHHHHHHhccChhHHHHHHHHHHcc-----CCCCHHhHHH
Q 004273 165 LGACAKLHSMVHANLCLDLMDSR----MVGKN--E-VTYTELLKLAVWQKNLSAVHEIWEDYIKH-----YSLSIFSLRK 232 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~ 232 (764)
...+...|++..+...+...... +..+. . ..+..+...+...|+++.+...+...... .......+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 77888999999999998876542 11111 1 24445666788899999999999888763 2233456667
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHH
Q 004273 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLA 312 (764)
Q Consensus 233 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 312 (764)
....+...++...+...+............. .......+..+...+...|+++.|
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~a 232 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYH-------------------------SDWISNANKVRVIYWQMTGDKAAA 232 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-------------------------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhccc-------------------------CchHHHHHHHHHHHHHhcccHHHH
Confidence 7778888999999999988876632221110 001114667778888999999999
Q ss_pred HHHHHHHHHCCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCch-hHHHHHHHHHHhcCCHHHHHH
Q 004273 313 EQLMLQMQSLGLQPSS---HTYDGFIRAIVSDRGLRNGMEVLKIMQQ----NNLKPQD-STIATLSVECSKALELDLAEA 384 (764)
Q Consensus 313 ~~~~~~m~~~g~~p~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~-~~~~~li~~~~~~g~~~~A~~ 384 (764)
...+.+........+. ..+..+..++...|++++|...++.... .+..|+. ..+..+...|.+.|++++|.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (366)
T d1hz4a_ 233 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 312 (366)
T ss_dssp HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999887654322222 2345567788899999999999988764 3444433 356678889999999999999
Q ss_pred HHHHHhh
Q 004273 385 LLDQISR 391 (764)
Q Consensus 385 ~~~~~~~ 391 (764)
.+++...
T Consensus 313 ~l~~Al~ 319 (366)
T d1hz4a_ 313 VLLDALK 319 (366)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987644
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=6.9e-07 Score=86.86 Aligned_cols=219 Identities=11% Similarity=0.040 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHcCccccHHHHHHHHHHHHc--------------cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004273 104 LFVMETWRMMEEKEIGLNNKCYLLMMQALCK--------------GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
+.+..+|++++..- +.++..|..-+..+-. .+..++|..+|++..+. ..+.+...|...+..+.
T Consensus 33 ~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~-~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH
Confidence 34556677766652 3344555444433221 23356777777776532 22334456677777777
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHH-hhccCCHHHHHH
Q 004273 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-FTRLRDLKSAYE 248 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~ 248 (764)
+.|+++.|..+|+.+...........|...+..+.+.++++.|.++|+.+.+..+.+...|...... +...|+.+.|..
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHH
Confidence 7788888888888877653333334567777777777777777777777777655555555554443 233467777777
Q ss_pred HHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCC
Q 004273 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPS 327 (764)
Q Consensus 249 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~ 327 (764)
+|+.+.+. .|+. ...|...+..+...|+++.|..+|++..... ..|+
T Consensus 191 i~e~~l~~--~p~~------------------------------~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 191 IFELGLKK--YGDI------------------------------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HHHHHHHH--HTTC------------------------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHHHHHHh--hhhh------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 77777763 2332 1366667777777777777777777765543 2222
Q ss_pred c--ccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004273 328 S--HTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 328 ~--~t~~~li~~~~~~~~~~~a~~~~~~m~~ 356 (764)
. ..|...+.--...|+.+.+.++++.+.+
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 2344444444455666666666655544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=6.4e-08 Score=91.83 Aligned_cols=206 Identities=13% Similarity=-0.062 Sum_probs=142.6
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH
Q 004273 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (764)
++.....+..+...|.+.|++++|+..|++..+.. |-++.+|+.+..++.+.|+++.|++.|++..+.+ +.+..++..
T Consensus 33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~ 110 (259)
T d1xnfa_ 33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLN 110 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHH
Confidence 44445566667788999999999999999999876 4567789999999999999999999999999975 446678889
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcc
Q 004273 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
+..+|...|++++|...|+...+.. +.+......+..++.+.+..+.+..+....... .++...+. ++..+....
T Consensus 111 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~ 185 (259)
T d1xnfa_ 111 RGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNI 185 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhhhhhh-HHHHHHHHH
Confidence 9999999999999999999987653 233334444444555666666666666655553 22222222 222222211
Q ss_pred C----hhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 208 N----LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 208 ~----~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
. .+.+...+.......+....++..+...|...|+++.|.+.|++... ..|+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 242 (259)
T d1xnfa_ 186 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 242 (259)
T ss_dssp CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred HHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCC
Confidence 1 12222222111111223345777889999999999999999999987 55655
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=1.7e-07 Score=88.72 Aligned_cols=221 Identities=7% Similarity=-0.177 Sum_probs=136.1
Q ss_pred chHHHHHHHhhhccCCC---CcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004273 69 SRASHLLLNLGHAHHSL---GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI 145 (764)
Q Consensus 69 ~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 145 (764)
+.++.-++++....... ....|..+..+|.+.|+++.|++.|++.++.. +-++.+|..+..+|.+.|++++|+..|
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 44445555554432111 12356677788889999999999999999875 557788999999999999999999999
Q ss_pred HHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCC
Q 004273 146 YFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225 (764)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 225 (764)
++..+.++ -+..++..+..+|...|++++|+..|+...+..+. +......+...+...+..+....+...... ..+
T Consensus 95 ~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 170 (259)
T d1xnfa_ 95 DSVLELDP--TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDK 170 (259)
T ss_dssp HHHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCC
T ss_pred hHHHHHHh--hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhc-cch
Confidence 99876542 34557888888999999999999999998876422 333333333333444444444444333333 222
Q ss_pred CHHhHHHHHHHhhccCC----HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHH
Q 004273 226 SIFSLRKFVWSFTRLRD----LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 226 ~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
+...++. +..+..... .+.+...+..... ..|+. ..+|..+..
T Consensus 171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------------------------~~~~~~lg~ 217 (259)
T d1xnfa_ 171 EQWGWNI-VEFYLGNISEQTLMERLKADATDNTS--LAEHL------------------------------SETNFYLGK 217 (259)
T ss_dssp CSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHH------------------------------HHHHHHHHH
T ss_pred hhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhh--cCccc------------------------------HHHHHHHHH
Confidence 2222222 222222211 2222222221111 11111 136777888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCcc
Q 004273 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSH 329 (764)
Q Consensus 302 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 329 (764)
.+...|++++|.+.|+..... .|+..
