Citrus Sinensis ID: 004290

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760---
Protein Sequence
MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS
Secondary Structure (PSIPRED)
ccccccccccEEEEEEcccccccccccccEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEcccccEEEEEccccccccEEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccccEEcccccccEEEEEEEccccEEEEEEEccccEEEEEcccccccccccccccccEEEEEEcccccEEEEccccccEEEEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccEEEEcccccccccccccEEEEEEEcccccEEEEEEcccEEEEEEccccccccEEEEccccccEEEEccccccccccccccccccccccccccEEcccccccHHHHHHHccccccccccHHHHHHHHHHcccccccccccccccHHHHHcEEEEEcccccHHHHHHccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccEEEcccccccccccccccEEEEEEccccEEEEEEcccccEEEEEEEccccccccccccccEEEccccccccccEEEccccccccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEccccccccEEcccccccccHHHHHHHcccEEEcccccccccHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEcccccEEEEcccccEEEEEEccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEcccccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEcccccccEEEEEEccccccccEEcccccccccEEEEEEccccccEEEEEccccEEEEEEcccccccccccccccccccEEEEccccEEEccccccEEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEccccccEEEEEEEcccccEEEccccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEcccccEEEEEEccccccccccccEEEcccccEEEEccccccEEEEEEcccccEEEccccccccEEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEcccccEEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEHEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEccccccEEEEcccccccEEEEEEEEcccccEEEccccccEEEHHHcccccccccccccccccEEccc
Coil and Loop (DISEMBL)
menfpfhdgsiydmldtrhtdtrpdvnhsLQMHSSLVRRLSQereleghqgcvnaiswnskgsllisgsddthinvWSYSSRKLLHSIetghsanvfctkfvpetsdelvvsgagdaEVRLFNlsrfsgrglddnaitpsalyqcHTRRVKKLAVEvgnphvvwsasedgtlrqhdfrqgsscppagsshqECRNILLDLrcgakrsladppkqtlslkscdisstrphlllvggsdafarlydrrmlppltscqkrmspppcvnyfcpmhlsehgrsslhlthvtfspngEEVLLSYSGEHVYLMDVnhaggramrytvgdaskimsftptlnglelqppihdflQTNIRVRGEVATGLGKCRMLVEIARNsleegkhpyygieaCNEVLEghlsgigpmlRHECLCIRAALLLKRKWKNDAQMAIRDCynarridsssfRAHLYMSEALEQLCKYKEALDFAIAAqcldpsnsvmAEKVENIKKHIAAAEteknnkandggarseprtgrvlsLSDIIYrseansdasqdgprseredsdydeevevdfhtsvpgdegrdveanflhgslnvrihrrgdsaretvdangssgspssssqndripyqpetVIDMKQRYVGhcnvgtdikqasflgqrgdyiasgsddgrwfIWEKQTGRLIKMLLgdeavvncvqchpfdcvvatsgidntikiwtpsasvpsivsggaagpdTADVLEAMESNQRKLSRNREHSLSYELLERFhmhefsegslrpfecaqs
Flexible Loop (DISEMBL)
menfpfhdgsiydMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSrfsgrglddnaitpsalyqCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRsladppkqtlslkscdisstrphLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAaaeteknnkandggarseprtgrVLSLSDIIYrseansdasqdgprseredsdydeevEVDFHtsvpgdegrdvEANFLHGSLNVRIHRRGDSAREtvdangssgspssssqndriPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIasgsddgrwFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMEsnqrklsrnreHSLSYELLERFHMhefsegslrpfecaqs
Low Complexity Region (SEG)
MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIaaaeteknnkanDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPrseredsdydeevevdFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANgssgspssssQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS
Disordered region (IsUnstruct)
************************************************HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA**************************CRNILLDLRCGA****************CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP**********************************************************************************************FLH*****************************************TVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASV*************************************************************
Disordered Region (DISOPRED)
MENFPFHDGSIYDMLDTRHTDT*PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL******************VRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDA**************RIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT*DVL*AME*NQRKLSRNREHSLSYELLERFHMHE**************
Disordered Region (DISEMBL)
MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD**************QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEK**************TGRVLSLSDIIYRSE*********************EVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRG************************IPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS
Disordered Region (DISPRO)
*ENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFEC***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKxxxxxxxxxxxxxxxxxxxxxGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	763	2.2.26 [Sep-21-2011]
Q8N5D0	677	WD and tetratricopeptide	yes	no	0.551	0.621	0.305	1e-45
Q80ZK9	677	WD and tetratricopeptide	yes	no	0.487	0.549	0.295	1e-43
Q9DC22	876	DDB1- and CUL4-associated	no	no	0.377	0.328	0.313	3e-34
Q58WW2	860	DDB1- and CUL4-associated	no	no	0.377	0.334	0.310	9e-34
Q5R9B8	860	DDB1- and CUL4-associated	no	no	0.377	0.334	0.310	1e-33
O94527	809	WD repeat protein iqw1 OS	yes	no	0.440	0.415	0.290	1e-33
Q5R448	597	DDB1- and CUL4-associated	no	no	0.342	0.437	0.288	4e-28
Q5TAQ9	597	DDB1- and CUL4-associated	no	no	0.342	0.437	0.285	3e-27
Q5U2M6	591	DDB1- and CUL4-associated	no	no	0.306	0.395	0.296	4e-27
Q8N7N5	591	DDB1- and CUL4-associated	no	no	0.342	0.441	0.282	9e-27

>sp|Q8N5D0|WDTC1_HUMAN WD and tetratricopeptide repeats protein 1 OS=Homo sapiens GN=WDTC1 PE=1 SV=2

 Score =  185 bits (470), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 152/497 (30%), Positives = 221/497 (44%), Gaps = 76/497 (15%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN
Sbjct: 33  FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +F  KF+P   D ++++GA D++V + +L+                ++  HT RVK++A 
Sbjct: 93  IFSVKFLPHAGDRILITGAADSKVHVHDLT----------VKETIHMFGDHTNRVKRIAT 142

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAKRSLADPPK 213
               P+  WSA+EDG +RQ+D R+        S H E   +L+DL   CG          
Sbjct: 143 APMWPNTFWSAAEDGLIRQYDLRE-------NSKHSE---VLIDLTEYCG---------- 182

Query: 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC----- 268
           Q +  K   ++    + L VG S  F RLYD RM+       K+ SP   V+ FC     
Sbjct: 183 QLVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMIHNHRKSMKQ-SPSAGVHTFCDRQKP 241

Query: 269 --------------PMHLSEHGR--SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312
                         P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +  
Sbjct: 242 LPDGAAQYYVAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY-- 299

Query: 313 GRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRG---EVATGLGKCRMLVEI 369
            +   YT     K  S     NG      + + +   + +      +    G     VE+
Sbjct: 300 -KQRPYTFLLPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESRGHVSPQVEL 358

Query: 370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR--HECLCI--RAALLLKRKWKNDAQM 425
               LE  K       AC +  +        + R  H  +    RAA  +KRKW  D   
Sbjct: 359 P-PYLERVKQQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYD 417

Query: 426 AIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKV---- 481
           A+RDC  A  ++    +AH  ++  L +L    EAL      +CLD       E+     
Sbjct: 418 ALRDCLKAISLNPCHLKAHFRLARCLFELKYVAEAL------ECLDDFKGKFPEQAHSSA 471

Query: 482 -ENIKKHIAAAETEKNN 497
            + + + I AA   KN+
Sbjct: 472 CDALGRDITAALFSKND 488

Homo sapiens (taxid: 9606)

>sp|Q80ZK9|WDTC1_MOUSE WD and tetratricopeptide repeats protein 1 OS=Mus musculus GN=Wdtc1 PE=1 SV=1

 Score =  178 bits (452), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 144/488 (29%), Positives = 212/488 (43%), Gaps = 116/488 (23%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN
Sbjct: 33  FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +F  KF+P   D ++++GA D++V + +L+                ++  HT RVK++A 
Sbjct: 93  IFSVKFLPHAGDRILITGAADSKVHVHDLT----------VKETIHMFGDHTNRVKRIAT 142

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAKRSLADPPK 213
               P+  WSA+EDG +RQ+D R+        S H E   +L+DL   CG          
Sbjct: 143 APMWPNTFWSAAEDGLIRQYDLRE-------NSKHSE---VLIDLTEYCGP--------- 183

Query: 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC----- 268
             +  K   ++    + L VG S  F RLYD RM+        R SP   V+ FC     
Sbjct: 184 -MVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMIHNHRKSM-RQSPSAGVHTFCDRQKP 241

Query: 269 --------------PMHLSEHGR--SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312
                         P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +  
Sbjct: 242 LPDGAAQYYVAGHLPVKLPDYNSRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY-- 299

Query: 313 GRAMRYTV-------------GDASKIMSFTPTLNGLEL----------------QPPIH 343
            +   YT              G  S         NGL L                Q  + 
Sbjct: 300 -KQRPYTFLLPRKCHSVEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESKGCISPQVELP 358

Query: 344 DFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR 403
            +L+  ++ +   A    +    +++   ++++  H        N +L G+         
Sbjct: 359 PYLE-RVKQQANEAFACQQWTQAIQLYSQAVQKAPH--------NAMLYGN--------- 400

Query: 404 HECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDF 463
                 RAA  +KRKW  D   A+RDC  A  ++    +AH  ++  L +L    EAL  
Sbjct: 401 ------RAAAYMKRKWDGDHYDALRDCLKAISLNPCHLKAHFRLARCLFELKYVAEAL-- 452

Query: 464 AIAAQCLD 471
               +CLD
Sbjct: 453 ----ECLD 456

Mus musculus (taxid: 10090)

>sp|Q9DC22|DCAF6_MOUSE DDB1- and CUL4-associated factor 6 OS=Mus musculus GN=Dcaf6 PE=1 SV=1

 Score =  147 bits (371), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 153/322 (47%), Gaps = 34/322 (10%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            ++RL  E  L  H GCVN I WN  G  ++SGSDDT + + +  SRK+L +I +GH AN
Sbjct: 37  FIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRAN 96

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +F  KF+P T D+ +VS +GD  +   N+ +       D        + CH     ++  
Sbjct: 97  IFSAKFLPCTDDKQIVSCSGDGVIFYTNIEQ-------DAETNRQCQFTCHYGTTYEIMT 149

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR-NILLDLRCGAKRSLADPPKQ 214
              +P+   S  EDGT+R  D R  +SC     + ++C+ +IL++ R  A      PP  
Sbjct: 150 VPNDPYTFLSCGEDGTVRWFDTRIKTSC-----TKEDCKDDILINCRRAATSVAICPPV- 203

Query: 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLS 273
                        P+ L VG SD+  R+YDRRML    T           V  F P HLS
Sbjct: 204 -------------PYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLS 250

Query: 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333
                S  +T + +S +G+E+L+SYS +++YL D      R ++    +  +     P +
Sbjct: 251 NK---SCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPV 307

Query: 334 NGLELQPPIHDFLQTNIRVRGE 355
             L L+    D+  T  R R E
Sbjct: 308 KRLRLR---GDWSDTGPRARPE 326

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|Q58WW2|DCAF6_HUMAN DDB1- and CUL4-associated factor 6 OS=Homo sapiens GN=DCAF6 PE=1 SV=1

 Score =  145 bits (367), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 154/322 (47%), Gaps = 34/322 (10%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            ++RL  E  L  H GCVN I WN  G  ++SGSDDT + + +  SRK+L +I +GH AN
Sbjct: 37  FIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRAN 96

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +F  KF+P T+D+ +VS +GD  +   N+ +       D        + CH     ++  
Sbjct: 97  IFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQ-------DAETNRQCQFTCHYGTTYEIMT 149

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR-NILLDLRCGAKRSLADPPKQ 214
              +P+   S  EDGT+R  D R  +SC     + ++C+ +IL++ R  A      PP  
Sbjct: 150 VPNDPYTFLSCGEDGTVRWFDTRIKTSC-----TKEDCKDDILINCRRAATSVAICPPI- 203

Query: 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLS 273
                        P+ L VG SD+  R+YDRRML    T           V  F P HL+
Sbjct: 204 -------------PYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLN 250

Query: 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333
                S  +T + +S +G+E+L+SYS +++YL D      R ++    +  +     P +
Sbjct: 251 NK---SCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPV 307

Query: 334 NGLELQPPIHDFLQTNIRVRGE 355
             L L+    D+  T  R R E
Sbjct: 308 KRLRLR---GDWSDTGPRARPE 326

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5R9B8|DCAF6_PONAB DDB1- and CUL4-associated factor 6 OS=Pongo abelii GN=DCAF6 PE=2 SV=2

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 154/322 (47%), Gaps = 34/322 (10%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            ++RL  E  L  H GCVN I WN  G  ++SGSDDT + + +  SRK+L +I +GH AN
Sbjct: 37  FIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRAN 96

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +F  KF+P T+D+ +VS +GD  +   N+ +       D        + CH     ++  
Sbjct: 97  IFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQ-------DAETNRQCQFTCHYGTTYEIMT 149

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR-NILLDLRCGAKRSLADPPKQ 214
              +P+   S  EDGT+R  D R  +SC     + ++C+ +IL++ R  A      PP  
Sbjct: 150 VPNDPYTFLSCGEDGTVRWFDTRIKTSC-----TKEDCKDDILINCRRAATSVAICPPI- 203

Query: 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLS 273
                        P+ L VG SD+  R+YDRRML    T           V  F P HL+
Sbjct: 204 -------------PYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLN 250

Query: 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333
                S  +T + +S +G+E+L+SYS +++YL D      R ++    +  +     P +
Sbjct: 251 NK---SCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPV 307

Query: 334 NGLELQPPIHDFLQTNIRVRGE 355
             L L+    D+  T  R R E
Sbjct: 308 KRLRLR---GDWSDTGPRARPE 326

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|O94527|IQW1_SCHPO WD repeat protein iqw1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=iqw1 PE=1 SV=1

 Score =  145 bits (365), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 181/386 (46%), Gaps = 50/386 (12%)

Query: 15  LDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHI 74
           LD R    R  ++  +  +S+ +  +  ++EL GH GCVN + W++ G  L+SGSDDT +
Sbjct: 11  LDYRDWFQR-KISRDIYGNSTWLTGIDLQKELTGHTGCVNTLDWSADGEFLLSGSDDTRL 69

Query: 75  NVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133
            VW  ++  K  H I TGH  N+F  KFVP +++  ++S +GD  ++LF+L      G+D
Sbjct: 70  IVWDVFNEYKPRHLISTGHVQNIFSAKFVPYSNNRQILSASGDKLIKLFDLDSSKEGGMD 129

Query: 134 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193
               T +  + C    VK + V   N H     SEDGT RQ+D R+   C    +   +C
Sbjct: 130 HGMETQTRCWSCALDSVKNI-VPCDNGHTFLVCSEDGTARQYDIREPHVC----NQDLDC 184

Query: 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253
            +IL++          +P +  ++L +  +S + P+   +GG+  +A LYDRRM+     
Sbjct: 185 PSILVNY---------NPYR--INLYTITMSPSNPYYFAIGGTHPYAFLYDRRMVKKSFR 233

Query: 254 CQKRMSPPP-----CVNYFCP-MHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLM 306
               M+  P     CV  F P    +  G    ++T   FS  N  E+L+S++ ++VYL 
Sbjct: 234 DDWTMNTSPEKDCRCVRKFSPDGSCNSQGILDRYITCCQFSAANPNELLVSWNSDYVYLF 293

Query: 307 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLE---LQPPIHDFLQTNIRVRGEVA----TG 359
            V+                  S+TPT N +E    +P     LQT    R   +      
Sbjct: 294 HVHEDK---------------SYTPTFNKIEDSNKKPSKPSLLQTQPLKRKNYSPWYKNN 338

Query: 360 LGKCRMLVEIARN---SLEEGKHPYY 382
            G       ++RN   + +  KH +Y
Sbjct: 339 FGASTPASRVSRNPYTAAQPRKHTFY 364

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5R448|DCAF8_PONAB DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1

 Score =  127 bits (318), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 143/322 (44%), Gaps = 61/322 (18%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            V+R   +  LEGH GCVN + +N +G+ L SGSDD  + VW +  R+ +   E+GH +N
Sbjct: 179 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 238

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVK-- 151
           VF  KF+P + D  +   A D +VR+  LS                  QC  +T+RV   
Sbjct: 239 VFQAKFLPNSGDSTLAMRARDGQVRVAELS----------------ATQCCKNTKRVAQH 282

Query: 152 -----KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206
                KLA+E  +P    SA ED  +   D RQ                     R  +K 
Sbjct: 283 KGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQD--------------------RPASKL 322

Query: 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266
            +    ++ + L +  ++    H   VGG D F R+YD+R +               +  
Sbjct: 323 VVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI-------DENENNGVLKK 375

Query: 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR--AMRYTVGDAS 324
           FCP HL  +G S  ++T + +S +G E+L SY+ E +YL + +H+ G     RY      
Sbjct: 376 FCPHHLV-NGESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYVKRY------ 428

Query: 325 KIMSFTPTLNGLELQPPIHDFL 346
           K      T+ G+    P  +F+
Sbjct: 429 KGHRNNATVKGVNFYGPKSEFV 450

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q5TAQ9|DCAF8_HUMAN DDB1- and CUL4-associated factor 8 OS=Homo sapiens GN=DCAF8 PE=1 SV=1

 Score =  124 bits (311), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 142/322 (44%), Gaps = 61/322 (18%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            V+R   +  LEGH GCVN + +N +G+ L SGSDD  + VW +  R+ +   E+GH +N
Sbjct: 179 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 238

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVK-- 151
           VF  KF+P + D  +   A D +VR+  LS                  QC  +T+RV   
Sbjct: 239 VFQAKFLPNSGDSTLAMCARDGQVRVAELS----------------ATQCCKNTKRVAQH 282

Query: 152 -----KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206
                KLA+E  +P    SA ED  +   D RQ                     R  +K 
Sbjct: 283 KGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQD--------------------RPASKL 322

Query: 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266
            +    ++ + L +  ++    H   VGG D F R+YD+R +               +  
Sbjct: 323 VVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI-------DENENNGVLKK 375

Query: 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR--AMRYTVGDAS 324
           FCP HL  +  S  ++T + +S +G E+L SY+ E +YL + +H+ G     RY      
Sbjct: 376 FCPHHLV-NSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYVKRY------ 428

Query: 325 KIMSFTPTLNGLELQPPIHDFL 346
           K      T+ G+    P  +F+
Sbjct: 429 KGHRNNATVKGVNFYGPKSEFV 450

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5U2M6|DCAF8_RAT DDB1- and CUL4-associated factor 8 OS=Rattus norvegicus GN=Dcaf8 PE=2 SV=1

 Score =  124 bits (310), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 131/287 (45%), Gaps = 53/287 (18%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            V+R   +  LEGH GCVN + +N +G+ L SGSDD  + VW +  R+ +   E+GH +N
Sbjct: 173 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 232

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVK-- 151
           VF  KF+P + D  +   A D +VR+  LS                  QC  +T+RV   
Sbjct: 233 VFQAKFLPNSGDSTLAMCARDGQVRVAELS----------------ATQCCKNTKRVAQH 276

Query: 152 -----KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206
                KLA+E  +P    SA ED  +   D RQ                     R  +K 
Sbjct: 277 KGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQD--------------------RPASKL 316

Query: 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266
            +    ++ + L +  ++    H   VGG D F R+YD+R +               +  
Sbjct: 317 VVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI-------DENENNGVLKK 369

Query: 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 313
           FCP HL  +  S  ++T + +S +G E+L SY+ E +YL + +H+ G
Sbjct: 370 FCPHHLV-NSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 415

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|Q8N7N5|DCAF8_MOUSE DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1

 Score =  122 bits (307), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 142/322 (44%), Gaps = 61/322 (18%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            V+R   +  LEGH GCVN + +N +G+ L SGSDD  + VW +  R+ +   E+GH +N
Sbjct: 173 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 232

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVK-- 151
           VF  KF+P + D  +   A D +VR+  LS                  QC  +T+RV   
Sbjct: 233 VFQAKFLPNSGDSTLAMCARDGQVRVAELS----------------ATQCCKNTKRVAQH 276

Query: 152 -----KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206
                KLA+E  +P    SA ED  +   D RQ                     R  +K 
Sbjct: 277 KGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQD--------------------RPASKL 316

Query: 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266
            +    ++ + L +  ++    H   VGG D + R+YD+R +               +  
Sbjct: 317 VVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQYVRIYDQRKI-------DENENNGVLKK 369

Query: 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM--RYTVGDAS 324
           FCP HL  +  S  ++T + +S +G E+L SY+ E +YL + +H+ G     RY      
Sbjct: 370 FCPHHLV-NSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRY------ 422

Query: 325 KIMSFTPTLNGLELQPPIHDFL 346
           K      T+ G+    P  +F+
Sbjct: 423 KGHRNNATVKGVNFYGPKSEFV 444

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	763
224081993	756	predicted protein [Populus trichocarpa]	0.990	1.0	0.794	0.0
255545904	761	WD and tetratricopeptide repeat protein,	0.997	1.0	0.778	0.0
302142032	762	unnamed protein product [Vitis vinifera]	0.998	1.0	0.762	0.0
449436964	759	PREDICTED: WD and tetratricopeptide repe	0.994	1.0	0.731	0.0
297811205	755	hypothetical protein ARALYDRAFT_487925 [	0.985	0.996	0.716	0.0
334187604	754	WD and tetratricopeptide repeats protein	0.985	0.997	0.717	0.0
18416416	757	WD and tetratricopeptide repeats protein	0.986	0.994	0.714	0.0
357465333	758	DDB1- and CUL4-associated factor [Medica	0.988	0.994	0.717	0.0
356515704	762	PREDICTED: WD and tetratricopeptide repe	0.994	0.996	0.715	0.0
356508017	762	PREDICTED: WD and tetratricopeptide repe	0.994	0.996	0.712	0.0

>gi|224081993|ref|XP_002306549.1| predicted protein [Populus trichocarpa] gi|222855998|gb|EEE93545.1| predicted protein [Populus trichocarpa]

 Score = 1257 bits (3252), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/763 (79%), Positives = 677/763 (88%), Gaps = 7/763 (0%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M+N+ FHDG+I +ML++RH   RPDVNHSLQMHSSL+RRLSQERELEGHQGCVN+I+WNS
Sbjct: 1   MDNYGFHDGNICNMLESRH---RPDVNHSLQMHSSLIRRLSQERELEGHQGCVNSIAWNS 57

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           KGSLLISGSDDT +N+W+Y+ RKLLHSI+TGHSAN+FCTKFVPETSDELVV+GAGDAEVR
Sbjct: 58  KGSLLISGSDDTRMNIWNYAGRKLLHSIDTGHSANIFCTKFVPETSDELVVAGAGDAEVR 117

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFNLSR SGR  DDN+I PSALYQCHTRRVKKLAVEVGNP+VVWSASEDGTLRQHDFR+G
Sbjct: 118 LFNLSRLSGRSPDDNSIAPSALYQCHTRRVKKLAVEVGNPNVVWSASEDGTLRQHDFREG 177

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAGSSH ECRNILLDLR GAKRSLADPPKQTL+L+SCDIS++RPHLLLVGGSDAFA
Sbjct: 178 ASCPPAGSSH-ECRNILLDLRSGAKRSLADPPKQTLALRSCDISTSRPHLLLVGGSDAFA 236

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPLTSC+KRMSPPPCVNYFCPMHLSE GRSSLHLTHVTFSPNG+EVLLSYSG
Sbjct: 237 RLYDRRMLPPLTSCRKRMSPPPCVNYFCPMHLSERGRSSLHLTHVTFSPNGDEVLLSYSG 296

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VNH+GG A+RYT GD SK+M+F PTLNGLELQP      +     +   ++ L
Sbjct: 297 EHVYLMNVNHSGGTAVRYTTGDTSKLMTFAPTLNGLELQPLPSCVFKRQSHSKTNGSSML 356

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KCR LV+IA  SLEEG   +YGIEACNEVL+GH   IGP LRHECLCIRAALLLKRKWK
Sbjct: 357 EKCRRLVQIAEKSLEEGTCYFYGIEACNEVLDGHGRVIGPTLRHECLCIRAALLLKRKWK 416

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           ND  MAIRDC+NARRIDSSSFRA  YMSEAL +L K+KEAL+F+IAAQC  P N+ +A  
Sbjct: 417 NDVHMAIRDCFNARRIDSSSFRALYYMSEALSRLGKHKEALEFSIAAQCSAPGNTEVAVL 476

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           +E+I+K++A A   K++K NDG  RSE R GR LSLSDI+Y SEANS+AS DGP S+RED
Sbjct: 477 MEDIRKNLATA--GKSSKENDGATRSETRNGRALSLSDILYHSEANSEASHDGPGSDRED 534

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSS 600
           SDYDEE+E+DF TSV GDEGRDVE N LHGSLN+RIHR+GDSAR++   NGS GSP SSS
Sbjct: 535 SDYDEELELDFETSVSGDEGRDVEPNILHGSLNLRIHRKGDSARDSSCTNGSCGSP-SSS 593

Query: 601 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR 660
           QNDR PYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDY+ASGSDDGRWFIWEKQTGR
Sbjct: 594 QNDRTPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYVASGSDDGRWFIWEKQTGR 653

Query: 661 LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLE 720
           LIKMLLGDEAVVNC+QCHPFDCVVATSGIDNTIKIWTPSASVPSIV+GGAAGP+T++VLE
Sbjct: 654 LIKMLLGDEAVVNCIQCHPFDCVVATSGIDNTIKIWTPSASVPSIVAGGAAGPETSNVLE 713

Query: 721 AMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 763
           AMESNQR+L  NRE  L +ELLERF MHEF+EG+L PFECAQS
Sbjct: 714 AMESNQRRLCHNREAILPFELLERFRMHEFTEGTLHPFECAQS 756

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545904|ref|XP_002514012.1| WD and tetratricopeptide repeat protein, putative [Ricinus communis] gi|223547098|gb|EEF48595.1| WD and tetratricopeptide repeat protein, putative [Ricinus communis]

 Score = 1253 bits (3242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/763 (77%), Positives = 672/763 (88%), Gaps = 2/763 (0%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M+   FHDG+IY+ L+TR+ D+R D+NHSLQMHSSL+RRLSQERELEGHQGCVN+I+WNS
Sbjct: 1   MDTCGFHDGNIYNFLETRYFDSRRDINHSLQMHSSLIRRLSQERELEGHQGCVNSIAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
            GSLL+SGSDDT +N+WSYS RKLLHSI+TGHSAN+FCTKF+PETSDELVVSGAGDAEVR
Sbjct: 61  TGSLLVSGSDDTRMNIWSYSGRKLLHSIDTGHSANIFCTKFIPETSDELVVSGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFNLSR SGRG DDNAI P ALYQCHT+RVKKLAVEVGNP+VVWSASEDGTLRQHD R+ 
Sbjct: 121 LFNLSRLSGRGPDDNAIAPLALYQCHTKRVKKLAVEVGNPNVVWSASEDGTLRQHDLRED 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           SSCPPAGSS QECRN+LLDLRCGAKRSL DPPKQTL+LKSCDIS+ RPHLLLVGGSDAFA
Sbjct: 181 SSCPPAGSSPQECRNVLLDLRCGAKRSLVDPPKQTLALKSCDISARRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPLTSC+KRM PPPCVNY CPMHLSE GRS LHLTHVTFSP+G+EVLLSYSG
Sbjct: 241 RLYDRRMLPPLTSCRKRMPPPPCVNYICPMHLSERGRSGLHLTHVTFSPSGDEVLLSYSG 300

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VNHAGG +M+YT GDASK+M+F P LNGLELQPP  D  +  +R +  VA+ L
Sbjct: 301 EHVYLMNVNHAGGSSMQYTTGDASKLMTFAPILNGLELQPPPSDISKNGLRFKSYVASTL 360

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KCR L++ A   L++G + +YGIEACNEVL+ H   I P +RH+CLC RAALLLKRKWK
Sbjct: 361 QKCRKLLQFAEKCLDDGANFFYGIEACNEVLDRHGRDISPAIRHDCLCTRAALLLKRKWK 420

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           ND  MAIRDCYNARRIDSSSFRA  YMSEAL QL KYKEALDFA+A+QC+ PS++ +AE 
Sbjct: 421 NDVHMAIRDCYNARRIDSSSFRALYYMSEALSQLGKYKEALDFAVASQCVAPSDTEIAEW 480

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VENIK ++A AE EK NKANDG  +SE R+GR LSLSDI+YRSEA SD SQDGP +ERE+
Sbjct: 481 VENIKNNLAQAEAEKTNKANDGALKSESRSGRALSLSDILYRSEATSDGSQDGP-TEREE 539

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSS 600
           SDYDEE+E+DF TS+ GDEGRD+E N LHGSLN+RIHRRGDS+RET   NGS GSP SSS
Sbjct: 540 SDYDEELELDFETSISGDEGRDIEPNTLHGSLNLRIHRRGDSSRETSCTNGSCGSP-SSS 598

Query: 601 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR 660
            NDR+PYQPETVIDMKQR+VGHCNVGTDIKQASFLG+RG+Y+ASGSDDGRWFIWEKQTGR
Sbjct: 599 HNDRMPYQPETVIDMKQRFVGHCNVGTDIKQASFLGERGEYVASGSDDGRWFIWEKQTGR 658

Query: 661 LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLE 720
           LIKMLLGDEAV+NCVQ HPFDCVVATSGIDNTIKIWTP+ASVPS V+GG+AGP+T+DVL+
Sbjct: 659 LIKMLLGDEAVLNCVQSHPFDCVVATSGIDNTIKIWTPTASVPSNVAGGSAGPETSDVLD 718

Query: 721 AMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 763
            MESNQR+LS NRE  L +ELLERF MHEF+EG+L P ECAQS
Sbjct: 719 VMESNQRRLSHNREVILPFELLERFRMHEFTEGTLHPLECAQS 761

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142032|emb|CBI19235.3| unnamed protein product [Vitis vinifera]

 Score = 1227 bits (3174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/763 (76%), Positives = 663/763 (86%), Gaps = 1/763 (0%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           ME   FHD ++Y+ +D R  D R DV+ SLQMHSSL+RRL+QE ELEGHQGCVN ++WNS
Sbjct: 1   METTNFHDSNLYNFVDGRSIDFRHDVSRSLQMHSSLLRRLTQEGELEGHQGCVNTVAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           +GSLLISGSDDT IN+W+Y SRKLLH IETGHSAN+FC KF+PETSDELV SGAGDAEVR
Sbjct: 61  RGSLLISGSDDTRINIWNYPSRKLLHCIETGHSANIFCAKFIPETSDELVASGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LF+LSR SGRG D+NAITPSAL+QCHTRRVKKLAVEVGNP+VVWSASEDGTLRQHDFR+G
Sbjct: 121 LFHLSRLSGRGPDENAITPSALFQCHTRRVKKLAVEVGNPNVVWSASEDGTLRQHDFREG 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAGSSHQECRN+LLDLRCGAK+SLADPPKQ LSLKSCDISSTRPHLLLVGGSDAFA
Sbjct: 181 ASCPPAGSSHQECRNVLLDLRCGAKKSLADPPKQCLSLKSCDISSTRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPLTSC K M+PPPCVNYFCPMHLS+HGRSSLHLTHVTFSPNGEEVL+SYS 
Sbjct: 241 RLYDRRMLPPLTSCGKTMTPPPCVNYFCPMHLSDHGRSSLHLTHVTFSPNGEEVLISYSA 300

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLMDVNHA G  + Y  GDA K+M+ +P L+G+    P+ D    +  ++  +A  L
Sbjct: 301 EHVYLMDVNHACGSTVCYAPGDALKLMNPSPILDGIGFGSPVSDAFTYDFSMKSNIAAKL 360

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KCR LV+ A   L+EG   +YGIEACNEVL+GH   IGP L+H+CLC RAALLLKRKWK
Sbjct: 361 DKCRKLVQFAERCLKEGTDYFYGIEACNEVLDGHPHEIGPTLKHDCLCTRAALLLKRKWK 420

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           NDA MAIRDC  ARRID+SSF+A  YMSEAL QL K+KEAL+FA+A+QCL P +S +AE+
Sbjct: 421 NDAHMAIRDCNRARRIDTSSFKALFYMSEALLQLNKHKEALEFAVASQCLAPYDSEVAER 480

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VE+IKKH+AAAE EK+NK+NDG  RSE R+GR LSLS+I+YRSEANSDASQDGPRSERED
Sbjct: 481 VEDIKKHLAAAEAEKSNKSNDGVPRSETRSGRFLSLSEILYRSEANSDASQDGPRSERED 540

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSS 600
           SDYDEE+E+DF TSV GDEGRDVE+N LHGSLN+RIHRR DSARET   NG+ GSP +SS
Sbjct: 541 SDYDEELELDFETSVSGDEGRDVESNILHGSLNLRIHRRCDSARETSGTNGACGSP-TSS 599

Query: 601 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR 660
           +ND+  YQPET IDMKQRYVGHCN+GTDIKQASFLG RG+Y+ASGSDDGRWFIW+K+TGR
Sbjct: 600 RNDKTTYQPETAIDMKQRYVGHCNIGTDIKQASFLGCRGEYVASGSDDGRWFIWDKRTGR 659

Query: 661 LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLE 720
           LIKML+GDE VVNCVQCHPFDC VATSGIDNTIKIWTPSA +PSIV+GGAAGP+TADVLE
Sbjct: 660 LIKMLMGDEHVVNCVQCHPFDCTVATSGIDNTIKIWTPSAPIPSIVAGGAAGPETADVLE 719

Query: 721 AMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 763
           AME+NQRKL RNR+  L +ELLERF MH+F EG+L PFEC+QS
Sbjct: 720 AMENNQRKLCRNRDAILPFELLERFRMHDFGEGTLHPFECSQS 762

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436964|ref|XP_004136262.1| PREDICTED: WD and tetratricopeptide repeats protein 1-like [Cucumis sativus] gi|449497029|ref|XP_004160293.1| PREDICTED: WD and tetratricopeptide repeats protein 1-like [Cucumis sativus]

 Score = 1161 bits (3004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/763 (73%), Positives = 642/763 (84%), Gaps = 4/763 (0%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           ME+F FHDG++  +L++RH + R D  + LQMHSS ++RLSQE+ELEGHQGCVNA++WNS
Sbjct: 1   MEDFAFHDGNVCALLESRHINFRQDPAYGLQMHSSFIQRLSQEKELEGHQGCVNAVAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           +GSLLISGSDDT IN+WSYS RKLLHS++TGHSAN+FCTKFVPE SD+LV+SGAGDAEVR
Sbjct: 61  RGSLLISGSDDTRINIWSYSGRKLLHSVDTGHSANIFCTKFVPEMSDDLVLSGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFNLSR  GRG DDN I PSALY+CH RRVKKLAVE+GNP+VVWSASEDGTLRQHDFR+G
Sbjct: 121 LFNLSRLRGRGQDDNPIAPSALYRCHARRVKKLAVEIGNPNVVWSASEDGTLRQHDFREG 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
            SCPP G+SHQEC N+LLDLRCGAKRSLADPP+QTL+LKSCDISSTRPHLLLVGGSDAFA
Sbjct: 181 MSCPPDGASHQECHNVLLDLRCGAKRSLADPPRQTLALKSCDISSTRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPL+S QKRMSPPPCV+YFCPMHLS+  RS LHLTHVTFSPNGEE+LLSYSG
Sbjct: 241 RLYDRRMLPPLSSSQKRMSPPPCVSYFCPMHLSDRVRSGLHLTHVTFSPNGEEILLSYSG 300

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VNH G   M+YT GD SK+MSFTP LNG ELQ  + +      R        L
Sbjct: 301 EHVYLMNVNHGGLGTMQYTSGDVSKLMSFTPVLNGFELQHHVSNLSNNGSRFNLTSIFQL 360

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            + R L++IA   LE G + + GIEACNE+L+G+   IG +L+H+ LC RAALLLKRKWK
Sbjct: 361 DRSRKLLQIAEKCLEGGNY-FGGIEACNEILDGNGRNIGVILKHDSLCTRAALLLKRKWK 419

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           ND  MAIRDCY+AR+ID SSFRAH YM EAL QL ++KEALDFA AAQCL PSNS +AEK
Sbjct: 420 NDVHMAIRDCYSARKIDHSSFRAHYYMCEALSQLGRHKEALDFAFAAQCLAPSNSEVAEK 479

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VE+IK+ +AAAE EK+NK NDG  +S P  G VLSLSD +YRS+ANSD SQDG RSERED
Sbjct: 480 VESIKRDLAAAELEKSNKGNDGALKSAP-LGGVLSLSDFLYRSDANSDVSQDGLRSERED 538

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSS 600
           SDYDEEVE+DF T + GDE  DV++N LHGSLN+RIHRR D +RE V  NGS GSP SSS
Sbjct: 539 SDYDEEVELDFET-LSGDESHDVDSNVLHGSLNLRIHRRIDPSRERVGPNGSCGSP-SSS 596

Query: 601 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR 660
           QND   YQPE VIDMKQRYVGHCN+GTDIKQASFLGQ+G+Y+ASGSDDGRWFIWEK+TGR
Sbjct: 597 QNDATLYQPEPVIDMKQRYVGHCNIGTDIKQASFLGQKGEYVASGSDDGRWFIWEKETGR 656

Query: 661 LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLE 720
           LIK+L+GD AVVNCVQ HPFDC +ATSGIDNTIK+WTP+A VPS+V+GGA GP  ADVL 
Sbjct: 657 LIKILVGDGAVVNCVQSHPFDCAIATSGIDNTIKLWTPTAPVPSVVAGGAVGPQEADVLA 716

Query: 721 AMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 763
            +E+NQR+L RNRE  L +E+LERF MH+FSEGSL PFECAQS
Sbjct: 717 VIENNQRRLCRNREAILPFEILERFRMHDFSEGSLHPFECAQS 759

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811205|ref|XP_002873486.1| hypothetical protein ARALYDRAFT_487925 [Arabidopsis lyrata subsp. lyrata] gi|297319323|gb|EFH49745.1| hypothetical protein ARALYDRAFT_487925 [Arabidopsis lyrata subsp. lyrata]

 Score = 1130 bits (2924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/766 (71%), Positives = 639/766 (83%), Gaps = 14/766 (1%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           MEN  FHDG+I+++L TR  D   +V+  +Q+HSSLVRRLSQE+ELEGHQGCVN ++WNS
Sbjct: 1   MENLSFHDGNIFNLLHTRSQDPSHEVDQRMQLHSSLVRRLSQEQELEGHQGCVNTLAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
            GSLLISGSDD  IN+W+YSSR LLHSI+TGH+AN+FCTKFVPETSDELVVSGAGDAEVR
Sbjct: 61  NGSLLISGSDDLRINIWNYSSRTLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFNLS  SGR  DDNAITPSALYQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+ 
Sbjct: 121 LFNLSHLSGRAEDDNAITPSALYQCHTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRES 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAG++HQECR++LLDLR GAKR+LADPPKQTLSLKSCDIS+TRPHLLLVGGSDAFA
Sbjct: 181 TSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPLTS +KRM PPPCVNYFCPMHLS+ GR++LHLTHVTFSPNGEEVLLSYSG
Sbjct: 241 RLYDRRMLPPLTSSRKRMPPPPCVNYFCPMHLSDRGRTNLHLTHVTFSPNGEEVLLSYSG 300

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VN+  G  ++YT GD   + SF+  L+ +E  P +    Q         AT +
Sbjct: 301 EHVYLMNVNNGTG-ILQYTQGDVDNLFSFSNNLHDVEYPPQVSTTPQNGFHRNCNAAT-V 358

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KC  LVEIA+ SLEEG   +Y IEA NEVL+GH + I   LRHECLC RAALLLKRKWK
Sbjct: 359 KKCTELVEIAKRSLEEGTDVFYAIEAANEVLDGHSNDIDSALRHECLCTRAALLLKRKWK 418

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           NDA MA+RDC+NAR+ID+SSF+AH YMSEAL+QL + KEALDFA AAQ L+PS++ +  K
Sbjct: 419 NDAHMAVRDCHNARKIDASSFKAHYYMSEALQQLGRCKEALDFANAAQHLNPSDADIVAK 478

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VE+IK+ + AA +EKN +   G       T RVLSLSDI+YRSEANSD+S D  RSERED
Sbjct: 479 VESIKRDLQAAGSEKNEETGAG-------TTRVLSLSDILYRSEANSDSSHDMSRSERED 531

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSAR---ETVDANGSSGSPS 597
           SDYDEE+E+D  TS+  DEGRD E+N + GSLN+RIHR GD  +    TVD N SSG+ +
Sbjct: 532 SDYDEELELDIQTSLSDDEGRDPESNAMRGSLNLRIHRVGDDDKPMENTVD-NASSGT-A 589

Query: 598 SSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQ 657
           SSSQNDR  YQPE  IDMK+RYVGHCNVGTDIKQASFLGQRG+YIASGSDDGRWFIWEKQ
Sbjct: 590 SSSQNDRTSYQPEGAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEKQ 649

Query: 658 TGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTAD 717
           TGRL+K+L+GDEAV+NC+QCHPFD VVATSGIDNTIKIW+P+ASVPS+V+GG+AGP TA+
Sbjct: 650 TGRLMKVLVGDEAVLNCIQCHPFDSVVATSGIDNTIKIWSPTASVPSVVAGGSAGPATAN 709

Query: 718 VLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 763
           V+E MESNQ+KLSRNRE+ LS EL++RF M EF+EG+  PFEC QS
Sbjct: 710 VVEVMESNQQKLSRNRENPLSVELMQRFRMQEFAEGNFHPFECTQS 755

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187604|ref|NP_001190286.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana] gi|8979728|emb|CAB96849.1| putative protein [Arabidopsis thaliana] gi|332004229|gb|AED91612.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana]

 Score = 1130 bits (2922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/765 (71%), Positives = 635/765 (83%), Gaps = 13/765 (1%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M+N  FHDG+I+++L TR  D   +V+  +Q HSSLVRRLSQE+ELEGHQGCVNA++WNS
Sbjct: 1   MDNLSFHDGNIFNLLHTRSQDPSHEVDQRMQFHSSLVRRLSQEQELEGHQGCVNALAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
            GSLLISGSDD  IN+W+YSSRKLLHSI+TGH+AN+FCTKFVPETSDELVVSGAGDAEVR
Sbjct: 61  NGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFN SR SGR  DDNAI PSALYQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+ 
Sbjct: 121 LFNTSRLSGRAEDDNAIIPSALYQCHTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRES 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAG++HQECR++LLDLR GAKR+LADPPKQTLSLKSCDIS+TRPHLLLVGGSDAFA
Sbjct: 181 TSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPL S +KRM PPPCVNYFCPMHLSE GR++LHLTHVTFSPNGEEVLLSYSG
Sbjct: 241 RLYDRRMLPPLASSRKRMPPPPCVNYFCPMHLSERGRTNLHLTHVTFSPNGEEVLLSYSG 300

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VN+  G  M+YT GD   + SF+  L+ +E  P +    Q         AT +
Sbjct: 301 EHVYLMNVNNGTG-IMQYTPGDVDNLFSFSNNLHDVESPPQVSTTPQNGFHRSSNAAT-V 358

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KC  LVEIA+ SLEEG   +Y IEA NEVL+ H + I   LRHECLC RAALLLKRKWK
Sbjct: 359 KKCTELVEIAKWSLEEGTDVFYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRKWK 418

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           NDA MA+RDC+NARRID+SSF+AH YMSEAL+QL K KEALDFA AAQ ++PS++ +  K
Sbjct: 419 NDAHMAVRDCHNARRIDASSFKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIVAK 478

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VE+IK+ + AA  EKN +   G       T RVLSLSDI+YRSEANSD+S D  RSERED
Sbjct: 479 VESIKRDLQAAGAEKNEETGAG-------TTRVLSLSDILYRSEANSDSSHDMSRSERED 531

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSA--RETVDANGSSGSPSS 598
           SDYDEE+E+D  TS+  DEGRD ++N + GSLN+RIHR GD      TVD N SSG+ +S
Sbjct: 532 SDYDEELELDIQTSLSDDEGRDTDSNSMRGSLNLRIHRVGDDKPMENTVD-NASSGT-AS 589

Query: 599 SSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT 658
           SSQNDR  YQPE  IDMK+RYVGHCNVGTDIKQASFLGQRG+YIASGSDDGRWFIWEKQT
Sbjct: 590 SSQNDRTSYQPEGAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEKQT 649

Query: 659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADV 718
           GRL+K+L+GDE+V+NC+QCHPFD VVATSGIDNTIKIW+P+ASVPSIV+GG+AGP TA+V
Sbjct: 650 GRLMKVLVGDESVLNCIQCHPFDSVVATSGIDNTIKIWSPTASVPSIVAGGSAGPATANV 709

Query: 719 LEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 763
           +E MESNQ+KLSRNRE+ LS EL++RF M EF+EG+  PFEC QS
Sbjct: 710 VEVMESNQQKLSRNRENPLSVELMQRFRMQEFAEGNFHPFECTQS 754

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416416|ref|NP_568242.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana] gi|14532680|gb|AAK64141.1| unknown protein [Arabidopsis thaliana] gi|23297429|gb|AAN12885.1| unknown protein [Arabidopsis thaliana] gi|332004228|gb|AED91611.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana]

 Score = 1125 bits (2910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/767 (71%), Positives = 634/767 (82%), Gaps = 14/767 (1%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M+N  FHDG+I+++L TR  D   +V+  +Q HSSLVRRLSQE+ELEGHQGCVNA++WNS
Sbjct: 1   MDNLSFHDGNIFNLLHTRSQDPSHEVDQRMQFHSSLVRRLSQEQELEGHQGCVNALAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
            GSLLISGSDD  IN+W+YSSRKLLHSI+TGH+AN+FCTKFVPETSDELVVSGAGDAEVR
Sbjct: 61  NGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFN SR SGR  DDNAI PSALYQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+ 
Sbjct: 121 LFNTSRLSGRAEDDNAIIPSALYQCHTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRES 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAG++HQECR++LLDLR GAKR+LADPPKQTLSLKSCDIS+TRPHLLLVGGSDAFA
Sbjct: 181 TSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPL S +KRM PPPCVNYFCPMHLSE GR++LHLTHVTFSPNGEEVLLSYSG
Sbjct: 241 RLYDRRMLPPLASSRKRMPPPPCVNYFCPMHLSERGRTNLHLTHVTFSPNGEEVLLSYSG 300

Query: 301 EHVYLMDVNHA--GGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVAT 358
           EHVYLM+VN+       M+YT GD   + SF+  L+ +E  P +    Q         AT
Sbjct: 301 EHVYLMNVNNGICSTGIMQYTPGDVDNLFSFSNNLHDVESPPQVSTTPQNGFHRSSNAAT 360

Query: 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRK 418
            + KC  LVEIA+ SLEEG   +Y IEA NEVL+ H + I   LRHECLC RAALLLKRK
Sbjct: 361 -VKKCTELVEIAKWSLEEGTDVFYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRK 419

Query: 419 WKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478
           WKNDA MA+RDC+NARRID+SSF+AH YMSEAL+QL K KEALDFA AAQ ++PS++ + 
Sbjct: 420 WKNDAHMAVRDCHNARRIDASSFKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIV 479

Query: 479 EKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSER 538
            KVE+IK+ + AA  EKN +   G       T RVLSLSDI+YRSEANSD+S D  RSER
Sbjct: 480 AKVESIKRDLQAAGAEKNEETGAG-------TTRVLSLSDILYRSEANSDSSHDMSRSER 532

Query: 539 EDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSA--RETVDANGSSGSP 596
           EDSDYDEE+E+D  TS+  DEGRD ++N + GSLN+RIHR GD      TVD N SSG+ 
Sbjct: 533 EDSDYDEELELDIQTSLSDDEGRDTDSNSMRGSLNLRIHRVGDDKPMENTVD-NASSGT- 590

Query: 597 SSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEK 656
           +SSSQNDR  YQPE  IDMK+RYVGHCNVGTDIKQASFLGQRG+YIASGSDDGRWFIWEK
Sbjct: 591 ASSSQNDRTSYQPEGAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEK 650

Query: 657 QTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTA 716
           QTGRL+K+L+GDE+V+NC+QCHPFD VVATSGIDNTIKIW+P+ASVPSIV+GG+AGP TA
Sbjct: 651 QTGRLMKVLVGDESVLNCIQCHPFDSVVATSGIDNTIKIWSPTASVPSIVAGGSAGPATA 710

Query: 717 DVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 763
           +V+E MESNQ+KLSRNRE+ LS EL++RF M EF+EG+  PFEC QS
Sbjct: 711 NVVEVMESNQQKLSRNRENPLSVELMQRFRMQEFAEGNFHPFECTQS 757

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465333|ref|XP_003602948.1| DDB1- and CUL4-associated factor [Medicago truncatula] gi|355491996|gb|AES73199.1| DDB1- and CUL4-associated factor [Medicago truncatula]

 Score = 1124 bits (2906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/767 (71%), Positives = 640/767 (83%), Gaps = 13/767 (1%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M++ PF DG+I+ +LD+R+  +RPDVN SLQ HSSL+RRLSQE+ELEGH GCVNAI+WNS
Sbjct: 1   MDSSPFLDGNIHRILDSRYLHSRPDVNQSLQTHSSLIRRLSQEKELEGHLGCVNAIAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           KGSLL+SGSDDT INVWSY+ +KL+HSI+TGH+AN+FCTKF+PETSDELV SGAGDAEVR
Sbjct: 61  KGSLLVSGSDDTRINVWSYAGQKLVHSIDTGHTANIFCTKFIPETSDELVASGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFN SR SG GL+DN ITPSALYQCHTRRVKKL VE GNP+VVWSASEDGTLRQHDFR+G
Sbjct: 121 LFNRSRVSGNGLNDNPITPSALYQCHTRRVKKL-VENGNPNVVWSASEDGTLRQHDFREG 179

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAGS  QEC N+LLDLR GAKRSL DPPKQ L+LKS DISSTRPHLLLVGGSDAFA
Sbjct: 180 TSCPPAGSPRQECHNVLLDLRNGAKRSLGDPPKQVLALKSFDISSTRPHLLLVGGSDAFA 239

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPL+SC KRM PPPCVNYFCPMHLS+ G  SLHLTHVTFSP+G EVLLSYSG
Sbjct: 240 RLYDRRMLPPLSSCGKRMPPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGSEVLLSYSG 299

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VNHAG   ++Y+ GD SK+M+++P++NGLELQP + +        +  +   L
Sbjct: 300 EHVYLMNVNHAGVNEVQYSSGDVSKLMTYSPSVNGLELQPFVSNVFTNGFHTKKNITAKL 359

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KCR L++  + SL+EG  PYYGIEACNEVL G+   IGP L+ ECLC RAALLLKRKWK
Sbjct: 360 DKCRKLIKYGKKSLDEGA-PYYGIEACNEVLIGYNHIIGPALKQECLCTRAALLLKRKWK 418

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           NDA MAIRDC+ AR+ D S+++   YMSEAL QL K+KEALDFA+A+  L PS S +AE+
Sbjct: 419 NDAHMAIRDCHAARKFDKSAYKPLYYMSEALSQLGKHKEALDFAVASHSLAPSKSEVAER 478

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VEN KK I  AETEKN+K N+G      R GR+LSLSDI+YRSEANSD SQDG RS+R+D
Sbjct: 479 VENAKKDIVLAETEKNSKTNNG------RGGRMLSLSDILYRSEANSDTSQDGQRSDRDD 532

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDA--NGSSGSPSS 598
           SDY+EE+E+DF TSV GDE  D ++N LH SLN+RIHRRGDS RE V+A  +  S S SS
Sbjct: 533 SDYEEEMELDFETSVSGDEEHDSDSNILHRSLNLRIHRRGDS-RENVEASGSDESPSSSS 591

Query: 599 SSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT 658
           SSQN R  YQPE  IDMKQR++GHCNVGTDIKQA+FLGQ+G+Y+ASGSDDGRWFIWEK+T
Sbjct: 592 SSQNGRASYQPEAAIDMKQRFIGHCNVGTDIKQANFLGQKGEYVASGSDDGRWFIWEKRT 651

Query: 659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADV 718
           GRL+K+L GDE+VVNCVQCHPFD VVATSGIDNTIKIWTPSA V S V+GG+AGP+T DV
Sbjct: 652 GRLMKLLSGDESVVNCVQCHPFDFVVATSGIDNTIKIWTPSAPVASSVAGGSAGPETGDV 711

Query: 719 LEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGS--LRPFECAQS 763
           L AME+NQ+KLSRNR+  L +ELLE F MHEF EGS  LRPFECAQ+
Sbjct: 712 LGAMENNQQKLSRNRDSMLPFELLEPFRMHEFPEGSLRLRPFECAQT 758

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515704|ref|XP_003526538.1| PREDICTED: WD and tetratricopeptide repeats protein 1-like [Glycine max]

 Score = 1115 bits (2885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/766 (71%), Positives = 643/766 (83%), Gaps = 7/766 (0%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M++ PF DG+I+ +LD+R+  +  DVNHSL  HSSL+RRLSQERELEGH GCVNA++WNS
Sbjct: 1   MDSVPFRDGNIHTILDSRYLHSPLDVNHSLHTHSSLIRRLSQERELEGHTGCVNAVAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           KGSLLISGSDD  IN+WSYS  KLLHSI+TGH+AN+FCTKF+PETSDELV SGAGDAEVR
Sbjct: 61  KGSLLISGSDDQRINIWSYSGWKLLHSIDTGHTANIFCTKFIPETSDELVASGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAI-TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179
           LFNLSR +G G  DNAI  PSA YQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+
Sbjct: 121 LFNLSRLNGSGFSDNAIIAPSAYYQCHTRRVKKLAVENGNPNVVWSASEDGTLRQHDFRE 180

Query: 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239
           G+SCPPAGSSHQECRNILLDLR G+KRSLADPPKQ L+LKSCDISST+PHLLLVGGSDAF
Sbjct: 181 GTSCPPAGSSHQECRNILLDLRSGSKRSLADPPKQVLALKSCDISSTKPHLLLVGGSDAF 240

Query: 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299
           ARLYDRRMLPPL+SCQKRMSPPPCVNYFCPMHLS+ G  SLHLTHVTFSP+G EVLLSYS
Sbjct: 241 ARLYDRRMLPPLSSCQKRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYS 300