T Consensus 218 ~~~~~g~~~~A~~~~~~al~~--~p~~~ 243 (259)
T d1xnfa_ 218 YYLSLGDLDSATALFKLAVAN--NVHNF 243 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--CCTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHc--CCCCH
Confidence 888889999999999888764 45543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.71 E-value=3.9e-08 Score=97.41 Aligned_cols=214 Identities=7% Similarity=-0.138 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc--CCHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHHhccChhHHHH
Q 004273 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKL--HSMVHANLCLDLMDSRMVGKNEVTYT-ELLKLAVWQKNLSAVHE 214 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~ 214 (764)
+++|+.+++...+.+ +.+...|..+..++... ++.++|+..++.+.+.... +...+. .....+...+..+.|..
T Consensus 89 ~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 89 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHH
Confidence 444555555544322 12233344333333333 2345555555555443211 222222 22233444555555555
Q ss_pred HHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHh
Q 004273 215 IWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294 (764)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (764)
.++.+.+..+.+..+|+.+..++.+.|+.++|...+....+ +.|.
T Consensus 166 ~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~--------------------------------- 210 (334)
T d1dcea1 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLK--------------------------------- 210 (334)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHH---------------------------------
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHH---------------------------------
Confidence 55555555555555566665666666655555444333332 1111
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHH
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 374 (764)
...+...+...+..+.+...+....... .++..++..+...+...++..+|...+.+..+.++. +...+..+...|.
T Consensus 211 -~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~ 287 (334)
T d1dcea1 211 -ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALD 287 (334)
T ss_dssp -HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHH
Confidence 1112222334455555666666555543 234445555555666666666666666666554332 3344445555566
Q ss_pred hcCCHHHHHHHHHHHhhC
Q 004273 375 KALELDLAEALLDQISRC 392 (764)
Q Consensus 375 ~~g~~~~A~~~~~~~~~~ 392 (764)
..|+.++|.+.++.....
T Consensus 288 ~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 288 PLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp TGGGHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 666666666666655544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.57 E-value=3.1e-08 Score=98.15 Aligned_cols=247 Identities=12% Similarity=0.022 Sum_probs=160.6
Q ss_pred hhhccccCCchhhhHHHHHHH---HHH-------HHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCC--CChhH
Q 004273 38 RTLTTTMGLNEESISKATQMQ---IVD-------ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARS--PDPLF 105 (764)
Q Consensus 38 r~~~~~~~~~p~~~~~~~~~~---i~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~ 105 (764)
..+...+...|+..+ .|+.. +.. +...|++++|+.+++...+.+ +-+...+..+..++... ++.+.
T Consensus 50 ~~~~~~l~~~P~~~~-a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~ 127 (334)
T d1dcea1 50 ELTSQILGANPDFAT-LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWAR 127 (334)
T ss_dssp HHHHHHHHHCTTCHH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHCCCcHH-HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHH
Confidence 444445667777532 22221 111 223455788999999988765 34555566665555544 45788
Q ss_pred HHHHHHHHHHcCccccHHHHH-HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHH
Q 004273 106 VMETWRMMEEKEIGLNNKCYL-LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184 (764)
Q Consensus 106 a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 184 (764)
|+..++.+.+.. +++...+. .+...+...|.+++|+..++.+.+.+ +-+...|+.+...+.+.|++++|...+...
T Consensus 128 a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~--p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~ 204 (334)
T d1dcea1 128 ELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (334)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 999999988875 34555544 44567778899999999998887654 345667888888888888888776655443
Q ss_pred HhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchh
Q 004273 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI 264 (764)
Q Consensus 185 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 264 (764)
... .|+. ......+...+..+++...+.......+++...+..+...+...++.+.|...+.+..+ ..|+.
T Consensus 205 ~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~-- 275 (334)
T d1dcea1 205 ENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEP--ENKWC-- 275 (334)
T ss_dssp HHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--TCHHH--
T ss_pred HHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--hCchH--
Confidence 332 1111 12233345566667777777777666666666777777777777888888777777665 23322
Q ss_pred cccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc
Q 004273 265 NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328 (764)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 328 (764)
..+|..+...+...|++++|.+.|++..+. .|+.
T Consensus 276 ----------------------------~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~ 309 (334)
T d1dcea1 276 ----------------------------LLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMR 309 (334)
T ss_dssp ----------------------------HHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGG
T ss_pred ----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--Cccc
Confidence 146777777788888888888888887764 4543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=4.6e-06 Score=80.00 Aligned_cols=176 Identities=8% Similarity=-0.111 Sum_probs=103.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhh---cCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 128 MMQALCKGGYLEEASNLIYFLGER---YGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
....|...|++++|.+.|.+..+- .+-++ -..+|+.+..+|.+.|++++|.+.++..... +
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~---------------~ 107 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------F 107 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH---------------h
Confidence 355677888888888888766432 11111 1235666666666677777776666554431 1
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhh-ccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCcc
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT-RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (764)
...++...+. .++..+...|. ..|+++.|+..+++..+.....+.+
T Consensus 108 ~~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~------------------- 154 (290)
T d1qqea_ 108 THRGQFRRGA--------------NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV------------------- 154 (290)
T ss_dssp HHTTCHHHHH--------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH-------------------
T ss_pred hhcccchhHH--------------HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCch-------------------
Confidence 2222222222 23334444553 4588888888888876532111110
Q ss_pred CCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc------cHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004273 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH------TYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------t~~~li~~~~~~~~~~~a~~~~~~m~~ 356 (764)
.....+|..+...+...|++++|++.|++........... .+...+..+...+++..|...++...+
T Consensus 155 -------~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 155 -------ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp -------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred -------hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0001478889999999999999999999988753221111 123334455677888888888888776
Q ss_pred CC
Q 004273 357 NN 358 (764)
Q Consensus 357 ~~ 358 (764)
..
T Consensus 228 ~~ 229 (290)
T d1qqea_ 228 ED 229 (290)
T ss_dssp C-
T ss_pred hC
Confidence 54
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=8.8e-06 Score=77.93 Aligned_cols=212 Identities=11% Similarity=0.015 Sum_probs=123.9
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcC----ccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhh
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKE----IGL-NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI----LPV 160 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~ 160 (764)
|......|...++++.|.+.|.+..+.. -++ -..+|..+..+|.+.|++++|.+.+++..+-..-..+ ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 5556777888899999999999987642 122 2357889999999999999999998876432110111 122
Q ss_pred hHHHHHHHh-ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhc
Q 004273 161 YNSFLGACA-KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239 (764)
Q Consensus 161 ~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 239 (764)
+..+...|- ..|++++|+..|+...+. +...++. ..-..++..+...|..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l---------------~~~~~~~--------------~~~~~~~~~la~~~~~ 170 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEW---------------YAQDQSV--------------ALSNKCFIKCADLKAL 170 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH---------------HHHTTCH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHH---------------HHhcCch--------------hhhhhHHHHHHHHHHH
Confidence 333333332 235555555555443321 0000000 0012346677888999
Q ss_pred cCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 004273 240 LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319 (764)
Q Consensus 240 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 319 (764)
.|++++|...|+++.+....... . .... ...|...+..+...|+++.|...|++.
T Consensus 171 ~g~y~~A~~~~~~~~~~~~~~~~--~----------------------~~~~-~~~~~~~~~~~l~~~d~~~A~~~~~~~ 225 (290)
T d1qqea_ 171 DGQYIEASDIYSKLIKSSMGNRL--S----------------------QWSL-KDYFLKKGLCQLAATDAVAAARTLQEG 225 (290)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTT--T----------------------GGGH-HHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred cChHHHHHHHHHHHHHhCccchh--h----------------------hhhH-HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999998773222111 0 0000 123445566777899999999999998
Q ss_pred HHCCCC-CCc---ccHHHHHHHHHh--cCChhHHHHHHHHHH
Q 004273 320 QSLGLQ-PSS---HTYDGFIRAIVS--DRGLRNGMEVLKIMQ 355 (764)
Q Consensus 320 ~~~g~~-p~~---~t~~~li~~~~~--~~~~~~a~~~~~~m~ 355 (764)
.+.... ++. .....++.++.. .+.+++|...|+.+.
T Consensus 226 ~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 226 QSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp GCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 765321 122 133445555543 234666666665443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=1.5e-05 Score=70.50 Aligned_cols=134 Identities=10% Similarity=-0.119 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 132 (764)
..|+. ...+...|+++.|++.|+.+. ++++..+..+..++...|+++.|++.|++.++.+ +.+...|..+..+|
T Consensus 7 ~l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~ 80 (192)
T d1hh8a_ 7 SLWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 80 (192)
T ss_dssp HHHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHH
Confidence 34443 556788999999999998763 3667788889999999999999999999999986 55778999999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCC-------------C-hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC
Q 004273 133 CKGGYLEEASNLIYFLGERYGIYP-------------I-LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN 192 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~-------------~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 192 (764)
.+.|++++|+..|++..+...-.+ + ..++..+..++.+.|++++|.+.|....+..+.|+
T Consensus 81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~ 154 (192)
T d1hh8a_ 81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 154 (192)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence 999999999999998754211000 0 12445667788889999999999988877654443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=3.1e-05 Score=68.43 Aligned_cols=140 Identities=10% Similarity=0.046 Sum_probs=89.9
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH
Q 004273 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
.+...|+++.|++.|..+ ..|+..+|..+-.++...|++++|.+.|++.++-.+.++..|..+..+|.+.|++++|
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 445567777777766543 2355566666666777777777777777777776777777888888888888888888
Q ss_pred HHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 004273 247 YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326 (764)
Q Consensus 247 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 326 (764)
.+.|++..+... ++........|. ..+... ..++..+..++.+.|++++|.+.|.........+
T Consensus 90 ~~~~~kAl~~~~-~n~~~~~~~~~~-------------~~~~~~--~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 90 IKDLKEALIQLR-GNQLIDYKILGL-------------QFKLFA--CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHTTT-TCSEEECGGGTB-------------CCEEEH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHhCc-cCchHHHHHhhh-------------hcccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 888888775321 111000000000 000000 1356677888999999999999999888764443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.1e-05 Score=69.11 Aligned_cols=96 Identities=10% Similarity=-0.123 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004273 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 133 (764)
.+......|.+.|++++|+..|++..+.+ +-+...|..+..++...|+++.|.+.|+..++.+ +-+..+|..+..+|.
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHH
Confidence 34445666778888888888888888776 4556667777788888888888888888888775 446677888888888
Q ss_pred ccCCHHHHHHHHHHHhhh
Q 004273 134 KGGYLEEASNLIYFLGER 151 (764)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~ 151 (764)
..|++++|...|++..+.
T Consensus 90 ~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKV 107 (159)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc
Confidence 888888888888887654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.09 E-value=0.0011 Score=63.19 Aligned_cols=276 Identities=9% Similarity=0.020 Sum_probs=143.3
Q ss_pred CCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004273 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 164 (764)
|+...-..+...|.+.|.++.|..+|..+. -|..++..|.+.++++.|.+++.+.. +..+|..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~-------~~~~~k~~ 75 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEV 75 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC-------CHHHHHHH
Confidence 344444556666767777777777776432 34456666677777777766665441 34466666
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHH
Q 004273 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 244 (764)
...+.+.....-| .+.......+......++..|...|.++....+++........+...++.++..|++.+. +
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~ 149 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-Q 149 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-H
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-H
Confidence 6666666554432 122222334555556677777777777777777776665556666677777777777643 2
Q ss_pred HHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 004273 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324 (764)
Q Consensus 245 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 324 (764)
+ +.+.+....-.-+.+.... .. .. ...|.-++..|.+.|+++.|..+.- +.
T Consensus 150 k---l~e~l~~~s~~y~~~k~~~---~c----------------~~--~~l~~elv~Ly~~~~~~~~A~~~~i---~~-- 200 (336)
T d1b89a_ 150 K---MREHLELFWSRVNIPKVLR---AA----------------EQ--AHLWAELVFLYDKYEEYDNAIITMM---NH-- 200 (336)
T ss_dssp H---HHHHHHHHSTTSCHHHHHH---HH----------------HT--TTCHHHHHHHHHHTTCHHHHHHHHH---HS--
T ss_pred H---HHHHHHhccccCCHHHHHH---HH----------------HH--cCChHHHHHHHHhcCCHHHHHHHHH---Hc--
Confidence 2 2333322111111000000 00 00 1255666777777777777655432 22
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHH-------------HHHHhcCCHHHHHHHHHHHhh
Q 004273 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS-------------VECSKALELDLAEALLDQISR 391 (764)
Q Consensus 325 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-------------~~~~~~g~~~~A~~~~~~~~~ 391 (764)
.++..-....+..+.+..+.+...++.....+. .| ...+.++ ...-+.+++......+.....