Query: 300 GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATG 359
           GEHVYLM+VNHAG + M+YT GD SK+M+++PT+NG E+QP + +       ++  +A  
Sbjct: 301 GEHVYLMNVNHAGVKEMQYTSGDESKLMTYSPTINGSEMQPCVSNVFPNRFPIKKNIAAK 360

Query: 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKW 419
           L KCR  ++ A+ SL+ G  PYYGI+ACNEVL G+   IGP L+HECLC RAALL+KRKW
Sbjct: 361 LDKCRKQIKYAKKSLDNGI-PYYGIDACNEVLNGYSHIIGPALKHECLCTRAALLVKRKW 419

Query: 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479
           KNDA MAIRDCY AR ID+SS++A  YMSEAL QL ++++AL+FA+A+  L PS S +AE
Sbjct: 420 KNDAHMAIRDCYAARIIDNSSYKALYYMSEALSQLGRHEDALEFAVASHSLAPSKSEVAE 479

Query: 480 KVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERE 539
           +V N+K+ IA AE EKN++ NDG +R + R GR+LSLSDI+Y  E+NSD   DG RSER+
Sbjct: 480 RVANVKRDIALAEAEKNSQTNDGASRFDSRGGRILSLSDILYCPESNSDDPHDGSRSERD 539

Query: 540 DSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSS 599
           DSDYD+E+E+DF TS+ GDEG D+E+N LHG+LN+RIH RGDS R+  DA+GS  SPSSS
Sbjct: 540 DSDYDDELELDFETSISGDEGHDLESNILHGNLNLRIHGRGDS-RDNADASGSCESPSSS 598

Query: 600 SQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTG 659
           SQN R  YQPE  +DMKQR+VGHCN+GTDIKQASFLGQRG+Y+ASGSDDGRWFIWEK TG
Sbjct: 599 SQNSRTSYQPEPAVDMKQRFVGHCNIGTDIKQASFLGQRGEYVASGSDDGRWFIWEKCTG 658

Query: 660 RLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVL 719
           RLIKML GDE+VVNCVQCHPFD VVATSGID+TIKIWTP+A VPS V+GG+AGP+T DVL
Sbjct: 659 RLIKMLSGDESVVNCVQCHPFDFVVATSGIDSTIKIWTPTAPVPSSVAGGSAGPETGDVL 718

Query: 720 EAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLR--PFECAQS 763
            AMESNQ+KLSR+  H+    LLE F   +F EGSLR  PFECAQS
Sbjct: 719 VAMESNQQKLSRS--HNSILPLLESFRRQDFPEGSLRLHPFECAQS 762

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508017|ref|XP_003522759.1| PREDICTED: WD and tetratricopeptide repeats protein 1-like [Glycine max]

 Score = 1110 bits (2872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/766 (71%), Positives = 638/766 (83%), Gaps = 7/766 (0%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M++ PF DGSI+ +LD+R+  +  DV+HSL  HSSL+RRLSQE ELEGH GCVNA++WNS
Sbjct: 1   MDSVPFRDGSIHTILDSRYFHSPLDVSHSLHTHSSLIRRLSQETELEGHTGCVNAVAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           KGS+LISGSDD  IN+WSYS  KLLHSI+TGH+AN+FCTKF+PETSDELV SGAGDA VR
Sbjct: 61  KGSILISGSDDLRINIWSYSGWKLLHSIDTGHTANIFCTKFIPETSDELVASGAGDAGVR 120

Query: 121 LFNLSRFSGRGLDDNAI-TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179
           LFNLSR SG G  DNAI  PSA YQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+
Sbjct: 121 LFNLSRLSGSGFSDNAIIAPSAHYQCHTRRVKKLAVENGNPNVVWSASEDGTLRQHDFRE 180

Query: 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239
           G+SCPPAGSSHQECRNILLDLR G+KRSLADPPKQ L+LKSCDISSTRPHLLLVGGSDAF
Sbjct: 181 GTSCPPAGSSHQECRNILLDLRSGSKRSLADPPKQVLALKSCDISSTRPHLLLVGGSDAF 240

Query: 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299
           ARLYDRRMLPPL+SC KRMSPPPCVNYFCPMHLS+HG  SLHLTHVTFSP+G EVLLSYS
Sbjct: 241 ARLYDRRMLPPLSSCWKRMSPPPCVNYFCPMHLSDHGHPSLHLTHVTFSPDGHEVLLSYS 300

Query: 300 GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATG 359
           GEHVYLM+VNHAG   M+YT GD SK+M+++PT+NG E+QP + +       ++  +A  
Sbjct: 301 GEHVYLMNVNHAGVNEMQYTSGDNSKLMTYSPTINGTEMQPCVSNVFPNGFPIKKNIAAK 360

Query: 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKW 419
           L KCR L++ A+ SL+ G  PYYGI+ACNEVL G+   IGP L+HECLC RAALL+KRKW
Sbjct: 361 LDKCRKLIKYAKKSLDNGT-PYYGIDACNEVLNGYSHIIGPALKHECLCTRAALLVKRKW 419

Query: 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479
           KNDA M IRDCY AR ID+SS++A  YMSEAL QL ++++AL+FA+A+  L PS S +AE
Sbjct: 420 KNDAHMVIRDCYAAREIDNSSYKALYYMSEALSQLGRHEDALEFAVASHSLAPSKSEVAE 479

Query: 480 KVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERE 539
           +V N+K+ IA AE EK++K NDG +R + R GR+LSLSDI+YR  +N D  QDG R ER+
Sbjct: 480 RVANVKRDIALAEAEKSSKTNDGASRFDSRGGRILSLSDILYRPGSNGDPPQDGSRLERD 539

Query: 540 DSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSS 599
           DSDYDEE+E+DF TS+ GDE  D+E+N LHGSLN+RIHRRGDS R+   A+GS  SPSSS
Sbjct: 540 DSDYDEELELDFETSISGDEEHDLESNILHGSLNLRIHRRGDS-RDNARASGSCESPSSS 598

Query: 600 SQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTG 659
           SQN R  YQPE  +DMKQR+VGHCN+GTDIKQASFLGQRG+Y+ASGSDDGRW+IWEK+TG
Sbjct: 599 SQNSRTSYQPEPAVDMKQRFVGHCNIGTDIKQASFLGQRGEYVASGSDDGRWYIWEKRTG 658

Query: 660 RLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVL 719
           RLIKML GDE+VVNCVQCHPFD VVATSGID+TIKIWTP+A VPS V+GG+AGP+T DVL
Sbjct: 659 RLIKMLNGDESVVNCVQCHPFDFVVATSGIDSTIKIWTPNAPVPSSVAGGSAGPETGDVL 718

Query: 720 EAMESNQRKLSRNREHSLSYELLERFHMHEFSEGS--LRPFECAQS 763
            AMESNQ+KLSR+    L +  LE F M EF EG   LRPFECAQS
Sbjct: 719 VAMESNQQKLSRSHNSILPF--LEPFRMQEFPEGPLRLRPFECAQS 762

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	763
TAIR|locus:2183735	757	ASG2 "AT5G10940" [Arabidopsis	0.986	0.994	0.680	1.5e-280
UNIPROTKB|Q8N5D0	677	WDTC1 "WD and tetratricopeptid	0.542	0.611	0.298	1.3e-64
UNIPROTKB|E2RA21	679	WDTC1 "Uncharacterized protein	0.542	0.609	0.298	1.4e-64
MGI|MGI:2685541	677	Wdtc1 "WD and tetratricopeptid	0.327	0.369	0.344	1.9e-64
UNIPROTKB|B6CVL4	678	WDTC1 "Uncharacterized protein	0.542	0.610	0.298	2.2e-64
RGD|1310362	676	Wdtc1 "WD and tetratricopeptid	0.327	0.369	0.341	4.3e-64
UNIPROTKB|E1C4X5	671	WDTC1 "Uncharacterized protein	0.335	0.381	0.327	1e-62
FB|FBgn0000057	628	adp "adipose" [Drosophila mela	0.148	0.179	0.508	1.7e-57
POMBASE|SPBC609.03	809	iqw1 "WD repeat protein, Iqw1"	0.401	0.378	0.307	3.4e-49
UNIPROTKB|F1NU19	825	F1NU19 "Uncharacterized protei	0.234	0.216	0.338	8.4e-46

TAIR|locus:2183735 ASG2 "AT5G10940" [Arabidopsis thaliana (taxid:3702)]

 Score = 2696 (954.1 bits), Expect = 1.5e-280, P = 1.5e-280
 Identities = 522/767 (68%), Positives = 603/767 (78%)

Query:     1 MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
             M+N  FHDG+I+++L TR  D   +V+  +Q HSSLVRRLSQE+ELEGHQGCVNA++WNS
Sbjct:     1 MDNLSFHDGNIFNLLHTRSQDPSHEVDQRMQFHSSLVRRLSQEQELEGHQGCVNALAWNS 60

Query:    61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
              GSLLISGSDD  IN+W+YSSRKLLHSI+TGH+AN+FCTKFVPETSDELVVSGAGDAEVR
Sbjct:    61 NGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVR 120

Query:   121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
             LFN SR SGR  DDNAI PSALYQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+ 
Sbjct:   121 LFNTSRLSGRAEDDNAIIPSALYQCHTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRES 180

Query:   181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
             +SCPPAG++HQECR++LLDLR GAKR+LADPPKQTLSLKSCDIS+TRPHLLLVGGSDAFA
Sbjct:   181 TSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA 240

Query:   241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
             RLYDRRMLPPL S +KRM PPPCVNYFCPMHLSE GR++LHLTHVTFSPNGEEVLLSYSG
Sbjct:   241 RLYDRRMLPPLASSRKRMPPPPCVNYFCPMHLSERGRTNLHLTHVTFSPNGEEVLLSYSG 300

Query:   301 EHVYLMDVNHA--GGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVAT 358
             EHVYLM+VN+       M+YT GD   + SF+  L+ +E  P +    Q         AT
Sbjct:   301 EHVYLMNVNNGICSTGIMQYTPGDVDNLFSFSNNLHDVESPPQVSTTPQNGFHRSSNAAT 360

Query:   359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRK 418
              + KC  LVEIA+ SLEEG   +Y IEA NEVL+ H + I   LRHECLC RAALLLKRK
Sbjct:   361 -VKKCTELVEIAKWSLEEGTDVFYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRK 419

Query:   419 WKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478
             WKNDA MA+RDC+NARRID+SSF+AH YMSEAL+QL K KEALDFA AAQ ++PS++ + 
Sbjct:   420 WKNDAHMAVRDCHNARRIDASSFKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIV 479

Query:   479 EKVENIKKHIXXXXXXXXXXXXDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPXXXX 538
              KVE+IK+ +             G       T RVLSLSDI+YRSEANSD+S D      
Sbjct:   480 AKVESIKRDLQAAGAEKNEETGAG-------TTRVLSLSDILYRSEANSDSSHDMSRSER 532

Query:   539 XXXXXXXXXXXXFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSA--RETVDANXXXXXX 596
                           TS+  DEGRD ++N + GSLN+RIHR GD      TVD        
Sbjct:   533 EDSDYDEELELDIQTSLSDDEGRDTDSNSMRGSLNLRIHRVGDDKPMENTVD--NASSGT 590

Query:   597 XXXXQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEK 656
                 QNDR  YQPE  IDMK+RYVGHCNVGTDIKQASFLGQRG+YIASGSDDGRWFIWEK
Sbjct:   591 ASSSQNDRTSYQPEGAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEK 650

Query:   657 QTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTA 716
             QTGRL+K+L+GDE+V+NC+QCHPFD VVATSGIDNTIKIW+P+ASVPSIV+GG+AGP TA
Sbjct:   651 QTGRLMKVLVGDESVLNCIQCHPFDSVVATSGIDNTIKIWSPTASVPSIVAGGSAGPATA 710

Query:   717 DVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 763
             +V+E MESNQ+KLSRNRE+ LS EL++RF M EF+EG+  PFEC QS
Sbjct:   711 NVVEVMESNQQKLSRNRENPLSVELMQRFRMQEFAEGNFHPFECTQS 757

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

UNIPROTKB|Q8N5D0 WDTC1 "WD and tetratricopeptide repeats protein 1" [Homo sapiens (taxid:9606)]

 Score = 427 (155.4 bits), Expect = 1.3e-64, Sum P(2) = 1.3e-64
 Identities = 140/469 (29%), Positives = 210/469 (44%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGA---KRSLADP 211
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGQLVEAKCLTVN 193

Query:   212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 267
             P+    L    + ++ P + L             +  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   268 C----PMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG 321
                  P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +   +   YT  
Sbjct:   251 VAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY---KQRPYTFL 307

Query:   322 DASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE---VATGLGKCRMLVEIARNSLEEGK 378
                K  S     NG      + + +   + +      +    G     VE+    LE  K
Sbjct:   308 LPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESRGHVSPQVELPPY-LERVK 366

Query:   379 HPYYGIEACNEVLEG-HL-SGIGPMLRHECLCI--RAALLLKRKWKNDAQMAIRDCYNAR 434
                    AC +  +   L S       H  +    RAA  +KRKW  D   A+RDC  A 
Sbjct:   367 QQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAI 426

Query:   435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 483
              ++    +AH  ++  L +L KY      A A +CLD       E+  +
Sbjct:   427 SLNPCHLKAHFRLARCLFEL-KY-----VAEALECLDDFKGKFPEQAHS 469

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0055082 "cellular chemical homeostasis" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E2RA21 WDTC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 427 (155.4 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
 Identities = 140/469 (29%), Positives = 210/469 (44%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGA---KRSLADP 211
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGQLVEAKCLTVN 193

Query:   212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 267
             P+    L    + ++ P + L             +  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   268 C----PMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG 321
                  P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +   +   YT  
Sbjct:   251 VAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY---KQRPYTFL 307

Query:   322 DASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE---VATGLGKCRMLVEIARNSLEEGK 378
                K  S     NG      + + +   + +      +    G     VE+    LE  K
Sbjct:   308 LPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPENRGHVSPQVELPPY-LERVK 366

Query:   379 HPYYGIEACNEVLEG-HL-SGIGPMLRHECLCI--RAALLLKRKWKNDAQMAIRDCYNAR 434
                    AC +  +   L S       H  +    RAA  +KRKW  D   A+RDC  A 
Sbjct:   367 QQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAI 426

Query:   435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 483
              ++    +AH  ++  L +L KY      A A +CLD       E+  +
Sbjct:   427 SLNPCHLKAHFRLARCLFEL-KY-----VAEALECLDDFKGKFPEQAHS 469

GO:0055082 "cellular chemical homeostasis" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

MGI|MGI:2685541 Wdtc1 "WD and tetratricopeptide repeats 1" [Mus musculus (taxid:10090)]

 Score = 375 (137.1 bits), Expect = 1.9e-64, Sum P(3) = 1.9e-64
 Identities = 100/290 (34%), Positives = 148/290 (51%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAK---RSLADP 211
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGPMVEAKCLTVN 193

Query:   212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 267
             P+    L    + ++ P + L             R  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMRQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   268 C----PMHLSEHGRSSLHL---THVTFSPNGEEVLLSYSGEHVYLMDVNH 310
                  P+ L ++  S L +   T+VTFSPNG E+L++  GE VYL D+ +
Sbjct:   251 VAGHLPVKLPDYN-SRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY 299

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0004857 "enzyme inhibitor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006006 "glucose metabolic process" evidence=IMP

GO:0008361 "regulation of cell size" evidence=IMP

GO:0032869 "cellular response to insulin stimulus" evidence=IMP

GO:0035264 "multicellular organism growth" evidence=IMP

GO:0042393 "histone binding" evidence=IPI

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0043086 "negative regulation of catalytic activity" evidence=IDA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IMP;IDA

GO:0055082 "cellular chemical homeostasis" evidence=IMP

UNIPROTKB|B6CVL4 WDTC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 427 (155.4 bits), Expect = 2.2e-64, Sum P(2) = 2.2e-64
 Identities = 140/469 (29%), Positives = 210/469 (44%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGA---KRSLADP 211
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGQLVEAKCLTVN 193

Query:   212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 267
             P+    L    + ++ P + L             +  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   268 C----PMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG 321
                  P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +   +   YT  
Sbjct:   251 VAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY---KQRPYTFL 307

Query:   322 DASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE---VATGLGKCRMLVEIARNSLEEGK 378
                K  S     NG      + + +   + +      +    G     VE+    LE  K
Sbjct:   308 LPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESRGHVSPQVELPPY-LERVK 366

Query:   379 HPYYGIEACNEVLEG-HL-SGIGPMLRHECLCI--RAALLLKRKWKNDAQMAIRDCYNAR 434
                    AC +  +   L S       H  +    RAA  +KRKW  D   A+RDC  A 
Sbjct:   367 QQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAI 426

Query:   435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 483
              ++    +AH  ++  L +L KY      A A +CLD       E+  +
Sbjct:   427 SLNPCHLKAHFRLARCLFEL-KY-----VAEALECLDDFKGKFPEQAHS 469

GO:0055082 "cellular chemical homeostasis" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

RGD|1310362 Wdtc1 "WD and tetratricopeptide repeats 1" [Rattus norvegicus (taxid:10116)]

 Score = 372 (136.0 bits), Expect = 4.3e-64, Sum P(3) = 4.3e-64
 Identities = 99/290 (34%), Positives = 148/290 (51%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAK---RSLADP 211
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGPMVEAKCLTVN 193

Query:   212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 267
             P+    L    + ++ P + L             +  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   268 C----PMHLSEHGRSSLHL---THVTFSPNGEEVLLSYSGEHVYLMDVNH 310
                  P+ L ++  S L +   T+VTFSPNG E+L++  GE VYL D+ +
Sbjct:   251 VAGHLPVKLPDYN-SRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY 299

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0004857 "enzyme inhibitor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006006 "glucose metabolic process" evidence=IEA;ISO

GO:0008361 "regulation of cell size" evidence=IEA;ISO

GO:0032869 "cellular response to insulin stimulus" evidence=IEA;ISO

GO:0035264 "multicellular organism growth" evidence=IEA;ISO

GO:0042393 "histone binding" evidence=IEA;ISO

GO:0042826 "histone deacetylase binding" evidence=IEA;ISO

GO:0043086 "negative regulation of catalytic activity" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA;ISO

GO:0055082 "cellular chemical homeostasis" evidence=IEA;ISO

UNIPROTKB|E1C4X5 WDTC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 363 (132.8 bits), Expect = 1.0e-62, Sum P(3) = 1.0e-62
 Identities = 93/284 (32%), Positives = 143/284 (50%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P + D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHSGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216
                P+  WSA+EDG +RQ+D R+ S          E    L++ +C     L   P+   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSKRSEVLIDLTEYCGQLVEAKC-----LTVNPQDNN 198

Query:   217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYFC---- 268
              L    + ++ P + L             +  P     T C ++   P     Y+     
Sbjct:   199 YLA---VGASGPFVRLYDIRMIHNHRKSMKQCPSAGVHTFCDRQKPLPDGAAQYYVAGHL 255

Query:   269 PMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310
             P+ L ++      L  T+VTFSP+G E+L++  GE VYL D+ +
Sbjct:   256 PVKLPDYNNRLRVLVATYVTFSPDGTELLVNMGGEQVYLFDLTY 299

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0055082 "cellular chemical homeostasis" evidence=IEA

FB|FBgn0000057 adp "adipose" [Drosophila melanogaster (taxid:7227)]

 Score = 312 (114.9 bits), Expect = 1.7e-57, Sum P(3) = 1.7e-57
 Identities = 61/120 (50%), Positives = 81/120 (67%)

Query:   611 TVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEA 670
             T  D  QRYVGHCNV TDIK+A++LG +G++IA+GSDDG  +IWE  TG++  +   D A
Sbjct:   498 TARDYMQRYVGHCNVTTDIKEANYLGSQGEFIAAGSDDGNMYIWEGDTGKIRAVYRADSA 557

Query:   671 VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPD-TADVLEAMESNQRKL 729
             +VNCVQ HP  C++ATSGID+ IKIW+P A+           P+  ADV   +E NQ K+
Sbjct:   558 IVNCVQPHPSICMLATSGIDHNIKIWSPCAA------SAEERPNLVADVTRFVEDNQEKM 611

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=IMP;TAS

GO:0009269 "response to desiccation" evidence=IMP

GO:0010891 "negative regulation of sequestering of triglyceride" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0010883 "regulation of lipid storage" evidence=IMP

POMBASE|SPBC609.03 iqw1 "WD repeat protein, Iqw1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 375 (137.1 bits), Expect = 3.4e-49, Sum P(2) = 3.4e-49
 Identities = 103/335 (30%), Positives = 169/335 (50%)

Query:    15 LDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHI 74
             LD R    R  ++  +  +S+ +  +  ++EL GH GCVN + W++ G  L+SGSDDT +
Sbjct:    11 LDYRDWFQRK-ISRDIYGNSTWLTGIDLQKELTGHTGCVNTLDWSADGEFLLSGSDDTRL 69

Query:    75 NVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133
              VW  ++  K  H I TGH  N+F  KFVP +++  ++S +GD  ++LF+L      G+D
Sbjct:    70 IVWDVFNEYKPRHLISTGHVQNIFSAKFVPYSNNRQILSASGDKLIKLFDLDSSKEGGMD 129

Query:   134 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193
                 T +  + C    VK + V   N H     SEDGT RQ+D R+   C    +   +C
Sbjct:   130 HGMETQTRCWSCALDSVKNI-VPCDNGHTFLVCSEDGTARQYDIREPHVC----NQDLDC 184

Query:   194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253
              +IL++          +P +  ++L +  +S + P+   +GG+  +A LYDRRM+     
Sbjct:   185 PSILVNY---------NPYR--INLYTITMSPSNPYYFAIGGTHPYAFLYDRRMVKKSFR 233

Query:   254 CQKRMSPPP-----CVNYFCPM-HLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLM 306
                 M+  P     CV  F P    +  G    ++T   FS  N  E+L+S++ ++VYL 
Sbjct:   234 DDWTMNTSPEKDCRCVRKFSPDGSCNSQGILDRYITCCQFSAANPNELLVSWNSDYVYLF 293

Query:   307 DVNHAGGRAMRYT-VGDASKIMSFTPTLNGLELQP 340
              V+        +  + D++K  S  P+L  L+ QP
Sbjct:   294 HVHEDKSYTPTFNKIEDSNKKPS-KPSL--LQTQP 325

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0043234 "protein complex" evidence=NAS

UNIPROTKB|F1NU19 F1NU19 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 8.4e-46, Sum P(3) = 8.4e-46
 Identities = 65/192 (33%), Positives = 98/192 (51%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             ++RL  E  L  H GCVN I WN  G  ++SGSDDT++ + +  SRK+L +I +GH AN+
Sbjct:     5 IQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTNLVITNPYSRKVLTTIRSGHRANI 64

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P T+D+ +VS +GD  +   N+ +       D        Y CH     ++   
Sbjct:    65 FSAKFLPCTNDKQIVSCSGDGVIFYTNVEQ-------DAETNRQCQYTCHYGTTYEIMTV 117

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN-ILLDLRCGAKRSLADPPKQT 215
               +P+   S  EDGT+R  D R  +SC     + ++C++ IL++ R  A      PP   
Sbjct:   118 PNDPYTFLSCGEDGTVRWFDTRIKTSC-----TKEDCKDDILINCRRAATSVAICPPIPY 172

Query:   216 LSLKSCDISSTR 227
                  C  SS R
Sbjct:   173 YLAVGCSDSSVR 184

GO:0005634 "nucleus" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.V.4660.1 hypothetical protein (756 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	763
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-07
smart00320	40	smart00320, WD40, WD40 repeats	9e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-06
smart00320	40	smart00320, WD40, WD40 repeats	3e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.004
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.004
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.004
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 48/219 (21%)

Query: 41  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
              R L+GH G V  ++ ++ G+ L SGS D  I +W   + + + ++ TGH++ V    
Sbjct: 42  ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVA 100

Query: 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160
           F P     ++ S + D  ++++++                   + HT  V  +A      
Sbjct: 101 FSP--DGRILSSSSRDKTIKVWDVETG----------KCLTTLRGHTDWVNSVAFSPDGT 148

Query: 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220
            V  S+S+DGT++  D R G                                  TL+  +
Sbjct: 149 FVA-SSSQDGTIKLWDLRTGK------------------------------CVATLTGHT 177

Query: 221 CDISSTRPH----LLLVGGSDAFARLYDRRMLPPLTSCQ 255
            +++S         LL   SD   +L+D      L + +
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.4 bits (186), Expect = 8e-15
 Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 14/130 (10%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
             L GH G VN+++++  G  L+S S D  I +W  S+ K L ++  GH   V    F P
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL-RGHENGVNSVAFSP 229

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
                L+ SG+ D  +R+++L                     HT  V  LA       + 
Sbjct: 230 --DGYLLASGSEDGTIRVWDLRTGE----------CVQTLSGHTNSVTSLAWSPDGKRLA 277

Query: 164 WSASEDGTLR 173
            S S DGT+R
Sbjct: 278 -SGSADGTIR 286

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 72.4 bits (178), Expect = 9e-14
 Identities = 55/258 (21%), Positives = 91/258 (35%), Gaps = 69/258 (26%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
           R L+GH G V  ++++  G LL +GS D  I VW   + +LL ++  GH+  V       
Sbjct: 3   RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASA 61

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
                 + SG+ D  +RL++L   +G  +             HT  V  +A    +  ++
Sbjct: 62  --DGTYLASGSSDKTIRLWDLE--TGECVRT--------LTGHTSYVSSVAF-SPDGRIL 108

Query: 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223
            S+S D T++  D   G                                  TL   +  +
Sbjct: 109 SSSSRDKTIKVWDVETGK------------------------------CLTTLRGHTDWV 138

Query: 224 SSTRPH----LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279
           +S         +     D   +L+D             +    CV      H  E     
Sbjct: 139 NSVAFSPDGTFVASSSQDGTIKLWD-------------LRTGKCV-ATLTGHTGE----- 179

Query: 280 LHLTHVTFSPNGEEVLLS 297
             +  V FSP+GE++L S
Sbjct: 180 --VNSVAFSPDGEKLLSS 195

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 14/140 (10%)

Query: 42  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
               L GH   VN+++++  G+ + S S D  I +W   + K + ++ TGH+  V    F
Sbjct: 127 CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAF 185

Query: 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 161
            P    E ++S + D  ++L++LS                  + H   V  +A       
Sbjct: 186 SP--DGEKLLSSSSDGTIKLWDLSTGK----------CLGTLRGHENGVNSVAFSPDGYL 233

Query: 162 VVWSASEDGTLRQHDFRQGS 181
           +  S SEDGT+R  D R G 
Sbjct: 234 LA-SGSEDGTIRVWDLRTGE 252

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 46  LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105
           L GH+  VN+++++  G LL SGS+D  I VW   + + + ++ +GH+ +V    + P+ 
Sbjct: 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL-SGHTNSVTSLAWSPDG 273

Query: 106 SDELVVSGAGDAEVRLFN 123
               + SG+ D  +R+++
Sbjct: 274 KR--LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.4 bits (150), Expect = 4e-10
 Identities = 70/319 (21%), Positives = 110/319 (34%), Gaps = 60/319 (18%)

Query: 42  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSRKLLHSIETGHSANVFCTK 100
               L GH+  + +I+++  G LL+SGS D  I +W   +  KL+ S+E  H ++V    
Sbjct: 57  SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 101 F-VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
              P+ +  L+ S + D  V+L++LS                  + H+  V  LA     
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLS---------TPGKLIRTLEGHSESVTSLAFSPDG 167

Query: 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219
             +   +S DGT++  D R G                          +LA       SL 
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPL----------------------STLAGHTDPVSSL- 204

Query: 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM--------- 270
               S     L+  G SD   RL+D      L S     S    V+ F P          
Sbjct: 205 --AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS-DSVVSSFSPDGSLLASGSS 261

Query: 271 --------------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 316
                          L      S  +  V FSP+G+ +    S   V L D+      + 
Sbjct: 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321

Query: 317 RYTVGDASKIMSFTPTLNG 335
               G    + S + + +G
Sbjct: 322 LTLKGHEGPVSSLSFSPDG 340

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 614 DMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVN 673
           ++ +   GH     D+  ++     G Y+ASGS D    +W+ +TG  ++ L G  + V+
Sbjct: 42  ELLRTLKGHTGPVRDVAASAD----GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97

Query: 674 CVQCHPFDCVVATSGIDNTIKIW 696
            V   P   ++++S  D TIK+W
Sbjct: 98  SVAFSPDGRILSSSSRDKTIKVW 120

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           +   GH +    +   +F    G  ++S S D    +W+ +TG+ +  L G    VN V 
Sbjct: 87  RTLTGHTS---YVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142

Query: 677 CHPFDCVVATSGIDNTIKIW 696
             P    VA+S  D TIK+W
Sbjct: 143 FSPDGTFVASSSQDGTIKLW 162

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.0 bits (138), Expect = 9e-09
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           G  +A+GS DG   +W+ +TG L++ L G    V  V        +A+   D TI++W
Sbjct: 21  GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 13/139 (9%)

Query: 45  ELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
            L GH    V++ S +  GSLL SGS D  I +W   S   L    +GHS++V    F P
Sbjct: 237 TLSGHSDSVVSSFSPD--GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
               +L+ SG+ D  VRL++L            +  S   + H   V  L+       +V
Sbjct: 295 --DGKLLASGSSDGTVRLWDLE--------TGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344

Query: 164 WSASEDGTLRQHDFRQGSS 182
              S+DGT+R  D R G  
Sbjct: 345 SGGSDDGTIRLWDLRTGKP 363

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 44/157 (28%), Positives = 62/157 (39%), Gaps = 14/157 (8%)

Query: 41  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCT 99
           S  R L GH   V +++++  G LL SGS D  + +W   + KLL S+   GH   V   
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334

Query: 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
            F P+ S  LV  G+ D  +RL++L             T   L                +
Sbjct: 335 SFSPDGSL-LVSGGSDDGTIRLWDLR------------TGKPLKTLEGHSNVLSVSFSPD 381

Query: 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196
             VV S S DGT+R  D   GS             ++
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSL 418

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 67/292 (22%), Positives = 101/292 (34%), Gaps = 58/292 (19%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           R LEGH   V +++++  G LL SGS  D  I +W   + K L ++  GH+  V    F 
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFS 207

Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+    L+ SG+ D  +RL++LS               +    H+  V       G+   
Sbjct: 208 PD-GGLLIASGSSDGTIRLWDLS---------TGKLLRSTLSGHSDSVVSSFSPDGSLLA 257

Query: 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 222
             S S DGT+R  D R  SS     S H                          S+ S  
Sbjct: 258 --SGSSDGTIRLWDLRSSSSLLRTLSGHSS------------------------SVLSVA 291

Query: 223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282
            S     LL  G SD   RL+D                         + L  H      +
Sbjct: 292 FSPD-GKLLASGSSDGTVRLWDLETGKL----------------LSSLTLKGHEGP---V 331

Query: 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334
           + ++FSP+G  ++   S +    +     G              +SF+P   
Sbjct: 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGR 383

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 628 DIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATS 687
            +   +F    G ++AS S DG   +W+ +TG+ +  L G    VN V   P    + +S
Sbjct: 137 WVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSS 195

Query: 688 GIDNTIKIWTPSA 700
             D TIK+W  S 
Sbjct: 196 SSDGTIKLWDLST 208

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           G  +ASGS+DG   +W+ +TG  ++ L G    V  +   P    +A+   D TI+IW
Sbjct: 231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78
             R L+GH G V +++++  G+LL SGSDD  + VW 
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 37  VRRLSQERELEGHQGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSAN 95
           +R       L GH   V++++++  G LLI SGS D  I +W  S+ KLL S  +GHS +
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           V  + F P     L+ SG+ D  +RL++L   S         +       H+  V  +A 
Sbjct: 245 V-VSSFSP--DGSLLASGSSDGTIRLWDLRSSS---------SLLRTLSGHSSSVLSVAF 292

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSS 182
              +  ++ S S DGT+R  D   G  
Sbjct: 293 S-PDGKLLASGSSDGTVRLWDLETGKL 318

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78
             + L+GH G V +++++  G  L SGSDD  I +W 
Sbjct: 3  ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 44/137 (32%), Positives = 64/137 (46%), Gaps = 16/137 (11%)

Query: 38  RRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
            +L     L+GH+G V+++S++  GS L+  GSDD  I +W   + K L ++E     NV
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS--NV 373

Query: 97  FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
               F P+    +V SG+ D  VRL++LS  S     D           HT RV  L   
Sbjct: 374 LSVSFSPDG--RVVSSGSTDGTVRLWDLSTGSLLRNLD----------GHTSRVTSLDFS 421

Query: 157 VGNPHVVWSASEDGTLR 173
                +  S S D T+R
Sbjct: 422 PDGKSLA-SGSSDNTIR 437

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 658 TGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           +G L+K L G    V  V   P    +A+   D TIK+W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 642 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           + S S DG   +W+  TG+ +  L G E  VN V   P   ++A+   D TI++W
Sbjct: 192 LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 639 GDYIASGSDDGRWFIWE-KQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           G  +ASGS DG   +W+ + +  L++ L G  + V  V   P   ++A+   D T+++W
Sbjct: 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           G+L++ L G    V  V   P   ++A+   D T+++W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.2 bits (100), Expect = 4e-04
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKML--LGDEAVVNCVQCHPFDCVVATSG-IDNTIKI 695
           G  +ASGS DG   +W+ +TG+L+  L   G E  V+ +   P   ++ + G  D TI++
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355

Query: 696 W 696
           W
Sbjct: 356 W 356

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78
           + L GH   V +++W+  G  L SGS D  I +W 
Sbjct: 255 QTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 0.004
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 618 RYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQC 677
              GH      +   SF       ++ GSDDG   +W+ +TG+ +K L G   V   V  
Sbjct: 323 TLKGHEGP---VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSF 378

Query: 678 HPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT 715
            P   VV++   D T+++W  S         G     T
Sbjct: 379 SPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVT 416

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 0.004
 Identities = 21/80 (26%), Positives = 37/80 (46%)

Query: 628 DIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATS 687
            +   +F    G  IASGS DG   +W+  TG+L++  L   +        P   ++A+ 
Sbjct: 200 PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASG 259

Query: 688 GIDNTIKIWTPSASVPSIVS 707
             D TI++W   +S   + +
Sbjct: 260 SSDGTIRLWDLRSSSSLLRT 279

Length = 466

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 405 ECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFA 464
           +     AA   K       + A+ D   A  +D  + +A+  +  A  +L KY+EAL+  
Sbjct: 35  DAYYNLAAAYYK---LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91

Query: 465 IAAQCLDPS 473
             A  LDP+
Sbjct: 92  EKALELDPN 100

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	763
KOG1310	758	consensus WD40 repeat protein [General function pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG1334	559	consensus WD40 repeat protein [General function pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.98
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG4227	609	consensus WD40 repeat protein [General function pr	99.94
PTZ00420	568	coronin; Provisional	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.92
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.92
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.9
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG1274	933	consensus WD40 repeat protein [General function pr	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG2055	514	consensus WD40 repeat protein [General function pr	99.86
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.86
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.84
KOG2048	691	consensus WD40 repeat protein [General function pr	99.84
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.83
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.83
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.83
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG2096	420	consensus WD40 repeat protein [General function pr	99.82
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.81
KOG1274	933	consensus WD40 repeat protein [General function pr	99.81
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
KOG1188	376	consensus WD40 repeat protein [General function pr	99.8
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.8
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.8
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.79
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.78
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.77
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.77
KOG2055	514	consensus WD40 repeat protein [General function pr	99.77
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.76
KOG1273	405	consensus WD40 repeat protein [General function pr	99.75
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.75
KOG0639	705	consensus Transducin-like enhancer of split protei	99.74
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.74
KOG1963	792	consensus WD40 repeat protein [General function pr	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
COG2319	466	FOG: WD40 repeat [General function prediction only	99.74
KOG4328	498	consensus WD40 protein [Function unknown]	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.71
KOG1188	376	consensus WD40 repeat protein [General function pr	99.71
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.71
COG2319	466	FOG: WD40 repeat [General function prediction only	99.71
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.68
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.68
PRK11028	330	6-phosphogluconolactonase; Provisional	99.67
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.67
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.65
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.65
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.64
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.63
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.61
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.61
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.61
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.61
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.61
PRK11028	330	6-phosphogluconolactonase; Provisional	99.6
KOG1310	758	consensus WD40 repeat protein [General function pr	99.57
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.57
PRK01742	429	tolB translocation protein TolB; Provisional	99.56
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.56
KOG0649	325	consensus WD40 repeat protein [General function pr	99.56
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.55
KOG4227	609	consensus WD40 repeat protein [General function pr	99.55
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.54
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.53
PRK01742	429	tolB translocation protein TolB; Provisional	99.52
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.51
KOG1963	792	consensus WD40 repeat protein [General function pr	99.5
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.5
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.49
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.48
KOG0649	325	consensus WD40 repeat protein [General function pr	99.48
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.46
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.45
KOG2321	703	consensus WD40 repeat protein [General function pr	99.45
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.43
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.43
PRK04922	433	tolB translocation protein TolB; Provisional	99.4
PRK03629	429	tolB translocation protein TolB; Provisional	99.38
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.37
PRK05137	435	tolB translocation protein TolB; Provisional	99.37
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.35
KOG2139	445	consensus WD40 repeat protein [General function pr	99.35
PRK03629	429	tolB translocation protein TolB; Provisional	99.34
PRK02889	427	tolB translocation protein TolB; Provisional	99.32
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.32
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.31
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.31
PRK04922	433	tolB translocation protein TolB; Provisional	99.3
PRK02889	427	tolB translocation protein TolB; Provisional	99.24
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.23
KOG2139	445	consensus WD40 repeat protein [General function pr	99.22
KOG1334	559	consensus WD40 repeat protein [General function pr	99.21
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.21
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.21
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.16
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.16
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.15
KOG2321	703	consensus WD40 repeat protein [General function pr	99.14
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.14
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.13
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.11
KOG2315	566	consensus Predicted translation initiation factor	99.11
PRK05137	435	tolB translocation protein TolB; Provisional	99.11
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.11
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.08
PRK04792	448	tolB translocation protein TolB; Provisional	99.08
PRK00178	430	tolB translocation protein TolB; Provisional	99.08
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.06
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.01
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.0
PRK04792	448	tolB translocation protein TolB; Provisional	99.0
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.99
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.99
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.99
PRK00178	430	tolB translocation protein TolB; Provisional	98.96
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.96
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.95
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.95
PRK01029	428	tolB translocation protein TolB; Provisional	98.94
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.94
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.93
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.91
KOG4547	541	consensus WD40 repeat-containing protein [General	98.89
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.87
KOG4547	541	consensus WD40 repeat-containing protein [General	98.87
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.87
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.86
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.83
KOG2314	698	consensus Translation initiation factor 3, subunit	98.79
PRK01029	428	tolB translocation protein TolB; Provisional	98.69
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.68
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.67
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.66
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.65
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.64
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.64
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.64
KOG2315	566	consensus Predicted translation initiation factor	98.63
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.59
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.58
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.58
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.57
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.55
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.54
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.54
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.52
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.52
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.48
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.47
KOG2695	425	consensus WD40 repeat protein [General function pr	98.47
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.45
PRK04043	419	tolB translocation protein TolB; Provisional	98.44
COG4946	668	Uncharacterized protein related to the periplasmic	98.4
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.32
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.3
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.25
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.24
COG4946	668	Uncharacterized protein related to the periplasmic	98.22
KOG2695	425	consensus WD40 repeat protein [General function pr	98.2
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.19
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.18
KOG2314	698	consensus Translation initiation factor 3, subunit	98.18
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.17
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.13
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.11
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.07
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.06
PRK04043	419	tolB translocation protein TolB; Provisional	98.04
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.01
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.99
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.95
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.94
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.92
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.89
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.86
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.79
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.77
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.77
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.72
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.69
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.65
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.62
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.55
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.46
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.45
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.38
KOG3621	726	consensus WD40 repeat-containing protein [General	97.32
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.3
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.3
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.19
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.98
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.96
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.88
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.77
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.73
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.67
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.67
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.65
PRK02888	635	nitrous-oxide reductase; Validated	96.55
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.45
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.43
COG3391	381	Uncharacterized conserved protein [Function unknow	96.43
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.42
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.36
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.26
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.17
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.07
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.04
KOG3621	726	consensus WD40 repeat-containing protein [General	96.04
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.04
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.94
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.93
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.89
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.89
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.86
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.72
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.67
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.63
KOG0553	304	consensus TPR repeat-containing protein [General f	95.35
KOG4234	271	consensus TPR repeat-containing protein [General f	95.3
COG3391	381	Uncharacterized conserved protein [Function unknow	95.29
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.1
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.07
PHA02713	557	hypothetical protein; Provisional	95.05
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.05
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.03
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.89
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.88
KOG2395	644	consensus Protein involved in vacuole import and d	94.88
KOG2444	238	consensus WD40 repeat protein [General function pr	94.76
PRK02888	635	nitrous-oxide reductase; Validated	94.72
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.61
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.34
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.33
KOG2395	644	consensus Protein involved in vacuole import and d	94.25
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.25
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.12
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.03
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.82
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	93.79
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.77
KOG2444	238	consensus WD40 repeat protein [General function pr	93.7
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	93.67
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.63
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.37
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.32
PHA02713	557	hypothetical protein; Provisional	93.17
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.97
PRK13616	591	lipoprotein LpqB; Provisional	92.75
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.39
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	92.36
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.26
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.15
PHA03098	534	kelch-like protein; Provisional	92.08
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.84
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	91.51
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.49
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.03
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.89
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	90.68
PHA02790	480	Kelch-like protein; Provisional	90.65
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	89.74
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	88.84
PHA03098	534	kelch-like protein; Provisional	88.79
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.01
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	87.91
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	87.77
PRK13616	591	lipoprotein LpqB; Provisional	87.76
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	87.43
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	86.97
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	86.79
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	86.78
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	86.59
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	86.3
PRK10115	686	protease 2; Provisional	86.29
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	86.25
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	86.25
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	85.98
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	85.9
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	85.06
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	84.73
KOG2247	615	consensus WD40 repeat-containing protein [General	84.63
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	84.37
KOG4648	536	consensus Uncharacterized conserved protein, conta	84.35
PHA02790	480	Kelch-like protein; Provisional	84.35
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	83.76
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	82.92
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	82.92
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	82.89
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	82.73
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	82.15
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	81.6
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	81.24
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	81.18

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.1e-75  Score=578.47  Aligned_cols=738  Identities=36%  Similarity=0.501  Sum_probs=575.6

Q ss_pred             CCCCCCCCCchhhhhhccccCCCcccccccc-cchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeC
Q 004290            1 MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQ-MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY   79 (763)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~   79 (763)
                      |.++-|+++++.++|..|....... .+++. ..+.+++++.+.++|+||+++|+||+|+.+|.+|+|||.|-.+.|||.
T Consensus         1 M~~vs~s~~~i~rql~~r~~~~~h~-~rq~y~~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~   79 (758)
T KOG1310|consen    1 MSGVSLSDGNILRQLDYRDAFQLHI-SRQIYMGNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDP   79 (758)
T ss_pred             CCceeccchhHhhhccccccchhhh-HHHHhccccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecc
Confidence            7788899999988887776544432 23322 778899999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC
Q 004290           80 SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN  159 (763)
Q Consensus        80 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  159 (763)
                      ...+.++.+..+|...|++++|.|..++.++++|+.|..|+++|+...++...+.+..++...+..|...|..|+..|.+
T Consensus        80 ~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~  159 (758)
T KOG1310|consen   80 FEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG  159 (758)
T ss_pred             hhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC
Confidence            99999999999999999999999998889999999999999999998777777777788889999999999999999988


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCc
Q 004290          160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF  239 (763)
Q Consensus       160 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~  239 (763)
                      ++.|+++++||+|+.+|+|....+......+..+...               ........++.++|.++.+|++|+.|-.
T Consensus       160 PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny---------------~~~lielk~ltisp~rp~~laVGgsdpf  224 (758)
T KOG1310|consen  160 PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY---------------NPQLIELKCLTISPSRPYYLAVGGSDPF  224 (758)
T ss_pred             CceEEEecCCcceeeecccCCccCCccccccHHHHHh---------------chhhheeeeeeecCCCCceEEecCCCch
Confidence            8999999999999999999987664333222222111               1223567899999999999999999999


Q ss_pred             EEEEeCCC-CCCCcccCC----CCCCCCccccccccccc-CCCCCc-c--ceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          240 ARLYDRRM-LPPLTSCQK----RMSPPPCVNYFCPMHLS-EHGRSS-L--HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       240 i~iwd~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~g~~~-~--~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      .++||.|. .+....-..    +..+..|+++|+|.|+. ..|... .  .++.++|+|+|..|++......|++||++.
T Consensus       225 arLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  225 ARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE  304 (758)
T ss_pred             hhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence            99999554 333322222    12233589999999993 333111 1  267889999999999999999999999999


Q ss_pred             CCccceEeec------CCCCeeeeec-c--CCCCcccCCCC-CcccccccccccccccCchhhhHHHHHHHhhhhcCCCh
Q 004290          311 AGGRAMRYTV------GDASKIMSFT-P--TLNGLELQPPI-HDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHP  380 (763)
Q Consensus       311 ~~~~~~~~~~------~~~~~~~~~~-p--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (763)
                      ++.+...+..      +.....+.|. |  ..+.+.+.... ....+......+......++...+.+...+.+.+|...
T Consensus       305 ~~~~~~y~~~~~~~~~~~~~~~~lfT~~~~~sN~lh~~en~~~~~tP~sr~hrsp~~a~~~~~~eL~e~ie~~~~egnd~  384 (758)
T KOG1310|consen  305 DKSPTPYFLPIEDSNKKPSKPSLLFTQPLKRSNYLHWYENNFGASTPASRVHRSPYTAAQPRFYELPENIEKFKTEGNDG  384 (758)
T ss_pred             CCCceeecCcccccccCCCCcchhhccccccccccccccCCccccCCccccccCcccccccchhhchHHHHHHHhhccch
Confidence            7655444333      1111222222 1  01111111111 01111111122233445555666777777777666654


Q ss_pred             hhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHH
Q 004290          381 YYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEA  460 (763)
Q Consensus       381 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  460 (763)
                      ...+...+.+..-....+.-+....++.+|++++++|.|.+|.|+|++||+.++.++|...++|+++.+++..|.+++++
T Consensus       385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea  464 (758)
T KOG1310|consen  385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA  464 (758)
T ss_pred             hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence            44443333333222222233445679999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCCCCCCCC
Q 004290          461 LDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED  540 (763)
Q Consensus       461 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~  540 (763)
                      .++...++..||...-....+..+..++..+...+......       ...+|.++.+.+++.....+.+.+.......+
T Consensus       465 l~~~~alq~~~Ptd~a~~~~v~~l~rDi~aa~~~~~~e~~~-------~~~ri~t~~~~~~r~~~~~~~~~~~~~l~s~d  537 (758)
T KOG1310|consen  465 LSCHWALQMSFPTDVARQNFVLCLPRDISAALFSNPSEMIR-------AFARIDTDLSSVRRFFWIHKVLRGCLLLISSD  537 (758)
T ss_pred             hhhHHHHhhcCchhhhhhhhhhccccchHHHhccCchhhhh-------hhheeccchhhhhhhhhhhhhhhhhhhhhccc
Confidence            99999999999966555667777777887776554443322       34567777777788888888888888899999


Q ss_pred             CCchhhhhccccCCCCCCCCcccccccccCCcceeeeccCCCccccccCCCCCCCCCCCCCCCCCCCCcccccccceEEe
Q 004290          541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYV  620 (763)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (763)
                      +..+.|.|.+...+..+.+.+..+++.-.|+|.++++..+++...+..-..+...-.++..+|...|......++.++|.
T Consensus       538 ~~~e~e~p~d~qts~vds~~R~dd~n~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~ssl~nDe~dyq~E~sydy~~rYv  617 (758)
T KOG1310|consen  538 IYWEQEQPWDSQTSDVDSSQRLDDENGFLTLLEPPVNYENEVESSSGENIVSMYTGHSSLNNDEDDYQDEESYDYASRYV  617 (758)
T ss_pred             ccccccCCCCCCceeccccccccccccccccccCccccccccccccccccccccccccccccchhhcccchhhhHHhhhc
Confidence            99999999999999999999999899999999999988777643333333334444555677888888899999999999


Q ss_pred             eecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCC
Q 004290          621 GHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA  700 (763)
Q Consensus       621 gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~  700 (763)
                      ||||..++|+.++|++..|.|+++||+||+.+||+..+|.++.++.|..+.|+|++-||..++|||+|+|.+||||++..
T Consensus       618 GHCNv~TDIKeanFlGqrgeyiasgSddgr~fiwek~tg~i~av~~gdssivnciqghP~~~~latSgiDstiKIwsp~a  697 (758)
T KOG1310|consen  618 GHCNVTTDIKEANFLGQRGEYIASGSDDGRFFIWEKLTGSILAVIHGDSSIVNCIQGHPRCPTLATSGIDSTIKIWSPEA  697 (758)
T ss_pred             cccccccccccccccccCCCeeeEecCCCceEEeecCCcceEEEeeCchhheeeccCCCCCceeeeccCccceEEecccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCccccCCCCCCChhhHHHHHHHHHHHhhcccccCCcHHHHHHhhhhccccCCCCCCCccCC
Q 004290          701 SVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS  763 (763)
Q Consensus       701 ~~~~~~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  763 (763)
                      -++..... -.+|-...+.+.++.|+++..+.+..++.-+.+-++++| |..|.+++++|+|+
T Consensus       698 ~p~~~as~-~h~pns~~iv~~~e~n~Q~~sR~~~~~l~~~~~~~fr~~-~~~g~~h~~~~t~~  758 (758)
T KOG1310|consen  698 TPPSGASR-NHRPNSYAIVATNEMNRQQGSRDSYITLRMLSHLAFRAH-LDDGFGHEVLDTDA  758 (758)
T ss_pred             CCCccccc-ccCCchhhhhhhhhhhhhhhccCCcchHHHHHHHHHHHh-hcccCCcccccCCC
Confidence            66655433 344555566777888887777655555666677777777 99999999999985

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-49  Score=380.29  Aligned_cols=332  Identities=20%  Similarity=0.313  Sum_probs=280.6

Q ss_pred             cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004290           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (763)
Q Consensus        42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i  121 (763)
                      +-..+.||.++|.|++|+|+|..||||+.|.++|+||+.+...+.+. .+|...|.|++|+|+  |..|++|+.||+|++
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPD--gk~iASG~~dg~I~l  183 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPD--GKKIASGSKDGSIRL  183 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCC--cchhhccccCCeEEE
Confidence            33457899999999999999999999999999999999999999999 899999999999999  899999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC----CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (763)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  197 (763)
                      ||..+++         .....+.+|...|++++|.|-    ...+|++++.||.|+|||+..++                
T Consensus       184 wdpktg~---------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~----------------  238 (480)
T KOG0271|consen  184 WDPKTGQ---------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT----------------  238 (480)
T ss_pred             ecCCCCC---------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce----------------
Confidence            9998754         336788999999999999873    34689999999999999998765                


Q ss_pred             EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004290          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (763)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (763)
                               .+....+|+.+|+|+.|.-+  .+|++|+.|++|++|+...+.....+                    .||
T Consensus       239 ---------~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~l--------------------kGH  287 (480)
T KOG0271|consen  239 ---------CVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCREL--------------------KGH  287 (480)
T ss_pred             ---------EEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHHHhh--------------------ccc
Confidence                     23334578999999999875  49999999999999999987655443                    445


Q ss_pred             CccceeEEEEc-----------CCCC-------------------------EEEEEeCCCeEEEEECCCCC-ccceEeec
Q 004290          278 SSLHLTHVTFS-----------PNGE-------------------------EVLLSYSGEHVYLMDVNHAG-GRAMRYTV  320 (763)
Q Consensus       278 ~~~~i~~v~~s-----------pdg~-------------------------~l~~~s~d~~i~iwd~~~~~-~~~~~~~~  320 (763)
                      .. +|+.++.+           |.++                         .|++|+.|.++++|+....+ ......+|
T Consensus       288 ah-wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH  366 (480)
T KOG0271|consen  288 AH-WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH  366 (480)
T ss_pred             ch-heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch
Confidence            44 57777655           3333                         49999999999999987755 44567778


Q ss_pred             CCCCeeeeeccCCCCcccCCCCCcccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCC
Q 004290          321 GDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP  400 (763)
Q Consensus       321 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  400 (763)
                      ...++.+.|+|+..-++..+                                                            
T Consensus       367 q~lVn~V~fSPd~r~IASaS------------------------------------------------------------  386 (480)
T KOG0271|consen  367 QALVNHVSFSPDGRYIASAS------------------------------------------------------------  386 (480)
T ss_pred             hhheeeEEECCCccEEEEee------------------------------------------------------------
Confidence            88888899999744322111                                                            


Q ss_pred             ccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHH
Q 004290          401 MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK  480 (763)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~  480 (763)
                                                                                                      
T Consensus       387 --------------------------------------------------------------------------------  386 (480)
T KOG0271|consen  387 --------------------------------------------------------------------------------  386 (480)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhhhhccccCCCCCCCC
Q 004290          481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEG  560 (763)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (763)
                                                                                                      
T Consensus       387 --------------------------------------------------------------------------------  386 (480)
T KOG0271|consen  387 --------------------------------------------------------------------------------  386 (480)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCcceeeeccCCCccccccCCCCCCCCCCCCCCCCCCCCcccccccceEEeeecccccceeeeecccCCCC
Q 004290          561 RDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGD  640 (763)
Q Consensus       561 ~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~  640 (763)
                                                              ....+++|...+++++..|.||...++.++    +|.|.+
T Consensus       387 ----------------------------------------FDkSVkLW~g~tGk~lasfRGHv~~VYqva----wsaDsR  422 (480)
T KOG0271|consen  387 ----------------------------------------FDKSVKLWDGRTGKFLASFRGHVAAVYQVA----WSADSR  422 (480)
T ss_pred             ----------------------------------------cccceeeeeCCCcchhhhhhhccceeEEEE----eccCcc
Confidence                                                    111233455556778889999999999998    999999