T Consensus 201 ~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~ 276 (336)
T d1b89a_ 201 PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN 276 (336)
T ss_dssp TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT
T ss_pred chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 345555666677777777777777766665553 12 2233333 444444555555555555444
Q ss_pred CCCCcchHHHHHHHhcCCCHHHHH
Q 004273 392 CTNPKPFSAFLAACDTMDKPERAI 415 (764)
Q Consensus 392 ~~~~~~~~~li~~~~~~g~~~~a~ 415 (764)
.++....+++...|...++++.-.
T Consensus 277 ~n~~~vn~al~~lyie~~d~~~l~ 300 (336)
T d1b89a_ 277 HNNKSVNESLNNLFITEEDYQALR 300 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cChHHHHHHHHHHHhCcchhHHHH
Confidence 434456677777777777755433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=2.2e-05 Score=62.86 Aligned_cols=92 Identities=15% Similarity=-0.124 Sum_probs=62.6
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004273 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
....+...|++++|+..|++.++.. |-++..|..+..++...|+++.|++.+....+.+ +.+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 3555667777777777777776665 4455566666677777777777777777777664 4566667777777777777
Q ss_pred HHHHHHHHHHHhhh
Q 004273 138 LEEASNLIYFLGER 151 (764)
Q Consensus 138 ~~~A~~~~~~~~~~ 151 (764)
+++|+..|+...+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777766543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.06 E-value=0.0021 Score=61.05 Aligned_cols=257 Identities=9% Similarity=0.004 Sum_probs=126.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHH
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 374 (764)
-|.-++..+.+.++++.|.+++.+.. +..+|..+..+|........+ .+.......+......++..|-
T Consensus 42 d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye 110 (336)
T d1b89a_ 42 NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQ 110 (336)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHH
Confidence 45556666666666666666655431 444666666666655444332 2222333334445556666677
Q ss_pred hcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhh
Q 004273 375 KALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMF 452 (764)
Q Consensus 375 ~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 452 (764)
..|.+++...++....... +...++.++..|++.+ .++.++.+... .-.-| ..-++..|...+
T Consensus 111 ~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~--s~~y~---~~k~~~~c~~~~--------- 175 (336)
T d1b89a_ 111 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF--WSRVN---IPKVLRAAEQAH--------- 175 (336)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH--STTSC---HHHHHHHHHTTT---------
T ss_pred HcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc--cccCC---HHHHHHHHHHcC---------
Confidence 7777777776666554321 4445666666666653 23333332222 11111 111222222211
Q ss_pred hhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHH
Q 004273 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532 (764)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~ 532 (764)
.|..++-.|.+.|.+++|..++-.. .++..-....+..+.+..+.+...++.
T Consensus 176 --------------------------l~~elv~Ly~~~~~~~~A~~~~i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i 227 (336)
T d1b89a_ 176 --------------------------LWAELVFLYDKYEEYDNAIITMMNH--PTDAWKEGQFKDIITKVANVELYYRAI 227 (336)
T ss_dssp --------------------------CHHHHHHHHHHTTCHHHHHHHHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHH
T ss_pred --------------------------ChHHHHHHHHhcCCHHHHHHHHHHc--chhhhhHHHHHHHHHccCChHHHHHHH
Confidence 1233555666777777776665332 233334444555566666655544444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004273 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612 (764)
Q Consensus 533 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 612 (764)
....+. .|+. .+.++......-+. ..++..+-+.+++.-...+++.....+
T Consensus 228 ~~yL~~--~p~~--i~~lL~~v~~~~d~----------------------~r~V~~~~k~~~l~li~p~Le~v~~~n--- 278 (336)
T d1b89a_ 228 QFYLEF--KPLL--LNDLLMVLSPRLDH----------------------TRAVNYFSKVKQLPLVKPYLRSVQNHN--- 278 (336)
T ss_dssp HHHHHH--CGGG--HHHHHHHHGGGCCH----------------------HHHHHHHHHTTCTTTTHHHHHHHHTTC---
T ss_pred HHHHHc--CHHH--HHHHHHHhccCCCH----------------------HHHHHHHHhcCCcHHHHHHHHHHHHcC---
Confidence 443332 2321 12233222222222 223444445555555556665554433
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH
Q 004273 613 DVLLYNTILKKACEKGRIDVIE 634 (764)
Q Consensus 613 ~~~~~~~li~~~~~~g~~~~a~ 634 (764)
+..+.++|...|...+|.+.-.
T Consensus 279 ~~~vn~al~~lyie~~d~~~l~ 300 (336)
T d1b89a_ 279 NKSVNESLNNLFITEEDYQALR 300 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHhCcchhHHHH
Confidence 3356667777777777755433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=5.7e-05 Score=60.35 Aligned_cols=97 Identities=11% Similarity=-0.082 Sum_probs=43.4
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccCh
Q 004273 130 QALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
..+.+.|++++|+..|++..+.+ +.+...|..+..+|.+.|++++|+..+....+..+. +...|..+..++...|++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCH
Confidence 33444455555555554444332 223334444444444455555555555444443221 334444444444444444
Q ss_pred hHHHHHHHHHHccCCCCHHh
Q 004273 210 SAVHEIWEDYIKHYSLSIFS 229 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~ 229 (764)
++|...++...+..|.++..
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~ 107 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQL 107 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHH
Confidence 44444444444433333333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=0.00011 Score=62.67 Aligned_cols=102 Identities=12% Similarity=-0.151 Sum_probs=53.8
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccC
Q 004273 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN 208 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (764)
.+.|.+.|++++|+..|++..+.+ +.+...|..+..+|...|++++|+..|+...+..+. +..+|..+..++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCC
Confidence 344555556666666655555432 223445555555555556666666666555554211 33455555555555666
Q ss_pred hhHHHHHHHHHHccCCCCHHhHHHH
Q 004273 209 LSAVHEIWEDYIKHYSLSIFSLRKF 233 (764)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~l 233 (764)
+++|...++...+..+.+...+..+
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l 118 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKY 118 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 6666665555555444444444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.94 E-value=3.3e-05 Score=69.09 Aligned_cols=98 Identities=10% Similarity=-0.092 Sum_probs=56.9
Q ss_pred ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHH
Q 004273 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236 (764)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 236 (764)
+...+......|.+.|++++|+..|+......+ -+...|..+..+|.+.|++++|...++..++-.|.+..+|..+..+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 333344444455555555555555555544322 1444455555555555555555555555555555556667777777
Q ss_pred hhccCCHHHHHHHHHHHHH
Q 004273 237 FTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 237 ~~~~g~~~~A~~~~~~m~~ 255 (764)
|.+.|++++|+..|+++.+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777888888888877766
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.90 E-value=2.5e-05 Score=69.87 Aligned_cols=99 Identities=12% Similarity=-0.179 Sum_probs=63.2
Q ss_pred CCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004273 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 164 (764)
|+...+-.....+.+.|+++.|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+...+.+ +-+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHHH
Confidence 455555566666666777777777777766664 4456666667777777777777777777665322 1234456666
Q ss_pred HHHHhccCCHHHHHHHHHHHHh
Q 004273 165 LGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~ 186 (764)
..+|.+.|++++|+..|+....
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 6677777777777777766554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.85 E-value=2.6e-05 Score=61.81 Aligned_cols=88 Identities=5% Similarity=-0.119 Sum_probs=50.4
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
...+.+.|++++|+..|++..... |-++..|..+..++.+.|+++.|+..+++.++.+ +.+..+|..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 444555666666666666665554 2344555555556666666666666666665553 33455555566666666666
Q ss_pred HHHHHHHHHH
Q 004273 139 EEASNLIYFL 148 (764)
Q Consensus 139 ~~A~~~~~~~ 148 (764)
++|++.|++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=9e-05 Score=59.37 Aligned_cols=103 Identities=13% Similarity=0.102 Sum_probs=70.8
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCC---HHHHHHHHHHHHHhhhcccchhccccccccc
Q 004273 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD---LKSAYETLQHMVALAMMGKLYINRTSEGRLR 273 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 273 (764)
..+++.+...+++++|++.|+...+..+.++.++..+..++.+.++ .++|+.+|+++.+....|+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~----------- 71 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ----------- 71 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH-----------
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchH-----------
Confidence 3566677777788888888888877777788888888887776544 44577777777653322221
Q ss_pred ccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccH
Q 004273 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331 (764)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 331 (764)
..+|..+..+|.+.|++++|.+.|++..+. .|+....
T Consensus 72 -------------------~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--~P~~~~A 108 (122)
T d1nzna_ 72 -------------------RDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQNNQA 108 (122)
T ss_dssp -------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred -------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--CcCCHHH
Confidence 136667778888888888888888888774 4555433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.77 E-value=9.5e-05 Score=58.44 Aligned_cols=88 Identities=13% Similarity=-0.006 Sum_probs=50.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHH
Q 004273 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 244 (764)
...+.+.|++++|+..|+......+. +..+|..+..++...+++++|...++...+..|.+..++..+..+|...|+.+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHH
Confidence 34445555555555555555554322 34455555555555566666666666555555556666666666666666666
Q ss_pred HHHHHHHHH
Q 004273 245 SAYETLQHM 253 (764)
Q Consensus 245 ~A~~~~~~m 253 (764)
+|.+.|++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=8.3e-05 Score=59.60 Aligned_cols=90 Identities=9% Similarity=-0.078 Sum_probs=38.8
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCC---hhHHHHHHHHHHHcCcccc-HHHHHHHHHHHHc
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD---PLFVMETWRMMEEKEIGLN-NKCYLLMMQALCK 134 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 134 (764)
+..+...+++++|.+.|++....+ +.++.++..+..++.+.++ +..|+.+++++.+.+..|+ ..++..+..+|.+
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 344444445555555555544443 2333444444444433222 2234444444444332222 1234444444445
Q ss_pred cCCHHHHHHHHHHHh
Q 004273 135 GGYLEEASNLIYFLG 149 (764)
Q Consensus 135 ~g~~~~A~~~~~~~~ 149 (764)
.|++++|++.|+++.
T Consensus 85 ~g~~~~A~~~~~~aL 99 (122)
T d1nzna_ 85 LKEYEKALKYVRGLL 99 (122)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHH
Confidence 555555555554444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.00078 Score=57.69 Aligned_cols=81 Identities=10% Similarity=0.000 Sum_probs=56.8
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhc
Q 004273 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 239 (764)
+|+.+..+|.+.|++++|+..++......+. +..++..+..++...|++++|...|+...+..|.+..+...+-.+..+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4566777777788888888888777775422 666777777777788888888888888777666666666666555544
Q ss_pred cC
Q 004273 240 LR 241 (764)
Q Consensus 240 ~g 241 (764)
.+
T Consensus 143 ~~ 144 (170)
T d1p5qa1 143 IR 144 (170)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.60 E-value=0.0057 Score=56.57 Aligned_cols=51 Identities=14% Similarity=-0.055 Sum_probs=29.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCC
Q 004273 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 306 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~~~ 359 (764)
..+++.|+..|.+..+.| ++..+..|-..+.. .++.++|.++|+...+.|.
T Consensus 195 ~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 195 TKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 456677777777776655 33344444444443 3366667777777666654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.59 E-value=0.014 Score=53.75 Aligned_cols=64 Identities=6% Similarity=-0.197 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc----cCCHHHHHHHHHHHHhcC
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK----LHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 188 (764)
|+..+..|...+.+.|++++|+++|++..+. | +...+-.|-..|.. ..+...|...+......+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~ 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence 3456666777777778888888888877643 2 34444445555544 456677777766666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.0024 Score=54.49 Aligned_cols=115 Identities=10% Similarity=-0.060 Sum_probs=83.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+......+.+.|++++|+..|++..+..+..+... ..-......+ -..+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~---------------~~~~~~~~~~-------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS---------------NEEAQKAQAL-------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---------------SHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc---------------hHHHhhhchh-------HHHHHHHHHHHH
Confidence 344556677788888888888887765332211100 0000111111 123566677789
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
.+.|++++|...++..++..|.++.++..+..+|...|+++.|...|+...+ +.|+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n 129 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNN 129 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSC
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCC
Confidence 9999999999999999999899999999999999999999999999999988 66654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.31 E-value=0.0047 Score=52.45 Aligned_cols=95 Identities=11% Similarity=0.053 Sum_probs=62.5
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhc
Q 004273 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 239 (764)
+|+.+..+|.+.|++++|+..++......+ .+..+|..+..++...|++++|...|..+.+..|.+..+...+-.+..+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 455566677777888888888777776542 3566777777777778888888888887777666666666666555544
Q ss_pred cCCH-HHHHHHHHHHHH
Q 004273 240 LRDL-KSAYETLQHMVA 255 (764)
Q Consensus 240 ~g~~-~~A~~~~~~m~~ 255 (764)
.+.. +...++|..|-+
T Consensus 145 ~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 145 AKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 4433 234455555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.31 E-value=0.002 Score=55.28 Aligned_cols=124 Identities=13% Similarity=-0.068 Sum_probs=87.4
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHcc
Q 004273 56 QMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG 135 (764)
Q Consensus 56 ~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 135 (764)
..........|++++|.+.|+...... +.... .-+ ..+.+ +...-..+... ....+..+...+.+.