Q ss_pred             EEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEc
Q 004290          641 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT  697 (763)
Q Consensus       641 ~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~  697 (763)
                      +|+|||.|.+++|||+.+.++..-|.||.+.|.+|.|+|||..++|||.|..+|+|.
T Consensus       423 LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  423 LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999999999999999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.4e-46  Score=359.90  Aligned_cols=205  Identities=25%  Similarity=0.332  Sum_probs=184.8

Q ss_pred             ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (763)
Q Consensus        47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~  126 (763)
                      -|-+.+|..+.|+.|++.|||||.+|.++||+..+...+.++ .+|...|.++.|+|..++..++||+.||++++|++.+
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence            467889999999999999999999999999999999889999 8999999999999983367999999999999999996


Q ss_pred             CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (763)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (763)
                      .          .++..+.+|...|..++|+| +|++|+|++.|.+-++||++++...                       
T Consensus       251 e----------~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~El-----------------------  296 (459)
T KOG0272|consen  251 E----------TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSEL-----------------------  296 (459)
T ss_pred             C----------cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhh-----------------------
Confidence            2          56899999999999999999 7799999999999999999998632                       


Q ss_pred             eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004290          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (763)
Q Consensus       207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~  286 (763)
                        ....+|...|.+|+|+|+ |.++++|+.|..-||||+|++..+..+                    .||.. .|.+|.
T Consensus       297 --L~QEGHs~~v~~iaf~~D-GSL~~tGGlD~~~RvWDlRtgr~im~L--------------------~gH~k-~I~~V~  352 (459)
T KOG0272|consen  297 --LLQEGHSKGVFSIAFQPD-GSLAATGGLDSLGRVWDLRTGRCIMFL--------------------AGHIK-EILSVA  352 (459)
T ss_pred             --HhhcccccccceeEecCC-CceeeccCccchhheeecccCcEEEEe--------------------ccccc-ceeeEe
Confidence              233578899999999998 789999999999999999999655433                    45655 599999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCC
Q 004290          287 FSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       287 ~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      |+|+|..|++|+.|++++|||++.
T Consensus       353 fsPNGy~lATgs~Dnt~kVWDLR~  376 (459)
T KOG0272|consen  353 FSPNGYHLATGSSDNTCKVWDLRM  376 (459)
T ss_pred             ECCCceEEeecCCCCcEEEeeecc
Confidence            999999999999999999999987

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.1e-45  Score=347.30  Aligned_cols=345  Identities=19%  Similarity=0.230  Sum_probs=262.1

Q ss_pred             eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE
Q 004290           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (763)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  162 (763)
                      ++...+ .||.++|.|+.|+|+  +..|++|+.|.++|+||+.+.          .+..+.++|...|.|++|+| ++..
T Consensus       106 rCssS~-~GH~e~Vl~~~fsp~--g~~l~tGsGD~TvR~WD~~Te----------Tp~~t~KgH~~WVlcvawsP-Dgk~  171 (480)
T KOG0271|consen  106 RCSSSI-AGHGEAVLSVQFSPT--GSRLVTGSGDTTVRLWDLDTE----------TPLFTCKGHKNWVLCVAWSP-DGKK  171 (480)
T ss_pred             eecccc-CCCCCcEEEEEecCC--CceEEecCCCceEEeeccCCC----------CcceeecCCccEEEEEEECC-Ccch
Confidence            344556 799999999999998  899999999999999999983          56899999999999999999 7799


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC----CCcEEEEEeCCC
Q 004290          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST----RPHLLLVGGSDA  238 (763)
Q Consensus       163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~----~~~~l~sgs~Dg  238 (763)
                      |++|+.||+|++||..++++.                        ...+++|...|++++|.|-    ...+||+++.||
T Consensus       172 iASG~~dg~I~lwdpktg~~~------------------------g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg  227 (480)
T KOG0271|consen  172 IASGSKDGSIRLWDPKTGQQI------------------------GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG  227 (480)
T ss_pred             hhccccCCeEEEecCCCCCcc------------------------cccccCcccceeEEeecccccCCCccceecccCCC
Confidence            999999999999999998754                        2334578899999999874    246899999999


Q ss_pred             cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEe
Q 004290          239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY  318 (763)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~  318 (763)
                      .|+|||+..++.+..+                    .||.. +|+||+|--+| +|++++.|++|++|+...+.......
T Consensus       228 ~vrIWd~~~~~~~~~l--------------------sgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lk  285 (480)
T KOG0271|consen  228 SVRIWDTKLGTCVRTL--------------------SGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELK  285 (480)
T ss_pred             CEEEEEccCceEEEEe--------------------ccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhc
Confidence            9999999876544322                    66777 69999998776 69999999999999999987777777


Q ss_pred             ecCCCCeeeeeccCCCCcccCCCCCcccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCC
Q 004290          319 TVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI  398 (763)
Q Consensus       319 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  398 (763)
                      +|.+-++.++.+-+.-     .-...|-+.+..++     ...+...                .|++-|+.++       
T Consensus       286 GHahwvN~lalsTdy~-----LRtgaf~~t~~~~~-----~~se~~~----------------~Al~rY~~~~-------  332 (480)
T KOG0271|consen  286 GHAHWVNHLALSTDYV-----LRTGAFDHTGRKPK-----SFSEEQK----------------KALERYEAVL-------  332 (480)
T ss_pred             ccchheeeeeccchhh-----hhccccccccccCC-----ChHHHHH----------------HHHHHHHHhh-------
Confidence            8888777777664311     00111111111100     0000000                0000000000       


Q ss_pred             CCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhH
Q 004290          399 GPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA  478 (763)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~  478 (763)
                                                                                                      
T Consensus       333 --------------------------------------------------------------------------------  332 (480)
T KOG0271|consen  333 --------------------------------------------------------------------------------  332 (480)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhhhhccccCCCCCC
Q 004290          479 EKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGD  558 (763)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (763)
                                         ..+                                                          
T Consensus       333 -------------------~~~----------------------------------------------------------  335 (480)
T KOG0271|consen  333 -------------------KDS----------------------------------------------------------  335 (480)
T ss_pred             -------------------ccC----------------------------------------------------------
Confidence                               000                                                          


Q ss_pred             CCcccccccccCCcceeeeccCCCccccccCCCCCCCCCCCC-CCCCCCCCc-ccccccceEEeeecccccceeeeeccc
Q 004290          559 EGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSS-QNDRIPYQP-ETVIDMKQRYVGHCNVGTDIKQASFLG  636 (763)
Q Consensus       559 ~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~gh~~~~~~i~~~~~~s  636 (763)
                                                         +...+++ ......+|. ....+++.++.||...+..+.    ||
T Consensus       336 -----------------------------------~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~----fS  376 (480)
T KOG0271|consen  336 -----------------------------------GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS----FS  376 (480)
T ss_pred             -----------------------------------cceeEEecCCceEEEecccccccchhhhhchhhheeeEE----EC
Confidence                                               0000111 111122222 234447788999999998887    99


Q ss_pred             CCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccCCCCCCChh
Q 004290          637 QRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTA  716 (763)
Q Consensus       637 ~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~g~~~~~~~  716 (763)
                      ||++||||+|.|.+|++||..+|+.+.+|+||-+.|-.|+||.|.++|+|||.|.++|||++++.+....+.||...+.+
T Consensus       377 Pd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~  456 (480)
T KOG0271|consen  377 PDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA  456 (480)
T ss_pred             CCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988753

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1e-40  Score=308.98  Aligned_cols=216  Identities=23%  Similarity=0.335  Sum_probs=188.6

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      +..++|+||...|.++.|++|.++|+|+|.||.+.|||.-+...++.+ .-....|..++|+|.  ++++++|+.|+...
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sPS--g~~VAcGGLdN~Cs  122 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSPS--GNFVACGGLDNKCS  122 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECCC--CCeEEecCcCceeE
Confidence            445899999999999999999999999999999999999998888888 667889999999999  89999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  200 (763)
                      ||++.+.+...    .....+.+.+|.+.+.|..|-+ + ..|+|++.|.++.+||+++++.                  
T Consensus       123 iy~ls~~d~~g----~~~v~r~l~gHtgylScC~f~d-D-~~ilT~SGD~TCalWDie~g~~------------------  178 (343)
T KOG0286|consen  123 IYPLSTRDAEG----NVRVSRELAGHTGYLSCCRFLD-D-NHILTGSGDMTCALWDIETGQQ------------------  178 (343)
T ss_pred             EEecccccccc----cceeeeeecCccceeEEEEEcC-C-CceEecCCCceEEEEEcccceE------------------
Confidence            99999652221    1234567899999999999987 4 4667999999999999999873                  


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (763)
                             +..+.+|.+.|.++++.|.+++.|++|+-|+..++||+|.+..             ++.|       .||.. 
T Consensus       179 -------~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c-------------~qtF-------~ghes-  230 (343)
T KOG0286|consen  179 -------TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC-------------VQTF-------EGHES-  230 (343)
T ss_pred             -------EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce-------------eEee-------ccccc-
Confidence                   3344589999999999996699999999999999999998754             4444       67777 


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .|++|+|.|+|.-+++|+.|++.++||++..
T Consensus       231 DINsv~ffP~G~afatGSDD~tcRlyDlRaD  261 (343)
T KOG0286|consen  231 DINSVRFFPSGDAFATGSDDATCRLYDLRAD  261 (343)
T ss_pred             ccceEEEccCCCeeeecCCCceeEEEeecCC
Confidence            5999999999999999999999999999984

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.6e-40  Score=300.69  Aligned_cols=189  Identities=18%  Similarity=0.307  Sum_probs=158.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004290           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (763)
Q Consensus        62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  141 (763)
                      .-+|||++.|.+||+|...+|.+.+++ +...+.|+.+...|+  +..|++++ .-.||+||+++.+.        .|+.
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTpd--k~~LAaa~-~qhvRlyD~~S~np--------~Pv~   77 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITPD--KKDLAAAG-NQHVRLYDLNSNNP--------NPVA   77 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcCC--cchhhhcc-CCeeEEEEccCCCC--------Ccee
Confidence            358999999999999999999999999 667789999999999  67888777 46899999997542        4799


Q ss_pred             eeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEE
Q 004290          142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  221 (763)
Q Consensus       142 ~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  221 (763)
                      ++.+|...|+.+.|.. ++++++|||+||+++|||+|.....           +.               -.+..+|+++
T Consensus        78 t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~q-----------R~---------------~~~~spVn~v  130 (311)
T KOG0315|consen   78 TFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQ-----------RN---------------YQHNSPVNTV  130 (311)
T ss_pred             EEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccc-----------hh---------------ccCCCCcceE
Confidence            9999999999999998 7799999999999999999985421           11               1245789999


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 004290          222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE  301 (763)
Q Consensus       222 ~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~  301 (763)
                      ..+|. ...|++|..+|.|++||+........             ..|       .....|.++...|||.+|+++...|
T Consensus       131 vlhpn-QteLis~dqsg~irvWDl~~~~c~~~-------------liP-------e~~~~i~sl~v~~dgsml~a~nnkG  189 (311)
T KOG0315|consen  131 VLHPN-QTELISGDQSGNIRVWDLGENSCTHE-------------LIP-------EDDTSIQSLTVMPDGSMLAAANNKG  189 (311)
T ss_pred             EecCC-cceEEeecCCCcEEEEEccCCccccc-------------cCC-------CCCcceeeEEEcCCCcEEEEecCCc
Confidence            99997 46899999999999999997532221             111       1112599999999999999999999


Q ss_pred             eEEEEECCC
Q 004290          302 HVYLMDVNH  310 (763)
Q Consensus       302 ~i~iwd~~~  310 (763)
                      ..++|++-+
T Consensus       190 ~cyvW~l~~  198 (311)
T KOG0315|consen  190 NCYVWRLLN  198 (311)
T ss_pred             cEEEEEccC
Confidence            999999877

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.3e-40  Score=338.54  Aligned_cols=401  Identities=21%  Similarity=0.224  Sum_probs=293.5

Q ss_pred             cccccchhhhhccccceeecc-ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCC
Q 004290           28 HSLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~g-H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~  106 (763)
                      .-+++|+  +.+.++++.++. |+++|..++|+|.|.+|++|+.|+.|+|||+..+.+.+.| .||.+.|.++.|+|+.+
T Consensus        84 ~llrv~~--L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~  160 (775)
T KOG0319|consen   84 QLLRVWS--LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWN  160 (775)
T ss_pred             ceEEEEE--cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccc
Confidence            3455555  666789999998 9999999999999999999999999999999999999999 89999999999999875


Q ss_pred             CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCC--
Q 004290          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP--  184 (763)
Q Consensus       107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~--  184 (763)
                      ..+|++|..|++|++||++...         .++..+..|...|++++|.+ ++..++++|.|..+.+||+.+.+...  
T Consensus       161 ~~lL~sg~~D~~v~vwnl~~~~---------tcl~~~~~H~S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~l  230 (775)
T KOG0319|consen  161 RWLLASGATDGTVRVWNLNDKR---------TCLHTMILHKSAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTL  230 (775)
T ss_pred             hhheeecCCCceEEEEEcccCc---------hHHHHHHhhhhheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhhee
Confidence            6789999999999999999632         24788899999999999999 46778899999999999996644320  


Q ss_pred             -------------C---------------------------------CCCCC------------------cccceEEEec
Q 004290          185 -------------P---------------------------------AGSSH------------------QECRNILLDL  200 (763)
Q Consensus       185 -------------~---------------------------------~~~~~------------------~~~~~~~~~~  200 (763)
                                   .                                 ....+                  .+....+++.
T Consensus       231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~  310 (775)
T KOG0319|consen  231 PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDE  310 (775)
T ss_pred             chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEc
Confidence                         0                                 00000                  0111111111


Q ss_pred             CCC---------------------------------cee-------eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004290          201 RCG---------------------------------AKR-------SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (763)
Q Consensus       201 ~~~---------------------------------~~~-------~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i  240 (763)
                      .+.                                 ..+       .....++|...|.+++...+ |.+|++|+.|+++
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~-g~llat~sKD~sv  389 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSS-GDLLATGSKDKSV  389 (775)
T ss_pred             cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeeccc-CcEEEEecCCceE
Confidence            000                                 000       00012678888889884443 5799999999999


Q ss_pred             EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCeEEEEECCCCCccceEee
Q 004290          241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAMRYT  319 (763)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg-~~l~~~s~d~~i~iwd~~~~~~~~~~~~  319 (763)
                      ++|.+.+.....         .|+..       ..||.+ .|.+|+++..+ .+|+++|.|+++++|++...+.......
T Consensus       390 ilWr~~~~~~~~---------~~~a~-------~~gH~~-svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~  452 (775)
T KOG0319|consen  390 ILWRLNNNCSKS---------LCVAQ-------ANGHTN-SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIV  452 (775)
T ss_pred             EEEEecCCcchh---------hhhhh-------hccccc-ccceeeecccCccEEEEecCCceEEEecCCCcccccccce
Confidence            999885432111         11111       156777 59999998765 6788999999999999987331100000


Q ss_pred             cCCCCeeeeeccCCCCcccCCCCCcccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCC
Q 004290          320 VGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG  399 (763)
Q Consensus       320 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  399 (763)
                               |                                                        .+.....       
T Consensus       453 ---------~--------------------------------------------------------~~~~t~~-------  460 (775)
T KOG0319|consen  453 ---------L--------------------------------------------------------TCRYTER-------  460 (775)
T ss_pred             ---------e--------------------------------------------------------hhhHHHH-------
Confidence                     0                                                        0000000       


Q ss_pred             CccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHH
Q 004290          400 PMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE  479 (763)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~  479 (763)
                                                                                  +|+...+.....|+..-+++
T Consensus       461 ------------------------------------------------------------aHdKdIN~Vaia~ndkLiAT  480 (775)
T KOG0319|consen  461 ------------------------------------------------------------AHDKDINCVAIAPNDKLIAT  480 (775)
T ss_pred             ------------------------------------------------------------hhcccccceEecCCCceEEe
Confidence                                                                        00111111111122111111


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhhhhccccCCCCCCC
Q 004290          480 KVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDE  559 (763)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (763)
                      +                                                                               
T Consensus       481 ~-------------------------------------------------------------------------------  481 (775)
T KOG0319|consen  481 G-------------------------------------------------------------------------------  481 (775)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             CcccccccccCCcceeeeccCCCccccccCCCCCCCCCCCCCCCCCCCCcccccccceEEeeecccccceeeeecccCCC
Q 004290          560 GRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRG  639 (763)
Q Consensus       560 ~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~  639 (763)
                                                              +.....++|..........+.||+..+.|++    |++++
T Consensus       482 ----------------------------------------SqDktaKiW~le~~~l~~vLsGH~RGvw~V~----Fs~~d  517 (775)
T KOG0319|consen  482 ----------------------------------------SQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS----FSKND  517 (775)
T ss_pred             ----------------------------------------ccccceeeecccCceEEEEeeCCccceEEEE----ecccc
Confidence                                                    1233344555555667889999999999999    99999


Q ss_pred             CEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccCCCCCCC
Q 004290          640 DYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPD  714 (763)
Q Consensus       640 ~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~g~~~~~  714 (763)
                      +.|||+|.|++|+||.+.++.++++|.||+..|..++|-.++..|+|+|.||.||||++++.++..++.+|..++
T Consensus       518 q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Drv  592 (775)
T KOG0319|consen  518 QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRV  592 (775)
T ss_pred             ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcccee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999884

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-39  Score=313.78  Aligned_cols=208  Identities=19%  Similarity=0.212  Sum_probs=168.7

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~---~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg  117 (763)
                      +..++|+.|++.|.-+.||++|++|||++.|.++.||++....   ..+++ .+|..+|..+.|+|+  +++|++|+.|.
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPD--dryLlaCg~~e  291 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPD--DRYLLACGFDE  291 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCC--CCeEEecCchH
Confidence            4557789999999999999999999999999999999986543   35666 799999999999999  79999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  196 (763)
                      .+.+||+.++..          ...+ .+|...+.+.+|.| ++..|++|+.|++|..||+.....-             
T Consensus       292 ~~~lwDv~tgd~----------~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~-------------  347 (519)
T KOG0293|consen  292 VLSLWDVDTGDL----------RHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILG-------------  347 (519)
T ss_pred             heeeccCCcchh----------hhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhh-------------
Confidence            999999998543          2222 23568899999999 6688999999999999999875421             


Q ss_pred             EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (763)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (763)
                      -|.            ......|.+++..++ |+++++.+.|..|++|+..+...+...                    ..
T Consensus       348 ~W~------------gvr~~~v~dlait~D-gk~vl~v~~d~~i~l~~~e~~~dr~li--------------------se  394 (519)
T KOG0293|consen  348 NWE------------GVRDPKVHDLAITYD-GKYVLLVTVDKKIRLYNREARVDRGLI--------------------SE  394 (519)
T ss_pred             ccc------------ccccceeEEEEEcCC-CcEEEEEecccceeeechhhhhhhccc--------------------cc
Confidence            010            001245889999998 789999999999999998865432111                    11


Q ss_pred             CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      +.  +|++.++|.||+++++.-.+..|++||+..
T Consensus       395 ~~--~its~~iS~d~k~~LvnL~~qei~LWDl~e  426 (519)
T KOG0293|consen  395 EQ--PITSFSISKDGKLALVNLQDQEIHLWDLEE  426 (519)
T ss_pred             cC--ceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence            22  599999999999999999999999999985

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.7e-40  Score=326.19  Aligned_cols=400  Identities=32%  Similarity=0.537  Sum_probs=321.9

Q ss_pred             CchhhhhhccccCCCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 004290            9 GSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI   88 (763)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~   88 (763)
                      ++.-.-+.+|+++.+..+.+.+-....+++++.+...|.+|.++|+.|.|+..|..|+|||.|.+|.+||+..+.....+
T Consensus       101 w~~~~~l~~Re~gss~~f~~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f  180 (559)
T KOG1334|consen  101 WQSGTALHQRELGSSSRFVYEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF  180 (559)
T ss_pred             cchhhHHHhhhcCchhHHHHHhhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc
Confidence            44455677889998888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC
Q 004290           89 ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE  168 (763)
Q Consensus        89 ~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~  168 (763)
                      ..+|...|+...|.|.++..-+++++.||.|++=.+..... +      +-...+..|.++|+.++..|..+.-|.|++.
T Consensus       181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~-~------e~t~rl~~h~g~vhklav~p~sp~~f~S~ge  253 (559)
T KOG1334|consen  181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGY-V------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE  253 (559)
T ss_pred             ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccc-e------ecceecccccCccceeeecCCCCCccccccc
Confidence            89999999999999998788999999999999887764322 1      2234556799999999999999999999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC
Q 004290          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (763)
Q Consensus       169 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~  248 (763)
                      |+.+.-+|++......           .+. .+.       .........++|+.+|.+.+.|++|+.|..+|+||.+..
T Consensus       254 D~~v~~~Dlr~~~pa~-----------~~~-cr~-------~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~  314 (559)
T KOG1334|consen  254 DAVVFHIDLRQDVPAE-----------KFV-CRE-------ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRI  314 (559)
T ss_pred             ccceeeeeeccCCccc-----------eee-eec-------cCCccceeeeeEecCCCCccccccCChhhhhhhhcccch
Confidence            9999999999876331           111 000       001113467899999998889999999999999999976


Q ss_pred             CCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeee
Q 004290          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS  328 (763)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  328 (763)
                      +.-..       ...+..|+|.|+....+.  .|++++|+.++..|+++..|-.|++|.-..+.-        .      
T Consensus       315 ~~e~~-------n~~~~~f~p~hl~~d~~v--~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G--------~------  371 (559)
T KOG1334|consen  315 DKEEN-------NGVLDKFCPHHLVEDDPV--NITGLVYSHDGSELLASYNDEDIYLFNKSMGDG--------S------  371 (559)
T ss_pred             hhccc-------cchhhhcCCccccccCcc--cceeEEecCCccceeeeecccceEEeccccccC--------C------
Confidence            53321       135678889998773333  599999999999999999999999994333210        0      


Q ss_pred             eccCCCCcccCCCCCcccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhh
Q 004290          329 FTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLC  408 (763)
Q Consensus       329 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  408 (763)
                       .                                                                              
T Consensus       372 -~------------------------------------------------------------------------------  372 (559)
T KOG1334|consen  372 -E------------------------------------------------------------------------------  372 (559)
T ss_pred             -C------------------------------------------------------------------------------
Confidence             0                                                                              


Q ss_pred             HHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHHH
Q 004290          409 IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI  488 (763)
Q Consensus       409 ~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  488 (763)
                                                 ++|..                                                
T Consensus       373 ---------------------------p~~~s------------------------------------------------  377 (559)
T KOG1334|consen  373 ---------------------------PDPSS------------------------------------------------  377 (559)
T ss_pred             ---------------------------CCCCc------------------------------------------------
Confidence                                       00000                                                


Q ss_pred             HHHHhhcccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhhhhccccCCCCCCCCcccccccc
Q 004290          489 AAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFL  568 (763)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (763)
                                                                                                      
T Consensus       378 --------------------------------------------------------------------------------  377 (559)
T KOG1334|consen  378 --------------------------------------------------------------------------------  377 (559)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcceeeeccCCCccccccCCCCCCCCCCCCCCCCCCCCcccccccceEEeeecccccceeeeecccCCCCEEEEecCC
Q 004290          569 HGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDD  648 (763)
Q Consensus       569 ~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D  648 (763)
                                                               ....-..+.|+||+|..| ||.++||+|...|++|||++
T Consensus       378 -----------------------------------------~~~~~~k~vYKGHrN~~T-VKgVNFfGPrsEyVvSGSDC  415 (559)
T KOG1334|consen  378 -----------------------------------------PREQYVKRVYKGHRNSRT-VKGVNFFGPRSEYVVSGSDC  415 (559)
T ss_pred             -----------------------------------------chhhccchhhcccccccc-cceeeeccCccceEEecCcc
Confidence                                                     000013345999999999 99999999999999999999


Q ss_pred             CcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccCCCCCCChhhHHHHHHHHHHH
Q 004290          649 GRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRK  728 (763)
Q Consensus       649 g~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~g~~~~~~~~~~~~~~~n~~~  728 (763)
                      |.|+|||..++++|+.++|....|+||..||..++|||+|+|.-||||.+.+.+.....        ..+++++++|...
T Consensus       416 GhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~--------~~lk~vi~rN~~~  487 (559)
T KOG1334|consen  416 GHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEP--------TLLKQVIKRNKRE  487 (559)
T ss_pred             ceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccccCh--------hhHHHHHhhhccc
Confidence            99999999999999999999889999999999999999999999999999777755432        2577899988876


Q ss_pred             hhc-ccccCCcHHH
Q 004290          729 LSR-NREHSLSYEL  741 (763)
Q Consensus       729 ~~~-~~~~~~~~~~  741 (763)
                      ..+ .....++++.
T Consensus       488 ~~ed~~~~t~~~d~  501 (559)
T KOG1334|consen  488 RDEDSLTVTDPFDQ  501 (559)
T ss_pred             cccccccccCcHHH
Confidence            443 3334466663

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6.3e-39  Score=316.72  Aligned_cols=210  Identities=19%  Similarity=0.307  Sum_probs=179.2

Q ss_pred             ccceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCC-CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004290           41 SQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~-~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~  118 (763)
                      +.++.+.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +++++++ .+|..+|.+++|+++  |..|+|++.|+.
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~--g~~fLS~sfD~~  281 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNC--GTSFLSASFDRF  281 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhcccc--CCeeeeeeccee
Confidence            67899999999999999999 899999999999999999976 8899999 899999999999999  899999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  198 (763)
                      |++||++++.          ++..+. -...++|+.|+|++.+.|++|+.|+.|+.||+|+++.                
T Consensus       282 lKlwDtETG~----------~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv----------------  334 (503)
T KOG0282|consen  282 LKLWDTETGQ----------VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV----------------  334 (503)
T ss_pred             eeeeccccce----------EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH----------------
Confidence            9999999843          345554 4557899999998889999999999999999999873                


Q ss_pred             ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (763)
                               +.....|...|..+.|-+. +.++++.+.|+.++||+.+..-++.....                 ...| 
T Consensus       335 ---------vqeYd~hLg~i~~i~F~~~-g~rFissSDdks~riWe~~~~v~ik~i~~-----------------~~~h-  386 (503)
T KOG0282|consen  335 ---------VQEYDRHLGAILDITFVDE-GRRFISSSDDKSVRIWENRIPVPIKNIAD-----------------PEMH-  386 (503)
T ss_pred             ---------HHHHHhhhhheeeeEEccC-CceEeeeccCccEEEEEcCCCccchhhcc-----------------hhhc-
Confidence                     3333457788999999997 78999999999999999997654322210                 0112 


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                        ...+|..+|+++++++=+.|+.|.+|.+..
T Consensus       387 --smP~~~~~P~~~~~~aQs~dN~i~ifs~~~  416 (503)
T KOG0282|consen  387 --TMPCLTLHPNGKWFAAQSMDNYIAIFSTVP  416 (503)
T ss_pred             --cCcceecCCCCCeehhhccCceEEEEeccc
Confidence              377899999999999999999999998655

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.5e-37  Score=287.77  Aligned_cols=209  Identities=24%  Similarity=0.322  Sum_probs=179.3

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      .++..+.||++.|+.+.|+|+|..||||+.|..|.+|++.... -..++ .+|.+.|..+.|.++  +..|++++.|++|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d--~s~i~S~gtDk~v  114 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRD--GSHILSCGTDKTV  114 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee-ccccceeEeeeeccC--CCEEEEecCCceE
Confidence            3456678999999999999999999999999999999965443 34445 799999999999999  7999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      +.||++++          +.++.+++|.+.|+.+.-...+..++.|++.||++++||+|+...+..              
T Consensus       115 ~~wD~~tG----------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t--------------  170 (338)
T KOG0265|consen  115 RGWDAETG----------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT--------------  170 (338)
T ss_pred             EEEecccc----------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc--------------
Confidence            99999984          347889999999999996666778999999999999999998763310              


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                                  ......++++.|... +..+.+|+-|+.|++||++.......+                    .||..
T Consensus       171 ------------~~~kyqltAv~f~d~-s~qv~sggIdn~ikvWd~r~~d~~~~l--------------------sGh~D  217 (338)
T KOG0265|consen  171 ------------FENKYQLTAVGFKDT-SDQVISGGIDNDIKVWDLRKNDGLYTL--------------------SGHAD  217 (338)
T ss_pred             ------------cccceeEEEEEeccc-ccceeeccccCceeeeccccCcceEEe--------------------ecccC
Confidence                        123567899999987 689999999999999999987654433                    56777


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                       .|+.+..+|+|.++++.+.|.++++||++.
T Consensus       218 -tIt~lsls~~gs~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  218 -TITGLSLSRYGSFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             -ceeeEEeccCCCccccccccceEEEEEecc
Confidence             699999999999999999999999999987

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.6e-38  Score=307.15  Aligned_cols=261  Identities=19%  Similarity=0.258  Sum_probs=235.3

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC-CCCEEEEEeC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASE  168 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-~~~~l~s~s~  168 (763)
                      .+-+.+|..+.|+++  +..|+||+.+|.+++|...+.          ..+.+|.+|...|.++.|+|. +...++||+.
T Consensus       172 ~gd~rPis~~~fS~d--s~~laT~swsG~~kvW~~~~~----------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~  239 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRD--SKHLATGSWSGLVKVWSVPQC----------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASA  239 (459)
T ss_pred             ccCCCcceeeEeecC--CCeEEEeecCCceeEeecCCc----------ceeEEEeccccceeeEEEccCCCccceeeecc
Confidence            467789999999999  799999999999999999863          448899999999999999997 4678999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC
Q 004290          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (763)
Q Consensus       169 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~  248 (763)
                      ||++++|++.+..+                         +....+|...|..++|+|+ |++|++++.|.+-|+||++++
T Consensus       240 Dgtvklw~~~~e~~-------------------------l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk  293 (459)
T KOG0272|consen  240 DGTVKLWKLSQETP-------------------------LQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETK  293 (459)
T ss_pred             CCceeeeccCCCcc-------------------------hhhhhcchhhheeeeecCC-Cceeeecccccchhhcccccc
Confidence            99999999987653                         4445678889999999997 899999999999999999987


Q ss_pred             CCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeee
Q 004290          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS  328 (763)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  328 (763)
                      ..+.                    ...||.. .|.+++|.|||..+++|+.|..-+|||++++.                
T Consensus       294 ~ElL--------------------~QEGHs~-~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr----------------  336 (459)
T KOG0272|consen  294 SELL--------------------LQEGHSK-GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR----------------  336 (459)
T ss_pred             hhhH--------------------hhccccc-ccceeEecCCCceeeccCccchhheeecccCc----------------
Confidence            6432                    1267777 59999999999999999999999999999953                


Q ss_pred             eccCCCCcccCCCCCcccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhh
Q 004290          329 FTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLC  408 (763)
Q Consensus       329 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  408 (763)
                                                                                                      
T Consensus       337 --------------------------------------------------------------------------------  336 (459)
T KOG0272|consen  337 --------------------------------------------------------------------------------  336 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHHH
Q 004290          409 IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI  488 (763)
Q Consensus       409 ~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  488 (763)
                                                                                                      
T Consensus       337 --------------------------------------------------------------------------------  336 (459)
T KOG0272|consen  337 --------------------------------------------------------------------------------  336 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhcccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhhhhccccCCCCCCCCcccccccc
Q 004290          489 AAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFL  568 (763)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (763)
                                                                                                      
T Consensus       337 --------------------------------------------------------------------------------  336 (459)
T KOG0272|consen  337 --------------------------------------------------------------------------------  336 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcceeeeccCCCccccccCCCCCCCCCCCCCCCCCCCCcccccccceEEeeecccccceeeeecccCCCCEEEEecCC
Q 004290          569 HGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDD  648 (763)
Q Consensus       569 ~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D  648 (763)
                                                                    +++.+.||...|..+.    |+|+|..|||||.|
T Consensus       337 ----------------------------------------------~im~L~gH~k~I~~V~----fsPNGy~lATgs~D  366 (459)
T KOG0272|consen  337 ----------------------------------------------CIMFLAGHIKEILSVA----FSPNGYHLATGSSD  366 (459)
T ss_pred             ----------------------------------------------EEEEecccccceeeEe----ECCCceEEeecCCC
Confidence                                                          4456889999999888    99999999999999


Q ss_pred             CcEEEEEcCcCcEEEEEecCCcceEEEEeeC-CCCeEEEEeCCCcEEEEcCCCCCCccccCCCCCCCh
Q 004290          649 GRWFIWEKQTGRLIKMLLGDEAVVNCVQCHP-FDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT  715 (763)
Q Consensus       649 g~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp-~~~~laS~s~D~~IrvW~~~~~~~~~~~~g~~~~~~  715 (763)
                      ++++|||+.--+++.++.+|...|+.|.|+| .|++|+|+|.|+++|||...+..++.++.||.+.+.
T Consensus       367 nt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~  434 (459)
T KOG0272|consen  367 NTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVI  434 (459)
T ss_pred             CcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceE
Confidence            9999999999999999999999999999999 679999999999999999999999999999999875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.7e-37  Score=292.95  Aligned_cols=222  Identities=16%  Similarity=0.264  Sum_probs=188.5

Q ss_pred             cccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcE
Q 004290           30 LQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDEL  109 (763)
Q Consensus        30 ~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~  109 (763)
                      .+.....+.+..+...+.||..+|+.+-|+|+-.++|+++.|++|++||..++++...+ .||...|.++.|+..  |.+
T Consensus        88 ~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a~--Gk~  164 (406)
T KOG0295|consen   88 KRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDAS--GKY  164 (406)
T ss_pred             ccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEecC--ccE
Confidence            33344456667777888999999999999999999999999999999999999998888 899999999999998  899


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004290          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (763)
Q Consensus       110 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  189 (763)
                      |++++.|-.+++||..+.         .++++.+.+|...|.++.|-| .+.++++++.|.+|++|++.++-        
T Consensus       165 l~tcSsDl~~~LWd~~~~---------~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~--------  226 (406)
T KOG0295|consen  165 LATCSSDLSAKLWDFDTF---------FRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGY--------  226 (406)
T ss_pred             EEecCCccchhheeHHHH---------HHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccce--------
Confidence            999999999999999863         255788889999999999999 45899999999999999999875        


Q ss_pred             CcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccc
Q 004290          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (763)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  269 (763)
                                       .+..+++|...|..++.+.+ |.++|+++.|.++++|-+.+++....+               
T Consensus       227 -----------------cv~t~~~h~ewvr~v~v~~D-Gti~As~s~dqtl~vW~~~t~~~k~~l---------------  273 (406)
T KOG0295|consen  227 -----------------CVKTFPGHSEWVRMVRVNQD-GTIIASCSNDQTLRVWVVATKQCKAEL---------------  273 (406)
T ss_pred             -----------------eEEeccCchHhEEEEEecCC-eeEEEecCCCceEEEEEeccchhhhhh---------------
Confidence                             34455678889999999997 789999999999999999987543332               


Q ss_pred             ccccCCCCCccceeEEEEcCC---------------CCEEEEEeCCCeEEEEECCCC
Q 004290          270 MHLSEHGRSSLHLTHVTFSPN---------------GEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       270 ~~~~~~g~~~~~i~~v~~spd---------------g~~l~~~s~d~~i~iwd~~~~  311 (763)
                           ++|.. +|-+++|.|.               +.++.+++.|++|++||+.++
T Consensus       274 -----R~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg  324 (406)
T KOG0295|consen  274 -----REHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG  324 (406)
T ss_pred             -----hcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence                 23333 4777777652               358999999999999999884

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.5e-37  Score=300.37  Aligned_cols=199  Identities=24%  Similarity=0.402  Sum_probs=170.8

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      +-+|+.|.|.|+|+.|++|+..|.+.+|+..+ -....+.+.|..+|.++.|+++  +..++||+.+|.|++|+...   
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-fnFEtilQaHDs~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnm---  169 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-FNFETILQAHDSPVRTMKWSHN--GTWMISGDKGGMIKYWQPNM---  169 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCce-eeHHHHhhhhcccceeEEEccC--CCEEEEcCCCceEEecccch---
Confidence            45799999999999999999999999999733 2223344799999999999999  89999999999999999985   


Q ss_pred             CCCCCCCCCCceeeeccc-CceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290          130 RGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (763)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (763)
                              .-++.+.+|. ..|++++|+| +...|+|++.||+|+|||.+..+..                         
T Consensus       170 --------nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee-------------------------  215 (464)
T KOG0284|consen  170 --------NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEE-------------------------  215 (464)
T ss_pred             --------hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchh-------------------------
Confidence                    3356666665 9999999999 5578889999999999999887632                         


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc
Q 004290          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (763)
Q Consensus       209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s  288 (763)
                      ....+|.-.|.+++|+|.. .++|+|+.|..|++||.+++..+.++                    ++|.+ .|..+.|.
T Consensus       216 ~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tl--------------------h~HKn-tVl~~~f~  273 (464)
T KOG0284|consen  216 RVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATL--------------------HGHKN-TVLAVKFN  273 (464)
T ss_pred             heeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhh--------------------hhccc-eEEEEEEc
Confidence            1114678899999999984 69999999999999999999766554                    66777 59999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCC
Q 004290          289 PNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       289 pdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      |++++|++++.|..+++||+++
T Consensus       274 ~n~N~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  274 PNGNWLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             CCCCeeEEccCCceEEEEehhH
Confidence            9999999999999999999986

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.2e-36  Score=301.02  Aligned_cols=250  Identities=14%  Similarity=0.191  Sum_probs=179.1

Q ss_pred             hhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004290           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (763)
Q Consensus        37 ~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~  115 (763)
                      +.+......+.+|...++-..|+|.|.++|||...|+|||||....+ .++.-.+.-.++|..+.|+++  ++.|+..++
T Consensus        46 i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~d--s~RI~avGE  123 (603)
T KOG0318|consen   46 IDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFD--SKRIAAVGE  123 (603)
T ss_pred             CCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCC--CcEEEEEec
Confidence            34445567788999999999999999999999999999999987633 222222444566666666666  344444332


Q ss_pred             C----CcEEEEECCCCCCCCC-------------------------------CCCCCCCceeeecccCceeEEEEecCCC
Q 004290          116 D----AEVRLFNLSRFSGRGL-------------------------------DDNAITPSALYQCHTRRVKKLAVEVGNP  160 (763)
Q Consensus       116 d----g~I~iwd~~~~~~~~~-------------------------------~~~~~~~~~~~~~h~~~v~~l~~sp~~~  160 (763)
                      .    |.+.+||..+.-+...                               .....+...++..|...|+|+.|+| ++
T Consensus       124 Grerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG  202 (603)
T KOG0318|consen  124 GRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DG  202 (603)
T ss_pred             CccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CC
Confidence            1    2345555443222110                               0001233455667999999999999 57


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004290          161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (763)
Q Consensus       161 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i  240 (763)
                      .+|+|++.||+|.+||=.+++..                      ..+....+|.+.|.+++|+|| +..|++++.|.++
T Consensus       203 ~~Fat~gsDgki~iyDGktge~v----------------------g~l~~~~aHkGsIfalsWsPD-s~~~~T~SaDkt~  259 (603)
T KOG0318|consen  203 SRFATAGSDGKIYIYDGKTGEKV----------------------GELEDSDAHKGSIFALSWSPD-STQFLTVSADKTI  259 (603)
T ss_pred             CeEEEecCCccEEEEcCCCccEE----------------------EEecCCCCccccEEEEEECCC-CceEEEecCCceE
Confidence            99999999999999998888632                      234445689999999999998 7899999999999


Q ss_pred             EEEeCCCCCCCcccCCCCC-------------------CCCcccccccccc----cCCCCCccceeEEEEcCCCCEEEEE
Q 004290          241 RLYDRRMLPPLTSCQKRMS-------------------PPPCVNYFCPMHL----SEHGRSSLHLTHVTFSPNGEEVLLS  297 (763)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~----~~~g~~~~~i~~v~~spdg~~l~~~  297 (763)
                      +|||+.+.+.+.++.....                   ....+.++.+.+.    ...||.. .|++++.+|++++|++|
T Consensus       260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~Sg  338 (603)
T KOG0318|consen  260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSG  338 (603)
T ss_pred             EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEee
Confidence            9999999887766643322                   0111222222221    1257877 69999999999999999


Q ss_pred             eCCCeEEEEECCCCCc
Q 004290          298 YSGEHVYLMDVNHAGG  313 (763)
Q Consensus       298 s~d~~i~iwd~~~~~~  313 (763)
                      +.||.|.-|++.++..
T Consensus       339 syDG~I~~W~~~~g~~  354 (603)
T KOG0318|consen  339 SYDGHINSWDSGSGTS  354 (603)
T ss_pred             ccCceEEEEecCCccc
Confidence            9999999999998654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.7e-35  Score=269.50  Aligned_cols=214  Identities=22%  Similarity=0.284  Sum_probs=181.5

Q ss_pred             cccceeeccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCC-----CCeEEEEEccCCCCceEEEEEeeCCCCcEEEEE
Q 004290           40 LSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYS-----SRKLLHSIETGHSANVFCTKFVPETSDELVVSG  113 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~-----~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~  113 (763)
                      +.+..+|++|++.|+.++..+. ...|++++.|.++.+|++.     .|..++.+ .||...|..+..+++  +++.+++
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~d--g~~alS~   81 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSSD--GNFALSA   81 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEccC--CceEEec
Confidence            4566789999999999999886 5789999999999999875     35667778 799999999999999  7999999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004290          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (763)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  193 (763)
                      +.|+++++||+..+          ++.+.|.+|...|.+++|+| +...++||+.|++|++|++.....           
T Consensus        82 swD~~lrlWDl~~g----------~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck-----------  139 (315)
T KOG0279|consen   82 SWDGTLRLWDLATG----------ESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCK-----------  139 (315)
T ss_pred             cccceEEEEEecCC----------cEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEE-----------
Confidence            99999999999974          44788999999999999999 557888999999999999876531           


Q ss_pred             ceEEEecCCCceeeccCCCCCccceEEEEEeCCC-CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccc
Q 004290          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (763)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (763)
                       ..+   ..         ..+...|.|+.|+|.. .-+|++++.|++|++||+++.+....+                  
T Consensus       140 -~t~---~~---------~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~------------------  188 (315)
T KOG0279|consen  140 -YTI---HE---------DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF------------------  188 (315)
T ss_pred             -EEE---ec---------CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc------------------
Confidence             111   11         1226799999999973 458999999999999999987755443                  


Q ss_pred             cCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       273 ~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                        .||.. .++.+++||||..+++|+.||.+.+||++.++
T Consensus       189 --~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k  225 (315)
T KOG0279|consen  189 --IGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK  225 (315)
T ss_pred             --ccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence              45666 59999999999999999999999999999854

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-35  Score=265.38  Aligned_cols=208  Identities=23%  Similarity=0.337  Sum_probs=179.9

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      +..+.|..|+++|+.+.|+-||++.++++.|++|++|+...+.+++++ .+|...|..++.+.+  +..|++|+.|+.|.
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~D--nskf~s~GgDk~v~   84 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSD--NSKFASCGGDKAVQ   84 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeecccccc--ccccccCCCCceEE
Confidence            346778899999999999999999999999999999999999999999 899999999999999  68999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  200 (763)
                      +||++++          +.++.+.+|...|+.++|+. +...+++|+.|.++++||.|+....                 
T Consensus        85 vwDV~TG----------kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~e-----------------  136 (307)
T KOG0316|consen   85 VWDVNTG----------KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFE-----------------  136 (307)
T ss_pred             EEEcccC----------eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCC-----------------
Confidence            9999984          44889999999999999997 6689999999999999999987532                 


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (763)
                            ++.........|.++..+.   ..|++|+.||++|.||+|.++.....                    .|+   
T Consensus       137 ------PiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy--------------------~g~---  184 (307)
T KOG0316|consen  137 ------PIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDY--------------------FGH---  184 (307)
T ss_pred             ------ccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhh--------------------cCC---
Confidence                  2222233456788888875   48999999999999999998643211                    122   


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +|+++.|++|++.+++++-|+++++.|-.++
T Consensus       185 pit~vs~s~d~nc~La~~l~stlrLlDk~tG  215 (307)
T KOG0316|consen  185 PITSVSFSKDGNCSLASSLDSTLRLLDKETG  215 (307)
T ss_pred             cceeEEecCCCCEEEEeeccceeeecccchh
Confidence            6999999999999999999999999987774

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.1e-34  Score=263.01  Aligned_cols=233  Identities=15%  Similarity=0.256  Sum_probs=190.6

Q ss_pred             cCCCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceE
Q 004290           20 TDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVF   97 (763)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~   97 (763)
                      +..+.+.|++|++|+  ..+.++.++++-..+.|+.|...|+++.||.++. ..||+||+.++.  .+.+| .+|+..|+
T Consensus        12 iLvsA~YDhTIRfWq--a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~-e~h~kNVt   87 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQ--ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATF-EGHTKNVT   87 (311)
T ss_pred             EEEeccCcceeeeee--hhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEE-eccCCceE
Confidence            345688999999999  6778899999977889999999999999999887 589999998765  57778 79999999


Q ss_pred             EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004290           98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (763)
Q Consensus        98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~  177 (763)
                      ++.|..+  |+.+++|+.||+++|||++...           .+....|..+|+++..+| +...|++|..+|.|++||+
T Consensus        88 aVgF~~d--grWMyTgseDgt~kIWdlR~~~-----------~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl  153 (311)
T KOG0315|consen   88 AVGFQCD--GRWMYTGSEDGTVKIWDLRSLS-----------CQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDL  153 (311)
T ss_pred             EEEEeec--CeEEEecCCCceEEEEeccCcc-----------cchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEc
Confidence            9999999  8999999999999999999732           233335789999999999 5567779999999999999


Q ss_pred             CCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCC
Q 004290          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  257 (763)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~  257 (763)
                      +.......                        -.|....+|.++...|+ |.+++.+...|..++|++-..+....+.  
T Consensus       154 ~~~~c~~~------------------------liPe~~~~i~sl~v~~d-gsml~a~nnkG~cyvW~l~~~~~~s~l~--  206 (311)
T KOG0315|consen  154 GENSCTHE------------------------LIPEDDTSIQSLTVMPD-GSMLAAANNKGNCYVWRLLNHQTASELE--  206 (311)
T ss_pred             cCCccccc------------------------cCCCCCcceeeEEEcCC-CcEEEEecCCccEEEEEccCCCccccce--
Confidence            98753211                        01223467899999997 7899999999999999998754333221  


Q ss_pred             CCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                                 |.+-. ..|.. .|..+.+|||+++|++++.|.+++||++.+
T Consensus       207 -----------P~~k~-~ah~~-~il~C~lSPd~k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  207 -----------PVHKF-QAHNG-HILRCLLSPDVKYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             -----------Ehhhe-ecccc-eEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence                       11111 33544 699999999999999999999999998877

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.2e-36  Score=314.57  Aligned_cols=196  Identities=19%  Similarity=0.241  Sum_probs=152.5

Q ss_pred             eeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004290           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (763)
Q Consensus        44 ~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd  123 (763)
                      .++..-...++|+.|++|+.+||.|-.|..|++|.+... .++.+ . +      ..+..     .+=+.+.|-.+.+.|
T Consensus       372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~l-k-~------~~~l~-----~~d~~sad~~~~~~D  437 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKL-K-D------ASDLS-----NIDTESADVDVDMLD  437 (707)
T ss_pred             EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccc-c-c------hhhhc-----cccccccchhhhhcc
Confidence            444444567999999999999999999999999998754 33333 1 1      11221     222334444456666


Q ss_pred             CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                      ....          .....+-+|.++|+...|+| +.++|+++++|++|++|.+.+....                    
T Consensus       438 ~~~~----------~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~--------------------  486 (707)
T KOG0263|consen  438 DDSS----------GTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCL--------------------  486 (707)
T ss_pred             ccCC----------ceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeE--------------------
Confidence            5542          22566889999999999999 5689999999999999999987632                    


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  283 (763)
                           ....+|..+|..+.|+|. |.+||+++.|++.++|.....++++.+                    .||-+ .|.
T Consensus       487 -----V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRif--------------------aghls-DV~  539 (707)
T KOG0263|consen  487 -----VIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIF--------------------AGHLS-DVD  539 (707)
T ss_pred             -----EEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCchhhh--------------------ccccc-ccc
Confidence                 223478999999999996 899999999999999999887665544                    45555 499


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       284 ~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      |+.|+|+..|+++||.|.+|++||+.++
T Consensus       540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G  567 (707)
T KOG0263|consen  540 CVSFHPNSNYVATGSSDRTVRLWDVSTG  567 (707)
T ss_pred             eEEECCcccccccCCCCceEEEEEcCCC
Confidence            9999999999999999999999999885

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.4e-34  Score=313.72  Aligned_cols=212  Identities=26%  Similarity=0.421  Sum_probs=180.9

Q ss_pred             ccceeeccc-cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290           41 SQERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (763)
Q Consensus        41 ~~~~~l~gH-~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg  117 (763)
                      .....+.+| ...|.++.|+++|++|++++.|+.+++|+..+.+  .++.+ .+|...|.+++|+|+  +.++++++.|+
T Consensus       149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d--~~~l~s~s~D~  225 (456)
T KOG0266|consen  149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPD--GSYLLSGSDDK  225 (456)
T ss_pred             eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCC--CcEEEEecCCc
Confidence            345556555 7899999999999999999999999999998777  66666 799999999999999  78999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  197 (763)
                      +|+|||+... +        ..++++++|...|++++|+|++ +++++|+.|++|++||+++++.               
T Consensus       226 tiriwd~~~~-~--------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~---------------  280 (456)
T KOG0266|consen  226 TLRIWDLKDD-G--------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC---------------  280 (456)
T ss_pred             eEEEeeccCC-C--------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE---------------
Confidence            9999999432 1        3478999999999999999966 9999999999999999998752               


Q ss_pred             EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC--CcccCCCCCCCCcccccccccccCC
Q 004290          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSEH  275 (763)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  275 (763)
                                +....+|...|++++|+++ +++|++++.|+.|+|||+.++..  +..+                    .
T Consensus       281 ----------~~~l~~hs~~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~--------------------~  329 (456)
T KOG0266|consen  281 ----------VRKLKGHSDGISGLAFSPD-GNLLVSASYDGTIRVWDLETGSKLCLKLL--------------------S  329 (456)
T ss_pred             ----------EEeeeccCCceEEEEECCC-CCEEEEcCCCccEEEEECCCCceeeeecc--------------------c
Confidence                      2233467889999999997 78999999999999999999873  2222                    1


Q ss_pred             CCCcc-ceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          276 GRSSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       276 g~~~~-~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ++... +++.++|+|++.+|++++.|+.+++||+..+
T Consensus       330 ~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  330 GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence            22222 5999999999999999999999999999884

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.4e-33  Score=281.06  Aligned_cols=262  Identities=18%  Similarity=0.282  Sum_probs=194.1

Q ss_pred             ccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--cCCCCceEEEEEe
Q 004290           25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE--TGHSANVFCTKFV  102 (763)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~--~~h~~~V~~v~~~  102 (763)
                      +-|..+.+++  -..+|.-.+++.|...|+|+.|+|||+++||++.||+|.|||=.+|+.+..+.  .+|.+.|+++.|+
T Consensus       167 sdDn~v~ffe--GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs  244 (603)
T KOG0318|consen  167 SDDNTVAFFE--GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS  244 (603)
T ss_pred             cCCCeEEEee--CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC
Confidence            3456666666  34456667889999999999999999999999999999999999999999883  2899999999999


Q ss_pred             eCCCCcEEEEEeCCCcEEEEECCCCCCCC---------------------------------CCCCCCCCceeeecccCc
Q 004290          103 PETSDELVVSGAGDAEVRLFNLSRFSGRG---------------------------------LDDNAITPSALYQCHTRR  149 (763)
Q Consensus       103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~---------------------------------~~~~~~~~~~~~~~h~~~  149 (763)
                      |+  +..|++++.|.+++|||+.+.+...                                 +......++..+.+|...
T Consensus       245 PD--s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~  322 (603)
T KOG0318|consen  245 PD--STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS  322 (603)
T ss_pred             CC--CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc
Confidence            99  6999999999999999998643211                                 011223467788899999


Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE-------------------ec----------
Q 004290          150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL-------------------DL----------  200 (763)
Q Consensus       150 v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------------------~~----------  200 (763)
                      |+++..+| ++.+|++|+.||.|.-||..++.........|......+.                   ++          
T Consensus       323 ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~  401 (603)
T KOG0318|consen  323 ITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEV  401 (603)
T ss_pred             eeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccce
Confidence            99999999 5599999999999999999988765333233321111110                   00          


Q ss_pred             -------------CCC---------ceeeccCC-----CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcc
Q 004290          201 -------------RCG---------AKRSLADP-----PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (763)
Q Consensus       201 -------------~~~---------~~~~~~~~-----~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~  253 (763)
                                   ..+         ....+...     ..-.....+++++|+ ++.+++|+.|+.|+||.+........
T Consensus       402 ~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~-~~~vaVGG~Dgkvhvysl~g~~l~ee  480 (603)
T KOG0318|consen  402 VKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD-GSEVAVGGQDGKVHVYSLSGDELKEE  480 (603)
T ss_pred             eecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC-CCEEEEecccceEEEEEecCCcccce
Confidence                         000         00000000     011223568899997 78999999999999999986543211


Q ss_pred             cCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .                .+  ..|.. +|++|+||||+.||+++...+.+.+||+.+.
T Consensus       481 ~----------------~~--~~h~a-~iT~vaySpd~~yla~~Da~rkvv~yd~~s~  519 (603)
T KOG0318|consen  481 A----------------KL--LEHRA-AITDVAYSPDGAYLAAGDASRKVVLYDVASR  519 (603)
T ss_pred             e----------------ee--ecccC-CceEEEECCCCcEEEEeccCCcEEEEEcccC
Confidence            0                00  12444 6999999999999999999999999999884

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.7e-35  Score=276.68  Aligned_cols=212  Identities=19%  Similarity=0.282  Sum_probs=184.1