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l-----~~~-~~~~w--~~~~r~~l~~~----~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREW--RGPVL-----DDL-RDFQF--VEPFATALVED----KVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT-----GGG-TTSTT--HHHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc-----ccC-cchHH--HHHHHHHHHHH----HHHHHHHHHHHHHHC
Confidence 344567788999999999999987643 11100 000 01111 22222222211 345778889999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHh-----cCCCCChhh
Q 004273 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-----RMVGKNEVT 195 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t 195 (764)
|++++|+..++++.+.+ +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 81 g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 81 GRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999999999998765 34677999999999999999999999999754 588888765
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.0015 Score=52.62 Aligned_cols=92 Identities=11% Similarity=-0.092 Sum_probs=41.1
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-----hhhhHHHHHHH
Q 004273 94 LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-----LPVYNSFLGAC 168 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~li~~~ 168 (764)
...+.+.|+++.|++.|.+.++.+ +.+...+..+..+|.+.|++++|+..++++.+.+.-.+. ..+|..+...+
T Consensus 11 G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 11 GNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555443 233444555555555555555555555544332111111 01333344444
Q ss_pred hccCCHHHHHHHHHHHHh
Q 004273 169 AKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~ 186 (764)
...+++++|+..|+....
T Consensus 90 ~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 444555555555544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.25 E-value=0.0023 Score=53.42 Aligned_cols=72 Identities=8% Similarity=-0.165 Sum_probs=39.9
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHH
Q 004273 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (764)
+|+.+..+|.+.|++++|++.++...+..+ .+..+|..+..++...|++++|...|+...+..|.+..+...
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~ 140 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS 140 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 444455556666666666666666555431 244555556666666666666666666655554444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.0013 Score=53.09 Aligned_cols=100 Identities=7% Similarity=-0.019 Sum_probs=73.7
Q ss_pred HHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccccccccccc
Q 004273 198 ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277 (764)
Q Consensus 198 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 277 (764)
.+-..+...|++++|...|....+..|.+..++..+..+|.+.|+++.|+..++++.+ +.|+...
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~------------- 73 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENRE------------- 73 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTT-------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHH-------------
Confidence 4455677788888888888888877778888888899999999999999999999887 3333210
Q ss_pred CCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
.......+|..+...+...+++++|++.|..-...
T Consensus 74 ----------~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 74 ----------DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 00011246777777888888999999988877653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.18 E-value=0.0066 Score=50.48 Aligned_cols=119 Identities=8% Similarity=-0.030 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004273 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 590 (764)
.+......+.+.|++.+|+..|.+..+.- |... . ..+.... ..... ....+|+.+..+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~-~~~~~~~--~~~~~----~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------E-WDDQILL--DKKKN----IEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------T-CCCHHHH--HHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------h-hhhHHHH--Hhhhh----HHHHHHhhHHHHHH
Confidence 45556667778888888888888766531 1000 0 0000000 00000 12345667778888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 004273 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 652 (764)
+.|++++|++.+++..+.. +.+..+|..+..++...|++++|+..|++.++ +.|+....
T Consensus 79 ~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~ 137 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDI 137 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHH
T ss_pred Hhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 8888888888888887653 44677888888888888888888888888885 55665443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.0002 Score=73.89 Aligned_cols=167 Identities=7% Similarity=-0.163 Sum_probs=91.3
Q ss_pred cchHHHHHHHhhhccCCCCcchHHHHHHHhh--CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004273 68 RSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI 145 (764)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 145 (764)
+..+++.++...+....++.......+..+. ..+.++.+++.+....... +++...+..+...+.+.|+.++|...+
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 143 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQ 143 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence 4566777777665443334333322222211 1233444444443333322 345567778888888999999998877
Q ss_pred HHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCC
Q 004273 146 YFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225 (764)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 225 (764)
....... | ..++..|...+...|++++|...|+...+..+. +..+|+.|...+...|+..+|...|.+.....+|
T Consensus 144 ~~al~~~---~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~ 218 (497)
T d1ya0a1 144 SSSCSYI---C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218 (497)
T ss_dssp CHHHHHH---H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred HHHhCCC---H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 6654321 1 246777888889999999999999998886432 5578999999999999999999999999988888
Q ss_pred CHHhHHHHHHHhhcc
Q 004273 226 SIFSLRKFVWSFTRL 240 (764)
Q Consensus 226 ~~~~~~~li~~~~~~ 240 (764)
.+.++..|...+.+.
T Consensus 219 ~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 219 FPAASTNLQKALSKA 233 (497)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 888988888776543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.00041 Score=71.53 Aligned_cols=77 Identities=13% Similarity=0.072 Sum_probs=43.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHH
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 373 (764)
++..+...+...|++++|...|.+..+. .|+. .+|+.+...+...|+..+|...|.+...... |-...+..|...+
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHH
Confidence 4555566666666666666666666554 2333 4566666666666666666666666655432 2344444454444
Q ss_pred H
Q 004273 374 S 374 (764)
Q Consensus 374 ~ 374 (764)
.