Q ss_pred             hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (763)
Q Consensus        38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg  117 (763)
                      -.+++.+.++||.+.|.|+++.|-.++++||+.|++++|||+.+|+...++ .||...|..+++++.  -.+|++++.|+
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~r--HpYlFs~gedk  215 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKR--HPYLFSAGEDK  215 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeeccc--CceEEEecCCC
Confidence            456888999999999999999999999999999999999999999999999 899999999999998  58999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  197 (763)
                      .|+.||++.          .+.++.+.+|-..|+|++.+| .-..|+||+.|.++++||+|+..                
T Consensus       216 ~VKCwDLe~----------nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~----------------  268 (460)
T KOG0285|consen  216 QVKCWDLEY----------NKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRA----------------  268 (460)
T ss_pred             eeEEEechh----------hhhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccc----------------
Confidence            999999996          255888899999999999999 45789999999999999999875                


Q ss_pred             EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004290          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (763)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (763)
                               .+....+|..+|.++.+.|.++ .+++|+.|++|++||++.++...++                    . |
T Consensus       269 ---------~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agkt~~tl--------------------t-~  317 (460)
T KOG0285|consen  269 ---------SVHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGKTMITL--------------------T-H  317 (460)
T ss_pred             ---------eEEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCceeEee--------------------e-c
Confidence                     2344567899999999999865 7999999999999999998755433                    1 2


Q ss_pred             CccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       278 ~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ....|.+++.+|....+++++.| .|+.|++..+
T Consensus       318 hkksvral~lhP~e~~fASas~d-nik~w~~p~g  350 (460)
T KOG0285|consen  318 HKKSVRALCLHPKENLFASASPD-NIKQWKLPEG  350 (460)
T ss_pred             ccceeeEEecCCchhhhhccCCc-cceeccCCcc
Confidence            23359999999998877777766 5777877663

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=7.6e-34  Score=260.91  Aligned_cols=219  Identities=21%  Similarity=0.309  Sum_probs=183.5

Q ss_pred             cccceeeccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCC---CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004290           40 LSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~---~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~  115 (763)
                      +-.++.++||++.|..++|+|- |.+||||+.|+.|+||+...   -.+...+..+|+..|.+++|+|.  |++|++|+.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~--g~~La~aSF   81 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH--GRYLASASF   81 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC--CcEEEEeec
Confidence            5667889999999999999997 89999999999999999884   34566666789999999999999  799999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (763)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  195 (763)
                      |.++.||.-..+.        ++++.++.+|...|.+++|++ ++++|++|+.|+.|-||.+.....        .+|  
T Consensus        82 D~t~~Iw~k~~~e--------fecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddE--------fec--  142 (312)
T KOG0645|consen   82 DATVVIWKKEDGE--------FECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDE--------FEC--  142 (312)
T ss_pred             cceEEEeecCCCc--------eeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCc--------EEE--
Confidence            9999999877543        466899999999999999999 779999999999999999875431        222  


Q ss_pred             EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (763)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (763)
                                  +...+.|+..|..+.|+|. ..+|++++.|++|++|+-.....-          .|++.+       .
T Consensus       143 ------------~aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~dddW----------~c~~tl-------~  192 (312)
T KOG0645|consen  143 ------------IAVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDDW----------ECVQTL-------D  192 (312)
T ss_pred             ------------EeeeccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCCe----------eEEEEe-------c
Confidence                        3334568889999999997 579999999999999987632211          233332       5


Q ss_pred             CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       276 g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      ||.+ .|.+++|+|.|..|++++.|++|+||...+
T Consensus       193 g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~  226 (312)
T KOG0645|consen  193 GHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT  226 (312)
T ss_pred             Cccc-eEEEEEecCCCceEEEecCCcceEeeeecc
Confidence            5666 599999999999999999999999997554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.1e-35  Score=281.18  Aligned_cols=195  Identities=17%  Similarity=0.324  Sum_probs=165.9

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~  128 (763)
                      ....|.|+.+.  ...+++|..|.+|+|||..+..+++.+ .||++.|.|+.|.    .+.|++|+.|.+|++||++++ 
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tg-  267 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTG-  267 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeecc----ceEEEecCCCceEEEEeccCC-
Confidence            45679999974  567999999999999999999999888 8999999999997    469999999999999999983 


Q ss_pred             CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (763)
                               +++.++.+|...|..+.|+.   .+++|++.|.+|.+||+.....+                      ...
T Consensus       268 ---------e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i----------------------t~r  313 (499)
T KOG0281|consen  268 ---------EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI----------------------TLR  313 (499)
T ss_pred             ---------chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH----------------------HHH
Confidence                     56889999999999999974   58999999999999999886521                      112


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc
Q 004290          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (763)
Q Consensus       209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s  288 (763)
                      ....+|...|+.+.|+.   +++++++.|.+|++|++.+++.+.++                    +||.. .|-|+.+ 
T Consensus       314 rVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl--------------------~gHkR-GIAClQY-  368 (499)
T KOG0281|consen  314 RVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTL--------------------NGHKR-GIACLQY-  368 (499)
T ss_pred             HHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhh--------------------hcccc-cceehhc-
Confidence            22346888999999975   59999999999999999998665544                    66766 3877766 


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCC
Q 004290          289 PNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       289 pdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                       .|+++++|+.|.+|++||+..|
T Consensus       369 -r~rlvVSGSSDntIRlwdi~~G  390 (499)
T KOG0281|consen  369 -RDRLVVSGSSDNTIRLWDIECG  390 (499)
T ss_pred             -cCeEEEecCCCceEEEEecccc
Confidence             6899999999999999999885

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.1e-34  Score=295.38  Aligned_cols=234  Identities=18%  Similarity=0.236  Sum_probs=188.1

Q ss_pred             ccccccchhhhhccccceeeccccCceEEEEe-CCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC
Q 004290           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISW-NSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (763)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~f-sp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~  105 (763)
                      +..+.+++  ...+++.+.+-|..+.|..++| .|+..+||.++..+.+|++++.+..+.  +..||+..|.++..... 
T Consensus       302 eQnl~l~d--~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~--ii~GH~e~vlSL~~~~~-  376 (775)
T KOG0319|consen  302 EQNLFLYD--EDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ--IIPGHTEAVLSLDVWSS-  376 (775)
T ss_pred             cceEEEEE--ccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE--EEeCchhheeeeeeccc-
Confidence            34455553  5677788888899999999998 567899999999999999999888776  44899999999995444 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004290          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (763)
Q Consensus       106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~  185 (763)
                       |.+|+||+.|.++++|.++.....      ..++....+|.+.|.+++++..+..+|+++|.|+++++|++...+....
T Consensus       377 -g~llat~sKD~svilWr~~~~~~~------~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~  449 (775)
T KOG0319|consen  377 -GDLLATGSKDKSVILWRLNNNCSK------SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF  449 (775)
T ss_pred             -CcEEEEecCCceEEEEEecCCcch------hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence             689999999999999999543222      2456777899999999999887888999999999999999988442200


Q ss_pred             CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccc
Q 004290          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (763)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  265 (763)
                              ...+        ........|...|++++++|+ .++|||||.|.+.+||++..+..+.++           
T Consensus       450 --------~~~~--------~~~~t~~aHdKdIN~Vaia~n-dkLiAT~SqDktaKiW~le~~~l~~vL-----------  501 (775)
T KOG0319|consen  450 --------PIVL--------TCRYTERAHDKDINCVAIAPN-DKLIATGSQDKTAKIWDLEQLRLLGVL-----------  501 (775)
T ss_pred             --------ccee--------hhhHHHHhhcccccceEecCC-CceEEecccccceeeecccCceEEEEe-----------
Confidence                    0010        011122457889999999997 589999999999999999966544433           


Q ss_pred             ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       266 ~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                               .||.. .|.+|.|+|..+.|+++|.|.+|+||.+.+
T Consensus       502 ---------sGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~  536 (775)
T KOG0319|consen  502 ---------SGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSIST  536 (775)
T ss_pred             ---------eCCcc-ceEEEEeccccceeEeccCCceEEEEEecc
Confidence                     56777 499999999999999999999999999887

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-34  Score=299.55  Aligned_cols=434  Identities=19%  Similarity=0.232  Sum_probs=314.4

Q ss_pred             cccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC
Q 004290           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (763)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~  105 (763)
                      .+..+++|+...+  ....+|.||+..|+++.|...|..|||||.|+.|.+||+-...-+..+ .||...|+.+-|... 
T Consensus        85 aDGsVqif~~~s~--~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~~-  160 (888)
T KOG0306|consen   85 ADGSVQIFSLESE--EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLNG-  160 (888)
T ss_pred             cCceEEeeccCCC--ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccCC-
Confidence            4678899984433  778889999999999999999999999999999999999887778888 899999999999986 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC----
Q 004290          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS----  181 (763)
Q Consensus       106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~----  181 (763)
                       .+++++.+.|+.|++||+.+.          .+..+.-.|.+.|..+++.+   ..+++++.|+.+++|++....    
T Consensus       161 -~~~lvS~sKDs~iK~WdL~tq----------hCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~  226 (888)
T KOG0306|consen  161 -DSFLVSVSKDSMIKFWDLETQ----------HCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKE  226 (888)
T ss_pred             -CeEEEEeccCceEEEEecccc----------eeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeeccccccc
Confidence             589999999999999999973          45777888999999999976   688899999999999992100    


Q ss_pred             --------------------CC---------------------------------------------CC-----------
Q 004290          182 --------------------SC---------------------------------------------PP-----------  185 (763)
Q Consensus       182 --------------------~~---------------------------------------------~~-----------  185 (763)
                                          ..                                             ..           
T Consensus       227 ~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~s  306 (888)
T KOG0306|consen  227 TNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKS  306 (888)
T ss_pred             ccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhh
Confidence                                00                                             00           


Q ss_pred             ----------------------CCCCCcc--------cceEEEecCC-Cc------eeeccCCCCCccceEEEEEeCCCC
Q 004290          186 ----------------------AGSSHQE--------CRNILLDLRC-GA------KRSLADPPKQTLSLKSCDISSTRP  228 (763)
Q Consensus       186 ----------------------~~~~~~~--------~~~~~~~~~~-~~------~~~~~~~~~~~~~v~~i~~~p~~~  228 (763)
                                            ...+...        ....++.+.. ..      ...-....+|...|.+++++.+  
T Consensus       307 l~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d--  384 (888)
T KOG0306|consen  307 LSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD--  384 (888)
T ss_pred             HHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC--
Confidence                                  0000000        0011111111 00      0011234678899999999996  


Q ss_pred             cEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004290          229 HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (763)
Q Consensus       229 ~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~  308 (763)
                      +.++..+..+.|+||+..+++.+.++.                      .. .+.+..|.|.++++++|...|.+.+||+
T Consensus       385 ~~~~~Sga~~SikiWn~~t~kciRTi~----------------------~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl  441 (888)
T KOG0306|consen  385 SILLASGAGESIKIWNRDTLKCIRTIT----------------------CG-YILASKFVPGDRYIVLGTKNGELQVFDL  441 (888)
T ss_pred             ceeeeecCCCcEEEEEccCcceeEEec----------------------cc-cEEEEEecCCCceEEEeccCCceEEEEe
Confidence            355555567899999999987665542                      11 4889999999999999999999999999


Q ss_pred             CCCCccceEeecCCCCeeeeeccCCCCcccCCCCCcccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHHhH
Q 004290          309 NHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACN  388 (763)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  388 (763)
                      .+.........|...++.++.+|++.+....+...                                             
T Consensus       442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk---------------------------------------------  476 (888)
T KOG0306|consen  442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK---------------------------------------------  476 (888)
T ss_pred             ehhhhhhhhhccccceeeeeecCCCCceEEecCCc---------------------------------------------
Confidence            99876667778888999999998866543332211                                             


Q ss_pred             HHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHh
Q 004290          389 EVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQ  468 (763)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  468 (763)
                                                ..+-|+.                                               
T Consensus       477 --------------------------tVkfWdf-----------------------------------------------  483 (888)
T KOG0306|consen  477 --------------------------TVKFWDF-----------------------------------------------  483 (888)
T ss_pred             --------------------------EEEEEeE-----------------------------------------------
Confidence                                      0111221                                               


Q ss_pred             ccCCCChhhHHHHHHHHHHHHHHHhhcccCCCCCCC-CCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhhh
Q 004290          469 CLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGA-RSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEV  547 (763)
Q Consensus       469 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  547 (763)
                                             .....  .++.++ ....+..+++.+.+.++--+    .|+|+              
T Consensus       484 -----------------------~l~~~--~~gt~~k~lsl~~~rtLel~ddvL~v~----~Spdg--------------  520 (888)
T KOG0306|consen  484 -----------------------KLVVS--VPGTQKKVLSLKHTRTLELEDDVLCVS----VSPDG--------------  520 (888)
T ss_pred             -----------------------EEEec--cCcccceeeeeccceEEeccccEEEEE----EcCCC--------------
Confidence                                   00000  000000 01112222333322111000    00000              


Q ss_pred             hccccCCCCCCCCcccccccccCCcceeeeccCCCccccccCCCCCCCCCCCCCCCCCCCCcccccccceEEeeeccccc
Q 004290          548 EVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGT  627 (763)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~  627 (763)
                                                                    ..-.++.-+..+.+.-..+.+..-.+.||..++.
T Consensus       521 ----------------------------------------------k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~  554 (888)
T KOG0306|consen  521 ----------------------------------------------KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVL  554 (888)
T ss_pred             ----------------------------------------------cEEEEEeccCeEEEEEecceeeeeeeccccccee
Confidence                                                          0000112334444555667778888999999999


Q ss_pred             ceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCcccc
Q 004290          628 DIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVS  707 (763)
Q Consensus       628 ~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~  707 (763)
                      |+.    +|||++.|+|||.|++|+||-++-|.|-+.|.||.+.|++|+|-|...++.|+|.|+.||-||-..-+.+..+
T Consensus       555 smD----IS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L  630 (888)
T KOG0306|consen  555 SMD----ISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL  630 (888)
T ss_pred             EEe----ccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee
Confidence            999    9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 004290          708 GGAAGP  713 (763)
Q Consensus       708 ~g~~~~  713 (763)
                      .||...
T Consensus       631 ~~H~~e  636 (888)
T KOG0306|consen  631 DGHHSE  636 (888)
T ss_pred             ccchhe
Confidence            888765

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5.4e-33  Score=265.54  Aligned_cols=212  Identities=17%  Similarity=0.262  Sum_probs=179.9

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      .-+..|.+|++.|.+++.+|+.+++|||+.|....||++.++.....+ .+|+..|+++.|+.+  +.+||||..+|.|+
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fshd--gtlLATGdmsG~v~  131 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSHD--GTLLATGDMSGKVL  131 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEccC--ceEEEecCCCccEE
Confidence            456789999999999999999999999999999999999999988888 899999999999999  89999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  200 (763)
                      ||...++..          ...+..--..|-=|.|+| -+.+|+.|+.||.+.+|.+.+...+                 
T Consensus       132 v~~~stg~~----------~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~-----------------  183 (399)
T KOG0296|consen  132 VFKVSTGGE----------QWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALC-----------------  183 (399)
T ss_pred             EEEcccCce----------EEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCccee-----------------
Confidence            999998542          334444456677789999 6789999999999999999875321                 


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (763)
                              ..+.+|..++++-.|.|+ |+.++++..||+|++||+.+++++..+..                    ....
T Consensus       184 --------kv~~Gh~~~ct~G~f~pd-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~--------------------~e~~  234 (399)
T KOG0296|consen  184 --------KVMSGHNSPCTCGEFIPD-GKRILTGYDDGTIIVWNPKTGQPLHKITQ--------------------AEGL  234 (399)
T ss_pred             --------eEecCCCCCcccccccCC-CceEEEEecCceEEEEecCCCceeEEecc--------------------cccC
Confidence                    223467889999999998 89999999999999999999987654421                    1122


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      ..+++.+...+..++.|+.++.+++-+..+++
T Consensus       235 ~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK  266 (399)
T KOG0296|consen  235 ELPCISLNLAGSTLTKGNSEGVACGVNNGSGK  266 (399)
T ss_pred             cCCccccccccceeEeccCCccEEEEccccce
Confidence            46778888999999999999999999888865

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-32  Score=256.63  Aligned_cols=216  Identities=22%  Similarity=0.351  Sum_probs=173.5

Q ss_pred             hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC--
Q 004290           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--  115 (763)
Q Consensus        38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~--  115 (763)
                      +++++.+.|+.-.+.|++|.|+++|.+|++++.|.+++|||..+++.++++ ..+...|..++|...  ...++.++.  
T Consensus         2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~--~~~~i~sStk~   78 (311)
T KOG1446|consen    2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHH--SNTVIHSSTKE   78 (311)
T ss_pred             cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecC--CceEEEccCCC
Confidence            456778888888899999999999999999999999999999999999999 567778899999877  456666665  


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (763)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  195 (763)
                      |.+|+..++..          .+.++.|.||...|++|+.+|.+ ..|++++.|++|++||+|..++.           .
T Consensus        79 d~tIryLsl~d----------NkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cq-----------g  136 (311)
T KOG1446|consen   79 DDTIRYLSLHD----------NKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQ-----------G  136 (311)
T ss_pred             CCceEEEEeec----------CceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCc-----------e
Confidence            89999999987          35699999999999999999954 88899999999999999977633           1


Q ss_pred             EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (763)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (763)
                      .+.                ...-..++|+|+ |-++|++.....|++||+|+...           .+...|....    
T Consensus       137 ~l~----------------~~~~pi~AfDp~-GLifA~~~~~~~IkLyD~Rs~dk-----------gPF~tf~i~~----  184 (311)
T KOG1446|consen  137 LLN----------------LSGRPIAAFDPE-GLIFALANGSELIKLYDLRSFDK-----------GPFTTFSITD----  184 (311)
T ss_pred             EEe----------------cCCCcceeECCC-CcEEEEecCCCeEEEEEecccCC-----------CCceeEccCC----
Confidence            111                112346799997 78889988888999999997532           1111221110    


Q ss_pred             CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       276 g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                       .....++.|.|||||++|+.++..+.+++.|.-+|
T Consensus       185 -~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G  219 (311)
T KOG1446|consen  185 -NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG  219 (311)
T ss_pred             -CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence             11225999999999999999999999999988774

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.3e-32  Score=281.39  Aligned_cols=207  Identities=27%  Similarity=0.417  Sum_probs=173.3

Q ss_pred             ceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004290           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (763)
Q Consensus        43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw  122 (763)
                      +++|++|.++|++++|+|++++|++++.|+.|++|++.+++....+ ..|...+..+.|+|+  +++|++++.|+.|++|
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~   78 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASAD--GTYLASGSSDKTIRLW   78 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECCC--CCEEEEEcCCCeEEEE
Confidence            4567899999999999999999999999999999999988877777 689999999999999  6899999999999999


Q ss_pred             ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (763)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (763)
                      |+...          .....+..|...|.++.|+|+ +.++++++.|+.|++||+++.+..                   
T Consensus        79 ~~~~~----------~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~-------------------  128 (289)
T cd00200          79 DLETG----------ECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCL-------------------  128 (289)
T ss_pred             EcCcc----------cceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEE-------------------
Confidence            99863          236677789889999999994 678888888999999999865421                   


Q ss_pred             CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccce
Q 004290          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (763)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i  282 (763)
                            .....+...+.+++|+|+ +.++++++.|+.|++||+++++.+..+                    ..+.. .|
T Consensus       129 ------~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~--------------------~~~~~-~i  180 (289)
T cd00200         129 ------TTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATL--------------------TGHTG-EV  180 (289)
T ss_pred             ------EEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccccccceeE--------------------ecCcc-cc
Confidence                  111245667999999997 678888888999999999876544322                    12332 59


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          283 THVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       283 ~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      ++++|+|+++.|++++.|+.|++||+..
T Consensus       181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~  208 (289)
T cd00200         181 NSVAFSPDGEKLLSSSSDGTIKLWDLST  208 (289)
T ss_pred             ceEEECCCcCEEEEecCCCcEEEEECCC
Confidence            9999999999999999999999999876

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8e-33  Score=272.40  Aligned_cols=228  Identities=17%  Similarity=0.230  Sum_probs=180.4

Q ss_pred             eeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCC--eEE------EEEc-----cCCCCceEEEEEeeCCCCcE
Q 004290           44 RELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSR--KLL------HSIE-----TGHSANVFCTKFVPETSDEL  109 (763)
Q Consensus        44 ~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~--~~~------~~~~-----~~h~~~V~~v~~~p~~~~~~  109 (763)
                      +.++ |+.+|.+.+|+|-.. +|++|+.|-+.++|++...  ...      +.+.     ......|++++|+.+  |.+
T Consensus       173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~--G~~  249 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND--GTL  249 (524)
T ss_pred             eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC--CCe
Confidence            4455 999999999999665 9999999999999998741  111      0010     122367999999999  899


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004290          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (763)
Q Consensus       110 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  189 (763)
                      ||+|+.||.++||+...           ..+.++..|+++|.+|.|+. .+.+|++++.|+++.+||..+++..+     
T Consensus       250 LatG~~~G~~riw~~~G-----------~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q-----  312 (524)
T KOG0273|consen  250 LATGSEDGEARIWNKDG-----------NLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQ-----  312 (524)
T ss_pred             EEEeecCcEEEEEecCc-----------hhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEE-----
Confidence            99999999999999984           44788999999999999998 67899999999999999998876321     


Q ss_pred             CcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccc
Q 004290          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (763)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  269 (763)
                             ..             .-|..+-..+.|-.+  .-|++++.|+.|+++.+....++.++               
T Consensus       313 -------~f-------------~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~---------------  355 (524)
T KOG0273|consen  313 -------QF-------------EFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTF---------------  355 (524)
T ss_pred             -------ee-------------eeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceee---------------
Confidence                   01             112233356777764  58999999999999999876554443               


Q ss_pred             ccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCC
Q 004290          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN  334 (763)
Q Consensus       270 ~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~  334 (763)
                           .||.+ .|.++.|.|.|..|++++.|++++||.............+...+..+.|+|...
T Consensus       356 -----~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~  414 (524)
T KOG0273|consen  356 -----IGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP  414 (524)
T ss_pred             -----ecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC
Confidence                 55666 699999999999999999999999999888776666677777777788888643

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.8e-33  Score=258.22  Aligned_cols=227  Identities=19%  Similarity=0.331  Sum_probs=192.7

Q ss_pred             cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC------eEEEEEccCCCCceE
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR------KLLHSIETGHSANVF   97 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~------~~~~~~~~~h~~~V~   97 (763)
                      .+-+.++-+|+.+.........|  -...|..++|+|.|+++|+|+.|+...||++.+.      ...+.+ .+|++.+.
T Consensus        73 aSqDGklIvWDs~TtnK~haipl--~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l-~gHtgylS  149 (343)
T KOG0286|consen   73 ASQDGKLIVWDSFTTNKVHAIPL--PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL-AGHTGYLS  149 (343)
T ss_pred             eccCCeEEEEEcccccceeEEec--CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeee-cCccceeE
Confidence            45678889999777664444444  4789999999999999999999999999999855      233445 89999999


Q ss_pred             EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004290           98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (763)
Q Consensus        98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~  177 (763)
                      |+.|.++   ..|+|++.|.++.+||++++          ..+..|.+|.+.|.+|.++|.+++.|++|+-|++.++||+
T Consensus       150 cC~f~dD---~~ilT~SGD~TCalWDie~g----------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~  216 (343)
T KOG0286|consen  150 CCRFLDD---NHILTGSGDMTCALWDIETG----------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV  216 (343)
T ss_pred             EEEEcCC---CceEecCCCceEEEEEcccc----------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence            9999987   68999999999999999984          3478899999999999999988899999999999999999


Q ss_pred             CCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCC
Q 004290          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  257 (763)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~  257 (763)
                      |.+.                         ....+++|...|+++.|.|+ |.-|++|+.|+++|+||+|..+.+..+..+
T Consensus       217 R~~~-------------------------c~qtF~ghesDINsv~ffP~-G~afatGSDD~tcRlyDlRaD~~~a~ys~~  270 (343)
T KOG0286|consen  217 RSGQ-------------------------CVQTFEGHESDINSVRFFPS-GDAFATGSDDATCRLYDLRADQELAVYSHD  270 (343)
T ss_pred             cCcc-------------------------eeEeecccccccceEEEccC-CCeeeecCCCceeEEEeecCCcEEeeeccC
Confidence            9985                         24456688999999999997 789999999999999999987765544311


Q ss_pred             CCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                                         ....+|++|+||..|++|++|+.|.++.+||.-.+
T Consensus       271 -------------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~  305 (343)
T KOG0286|consen  271 -------------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG  305 (343)
T ss_pred             -------------------cccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence                               11226999999999999999999999999997663

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.2e-32  Score=316.32  Aligned_cols=204  Identities=18%  Similarity=0.266  Sum_probs=163.7

Q ss_pred             eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC----e----EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----K----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (763)
Q Consensus        46 l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~----~----~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg  117 (763)
                      +.+|.+.|.+++|+|+|++||+|+.|+.|+|||+.+.    .    ....+  .+...|.+++|+|.. +.+|++++.||
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~-~~~las~~~Dg  555 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYI-KSQVASSNFEG  555 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCC-CCEEEEEeCCC
Confidence            4569999999999999999999999999999997542    1    12233  345689999999864 68999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  197 (763)
                      +|++||+.+.          ..+..+.+|.+.|++++|+|.++.+|+||+.||+|++||++++...           ..+
T Consensus       556 ~v~lWd~~~~----------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~-----------~~~  614 (793)
T PLN00181        556 VVQVWDVARS----------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI-----------GTI  614 (793)
T ss_pred             eEEEEECCCC----------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE-----------EEE
Confidence            9999999863          3467788999999999999867789999999999999999876521           111


Q ss_pred             EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC-CcccCCCCCCCCcccccccccccCCC
Q 004290          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHG  276 (763)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (763)
                                    . +...+.++.|++.++.+|++|+.|+.|++||+++... +..+                    .+
T Consensus       615 --------------~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~--------------------~~  659 (793)
T PLN00181        615 --------------K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM--------------------IG  659 (793)
T ss_pred             --------------e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe--------------------cC
Confidence                          0 1235889999776689999999999999999986531 1111                    34


Q ss_pred             CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      |.. .|+++.|. ++.+|++++.|+.|++||+..
T Consensus       660 h~~-~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        660 HSK-TVSYVRFV-DSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             CCC-CEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence            554 59999997 778999999999999999876

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.8e-32  Score=261.73  Aligned_cols=229  Identities=18%  Similarity=0.238  Sum_probs=172.8

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeC-CCCcEEEEEeCCCcEEEEECCC
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVSGAGDAEVRLFNLSR  126 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~-~~~~~l~s~s~dg~I~iwd~~~  126 (763)
                      .|.+.|.++...  ++.++||++||.++|||.. |+++..+ .+|.++|.+++|.-. .....|++++.|.++++|-.+.
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence            388999998877  7899999999999999975 7788888 799999998888654 2134699999999999999987


Q ss_pred             CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (763)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (763)
                      +...      ...+....||...|-++...+ ++..|++|+.|.+|++|+......-.............-.....+...
T Consensus       179 ~~~~------~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~  251 (423)
T KOG0313|consen  179 GENK------VKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT  251 (423)
T ss_pred             chhh------hhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence            5432      234455569999999999998 678999999999999999333221100000000000011111122233


Q ss_pred             eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004290          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (763)
Q Consensus       207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~  286 (763)
                      ++....+|..+|.++.|++  ...+++++.|.+|+.||+.++....++                      ..+..++++.
T Consensus       252 P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~----------------------~~~ksl~~i~  307 (423)
T KOG0313|consen  252 PLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTL----------------------TTNKSLNCIS  307 (423)
T ss_pred             ceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeee----------------------ecCcceeEee
Confidence            5566678999999999998  469999999999999999998755433                      1122599999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          287 FSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       287 ~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ++|...+|++|+.|..|++||.+++
T Consensus       308 ~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  308 YSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             cccccceeeecCCCCceeecCCCCC
Confidence            9999999999999999999999884

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-32  Score=249.75  Aligned_cols=228  Identities=19%  Similarity=0.251  Sum_probs=188.5

Q ss_pred             CCCcccccccccchhh---hhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceE
Q 004290           21 DTRPDVNHSLQMHSSL---VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF   97 (763)
Q Consensus        21 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~   97 (763)
                      ..+...++.+-.|+..   .+...+++.|+||...|+.+..++||++.++++.|+++++||+.+++..+.| .+|...|.
T Consensus        31 l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVl  109 (315)
T KOG0279|consen   31 LVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVL  109 (315)
T ss_pred             EEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-EecCCceE
Confidence            3344556666666533   3445678999999999999999999999999999999999999999999888 89999999


Q ss_pred             EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecc--cCceeEEEEecCC-CCEEEEEeCCCcEEE
Q 004290           98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH--TRRVKKLAVEVGN-PHVVWSASEDGTLRQ  174 (763)
Q Consensus        98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~-~~~l~s~s~dg~i~i  174 (763)
                      +++|+|+  .+++++|+.|++|++|+.-.           .+..++..+  .+.|.|+.|+|.. .-+|++++.|++|++
T Consensus       110 sva~s~d--n~qivSGSrDkTiklwnt~g-----------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKv  176 (315)
T KOG0279|consen  110 SVAFSTD--NRQIVSGSRDKTIKLWNTLG-----------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKV  176 (315)
T ss_pred             EEEecCC--CceeecCCCcceeeeeeecc-----------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEE
Confidence            9999999  69999999999999999984           224444333  7899999999963 468999999999999


Q ss_pred             EECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCccc
Q 004290          175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (763)
Q Consensus       175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~  254 (763)
                      ||+++.+.                         ...+.+|...++.++++|| |.++++|+.||.+.+||++.++.+.++
T Consensus       177 Wnl~~~~l-------------------------~~~~~gh~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~lysl  230 (315)
T KOG0279|consen  177 WNLRNCQL-------------------------RTTFIGHSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNLYSL  230 (315)
T ss_pred             EccCCcch-------------------------hhccccccccEEEEEECCC-CCEEecCCCCceEEEEEccCCceeEec
Confidence            99998763                         2344578899999999998 789999999999999999988765443


Q ss_pred             CCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .                     +.. .|.+++|+|+..+|+.+ .+..|+|||+.++
T Consensus       231 ~---------------------a~~-~v~sl~fspnrywL~~a-t~~sIkIwdl~~~  264 (315)
T KOG0279|consen  231 E---------------------AFD-IVNSLCFSPNRYWLCAA-TATSIKIWDLESK  264 (315)
T ss_pred             c---------------------CCC-eEeeEEecCCceeEeec-cCCceEEEeccch
Confidence            1                     333 59999999997655554 4556999999985

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-32  Score=249.91  Aligned_cols=206  Identities=17%  Similarity=0.233  Sum_probs=175.0

Q ss_pred             ceeeccccCceEEEEeCC---CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           43 ERELEGHQGCVNAISWNS---KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        43 ~~~l~gH~~~V~~l~fsp---~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      -.+..||+.+|-.++|||   +|-+|++++.|+.=.+-+-++|.-+.+| .+|.+.|++...+.+  ...-++++.|-+-
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~n--a~~aasaaadfta   83 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKN--ATRAASAAADFTA   83 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCch--hhhhhhhcccchh
Confidence            356789999999999986   8999999999999999999999999999 799999999999988  6888999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      ++||.-++.          .+..|. |+..|..++|+. +.++|+||+.++.++|||+...+..                
T Consensus        84 kvw~a~tgd----------elhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~Ap----------------  135 (334)
T KOG0278|consen   84 KVWDAVTGD----------ELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAP----------------  135 (334)
T ss_pred             hhhhhhhhh----------hhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCC----------------
Confidence            999998754          266665 899999999998 6688899999999999999987643                


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                              .....+|...|..+-|... .+.|++++.|++||+||.+++..+.++..                      .
T Consensus       136 --------p~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~----------------------~  184 (334)
T KOG0278|consen  136 --------PKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEF----------------------N  184 (334)
T ss_pred             --------chhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEec----------------------C
Confidence                    2233467888999999986 47899999999999999999987655421                      1


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .+|+++.++++|++| +....+.|.+||..+.
T Consensus       185 s~VtSlEvs~dG~il-Tia~gssV~Fwdaksf  215 (334)
T KOG0278|consen  185 SPVTSLEVSQDGRIL-TIAYGSSVKFWDAKSF  215 (334)
T ss_pred             CCCcceeeccCCCEE-EEecCceeEEeccccc
Confidence            159999999999965 5555678999998884

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-31  Score=276.77  Aligned_cols=215  Identities=20%  Similarity=0.322  Sum_probs=173.0

Q ss_pred             eeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004290           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (763)
Q Consensus        44 ~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd  123 (763)
                      .++.||...|.+++||.+...++||+. +.++||+..+.++++++.   .+.+.+..|.|.  ++++++|...|.+.+||
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~---~~y~l~~~Fvpg--d~~Iv~G~k~Gel~vfd  440 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTIT---CGYILASKFVPG--DRYIVLGTKNGELQVFD  440 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEec---cccEEEEEecCC--CceEEEeccCCceEEEE
Confidence            457799999999999999998988876 599999999999999993   238899999999  79999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                      +...          ..+....+|.+.|.+|+.+| ++..++|||.|.+|++||..-....       ...+..+..+...
T Consensus       441 laS~----------~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~-------~gt~~k~lsl~~~  502 (888)
T KOG0306|consen  441 LASA----------SLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSV-------PGTQKKVLSLKHT  502 (888)
T ss_pred             eehh----------hhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEecc-------Ccccceeeeeccc
Confidence            9873          33667789999999999999 5678889999999999997643211       0011111111111


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  283 (763)
                      ..      -.-...|.|+.++|+ +.+|+++--|++|+||-+.+.+..-                    ..+||.- ||.
T Consensus       503 rt------Lel~ddvL~v~~Spd-gk~LaVsLLdnTVkVyflDtlKFfl--------------------sLYGHkL-PV~  554 (888)
T KOG0306|consen  503 RT------LELEDDVLCVSVSPD-GKLLAVSLLDNTVKVYFLDTLKFFL--------------------SLYGHKL-PVL  554 (888)
T ss_pred             eE------EeccccEEEEEEcCC-CcEEEEEeccCeEEEEEecceeeee--------------------eeccccc-cee
Confidence            11      112457899999997 7999999999999999999875432                    2277877 799


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          284 HVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       284 ~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      ++.+|||++++++|+.|.+|++|-++-
T Consensus       555 smDIS~DSklivTgSADKnVKiWGLdF  581 (888)
T KOG0306|consen  555 SMDISPDSKLIVTGSADKNVKIWGLDF  581 (888)
T ss_pred             EEeccCCcCeEEeccCCCceEEecccc
Confidence            999999999999999999999996654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9e-32  Score=273.03  Aligned_cols=212  Identities=14%  Similarity=0.292  Sum_probs=184.3

Q ss_pred             cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      ++..++|..|...|.++.|+|....++.+-.+|.|.|||.++...++.| .-..-+|.+..|.+.  .+.+++|+.|..|
T Consensus         3 l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfiaR--knWiv~GsDD~~I   79 (794)
T KOG0276|consen    3 LDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIAR--KNWIVTGSDDMQI   79 (794)
T ss_pred             chhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeeec--cceEEEecCCceE
Confidence            3445566779999999999999999999999999999999999999999 667789999999998  6999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      +||+.++.          +.+..|.+|.+.|++|+.+|..+ +++|+|.|-+|++||....=.                 
T Consensus        80 rVfnynt~----------ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa-----------------  131 (794)
T KOG0276|consen   80 RVFNYNTG----------EKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWA-----------------  131 (794)
T ss_pred             EEEecccc----------eeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCcee-----------------
Confidence            99999983          45899999999999999999664 677999999999999887532                 


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                             ....+.+|.-.|++++|+|.+.+.||+++-|++|++|.+....+..++                    .||..
T Consensus       132 -------~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl--------------------~gHek  184 (794)
T KOG0276|consen  132 -------CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL--------------------EGHEK  184 (794)
T ss_pred             -------eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee--------------------ecccc
Confidence                   233456788899999999999999999999999999999876544433                    56766


Q ss_pred             cceeEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 004290          280 LHLTHVTFSPN--GEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       280 ~~i~~v~~spd--g~~l~~~s~d~~i~iwd~~~  310 (763)
                       .|++|.|-+-  ..+|++|+.|.+|++||..+
T Consensus       185 -GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt  216 (794)
T KOG0276|consen  185 -GVNCVDYYTGGDKPYLISGADDLTIKVWDYQT  216 (794)
T ss_pred             -CcceEEeccCCCcceEEecCCCceEEEeecch
Confidence             4999999874  47999999999999999988

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-30  Score=270.45  Aligned_cols=256  Identities=15%  Similarity=0.182  Sum_probs=188.5

Q ss_pred             cccccchhh------hhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEccCCCCceEEE
Q 004290           28 HSLQMHSSL------VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCT   99 (763)
Q Consensus        28 ~~~~~~~~~------~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~--~~~~~~~h~~~V~~v   99 (763)
                      +-+++|..-      ...+.+.+++.||-+.|.++.|+.|.++|++|+.|.+++||+++..+.  .+.+ .+|...|-++
T Consensus       117 n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l-~gHkd~Vvac  195 (893)
T KOG0291|consen  117 NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYAL-NGHKDYVVAC  195 (893)
T ss_pred             ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEec-cCCCcceEEE
Confidence            455565531      233456678899999999999999999999999999999999987654  4555 7999999999


Q ss_pred             EEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCC---------------CCC--CCC-------ceeeecccCceeEEEE
Q 004290          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD---------------DNA--ITP-------SALYQCHTRRVKKLAV  155 (763)
Q Consensus       100 ~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~---------------~~~--~~~-------~~~~~~h~~~v~~l~~  155 (763)
                      -|..+  ...+++.+.||.+.+|...........               ..+  ...       ..-+......|++.+|
T Consensus       196 fF~~~--~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f  273 (893)
T KOG0291|consen  196 FFGAN--SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF  273 (893)
T ss_pred             EeccC--cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeec
Confidence            99998  578999999999999998832111100               000  000       0111222367999999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc--------------------cceEEEecCCCceeeccCCCCCc
Q 004290          156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE--------------------CRNILLDLRCGAKRSLADPPKQT  215 (763)
Q Consensus       156 sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~  215 (763)
                      ++ +.++++++-..|...+|.+.....+....-+...                    .+..+|.....  ..+...++|.
T Consensus       274 H~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--sYVlKQQgH~  350 (893)
T KOG0291|consen  274 HK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--SYVLKQQGHS  350 (893)
T ss_pred             cC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc--ceeeeccccc
Confidence            99 7789999999999999998876654221111111                    11222322211  1234457889


Q ss_pred             cceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEE
Q 004290          216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL  295 (763)
Q Consensus       216 ~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~  295 (763)
                      ..+++++++|| |+++|+|+.||.|+|||.+++-+             .-+|       ..|.+ .|+.++|+..|+.|+
T Consensus       351 ~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~~SgfC-------------~vTF-------teHts-~Vt~v~f~~~g~~ll  408 (893)
T KOG0291|consen  351 DRITSLAYSPD-GQLIATGAEDGKVKVWNTQSGFC-------------FVTF-------TEHTS-GVTAVQFTARGNVLL  408 (893)
T ss_pred             cceeeEEECCC-CcEEEeccCCCcEEEEeccCceE-------------EEEe-------ccCCC-ceEEEEEEecCCEEE
Confidence            99999999998 79999999999999999998743             3333       34666 599999999999999


Q ss_pred             EEeCCCeEEEEECCCC
Q 004290          296 LSYSGEHVYLMDVNHA  311 (763)
Q Consensus       296 ~~s~d~~i~iwd~~~~  311 (763)
                      +++-||+|+.||+...
T Consensus       409 ssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  409 SSSLDGTVRAWDLKRY  424 (893)
T ss_pred             EeecCCeEEeeeeccc
Confidence            9999999999999884

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.8e-32  Score=256.71  Aligned_cols=188  Identities=16%  Similarity=0.188  Sum_probs=158.4

Q ss_pred             EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEE
Q 004290           85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW  164 (763)
Q Consensus        85 ~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~  164 (763)
                      ...+ .+|..+|+.+.|+|.  -.++++++.|++|++||..++          ++...+++|.+.+.+|+|+. .+.+++
T Consensus       101 ~~~l-~g~r~~vt~v~~hp~--~~~v~~as~d~tikv~D~~tg----------~~e~~LrGHt~sv~di~~~a-~Gk~l~  166 (406)
T KOG0295|consen  101 VQKL-AGHRSSVTRVIFHPS--EALVVSASEDATIKVFDTETG----------ELERSLRGHTDSVFDISFDA-SGKYLA  166 (406)
T ss_pred             hhhh-hccccceeeeeeccC--ceEEEEecCCceEEEEEccch----------hhhhhhhccccceeEEEEec-CccEEE
Confidence            3344 689999999999999  688999999999999999984          44788999999999999998 679999


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEe
Q 004290          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD  244 (763)
Q Consensus       165 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd  244 (763)
                      +++.|=.+++||..+...                        .+....+|...|.+++|-|. ++++++++.|.+|++|+
T Consensus       167 tcSsDl~~~LWd~~~~~~------------------------c~ks~~gh~h~vS~V~f~P~-gd~ilS~srD~tik~We  221 (406)
T KOG0295|consen  167 TCSSDLSAKLWDFDTFFR------------------------CIKSLIGHEHGVSSVFFLPL-GDHILSCSRDNTIKAWE  221 (406)
T ss_pred             ecCCccchhheeHHHHHH------------------------HHHHhcCcccceeeEEEEec-CCeeeecccccceeEEe
Confidence            999999999999887432                        23334467778999999997 69999999999999999


Q ss_pred             CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCC
Q 004290          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS  324 (763)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~  324 (763)
                      +.++-.+.             +|       .+|.. +|..++...||..+++++.|.+|++|-+.++........+.+++
T Consensus       222 ~~tg~cv~-------------t~-------~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v  280 (406)
T KOG0295|consen  222 CDTGYCVK-------------TF-------PGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV  280 (406)
T ss_pred             cccceeEE-------------ec-------cCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccce
Confidence            99985444             33       44555 79999999999999999999999999999976666777777788


Q ss_pred             eeeeeccC
Q 004290          325 KIMSFTPT  332 (763)
Q Consensus       325 ~~~~~~p~  332 (763)
                      ..++|.|.
T Consensus       281 Eci~wap~  288 (406)
T KOG0295|consen  281 ECIAWAPE  288 (406)
T ss_pred             EEEEeccc
Confidence            88887773

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-31  Score=279.28  Aligned_cols=225  Identities=18%  Similarity=0.270  Sum_probs=183.2

Q ss_pred             eeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (763)
Q Consensus        45 ~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~  124 (763)
                      .|+..+..|..++|+|...+++++-..|.|++||.+-+.++..| ..|.++|..++|+|.  ..+|+||+.|.+|++|+.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~--qplFVSGGDDykIkVWnY   80 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPT--QPLFVSGGDDYKIKVWNY   80 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCC--CCeEEecCCccEEEEEec
Confidence            45566788999999999999999999999999999999999999 799999999999999  799999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                      .+          .+++.++.+|.+.|+.+.|++.- -+|+|+|.|.+|+||+..+.++                      
T Consensus        81 k~----------rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~----------------------  127 (1202)
T KOG0292|consen   81 KT----------RRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKC----------------------  127 (1202)
T ss_pred             cc----------ceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCce----------------------
Confidence            87          35689999999999999999944 5788999999999999988763                      


Q ss_pred             eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCC----CCCCCC-cccccc----cccccCC
Q 004290          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK----RMSPPP-CVNYFC----PMHLSEH  275 (763)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~----~~~~~~-~~~~~~----~~~~~~~  275 (763)
                         +....+|.-.|+|.+|+|. ..+++++|-|.+|||||+...+.....+.    ...... ....|.    .......
T Consensus       128 ---iavltGHnHYVMcAqFhpt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE  203 (1202)
T KOG0292|consen  128 ---IAVLTGHNHYVMCAQFHPT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE  203 (1202)
T ss_pred             ---EEEEecCceEEEeeccCCc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence               3334478889999999997 57999999999999999876543322221    000000 000110    0111225


Q ss_pred             CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       276 g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      ||.. .|+-++|+|.-..|++|+.|..|++|.++.
T Consensus       204 GHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmne  237 (1202)
T KOG0292|consen  204 GHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNE  237 (1202)
T ss_pred             cccc-ccceEEecCCcceEEecCCcceeeEEEecc
Confidence            7877 499999999999999999999999998876

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.98  E-value=1.1e-31  Score=281.57  Aligned_cols=210  Identities=22%  Similarity=0.348  Sum_probs=191.3

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      ...++|-||.++|..+.|+|+.++|+++|+|++||+|.+.+..++..+ .||..+|+++.|+|.  |.+|||++.|++.+
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~--GyYFatas~D~tAr  518 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPR--GYYFATASHDQTAR  518 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCC--ceEEEecCCCceee
Confidence            445679999999999999999999999999999999999999999888 799999999999999  89999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  200 (763)
                      +|....          ..|++.+.+|-..|.|+.|+| +..+++|||.|.+|++||+.++..                  
T Consensus       519 LWs~d~----------~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~------------------  569 (707)
T KOG0263|consen  519 LWSTDH----------NKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS------------------  569 (707)
T ss_pred             eeeccc----------CCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcE------------------
Confidence            999987          367999999999999999999 779999999999999999998862                  


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (763)
                             +..+.+|..+|.+++|+|+ |.+|++|+.|+.|.+||+.++..+..+                    .+|.+ 
T Consensus       570 -------VRiF~GH~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWDl~~~~~v~~l--------------------~~Ht~-  620 (707)
T KOG0263|consen  570 -------VRIFTGHKGPVTALAFSPC-GRYLASGDEDGLIKIWDLANGSLVKQL--------------------KGHTG-  620 (707)
T ss_pred             -------EEEecCCCCceEEEEEcCC-CceEeecccCCcEEEEEcCCCcchhhh--------------------hcccC-
Confidence                   2333579999999999996 899999999999999999998766544                    55744 


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .|.+|.||.+|..|++++.|++|++||+...
T Consensus       621 ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  621 TIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            6999999999999999999999999999874

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.7e-30  Score=242.71  Aligned_cols=215  Identities=21%  Similarity=0.351  Sum_probs=176.5

Q ss_pred             eeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC-----------------C-eEEEEEccCCCCceEEEEEeeCC
Q 004290           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-----------------R-KLLHSIETGHSANVFCTKFVPET  105 (763)
Q Consensus        44 ~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~-----------------~-~~~~~~~~~h~~~V~~v~~~p~~  105 (763)
                      ..+..|++++++.+|+|||.++|+|+.|..|+|.|++.                 + -.++++ ..|...|+++.|+|. 
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPr-  183 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPR-  183 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecch-
Confidence            45778999999999999999999999999999999872                 1 245666 689999999999999 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004290          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (763)
Q Consensus       106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~  185 (763)
                       ..+|++|+.|++|++||+......       +..+.+ ....+|.+|.|+| ++.+++.|....++++||+.+.++-  
T Consensus       184 -e~ILiS~srD~tvKlFDfsK~saK-------rA~K~~-qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcf--  251 (430)
T KOG0640|consen  184 -ETILISGSRDNTVKLFDFSKTSAK-------RAFKVF-QDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCF--  251 (430)
T ss_pred             -hheEEeccCCCeEEEEecccHHHH-------HHHHHh-hccceeeeEeecC-CCceEEEecCCCceeEEeccceeEe--
Confidence             699999999999999999864321       112223 3456899999999 7789999999999999999987632  


Q ss_pred             CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccc
Q 004290          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (763)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  265 (763)
                                  ...        .-..+|+..|+++.+++. +++.++++.||.|++||--+.+             |++
T Consensus       252 ------------vsa--------nPd~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~r-------------Cv~  297 (430)
T KOG0640|consen  252 ------------VSA--------NPDDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNR-------------CVR  297 (430)
T ss_pred             ------------eec--------CcccccccceeEEEecCC-ccEEEEeccCCcEEeeccccHH-------------HHH
Confidence                        111        112358899999999997 7899999999999999987764             444


Q ss_pred             ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       266 ~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      ++.      ..|.+..|.+..|..+|+||++++.|..+++|.+.++.
T Consensus       298 t~~------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R  338 (430)
T KOG0640|consen  298 TIG------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR  338 (430)
T ss_pred             HHH------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence            432      33555579999999999999999999999999999964

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=7e-31  Score=246.34  Aligned_cols=205  Identities=23%  Similarity=0.459  Sum_probs=171.5

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-------cCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~-------~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      |.+..+.|..|||||++|++|+.||-|.+||..+|+..+.+.       --+..+|.|+.|+.+  ...|++|+.||.|+
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD--sEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD--SEMLASGSQDGKIK  288 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc--HHHhhccCcCCcEE
Confidence            456778999999999999999999999999999987654331       257789999999999  59999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      +|.+.++          .+++.|. +|...|+|+.|+.++ ..+++++.|.++++.-+.+++.                 
T Consensus       289 vWri~tG----------~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~-----------------  340 (508)
T KOG0275|consen  289 VWRIETG----------QCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKC-----------------  340 (508)
T ss_pred             EEEEecc----------hHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchh-----------------
Confidence            9999984          3467775 899999999999955 6667999999999999998873                 


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                              +..+.+|...|+...|.++ |..+++++.||+|++|+..+..             |+.+|.+..      ..
T Consensus       341 --------LKEfrGHsSyvn~a~ft~d-G~~iisaSsDgtvkvW~~Ktte-------------C~~Tfk~~~------~d  392 (508)
T KOG0275|consen  341 --------LKEFRGHSSYVNEATFTDD-GHHIISASSDGTVKVWHGKTTE-------------CLSTFKPLG------TD  392 (508)
T ss_pred             --------HHHhcCccccccceEEcCC-CCeEEEecCCccEEEecCcchh-------------hhhhccCCC------Cc
Confidence                    4566789999999999997 7899999999999999999864             555554433      22


Q ss_pred             cceeEEEEcCC-CCEEEEEeCCCeEEEEECCC
Q 004290          280 LHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       280 ~~i~~v~~spd-g~~l~~~s~d~~i~iwd~~~  310 (763)
                      .+|++|..-|. -..++++...++|+|.++..
T Consensus       393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG  424 (508)
T KOG0275|consen  393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG  424 (508)
T ss_pred             ccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence            36999988885 46788888899999998766

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=3e-31  Score=257.34  Aligned_cols=205  Identities=20%  Similarity=0.297  Sum_probs=167.6

Q ss_pred             cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      ....+..|.+.|..+.|-++...|++|+.|..|++|+....+  .+.++ .+..++|++++|.++  +..+++++.|+.+
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tL-aGs~g~it~~d~d~~--~~~~iAas~d~~~  243 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTL-AGSLGNITSIDFDSD--NKHVIAASNDKNL  243 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhh-hccCCCcceeeecCC--CceEEeecCCCce
Confidence            445678899999999999998999999999999999998766  55566 688899999999999  7999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      ++|++...          ....++.+|.+.|+++.|.. +...+++|+.|.+|+.||+....+......           
T Consensus       244 r~Wnvd~~----------r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-----------  301 (459)
T KOG0288|consen  244 RLWNVDSL----------RLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLP-----------  301 (459)
T ss_pred             eeeeccch----------hhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccc-----------
Confidence            99999973          44788999999999999987 434488999999999999998653211111           


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                                     ...++.|+.++   ..+++|-.|+.||+||.++.....+.+                    .+  
T Consensus       302 ---------------~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~--------------------~g--  341 (459)
T KOG0288|consen  302 ---------------GSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSVP--------------------LG--  341 (459)
T ss_pred             ---------------cccccceEecc---eeeeecccccceEEEeccCCceeeEee--------------------cC--
Confidence                           12344555543   478999999999999999876554331                    11  


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +.|++|..+++|..|++++.|.++.+.|+++.
T Consensus       342 g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~  373 (459)
T KOG0288|consen  342 GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK  373 (459)
T ss_pred             cceeeEeeccCCeEEeeecCCCceeeeecccc
Confidence            15999999999999999999999999999984

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.7e-30  Score=275.04  Aligned_cols=215  Identities=20%  Similarity=0.332  Sum_probs=170.8

Q ss_pred             ccceeec-cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC--------------------------------C-----
Q 004290           41 SQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--------------------------------R-----   82 (763)
Q Consensus        41 ~~~~~l~-gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~--------------------------------~-----   82 (763)
                      ...+++. +|++.|.++.||+||+|||+||+|+.|+||.+..                                .     
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            4445667 8999999999999999999999999999998654                                0     


Q ss_pred             -----------------------eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCC
Q 004290           83 -----------------------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP  139 (763)
Q Consensus        83 -----------------------~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~  139 (763)
                                             +.++.+ .||.+.|.++.|+.+   ++|++++.|++||+|++...          .+
T Consensus       337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~----------~C  402 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRK----------EC  402 (712)
T ss_pred             cccccccCCccccCCCccccccccchhhh-hccchhheecccccC---CeeEeccccccEEeecCCCc----------ce
Confidence                                   011112 699999999999987   79999999999999999962          55


Q ss_pred             ceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceE
Q 004290          140 SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK  219 (763)
Q Consensus       140 ~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (763)
                      +..|. |.+.|+||+|+|.+.++|++|+-||.|+||++...+             ...|.             .-..-|+
T Consensus       403 L~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-------------Vv~W~-------------Dl~~lIT  455 (712)
T KOG0283|consen  403 LKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-------------VVDWN-------------DLRDLIT  455 (712)
T ss_pred             eeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe-------------eEeeh-------------hhhhhhe
Confidence            77775 999999999999999999999999999999998765             12221             1235799


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC-CEEEEEe
Q 004290          220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSY  298 (763)
Q Consensus       220 ~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg-~~l~~~s  298 (763)
                      +++|.|+ |+..++|+.+|.+++|+.+..+......-.....+          . ..+.  .||++.|.|.. ..|++.+
T Consensus       456 Avcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K----------k-~~~~--rITG~Q~~p~~~~~vLVTS  521 (712)
T KOG0283|consen  456 AVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK----------K-KQGK--RITGLQFFPGDPDEVLVTS  521 (712)
T ss_pred             eEEeccC-CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc----------c-ccCc--eeeeeEecCCCCCeEEEec
Confidence            9999998 89999999999999999998765433321111110          0 1122  59999999843 4689999