T Consensus 231 ~ 231 (497)
T d1ya0a1 231 S 231 (497)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.07 E-value=0.0045 Score=53.04 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHhh
Q 004273 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ-----NKVQPDPST 651 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 651 (764)
..+..+...+.+.|++++|+..++++.... +-+...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 345667777777777777777777776542 33666777777777777777777777777633 477777654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.03 E-value=0.003 Score=53.84 Aligned_cols=77 Identities=5% Similarity=-0.288 Sum_probs=48.8
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHh
Q 004273 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 237 (764)
.|+.+..+|.+.|++++|+..++...+..+ .+..+|..+..++...|+++.|.+.|+.+.+-.+.+..+...+..+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455566666667777777777777666532 25556666666677777777777777777666555655555554443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.96 E-value=0.0023 Score=52.86 Aligned_cols=116 Identities=14% Similarity=0.035 Sum_probs=76.0
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc----------CCHHHHHHHHHHHHHhhhcccchhccccccccc
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL----------RDLKSAYETLQHMVALAMMGKLYINRTSEGRLR 273 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 273 (764)
.+.+.+++|.+.++...+..|.++.++..+..++... +.+++|+..|++..+ +.|+..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~---------- 75 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKD---------- 75 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCH----------
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhh----------
Confidence 3445566777777777766677777777776666533 456789999999998 666652
Q ss_pred ccccCCCccCCcccchhhhHhhHHHHHHHHHccCC-----------HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 004273 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN-----------SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342 (764)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 342 (764)
.+|..+..+|...|+ +++|.+.|++..+. .|+...|...+..+
T Consensus 76 --------------------~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~---- 129 (145)
T d1zu2a1 76 --------------------EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT---- 129 (145)
T ss_dssp --------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH----
T ss_pred --------------------HHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH----
Confidence 578888877766543 56777777777664 56666655544433
Q ss_pred ChhHHHHHHHHHHHCCC
Q 004273 343 GLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 343 ~~~~a~~~~~~m~~~~~ 359 (764)
..+.+++.+..+.|+
T Consensus 130 --~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 --AKAPQLHAEAYKQGL 144 (145)
T ss_dssp --HTHHHHHHHHHHSSS
T ss_pred --HHHHHHHHHHHHHhc
Confidence 355666666665553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.81 E-value=0.03 Score=47.16 Aligned_cols=71 Identities=10% Similarity=0.040 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 004273 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 653 (764)
..|+.+..+|.+.|++++|+..++...... +.+...|..+..++...|++++|+..|+++++ +.|+.....
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~ 135 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAAR 135 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 345667778888899999999998888643 45677888888889999999999999999886 556554433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.78 E-value=0.0071 Score=51.32 Aligned_cols=68 Identities=6% Similarity=-0.013 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 193 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
...|..+-.++.+.|++++|...+..+++-.+.++.+|..+..+|...|+++.|+..|++..+ +.|+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n 144 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPED 144 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCC
Confidence 345666777889999999999999999998899999999999999999999999999999998 56654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.70 E-value=0.00076 Score=62.23 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=32.1
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004273 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 150 (764)
+.|++++|++.+++.++.. +.|...+..+...|+..|++++|.+.|+...+
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4566666666666666654 44556666666666666666666666666654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.64 E-value=0.00097 Score=61.47 Aligned_cols=52 Identities=17% Similarity=0.098 Sum_probs=36.1
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.+.|++++|.+.++..++..|.|...+..+...++..|++++|.+.|+...+
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456666666666666666666777777777777777777777777777666
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.59 E-value=0.0082 Score=49.28 Aligned_cols=102 Identities=8% Similarity=-0.094 Sum_probs=58.3
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhH
Q 004273 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
|-+.+.+++|+..|+...+.+ |.+..++..+..+|...+++..+.+ ..+.+++
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~ 59 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQE 59 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHH
Confidence 344555667777776665543 2344455555555544333222111 1223345
Q ss_pred HHHHHHHHHccCCCCHHhHHHHHHHhhccC-----------CHHHHHHHHHHHHHhhhcccc
Q 004273 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLR-----------DLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~~~~~~ 262 (764)
|...|+...+-.|.+..+|..+..+|...| .++.|.+.|++..+ +.|+.
T Consensus 60 Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~ 119 (145)
T d1zu2a1 60 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDN 119 (145)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCH
Confidence 666666666656666666666666665543 36788899998887 67765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.98 E-value=0.045 Score=45.31 Aligned_cols=103 Identities=19% Similarity=0.069 Sum_probs=57.3
Q ss_pred HHHHH--HHHHHccCCHHHHHHHHHHHhhhcCCCCC----------hhhhHHHHHHHhccCCHHHHHHHHHHHHhc----
Q 004273 124 CYLLM--MQALCKGGYLEEASNLIYFLGERYGIYPI----------LPVYNSFLGACAKLHSMVHANLCLDLMDSR---- 187 (764)
Q Consensus 124 ~~~~l--i~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 187 (764)
+|..+ ...+...|++++|+..|++..+-..-.|+ ...|+.+..+|.+.|++++|...+++..+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 44555667777777777776543322222 234566666666666666666666655431
Q ss_pred -CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 188 -MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 188 -g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
...++... ....+++.+..+|...|++++|+..|++..+
T Consensus 89 ~~~~~~~~~-----------------------------~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGK-----------------------------LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHH-----------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccc-----------------------------hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111000 0112355566677777777777777777765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.81 E-value=0.12 Score=42.45 Aligned_cols=92 Identities=11% Similarity=-0.015 Sum_probs=57.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-CCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCH
Q 004273 586 IKILLDYGDFDEALNLLDLVSLE-GIPHD----------VLLYNTILKKACEKGRIDVIEFIIEQMHQN-----KVQPDP 649 (764)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~-~~~p~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~ 649 (764)
...+.+.|++++|++.|++..+. .-.|+ ...|+.+..+|...|++++|...+++.++. ...++.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33445567777777777766541 11111 346777777788888888888777776641 122221
Q ss_pred h-----hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004273 650 S-----TCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 650 ~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
. .++.+-.+|...|++++|++.|++...
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 344455688889999999988887543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.036 Score=41.22 Aligned_cols=63 Identities=6% Similarity=-0.165 Sum_probs=32.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCC----CCC-hhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004273 125 YLLMMQALCKGGYLEEASNLIYFLGERYGI----YPI-LPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+-.+...+.+.|++++|+..|++..+.... .++ ..+++.|..++.+.|++++|+..+++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 334555566666666666666554332111 111 234555666666666666666666665553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.18 E-value=0.05 Score=40.40 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=35.8
Q ss_pred HHHHHHhccChhHHHHHHHHHHcc-------CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 199 LLKLAVWQKNLSAVHEIWEDYIKH-------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
+-..+.+.|++++|...|++..+. ......+++.|..+|.+.|++++|+..++++.+ +.|+.
T Consensus 11 lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~ 79 (95)
T d1tjca_ 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (95)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCC
Confidence 334444555555555555444431 111234566777777777777777777777776 55554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.66 E-value=0.62 Score=35.26 Aligned_cols=138 Identities=12% Similarity=0.046 Sum_probs=89.2
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004273 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|..++..++..+..... +..-||-.|--....-+-+...+.++.+..-+.+. ..+++.....