Q ss_pred             CCCeEEEEECCC
Q 004290          299 SGEHVYLMDVNH  310 (763)
Q Consensus       299 ~d~~i~iwd~~~  310 (763)
                      .|..|+|||.+.
T Consensus       522 nDSrIRI~d~~~  533 (712)
T KOG0283|consen  522 NDSRIRIYDGRD  533 (712)
T ss_pred             CCCceEEEeccc
Confidence            999999999876

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.1e-30  Score=234.87  Aligned_cols=202  Identities=17%  Similarity=0.244  Sum_probs=158.8

Q ss_pred             EEEEeCC-CCCEEEEE-------eCCCcEEEEeCCCCeEEEEEc-cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290           54 NAISWNS-KGSLLISG-------SDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (763)
Q Consensus        54 ~~l~fsp-~g~~Lasg-------s~D~~v~iWd~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~  124 (763)
                      .++.||| -.++||.+       ...|++.|.++...+-+..+. ..-...++.++|+++. .+.+++++.||+++|||.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~-e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENH-ENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCC-cceEEEEecCceEEEecc
Confidence            5788999 23334433       236889999986444333331 1345789999999987 889999999999999997


Q ss_pred             CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                      ..+.         .|+..++.|...|.++.|++.....+++++.|++||+||...++                       
T Consensus        91 ~~~s---------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-----------------------  138 (311)
T KOG0277|consen   91 TMPS---------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-----------------------  138 (311)
T ss_pred             CCCC---------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-----------------------
Confidence            6543         57999999999999999999888899999999999999987664                       


Q ss_pred             eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (763)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  284 (763)
                        .+.++.+|..-|...+|+|..+++|++++.|+++++||++.......+                    ..|.. .|.+
T Consensus       139 --Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i--------------------~ah~~-Eil~  195 (311)
T KOG0277|consen  139 --SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI--------------------EAHNS-EILC  195 (311)
T ss_pred             --ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE--------------------Eeccc-eeEe
Confidence              344466788999999999999999999999999999999853211111                    22432 5999


Q ss_pred             EEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 004290          285 VTFSP-NGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       285 v~~sp-dg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +.|+. +.+.|++|+.|+.|++||+++-
T Consensus       196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~  223 (311)
T KOG0277|consen  196 CDWSKYNHNVLATGGVDNLVRGWDIRNL  223 (311)
T ss_pred             ecccccCCcEEEecCCCceEEEEehhhc
Confidence            99997 5567788888999999999883

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.2e-28  Score=253.85  Aligned_cols=383  Identities=14%  Similarity=0.147  Sum_probs=276.5

Q ss_pred             ccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCC
Q 004290           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (763)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~  106 (763)
                      -+++.+++  .++.+-...--.+...|.+++.||+|.+|++..+.|.+.+-++.....++.+  ....+|.|+.|+|+  
T Consensus        34 GNrvsv~d--LknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f--~fk~~v~~i~fSPn--  107 (893)
T KOG0291|consen   34 GNRVSVFD--LKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRF--NFKRGVGAIKFSPN--  107 (893)
T ss_pred             CCEEEEEE--ccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEE--eecCccceEEECCC--
Confidence            45555655  2332222222246788999999999999999999999999999988888877  45688999999999  


Q ss_pred             CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (763)
Q Consensus       107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  186 (763)
                      |.++|.|. .+.+.||........  ..+.....+.+.+|...|.+|.|+. +.++|++|+.|-++++|+++..+..   
T Consensus       108 g~~fav~~-gn~lqiw~~P~~~~~--~~~pFvl~r~~~g~fddi~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~k~~---  180 (893)
T KOG0291|consen  108 GKFFAVGC-GNLLQIWHAPGEIKN--EFNPFVLHRTYLGHFDDITSIDWSD-DSRLLVTGSRDLSARLFGVDGNKNL---  180 (893)
T ss_pred             CcEEEEEe-cceeEEEecCcchhc--ccCcceEeeeecCCccceeEEEecc-CCceEEeccccceEEEEEecccccc---
Confidence            78888776 478999988743221  1222334567789999999999998 7799999999999999999887632   


Q ss_pred             CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccC----------C
Q 004290          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ----------K  256 (763)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~----------~  256 (763)
                                          ......+|...|.++-|..+ ...+++.+.||.+.+|-.........-.          .
T Consensus       181 --------------------~~~~l~gHkd~VvacfF~~~-~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~  239 (893)
T KOG0291|consen  181 --------------------FTYALNGHKDYVVACFFGAN-SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEE  239 (893)
T ss_pred             --------------------ceEeccCCCcceEEEEeccC-cceEEEEecCceEEEEEecCCCccccccccccccccccc
Confidence                                12233468899999999987 5789999999999999876321100000          0


Q ss_pred             CCCCCCc-----ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeecc
Q 004290          257 RMSPPPC-----VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (763)
Q Consensus       257 ~~~~~~~-----~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (763)
                      ...+.+.     .......|...  .....|++.+|++....|+++-..|...+|++..........-....+..++|+.
T Consensus       240 ~~~~~Eek~~~~~~~k~~k~~ln--~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~  317 (893)
T KOG0291|consen  240 MDEDGEEKTHKIFWYKTKKHYLN--QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNS  317 (893)
T ss_pred             ccccchhhhcceEEEEEEeeeec--ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecc
Confidence            0000000     00111112111  1113599999999999999999999999999988543332222334444444443


Q ss_pred             CCCCcccCCCCCcccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHH
Q 004290          332 TLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRA  411 (763)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (763)
                      .+.-+++.+..                                                                     
T Consensus       318 tGDWiA~g~~k---------------------------------------------------------------------  328 (893)
T KOG0291|consen  318 TGDWIAFGCSK---------------------------------------------------------------------  328 (893)
T ss_pred             cCCEEEEcCCc---------------------------------------------------------------------
Confidence            32222111110                                                                     


Q ss_pred             HHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHH
Q 004290          412 ALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAA  491 (763)
Q Consensus       412 ~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  491 (763)
                                                                                                      
T Consensus       329 --------------------------------------------------------------------------------  328 (893)
T KOG0291|consen  329 --------------------------------------------------------------------------------  328 (893)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhcccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhhhhccccCCCCCCCCcccccccccCC
Q 004290          492 ETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGS  571 (763)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs  571 (763)
                                                                                                      
T Consensus       329 --------------------------------------------------------------------------------  328 (893)
T KOG0291|consen  329 --------------------------------------------------------------------------------  328 (893)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceeeeccCCCccccccCCCCCCCCCCCCCCCCCCCCcccccccceEEeeecccccceeeeecccCCCCEEEEecCCCcE
Q 004290          572 LNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRW  651 (763)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i  651 (763)
                                                    .++..+|....-.++.+-.||.+.++++.    +||||++||+|++||.|
T Consensus       329 ------------------------------lgQLlVweWqsEsYVlKQQgH~~~i~~l~----YSpDgq~iaTG~eDgKV  374 (893)
T KOG0291|consen  329 ------------------------------LGQLLVWEWQSESYVLKQQGHSDRITSLA----YSPDGQLIATGAEDGKV  374 (893)
T ss_pred             ------------------------------cceEEEEEeeccceeeeccccccceeeEE----ECCCCcEEEeccCCCcE
Confidence                                          11111222223336667789999999988    99999999999999999


Q ss_pred             EEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccC
Q 004290          652 FIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG  708 (763)
Q Consensus       652 ~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~  708 (763)
                      +|||..+|-|+-++.-|++.|++++|+..++.|+|+|.||+||.||+....+.++|.
T Consensus       375 KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft  431 (893)
T KOG0291|consen  375 KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT  431 (893)
T ss_pred             EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec
Confidence            999999999999999999999999999999999999999999999999998888875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=6.9e-31  Score=254.32  Aligned_cols=160  Identities=16%  Similarity=0.217  Sum_probs=132.1

Q ss_pred             CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC
Q 004290           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  170 (763)
Q Consensus        91 ~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg  170 (763)
                      .-..+|..+.|.|+  |+.|++|+..|.+.+|+...          ......+.+|..+|++|.|++ ++.+++||..+|
T Consensus        94 Kvkc~V~~v~WtPe--GRRLltgs~SGEFtLWNg~~----------fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG  160 (464)
T KOG0284|consen   94 KVKCPVNVVRWTPE--GRRLLTGSQSGEFTLWNGTS----------FNFETILQAHDSPVRTMKWSH-NGTWMISGDKGG  160 (464)
T ss_pred             ccccceeeEEEcCC--CceeEeecccccEEEecCce----------eeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCc
Confidence            34568999999999  89999999999999999865          233445678999999999999 779999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCC-CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP-PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       171 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      .|++|+.....                          +... ..|...|++++|+|. ...|++++.||+|+|||.+..+
T Consensus       161 ~iKyWqpnmnn--------------------------Vk~~~ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~~k  213 (464)
T KOG0284|consen  161 MIKYWQPNMNN--------------------------VKIIQAHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRMPK  213 (464)
T ss_pred             eEEecccchhh--------------------------hHHhhHhhhhhhheeccCCC-CceeEEecCCCeEEEEeccCCc
Confidence            99999976543                          1111 234588999999996 5799999999999999999765


Q ss_pred             CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .-..+                    .||.- .|.+++|+|.-..|++++.|+.|++||.+++
T Consensus       214 ee~vL--------------------~GHgw-dVksvdWHP~kgLiasgskDnlVKlWDprSg  254 (464)
T KOG0284|consen  214 EERVL--------------------RGHGW-DVKSVDWHPTKGLIASGSKDNLVKLWDPRSG  254 (464)
T ss_pred             hhhee--------------------ccCCC-CcceeccCCccceeEEccCCceeEeecCCCc
Confidence            33222                    44544 4999999999999999999999999999985

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=5.4e-29  Score=227.75  Aligned_cols=206  Identities=19%  Similarity=0.336  Sum_probs=167.4

Q ss_pred             eeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-ccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004290           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (763)
Q Consensus        44 ~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw  122 (763)
                      +++++|.+.|.+|+|+.+|..||+|+.|+++.+|+++..+..... ..+|.+.|-.++|+|.+ .++|++++.|.+|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC-CcceEEecCCceEEEE
Confidence            778899999999999999999999999999999999887544332 26899999999999986 7899999999999999


Q ss_pred             ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (763)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (763)
                      |++.+          ++......- +.-.-+.|+| ++.+++.++.|..|...|.++.+..                   
T Consensus        93 d~r~~----------k~~~~i~~~-~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~-------------------  141 (313)
T KOG1407|consen   93 DIRSG----------KCTARIETK-GENINITWSP-DGEYIAVGNKDDRITFIDARTYKIV-------------------  141 (313)
T ss_pred             EeccC----------cEEEEeecc-CcceEEEEcC-CCCEEEEecCcccEEEEEeccccee-------------------
Confidence            99974          334444433 3334578999 6689999999999999999987632                   


Q ss_pred             CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccce
Q 004290          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (763)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i  282 (763)
                             ........++-++|+-+ +++|+....-|.|.|......+++.++                    ..|.. ..
T Consensus       142 -------~~~~~~~e~ne~~w~~~-nd~Fflt~GlG~v~ILsypsLkpv~si--------------------~AH~s-nC  192 (313)
T KOG1407|consen  142 -------NEEQFKFEVNEISWNNS-NDLFFLTNGLGCVEILSYPSLKPVQSI--------------------KAHPS-NC  192 (313)
T ss_pred             -------ehhcccceeeeeeecCC-CCEEEEecCCceEEEEecccccccccc--------------------ccCCc-ce
Confidence                   11123456788899854 578887777899999998887766554                    34554 48


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          283 THVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       283 ~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      .+|.|+|+|+|+++|+.|..+.+||+..
T Consensus       193 icI~f~p~GryfA~GsADAlvSLWD~~E  220 (313)
T KOG1407|consen  193 ICIEFDPDGRYFATGSADALVSLWDVDE  220 (313)
T ss_pred             EEEEECCCCceEeeccccceeeccChhH
Confidence            8899999999999999999999999876

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=2.5e-29  Score=234.54  Aligned_cols=162  Identities=22%  Similarity=0.325  Sum_probs=137.2

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      .+|++.|+.+.|+|+  |.+|+||+.|..|.+|++...   +      +-..++++|++.|..+.|.+ +++.+++++.|
T Consensus        44 ~gh~geI~~~~F~P~--gs~~aSgG~Dr~I~LWnv~gd---c------eN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtD  111 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPD--GSCFASGGSDRAIVLWNVYGD---C------ENFWVLKGHSGAVMELHGMR-DGSHILSCGTD  111 (338)
T ss_pred             CCCcceEEEEEECCC--CCeEeecCCcceEEEEecccc---c------cceeeeccccceeEeeeecc-CCCEEEEecCC
Confidence            699999999999998  899999999999999997631   1      23567889999999999999 66889999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      ++|+.||+++++.                         +..+..|...|++++-+..+..++.+|+.|+++++||+|+..
T Consensus       112 k~v~~wD~~tG~~-------------------------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~  166 (338)
T KOG0265|consen  112 KTVRGWDAETGKR-------------------------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE  166 (338)
T ss_pred             ceEEEEeccccee-------------------------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence            9999999999873                         333456777888888655567789999999999999999876


Q ss_pred             CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      .+.++.                      ...+++++.|..++..+++|+-|+.|++||++.
T Consensus       167 ~~~t~~----------------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~  205 (338)
T KOG0265|consen  167 AIKTFE----------------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK  205 (338)
T ss_pred             hhhccc----------------------cceeEEEEEecccccceeeccccCceeeecccc
Confidence            554431                      122599999999999999999999999999987

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.4e-30  Score=245.83  Aligned_cols=202  Identities=17%  Similarity=0.246  Sum_probs=164.9

Q ss_pred             cceeeccccCceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           42 QERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        42 ~~~~l~gH~~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      .+..|.||.++|.|++=+|.. ..+|||+.||.|+|||+.+..++.++ ..|.+.|..+++..    ..+++++.|++|+
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~----~~~~tvgdDKtvK  132 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ----TSFFTVGDDKTVK  132 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc----cceEEecCCccee
Confidence            456679999999999999977 78999999999999999999999999 89999999999986    4789999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  200 (763)
                      .|.+.-           .++.++.+ ...+..|.-+. ....|+|||+  .|-|||.....++                 
T Consensus       133 ~wk~~~-----------~p~~tilg-~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv-----------------  180 (433)
T KOG0268|consen  133 QWKIDG-----------PPLHTILG-KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPV-----------------  180 (433)
T ss_pred             eeeccC-----------Ccceeeec-ccccccccccc-ccccccccCc--eeeecccccCCcc-----------------
Confidence            999884           34666653 44566676665 4578989886  6999998766533                 


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (763)
                              ....-....|.++.|+|....+|+++.+|+.|.+||+|..+++..+...+                      
T Consensus       181 --------~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m----------------------  230 (433)
T KOG0268|consen  181 --------SSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM----------------------  230 (433)
T ss_pred             --------ceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec----------------------
Confidence                    11122356789999999888899999999999999999998776543211                      


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      .-+.++|+|.+-.+++++.|..++.||++.
T Consensus       231 RTN~IswnPeafnF~~a~ED~nlY~~DmR~  260 (433)
T KOG0268|consen  231 RTNTICWNPEAFNFVAANEDHNLYTYDMRN  260 (433)
T ss_pred             cccceecCccccceeeccccccceehhhhh
Confidence            357799999887788888999999999887

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=2e-30  Score=245.58  Aligned_cols=218  Identities=18%  Similarity=0.300  Sum_probs=187.7

Q ss_pred             cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p  103 (763)
                      +.-+++|++|+  .....+.+.|.||++.|.|+.|.  .+.|++|+.|.+|+|||+++|+++.++ .+|...|..+.|+.
T Consensus       213 GlrDnTikiWD--~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl-ihHceaVLhlrf~n  287 (499)
T KOG0281|consen  213 GLRDNTIKIWD--KNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLHLRFSN  287 (499)
T ss_pred             ccccCceEEec--cccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH-hhhcceeEEEEEeC
Confidence            34578999999  77888999999999999999985  569999999999999999999999998 79999999999984


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (763)
Q Consensus       104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~  183 (763)
                          .++++++.|.+|.+||+..+..       ..+.+.+.+|...|+.+.|+.   +++++++.|.+|++|++.+.+. 
T Consensus       288 ----g~mvtcSkDrsiaVWdm~sps~-------it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~ef-  352 (499)
T KOG0281|consen  288 ----GYMVTCSKDRSIAVWDMASPTD-------ITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEF-  352 (499)
T ss_pred             ----CEEEEecCCceeEEEeccCchH-------HHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceee-
Confidence                5999999999999999997542       244678899999999999953   6999999999999999998763 


Q ss_pred             CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004290          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (763)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (763)
                                              +....+|...|.|+.+.   +.++++|++|.+||+||+..|..+..+         
T Consensus       353 ------------------------vRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvL---------  396 (499)
T KOG0281|consen  353 ------------------------VRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVL---------  396 (499)
T ss_pred             ------------------------ehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHH---------
Confidence                                    33445677788888875   579999999999999999998655443         


Q ss_pred             ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                                 .||.. -|.++.|  |.+.+++|..||+|++||+..+
T Consensus       397 -----------eGHEe-LvRciRF--d~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  397 -----------EGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             -----------hchHH-hhhheee--cCceeeeccccceEEEEecccc
Confidence                       56776 4999999  5578999999999999999985

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.97  E-value=3.2e-29  Score=257.98  Aligned_cols=442  Identities=17%  Similarity=0.169  Sum_probs=294.0

Q ss_pred             CCcccccccccchhhhhccccceeeccccCceEEEEeCCCC---CEEEEEeCCCcEEEEeCCCCe---------------
Q 004290           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG---SLLISGSDDTHINVWSYSSRK---------------   83 (763)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g---~~Lasgs~D~~v~iWd~~~~~---------------   83 (763)
                      .....+..+.++.....+++.+.+|+||.+.|.+|+|...+   -+|||+|+|..||||.+.-+.               
T Consensus       163 a~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~  242 (764)
T KOG1063|consen  163 ACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLS  242 (764)
T ss_pred             EecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccccccc
Confidence            34566778888887788899999999999999999998744   489999999999999864221               


Q ss_pred             ---------EEE------EEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC
Q 004290           84 ---------LLH------SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (763)
Q Consensus        84 ---------~~~------~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (763)
                               .+.      .+..||...|.++.|+|.  +..|++++.|.++.+|......+...+.   -.+..+.+...
T Consensus       243 ~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~--~~~LLSASaDksmiiW~pd~~tGiWv~~---vRlGe~gg~a~  317 (764)
T KOG1063|consen  243 NLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPE--GLDLLSASADKSMIIWKPDENTGIWVDV---VRLGEVGGSAG  317 (764)
T ss_pred             CCceeeeeeeEEEEEehhhhhcCcccceEEEEEccc--hhhheecccCcceEEEecCCccceEEEE---EEeeccccccc
Confidence                     111      223599999999999999  7899999999999999988754422100   01222334455


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCC
Q 004290          149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP  228 (763)
Q Consensus       149 ~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  228 (763)
                      .-....|+| +++.+++-+.-|..++|-.....               +|.       ......+|...|++++|+|. |
T Consensus       318 GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~---------------~w~-------~~~~iSGH~~~V~dv~W~ps-G  373 (764)
T KOG1063|consen  318 GFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKT---------------FWT-------QEPVISGHVDGVKDVDWDPS-G  373 (764)
T ss_pred             ceeeEEEcC-CCCEEEEecccCcEEEEeccCcc---------------cee-------eccccccccccceeeeecCC-C
Confidence            678889999 66888899999999999833322               111       12233478899999999997 7


Q ss_pred             cEEEEEeCCCcEEEEeCCCCCCC--cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004290          229 HLLLVGGSDAFARLYDRRMLPPL--TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM  306 (763)
Q Consensus       229 ~~l~sgs~Dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iw  306 (763)
                      .+|++.+.|.+-|+|-.- ++..  ..+..+               ..+||   .++|++|-+....+++|.....+++|
T Consensus       374 eflLsvs~DQTTRlFa~w-g~q~~wHEiaRP---------------QiHGy---Dl~c~~~vn~~~~FVSgAdEKVlRvF  434 (764)
T KOG1063|consen  374 EFLLSVSLDQTTRLFARW-GRQQEWHEIARP---------------QIHGY---DLTCLSFVNEDLQFVSGADEKVLRVF  434 (764)
T ss_pred             CEEEEeccccceeeeccc-ccccceeeeccc---------------ccccc---cceeeehccCCceeeecccceeeeee
Confidence            899999999999999665 2211  111100               00333   49999999865557777778888999


Q ss_pred             ECCCCCccceEeecCCCCeeeeeccCCCCcccCCCCCcccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHH
Q 004290          307 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEA  386 (763)
Q Consensus       307 d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  386 (763)
                      +....-.                                                  ..                     
T Consensus       435 ~aPk~fv--------------------------------------------------~~---------------------  443 (764)
T KOG1063|consen  435 EAPKSFV--------------------------------------------------KS---------------------  443 (764)
T ss_pred             cCcHHHH--------------------------------------------------HH---------------------
Confidence            7654210                                                  00                     


Q ss_pred             hHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHH
Q 004290          387 CNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIA  466 (763)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  466 (763)
                      +..+-.....+  ..                                                                 
T Consensus       444 l~~i~g~~~~~--~~-----------------------------------------------------------------  456 (764)
T KOG1063|consen  444 LMAICGKCFKG--SD-----------------------------------------------------------------  456 (764)
T ss_pred             HHHHhCccccC--ch-----------------------------------------------------------------
Confidence            00000000000  00                                                                 


Q ss_pred             HhccCCCChhhHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhh
Q 004290          467 AQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEE  546 (763)
Q Consensus       467 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  546 (763)
                         ..|+                                  ...-+.+.|++...-...+.    ++     .+.....|
T Consensus       457 ---~~p~----------------------------------gA~VpaLGLSnKa~~~~e~~----~G-----~~~~~~~e  490 (764)
T KOG1063|consen  457 ---ELPD----------------------------------GANVPALGLSNKAFFPGETN----TG-----GEAAVCAE  490 (764)
T ss_pred             ---hccc----------------------------------ccccccccccCCCCcccccc----cc-----cccceeee
Confidence               0000                                  01111122222111110000    00     00000011


Q ss_pred             hhccccCCCCCCCCcccccccccCCcceeeeccCCCccccccCCCC-CCCCCC------CCCCCCCCCCcccccccceEE
Q 004290          547 VEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGS-SGSPSS------SSQNDRIPYQPETVIDMKQRY  619 (763)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~  619 (763)
                       ...........+ +..+...+.-.|+..++|-+..+.+-.+...+ .+...+      ..++..+++|....+..++.+
T Consensus       491 -t~~~~~p~~L~e-PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L  568 (764)
T KOG1063|consen  491 -TPLAAAPCELTE-PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL  568 (764)
T ss_pred             -cccccCchhccC-CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee
Confidence             111122223334 34445555667777788888777666544422 232222      236778888999999999999


Q ss_pred             eeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcE----EEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEE
Q 004290          620 VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRL----IKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKI  695 (763)
Q Consensus       620 ~gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~----~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~Irv  695 (763)
                      .+|...||.++    |||||+||+|.|.|+++.+|..+....    ...++.|++.|+++.|+|+..+|||+|.|.+|+|
T Consensus       569 ~~HsLTVT~l~----FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV  644 (764)
T KOG1063|consen  569 EGHSLTVTRLA----FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKV  644 (764)
T ss_pred             cccceEEEEEE----ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEE
Confidence            99999999999    999999999999999999999874432    3458899999999999999999999999999999


Q ss_pred             EcCCCC
Q 004290          696 WTPSAS  701 (763)
Q Consensus       696 W~~~~~  701 (763)
                      |.....
T Consensus       645 W~~~~~  650 (764)
T KOG1063|consen  645 WEEPDL  650 (764)
T ss_pred             EeccCc
Confidence            999888

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.7e-29  Score=258.18  Aligned_cols=103  Identities=17%  Similarity=0.180  Sum_probs=91.3

Q ss_pred             CCCCCCCCCCcccccccceEEeeeccc-ccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEe
Q 004290          599 SSQNDRIPYQPETVIDMKQRYVGHCNV-GTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQC  677 (763)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~gh~~~-~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~  677 (763)
                      .|....+.+......+.++.|+|-.+. ++.|+..  ..|.|-|||+...|+++.++|.-+|+++.++.||.+.|++|.|
T Consensus       614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~--lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF  691 (1080)
T KOG1408|consen  614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI--LDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKF  691 (1080)
T ss_pred             EecccceEEEeccccceeeeecccccCCCceEEEE--ECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeee
Confidence            467777788888889999999985555 5656655  7999999999999999999999999999999999999999999


Q ss_pred             eCCCCeEEEEeCCCcEEEEcCCCCCC
Q 004290          678 HPFDCVVATSGIDNTIKIWTPSASVP  703 (763)
Q Consensus       678 sp~~~~laS~s~D~~IrvW~~~~~~~  703 (763)
                      .+|.++|+|++.||.|.||.+.....
T Consensus       692 ~nDCkHlISvsgDgCIFvW~lp~~mi  717 (1080)
T KOG1408|consen  692 LNDCKHLISVSGDGCIFVWKLPLTMI  717 (1080)
T ss_pred             cccchhheeecCCceEEEEECchhHh
Confidence            99999999999999999999876443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.7e-29  Score=254.15  Aligned_cols=251  Identities=15%  Similarity=0.193  Sum_probs=212.1

Q ss_pred             cccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC
Q 004290           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (763)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~  105 (763)
                      ++..+.||..  ++...++.++--.-+|++..|-+-.+++++|+.|..|+||+..+++.++.| ..|..-|.|++.+|. 
T Consensus        33 ynG~V~IWny--etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt-  108 (794)
T KOG0276|consen   33 YNGDVQIWNY--ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPT-  108 (794)
T ss_pred             ecCeeEEEec--ccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCC-
Confidence            5688999984  445567888878889999999999999999999999999999999999999 899999999999999 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004290          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (763)
Q Consensus       106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~  185 (763)
                       ..+++|+|.|-+|++||.+..         +.+.+++.+|...|.+++|+|.+.+.|+|++-|++|++|.+.++.+   
T Consensus       109 -~P~vLtsSDDm~iKlW~we~~---------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~---  175 (794)
T KOG0276|consen  109 -LPYVLTSSDDMTIKLWDWENE---------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP---  175 (794)
T ss_pred             -CCeEEecCCccEEEEeeccCc---------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC---
Confidence             699999999999999999852         5678999999999999999999999999999999999999987652   


Q ss_pred             CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC-CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcc
Q 004290          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (763)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (763)
                                            ..+..+|...|+|+.|-+.+ .-+|++|+.|.+|+|||.++.+++.++          
T Consensus       176 ----------------------nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL----------  223 (794)
T KOG0276|consen  176 ----------------------NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL----------  223 (794)
T ss_pred             ----------------------ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh----------
Confidence                                  33445788899999998842 139999999999999999987544433          


Q ss_pred             cccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCCCc
Q 004290          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL  336 (763)
Q Consensus       265 ~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  336 (763)
                                .||.+ .|..+.|+|.-..+++|+.||+++||+..+-+.........+.+..++..+....+
T Consensus       224 ----------eGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i  284 (794)
T KOG0276|consen  224 ----------EGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKI  284 (794)
T ss_pred             ----------hcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeE
Confidence                      66777 59999999999999999999999999998855444444444555666655554443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=4.5e-28  Score=261.33  Aligned_cols=200  Identities=22%  Similarity=0.335  Sum_probs=170.1

Q ss_pred             eeecc-ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEE-EccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004290           44 RELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS-IETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (763)
Q Consensus        44 ~~l~g-H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~-~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i  121 (763)
                      +.+.+ |...|.+..|.  ..++++++.|.+|++||..++..+.. + .||.+.|.+++|...  +.+|++|+.|.++++
T Consensus       201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l-~GH~g~V~~l~~~~~--~~~lvsgS~D~t~rv  275 (537)
T KOG0274|consen  201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRL-VGHFGGVWGLAFPSG--GDKLVSGSTDKTERV  275 (537)
T ss_pred             eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeec-cCCCCCceeEEEecC--CCEEEEEecCCcEEe
Confidence            34444 56778888888  66799999999999999999999888 6 899999999999985  789999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004290          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (763)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  201 (763)
                      ||..++          .+..++.+|.+.|.+|...+   .++++|+.|.+|++|++.++...                  
T Consensus       276 Wd~~sg----------~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l------------------  324 (537)
T KOG0274|consen  276 WDCSTG----------ECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACL------------------  324 (537)
T ss_pred             EecCCC----------cEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceE------------------
Confidence            998873          45899999999999999854   68889999999999999977522                  


Q ss_pred             CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccc
Q 004290          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (763)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  281 (763)
                             ....+|..+|+++..+   +.++++|+.|++|++||+.+++.+.++                    .||.. .
T Consensus       325 -------~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl--------------------~gH~~-~  373 (537)
T KOG0274|consen  325 -------NLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSL--------------------SGHTG-R  373 (537)
T ss_pred             -------EEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeee--------------------cCCcc-e
Confidence                   2223478999999998   359999999999999999988765544                    56766 6


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       282 i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      |.++.+.+. ..+++|+.|+.|++||+.+.
T Consensus       374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             EEEEEecCc-ceEEeeeeccceEeecCCch
Confidence            999988776 78999999999999999883

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=7.5e-29  Score=236.06  Aligned_cols=163  Identities=20%  Similarity=0.314  Sum_probs=143.7

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      .+|.+.|.|+++.|.  +..|++|+.|++|+|||+.++          ....++.+|...|..+++++.. -|+++++.|
T Consensus       148 ~gHlgWVr~vavdP~--n~wf~tgs~DrtikIwDlatg----------~LkltltGhi~~vr~vavS~rH-pYlFs~ged  214 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPG--NEWFATGSADRTIKIWDLATG----------QLKLTLTGHIETVRGVAVSKRH-PYLFSAGED  214 (460)
T ss_pred             hhccceEEEEeeCCC--ceeEEecCCCceeEEEEcccC----------eEEEeecchhheeeeeeecccC-ceEEEecCC
Confidence            799999999999999  799999999999999999984          3467788999999999999954 577799999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      +.|++||+...+                         .+....+|...|.|++.+|. -+.|++|+.|.++|+||+|+..
T Consensus       215 k~VKCwDLe~nk-------------------------vIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~  268 (460)
T KOG0285|consen  215 KQVKCWDLEYNK-------------------------VIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRA  268 (460)
T ss_pred             CeeEEEechhhh-------------------------hHHHhccccceeEEEecccc-ceeEEecCCcceEEEeeecccc
Confidence            999999999876                         34455678899999999997 5799999999999999999876


Q ss_pred             CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      .+..+                    .||.. +|..|.+.|-...+++|+.|++|++||+..++
T Consensus       269 ~V~~l--------------------~GH~~-~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk  310 (460)
T KOG0285|consen  269 SVHVL--------------------SGHTN-PVASVMCQPTDPQVITGSHDSTVRLWDLRAGK  310 (460)
T ss_pred             eEEEe--------------------cCCCC-cceeEEeecCCCceEEecCCceEEEeeeccCc
Confidence            55443                    56777 69999999988889999999999999998864

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=5.1e-28  Score=262.57  Aligned_cols=165  Identities=22%  Similarity=0.371  Sum_probs=139.2

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      ..+...|.++.|+|+  |..+++++.|+.+++|+......        .....+.+|...|.+++|+| ++.++++++.|
T Consensus       156 ~~~~~sv~~~~fs~~--g~~l~~~~~~~~i~~~~~~~~~~--------~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D  224 (456)
T KOG0266|consen  156 GHECPSVTCVDFSPD--GRALAAASSDGLIRIWKLEGIKS--------NLLRELSGHTRGVSDVAFSP-DGSYLLSGSDD  224 (456)
T ss_pred             ccccCceEEEEEcCC--CCeEEEccCCCcEEEeecccccc--------hhhccccccccceeeeEECC-CCcEEEEecCC
Confidence            344789999999999  78999999999999999954221        13566689999999999999 66899999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      ++|++||+....                        ..+....+|...|++++|+|+ ++++++|+.|++|||||+++++
T Consensus       225 ~tiriwd~~~~~------------------------~~~~~l~gH~~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~  279 (456)
T KOG0266|consen  225 KTLRIWDLKDDG------------------------RNLKTLKGHSTYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGE  279 (456)
T ss_pred             ceEEEeeccCCC------------------------eEEEEecCCCCceEEEEecCC-CCEEEEecCCCcEEEEeccCCe
Confidence            999999994442                        123344578999999999998 4999999999999999999976


Q ss_pred             CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ....+                    .+|.+ .|++++|++++.+|++++.|+.|++||+.++
T Consensus       280 ~~~~l--------------------~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~  320 (456)
T KOG0266|consen  280 CVRKL--------------------KGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETG  320 (456)
T ss_pred             EEEee--------------------eccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCC
Confidence            54443                    45666 6999999999999999999999999999985

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.6e-26  Score=206.68  Aligned_cols=223  Identities=17%  Similarity=0.310  Sum_probs=162.7

Q ss_pred             ccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC------C--------eEEEEEccCCCCceEEEEEeeC
Q 004290           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------R--------KLLHSIETGHSANVFCTKFVPE  104 (763)
Q Consensus        39 ~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~------~--------~~~~~~~~~h~~~V~~v~~~p~  104 (763)
                      .+..+.+|. ....|.+++|+|.|.+.|.|+..++.+|--...      +        ..+.+-...|.+.|.|.+|+|.
T Consensus        22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence            345566665 567899999999999999999999999875421      1        1223333578999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC---CCCEEEEEeC-CCcEEEEECCCC
Q 004290          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPHVVWSASE-DGTLRQHDFRQG  180 (763)
Q Consensus       105 ~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~---~~~~l~s~s~-dg~i~iwd~~~~  180 (763)
                        |.+|++|+.|++|++..++......     ..+-..+.-|.+.|..|+|-.+   ++.++++++. |..|++-|...+
T Consensus       101 --geliatgsndk~ik~l~fn~dt~~~-----~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g  173 (350)
T KOG0641|consen  101 --GELIATGSNDKTIKVLPFNADTCNA-----TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG  173 (350)
T ss_pred             --cCeEEecCCCceEEEEecccccccc-----cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence              8999999999999998887543322     1334567789999999999642   3457777664 666777777666


Q ss_pred             CCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEE-EEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004290          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC-DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (763)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~  259 (763)
                      +..                         .-..+|++-|.++ .|+   +-+|++|+.|.+||+||+|-...+.++...  
T Consensus       174 ~~~-------------------------~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~--  223 (350)
T KOG0641|consen  174 QGF-------------------------HALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDND--  223 (350)
T ss_pred             Ccc-------------------------eeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCc--
Confidence            522                         2223455555554 343   569999999999999999976544433211  


Q ss_pred             CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                                  +...|.....|.+|+..|.|++|++|..|....+||++.+
T Consensus       224 ------------~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~  263 (350)
T KOG0641|consen  224 ------------FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG  263 (350)
T ss_pred             ------------ccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC
Confidence                        1223344457999999999999999999999999999874

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=3.3e-28  Score=242.14  Aligned_cols=232  Identities=16%  Similarity=0.239  Sum_probs=173.5

Q ss_pred             cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe----EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (763)
Q Consensus        42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~----~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg  117 (763)
                      ....|++|+..|.++++.|.|-.|+||+.|.+|++||+....    ..+.+.......|.++.|++.  +..|++.+...
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T--g~~iLvvsg~a  236 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT--GDQILVVSGSA  236 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC--CCeEEEEecCc
Confidence            345578999999999999999999999999999999997542    334444455668999999998  67787777788


Q ss_pred             cEEEEECCCCCCCCC--CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290          118 EVRLFNLSRFSGRGL--DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  195 (763)
                      .++|+|-.-......  ....+.-+..-++|...++|.+|+|.+...|+|++.||++++||+...+..           .
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q-----------~  305 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ-----------L  305 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-----------e
Confidence            999999763211000  000112234557899999999999999999999999999999999887632           1


Q ss_pred             EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (763)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (763)
                      .++..+        ...+....+++|+|+|+ +.+||+|+.||.|.+|+.+.......                 +....
T Consensus       306 qVik~k--------~~~g~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~-----------------~~vk~  359 (641)
T KOG0772|consen  306 QVIKTK--------PAGGKRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRPV-----------------MKVKD  359 (641)
T ss_pred             eEEeec--------cCCCcccCceeeecCCC-cchhhhcccCCceeeeecCCcccccc-----------------eEeee
Confidence            111111        11244678899999998 78999999999999999875432211                 11111


Q ss_pred             CCCc-cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          276 GRSS-LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       276 g~~~-~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      .|.. ..|++|.||+||++|++-+.|+++++||++..+
T Consensus       360 AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  360 AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             ccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            2222 249999999999999999999999999999864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=2.4e-27  Score=277.20  Aligned_cols=188  Identities=15%  Similarity=0.242  Sum_probs=142.7

Q ss_pred             CCcEEEEeCCCCeEEEEEc----cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecc
Q 004290           71 DTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH  146 (763)
Q Consensus        71 D~~v~iWd~~~~~~~~~~~----~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h  146 (763)
                      +|.+++|+..+......+.    ..|...|.+++|+|+  +++|++|+.|+.|+||++........  ....+...+. +
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~d--g~~latgg~D~~I~iwd~~~~~~~~~--~~~~~~~~~~-~  531 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRD--GEFFATAGVNKKIKIFECESIIKDGR--DIHYPVVELA-S  531 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCC--CCEEEEEeCCCEEEEEECCccccccc--ccccceEEec-c
Confidence            6788999988765544332    348999999999999  79999999999999999864210000  0011223333 4


Q ss_pred             cCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004290          147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (763)
Q Consensus       147 ~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~  226 (763)
                      ...|.+++|+|..+.+|++++.||+|++||+.+++.                         +....+|...|++++|+|.
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-------------------------~~~~~~H~~~V~~l~~~p~  586 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-------------------------VTEMKEHEKRVWSIDYSSA  586 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE-------------------------EEEecCCCCCEEEEEEcCC
Confidence            567999999987778999999999999999987642                         1222457788999999986


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc-CCCCEEEEEeCCCeEEE
Q 004290          227 RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYL  305 (763)
Q Consensus       227 ~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s-pdg~~l~~~s~d~~i~i  305 (763)
                      ++.+|++|+.|+.|++||++++..+..+                    ..+.  .|.++.|+ ++|.+|++|+.|+.|++
T Consensus       587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~--------------------~~~~--~v~~v~~~~~~g~~latgs~dg~I~i  644 (793)
T PLN00181        587 DPTLLASGSDDGSVKLWSINQGVSIGTI--------------------KTKA--NICCVQFPSESGRSLAFGSADHKVYY  644 (793)
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEEEEE--------------------ecCC--CeEEEEEeCCCCCEEEEEeCCCeEEE
Confidence            5789999999999999999976543222                    1121  48999995 57999999999999999


Q ss_pred             EECCC
Q 004290          306 MDVNH  310 (763)
Q Consensus       306 wd~~~  310 (763)
                      ||+.+
T Consensus       645 wD~~~  649 (793)
T PLN00181        645 YDLRN  649 (793)
T ss_pred             EECCC
Confidence            99876

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.5e-27  Score=218.14  Aligned_cols=228  Identities=16%  Similarity=0.239  Sum_probs=186.0

Q ss_pred             CCcccccccccchhh-hhccccceee-ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEccCCCCceE
Q 004290           22 TRPDVNHSLQMHSSL-VRRLSQEREL-EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVF   97 (763)
Q Consensus        22 ~~~~~~~~~~~~~~~-~~~~~~~~~l-~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~--~~~~~~~~~h~~~V~   97 (763)
                      .+.+.++.+++|+.- ..++.+...| .+|+..|++++|+|.|++||+||.|.++.||.-..+  +++.++ .||...|.
T Consensus        31 Ascg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l-EGHEnEVK  109 (312)
T KOG0645|consen   31 ASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL-EGHENEVK  109 (312)
T ss_pred             EeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee-ecccccee
Confidence            356778999999865 4456777666 479999999999999999999999999999986644  577788 89999999


Q ss_pred             EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004290           98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (763)
Q Consensus        98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~  177 (763)
                      |++|+++  |.+||+|+.|+.|-||.+....       .+++...+..|...|..+.|+| ...+|+|++.|.+|++|+-
T Consensus       110 ~Vaws~s--G~~LATCSRDKSVWiWe~dedd-------Efec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~  179 (312)
T KOG0645|consen  110 CVAWSAS--GNYLATCSRDKSVWIWEIDEDD-------EFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRD  179 (312)
T ss_pred             EEEEcCC--CCEEEEeeCCCeEEEEEecCCC-------cEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEee
Confidence            9999999  8999999999999999998532       2577899999999999999999 5689999999999999986


Q ss_pred             CCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCC
Q 004290          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  257 (763)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~  257 (763)
                      ....                      .-..+....+|...|.+++|+|. |+.|++++.|++++||-..+.-.       
T Consensus       180 ~~dd----------------------dW~c~~tl~g~~~TVW~~~F~~~-G~rl~s~sdD~tv~Iw~~~~~~~-------  229 (312)
T KOG0645|consen  180 EDDD----------------------DWECVQTLDGHENTVWSLAFDNI-GSRLVSCSDDGTVSIWRLYTDLS-------  229 (312)
T ss_pred             cCCC----------------------CeeEEEEecCccceEEEEEecCC-CceEEEecCCcceEeeeeccCcc-------
Confidence            5321                      01122334467778999999997 68999999999999998663210       


Q ss_pred             CCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                                       ..|.. .+..+.|. + ..|++++.|+.|++|.-..
T Consensus       230 -----------------~~~sr-~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  230 -----------------GMHSR-ALYDVPWD-N-GVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             -----------------hhccc-ceEeeeec-c-cceEeccCCCEEEEEEecC
Confidence                             11322 58889998 4 4699999999999996554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.8e-28  Score=258.04  Aligned_cols=161  Identities=12%  Similarity=0.195  Sum_probs=140.8

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      ...+..|-.++|+|.  ...++++-..|.|++||.+.+          .++..|..|.++|+.++|+| .+-+|+|||.|
T Consensus         6 EskSsRvKglsFHP~--rPwILtslHsG~IQlWDYRM~----------tli~rFdeHdGpVRgv~FH~-~qplFVSGGDD   72 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPK--RPWILTSLHSGVIQLWDYRMG----------TLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDD   72 (1202)
T ss_pred             hcccccccceecCCC--CCEEEEeecCceeeeehhhhh----------hHHhhhhccCCccceeeecC-CCCeEEecCCc
Confidence            345678999999999  689999999999999999963          45888999999999999999 55799999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      -+|++|+..+.+                         .+....+|...|..+.|++..+ +|+++|.|.+||||+..+.+
T Consensus        73 ykIkVWnYk~rr-------------------------clftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~  126 (1202)
T KOG0292|consen   73 YKIKVWNYKTRR-------------------------CLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRK  126 (1202)
T ss_pred             cEEEEEecccce-------------------------ehhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCc
Confidence            999999988765                         3455567899999999999854 99999999999999999886


Q ss_pred             CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      .+..+                    .||.. .|.|.+|+|....++++|-|.+|++||+..
T Consensus       127 ~iavl--------------------tGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen  127 CIAVL--------------------TGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             eEEEE--------------------ecCce-EEEeeccCCccceEEEecccceEEEEeecc
Confidence            55443                    56777 499999999999999999999999999977

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=1.7e-27  Score=228.01  Aligned_cols=251  Identities=16%  Similarity=0.193  Sum_probs=193.6

Q ss_pred             CCCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEE
Q 004290           21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK  100 (763)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~  100 (763)
                      ..+++-+..-.+|+  +.+.....++.||++.|+++.||.+|.+||||..+|.|+||+..++.....+ ......|.=+.
T Consensus        79 ~aTGGgDD~AflW~--~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~-~~e~~dieWl~  155 (399)
T KOG0296|consen   79 VATGGGDDLAFLWD--ISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL-DQEVEDIEWLK  155 (399)
T ss_pred             EEecCCCceEEEEE--ccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe-ecccCceEEEE
Confidence            34556667777887  6666789999999999999999999999999999999999999999988888 34556788899


Q ss_pred             EeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 004290          101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (763)
Q Consensus       101 ~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~  180 (763)
                      |+|.  +.+|+.|+.||.|.+|.+...          ...+.+.+|..++++=.|.| +++.++++..||+|++||+.++
T Consensus       156 WHp~--a~illAG~~DGsvWmw~ip~~----------~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg  222 (399)
T KOG0296|consen  156 WHPR--AHILLAGSTDGSVWMWQIPSQ----------ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTG  222 (399)
T ss_pred             eccc--ccEEEeecCCCcEEEEECCCc----------ceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCC
Confidence            9998  899999999999999999863          23678899999999999999 5788999999999999999998


Q ss_pred             CCCCCCC--------------------CCCcccceEEEecCCCceeeccC------CCCCccceEEEE---EeCCCCcEE
Q 004290          181 SSCPPAG--------------------SSHQECRNILLDLRCGAKRSLAD------PPKQTLSLKSCD---ISSTRPHLL  231 (763)
Q Consensus       181 ~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~i~---~~p~~~~~l  231 (763)
                      ++.....                    .+..++...+.....+++.....      .+.+...+.|+.   |+.. -.++
T Consensus       223 ~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~-lpL~  301 (399)
T KOG0296|consen  223 QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSK-LPLA  301 (399)
T ss_pred             ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccc-cchh
Confidence            7642211                    11122333333333333322222      123333344444   4443 3478


Q ss_pred             EEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          232 LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       232 ~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      |+|+-||+|-|||+...+....+.                     |.. .|+.+.|-+ ..+|++++.+|.|++||.+++
T Consensus       302 A~G~vdG~i~iyD~a~~~~R~~c~---------------------he~-~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG  358 (399)
T KOG0296|consen  302 ACGSVDGTIAIYDLAASTLRHICE---------------------HED-GVTKLKWLN-TDYLLTACANGKVRQWDARTG  358 (399)
T ss_pred             hcccccceEEEEecccchhheecc---------------------CCC-ceEEEEEcC-cchheeeccCceEEeeecccc
Confidence            999999999999999766443331                     444 499999999 789999999999999999985

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.96  E-value=1.2e-27  Score=236.13  Aligned_cols=249  Identities=18%  Similarity=0.247  Sum_probs=213.0

Q ss_pred             CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~  102 (763)
                      ++.++..+++|.   ....++.+|..|+++|.+|.|+.+|++|++++.|+++.|||..+++....+ .-|..+-..+.|-
T Consensus       252 tG~~~G~~riw~---~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW~  327 (524)
T KOG0273|consen  252 TGSEDGEARIWN---KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPALDVDWQ  327 (524)
T ss_pred             EeecCcEEEEEe---cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee-eeccCCccceEEe
Confidence            466788888887   567788899999999999999999999999999999999999999988888 6788887889998


Q ss_pred             eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      .+   .-|++++.|+.|+++.+..          ..|..++.+|.++|.+|.|+| .+.+|+|++.|++++||...... 
T Consensus       328 ~~---~~F~ts~td~~i~V~kv~~----------~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~-  392 (524)
T KOG0273|consen  328 SN---DEFATSSTDGCIHVCKVGE----------DRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSN-  392 (524)
T ss_pred             cC---ceEeecCCCceEEEEEecC----------CCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCc-
Confidence            76   7899999999999999986          367899999999999999999 66999999999999999977654 


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC--------CcEEEEEeCCCcEEEEeCCCCCCCccc
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--------PHLLLVGGSDAFARLYDRRMLPPLTSC  254 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~--------~~~l~sgs~Dg~i~iwd~~~~~~~~~~  254 (763)
                                              .+..+..|...|+.+.|+|.+        +..+++++.|++|++||+..+.++.++
T Consensus       393 ------------------------~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f  448 (524)
T KOG0273|consen  393 ------------------------SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL  448 (524)
T ss_pred             ------------------------chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee
Confidence                                    233445677788888888863        458999999999999999999877655


Q ss_pred             CCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCC
Q 004290          255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN  334 (763)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~  334 (763)
                                          ..|.. +|.+|+|+|+|+||++|+.||.|.+|++++++ ....+..+..+..++|+....
T Consensus       449 --------------------~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~-l~~s~~~~~~Ifel~Wn~~G~  506 (524)
T KOG0273|consen  449 --------------------MKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK-LVKSYQGTGGIFELCWNAAGD  506 (524)
T ss_pred             --------------------ccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchh-eeEeecCCCeEEEEEEcCCCC
Confidence                                23444 69999999999999999999999999999954 566666677788899988765


Q ss_pred             Cc
Q 004290          335 GL  336 (763)
Q Consensus       335 ~~  336 (763)
                      .+
T Consensus       507 kl  508 (524)
T KOG0273|consen  507 KL  508 (524)
T ss_pred             EE
Confidence            44

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=1e-26  Score=244.32  Aligned_cols=257  Identities=15%  Similarity=0.198  Sum_probs=194.0

Q ss_pred             cccccccchhhhhccccceeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeC
Q 004290           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (763)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~  104 (763)
                      .+.++.+..  ++..+.+.+|+...+.|+.++|..||+ +||+|+..|.+-+||++..+.+..+...|.+.|....|.|.
T Consensus       222 ~~G~ViifN--lK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~  299 (910)
T KOG1539|consen  222 ENGTVIIFN--LKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG  299 (910)
T ss_pred             cCceEEEEE--cccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC
Confidence            456666665  677788888885569999999999996 67788888999999999999888886789999999999998


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 004290          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  184 (763)
Q Consensus       105 ~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~  184 (763)
                        ...+++++.|+.+++|=..++++..      +.++.-.+|..+..+|.|.-..+..+.+++.|++.+.+++.....-.
T Consensus       300 --epVl~ta~~DnSlk~~vfD~~dg~p------R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~  371 (910)
T KOG1539|consen  300 --EPVLVTAGADNSLKVWVFDSGDGVP------RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ  371 (910)
T ss_pred             --CceEeeccCCCceeEEEeeCCCCcc------hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence              6999999999999999888766643      45777789999999999997688999999999999999876532210


Q ss_pred             CCCC------------C-----------------------------C-cccceEEEecCCCceeeccC----CCCCccce
Q 004290          185 PAGS------------S-----------------------------H-QECRNILLDLRCGAKRSLAD----PPKQTLSL  218 (763)
Q Consensus       185 ~~~~------------~-----------------------------~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~v  218 (763)
                      ....            .                             | .......|..+........-    +..-...+
T Consensus       372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~  451 (910)
T KOG1539|consen  372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINA  451 (910)
T ss_pred             hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcce
Confidence            0000            0                             0 01111223333222211111    11133568


Q ss_pred             EEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 004290          219 KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY  298 (763)
Q Consensus       219 ~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s  298 (763)
                      ++++.++. |+..+.|.+.|.|-+|++++|-...++...                 ..|.. +|++|+...-++.+++++
T Consensus       452 ~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~-----------------~ah~~-~V~gla~D~~n~~~vsa~  512 (910)
T KOG1539|consen  452 TAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSFGDS-----------------PAHKG-EVTGLAVDGTNRLLVSAG  512 (910)
T ss_pred             EEEEEecc-CceEEEeccCCeEEEEEcccCeeecccccC-----------------ccccC-ceeEEEecCCCceEEEcc
Confidence            89999997 799999999999999999988654443200                 12444 699999999999999999


Q ss_pred             CCCeEEEEECCCC
Q 004290          299 SGEHVYLMDVNHA  311 (763)
Q Consensus       299 ~d~~i~iwd~~~~  311 (763)
                      .+|.+++||....
T Consensus       513 ~~Gilkfw~f~~k  525 (910)
T KOG1539|consen  513 ADGILKFWDFKKK  525 (910)
T ss_pred             CcceEEEEecCCc
Confidence            9999999999884

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.96  E-value=2e-27  Score=242.54  Aligned_cols=235  Identities=20%  Similarity=0.257  Sum_probs=160.3

Q ss_pred             ccCceEE--EEeCC---CCCEEEEEeCCCcEEEEeCCCCeE------EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290           49 HQGCVNA--ISWNS---KGSLLISGSDDTHINVWSYSSRKL------LHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (763)
Q Consensus        49 H~~~V~~--l~fsp---~g~~Lasgs~D~~v~iWd~~~~~~------~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg  117 (763)
                      |.-++.-  ..|++   ...+||.+.+||.|.++|......      ++.. ..|...|+.+.|.|.  ..+|++++.|.
T Consensus        46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapg--e~~lVsasGDs  122 (720)
T KOG0321|consen   46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPG--ESLLVSASGDS  122 (720)
T ss_pred             CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCC--ceeEEEccCCc
Confidence            4444444  67765   346899999999999999865322      2333 689999999999996  78999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  197 (763)
                      ++++||+.......        ...+.+|.+.|.+++|.|.++..|++|+.||.|.|||++-...-..    ...+ +.+
T Consensus       123 T~r~Wdvk~s~l~G--------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~----e~~~-~~~  189 (720)
T KOG0321|consen  123 TIRPWDVKTSRLVG--------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL----EEFD-NRI  189 (720)
T ss_pred             eeeeeeeccceeec--------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH----HHHh-hhh
Confidence            99999999743221        3348899999999999999999999999999999999997652100    0001 111


Q ss_pred             EecCCC-------ceeeccCCCCCccceEE---EEEeCCCCcEEEEEeC-CCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004290          198 LDLRCG-------AKRSLADPPKQTLSLKS---CDISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (763)
Q Consensus       198 ~~~~~~-------~~~~~~~~~~~~~~v~~---i~~~p~~~~~l~sgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (763)
                      ++...+       ..+.+.....+...|.+   +.+..| ...||+++. |+.|+|||++...........    . ...
T Consensus       190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~----~-~~~  263 (720)
T KOG0321|consen  190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD-ESTLASAGAADSTIKVWDLRKNYTAYRQEPR----G-SDK  263 (720)
T ss_pred             hccccCCCCCCchhhccccccccccCceeeeeEEEEEec-cceeeeccCCCcceEEEeecccccccccCCC----c-ccC
Confidence            111111       01112222233333333   344444 468888887 999999999987654332211    0 111


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      + +.    +......+++++....|.+|++.+.|+.|++|++.+
T Consensus       264 ~-~t----~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s  302 (720)
T KOG0321|consen  264 Y-PT----HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS  302 (720)
T ss_pred             c-cC----cccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence            1 01    112223588899999999999999999999999988