T Consensus 15 dG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~vv~ 77 (161)
T d1wy6a1 15 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSVVE 77 (161)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHHHH
T ss_pred hhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHHHHH
Confidence 366666666666665542 33344444444444445555566666554333222 2233333333
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhc
Q 004273 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 259 (764)
.+-.+- .++.-+...++....+|.-++-.+++..+.+...+++...-.+..+|-+.|...++.+++.+.-+.|++
T Consensus 78 C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 78 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 322211 244455667778888999999999999988888999999999999999999999999999999988875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.46 E-value=0.63 Score=36.60 Aligned_cols=111 Identities=7% Similarity=-0.125 Sum_probs=61.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004273 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD----YGDFDEAL 599 (764)
Q Consensus 524 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 599 (764)
+.++|+++|++..+.|.. .. ...+. .....+.++|..++++..+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~-~a--~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-FG--CLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-TH--HHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh-hh--hhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 456677777776666522 21 11121 223356677777777777665 33444445555543 34567777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 004273 600 NLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDVIEFIIEQMHQNKV 645 (764)
Q Consensus 600 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~ 645 (764)
++|++..+.| ++.....|-..|.. ..|.++|.++|++..+.|.
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 7777776655 23334444444443 3466677777777666553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.33 E-value=1.2 Score=33.71 Aligned_cols=120 Identities=8% Similarity=-0.009 Sum_probs=51.5
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-CCC----------------CCHHHHH
Q 004273 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD-GFY----------------PQTMTYT 583 (764)
Q Consensus 521 ~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~----------------p~~~~~~ 583 (764)
..|..++..++..+.... .+..-||-+|--....-+-+.....++.+-+. .+. .+...++
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vd 90 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN 90 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHH
Confidence 345566666666665543 23444555554444444444444444433321 000 1122233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004273 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 644 (764)
.-++.+...|+-|.-.++++.+...+ +|++...-.+..+|.+-|+..++.+++.+.-+.|
T Consensus 91 lALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 91 KALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33444444444444444444433322 3444444444444444444444444444444444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.17 E-value=0.82 Score=35.88 Aligned_cols=110 Identities=5% Similarity=-0.143 Sum_probs=65.4
Q ss_pred CcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc----cCCHHHHH
Q 004273 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK----GGYLEEAS 142 (764)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 142 (764)
++++|++.|++..+.+ ++..+..|.. ....+.+.|.+.+++..+.| ++..+..|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 4567777777776665 2222333332 33457778888888877776 34444455555543 34677888
Q ss_pred HHHHHHhhhcCCCCChhhhHHHHHHHhc----cCCHHHHHHHHHHHHhcC
Q 004273 143 NLIYFLGERYGIYPILPVYNSFLGACAK----LHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 188 (764)
++|++..+. + +......|-..|.. ..|.++|.++|+...+.|
T Consensus 80 ~~~~~aa~~-g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGL-N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhcc-C---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 888777543 2 23344445444443 356777777777766655
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=88.82 E-value=11 Score=36.41 Aligned_cols=139 Identities=7% Similarity=-0.090 Sum_probs=78.6
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhC--CCChhHHHHHHHHHHHcCc-cccHHHHHHHHHHHH
Q 004273 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCAR--SPDPLFVMETWRMMEEKEI-GLNNKCYLLMMQALC 133 (764)
Q Consensus 57 ~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~ 133 (764)
..+....+.|+...+..+...+.. .+. ..|...-..-.. .....+...+ +.+..- +.........+..+.
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L~d--ypL--~pYl~~~~l~~~~~~~~~~~i~~F---l~~~p~~P~~~~lr~~~l~~L~ 83 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGLKD--YPL--YPYLEYRQITDDLMNQPAVTVTNF---VRANPTLPPARTLQSRFVNELA 83 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTT--STT--HHHHHHHHHHHTGGGCCHHHHHHH---HHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhhhcC--CCC--HHHHHHHHHHhccccCCHHHHHHH---HHHCCCChhHHHHHHHHHHHHH
Confidence 346678889999999999888843 222 233322222222 2333333333 333321 223334455577888
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccCh
Q 004273 134 KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
+.+++......+. ..+++...--....+..+.|+.+.|...+..+-..|.. ....+..++..+...|.+
T Consensus 84 ~~~~w~~~~~~~~------~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~~~l 152 (450)
T d1qsaa1 84 RREDWRGLLAFSP------EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQ 152 (450)
T ss_dssp HTTCHHHHHHHCC------SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCS
T ss_pred hccCHHHHHHhcc------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCCC
Confidence 8899877554332 22334433345667778889999999888877665432 444555566655554443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.27 E-value=3.6 Score=29.38 Aligned_cols=45 Identities=7% Similarity=0.018 Sum_probs=24.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004273 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
+.+-++.+....+-|++.+..+.+++|.+-+|+..|.++++-.+.
T Consensus 25 ~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 25 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444445556666666666666666666666666655543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.17 E-value=3.6 Score=29.39 Aligned_cols=60 Identities=5% Similarity=-0.113 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHH
Q 004273 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (764)
|.-++.+-++.+-...+.|++....+.|++|.+.+|+..|.++++.+.....++...|..
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~y 80 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPY 80 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 445566666666666777777777777777777777777777777766433333334433
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.62 E-value=4.5 Score=30.68 Aligned_cols=54 Identities=11% Similarity=-0.016 Sum_probs=35.3
Q ss_pred cChhHHHHHHHHHHccCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 207 KNLSAVHEIWEDYIKHYSLSI-FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
.+++++..+++.+.+..+.+. ..+..|.-+|.+.|+++.|.+.++.+.+ +.|+.
T Consensus 52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n 106 (124)
T d2pqrb1 52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCc
Confidence 344566666666665544443 4555666677788888888888888877 56654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.48 E-value=7.4 Score=29.41 Aligned_cols=70 Identities=7% Similarity=0.003 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh
Q 004273 578 QTMTYTALIKILLDYG---DFDEALNLLDLVSLEGIPHDV-LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 578 ~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
++.+--....+++++. ++++++.+++++.... +.+. ..+-.|.-+|.+.|++++|.+.++.+++ +.|+..
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 3333333444444432 2345555555554321 1121 2333444455555566666655555553 444443
|