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=2.5e-26  Score=210.94  Aligned_cols=237  Identities=20%  Similarity=0.319  Sum_probs=191.0

Q ss_pred             eeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (763)
Q Consensus        45 ~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~  124 (763)
                      .|+||+.+++.+.++.+|.+|+|++.|.++.||=..+|+.+.++ .||.+.|+|++..-+  .+.+++|+.|.++++||+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~--s~~liTGSAD~t~kLWDv   81 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWD--SKHLITGSADQTAKLWDV   81 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCC--cceeeeccccceeEEEEc
Confidence            47899999999999999999999999999999999999999999 899999999999998  599999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-----CCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-----EDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      .+++          .+..++ -..+|..+.|++ ++++++.+.     ..+.|.++|++......    ...+       
T Consensus        82 ~tGk----------~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~----~s~e-------  138 (327)
T KOG0643|consen   82 ETGK----------QLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDI----DSEE-------  138 (327)
T ss_pred             CCCc----------EEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhh----cccC-------
Confidence            9853          255554 567899999999 556665554     34689999998654110    0000       


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                             ++...+.+...++.+-|.|. ++.|++|..||.|.+||+++++.+-...                   ..|..
T Consensus       139 -------p~~kI~t~~skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g~~~v~s~-------------------~~h~~  191 (327)
T KOG0643|consen  139 -------PYLKIPTPDSKITSALWGPL-GETIIAGHEDGSISIYDARTGKELVDSD-------------------EEHSS  191 (327)
T ss_pred             -------ceEEecCCccceeeeeeccc-CCEEEEecCCCcEEEEEcccCceeeech-------------------hhhcc
Confidence                   01111223467899999997 6899999999999999999975432110                   22444


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCCCc
Q 004290          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL  336 (763)
Q Consensus       280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  336 (763)
                       .|+.++++||..++++++.|.+-++||+.+ -..+..+....+++..+++|...-+
T Consensus       192 -~Ind~q~s~d~T~FiT~s~Dttakl~D~~t-l~v~Kty~te~PvN~aaisP~~d~V  246 (327)
T KOG0643|consen  192 -KINDLQFSRDRTYFITGSKDTTAKLVDVRT-LEVLKTYTTERPVNTAAISPLLDHV  246 (327)
T ss_pred             -ccccccccCCcceEEecccCccceeeeccc-eeeEEEeeecccccceecccccceE
Confidence             599999999999999999999999999999 5677888888899999999965443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.7e-27  Score=212.38  Aligned_cols=250  Identities=22%  Similarity=0.286  Sum_probs=210.2

Q ss_pred             CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~  102 (763)
                      +.+.++.+++|.  ..+..+++++.||...|..++.+.|...+++|+.|+.|.+||+.+|+.++.+ .+|.+.|+.++|+
T Consensus        34 tcGsdrtvrLWN--p~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fN  110 (307)
T KOG0316|consen   34 TCGSDRTVRLWN--PLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFN  110 (307)
T ss_pred             EcCCCceEEeec--ccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEec
Confidence            367789999998  5667899999999999999999999999999999999999999999999999 8999999999999


Q ss_pred             eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      .+  ...+++|+.|.++++||.+...        .+|++.+....+.|.++...   ++.|++|+.||+++.||+|.++.
T Consensus       111 ee--sSVv~SgsfD~s~r~wDCRS~s--------~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l  177 (307)
T KOG0316|consen  111 EE--SSVVASGSFDSSVRLWDCRSRS--------FEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTL  177 (307)
T ss_pred             Cc--ceEEEeccccceeEEEEcccCC--------CCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeeccee
Confidence            98  6999999999999999999744        47799999999999999985   37899999999999999999874


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (763)
                      ..                           .....+|++++|+++ ++..++++.|+++|+.|..+++.+..+        
T Consensus       178 ~s---------------------------Dy~g~pit~vs~s~d-~nc~La~~l~stlrLlDk~tGklL~sY--------  221 (307)
T KOG0316|consen  178 SS---------------------------DYFGHPITSVSFSKD-GNCSLASSLDSTLRLLDKETGKLLKSY--------  221 (307)
T ss_pred             eh---------------------------hhcCCcceeEEecCC-CCEEEEeeccceeeecccchhHHHHHh--------
Confidence            31                           012357999999997 789999999999999999999876554        


Q ss_pred             cccccccccccCCCCCcc-ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCC-CeeeeeccCCCCc
Q 004290          263 CVNYFCPMHLSEHGRSSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA-SKIMSFTPTLNGL  336 (763)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~-~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~  336 (763)
                                  .||.+. .-...++......+++|+.||.|++||+...........++.+ +..++++|.....
T Consensus       222 ------------kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f  285 (307)
T KOG0316|consen  222 ------------KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDF  285 (307)
T ss_pred             ------------cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccce
Confidence                        333321 2445667777789999999999999999996655544444444 5678888865544

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.1e-25  Score=242.97  Aligned_cols=212  Identities=15%  Similarity=0.127  Sum_probs=162.2

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEE-------------EEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004290           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-------------SIETGHSANVFCTKFVPETSDELVVSGAG  115 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~-------------~~~~~h~~~V~~v~~~p~~~~~~l~s~s~  115 (763)
                      |-..|+....++++..+++++.+..+..|+...+..+.             .+ .+|.+.|++++|+|.. +.+|++|+.
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d-~~~LaSgS~   96 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFD-PQKLFTASE   96 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCC-CCEEEEEeC
Confidence            34456667777887778888888888888865544321             23 6899999999999932 689999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (763)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  195 (763)
                      |++|++||+......   .....++..+.+|...|.+++|+|.+.++|++++.|++|++||+++++..            
T Consensus        97 DgtIkIWdi~~~~~~---~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~------------  161 (493)
T PTZ00421         97 DGTIMGWGIPEEGLT---QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV------------  161 (493)
T ss_pred             CCEEEEEecCCCccc---cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE------------
Confidence            999999999753210   01124567889999999999999976689999999999999999876521            


Q ss_pred             EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (763)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (763)
                                   .....|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+                    .
T Consensus       162 -------------~~l~~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v~tl--------------------~  207 (493)
T PTZ00421        162 -------------EVIKCHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSV--------------------E  207 (493)
T ss_pred             -------------EEEcCCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEEEEE--------------------e
Confidence                         112346678999999997 789999999999999999987644322                    2


Q ss_pred             CCCccceeEEEEcCCCCEEEEEe----CCCeEEEEECCCC
Q 004290          276 GRSSLHLTHVTFSPNGEEVLLSY----SGEHVYLMDVNHA  311 (763)
Q Consensus       276 g~~~~~i~~v~~spdg~~l~~~s----~d~~i~iwd~~~~  311 (763)
                      +|....+..+.|.+++..|++++    .|+.|++||+++.
T Consensus       208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~  247 (493)
T PTZ00421        208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM  247 (493)
T ss_pred             cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence            34433356788999988887764    3799999999873

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.2e-26  Score=217.50  Aligned_cols=224  Identities=23%  Similarity=0.310  Sum_probs=184.8

Q ss_pred             hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (763)
Q Consensus        38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg  117 (763)
                      -+..++++|.||+++|+.++-......+.+++.|.+.+||.++++.|+.++ .||.+.|++++|++.  +.++++++.|+
T Consensus       136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s--~~L~lTaSGD~  212 (481)
T KOG0300|consen  136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNS--GLLLLTASGDE  212 (481)
T ss_pred             eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-cccccceeeEEeccc--cceEEEccCCc
Confidence            456788999999999999999888889999999999999999999999999 899999999999998  79999999999


Q ss_pred             cEEEEECC----CCCCCC-------------------CC------C-CCCCCceeeecccCceeEEEEecCCCCEEEEEe
Q 004290          118 EVRLFNLS----RFSGRG-------------------LD------D-NAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  167 (763)
Q Consensus       118 ~I~iwd~~----~~~~~~-------------------~~------~-~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s  167 (763)
                      +.+||...    .++...                   .+      . .-..|+..+.+|...|.+..|-. ++..+++++
T Consensus       213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaS  291 (481)
T KOG0300|consen  213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTAS  291 (481)
T ss_pred             chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeee
Confidence            99999822    111000                   00      0 01235677889999999999988 788999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                      .|.+..+||+++++..                         ....+|...++.++-+|. ..++++++.|-+.|+||++.
T Consensus       292 WDRTAnlwDVEtge~v-------------------------~~LtGHd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFRe  345 (481)
T KOG0300|consen  292 WDRTANLWDVETGEVV-------------------------NILTGHDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFRE  345 (481)
T ss_pred             ccccceeeeeccCcee-------------------------ccccCcchhccccccCCc-ceEEEEeccCceeEeccchh
Confidence            9999999999998743                         333467778888999997 57899999999999999993


Q ss_pred             CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      .  +          ..+..|       +||.. .|+++.|..+.+ +++|+.|.+|++||+++..
T Consensus       346 a--I----------~sV~VF-------QGHtd-tVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  346 A--I----------QSVAVF-------QGHTD-TVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMR  389 (481)
T ss_pred             h--c----------ceeeee-------ccccc-ceeEEEEecCCc-eeecCCCceEEEeeecccc
Confidence            2  1          123333       67877 599999998866 8999999999999999854

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.3e-26  Score=214.78  Aligned_cols=202  Identities=12%  Similarity=0.172  Sum_probs=156.4

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004290           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  132 (763)
Q Consensus        53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~  132 (763)
                      -+|+.|++.|.+||+|..||.|.|||+.|...-+.+ .+|..+|.+++|+++  |++|+|+|.|..|.+||+..+.    
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~gs----   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKGS----   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCC--CCEeeeecCCceeEEEeccCCC----
Confidence            789999999999999999999999999998765556 899999999999999  8999999999999999999743    


Q ss_pred             CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCC
Q 004290          133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  212 (763)
Q Consensus       133 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (763)
                            +++.+. ...+|....|+|.+.+.++++-.+..-.+-++..++...             ..  ......     
T Consensus        99 ------~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~-------------Lp--~d~d~d-----  151 (405)
T KOG1273|consen   99 ------PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV-------------LP--KDDDGD-----  151 (405)
T ss_pred             ------ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee-------------cc--CCCccc-----
Confidence                  355554 678999999999887887777777666677766543210             00  000000     


Q ss_pred             CCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCC
Q 004290          213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  292 (763)
Q Consensus       213 ~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~  292 (763)
                       ......+..|.+. |+++++|...|.+.+||..+.+.+..+...                    ....|..+.|+..|+
T Consensus       152 -ln~sas~~~fdr~-g~yIitGtsKGkllv~~a~t~e~vas~rit--------------------s~~~IK~I~~s~~g~  209 (405)
T KOG1273|consen  152 -LNSSASHGVFDRR-GKYIITGTSKGKLLVYDAETLECVASFRIT--------------------SVQAIKQIIVSRKGR  209 (405)
T ss_pred             -cccccccccccCC-CCEEEEecCcceEEEEecchheeeeeeeec--------------------hheeeeEEEEeccCc
Confidence             0111122357775 899999999999999999988655443211                    111488999999999


Q ss_pred             EEEEEeCCCeEEEEECCC
Q 004290          293 EVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       293 ~l~~~s~d~~i~iwd~~~  310 (763)
                      .|+..+.|..|+.|++..
T Consensus       210 ~liiNtsDRvIR~ye~~d  227 (405)
T KOG1273|consen  210 FLIINTSDRVIRTYEISD  227 (405)
T ss_pred             EEEEecCCceEEEEehhh
Confidence            999999999999999875

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.8e-26  Score=250.84  Aligned_cols=237  Identities=15%  Similarity=0.222  Sum_probs=180.4

Q ss_pred             cCceEEEEeCCCCCEEEEEe--CCCcEEEEeCCC------------CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004290           50 QGCVNAISWNSKGSLLISGS--DDTHINVWSYSS------------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs--~D~~v~iWd~~~------------~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~  115 (763)
                      ...|.+++.+|+|..+|||+  .|+.++||+.+.            .+.+..+ ..|.+.|+|+.|+|+  |.+||+|+.
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~d--G~~lAsGSD   89 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPD--GSYLASGSD   89 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCC--CCeEeeccC
Confidence            56699999999999999999  899999998652            2344555 689999999999999  899999999


Q ss_pred             CCcEEEEECCCC-C-------CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290          116 DAEVRLFNLSRF-S-------GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG  187 (763)
Q Consensus       116 dg~I~iwd~~~~-~-------~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  187 (763)
                      |+.|.||..... .       +.......++....+.+|...|..++|+| ++.++++++.|++|.+||.++.+.     
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~-----  163 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFEL-----  163 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcccccee-----
Confidence            999999998831 0       11223344667888999999999999999 679999999999999999998742     


Q ss_pred             CCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccc
Q 004290          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (763)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  267 (763)
                                          +....+|...|..+.|+|- |++||+-+.|++|+||+..+......+..+.         
T Consensus       164 --------------------~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf---------  213 (942)
T KOG0973|consen  164 --------------------LKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPF---------  213 (942)
T ss_pred             --------------------eeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccch---------
Confidence                                2334568889999999998 7999999999999999977644333222111         


Q ss_pred             ccccccCCCCCccceeEEEEcCCCCEEEEEeC----CCeEEEEECCCCCccceEeecCCCCeeeeecc
Q 004290          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (763)
Q Consensus       268 ~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (763)
                           ...+... .+..+.|||||.+|++...    -.++.|.+-.+-+......+|..+..++.|+|
T Consensus       214 -----~~~~~~T-~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP  275 (942)
T KOG0973|consen  214 -----EESPLTT-FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNP  275 (942)
T ss_pred             -----hhCCCcc-eeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeCh
Confidence                 1111111 4888999999999998754    23566666555444555556666666666666

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=8.5e-26  Score=232.28  Aligned_cols=163  Identities=25%  Similarity=0.392  Sum_probs=131.6

Q ss_pred             EEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEE
Q 004290           87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA  166 (763)
Q Consensus        87 ~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~  166 (763)
                      ++ .+|..+|.+++|+|+  +++|++++.||.|++|++...          .....+..|...+..+.|+| ++.+++++
T Consensus         4 ~~-~~h~~~i~~~~~~~~--~~~l~~~~~~g~i~i~~~~~~----------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~   69 (289)
T cd00200           4 TL-KGHTGGVTCVAFSPD--GKLLATGSGDGTIKVWDLETG----------ELLRTLKGHTGPVRDVAASA-DGTYLASG   69 (289)
T ss_pred             Hh-cccCCCEEEEEEcCC--CCEEEEeecCcEEEEEEeeCC----------CcEEEEecCCcceeEEEECC-CCCEEEEE
Confidence            44 589999999999999  799999999999999999863          23567778999999999999 55789999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004290          167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (763)
Q Consensus       167 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~  246 (763)
                      +.||.|++||+..++..                         .....+...+.++.|+|+ +.++++++.|+.|++||++
T Consensus        70 ~~~~~i~i~~~~~~~~~-------------------------~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~  123 (289)
T cd00200          70 SSDKTIRLWDLETGECV-------------------------RTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVE  123 (289)
T ss_pred             cCCCeEEEEEcCcccce-------------------------EEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECC
Confidence            99999999999875421                         111234567999999997 6788888889999999998


Q ss_pred             CCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      +++....+                    .+|.. .|++++|+|++.++++++.|+.|++||+.+
T Consensus       124 ~~~~~~~~--------------------~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~  166 (289)
T cd00200         124 TGKCLTTL--------------------RGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRT  166 (289)
T ss_pred             CcEEEEEe--------------------ccCCC-cEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence            65433222                    12333 599999999999888888899999999875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.3e-26  Score=238.21  Aligned_cols=242  Identities=16%  Similarity=0.230  Sum_probs=198.2

Q ss_pred             CCCCchhhhhhccccCCCc-ccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004290            6 FHDGSIYDMLDTRHTDTRP-DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL   84 (763)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~   84 (763)
                      +-+++++.|+.+-..+.-+ .....+.+|+........+..+.  ...|+++.|+++|.+||+|..+|.|.|||..+.+.
T Consensus       174 l~dDfY~nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~  251 (484)
T KOG0305|consen  174 LQDDFYLNLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK  251 (484)
T ss_pred             ccccHhhhHhhcccCCeEEEEecceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc
Confidence            4567777777777554433 35568899997777766655554  88999999999999999999999999999999999


Q ss_pred             EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEE
Q 004290           85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW  164 (763)
Q Consensus        85 ~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~  164 (763)
                      +..+...|...|-+++|..    ..+.+|+.|+.|.++|++..+.         ....+.+|...|..+.|++ ++.+++
T Consensus       252 ~~~~~~~h~~rvg~laW~~----~~lssGsr~~~I~~~dvR~~~~---------~~~~~~~H~qeVCgLkws~-d~~~lA  317 (484)
T KOG0305|consen  252 TRTLRGSHASRVGSLAWNS----SVLSSGSRDGKILNHDVRISQH---------VVSTLQGHRQEVCGLKWSP-DGNQLA  317 (484)
T ss_pred             cccccCCcCceeEEEeccC----ceEEEecCCCcEEEEEEecchh---------hhhhhhcccceeeeeEECC-CCCeec
Confidence            9999433999999999993    5899999999999999997542         2335889999999999999 679999


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe--CCCcEEE
Q 004290          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARL  242 (763)
Q Consensus       165 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs--~Dg~i~i  242 (763)
                      +|+.|+.+.|||.....+.                         .....|...|.+++|+|-...+||+|+  .|+.|++
T Consensus       318 SGgnDN~~~Iwd~~~~~p~-------------------------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f  372 (484)
T KOG0305|consen  318 SGGNDNVVFIWDGLSPEPK-------------------------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF  372 (484)
T ss_pred             cCCCccceEeccCCCcccc-------------------------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence            9999999999999555422                         222357899999999999889999975  7999999


Q ss_pred             EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC--CCeEEEEECCC
Q 004290          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS--GEHVYLMDVNH  310 (763)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~--d~~i~iwd~~~  310 (763)
                      ||..++..+..+                      ..+..|.+|.|++..+.|+++..  ++.|.||+..+
T Consensus       373 wn~~~g~~i~~v----------------------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps  420 (484)
T KOG0305|consen  373 WNTNTGARIDSV----------------------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS  420 (484)
T ss_pred             EEcCCCcEeccc----------------------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence            999988766443                      22336999999999988887765  77899998776

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.5e-27  Score=215.05  Aligned_cols=228  Identities=18%  Similarity=0.293  Sum_probs=193.9

Q ss_pred             cccccccccchhhhhccccceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~  102 (763)
                      ..-+..+++|+ ....-++++.+++|+..|.++.|++ ++..++++|.|++|+||+...+..+.++ .+|...|....|+
T Consensus        79 a~GDGSLrl~d-~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~s  156 (311)
T KOG0277|consen   79 ASGDGSLRLFD-LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFS  156 (311)
T ss_pred             EecCceEEEec-cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecC
Confidence            44578999999 5556679999999999999999998 5667888899999999999999999999 8999999999999


Q ss_pred             eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      |.. .+++++++.|+++++||++.+.         + ...+..|...|.++.|+..+..+++||+.|+.|++||+|.-+.
T Consensus       157 p~~-~nlfas~Sgd~~l~lwdvr~~g---------k-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~  225 (311)
T KOG0277|consen  157 PHI-PNLFASASGDGTLRLWDVRSPG---------K-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT  225 (311)
T ss_pred             CCC-CCeEEEccCCceEEEEEecCCC---------c-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc
Confidence            986 8999999999999999998752         2 2348889999999999998999999999999999999998763


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (763)
                      +                        +....+|...|..++|+|....+|++++.|-++||||.......           
T Consensus       226 p------------------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~-----------  270 (311)
T KOG0277|consen  226 P------------------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA-----------  270 (311)
T ss_pred             c------------------------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh-----------
Confidence            2                        44446789999999999998899999999999999999854422           


Q ss_pred             cccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 004290          263 CVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDV  308 (763)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s~d~~i~iwd~  308 (763)
                       +.+.       ..|.. -+..+.|++ ++.++++.+.|+.++||+.
T Consensus       271 -~e~~-------~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  271 -IETV-------DHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             -hhhh-------hccce-EEeccccccccCceeeecccccceeeecc
Confidence             1111       12333 589999997 5678899999999999984

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.3e-25  Score=230.88  Aligned_cols=195  Identities=18%  Similarity=0.284  Sum_probs=156.5

Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290           54 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  133 (763)
Q Consensus        54 ~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~  133 (763)
                      +-+.|+ ..+.||.|.. ..|.+|+..++...... ..+...|+++.|+++  |.+|+.|..+|.|.|||....      
T Consensus       181 nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~-~~~~~~vtSv~ws~~--G~~LavG~~~g~v~iwD~~~~------  249 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVTELC-SFGEELVTSVKWSPD--GSHLAVGTSDGTVQIWDVKEQ------  249 (484)
T ss_pred             hHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeE-ecCCCceEEEEECCC--CCEEEEeecCCeEEEEehhhc------
Confidence            346777 4556777654 58999999998865555 334899999999999  899999999999999999863      


Q ss_pred             CCCCCCceeeec-ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCC
Q 004290          134 DNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  212 (763)
Q Consensus       134 ~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (763)
                          +.+..+.+ |...|-+++|.   ...+.+|+.|+.|..+|++..+...                        ....
T Consensus       250 ----k~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~------------------------~~~~  298 (484)
T KOG0305|consen  250 ----KKTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVV------------------------STLQ  298 (484)
T ss_pred             ----cccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhh------------------------hhhh
Confidence                23566777 99999999997   4688899999999999999886431                        1245


Q ss_pred             CCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC-CC
Q 004290          213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NG  291 (763)
Q Consensus       213 ~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg  291 (763)
                      +|...|..+.|+++ +.+||+|+.|+.+.|||.....+...+                    .+|.. .|.+++|+| ..
T Consensus       299 ~H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~~~~p~~~~--------------------~~H~a-AVKA~awcP~q~  356 (484)
T KOG0305|consen  299 GHRQEVCGLKWSPD-GNQLASGGNDNVVFIWDGLSPEPKFTF--------------------TEHTA-AVKALAWCPWQS  356 (484)
T ss_pred             cccceeeeeEECCC-CCeeccCCCccceEeccCCCccccEEE--------------------eccce-eeeEeeeCCCcc
Confidence            68889999999998 799999999999999999655433322                    34655 699999999 45


Q ss_pred             CEEEEEeC--CCeEEEEECCCCC
Q 004290          292 EEVLLSYS--GEHVYLMDVNHAG  312 (763)
Q Consensus       292 ~~l~~~s~--d~~i~iwd~~~~~  312 (763)
                      ..||+|+.  |++|++||+.++.
T Consensus       357 ~lLAsGGGs~D~~i~fwn~~~g~  379 (484)
T KOG0305|consen  357 GLLATGGGSADRCIKFWNTNTGA  379 (484)
T ss_pred             CceEEcCCCcccEEEEEEcCCCc
Confidence            66777765  9999999999853

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.9e-25  Score=230.43  Aligned_cols=205  Identities=20%  Similarity=0.268  Sum_probs=166.0

Q ss_pred             ccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEccCCCCceEE-EEEeeCCCCcEEEEEeCC
Q 004290           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-SIETGHSANVFC-TKFVPETSDELVVSGAGD  116 (763)
Q Consensus        39 ~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~-~~~~~h~~~V~~-v~~~p~~~~~~l~s~s~d  116 (763)
                      .+++.++|.||...|..+++.+.. .++++|.||++++|+-..++.+. ....+|.+-|.+ ++|.+. ++-.+++|+.|
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~-~~~~l~~g~~D   80 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES-DKGRLVVGGMD   80 (745)
T ss_pred             cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccc-cCcceEeeccc
Confidence            357788999999999999987544 78899999999999986665443 223677777777 888873 25679999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (763)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  196 (763)
                      .+|.+|....          ..|+..+++|...|.+++... ++. ++|||.|.++++|-...-.               
T Consensus        81 ~~i~v~~~~~----------~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~l~---------------  133 (745)
T KOG0301|consen   81 TTIIVFKLSQ----------AEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGELV---------------  133 (745)
T ss_pred             ceEEEEecCC----------CCchhhhhccccceeeeecCC-cCc-eEecccccceEEecchhhh---------------
Confidence            9999999986          367999999999999998765 334 8899999999999764421               


Q ss_pred             EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (763)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (763)
                                  ...++|...|.++++-|.  +.+++||.|.+|++|.-.+               ++++|       .|
T Consensus       134 ------------~~l~gH~asVWAv~~l~e--~~~vTgsaDKtIklWk~~~---------------~l~tf-------~g  177 (745)
T KOG0301|consen  134 ------------YSLQGHTASVWAVASLPE--NTYVTGSADKTIKLWKGGT---------------LLKTF-------SG  177 (745)
T ss_pred             ------------cccCCcchheeeeeecCC--CcEEeccCcceeeeccCCc---------------hhhhh-------cc
Confidence                        224679999999999996  3999999999999997642               23343       56


Q ss_pred             CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      |.+ .|+.+++-+++. +++++.||.|++|++..
T Consensus       178 HtD-~VRgL~vl~~~~-flScsNDg~Ir~w~~~g  209 (745)
T KOG0301|consen  178 HTD-CVRGLAVLDDSH-FLSCSNDGSIRLWDLDG  209 (745)
T ss_pred             chh-heeeeEEecCCC-eEeecCCceEEEEeccC
Confidence            777 499999999865 78999999999999844

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.9e-25  Score=241.01  Aligned_cols=231  Identities=17%  Similarity=0.275  Sum_probs=174.8

Q ss_pred             eeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCe-------EEEEEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004290           44 RELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (763)
Q Consensus        44 ~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~-------~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~  115 (763)
                      ..|.||.+.|++++|+| ++++||+|+.|++|+|||+.++.       .+..+ .+|...|.+++|+|.. +.+|++++.
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~-~~iLaSgs~  146 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSA-MNVLASAGA  146 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCC-CCEEEEEeC
Confidence            35889999999999999 88999999999999999997652       45566 7999999999999984 579999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (763)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  195 (763)
                      |++|+|||+.++          ..+..+.+|...|.+++|+| ++.+|++++.|++|++||+++++..            
T Consensus       147 DgtVrIWDl~tg----------~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v------------  203 (493)
T PTZ00421        147 DMVVNVWDVERG----------KAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIV------------  203 (493)
T ss_pred             CCEEEEEECCCC----------eEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEE------------
Confidence            999999999863          33667888999999999999 6789999999999999999987522            


Q ss_pred             EEEecCCCceeeccCCCCCcc-ceEEEEEeCCCCcEEEEEe----CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccc
Q 004290          196 ILLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVGG----SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  270 (763)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~~l~sgs----~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (763)
                        .           ....|.. .+..+.|.++. ..+++++    .|+.|++||+++......            ..   
T Consensus       204 --~-----------tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~~------------~~---  254 (493)
T PTZ00421        204 --S-----------SVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASPYS------------TV---  254 (493)
T ss_pred             --E-----------EEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCcee------------Ee---
Confidence              0           0112222 23466788874 4555543    479999999987542110            00   


Q ss_pred             cccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCCccce-EeecCCCCeeeeeccC
Q 004290          271 HLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTPT  332 (763)
Q Consensus       271 ~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~p~  332 (763)
                          ..+....+....|++++.+|++++ .|+.|++||+.++..... .+....+.+.++|.|.
T Consensus       255 ----~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        255 ----DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             ----ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence                011112366678999999999888 499999999998653222 2334556777888875

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=1.2e-25  Score=242.66  Aligned_cols=219  Identities=26%  Similarity=0.352  Sum_probs=181.5

Q ss_pred             cccccccccchhhhhcccccee-eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290           24 PDVNHSLQMHSSLVRRLSQERE-LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~-l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~  102 (763)
                      ...+..|++|+  ......+.. |.||.+.|.+++|..-+.+|++|+.|.+++|||+.+|++.+.+ .+|.+.|.++...
T Consensus       224 ~s~~~tl~~~~--~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~  300 (537)
T KOG0274|consen  224 GSDDSTLHLWD--LNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTID  300 (537)
T ss_pred             cCCCceeEEee--cccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEcc
Confidence            44567777777  333445555 9999999999999887899999999999999999999999999 7999999999888


Q ss_pred             eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      +.    .+++|+.|.+|++|+++++          ..+..+.+|.++|++|..+   +.++++|+.|++|++||+++.+.
T Consensus       301 ~~----~~~sgs~D~tVkVW~v~n~----------~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~c  363 (537)
T KOG0274|consen  301 PF----LLVSGSRDNTVKVWDVTNG----------ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKC  363 (537)
T ss_pred             Cc----eEeeccCCceEEEEeccCc----------ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhcee
Confidence            64    8899999999999999973          4478888899999999996   57999999999999999997752


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC-CCCcccCCCCCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPP  261 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~-~~~~~~~~~~~~~  261 (763)
                                               +....+|...|+++.+.+.  +.+++|+.|++|++||+++. +.+.++       
T Consensus       364 -------------------------l~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl-------  409 (537)
T KOG0274|consen  364 -------------------------LKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTL-------  409 (537)
T ss_pred             -------------------------eeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhh-------
Confidence                                     3445578999999988874  69999999999999999987 444333       


Q ss_pred             CcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                                   .+|.. -+..+.  ..+++|++++.|++|++||..+++
T Consensus       410 -------------~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  410 -------------QGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             -------------cCCcc-cccccc--cccceeEeccccccEEEeecccCc
Confidence                         34544 254443  467889999999999999988853

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=6.7e-26  Score=225.26  Aligned_cols=201  Identities=18%  Similarity=0.302  Sum_probs=163.7

Q ss_pred             cCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290           50 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (763)
Q Consensus        50 ~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~  128 (763)
                      ...|.+++|+|... -+|+.+. -.|.||+..+....+++ ......|.++.|..|  |.+|+.|...|.|+|||..+  
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~D--G~LlaaGD~sG~V~vfD~k~--   99 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRSD--GRLLAAGDESGHVKVFDMKS--   99 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-HhhccceeEEEeecC--CeEEEccCCcCcEEEecccc--
Confidence            36799999999553 3444333 48999999888777777 567788999999999  89999999999999999654  


Q ss_pred             CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (763)
                              ...++.+.+|..+|..+.|+|++...|++|+.|+.+++||+.+..                         .+
T Consensus       100 --------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-------------------------v~  146 (487)
T KOG0310|consen  100 --------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-------------------------VQ  146 (487)
T ss_pred             --------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-------------------------EE
Confidence                    134788899999999999999999999999999999999998763                         12


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC-CCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (763)
Q Consensus       209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~  287 (763)
                      ....+|+..|.|.+|+|.++.++++|+.||+||+||++... .+.++                     .|. .+|..|.|
T Consensus       147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el---------------------nhg-~pVe~vl~  204 (487)
T KOG0310|consen  147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL---------------------NHG-CPVESVLA  204 (487)
T ss_pred             EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe---------------------cCC-CceeeEEE
Confidence            34457899999999999888899999999999999999763 22211                     122 26999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          288 SPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       288 spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      -|.|..+++++ ...|++||+.++.
T Consensus       205 lpsgs~iasAg-Gn~vkVWDl~~G~  228 (487)
T KOG0310|consen  205 LPSGSLIASAG-GNSVKVWDLTTGG  228 (487)
T ss_pred             cCCCCEEEEcC-CCeEEEEEecCCc
Confidence            99999777665 4589999999753

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7e-26  Score=240.27  Aligned_cols=175  Identities=17%  Similarity=0.245  Sum_probs=140.1

Q ss_pred             EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC----------------------------C-----CC
Q 004290           85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS----------------------------G-----RG  131 (763)
Q Consensus        85 ~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~----------------------------~-----~~  131 (763)
                      .+.+...|.+.|+++.|+++  |++||+|+.|+.|+||.+....                            .     ..
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~D--GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHD--GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             eeccccccCCcEEEEEeCCC--CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            34452389999999999999  8999999999999999987500                            0     00


Q ss_pred             C-----------------CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          132 L-----------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       132 ~-----------------~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      .                 -....+|+..+.+|.+.|.+|.|+. + ++|++++.|++|++|++...+           |.
T Consensus       337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n-~fLLSSSMDKTVRLWh~~~~~-----------CL  403 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-N-NFLLSSSMDKTVRLWHPGRKE-----------CL  403 (712)
T ss_pred             cccccccCCccccCCCccccccccchhhhhccchhheeccccc-C-CeeEeccccccEEeecCCCcc-----------ee
Confidence            0                 0012356778899999999999997 3 688899999999999998765           33


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (763)
                      .++               .|...|+|++|+|.+.++|++|+-|+.||||++...+.+.-.                    
T Consensus       404 ~~F---------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~--------------------  448 (712)
T KOG0283|consen  404 KVF---------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN--------------------  448 (712)
T ss_pred             eEE---------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh--------------------
Confidence            444               378899999999998999999999999999999876533211                    


Q ss_pred             CCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       275 ~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                       .-.. -||+++|.|||++.++|+-+|.+++|++..-
T Consensus       449 -Dl~~-lITAvcy~PdGk~avIGt~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  449 -DLRD-LITAVCYSPDGKGAVIGTFNGYCRFYDTEGL  483 (712)
T ss_pred             -hhhh-hheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence             0111 4999999999999999999999999998873

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=2.6e-25  Score=217.36  Aligned_cols=202  Identities=19%  Similarity=0.320  Sum_probs=173.1

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~  130 (763)
                      ..+.++...|....+++|+.|..+.++|...++.+..+ .||...|+.+.|+|+  ...+++++.|..|+||.+....  
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~~--~~~v~~aSad~~i~vws~~~~s--  294 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHKD--LDTVITASADEIIRVWSVPLSS--  294 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEeccc--hhheeecCCcceEEeecccccc--
Confidence            56888888888788999999999999999999999888 899999999999999  6899999999999999998643  


Q ss_pred             CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccC
Q 004290          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (763)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (763)
                              .......|..+|+.+..+| .+.||++++.||+..+.|++++...           ....+           
T Consensus       295 --------~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~l-----------t~vs~-----------  343 (506)
T KOG0289|consen  295 --------EPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQL-----------TVVSD-----------  343 (506)
T ss_pred             --------Cccccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEE-----------EEEee-----------
Confidence                    2455678999999999999 7799999999999999999998633           11111           


Q ss_pred             CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC
Q 004290          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (763)
Q Consensus       211 ~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd  290 (763)
                       ......+++++|+|| |.+|++|..|+.|+|||+.+...+..|                    .||.+ +|..++|+.+
T Consensus       344 -~~s~v~~ts~~fHpD-gLifgtgt~d~~vkiwdlks~~~~a~F--------------------pght~-~vk~i~FsEN  400 (506)
T KOG0289|consen  344 -ETSDVEYTSAAFHPD-GLIFGTGTPDGVVKIWDLKSQTNVAKF--------------------PGHTG-PVKAISFSEN  400 (506)
T ss_pred             -ccccceeEEeeEcCC-ceEEeccCCCceEEEEEcCCccccccC--------------------CCCCC-ceeEEEeccC
Confidence             122356899999998 799999999999999999987655444                    34555 6999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCC
Q 004290          291 GEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       291 g~~l~~~s~d~~i~iwd~~~~  311 (763)
                      |-||++++.|+.|++||++.-
T Consensus       401 GY~Lat~add~~V~lwDLRKl  421 (506)
T KOG0289|consen  401 GYWLATAADDGSVKLWDLRKL  421 (506)
T ss_pred             ceEEEEEecCCeEEEEEehhh
Confidence            999999999999999999883

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=3.2e-25  Score=213.48  Aligned_cols=182  Identities=19%  Similarity=0.194  Sum_probs=131.7

Q ss_pred             CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC--CEEEEEeC
Q 004290           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASE  168 (763)
Q Consensus        91 ~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~--~~l~s~s~  168 (763)
                      .|...|.++...+    ..|++|+.||.+++||..-           +....+.+|.++|.+++|.-.+.  ..|++++.
T Consensus       103 ~hdDWVSsv~~~~----~~IltgsYDg~~riWd~~G-----------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~  167 (423)
T KOG0313|consen  103 LHDDWVSSVKGAS----KWILTGSYDGTSRIWDLKG-----------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM  167 (423)
T ss_pred             cchhhhhhhcccC----ceEEEeecCCeeEEEecCC-----------ceEEEEecCCcceeeeEEEecCCccceEEEecC
Confidence            5778888887773    6999999999999999983           45888999999999998864332  36999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC
Q 004290          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (763)
Q Consensus       169 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~  248 (763)
                      |.++++|-+..+....                     ..+..-.+|...|-++...++ +..+++|+.|..|+||+..+.
T Consensus       168 Dqtl~Lw~~~~~~~~~---------------------~~~~~~~GHk~~V~sVsv~~s-gtr~~SgS~D~~lkiWs~~~~  225 (423)
T KOG0313|consen  168 DQTLRLWKWNVGENKV---------------------KALKVCRGHKRSVDSVSVDSS-GTRFCSGSWDTMLKIWSVETD  225 (423)
T ss_pred             CceEEEEEecCchhhh---------------------hHHhHhcccccceeEEEecCC-CCeEEeecccceeeecccCCC
Confidence            9999999988876431                     112222378999999999997 789999999999999993321


Q ss_pred             C--CCcccCCCCC----CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          249 P--PLTSCQKRMS----PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       249 ~--~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      .  .+........    ..+..... .......||.. +|.+|.|++ ...+++++.|.+|+.||+.+++
T Consensus       226 ~~~~~E~~s~~rrk~~~~~~~~~~r-~P~vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~  292 (423)
T KOG0313|consen  226 EEDELESSSNRRRKKQKREKEGGTR-TPLVTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG  292 (423)
T ss_pred             ccccccccchhhhhhhhhhhccccc-CceEEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence            1  1111110000    00000011 11122257887 699999998 5679999999999999999964

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7.4e-25  Score=206.09  Aligned_cols=206  Identities=21%  Similarity=0.352  Sum_probs=165.8

Q ss_pred             cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      +.++..+..|.+.|++|+.+  |.++||||.|-+|+|||+.+...+..+ ..|.+.|+++.|.+......|++|+.||.|
T Consensus        33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-eccccceEEEEecCCcchhheeeecCCCcE
Confidence            45677889999999999986  899999999999999999999988888 689999999999998433489999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      .+|+...          +.++..+++|.+.|+.|+.+| .+.+.++.+.|+.+++||+-.++..            .+..
T Consensus       110 ~iw~~~~----------W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a------------~v~~  166 (362)
T KOG0294|consen  110 IIWRVGS----------WELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVA------------FVLN  166 (362)
T ss_pred             EEEEcCC----------eEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccc------------eeec
Confidence            9999986          577899999999999999999 6789999999999999999888632            1111


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                      +              ......+.|+|. |.+|++++.+ .|-||.+.+-.....+..                      .
T Consensus       167 L--------------~~~at~v~w~~~-Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~----------------------~  208 (362)
T KOG0294|consen  167 L--------------KNKATLVSWSPQ-GDHFVVSGRN-KIDIYQLDNASVFREIEN----------------------P  208 (362)
T ss_pred             c--------------CCcceeeEEcCC-CCEEEEEecc-EEEEEecccHhHhhhhhc----------------------c
Confidence            1              112234899997 7888888765 678998886544332210                      0


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      ..+.++.|- ++.+|++|..|+.|.+||.++
T Consensus       209 ~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds  238 (362)
T KOG0294|consen  209 KRILCATFL-DGSELLVGGDNEWISLKDTDS  238 (362)
T ss_pred             ccceeeeec-CCceEEEecCCceEEEeccCC
Confidence            136666665 456799999999999999876

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=6.3e-25  Score=205.38  Aligned_cols=201  Identities=16%  Similarity=0.223  Sum_probs=157.7

Q ss_pred             ccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCC-CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290           49 HQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (763)
Q Consensus        49 H~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~-~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~  126 (763)
                      -.+.|.+|+||| ...+|+.||.|++||+|+++. |..+.+....|.++|.+++|+.+  |..+++|+.|+.+++||+.+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd--gskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD--GSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC--CceEEeeccCCceEEEEccC
Confidence            467899999999 556777999999999999987 45555544689999999999999  79999999999999999997


Q ss_pred             CCCCCCCCCCCCCceeeecccCceeEEEEecCCCC--EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH--VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                      ++           ...+..|.++|..+.|-+ +..  .|+||+.|++|+.||+|...++...                  
T Consensus       104 ~Q-----------~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~------------------  153 (347)
T KOG0647|consen  104 GQ-----------VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATL------------------  153 (347)
T ss_pred             CC-----------eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeee------------------
Confidence            43           677788999999999987 444  8999999999999999987643110                  


Q ss_pred             eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (763)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  284 (763)
                              .....++++..-.   .+++++..++.|.+|++++........             ...+      ...+.+
T Consensus       154 --------~LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~-------------~SpL------k~Q~R~  203 (347)
T KOG0647|consen  154 --------QLPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRI-------------ESPL------KWQTRC  203 (347)
T ss_pred             --------eccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhh-------------cCcc------cceeeE
Confidence                    0123455554432   389999999999999998764322110             0001      125899


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          285 VTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       285 v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      |+..+|....+.|+-.|.+.|..++.+
T Consensus       204 va~f~d~~~~alGsiEGrv~iq~id~~  230 (347)
T KOG0647|consen  204 VACFQDKDGFALGSIEGRVAIQYIDDP  230 (347)
T ss_pred             EEEEecCCceEeeeecceEEEEecCCC
Confidence            999999888899999999999988874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=1.6e-26  Score=209.93  Aligned_cols=211  Identities=21%  Similarity=0.308  Sum_probs=177.2

Q ss_pred             hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (763)
Q Consensus        38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg  117 (763)
                      .+..-+.+|.||++.|++...+.+..+-|+++.|-+.+|||.-+|..++.|  .|.--|.+++|+.+  .++|++|+.++
T Consensus        47 ~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~d--s~~lltgg~ek  122 (334)
T KOG0278|consen   47 DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQD--SNYLLTGGQEK  122 (334)
T ss_pred             CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEeccc--chhhhccchHH
Confidence            345667899999999999999999999999999999999999999999998  57778999999999  59999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  197 (763)
                      .++|||++.++         .+...+.+|.+.|..+.|.- ..+.|++.+.|++||+||.++++..+             
T Consensus       123 llrvfdln~p~---------App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~-------------  179 (334)
T KOG0278|consen  123 LLRVFDLNRPK---------APPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQ-------------  179 (334)
T ss_pred             HhhhhhccCCC---------CCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEE-------------
Confidence            99999999764         34677889999999999988 45777788999999999999987431             


Q ss_pred             EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004290          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (763)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (763)
                               .+    .-..+|+++.++++ + .+++....+.|.+||..+...+..+..+                    
T Consensus       180 ---------sL----~~~s~VtSlEvs~d-G-~ilTia~gssV~Fwdaksf~~lKs~k~P--------------------  224 (334)
T KOG0278|consen  180 ---------SL----EFNSPVTSLEVSQD-G-RILTIAYGSSVKFWDAKSFGLLKSYKMP--------------------  224 (334)
T ss_pred             ---------EE----ecCCCCcceeeccC-C-CEEEEecCceeEEeccccccceeeccCc--------------------
Confidence                     01    11346889999997 4 4566667789999999987766544211                    


Q ss_pred             CccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       278 ~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                        ..|++..++|+...+++|+.|..++.||..++.
T Consensus       225 --~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge  257 (334)
T KOG0278|consen  225 --CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE  257 (334)
T ss_pred             --cccccccccCCCceEEecCcceEEEEEeccCCc
Confidence              149999999999999999999999999999953

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=4.7e-25  Score=231.93  Aligned_cols=253  Identities=17%  Similarity=0.198  Sum_probs=191.4

Q ss_pred             cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p  103 (763)
                      +.-..++++|.  +++.+.+++++++...|+++.=+|-=..+|.|..+|+|.|++++.++.+.+|. .-.++|+++.|..
T Consensus       178 Gs~~G~lql~N--vrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk-~d~g~VtslSFrt  254 (910)
T KOG1539|consen  178 GSSQGRLQLWN--VRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK-QDWGRVTSLSFRT  254 (910)
T ss_pred             eecCCcEEEEE--eccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE-ccccceeEEEecc
Confidence            34567888888  88999999999999999999999988999999999999999999999999993 2259999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce-eeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA-LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      |+ ..++++|+..|.+.+||++...          .+. ....|.+.|....|-| +..++++++.|..+++|=..++. 
T Consensus       255 DG-~p~las~~~~G~m~~wDLe~kk----------l~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~d-  321 (910)
T KOG1539|consen  255 DG-NPLLASGRSNGDMAFWDLEKKK----------LINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGD-  321 (910)
T ss_pred             CC-CeeEEeccCCceEEEEEcCCCe----------eeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCC-
Confidence            96 6678888888999999999632          133 3347889999999999 66799999999999999766554 


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCC------
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK------  256 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~------  256 (763)
                                          +..+.+....+|..+..+|.|.-.++..+.+++.|++++.+++.....-.++..      
T Consensus       322 --------------------g~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~  381 (910)
T KOG1539|consen  322 --------------------GVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR  381 (910)
T ss_pred             --------------------CcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence                                122345555678999999999977789999999999999998754332111111      


Q ss_pred             ------C---CCCCCcccccc----------------------------c----cc-ccCC--CCCccceeEEEEcCCCC
Q 004290          257 ------R---MSPPPCVNYFC----------------------------P----MH-LSEH--GRSSLHLTHVTFSPNGE  292 (763)
Q Consensus       257 ------~---~~~~~~~~~~~----------------------------~----~~-~~~~--g~~~~~i~~v~~spdg~  292 (763)
                            .   ..-.+.+..|.                            .    .| +...  ......+++|+.+++|+
T Consensus       382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN  461 (910)
T KOG1539|consen  382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN  461 (910)
T ss_pred             cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence                  0   00000000000                            0    00 0000  01223689999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCC
Q 004290          293 EVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       293 ~l~~~s~d~~i~iwd~~~~~  312 (763)
                      +.+.|+..|.|.+|++.++-
T Consensus       462 F~~IG~S~G~Id~fNmQSGi  481 (910)
T KOG1539|consen  462 FVFIGYSKGTIDRFNMQSGI  481 (910)
T ss_pred             eEEEeccCCeEEEEEcccCe
Confidence            99999999999999999964

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.94  E-value=6.3e-26  Score=224.99  Aligned_cols=260  Identities=17%  Similarity=0.236  Sum_probs=211.7

Q ss_pred             ccccCCCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCce
Q 004290           17 TRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV   96 (763)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V   96 (763)
                      ..+|..+.+++..+++|+.+- ..+++++|.||..+|.+++|+++|..++|+|.|+.|++||+++|+++..+.  -...+
T Consensus       226 ~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~  302 (503)
T KOG0282|consen  226 KGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVP  302 (503)
T ss_pred             eeeEEEecCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe--cCCCc
Confidence            446667788999999999666 568999999999999999999999999999999999999999999999983  34578


Q ss_pred             EEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004290           97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (763)
Q Consensus        97 ~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd  176 (763)
                      +|+.|+|+. .+.|++|+.|+.|+.||++.+          +.++.+..|-+.|..+.|-+ ++..|++.+.|++++||+
T Consensus       303 ~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~----------kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe  370 (503)
T KOG0282|consen  303 TCVKFHPDN-QNIFLVGGSDKKIRQWDIRSG----------KVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWE  370 (503)
T ss_pred             eeeecCCCC-CcEEEEecCCCcEEEEeccch----------HHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEE
Confidence            999999994 589999999999999999984          45788899999999999999 668999999999999999


Q ss_pred             CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCC
Q 004290          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (763)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~  256 (763)
                      .+.+-.+..+                      ...  ......++..+|. +.++++-+.|+.|.+|.+...-.+..   
T Consensus       371 ~~~~v~ik~i----------------------~~~--~~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~~~~~r~nk---  422 (503)
T KOG0282|consen  371 NRIPVPIKNI----------------------ADP--EMHTMPCLTLHPN-GKWFAAQSMDNYIAIFSTVPPFRLNK---  422 (503)
T ss_pred             cCCCccchhh----------------------cch--hhccCcceecCCC-CCeehhhccCceEEEEecccccccCH---
Confidence            9887543111                      111  1234568899997 68999999999999998664321110   


Q ss_pred             CCCCCCcccccccccccCCCCCc-cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004290          257 RMSPPPCVNYFCPMHLSEHGRSS-LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (763)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~g~~~-~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (763)
                             -+.|       .||.- +.-..|.|||||++|++|..||.+.+||.++.+.......+..+...+.|+|..
T Consensus       423 -------kK~f-------eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e  486 (503)
T KOG0282|consen  423 -------KKRF-------EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE  486 (503)
T ss_pred             -------hhhh-------cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence                   0111       23321 135779999999999999999999999999977666666777888889999953

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=2.4e-24  Score=233.24  Aligned_cols=247  Identities=14%  Similarity=0.189  Sum_probs=176.3

Q ss_pred             ccccccccchhhhhccccceeeccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCe--------EEEEEccCCCCc
Q 004290           25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK--------LLHSIETGHSAN   95 (763)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~--------~~~~~~~~h~~~   95 (763)
                      +....+++|+.  .+...+..|.+|.+.|.+++|+|+ +.+||||+.|++|+|||+.++.        .+..+ .+|...
T Consensus        51 G~~gvI~L~~~--~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~  127 (568)
T PTZ00420         51 GLIGAIRLENQ--MRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKK  127 (568)
T ss_pred             CceeEEEeeec--CCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCc
Confidence            34556677663  334677889999999999999996 7899999999999999997642        23345 789999


Q ss_pred             eEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004290           96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (763)
Q Consensus        96 V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iw  175 (763)
                      |.+++|+|+. ..+|++++.|++|+|||++++.          ....+. |...|.+++|+| ++.+|++++.|+.|++|
T Consensus       128 V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~----------~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIw  194 (568)
T PTZ00420        128 ISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEK----------RAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHII  194 (568)
T ss_pred             EEEEEECCCC-CeEEEEEeCCCeEEEEECCCCc----------EEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEE
Confidence            9999999983 3456899999999999998732          233444 667899999999 67899999999999999


Q ss_pred             ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccc-----eEEEEEeCCCCcEEEEEeCCC----cEEEEeCC
Q 004290          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS-----LKSCDISSTRPHLLLVGGSDA----FARLYDRR  246 (763)
Q Consensus       176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~i~~~p~~~~~l~sgs~Dg----~i~iwd~~  246 (763)
                      |+++++.+.                         ...+|...     +....|+++ +.+|++++.|+    .|+|||++
T Consensus       195 D~Rsg~~i~-------------------------tl~gH~g~~~s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr  248 (568)
T PTZ00420        195 DPRKQEIAS-------------------------SFHIHDGGKNTKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLK  248 (568)
T ss_pred             ECCCCcEEE-------------------------EEecccCCceeEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECC
Confidence            999876320                         01122222     233456676 56888877664    79999999


Q ss_pred             CCC-CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCc-cceEeecCCCC
Q 004290          247 MLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG-RAMRYTVGDAS  324 (763)
Q Consensus       247 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~-~~~~~~~~~~~  324 (763)
                      ... ++.....                  ..+.. .+...-..++|.++++|+.|+.|++|++..+.. ....+....+.
T Consensus       249 ~~~~pl~~~~l------------------d~~~~-~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~  309 (568)
T PTZ00420        249 NTTSALVTMSI------------------DNASA-PLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPF  309 (568)
T ss_pred             CCCCceEEEEe------------------cCCcc-ceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCc
Confidence            632 2221100                  11111 233343455688999999999999999987532 22234455667


Q ss_pred             eeeeeccC
Q 004290          325 KIMSFTPT  332 (763)
Q Consensus       325 ~~~~~~p~  332 (763)
                      +.++|.|.
T Consensus       310 ~g~~f~Pk  317 (568)
T PTZ00420        310 RSFGFLPK  317 (568)
T ss_pred             cceEEccc
Confidence            78888885

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=6.5e-25  Score=211.29  Aligned_cols=247  Identities=19%  Similarity=0.287  Sum_probs=171.9

Q ss_pred             hhhhccccCCCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC------CCeEEE
Q 004290           13 DMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS------SRKLLH   86 (763)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~------~~~~~~   86 (763)
                      .+|-+|+++..+...+.++-  .+..+.-+.+.+.+|.++|++|.|+.++++||+|+.|..++||+++      +.+.+.
T Consensus        21 ~FL~QR~i~~~~~~~k~F~~--~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~   98 (609)
T KOG4227|consen   21 SFLCQREIGSVKSVVKTFRP--DFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG   98 (609)
T ss_pred             eeeeecccCCChhhhhhhch--hhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce
Confidence            34556777665543322222  1223344556788999999999999999999999999999999986      345666


Q ss_pred             EEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee--cccCceeEEEEecCCCCEEE
Q 004290           87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVW  164 (763)
Q Consensus        87 ~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~  164 (763)
                      .....|...|+|++|...  +.++.+|..+++|...|+++..          .+.++.  ...+.|+.|..+|. .+.|+
T Consensus        99 ~~~~~H~SNIF~L~F~~~--N~~~~SG~~~~~VI~HDiEt~q----------si~V~~~~~~~~~VY~m~~~P~-DN~~~  165 (609)
T KOG4227|consen   99 VMEHPHRSNIFSLEFDLE--NRFLYSGERWGTVIKHDIETKQ----------SIYVANENNNRGDVYHMDQHPT-DNTLI  165 (609)
T ss_pred             eccCccccceEEEEEccC--CeeEecCCCcceeEeeecccce----------eeeeecccCcccceeecccCCC-CceEE
Confidence            664567799999999988  6999999999999999999743          233332  23458999999996 58899


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEe
Q 004290          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD  244 (763)
Q Consensus       165 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd  244 (763)
                      +.+.+|.|.+||.+........          +.            .........++.|+|..+.+|++.+..+-+.+||
T Consensus       166 ~~t~~~~V~~~D~Rd~~~~~~~----------~~------------~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D  223 (609)
T KOG4227|consen  166 VVTRAKLVSFIDNRDRQNPISL----------VL------------PANSGKNFYTAEFHPETPALILVNSETGGPNVFD  223 (609)
T ss_pred             EEecCceEEEEeccCCCCCCce----------ee------------ecCCCccceeeeecCCCceeEEeccccCCCCcee
Confidence            9999999999999987632110          10            0112234678899999899999999999999999


Q ss_pred             CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      +++.+.-            +..+ ...+..... .....++.|+|+|..|++--....-.+||+.+
T Consensus       224 ~R~~~~~------------~~~~-~~~~~L~~~-~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S  275 (609)
T KOG4227|consen  224 RRMQARP------------VYQR-SMFKGLPQE-NTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS  275 (609)
T ss_pred             eccccch------------HHhh-hccccCccc-chhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence            9975421            1110 000000011 11357788999998877654443444444433

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=8.7e-24  Score=228.85  Aligned_cols=192  Identities=15%  Similarity=0.174  Sum_probs=147.9

Q ss_pred             EeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeeccc
Q 004290           68 GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT  147 (763)
Q Consensus        68 gs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~  147 (763)
                      |+.++.|++|+......+..+ .+|...|.+++|+|+. +.+|++|+.|++|+|||+........  ....++..+.+|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~-~~lLASgS~DgtIrIWDi~t~~~~~~--~i~~p~~~L~gH~  125 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCF-SEILASGSEDLTIRVWEIPHNDESVK--EIKDPQCILKGHK  125 (568)
T ss_pred             CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCC-CCEEEEEeCCCeEEEEECCCCCcccc--ccccceEEeecCC
Confidence            667889999998887777778 7999999999999974 68999999999999999985321100  0013455678999


Q ss_pred             CceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC
Q 004290          148 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (763)
Q Consensus       148 ~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  227 (763)
                      ..|.+++|+|.+..+|++++.|++|++||+++++..              ..        +    .+...|.+++|+|+ 
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~--------------~~--------i----~~~~~V~Slswspd-  178 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA--------------FQ--------I----NMPKKLSSLKWNIK-  178 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--------------EE--------E----ecCCcEEEEEECCC-
Confidence            999999999966567789999999999999987521              00        0    12346899999997 


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc----ceeEEEEcCCCCEEEEEeCCC--
Q 004290          228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL----HLTHVTFSPNGEEVLLSYSGE--  301 (763)
Q Consensus       228 ~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~i~~v~~spdg~~l~~~s~d~--  301 (763)
                      +.+|++++.|+.|+|||+++++.+.++                    .+|.+.    .+....|++++.+|++++.|+  
T Consensus       179 G~lLat~s~D~~IrIwD~Rsg~~i~tl--------------------~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~  238 (568)
T PTZ00420        179 GNLLSGTCVGKHMHIIDPRKQEIASSF--------------------HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN  238 (568)
T ss_pred             CCEEEEEecCCEEEEEECCCCcEEEEE--------------------ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC
Confidence            789999999999999999987654332                    223321    133345679999999988764  


Q ss_pred             --eEEEEECCC
Q 004290          302 --HVYLMDVNH  310 (763)
Q Consensus       302 --~i~iwd~~~  310 (763)
                        .|+|||++.
T Consensus       239 ~R~VkLWDlr~  249 (568)
T PTZ00420        239 MREMKLWDLKN  249 (568)
T ss_pred             ccEEEEEECCC
Confidence              799999986

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.9e-24  Score=213.26  Aligned_cols=208  Identities=20%  Similarity=0.267  Sum_probs=171.0

Q ss_pred             ceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEE-EEEc----------------cCCCCceEEEEEeeCC
Q 004290           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-HSIE----------------TGHSANVFCTKFVPET  105 (763)
Q Consensus        43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~-~~~~----------------~~h~~~V~~v~~~p~~  105 (763)
                      +..+..|.-+|.+|+++|++++.++++.|++|.=|++.+++.. ..+.                .+|...+.+++.+++ 
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D-  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD-  213 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC-
Confidence            6677889999999999999999999999999999999888744 1111                268889999999999 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004290          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (763)
Q Consensus       106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~  185 (763)
                       +++|++|+.|..|.||+.++.          ++++.+++|.+.|.+++|-. +...+++++.|++|++|++....    
T Consensus       214 -gkylatgg~d~~v~Iw~~~t~----------ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s----  277 (479)
T KOG0299|consen  214 -GKYLATGGRDRHVQIWDCDTL----------EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLS----  277 (479)
T ss_pred             -CcEEEecCCCceEEEecCccc----------chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhH----
Confidence             899999999999999999983          55788999999999999987 77888899999999999988754    


Q ss_pred             CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccc
Q 004290          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (763)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  265 (763)
                                           .+.+.-+|...|.+|..... +..+-+|+.|+++++|++.....+.             
T Consensus       278 ---------------------~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesqli-------------  322 (479)
T KOG0299|consen  278 ---------------------YVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQLI-------------  322 (479)
T ss_pred             ---------------------HHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccceee-------------
Confidence                                 23344567888888887775 5677777799999999996432211             


Q ss_pred             ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       266 ~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                       |       .++.+ .+-+++|-.+. ++++|+.+|.|.+|++...+
T Consensus       323 -f-------rg~~~-sidcv~~In~~-HfvsGSdnG~IaLWs~~KKk  359 (479)
T KOG0299|consen  323 -F-------RGGEG-SIDCVAFINDE-HFVSGSDNGSIALWSLLKKK  359 (479)
T ss_pred             -e-------eCCCC-CeeeEEEeccc-ceeeccCCceEEEeeecccC
Confidence             1       33443 49999998764 58999999999999998854

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=6.7e-25  Score=201.05  Aligned_cols=161  Identities=20%  Similarity=0.259  Sum_probs=128.4

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      .+|...|.+++|+-+  |..|++|+.|+++++|++.....        .......+|.+.|-.++|+|..+.+|++++.|
T Consensus        17 ~~~~~~v~Sv~wn~~--g~~lasgs~dktv~v~n~e~~r~--------~~~~~~~gh~~svdql~w~~~~~d~~atas~d   86 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCD--GTKLASGSFDKTVSVWNLERDRF--------RKELVYRGHTDSVDQLCWDPKHPDLFATASGD   86 (313)
T ss_pred             hhhhhcceEEEEccc--CceeeecccCCceEEEEecchhh--------hhhhcccCCCcchhhheeCCCCCcceEEecCC
Confidence            689999999999999  89999999999999999986421        22445678999999999999999999999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      ++|++||++.++++..+.                          ....-.-+.|+|+ +.++++++.|..|.+.|.++.+
T Consensus        87 k~ir~wd~r~~k~~~~i~--------------------------~~~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~  139 (313)
T KOG1407|consen   87 KTIRIWDIRSGKCTARIE--------------------------TKGENINITWSPD-GEYIAVGNKDDRITFIDARTYK  139 (313)
T ss_pred             ceEEEEEeccCcEEEEee--------------------------ccCcceEEEEcCC-CCEEEEecCcccEEEEEecccc
Confidence            999999999998541110                          1122346789997 6899999999999999999876


Q ss_pred             CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004290          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~  309 (763)
                      .+...+.                      ...++.++|+-++.+++....-|+|.|-...
T Consensus       140 ~~~~~~~----------------------~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp  177 (313)
T KOG1407|consen  140 IVNEEQF----------------------KFEVNEISWNNSNDLFFLTNGLGCVEILSYP  177 (313)
T ss_pred             eeehhcc----------------------cceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence            5543211                      1137889999888888888778888876543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.8e-23  Score=196.66  Aligned_cols=196  Identities=21%  Similarity=0.250  Sum_probs=156.0

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      .+.|.+|.|+|.+..|+.++.||.+++||+........+  .|..++.+++|.++   ..+++|+.||.|+.+|+.++. 
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dln~~~-   86 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADE---STIVTGGLDGQVRRYDLNTGN-   86 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccCC---ceEEEeccCceEEEEEecCCc-
Confidence            678999999999888888899999999999988666665  68899999999987   689999999999999999754 


Q ss_pred             CCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeecc
Q 004290          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (763)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (763)
                                ...+..|..+|.||.+++ ....+++||.|++|++||.|......                         
T Consensus        87 ----------~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~-------------------------  130 (323)
T KOG1036|consen   87 ----------EDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVG-------------------------  130 (323)
T ss_pred             ----------ceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecccccccc-------------------------
Confidence                      455677999999999998 55788899999999999999743210                         


Q ss_pred             CCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC
Q 004290          210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  289 (763)
Q Consensus       210 ~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp  289 (763)
                       .......|.++...   ++.|++|+.|..+.+||+|+........             .     .+. ...+.+|++-|
T Consensus       131 -~~d~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q~r-------------e-----S~l-kyqtR~v~~~p  187 (323)
T KOG1036|consen  131 -TFDQGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQRR-------------E-----SSL-KYQTRCVALVP  187 (323)
T ss_pred             -ccccCceEEEEecc---CCEEEEeecCceEEEEEcccccchhhhc-------------c-----ccc-eeEEEEEEEec
Confidence             00122367777775   4699999999999999999875332110             0     111 12599999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCC
Q 004290          290 NGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       290 dg~~l~~~s~d~~i~iwd~~~  310 (763)
                      ++.-.++++-||.|.+=.++.
T Consensus       188 n~eGy~~sSieGRVavE~~d~  208 (323)
T KOG1036|consen  188 NGEGYVVSSIEGRVAVEYFDD  208 (323)
T ss_pred             CCCceEEEeecceEEEEccCC
Confidence            988899999999988755554

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=2e-23  Score=215.57  Aligned_cols=244  Identities=16%  Similarity=0.179  Sum_probs=169.1

Q ss_pred             cccccccchhhhhccccceeeccccCceEEEEeCCCCC---EEEEEeCCCcEEEEeCCCCe--EEEEEc-----------
Q 004290           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS---LLISGSDDTHINVWSYSSRK--LLHSIE-----------   89 (763)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~---~Lasgs~D~~v~iWd~~~~~--~~~~~~-----------   89 (763)
                      ....|.+++....  -....+.||..+|+|+.|-|+.+   +|++|+.|++|++|.++...  ++..+.           
T Consensus        32 a~~~Iav~dp~k~--~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a  109 (764)
T KOG1063|consen   32 AGPAIAVADPEKI--LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVA  109 (764)
T ss_pred             CCceEEEeCcccc--eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEe
Confidence            3455666663322  45678899999999999999877   89999999999999876211  111110           


Q ss_pred             ------------------------------------------------------------------------------cC
Q 004290           90 ------------------------------------------------------------------------------TG   91 (763)
Q Consensus        90 ------------------------------------------------------------------------------~~   91 (763)
                                                                                                    .|
T Consensus       110 ~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~G  189 (764)
T KOG1063|consen  110 RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEG  189 (764)
T ss_pred             eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeec
Confidence                                                                                          47


Q ss_pred             CCCceEEEEEeeCCC-CcEEEEEeCCCcEEEEECCCCCCCC-----------CCCCCCCCc----------eeeecccCc
Q 004290           92 HSANVFCTKFVPETS-DELVVSGAGDAEVRLFNLSRFSGRG-----------LDDNAITPS----------ALYQCHTRR  149 (763)
Q Consensus        92 h~~~V~~v~~~p~~~-~~~l~s~s~dg~I~iwd~~~~~~~~-----------~~~~~~~~~----------~~~~~h~~~  149 (763)
                      |...|.+++|..... .-+|+|+|.|..||||.+.......           .+.......          ..+.+|.+.
T Consensus       190 H~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDW  269 (764)
T KOG1063|consen  190 HTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDW  269 (764)
T ss_pred             cchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccc
Confidence            777788888876532 4589999999999999987543111           000000111          223489999


Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCc
Q 004290          150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH  229 (763)
Q Consensus       150 v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  229 (763)
                      |+++.|+| .+..|++++.|.++.+|.-....-+            -+-..      .+-...+......++.|+|+ ++
T Consensus       270 V~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGi------------Wv~~v------RlGe~gg~a~GF~g~lw~~n-~~  329 (764)
T KOG1063|consen  270 VYSVWWHP-EGLDLLSASADKSMIIWKPDENTGI------------WVDVV------RLGEVGGSAGGFWGGLWSPN-SN  329 (764)
T ss_pred             eEEEEEcc-chhhheecccCcceEEEecCCccce------------EEEEE------EeecccccccceeeEEEcCC-CC
Confidence            99999999 5567789999999999976654311            01111      12222244567889999997 68


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004290          230 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (763)
Q Consensus       230 ~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~  309 (763)
                      .+++-+.-|..++|-.....                 +........||.. .|+.|+|+|.|.+|++.+.|.+-++|-.-
T Consensus       330 ~ii~~g~~Gg~hlWkt~d~~-----------------~w~~~~~iSGH~~-~V~dv~W~psGeflLsvs~DQTTRlFa~w  391 (764)
T KOG1063|consen  330 VIIAHGRTGGFHLWKTKDKT-----------------FWTQEPVISGHVD-GVKDVDWDPSGEFLLSVSLDQTTRLFARW  391 (764)
T ss_pred             EEEEecccCcEEEEeccCcc-----------------ceeeccccccccc-cceeeeecCCCCEEEEeccccceeeeccc
Confidence            99999999999999822211                 1111112256766 49999999999999999999999999665

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.3e-24  Score=222.59  Aligned_cols=215  Identities=20%  Similarity=0.292  Sum_probs=170.6

Q ss_pred             cccCceE---EEEeC-CCCCEEEEEeCCCcEEEEeCCCCe------EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290           48 GHQGCVN---AISWN-SKGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (763)
Q Consensus        48 gH~~~V~---~l~fs-p~g~~Lasgs~D~~v~iWd~~~~~------~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg  117 (763)
                      .|...|+   .+..+ |.+++|+|||.||.|++|+.....      .+..+ ..|...|+.+...-+  ++.|+|+|.|.
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~--~~tlIS~SsDt   95 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGN--GKTLISASSDT   95 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcC--CCceEEecCCc
Confidence            3555566   45554 467789999999999999986432      35666 789999999999988  78999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  197 (763)
                      +|++|+......        -+..++..|.+.|.|+++-..+..++||||-|+.|.+||+.++...            .+
T Consensus        96 TVK~W~~~~~~~--------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~------------l~  155 (735)
T KOG0308|consen   96 TVKVWNAHKDNT--------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT------------LV  155 (735)
T ss_pred             eEEEeecccCcc--------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh------------hh
Confidence            999999986431        3477888999999999994447789999999999999999987420            00


Q ss_pred             EecCCCceeeccCCC-CCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290          198 LDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (763)
Q Consensus       198 ~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (763)
                         ............ ++..+|++++.++. +..|++|+..+.+++||.++.+.+..+                    .|
T Consensus       156 ---~s~n~~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgtek~lr~wDprt~~kimkL--------------------rG  211 (735)
T KOG0308|consen  156 ---ASFNNVTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKKIMKL--------------------RG  211 (735)
T ss_pred             ---hhccccccccCCCCCccceeeeecCCc-ceEEEecCcccceEEeccccccceeee--------------------ec
Confidence               000001112222 67789999999997 689999999999999999998765444                    57


Q ss_pred             CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      |.. .|..+..++||..+++++.||+|++||+..
T Consensus       212 HTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgq  244 (735)
T KOG0308|consen  212 HTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQ  244 (735)
T ss_pred             ccc-ceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence            877 599999999999999999999999999876

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=7.1e-24  Score=209.59  Aligned_cols=184  Identities=15%  Similarity=0.176  Sum_probs=142.9

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      ..|.+.|+.+++.|.. ..++++.+..+.|.|||...............|...+.+|...-++|+|++.....+++++.|
T Consensus       121 i~h~gEVnRaRymPQn-p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQN-PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             ccCCccchhhhhCCCC-CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            3689999999999985 788999999999999999875544332224456678899999899999999888899999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      ++|++||+........                  .......+.+|...|..++|+|...++|++++.|+.+.|||+|+.+
T Consensus       200 ~~i~lwdi~~~~~~~~------------------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~  261 (422)
T KOG0264|consen  200 HTICLWDINAESKEDK------------------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT  261 (422)
T ss_pred             CcEEEEeccccccCCc------------------cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence            9999999987653100                  0112233457888999999999988999999999999999999631


Q ss_pred             CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 004290          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd-g~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .-                  ......+|.. .|++++|.|- +..||+|+.|++|.+||+++.
T Consensus       262 ~~------------------~~~~~~ah~~-~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL  305 (422)
T KOG0264|consen  262 SK------------------PSHSVKAHSA-EVNCVAFNPFNEFILATGSADKTVALWDLRNL  305 (422)
T ss_pred             CC------------------CcccccccCC-ceeEEEeCCCCCceEEeccCCCcEEEeechhc
Confidence            10                  0011134555 6999999995 556777888999999999983

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.93  E-value=3.7e-25  Score=215.21  Aligned_cols=263  Identities=22%  Similarity=0.293  Sum_probs=210.5

Q ss_pred             hhhccccCCCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCC
Q 004290           14 MLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS   93 (763)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~   93 (763)
                      .+..+....++++++.|++|.....+...+.+|.|-.+.|+.+.|.++++.+++++.|+.+++|++...+...++ .+|+
T Consensus       183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHt  261 (459)
T KOG0288|consen  183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL-SGHT  261 (459)
T ss_pred             EccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh-cccc
Confidence            344445566788999999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             CceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEE
Q 004290           94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR  173 (763)
Q Consensus        94 ~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~  173 (763)
                      ..|+++.|...  ...+++|+.|.+|++||+..  ..|        ..+.. ....+..|..+   ...+++|-.|++|+
T Consensus       262 dkVt~ak~~~~--~~~vVsgs~DRtiK~WDl~k--~~C--------~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvR  325 (459)
T KOG0288|consen  262 DKVTAAKFKLS--HSRVVSGSADRTIKLWDLQK--AYC--------SKTVL-PGSQCNDIVCS---ISDVISGHFDKKVR  325 (459)
T ss_pred             cceeeehhhcc--ccceeeccccchhhhhhhhh--hhe--------ecccc-ccccccceEec---ceeeeecccccceE
Confidence            99999999988  35599999999999999996  222        33332 23456677765   36788999999999


Q ss_pred             EEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcc
Q 004290          174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (763)
Q Consensus       174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~  253 (763)
                      +||++.....                         ...+. .+.|+++..+++ +..+.+++.|.++.+.|+++......
T Consensus       326 fwD~Rs~~~~-------------------------~sv~~-gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~eI~~~  378 (459)
T KOG0288|consen  326 FWDIRSADKT-------------------------RSVPL-GGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKEIRQT  378 (459)
T ss_pred             EEeccCCcee-------------------------eEeec-CcceeeEeeccC-CeEEeeecCCCceeeeecccccEEEE
Confidence            9999987632                         11112 247999999997 67888889999999999998765544


Q ss_pred             cCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCC--CCeeeeecc
Q 004290          254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD--ASKIMSFTP  331 (763)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~p  331 (763)
                      +.....                 .....++.++|||++.|+++|+.||.|+||++.+++........+.  .+..++|.|
T Consensus       379 ~sA~g~-----------------k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~  441 (459)
T KOG0288|consen  379 FSAEGF-----------------KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP  441 (459)
T ss_pred             eecccc-----------------ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC
Confidence            321100                 1112389999999999999999999999999999886555444443  478899999


Q ss_pred             CCCCcc
Q 004290          332 TLNGLE  337 (763)
Q Consensus       332 ~~~~~~  337 (763)
                      .+.++.
T Consensus       442 sG~~Ll  447 (459)
T KOG0288|consen  442 SGSGLL  447 (459)
T ss_pred             CCchhh
Confidence            766654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3e-24  Score=194.96  Aligned_cols=175  Identities=15%  Similarity=0.140  Sum_probs=136.5

Q ss_pred             EEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEE-ecCCCCEEE
Q 004290           86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV-EVGNPHVVW  164 (763)
Q Consensus        86 ~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-sp~~~~~l~  164 (763)
                      .++...|...|..+...-.  |..|+||+.|++|+|+.++....       ..++..+.+|.++|..++| +|.-+.+|+
T Consensus         4 q~idt~H~D~IHda~lDyy--gkrlATcsSD~tVkIf~v~~n~~-------s~ll~~L~Gh~GPVwqv~wahPk~G~iLA   74 (299)
T KOG1332|consen    4 QTIDTQHEDMIHDAQLDYY--GKRLATCSSDGTVKIFEVRNNGQ-------SKLLAELTGHSGPVWKVAWAHPKFGTILA   74 (299)
T ss_pred             eehhhhhhhhhhHhhhhhh--cceeeeecCCccEEEEEEcCCCC-------ceeeeEecCCCCCeeEEeecccccCcEee
Confidence            3455679999988888777  79999999999999999997432       2458899999999999999 566778999


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC-CcEEEEEeCCCcEEEE
Q 004290          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLY  243 (763)
Q Consensus       165 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~sgs~Dg~i~iw  243 (763)
                      +++.||.|.||.-..++-                       ........|...|++++|.|.+ +-.|+++++||.|.|.
T Consensus        75 ScsYDgkVIiWke~~g~w-----------------------~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl  131 (299)
T KOG1332|consen   75 SCSYDGKVIIWKEENGRW-----------------------TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVL  131 (299)
T ss_pred             EeecCceEEEEecCCCch-----------------------hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEE
Confidence            999999999998776531                       1234455788999999999964 5679999999999999


Q ss_pred             eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC---C-----------CEEEEEeCCCeEEEEECC
Q 004290          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---G-----------EEVLLSYSGEHVYLMDVN  309 (763)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd---g-----------~~l~~~s~d~~i~iwd~~  309 (763)
                      +.+....-           +.....      ..|.- .|++|+|.|-   |           +.|++|+.|+.|+||+..
T Consensus       132 ~~~~~g~w-----------~t~ki~------~aH~~-GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~  193 (299)
T KOG1332|consen  132 TYDSSGGW-----------TTSKIV------FAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD  193 (299)
T ss_pred             EEcCCCCc-----------cchhhh------hcccc-ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC
Confidence            98864110           000110      22433 4999999986   4           569999999999999877


Q ss_pred             C
Q 004290          310 H  310 (763)
Q Consensus       310 ~  310 (763)
                      +
T Consensus       194 ~  194 (299)
T KOG1332|consen  194 S  194 (299)
T ss_pred             C
Confidence            6

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=6.5e-24  Score=207.62  Aligned_cols=223  Identities=18%  Similarity=0.233  Sum_probs=183.2

Q ss_pred             cccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC
Q 004290           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (763)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~  105 (763)
                      .++.+-+.+  ..+.+.+.+|+||...|+.+.|+|+...+++++.|..|+||........... ..|..+|+.+..+|. 
T Consensus       239 ~d~~av~~d--~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~-~~h~~~V~~ls~h~t-  314 (506)
T KOG0289|consen  239 EDKTAVLFD--KPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS-RPHEEPVTGLSLHPT-  314 (506)
T ss_pred             CCCceEEEe--cchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc-ccccccceeeeeccC-
Confidence            444555555  4555678899999999999999999999999999999999999877766666 789999999999999 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee--cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (763)
Q Consensus       106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~  183 (763)
                       |.||++++.|++..+.|++.+..          +....  ...-.+++.+|+| ++.+|.+|..||.|+|||+..+.  
T Consensus       315 -geYllsAs~d~~w~Fsd~~~g~~----------lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~--  380 (506)
T KOG0289|consen  315 -GEYLLSASNDGTWAFSDISSGSQ----------LTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQT--  380 (506)
T ss_pred             -CcEEEEecCCceEEEEEccCCcE----------EEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCcc--
Confidence             89999999999999999997431          22221  1223589999999 77999999999999999998875  


Q ss_pred             CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004290          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (763)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (763)
                                             .+..+++|..+|.+|+|+.+ |.+||+++.|+.|++||+|..+.+.++..+      
T Consensus       381 -----------------------~~a~Fpght~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~n~kt~~l~------  430 (506)
T KOG0289|consen  381 -----------------------NVAKFPGHTGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLKNFKTIQLD------  430 (506)
T ss_pred             -----------------------ccccCCCCCCceeEEEeccC-ceEEEEEecCCeEEEEEehhhcccceeecc------
Confidence                                   24556789999999999996 899999999999999999988765544211      


Q ss_pred             ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                                    ....+.++.|.+.|.+|++++.|=.|++++-.+
T Consensus       431 --------------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~  463 (506)
T KOG0289|consen  431 --------------EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT  463 (506)
T ss_pred             --------------ccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence                          111499999999999999998887888776554

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=2.6e-24  Score=197.78  Aligned_cols=268  Identities=18%  Similarity=0.234  Sum_probs=207.2

Q ss_pred             CCCchhhhhhccccCCC--cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004290            7 HDGSIYDMLDTRHTDTR--PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL   84 (763)
Q Consensus         7 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~   84 (763)
                      |...++++.++|+-+.-  ..-+....+|-  .-..+.+.+++||++.|+|+..+-+.++|++|+.|.+++|||+++|++
T Consensus         9 HERplTqiKyN~eGDLlFscaKD~~~~vw~--s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~   86 (327)
T KOG0643|consen    9 HERPLTQIKYNREGDLLFSCAKDSTPTVWY--SLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ   86 (327)
T ss_pred             CccccceEEecCCCcEEEEecCCCCceEEE--ecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence            46677888888876553  44566666665  556788999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCceEEEEEeeCCCCcEEEEEeC-----CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC
Q 004290           85 LHSIETGHSANVFCTKFVPETSDELVVSGAG-----DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN  159 (763)
Q Consensus        85 ~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  159 (763)
                      +..+  ....+|..+.|++.  |++++.+..     .+.|.++|++.....   ....+|...+..+...++.+.|.| -
T Consensus        87 la~~--k~~~~Vk~~~F~~~--gn~~l~~tD~~mg~~~~v~~fdi~~~~~~---~~s~ep~~kI~t~~skit~a~Wg~-l  158 (327)
T KOG0643|consen   87 LATW--KTNSPVKRVDFSFG--GNLILASTDKQMGYTCFVSVFDIRDDSSD---IDSEEPYLKIPTPDSKITSALWGP-L  158 (327)
T ss_pred             EEEe--ecCCeeEEEeeccC--CcEEEEEehhhcCcceEEEEEEccCChhh---hcccCceEEecCCccceeeeeecc-c
Confidence            9988  35678999999999  677766553     467999999864321   122356788888899999999999 6


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCc
Q 004290          160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF  239 (763)
Q Consensus       160 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~  239 (763)
                      +.+|++|.+||.|.+||+++++..                        +.....|...|+.++++|+ ..+|++++.|.+
T Consensus       159 ~~~ii~Ghe~G~is~~da~~g~~~------------------------v~s~~~h~~~Ind~q~s~d-~T~FiT~s~Dtt  213 (327)
T KOG0643|consen  159 GETIIAGHEDGSISIYDARTGKEL------------------------VDSDEEHSSKINDLQFSRD-RTYFITGSKDTT  213 (327)
T ss_pred             CCEEEEecCCCcEEEEEcccCcee------------------------eechhhhccccccccccCC-cceEEecccCcc
Confidence            689999999999999999998632                        2223346778999999998 689999999999


Q ss_pred             EEEEeCCCCCCCcccCCCCC-------C---------C---Ccccc-----------cccccc-----cCCCCCccceeE
Q 004290          240 ARLYDRRMLPPLTSCQKRMS-------P---------P---PCVNY-----------FCPMHL-----SEHGRSSLHLTH  284 (763)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~-------~---------~---~~~~~-----------~~~~~~-----~~~g~~~~~i~~  284 (763)
                      -++||.++.+.+.++.....       |         .   ..+.+           |....+     ...||-+ +|++
T Consensus       214 akl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINs  292 (327)
T KOG0643|consen  214 AKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINS  292 (327)
T ss_pred             ceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-Ccce
Confidence            99999999887666543211       0         0   00000           000000     1156777 7999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          285 VTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       285 v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      |+|+|+|+..++|+.||.|++.-...
T Consensus       293 vAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  293 VAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             eEECCCCcccccCCCCceEEEEEecc
Confidence            99999999999999999999986554

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=1.3e-23  Score=195.50  Aligned_cols=222  Identities=15%  Similarity=0.241  Sum_probs=169.2

Q ss_pred             eccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCe------------EE--EEEccCCCCceEEEEEeeCCCCcEE
Q 004290           46 LEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK------------LL--HSIETGHSANVFCTKFVPETSDELV  110 (763)
Q Consensus        46 l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~------------~~--~~~~~~h~~~V~~v~~~p~~~~~~l  110 (763)
                      -+-|.+.|++|...+ .|+++++|+.||.|.|||+++..            ++  +.-..+|...|.++.|.|-. ..+|
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D-tGmF  117 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID-TGMF  117 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec-Ccee
Confidence            356899999999988 68999999999999999997532            11  11124788999999999974 5689


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC--CEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004290          111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (763)
Q Consensus       111 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~  188 (763)
                      .+++.|.++++||.++.+          ....|+ ..+.|++-+++|-..  -++++|..|-.|++.|+.++...     
T Consensus       118 tssSFDhtlKVWDtnTlQ----------~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s-----  181 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQ----------EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS-----  181 (397)
T ss_pred             ecccccceEEEeecccce----------eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce-----
Confidence            999999999999999832          233343 667899999988532  36778888899999999988622     


Q ss_pred             CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC-CCcccCCCCCCCCccccc
Q 004290          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYF  267 (763)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~  267 (763)
                                          ....+|...|.++.|+|...-.|++|+.||.||+||+|... .+..+....       ..
T Consensus       182 --------------------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn-------~k  234 (397)
T KOG4283|consen  182 --------------------HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN-------TK  234 (397)
T ss_pred             --------------------eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc-------Cc
Confidence                                23357889999999999877789999999999999999652 222222111       00


Q ss_pred             cccccc-CCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          268 CPMHLS-EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       268 ~~~~~~-~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      .+..+. ...|.+ .|++++|..++.++++.+.|..+++|+..++.
T Consensus       235 ~~p~~~~n~ah~g-kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  235 RPPILKTNTAHYG-KVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             cCccccccccccc-eeeeeeecccchhhhhccCccceEEeecccCc
Confidence            111111 123444 69999999999999999999999999998864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.7e-24  Score=207.89  Aligned_cols=165  Identities=15%  Similarity=0.187  Sum_probs=135.4

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      ..|+..|+-+.|+++  |++|||++.|.+..||.+.....       .+..+++.+|..+|..+.|+| +.+++++|+.|
T Consensus       221 ~~htdEVWfl~FS~n--GkyLAsaSkD~Taiiw~v~~d~~-------~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~  290 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSHN--GKYLASASKDSTAIIWIVVYDVH-------FKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFD  290 (519)
T ss_pred             hhCCCcEEEEEEcCC--CeeEeeccCCceEEEEEEecCcc-------eeeeeeeecccCceEEEEECC-CCCeEEecCch
Confidence            789999999999999  89999999999999999885322       355788899999999999999 55888899999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      ..+.+||+.++....                        ....++...+.+++|.|+ +..|++|+.|+.|..||+....
T Consensus       291 e~~~lwDv~tgd~~~------------------------~y~~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDgn~  345 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRH------------------------LYPSGLGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLDGNI  345 (519)
T ss_pred             HheeeccCCcchhhh------------------------hcccCcCCCcceeEEccC-CceeEecCCCCcEEEecCCcch
Confidence            999999999987431                        111124578899999998 7899999999999999997432


Q ss_pred             CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                       +..                    +.|-+...|.+++..+||+++++.+.|..|++++..+
T Consensus       346 -~~~--------------------W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~  385 (519)
T KOG0293|consen  346 -LGN--------------------WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA  385 (519)
T ss_pred             -hhc--------------------ccccccceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence             111                    1223333599999999999999999999999998766

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.6e-24  Score=207.22  Aligned_cols=221  Identities=16%  Similarity=0.275  Sum_probs=182.1

Q ss_pred             CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~  102 (763)
                      ++++|..+++|+  +..-.++.+|+.|.+.|+.|++..  ..++++++|++|+.|.++. ..++++  ...+.+..+.-+
T Consensus        84 SGs~DG~VkiWn--lsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~ti--lg~s~~~gIdh~  156 (433)
T KOG0268|consen   84 SGSCDGEVKIWN--LSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTI--LGKSVYLGIDHH  156 (433)
T ss_pred             ccccCceEEEEe--hhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceee--eccccccccccc
Confidence            578999999999  666678999999999999999986  6788999999999999875 466666  234567777777


Q ss_pred             eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      ..  +..++||+.  .|.|||.+.          ..|+..+.--.+.|.++.|+|....+|++|+.|+.|.+||+|+.++
T Consensus       157 ~~--~~~FaTcGe--~i~IWD~~R----------~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P  222 (433)
T KOG0268|consen  157 RK--NSVFATCGE--QIDIWDEQR----------DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP  222 (433)
T ss_pred             cc--cccccccCc--eeeeccccc----------CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc
Confidence            76  688999986  599999986          3568888877889999999998888999999999999999999875


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (763)
                      ..          .++.+.                .-+.|+|+| +...|++|+.|..++.||+|..+.-           
T Consensus       223 l~----------KVi~~m----------------RTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p-----------  264 (433)
T KOG0268|consen  223 LK----------KVILTM----------------RTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRP-----------  264 (433)
T ss_pred             cc----------eeeeec----------------cccceecCc-cccceeeccccccceehhhhhhccc-----------
Confidence            52          222222                346799999 5889999999999999999976521           


Q ss_pred             cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                       +..+       .+|-+ .|..|.|||.|+.+++|+-|.+|+||.++.+
T Consensus       265 -~~v~-------~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  265 -LNVH-------KDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             -chhh-------cccce-eEEEeccCCCcchhccccccceEEEeecCCC
Confidence             1111       34555 5999999999999999999999999999885

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=4e-23  Score=209.69  Aligned_cols=218  Identities=16%  Similarity=0.255  Sum_probs=156.9

Q ss_pred             cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004290           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (763)
Q Consensus        42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i  121 (763)
                      +...++||++.|.+|...|.|.+||+|+.||+|+||.+.||.|++++.  ..+.|.|++|+|..+-..||++ ....+.|
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA-~~~~~~i  468 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVA-VGECVLI  468 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEE-ecCceEE
Confidence            446789999999999999999999999999999999999999999983  5678999999998733344444 4444767


Q ss_pred             EECCCCCCCC-------C--C---C------CCC---------CCceeeecccCceeEEEEecCCCCEEEEEeCC---Cc
Q 004290          122 FNLSRFSGRG-------L--D---D------NAI---------TPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GT  171 (763)
Q Consensus       122 wd~~~~~~~~-------~--~---~------~~~---------~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d---g~  171 (763)
                      .+..-+....       +  .   .      ..+         .-+.....|...|+.|.|+- .|.+|++...+   ..
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~  547 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKS  547 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcce
Confidence            6655331100       0  0   0      000         01234446889999999998 66898887654   46


Q ss_pred             EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 004290          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (763)
Q Consensus       172 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~  251 (763)
                      |.|.++......                         .-+....+.|.++.|+|..+ +|++++ -..|||||+.....+
T Consensus       548 VliHQLSK~~sQ-------------------------~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kqelv  600 (733)
T KOG0650|consen  548 VLIHQLSKRKSQ-------------------------SPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQELV  600 (733)
T ss_pred             EEEEeccccccc-------------------------CchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHHHHH
Confidence            888888765421                         11223356788999999854 566655 468999999875433


Q ss_pred             cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ..+.                     ....+|..++.+|.|..|+.++.|+.+..||+.-.
T Consensus       601 KkL~---------------------tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls  639 (733)
T KOG0650|consen  601 KKLL---------------------TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS  639 (733)
T ss_pred             HHHh---------------------cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence            2221                     11126999999999999999999999999998763

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=3.1e-24  Score=201.82  Aligned_cols=257  Identities=18%  Similarity=0.233  Sum_probs=206.7

Q ss_pred             CCcccccccccchhhhhcccccee------eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCc
Q 004290           22 TRPDVNHSLQMHSSLVRRLSQERE------LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN   95 (763)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~------l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~   95 (763)
                      .+.+.+.-|.+|+....+++.-..      |.-|.++|.|+.||.|.++||+|+.||.|+||.+++|.|++.|...|+..
T Consensus       229 vsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkG  308 (508)
T KOG0275|consen  229 VSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKG  308 (508)
T ss_pred             eeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccC
Confidence            345677888899877666543333      33478899999999999999999999999999999999999998899999


Q ss_pred             eEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004290           96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (763)
Q Consensus        96 V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iw  175 (763)
                      |+|+.|+.+  +..+++++.|.+++|.-+..+          +++..+.+|...|+...|.+ +++.+++++.||+|++|
T Consensus       309 vt~l~FSrD--~SqiLS~sfD~tvRiHGlKSG----------K~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW  375 (508)
T KOG0275|consen  309 VTCLSFSRD--NSQILSASFDQTVRIHGLKSG----------KCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVW  375 (508)
T ss_pred             eeEEEEccC--cchhhcccccceEEEeccccc----------hhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEe
Confidence            999999999  789999999999999999873          45899999999999999999 67899999999999999


Q ss_pred             ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccC
Q 004290          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (763)
Q Consensus       176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~  255 (763)
                      +..+.++..           .+            ...+...+|+++..-|.++..++++...++|.|.++.. +.     
T Consensus       376 ~~KtteC~~-----------Tf------------k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-Qv-----  426 (508)
T KOG0275|consen  376 HGKTTECLS-----------TF------------KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QV-----  426 (508)
T ss_pred             cCcchhhhh-----------hc------------cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eE-----
Confidence            999877431           11            11234568899999998899999999999999998863 33     


Q ss_pred             CCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004290          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (763)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (763)
                              ++.|..+..     .++..-+.+.||.|.++++.+.|+.++.|.+.+++.......+...+-.++.+|-.
T Consensus       427 --------VrsfsSGkR-----EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHq  491 (508)
T KOG0275|consen  427 --------VRSFSSGKR-----EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQ  491 (508)
T ss_pred             --------EeeeccCCc-----cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCccc
Confidence                    333322221     11246677899999999999999999999999987655555555555556666643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.2e-22  Score=188.64  Aligned_cols=160  Identities=18%  Similarity=0.201  Sum_probs=128.1

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC-
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-  168 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~-  168 (763)
                      ..-...|+++.|+++  |.++++++.|.+|+|||...+          ..+.++..++-.|..+.|.... ..++.++. 
T Consensus        11 ~~~~~~i~sl~fs~~--G~~litss~dDsl~LYd~~~g----------~~~~ti~skkyG~~~~~Fth~~-~~~i~sStk   77 (311)
T KOG1446|consen   11 RETNGKINSLDFSDD--GLLLITSSEDDSLRLYDSLSG----------KQVKTINSKKYGVDLACFTHHS-NTVIHSSTK   77 (311)
T ss_pred             ccCCCceeEEEecCC--CCEEEEecCCCeEEEEEcCCC----------ceeeEeecccccccEEEEecCC-ceEEEccCC
Confidence            345678999999999  899999999999999999974          3366777777788888987634 44445554 


Q ss_pred             -CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          169 -DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       169 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                       |.+|+..++.+++                         .+..+++|...|++++.+|- ++.+++++.|++||+||+|.
T Consensus        78 ~d~tIryLsl~dNk-------------------------ylRYF~GH~~~V~sL~~sP~-~d~FlS~S~D~tvrLWDlR~  131 (311)
T KOG1446|consen   78 EDDTIRYLSLHDNK-------------------------YLRYFPGHKKRVNSLSVSPK-DDTFLSSSLDKTVRLWDLRV  131 (311)
T ss_pred             CCCceEEEEeecCc-------------------------eEEEcCCCCceEEEEEecCC-CCeEEecccCCeEEeeEecC
Confidence             8899999998875                         46677899999999999997 58999999999999999996


Q ss_pred             CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .+...-+.                      .. .-..++|.|.|-++|++...+.|++||++..
T Consensus       132 ~~cqg~l~----------------------~~-~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~  172 (311)
T KOG1446|consen  132 KKCQGLLN----------------------LS-GRPIAAFDPEGLIFALANGSELIKLYDLRSF  172 (311)
T ss_pred             CCCceEEe----------------------cC-CCcceeECCCCcEEEEecCCCeEEEEEeccc
Confidence            54321110                      00 2344789999999999999889999999984

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=1.7e-23  Score=206.91  Aligned_cols=243  Identities=19%  Similarity=0.272  Sum_probs=188.9

Q ss_pred             ccccccchhhhh--------ccccceeeccccCceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCCeE------EEEEccC
Q 004290           27 NHSLQMHSSLVR--------RLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKL------LHSIETG   91 (763)
Q Consensus        27 ~~~~~~~~~~~~--------~~~~~~~l~gH~~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~~~------~~~~~~~   91 (763)
                      ...+.+++....        ..++-..|.||++.=.+|+|++.. -.|++|+.|++|++||+.....      ....+.+
T Consensus       146 ~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~  225 (422)
T KOG0264|consen  146 SGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG  225 (422)
T ss_pred             CCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeec
Confidence            345666664322        234455899999988899999854 4789999999999999975322      2334479


Q ss_pred             CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc
Q 004290           92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT  171 (763)
Q Consensus        92 h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~  171 (763)
                      |...|..++|+|.. ..+|++++.|+.+.|||.++..        .++.....+|.+.|+|++|+|.++.+|||||.|++
T Consensus       226 h~~~VeDV~~h~~h-~~lF~sv~dd~~L~iwD~R~~~--------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t  296 (422)
T KOG0264|consen  226 HEDVVEDVAWHPLH-EDLFGSVGDDGKLMIWDTRSNT--------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT  296 (422)
T ss_pred             CCcceehhhccccc-hhhheeecCCCeEEEEEcCCCC--------CCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence            99999999999986 7899999999999999999621        25577788999999999999999999999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 004290          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (763)
Q Consensus       172 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~  251 (763)
                      |.+||+|+...                        .+..+.+|...|..+.|+|.....||+++.|+.+.|||+......
T Consensus       297 V~LwDlRnL~~------------------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e  352 (422)
T KOG0264|consen  297 VALWDLRNLNK------------------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE  352 (422)
T ss_pred             EEEeechhccc------------------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence            99999998763                        355566789999999999998899999999999999999864432


Q ss_pred             cccCC-CCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEE-EeCCCeEEEEECCC
Q 004290          252 TSCQK-RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL-SYSGEHVYLMDVNH  310 (763)
Q Consensus       252 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~-~s~d~~i~iwd~~~  310 (763)
                      ..... ...|++.+       +.-.||.. .|+.+.|+|+..++++ .+.|+.+.||.+..
T Consensus       353 q~~eda~dgppEll-------F~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  353 QSPEDAEDGPPELL-------FIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cChhhhccCCccee-------EEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            22111 11111111       11146666 5999999999887654 56699999999875

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=8.8e-22  Score=196.11  Aligned_cols=270  Identities=16%  Similarity=0.186  Sum_probs=184.9

Q ss_pred             ceeeccccCceEEEEeCCCCCEEEEEeCCC--------cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004290           43 ERELEGHQGCVNAISWNSKGSLLISGSDDT--------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (763)
Q Consensus        43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~--------~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s  114 (763)
                      .+.+.||+..|.|++.+|+.-++++|-.-|        .|+|||..+-..+..+ ......|.|++|++.+.|.+|+...
T Consensus        97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~-g~f~~GV~~vaFsk~~~G~~l~~vD  175 (626)
T KOG2106|consen   97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVI-GFFDRGVTCVAFSKINGGSLLCAVD  175 (626)
T ss_pred             cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeee-ccccccceeeeecccCCCceEEEec
Confidence            455679999999999999999999876555        4999998888878777 4667789999999976566666643


Q ss_pred             --CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCC--------
Q 004290          115 --GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP--------  184 (763)
Q Consensus       115 --~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~--------  184 (763)
                        .+..+.+||...+.          .....+.-...|....|+|.+++++++++. +.+.+|+++.+....        
T Consensus       176 ~s~~h~lSVWdWqk~~----------~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~  244 (626)
T KOG2106|consen  176 DSNPHMLSVWDWQKKA----------KLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKR  244 (626)
T ss_pred             CCCccccchhhchhhh----------ccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccc
Confidence              35568899998632          234455566778888999999999988875 889999998875431        


Q ss_pred             --------------CCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 004290          185 --------------PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (763)
Q Consensus       185 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~  250 (763)
                                    ...++.......+|+........ ... .|.+.|.+++.-.+ | .|++|+.|..|..|| ...+.
T Consensus       245 ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k-~~~-aH~ggv~~L~~lr~-G-tllSGgKDRki~~Wd-~~y~k  319 (626)
T KOG2106|consen  245 EKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISK-QVH-AHDGGVFSLCMLRD-G-TLLSGGKDRKIILWD-DNYRK  319 (626)
T ss_pred             cceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEe-Eee-ecCCceEEEEEecC-c-cEeecCccceEEecc-ccccc
Confidence                          11222233445555553332221 122 78899999999986 4 677799999999999 44444


Q ss_pred             CcccCCCCC--CCCccccc-------------ccc------cccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004290          251 LTSCQKRMS--PPPCVNYF-------------CPM------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (763)
Q Consensus       251 ~~~~~~~~~--~~~~~~~~-------------~~~------~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~  309 (763)
                      +.....+..  +.+.+..-             ..+      .+...||.. ....++.+|+...+++++.|+.+++|+  
T Consensus       320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--  396 (626)
T KOG2106|consen  320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--  396 (626)
T ss_pred             cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--
Confidence            333322221  11111000             000      011245655 588999999999999999999999999  


Q ss_pred             CCCccceEeecCCCCeeeeeccCC
Q 004290          310 HAGGRAMRYTVGDASKIMSFTPTL  333 (763)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~p~~  333 (763)
                       ..++.-......+.....|+|.+
T Consensus       397 -~~k~~wt~~~~d~~~~~~fhpsg  419 (626)
T KOG2106|consen  397 -DHKLEWTKIIEDPAECADFHPSG  419 (626)
T ss_pred             -CCceeEEEEecCceeEeeccCcc
Confidence             23344444456667777788753

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.1e-23  Score=209.62  Aligned_cols=248  Identities=21%  Similarity=0.306  Sum_probs=195.3

Q ss_pred             cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCC
Q 004290           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD  107 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~  107 (763)
                      .+++++.  .......+++.-..+.|.++.|..||++||.|...|.|+|+|..+...++.+ .+|..+|..+.|+|.. +
T Consensus        48 ~rvqly~--~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~~d-~  123 (487)
T KOG0310|consen   48 VRVQLYS--SVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL-YAHQAPVHVTKFSPQD-N  123 (487)
T ss_pred             cEEEEEe--cchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH-hhccCceeEEEecccC-C
Confidence            3455554  3444455556667789999999999999999999999999997665566666 7999999999999985 7


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290          108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG  187 (763)
Q Consensus       108 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  187 (763)
                      ..|++|+.|+.+++||+.+..          ....+.+|++.|.|.+|+|.++++++|||.||+|++||++.....    
T Consensus       124 t~l~s~sDd~v~k~~d~s~a~----------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~----  189 (487)
T KOG0310|consen  124 TMLVSGSDDKVVKYWDLSTAY----------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR----  189 (487)
T ss_pred             eEEEecCCCceEEEEEcCCcE----------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce----
Confidence            899999999999999999732          245788999999999999998899999999999999999986411    


Q ss_pred             CCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccc
Q 004290          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (763)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  267 (763)
                               +..            -.|..+|-++.+-|. |.+|++++ ...|++||+-++..+....            
T Consensus       190 ---------v~e------------lnhg~pVe~vl~lps-gs~iasAg-Gn~vkVWDl~~G~qll~~~------------  234 (487)
T KOG0310|consen  190 ---------VVE------------LNHGCPVESVLALPS-GSLIASAG-GNSVKVWDLTTGGQLLTSM------------  234 (487)
T ss_pred             ---------eEE------------ecCCCceeeEEEcCC-CCEEEEcC-CCeEEEEEecCCceehhhh------------
Confidence                     111            135678999999996 67787776 4689999999664331110            


Q ss_pred             ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCCCcc
Q 004290          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE  337 (763)
Q Consensus       268 ~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  337 (763)
                             ..|.. .|||+++..++..|++++-|+.|++||+.+ -.......-..++-.++.+|+...+.
T Consensus       235 -------~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~-~Kvv~s~~~~~pvLsiavs~dd~t~v  295 (487)
T KOG0310|consen  235 -------FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTN-YKVVHSWKYPGPVLSIAVSPDDQTVV  295 (487)
T ss_pred             -------hcccc-eEEEEEeecCCceEeecccccceEEEEccc-eEEEEeeecccceeeEEecCCCceEE
Confidence                   11333 599999999999999999999999999766 44555566677777888888655553

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.5e-22  Score=189.06  Aligned_cols=224  Identities=16%  Similarity=0.193  Sum_probs=156.9

Q ss_pred             ceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC-----eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (763)
Q Consensus        43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg  117 (763)
                      +..|+||.+.|++++|+.||++|||++.|+.|+||++..-     ++++.-  -.-+..+.+.|.|+. ..+++++....
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dhpT~V~FapDc-~s~vv~~~~g~  155 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDHPTRVVFAPDC-KSVVVSVKRGN  155 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCCceEEEECCCc-ceEEEEEccCC
Confidence            3467899999999999999999999999999999998752     222221  112356889999996 56777777778


Q ss_pred             cEEEEECCCCCCCCCC--CCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290          118 EVRLFNLSRFSGRGLD--DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  195 (763)
                      ++++|.+.........  ...+.-...-+.|.-.|..+-... ++.+|++++.|..|.+|+++ ++.+..+         
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~i---------  224 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSI---------  224 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeee---------
Confidence            8999988753221100  000011112234666677776654 77899999999999999998 5433111         


Q ss_pred             EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (763)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (763)
                                      ......-+..+.+|+ |..+++++.-.-|++|.+--.+.- ++      .+..+.     +...
T Consensus       225 ----------------dtnq~~n~~aavSP~-GRFia~~gFTpDVkVwE~~f~kdG-~f------qev~rv-----f~Lk  275 (420)
T KOG2096|consen  225 ----------------DTNQSSNYDAAVSPD-GRFIAVSGFTPDVKVWEPIFTKDG-TF------QEVKRV-----FSLK  275 (420)
T ss_pred             ----------------ccccccccceeeCCC-CcEEEEecCCCCceEEEEEeccCc-ch------hhhhhh-----heec
Confidence                            111233467889997 799999999999999987533210 00      011111     2226


Q ss_pred             CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       276 g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      ||.. .|+.++|+|+.+.+++.+.||+++|||++-
T Consensus       276 GH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  276 GHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             cchh-heeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            7877 599999999999999999999999999876

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.9e-22  Score=188.06  Aligned_cols=194  Identities=14%  Similarity=0.172  Sum_probs=129.4

Q ss_pred             EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEe-cCCCCEE
Q 004290           85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGNPHVV  163 (763)
Q Consensus        85 ~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-p~~~~~l  163 (763)
                      +..|..+|..-|.++.|.+.  |+.+++|+.|++|+|||.+...+.      +.+....+.|.+.|..|.|. |.=|+.+
T Consensus         5 ~~pi~s~h~DlihdVs~D~~--GRRmAtCSsDq~vkI~d~~~~s~~------W~~Ts~Wrah~~Si~rV~WAhPEfGqvv   76 (361)
T KOG2445|consen    5 MAPIDSGHKDLIHDVSFDFY--GRRMATCSSDQTVKIWDSTSDSGT------WSCTSSWRAHDGSIWRVVWAHPEFGQVV   76 (361)
T ss_pred             ccccccCCcceeeeeeeccc--CceeeeccCCCcEEEEeccCCCCc------eEEeeeEEecCCcEEEEEecCccccceE
Confidence            34455789999999999999  899999999999999998764433      46677889999999999994 5557899


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC-CcEEEEEeCCCcEEE
Q 004290          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARL  242 (763)
Q Consensus       164 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~sgs~Dg~i~i  242 (763)
                      ++++.|+++.||.-.....         ++...-|       ............|+.+.|.|.. |-.||+++.||++||
T Consensus        77 A~cS~Drtv~iWEE~~~~~---------~~~~~~W-------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRI  140 (361)
T KOG2445|consen   77 ATCSYDRTVSIWEEQEKSE---------EAHGRRW-------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRI  140 (361)
T ss_pred             EEEecCCceeeeeeccccc---------cccccee-------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEE
Confidence            9999999999997532210         0100001       1112222345789999999953 567999999999999


Q ss_pred             EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC---CCEEEEEeCC-----CeEEEEECCC
Q 004290          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSG-----EHVYLMDVNH  310 (763)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd---g~~l~~~s~d-----~~i~iwd~~~  310 (763)
                      |+...--.+.......       .+... ..+.+....+..||.|+|.   ..+|++|+.+     +.++||....
T Consensus       141 YEA~dp~nLs~W~Lq~-------Ei~~~-~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e  208 (361)
T KOG2445|consen  141 YEAPDPMNLSQWTLQH-------EIQNV-IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE  208 (361)
T ss_pred             EecCCccccccchhhh-------hhhhc-cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence            9986543322211000       00000 0011222225788999874   4567777654     3666665544

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.5e-22  Score=189.22  Aligned_cols=182  Identities=16%  Similarity=0.222  Sum_probs=137.0

Q ss_pred             EEEEeCCCcEEEEeCCCC------------eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004290           65 LISGSDDTHINVWSYSSR------------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  132 (763)
Q Consensus        65 Lasgs~D~~v~iWd~~~~------------~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~  132 (763)
                      |+.|++...|.-+++.-.            ..+..+ ..|.++|++++.+    +.++++|+.|-+|+|||++..     
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~-~aH~~sitavAVs----~~~~aSGssDetI~IYDm~k~-----   73 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAF-SAHAGSITALAVS----GPYVASGSSDETIHIYDMRKR-----   73 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccc-cccccceeEEEec----ceeEeccCCCCcEEEEeccch-----
Confidence            556666655555544211            123334 6899999999997    689999999999999999973     


Q ss_pred             CCCCCCCceeeecccCceeEEEEecCC-CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCC
Q 004290          133 DDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (763)
Q Consensus       133 ~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (763)
                           ..+..+..|.+.|+++.|.+.- ...|++|+.||.|.+|+.....                         .+...
T Consensus        74 -----~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-------------------------~~~sl  123 (362)
T KOG0294|consen   74 -----KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-------------------------LLKSL  123 (362)
T ss_pred             -----hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-------------------------Eeeee
Confidence                 3367788899999999998732 1267899999999999988764                         23344


Q ss_pred             CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC
Q 004290          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (763)
Q Consensus       212 ~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg  291 (763)
                      .+|...|+.++.+|. +++-++.+.|+.+++||+-.++.-..+.-                   ++   .-+.|.|+|.|
T Consensus       124 K~H~~~Vt~lsiHPS-~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-------------------~~---~at~v~w~~~G  180 (362)
T KOG0294|consen  124 KAHKGQVTDLSIHPS-GKLALSVGGDQVLRTWNLVRGRVAFVLNL-------------------KN---KATLVSWSPQG  180 (362)
T ss_pred             cccccccceeEecCC-CceEEEEcCCceeeeehhhcCccceeecc-------------------CC---cceeeEEcCCC
Confidence            567888999999997 68888999999999999988764322210                   01   14559999999


Q ss_pred             CEEEEEeCCCeEEEEECCC
Q 004290          292 EEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       292 ~~l~~~s~d~~i~iwd~~~  310 (763)
                      .+++.++.+ .|-+|.+.+
T Consensus       181 d~F~v~~~~-~i~i~q~d~  198 (362)
T KOG0294|consen  181 DHFVVSGRN-KIDIYQLDN  198 (362)
T ss_pred             CEEEEEecc-EEEEEeccc
Confidence            988877665 678887766

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.91  E-value=1.2e-23  Score=197.09  Aligned_cols=89  Identities=20%  Similarity=0.298  Sum_probs=81.3

Q ss_pred             eeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEE-ecC-CcceEEEEeeCCCCeEEEEeCCCcEEEEc
Q 004290          620 VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKML-LGD-EAVVNCVQCHPFDCVVATSGIDNTIKIWT  697 (763)
Q Consensus       620 ~gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l-~gH-~~~V~~v~~sp~~~~laS~s~D~~IrvW~  697 (763)
                      .+|...+++++    +|+.|++-++||.||.|+|||--+++|++++ ++| ...|+++.|..+++++.|+|.|.+||+|.
T Consensus       258 ~qht~ai~~V~----Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE  333 (430)
T KOG0640|consen  258 DQHTGAITQVR----YSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE  333 (430)
T ss_pred             cccccceeEEE----ecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence            35888899888    9999999999999999999999999999998 568 56899999999999999999999999999


Q ss_pred             CCCCCCccccCCCCC
Q 004290          698 PSASVPSIVSGGAAG  712 (763)
Q Consensus       698 ~~~~~~~~~~~g~~~  712 (763)
                      +.++.++..+.|...
T Consensus       334 i~t~R~l~~YtGAg~  348 (430)
T KOG0640|consen  334 ISTGRMLKEYTGAGT  348 (430)
T ss_pred             ecCCceEEEEecCCc
Confidence            999999998876643

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=4.6e-23  Score=187.26  Aligned_cols=239  Identities=16%  Similarity=0.165  Sum_probs=187.2

Q ss_pred             Ccccccccccchhhhhcc-ccceeeccccCceEEEEeCC--CCCEEEEEeCCCcEEEEeCCCCeE--EEEEccCCCCceE
Q 004290           23 RPDVNHSLQMHSSLVRRL-SQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVF   97 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~-~~~~~l~gH~~~V~~l~fsp--~g~~Lasgs~D~~v~iWd~~~~~~--~~~~~~~h~~~V~   97 (763)
                      +...|+.++|...--... +++.+|+||.++|..++|-.  -|.+|||++.||.|.||.-++++-  .... ..|...|+
T Consensus        28 TcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~-~~h~~SVN  106 (299)
T KOG1332|consen   28 TCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH-AAHSASVN  106 (299)
T ss_pred             eecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh-hhhcccce
Confidence            456788899887544443 78899999999999999965  799999999999999999988853  3344 67999999


Q ss_pred             EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC--C-----------CEEE
Q 004290           98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN--P-----------HVVW  164 (763)
Q Consensus        98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~--~-----------~~l~  164 (763)
                      +++|.|..-|-.|++++.||.|.|.+.+...+       +.......+|.-.|+++.|.|..  +           ..|+
T Consensus       107 sV~wapheygl~LacasSDG~vsvl~~~~~g~-------w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlv  179 (299)
T KOG1332|consen  107 SVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-------WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV  179 (299)
T ss_pred             eecccccccceEEEEeeCCCcEEEEEEcCCCC-------ccchhhhhccccccceeeecCcCCCccccccCcccccceee
Confidence            99999987688999999999999999987422       23355667899999999999841  1           4699


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCC---cEEEEEeCCCcEE
Q 004290          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGSDAFAR  241 (763)
Q Consensus       165 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~---~~l~sgs~Dg~i~  241 (763)
                      +|+.|..|+||+....+-.                       .-..+.+|...|..++|.|..+   .+||+++.||++.
T Consensus       180 SgGcDn~VkiW~~~~~~w~-----------------------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi  236 (299)
T KOG1332|consen  180 SGGCDNLVKIWKFDSDSWK-----------------------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI  236 (299)
T ss_pred             ccCCccceeeeecCCcchh-----------------------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence            9999999999998875311                       1122467899999999999642   5899999999999


Q ss_pred             EEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      ||-.+....-.+               ..-+  +.... .+..+.||+.|..|++++.|+.|.+|.-+.
T Consensus       237 Iwt~~~e~e~wk---------------~tll--~~f~~-~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  237 IWTKDEEYEPWK---------------KTLL--EEFPD-VVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             EEEecCccCccc---------------cccc--ccCCc-ceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            998773211000               0000  01122 599999999999999999999999997655

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=1.1e-22  Score=200.92  Aligned_cols=237  Identities=14%  Similarity=0.194  Sum_probs=189.7

Q ss_pred             ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (763)
Q Consensus        47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~  126 (763)
                      ++|...|.+++.|+||++||+|+.|..|.||+.++.+.++.+ .+|.+.|.+++|-..  ...|++++.|+.|++|+++.
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKG--TSELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecC--ccceeeeecCCceEEEehhH
Confidence            389999999999999999999999999999999999999998 899999999999988  58899999999999999996


Q ss_pred             CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (763)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (763)
                                ...+.++.+|.+.|..|.... -...+.+|+.|+++++|++......                       
T Consensus       276 ----------~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesql-----------------------  321 (479)
T KOG0299|consen  276 ----------LSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQL-----------------------  321 (479)
T ss_pred             ----------hHHHHHHhCCccceeeechhc-ccceEEeccccceeEEEecccccee-----------------------
Confidence                      345788899999999997765 4456656669999999999544321                       


Q ss_pred             eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004290          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (763)
Q Consensus       207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~  286 (763)
                         .+.++...+-|++|-.+  ..|++|+.+|.|.+|++-+.+++.+....+...+..        .+-.+. .+|++|+
T Consensus       322 ---ifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~--------~~~~~~-~Witsla  387 (479)
T KOG0299|consen  322 ---IFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL--------DPVNGN-FWITSLA  387 (479)
T ss_pred             ---eeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeeccccccCCc--------cccccc-cceeeeE
Confidence               12245678899999875  689999999999999999988876654332211100        001111 3899999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCCc---cceEeecCCCCeeeeeccCCC
Q 004290          287 FSPNGEEVLLSYSGEHVYLMDVNHAGG---RAMRYTVGDASKIMSFTPTLN  334 (763)
Q Consensus       287 ~spdg~~l~~~s~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~p~~~  334 (763)
                      ..|...++++|+.+|.|++|.+..+..   +.........++.++|+++++
T Consensus       388 ~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk  438 (479)
T KOG0299|consen  388 VIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGK  438 (479)
T ss_pred             ecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCC
Confidence            999999999999999999999998743   223333466778888888766

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=8.5e-23  Score=191.75  Aligned_cols=246  Identities=21%  Similarity=0.306  Sum_probs=201.8

Q ss_pred             CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeC------CC---------------
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY------SS---------------   81 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~------~~---------------   81 (763)
                      +.+.++...||.  ++..+++..+.||.+.|++++|++.+.++++++.|++..||..      ..               
T Consensus       165 tASADhTA~iWs--~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~  242 (481)
T KOG0300|consen  165 TASADHTARIWS--LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEH  242 (481)
T ss_pred             ecccccceeEEe--eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhc
Confidence            456789999998  8899999999999999999999999999999999999999972      10               


Q ss_pred             ---------------C----eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCcee
Q 004290           82 ---------------R----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL  142 (763)
Q Consensus        82 ---------------~----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  142 (763)
                                     +    ..+..+ .+|...|.++.|...  ++.+++++.|++..+||++++          +++..
T Consensus       243 sDe~~~d~d~~~~sD~~tiRvPl~~l-tgH~~vV~a~dWL~g--g~Q~vTaSWDRTAnlwDVEtg----------e~v~~  309 (481)
T KOG0300|consen  243 SDEHNRDTDSSEKSDGHTIRVPLMRL-TGHRAVVSACDWLAG--GQQMVTASWDRTANLWDVETG----------EVVNI  309 (481)
T ss_pred             ccccccccccccccCCceeeeeeeee-eccccceEehhhhcC--cceeeeeeccccceeeeeccC----------ceecc
Confidence                           0    123344 789999999999998  899999999999999999984          56889


Q ss_pred             eecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEE
Q 004290          143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD  222 (763)
Q Consensus       143 ~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  222 (763)
                      +.+|....+.++-+| ...++++.+.|-+.++||++..-                        ..+..+++|+..|+++.
T Consensus       310 LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI------------------------~sV~VFQGHtdtVTS~v  364 (481)
T KOG0300|consen  310 LTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAI------------------------QSVAVFQGHTDTVTSVV  364 (481)
T ss_pred             ccCcchhccccccCC-cceEEEEeccCceeEeccchhhc------------------------ceeeeecccccceeEEE
Confidence            999999999999999 67899999999999999998432                        34556778999999999


Q ss_pred             EeCCCCcEEEEEeCCCcEEEEeCCCCC-CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 004290          223 ISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE  301 (763)
Q Consensus       223 ~~p~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~  301 (763)
                      |+-+  ..+++|+.|.+|++||++++. ++.++                      ....+++.++.+..++.|+.-..+.
T Consensus       365 F~~d--d~vVSgSDDrTvKvWdLrNMRsplATI----------------------RtdS~~NRvavs~g~~iIAiPhDNR  420 (481)
T KOG0300|consen  365 FNTD--DRVVSGSDDRTVKVWDLRNMRSPLATI----------------------RTDSPANRVAVSKGHPIIAIPHDNR  420 (481)
T ss_pred             EecC--CceeecCCCceEEEeeeccccCcceee----------------------ecCCccceeEeecCCceEEeccCCc
Confidence            9986  589999999999999999764 22222                      1122689999999999898888999


Q ss_pred             eEEEEECCCCCcc----ceEeecCCCCeeeeeccC
Q 004290          302 HVYLMDVNHAGGR----AMRYTVGDASKIMSFTPT  332 (763)
Q Consensus       302 ~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~p~  332 (763)
                      .|++||++.....    ....++...+.+.+|.-.
T Consensus       421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee  455 (481)
T KOG0300|consen  421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE  455 (481)
T ss_pred             eEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence            9999999884421    123445556667777653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=5.4e-23  Score=210.84  Aligned_cols=238  Identities=20%  Similarity=0.208  Sum_probs=192.5

Q ss_pred             cccccccccchhhhhccc----cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEccCCCCceE
Q 004290           24 PDVNHSLQMHSSLVRRLS----QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVF   97 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~----~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~--~~~~~~~~~h~~~V~   97 (763)
                      ++-|..|++|+.--...+    .+..++.|.+.|+.+....+|+.|+|+|.|-+|++|+...+  -++.++ ..|...|.
T Consensus        43 gGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti-r~H~DYVk  121 (735)
T KOG0308|consen   43 GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI-RTHKDYVK  121 (735)
T ss_pred             cCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh-hcccchhe
Confidence            444667777774443332    46788999999999999999999999999999999999877  577777 78999999


Q ss_pred             EEEE-eeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004290           98 CTKF-VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (763)
Q Consensus        98 ~v~~-~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iw  175 (763)
                      |+++ .++  ..++|||+.|+.|.+||++.+..+............+. ++..+|++++.++ .+..|++|+..+.+++|
T Consensus       122 cla~~ak~--~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~w  198 (735)
T KOG0308|consen  122 CLAYIAKN--NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLW  198 (735)
T ss_pred             eeeecccC--ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEe
Confidence            9999 666  68999999999999999997533211111112233344 8999999999998 66899999999999999


Q ss_pred             ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccC
Q 004290          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (763)
Q Consensus       176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~  255 (763)
                      |.++.+.+                         ....+|+..|.++-.+++ |..++++++||+|++||+.-.+.+.++ 
T Consensus       199 Dprt~~ki-------------------------mkLrGHTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgqQrCl~T~-  251 (735)
T KOG0308|consen  199 DPRTCKKI-------------------------MKLRGHTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQQRCLATY-  251 (735)
T ss_pred             ccccccce-------------------------eeeeccccceEEEEEcCC-CCeEeecCCCceEEeeeccccceeeeE-
Confidence            99998632                         223478899999999997 799999999999999999976544333 


Q ss_pred             CCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                                         .-|..+ |+++..+|+-.++++|+.|+.|+.=|+++..
T Consensus       252 -------------------~vH~e~-VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  252 -------------------IVHKEG-VWALQSSPSFTHVYSGGRDGNIYRTDLRNPA  288 (735)
T ss_pred             -------------------EeccCc-eEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence                               335553 9999999999999999999999999999853

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.90  E-value=6.4e-22  Score=186.79  Aligned_cols=209  Identities=18%  Similarity=0.270  Sum_probs=150.8

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC------------eEEEEEccCCCCceEEEEEe-------eCCCCcEEEE
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSR------------KLLHSIETGHSANVFCTKFV-------PETSDELVVS  112 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~------------~~~~~~~~~h~~~V~~v~~~-------p~~~~~~l~s  112 (763)
                      -...+.|+|||.-|++-+.|..+.+|++...            +....+.......|...+|.       |+  ..++++
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~--t~l~a~  128 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS--TNLFAV  128 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc--cceeee
Confidence            3557899999999999999999999998521            01111111234678888887       44  579999


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC---ceeEEEEecCCCCEEEEEeCCCcEEEEEC-CCCCCCCCCCC
Q 004290          113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASEDGTLRQHDF-RQGSSCPPAGS  188 (763)
Q Consensus       113 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~sp~~~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~  188 (763)
                      .+.+.-|++||.-+++.++        ....-.|.+   ...+++|+|++ ..|+ ++....|++||+ |.+..+.....
T Consensus       129 ssr~~PIh~wdaftG~lra--------Sy~~ydh~de~taAhsL~Fs~DG-eqlf-aGykrcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  129 SSRDQPIHLWDAFTGKLRA--------SYRAYDHQDEYTAAHSLQFSPDG-EQLF-AGYKRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             ccccCceeeeecccccccc--------chhhhhhHHhhhhheeEEecCCC-CeEe-ecccceEEEeeccCCCCCCcchhh
Confidence            9999999999999866433        111222433   35689999955 5553 567799999999 55543311100


Q ss_pred             CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccc
Q 004290          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  268 (763)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  268 (763)
                      .                  .....+..+-+.+++|+|.+...+++|+.-..+-||.-..+.++..+              
T Consensus       199 ~------------------~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll--------------  246 (406)
T KOG2919|consen  199 V------------------TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL--------------  246 (406)
T ss_pred             h------------------hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee--------------
Confidence            0                  01122445678899999998889999999999999887776554333              


Q ss_pred             cccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCC
Q 004290          269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA  311 (763)
Q Consensus       269 ~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~  311 (763)
                            .||.+ .||.++|+++|+.|++|.. |..|.+||++..
T Consensus       247 ------ggh~g-GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  247 ------GGHGG-GVTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             ------cccCC-CeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence                  45666 5999999999999999998 889999999884

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=3.7e-21  Score=200.17  Aligned_cols=186  Identities=12%  Similarity=0.186  Sum_probs=131.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEE-EEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (763)
Q Consensus        62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (763)
                      +.+++|++.|+.|++||+.+++.+..+ ..+. .+.+++|+|+  +..+ ++++.++.|++||..++.          ..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~~~-~~~~l~~~~d--g~~l~~~~~~~~~v~~~d~~~~~----------~~   66 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTF-PVGQ-RPRGITLSKD--GKLLYVCASDSDTIQVIDLATGE----------VI   66 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEE-ECCC-CCCceEECCC--CCEEEEEECCCCeEEEEECCCCc----------EE
Confidence            457889999999999999999988888 4443 4678999999  5655 677789999999998632          23


Q ss_pred             eeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEE
Q 004290          141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS  220 (763)
Q Consensus       141 ~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (763)
                      ..+..+. .+..++|+|++..++++++.++.|++||+++.+..              ..+           + ....+.+
T Consensus        67 ~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~--------------~~~-----------~-~~~~~~~  119 (300)
T TIGR03866        67 GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVL--------------AEI-----------P-VGVEPEG  119 (300)
T ss_pred             EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE--------------eEe-----------e-CCCCcce
Confidence            3344333 35678999955445556667899999999875421              000           0 1123567


Q ss_pred             EEEeCCCCcEEEEEeCCC-cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-
Q 004290          221 CDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-  298 (763)
Q Consensus       221 i~~~p~~~~~l~sgs~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-  298 (763)
                      ++|+|+ +.++++++.++ .+.+||.+++.......                   .+.   .+..++|+|+|++|++++ 
T Consensus       120 ~~~~~d-g~~l~~~~~~~~~~~~~d~~~~~~~~~~~-------------------~~~---~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866       120 MAVSPD-GKIVVNTSETTNMAHFIDTKTYEIVDNVL-------------------VDQ---RPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             EEECCC-CCEEEEEecCCCeEEEEeCCCCeEEEEEE-------------------cCC---CccEEEECCCCCEEEEEcC
Confidence            999997 67888887765 57788987654321110                   001   256789999999886665 


Q ss_pred             CCCeEEEEECCCC
Q 004290          299 SGEHVYLMDVNHA  311 (763)
Q Consensus       299 ~d~~i~iwd~~~~  311 (763)
                      .++.|++||+.++
T Consensus       177 ~~~~v~i~d~~~~  189 (300)
T TIGR03866       177 IGGTVSVIDVATR  189 (300)
T ss_pred             CCCEEEEEEcCcc
Confidence            5999999999885

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.90  E-value=3.4e-21  Score=196.40  Aligned_cols=217  Identities=18%  Similarity=0.244  Sum_probs=152.2

Q ss_pred             ccccceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEE-----EEccCCCCceEEEEEeeCCCCcEEEE
Q 004290           39 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLH-----SIETGHSANVFCTKFVPETSDELVVS  112 (763)
Q Consensus        39 ~~~~~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~-----~~~~~h~~~V~~v~~~p~~~~~~l~s  112 (763)
                      +-+.+..|.+|.+.|+.+.|+| +..+||+||.|..|+||.+..|-...     ....+..-.|.++.|+|.. +.+|++
T Consensus        68 ~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTa-Dgil~s  146 (1012)
T KOG1445|consen   68 RTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTA-DGILAS  146 (1012)
T ss_pred             cccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCc-CceEEe
Confidence            3456778899999999999999 56789999999999999998543211     1213344578999999986 556666


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004290          113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  192 (763)
Q Consensus       113 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  192 (763)
                      ++ -|.++|||+.+.          +.+..+.+|.+.|.++.|+. ++.++++++.|+.|+|||-|..-...+...+|..
T Consensus       147 ~a-~g~v~i~D~stq----------k~~~el~~h~d~vQSa~Wse-DG~llatscKdkqirifDPRa~~~piQ~te~H~~  214 (1012)
T KOG1445|consen  147 GA-HGSVYITDISTQ----------KTAVELSGHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGG  214 (1012)
T ss_pred             cc-CceEEEEEcccC----------ceeecccCCchhhhcccccc-CCceEeeecCCcceEEeCCccCCCcccccccccc
Confidence            55 699999999973          44778899999999999998 7799999999999999999987544333232222


Q ss_pred             cceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC----CcEEEEeCCCCCC-CcccCCCCCCCCccccc
Q 004290          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPP-LTSCQKRMSPPPCVNYF  267 (763)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D----g~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~  267 (763)
                      .                       .=..+.|.-+ -..|++.+.+    ..|++||.+.... +.++..           
T Consensus       215 ~-----------------------rdsRv~w~Gn-~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tlel-----------  259 (1012)
T KOG1445|consen  215 M-----------------------RDSRVLWAGN-WERLISTGFTTKRIREVRAYDTRKFGAPVHTLEL-----------  259 (1012)
T ss_pred             c-----------------------hhheeeeccc-hhhhhhcccchhhheeeeeeeccccCCcceeEEe-----------
Confidence            1                       1112344443 2345554443    5689999986431 111110           


Q ss_pred             ccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCC
Q 004290          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG  312 (763)
Q Consensus       268 ~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~  312 (763)
                               .....|.---|.||.++|+.++. +.+++++.+....
T Consensus       260 ---------d~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~q  296 (1012)
T KOG1445|consen  260 ---------DSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQ  296 (1012)
T ss_pred             ---------ecccceEeeeecCCCceEEEecCCcceEEEEEecCCC
Confidence                     11112555568999988887775 8899999998743

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=2.1e-22  Score=200.07  Aligned_cols=212  Identities=19%  Similarity=0.293  Sum_probs=166.4

Q ss_pred             hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEc-cCCCCceEEEEEeeCCCCcEEEEE
Q 004290           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIE-TGHSANVFCTKFVPETSDELVVSG  113 (763)
Q Consensus        38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~---~~~~~~-~~h~~~V~~v~~~p~~~~~~l~s~  113 (763)
                      +..+.+++|. |..-|.++.+|...+++.||+. |.|+|||+....   .+..+. ......|.++..+|+  ++.|++|
T Consensus       408 rharq~~tL~-HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd--grtLivG  483 (705)
T KOG0639|consen  408 RHARQINTLA-HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD--GRTLIVG  483 (705)
T ss_pred             chHHhhhhhc-cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC--CceEEec
Confidence            4456666664 8888999999999999999987 799999997532   222221 124567899999999  7999999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004290          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (763)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  193 (763)
                      +.-.++.|||+..+..+.        ...+..-.-.++.++.+| +.++.++++.||.|.|||+++..            
T Consensus       484 GeastlsiWDLAapTpri--------kaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~------------  542 (705)
T KOG0639|consen  484 GEASTLSIWDLAAPTPRI--------KAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQT------------  542 (705)
T ss_pred             cccceeeeeeccCCCcch--------hhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccce------------
Confidence            999999999999754322        233333445678899999 66888899999999999999865            


Q ss_pred             ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccccccc
Q 004290          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (763)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (763)
                                   .+..+++|+..+.||.++++ |..|-+|+-|++||.||+|.+..+...                   
T Consensus       543 -------------~VrqfqGhtDGascIdis~d-GtklWTGGlDntvRcWDlregrqlqqh-------------------  589 (705)
T KOG0639|consen  543 -------------LVRQFQGHTDGASCIDISKD-GTKLWTGGLDNTVRCWDLREGRQLQQH-------------------  589 (705)
T ss_pred             -------------eeecccCCCCCceeEEecCC-CceeecCCCccceeehhhhhhhhhhhh-------------------
Confidence                         34556789999999999997 789999999999999999988654322                   


Q ss_pred             CCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       274 ~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                        ...+ .|.++-++|++.+|++|..++.+.+-....
T Consensus       590 --dF~S-QIfSLg~cP~~dWlavGMens~vevlh~sk  623 (705)
T KOG0639|consen  590 --DFSS-QIFSLGYCPTGDWLAVGMENSNVEVLHTSK  623 (705)
T ss_pred             --hhhh-hheecccCCCccceeeecccCcEEEEecCC
Confidence              1222 599999999999999999988877765544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2e-22  Score=210.76  Aligned_cols=207  Identities=16%  Similarity=0.242  Sum_probs=161.6

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEc--cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIE--TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~----~~~~~~~--~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~  124 (763)
                      ...++|+.+++-..++.++.. .++|+.+...    ++...+.  +.-...+..|+|...- .++|++++..|.|.+||+
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~-~NlIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLY-SNLIATCSTNGVISVWDL  117 (839)
T ss_pred             cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccch-hhhheeecCCCcEEEEec
Confidence            345677788888888888764 7888877532    2222220  1111345678898543 789999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                      ......       ..+..|..|...++++.|++..+++|+|||.||+|++||+|..+..                     
T Consensus       118 nk~~rn-------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~---------------------  169 (839)
T KOG0269|consen  118 NKSIRN-------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK---------------------  169 (839)
T ss_pred             Cccccc-------hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc---------------------
Confidence            964221       3467889999999999999999999999999999999999987632                     


Q ss_pred             eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (763)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  284 (763)
                          ..+.+....|..++|+|..+++|+++...|.+++||+|.-.            +|...+       ..|.+ +|.+
T Consensus       170 ----~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~------------r~~~k~-------~AH~G-pV~c  225 (839)
T KOG0269|consen  170 ----STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD------------RCEKKL-------TAHNG-PVLC  225 (839)
T ss_pred             ----ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch------------hHHHHh-------hcccC-ceEE
Confidence                22233567899999999989999999999999999999532            343333       44666 7999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          285 VTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       285 v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +.|+|++.+|++|+.|++|+|||+.+.
T Consensus       226 ~nwhPnr~~lATGGRDK~vkiWd~t~~  252 (839)
T KOG0269|consen  226 LNWHPNREWLATGGRDKMVKIWDMTDS  252 (839)
T ss_pred             EeecCCCceeeecCCCccEEEEeccCC
Confidence            999999999999999999999999874

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.90  E-value=1e-22  Score=203.18  Aligned_cols=265  Identities=15%  Similarity=0.196  Sum_probs=195.2

Q ss_pred             Ccccccccccchh-----hhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE---------
Q 004290           23 RPDVNHSLQMHSS-----LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---------   88 (763)
Q Consensus        23 ~~~~~~~~~~~~~-----~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~---------   88 (763)
                      +++++..+++|+.     .++.++.+.-.+.|  .|++++|++.|..|+..+..-+++|+|-...+.+...         
T Consensus       184 sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h--~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm  261 (641)
T KOG0772|consen  184 SGSLDYTVKFWDFQGMDASMRSFRQLQPCETH--QINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDM  261 (641)
T ss_pred             eccccceEEEEecccccccchhhhccCccccc--ccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhh
Confidence            4678899999983     23334444444444  7999999999998888888889999997644332221         


Q ss_pred             --ccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee-----cccCceeEEEEecCCCC
Q 004290           89 --ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-----CHTRRVKKLAVEVGNPH  161 (763)
Q Consensus        89 --~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~sp~~~~  161 (763)
                        ..||...++|.+|+|.. ...|++++.||+++|||+.....+         +++++     +-.-+++.++|+| ++.
T Consensus       262 ~nTKGHia~lt~g~whP~~-k~~FlT~s~DgtlRiWdv~~~k~q---------~qVik~k~~~g~Rv~~tsC~~nr-dg~  330 (641)
T KOG0772|consen  262 YNTKGHIAELTCGCWHPDN-KEEFLTCSYDGTLRIWDVNNTKSQ---------LQVIKTKPAGGKRVPVTSCAWNR-DGK  330 (641)
T ss_pred             hccCCceeeeeccccccCc-ccceEEecCCCcEEEEecCCchhh---------eeEEeeccCCCcccCceeeecCC-Ccc
Confidence              16899999999999996 789999999999999999975432         22232     3345789999999 668


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCcc--ceEEEEEeCCCCcEEEEEeCCCc
Q 004290          162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL--SLKSCDISSTRPHLLLVGGSDAF  239 (763)
Q Consensus       162 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~~p~~~~~l~sgs~Dg~  239 (763)
                      +|++|+.||.|.+|+.+....-         .             .+.....|..  .|+||.|+++ |++|++-+.|++
T Consensus       331 ~iAagc~DGSIQ~W~~~~~~v~---------p-------------~~~vk~AH~~g~~Itsi~FS~d-g~~LlSRg~D~t  387 (641)
T KOG0772|consen  331 LIAAGCLDGSIQIWDKGSRTVR---------P-------------VMKVKDAHLPGQDITSISFSYD-GNYLLSRGFDDT  387 (641)
T ss_pred             hhhhcccCCceeeeecCCcccc---------c-------------ceEeeeccCCCCceeEEEeccc-cchhhhccCCCc
Confidence            8999999999999998654311         0             1111223444  8999999998 799999999999


Q ss_pred             EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC------CCeEEEEECCCCCc
Q 004290          240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHAGG  313 (763)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~------d~~i~iwd~~~~~~  313 (763)
                      +++||+|..+.            ++..+...      ....+-+.++|||+.+.|++|+.      -+.+++||..+...
T Consensus       388 LKvWDLrq~kk------------pL~~~tgL------~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~  449 (641)
T KOG0772|consen  388 LKVWDLRQFKK------------PLNVRTGL------PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT  449 (641)
T ss_pred             eeeeecccccc------------chhhhcCC------CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence            99999997652            22221110      11124688999999999999875      46899999999777


Q ss_pred             cceEeecCCCCeeeeeccCCCCcccCCC
Q 004290          314 RAMRYTVGDASKIMSFTPTLNGLELQPP  341 (763)
Q Consensus       314 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~  341 (763)
                      .+.+...+..+-...|+|..+.+-....
T Consensus       450 v~ki~i~~aSvv~~~WhpkLNQi~~gsg  477 (641)
T KOG0772|consen  450 VYKIDISTASVVRCLWHPKLNQIFAGSG  477 (641)
T ss_pred             EEEecCCCceEEEEeecchhhheeeecC
Confidence            7777666777777889998877755443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=3.5e-21  Score=191.91  Aligned_cols=234  Identities=16%  Similarity=0.236  Sum_probs=175.0

Q ss_pred             eeeccc-cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004290           44 RELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (763)
Q Consensus        44 ~~l~gH-~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw  122 (763)
                      ..++++ +..|.|++|.++|. +++|..+|.|.||+..+.+..+.. ..|.+.|.+++...+  | .|+||+.|+.|..|
T Consensus       239 ~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~-~aH~ggv~~L~~lr~--G-tllSGgKDRki~~W  313 (626)
T KOG2106|consen  239 GIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQV-HAHDGGVFSLCMLRD--G-TLLSGGKDRKIILW  313 (626)
T ss_pred             eccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEe-eecCCceEEEEEecC--c-cEeecCccceEEec
Confidence            345554 36799999999998 679999999999999888888877 499999999999988  4 56669999999999


Q ss_pred             ECCCCCCCCCCC------------------------------CCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcE
Q 004290          123 NLSRFSGRGLDD------------------------------NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL  172 (763)
Q Consensus       123 d~~~~~~~~~~~------------------------------~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i  172 (763)
                      |-.-.+.+..+.                              ..........+|.+....++.+| +..+++|++.|+.+
T Consensus       314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v  392 (626)
T KOG2106|consen  314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHV  392 (626)
T ss_pred             cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceE
Confidence            944322211100                              00011223456888999999999 55788899999999


Q ss_pred             EEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCc
Q 004290          173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT  252 (763)
Q Consensus       173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~  252 (763)
                      ++|+  ..+              ..|..            .-..++.|+.|+|. + .+|+|+..|...+.|..+...+.
T Consensus       393 ~lW~--~~k--------------~~wt~------------~~~d~~~~~~fhps-g-~va~Gt~~G~w~V~d~e~~~lv~  442 (626)
T KOG2106|consen  393 RLWN--DHK--------------LEWTK------------IIEDPAECADFHPS-G-VVAVGTATGRWFVLDTETQDLVT  442 (626)
T ss_pred             EEcc--CCc--------------eeEEE------------EecCceeEeeccCc-c-eEEEeeccceEEEEecccceeEE
Confidence            9999  222              12211            11356789999997 4 99999999999999999854332


Q ss_pred             ccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEee--cCCCCeeeeec
Q 004290          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT--VGDASKIMSFT  330 (763)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~  330 (763)
                      ..                     -. +.+++.|+|+|+|.+|+.|+.|+.|+||.+...+......+  ++.++..+.|+
T Consensus       443 ~~---------------------~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS  500 (626)
T KOG2106|consen  443 IH---------------------TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS  500 (626)
T ss_pred             EE---------------------ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence            11                     11 33699999999999999999999999999988765554433  45777778888


Q ss_pred             cCCCC
Q 004290          331 PTLNG  335 (763)
Q Consensus       331 p~~~~  335 (763)
                      ++++-
T Consensus       501 ~Ds~~  505 (626)
T KOG2106|consen  501 SDSQF  505 (626)
T ss_pred             CCCce
Confidence            87543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=7.7e-21  Score=170.43  Aligned_cols=209  Identities=23%  Similarity=0.338  Sum_probs=162.8

Q ss_pred             ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEE-----EEEccCCCCceEEEEEeeC--CCCcEEEEEeC-CCc
Q 004290           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-----HSIETGHSANVFCTKFVPE--TSDELVVSGAG-DAE  118 (763)
Q Consensus        47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~-----~~~~~~h~~~V~~v~~~p~--~~~~~l~s~s~-dg~  118 (763)
                      +-|.+.|.|.+|+|+|++||+|+.|++|++.-+....+.     ..+ .-|.+.|..++|..+  +.+.+|++++. |..
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            468999999999999999999999999999876543321     234 569999999999754  33667887654 666


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeecccCceeEE-EEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL-AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  197 (763)
                      |++-|..++          ...+.+.+|.+.|..+ .|   ++.+|++|+.|.+|++||++-+...           +.+
T Consensus       165 iy~tdc~~g----------~~~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v-----------~~l  220 (350)
T KOG0641|consen  165 IYITDCGRG----------QGFHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCV-----------NTL  220 (350)
T ss_pred             EEEeecCCC----------CcceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeecccee-----------eec
Confidence            777777663          3478899999999887 44   5689999999999999999987532           111


Q ss_pred             E-ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290          198 L-DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (763)
Q Consensus       198 ~-~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (763)
                      - +.+.+        .-....|.+++..|. |.+|++|-.|....+||+|.+..+..+                    +.
T Consensus       221 ~~~~~~~--------glessavaav~vdps-grll~sg~~dssc~lydirg~r~iq~f--------------------~p  271 (350)
T KOG0641|consen  221 DNDFHDG--------GLESSAVAAVAVDPS-GRLLASGHADSSCMLYDIRGGRMIQRF--------------------HP  271 (350)
T ss_pred             cCcccCC--------CcccceeEEEEECCC-cceeeeccCCCceEEEEeeCCceeeee--------------------CC
Confidence            1 01111        112357899999997 799999999999999999988665443                    33


Q ss_pred             CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      |.. .|.+|.|+|.-.|+++++.|..|++-|+..
T Consensus       272 hsa-dir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  272 HSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             Ccc-ceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            555 599999999999999999999999999876

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=2.2e-21  Score=191.45  Aligned_cols=218  Identities=17%  Similarity=0.266  Sum_probs=166.2

Q ss_pred             cccceeeccccCceEEEEeCCCC--CEEEEEeCCCcEEEEeCCCC----eEEEEEccCCCCceEEEEEeeCCCCcEEEEE
Q 004290           40 LSQERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSG  113 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g--~~Lasgs~D~~v~iWd~~~~----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~  113 (763)
                      +....+.+-|.+.|++++|+|..  +++|+|..-|+|-+||+.+.    ..+..+ ..|..+|.++.|+|.+ ...+++.
T Consensus       176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n-~s~i~ss  253 (498)
T KOG4328|consen  176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPAN-TSQIYSS  253 (498)
T ss_pred             ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCC-hhheeee
Confidence            34456667789999999999965  58889999999999999532    234455 7899999999999986 7899999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004290          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (763)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  193 (763)
                      |.||+|++-|++....        +.+..+......+.++.|+..++..+ .+..=|...+||+|++...          
T Consensus       254 SyDGtiR~~D~~~~i~--------e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~----------  314 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNIS--------EEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSE----------  314 (498)
T ss_pred             ccCceeeeeeecchhh--------HHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCcc----------
Confidence            9999999999996432        22333333455677788888555444 5555569999999998632          


Q ss_pred             ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccccccc
Q 004290          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (763)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (763)
                                    ......|...|++++++|..+.+||+++.|++++|||+|......+               | .+.
T Consensus       315 --------------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s---------------p-~ls  364 (498)
T KOG4328|consen  315 --------------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS---------------P-FLS  364 (498)
T ss_pred             --------------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC---------------c-cee
Confidence                          1112235558999999999999999999999999999997654321               0 111


Q ss_pred             CCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004290          274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (763)
Q Consensus       274 ~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~  309 (763)
                      ...|.. .|.++.|||.+-.|++.+.|..|+|||..
T Consensus       365 t~~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  365 TLPHRR-SVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             cccccc-eeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            123544 59999999998889999999999999875

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=1.7e-21  Score=199.49  Aligned_cols=267  Identities=18%  Similarity=0.266  Sum_probs=179.3

Q ss_pred             CchhhhhhccccCCCcccccccccchhhhhccc----cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004290            9 GSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLS----QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL   84 (763)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~   84 (763)
                      +.++.-+..+++......++.+.+++.-...++    .++....|...|..+.|-|....|++++.|.++++||+++.++
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            455555666666555555666666664333333    2356678999999999999777899999999999999999988


Q ss_pred             EEE--EccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC------------C---C--CCCCCceeeec
Q 004290           85 LHS--IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL------------D---D--NAITPSALYQC  145 (763)
Q Consensus        85 ~~~--~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~------------~---~--~~~~~~~~~~~  145 (763)
                      +..  + .||.+.|.+++|.|.. ...|++|+.||.|.|||++.......            .   .  ...+-+...+.
T Consensus       135 ~G~~~~-~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  135 VGGRLN-LGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             ecceee-cccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence            776  5 7999999999999985 78999999999999999985321000            0   0  00011222334


Q ss_pred             ccCceeE---EEEecCCCCEEEEEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEE
Q 004290          146 HTRRVKK---LAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  221 (763)
Q Consensus       146 h~~~v~~---l~~sp~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  221 (763)
                      +...|.+   +.+.. +...|++++. |+.|++||+++..........              ....+.........+.++
T Consensus       213 ~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~--------------~~~~~~t~skrs~G~~nL  277 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPR--------------GSDKYPTHSKRSVGQVNL  277 (720)
T ss_pred             ccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCC--------------cccCccCcccceeeeEEE
Confidence            4444444   44444 5578888887 999999999998643111100              001111112234567888


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc-ceeEEEEcCCCCEEEEEeCC
Q 004290          222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL-HLTHVTFSPNGEEVLLSYSG  300 (763)
Q Consensus       222 ~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~v~~spdg~~l~~~s~d  300 (763)
                      ..+.. |.+|++.+.|+.|.+|+++....--           +..|       .|+... .-..-..+|++.+|++|+.|
T Consensus       278 ~lDss-Gt~L~AsCtD~sIy~ynm~s~s~sP-----------~~~~-------sg~~~~sf~vks~lSpd~~~l~SgSsd  338 (720)
T KOG0321|consen  278 ILDSS-GTYLFASCTDNSIYFYNMRSLSISP-----------VAEF-------SGKLNSSFYVKSELSPDDCSLLSGSSD  338 (720)
T ss_pred             EecCC-CCeEEEEecCCcEEEEeccccCcCc-----------hhhc-------cCcccceeeeeeecCCCCceEeccCCC
Confidence            88886 5677777789999999999754211           1111       111110 11223468999999999999


Q ss_pred             CeEEEEECCCC
Q 004290          301 EHVYLMDVNHA  311 (763)
Q Consensus       301 ~~i~iwd~~~~  311 (763)
                      ...++|.+.+.
T Consensus       339 ~~ayiw~vs~~  349 (720)
T KOG0321|consen  339 EQAYIWVVSSP  349 (720)
T ss_pred             cceeeeeecCc
Confidence            99999998884

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=2.9e-21  Score=181.01  Aligned_cols=161  Identities=18%  Similarity=0.296  Sum_probs=124.3

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      ..-...|.+++|+|.. ..+++.+|.|++||+|+++.. +..      .+ +....|.++|.+++|+. ++..+++|+.|
T Consensus        24 ~pP~DsIS~l~FSP~~-~~~~~A~SWD~tVR~wevq~~-g~~------~~-ka~~~~~~PvL~v~Wsd-dgskVf~g~~D   93 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQA-DNLLAAGSWDGTVRIWEVQNS-GQL------VP-KAQQSHDGPVLDVCWSD-DGSKVFSGGCD   93 (347)
T ss_pred             CCcccchheeEecccc-CceEEecccCCceEEEEEecC-Ccc------cc-hhhhccCCCeEEEEEcc-CCceEEeeccC
Confidence            4567889999999953 678889999999999999963 221      22 44567999999999998 66888899999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCc--EEEEEeCCCcEEEEeCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH--LLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~--~l~sgs~Dg~i~iwd~~~  247 (763)
                      +.+++||+.+++..                          ....|..+|.++.|-+. ..  +|++||.|.+|+.||+|.
T Consensus        94 k~~k~wDL~S~Q~~--------------------------~v~~Hd~pvkt~~wv~~-~~~~cl~TGSWDKTlKfWD~R~  146 (347)
T KOG0647|consen   94 KQAKLWDLASGQVS--------------------------QVAAHDAPVKTCHWVPG-MNYQCLVTGSWDKTLKFWDTRS  146 (347)
T ss_pred             CceEEEEccCCCee--------------------------eeeecccceeEEEEecC-CCcceeEecccccceeecccCC
Confidence            99999999998632                          11247788999999874 34  899999999999999998


Q ss_pred             CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ..++.++..+                +      .+.++..  -..+++++..+..|.+|++.++
T Consensus       147 ~~pv~t~~LP----------------e------RvYa~Dv--~~pm~vVata~r~i~vynL~n~  186 (347)
T KOG0647|consen  147 SNPVATLQLP----------------E------RVYAADV--LYPMAVVATAERHIAVYNLENP  186 (347)
T ss_pred             CCeeeeeecc----------------c------eeeehhc--cCceeEEEecCCcEEEEEcCCC
Confidence            7665544211                1      2333322  3467899999999999999874

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=6.4e-22  Score=196.02  Aligned_cols=197  Identities=15%  Similarity=0.131  Sum_probs=154.8

Q ss_pred             CCEEEEEeC-CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290           62 GSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (763)
Q Consensus        62 g~~Lasgs~-D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (763)
                      +++++++.. -..|.+|.+......... .--.++|.+++-+|.  |.+|+.|...|.|++|.+.++          ..+
T Consensus        50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~-~v~Pg~v~al~s~n~--G~~l~ag~i~g~lYlWelssG----------~LL  116 (476)
T KOG0646|consen   50 NEYLLSAQLKRPLLHVWEILKKDQVVQY-IVLPGPVHALASSNL--GYFLLAGTISGNLYLWELSSG----------ILL  116 (476)
T ss_pred             hhheeeecccCccccccccCchhhhhhh-cccccceeeeecCCC--ceEEEeecccCcEEEEEeccc----------cHH
Confidence            356666643 457889998765544322 235678999999999  788888889999999999984          447


Q ss_pred             eeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEE
Q 004290          141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS  220 (763)
Q Consensus       141 ~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (763)
                      ..+.+|-..|+|+.|+- ++.+|+|||.||.|.+|++..--.                .........+..+..|+.+|++
T Consensus       117 ~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~----------------a~~~~~~~p~~~f~~HtlsITD  179 (476)
T KOG0646|consen  117 NVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVS----------------ADNDHSVKPLHIFSDHTLSITD  179 (476)
T ss_pred             HHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecc----------------cccCCCccceeeeccCcceeEE
Confidence            78899999999999997 678999999999999998764321                1111234456667789999999


Q ss_pred             EEEeCCC-CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 004290          221 CDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  299 (763)
Q Consensus       221 i~~~p~~-~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~  299 (763)
                      +...+.+ ..+++++|.|.++++||+..+..+.++..+                      ..+++++.+|-++.+++|+.
T Consensus       180 l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp----------------------~si~av~lDpae~~~yiGt~  237 (476)
T KOG0646|consen  180 LQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP----------------------SSIKAVALDPAERVVYIGTE  237 (476)
T ss_pred             EEecCCCccceEEEecCCceEEEEEeccceeeEEEecC----------------------CcceeEEEcccccEEEecCC
Confidence            9887641 358999999999999999998766554211                      15999999999999999999


Q ss_pred             CCeEEEEECCC
Q 004290          300 GEHVYLMDVNH  310 (763)
Q Consensus       300 d~~i~iwd~~~  310 (763)
                      +|.|.+.++..
T Consensus       238 ~G~I~~~~~~~  248 (476)
T KOG0646|consen  238 EGKIFQNLLFK  248 (476)
T ss_pred             cceEEeeehhc
Confidence            99999998877

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.88  E-value=2e-21  Score=211.80  Aligned_cols=236  Identities=20%  Similarity=0.321  Sum_probs=181.3

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC------------------CeEEEEEccCCCCceEEEEEe
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFV  102 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~------------------~~~~~~~~~~h~~~V~~v~~~  102 (763)
                      +.+-.+..|.++|+|+.|+|||++||+||+|+.|.||+...                  .+++..+ .+|...|..++|+
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDVLDVNWS  138 (942)
T ss_pred             hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCccceeccC
Confidence            45566778999999999999999999999999999999872                  1245555 7999999999999


Q ss_pred             eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      |+  +.+|++++.|++|.|||..+.          +.+..+.+|.+.|..+.|.| -+++|+|-+.|++|++|.+.+...
T Consensus       139 p~--~~~lvS~s~DnsViiwn~~tF----------~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i  205 (942)
T KOG0973|consen  139 PD--DSLLVSVSLDNSVIIWNAKTF----------ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGI  205 (942)
T ss_pred             CC--ccEEEEecccceEEEEccccc----------eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEccccee
Confidence            98  799999999999999999983          45889999999999999999 669999999999999999766432


Q ss_pred             CCCCCCCCc---------------------------ccceEEEecCCCceeeccCCCCCccceEEEEEeCC----C----
Q 004290          183 CPPAGSSHQ---------------------------ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST----R----  227 (763)
Q Consensus       183 ~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~----~----  227 (763)
                      ...+...-.                           .....+.-+..+....-..+-+|..++.++.|+|.    .    
T Consensus       206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng  285 (942)
T KOG0973|consen  206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNG  285 (942)
T ss_pred             eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccC
Confidence            211000000                           00011111111222233445688899999999983    1    


Q ss_pred             ----Cc----EEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 004290          228 ----PH----LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  299 (763)
Q Consensus       228 ----~~----~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~  299 (763)
                          ++    .+|+|+.|++|-||.....+++..+                    +.-.+..|..++|+|||..|+++|.
T Consensus       286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi--------------------~~lf~~SI~DmsWspdG~~LfacS~  345 (942)
T KOG0973|consen  286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI--------------------HNLFNKSIVDMSWSPDGFSLFACSL  345 (942)
T ss_pred             CccCCCcceEEEEEecCCccEEEEecCCCCchhhh--------------------hhhhcCceeeeeEcCCCCeEEEEec
Confidence                22    7899999999999998766554332                    1112225999999999999999999


Q ss_pred             CCeEEEEECCC
Q 004290          300 GEHVYLMDVNH  310 (763)
Q Consensus       300 d~~i~iwd~~~  310 (763)
                      ||+|.++....
T Consensus       346 DGtV~~i~Fee  356 (942)
T KOG0973|consen  346 DGTVALIHFEE  356 (942)
T ss_pred             CCeEEEEEcch
Confidence            99999999877

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2e-22  Score=210.71  Aligned_cols=223  Identities=16%  Similarity=0.275  Sum_probs=177.5

Q ss_pred             ceEEEEeCC-CCCEEEEEeCCCcEEEEeCCC---CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004290           52 CVNAISWNS-KGSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (763)
Q Consensus        52 ~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~---~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~  127 (763)
                      .+..|+|+. +.++||+++..|.|.+||+..   .+.+..| ..|+..++++.|++.. ..+|++|+.||+|++||++..
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f-~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF-NEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh-hhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecc
Confidence            456678875 568999999999999999987   4455556 7999999999999986 789999999999999999974


Q ss_pred             CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (763)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (763)
                      +          ...++.+....|+.|.|+|..+..|+++...|.+++||+|....+                        
T Consensus       167 ~----------S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------------------------  212 (839)
T KOG0269|consen  167 K----------SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------------------------  212 (839)
T ss_pred             c----------ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH------------------------
Confidence            3          256677788999999999988999999999999999999998643                        


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (763)
Q Consensus       208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~  287 (763)
                      ...+..|.++|.|+.|+|+ ..+||+|+.|+.|+|||+.+.......        ++            +...+|..|+|
T Consensus       213 ~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~~~--------tI------------nTiapv~rVkW  271 (839)
T KOG0269|consen  213 EKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKPKH--------TI------------NTIAPVGRVKW  271 (839)
T ss_pred             HHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCCCcccee--------EE------------eecceeeeeee
Confidence            3334568999999999995 789999999999999999865422110        11            22336999999


Q ss_pred             cCCCCEEEEE-eC--CCeEEEEECCCCCccceEee-cCCCCeeeeecc
Q 004290          288 SPNGEEVLLS-YS--GEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTP  331 (763)
Q Consensus       288 spdg~~l~~~-s~--d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~p  331 (763)
                      -|..++.++. +.  |-.|++||++.+..+...+. +......++|..
T Consensus       272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence            9987765544 43  88999999999765554443 455666666654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=1.3e-21  Score=188.42  Aligned_cols=217  Identities=20%  Similarity=0.280  Sum_probs=169.7

Q ss_pred             eeeccccCceEEEEeCCC--CCEEEEEeCCCcEEEEeCCC----------------CeEEEEEccCCCCceEEEEEeeCC
Q 004290           44 RELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSS----------------RKLLHSIETGHSANVFCTKFVPET  105 (763)
Q Consensus        44 ~~l~gH~~~V~~l~fsp~--g~~Lasgs~D~~v~iWd~~~----------------~~~~~~~~~~h~~~V~~v~~~p~~  105 (763)
                      ...-+|.+.|+-+.-++-  ..+.|+-+..|.|+|||+..                .+.+.++ .+|...=+.++|+|-.
T Consensus       145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~  223 (440)
T KOG0302|consen  145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIK  223 (440)
T ss_pred             ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccccc
Confidence            334468899998888874  45778888999999999742                3456777 7899999999999964


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004290          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (763)
Q Consensus       106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~  185 (763)
                       ...|+||..-+.|++|...++....-       ...|.+|...|-.|+|+|....+|+|||.||+|+|||+|.+...  
T Consensus       224 -~g~LlsGDc~~~I~lw~~~~g~W~vd-------~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~--  293 (440)
T KOG0302|consen  224 -TGRLLSGDCVKGIHLWEPSTGSWKVD-------QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK--  293 (440)
T ss_pred             -ccccccCccccceEeeeeccCceeec-------CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc--
Confidence             45788998889999999998543321       35567899999999999998899999999999999999998522  


Q ss_pred             CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccc
Q 004290          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (763)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  265 (763)
                                           .......|...|+.|.|+...+ +||+|+.||+++|||+|..+.-          ..+.
T Consensus       294 ---------------------~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~----------~pVA  341 (440)
T KOG0302|consen  294 ---------------------AAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG----------QPVA  341 (440)
T ss_pred             ---------------------ceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC----------Ccce
Confidence                                 1111145778999999999755 9999999999999999975422          1222


Q ss_pred             ccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 004290          266 YFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       266 ~~~~~~~~~~g~~~~~i~~v~~spd-g~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .|       .-|.. +|++|.|+|. ...|++++.|..|.|||+.-.
T Consensus       342 ~f-------k~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  342 TF-------KYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             eE-------EeccC-CeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            22       22444 7999999995 456777888999999999763

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.88  E-value=4.9e-21  Score=198.16  Aligned_cols=163  Identities=15%  Similarity=0.185  Sum_probs=128.6

Q ss_pred             eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeE-EEEecCCCC
Q 004290           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK-LAVEVGNPH  161 (763)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~sp~~~~  161 (763)
                      +..+.+ .+|...|..+++.+.   ..++++|.||++++|+-....        +.....+.+|.+.|.. +++-+.++.
T Consensus         5 ~ls~~l-~gH~~DVr~v~~~~~---~~i~s~sRd~t~~vw~~~~~~--------~l~~~~~~~~~g~i~~~i~y~e~~~~   72 (745)
T KOG0301|consen    5 KLSHEL-EGHKSDVRAVAVTDG---VCIISGSRDGTVKVWAKKGKQ--------YLETHAFEGPKGFIANSICYAESDKG   72 (745)
T ss_pred             eeEEEe-ccCccchheeEecCC---eEEeecCCCCceeeeeccCcc--------cccceecccCcceeeccceeccccCc
Confidence            344556 799999999998876   689999999999999987532        2234567788888887 888765556


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEE
Q 004290          162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  241 (763)
Q Consensus       162 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~  241 (763)
                      .+++|+.|.+|.+|.+.+..+                         +....+|...|.+++...+ + .+++||.|.+++
T Consensus        73 ~l~~g~~D~~i~v~~~~~~~P-------------------------~~~LkgH~snVC~ls~~~~-~-~~iSgSWD~Tak  125 (745)
T KOG0301|consen   73 RLVVGGMDTTIIVFKLSQAEP-------------------------LYTLKGHKSNVCSLSIGED-G-TLISGSWDSTAK  125 (745)
T ss_pred             ceEeecccceEEEEecCCCCc-------------------------hhhhhccccceeeeecCCc-C-ceEecccccceE
Confidence            788999999999999887653                         4455678889999987775 3 499999999999


Q ss_pred             EEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004290          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (763)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~  308 (763)
                      +|-.....               ..       ..||.. .|++|++-|++ .+++|+.|.+|++|.-
T Consensus       126 vW~~~~l~---------------~~-------l~gH~a-sVWAv~~l~e~-~~vTgsaDKtIklWk~  168 (745)
T KOG0301|consen  126 VWRIGELV---------------YS-------LQGHTA-SVWAVASLPEN-TYVTGSADKTIKLWKG  168 (745)
T ss_pred             Eecchhhh---------------cc-------cCCcch-heeeeeecCCC-cEEeccCcceeeeccC
Confidence            99765321               11       156776 59999999998 6899999999999954

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=1.2e-22  Score=210.60  Aligned_cols=185  Identities=19%  Similarity=0.341  Sum_probs=150.0

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCC
Q 004290           60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP  139 (763)
Q Consensus        60 p~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~  139 (763)
                      |-+.+++....+..+++||.+.      + ..|...|.++..-..  ++.+++|+.|..+-+|.+...          .+
T Consensus         2 ~~~~~~m~~~~~t~Lr~~~~~~------~-~~hsaav~~lk~~~s--~r~~~~Gg~~~k~~L~~i~kp----------~~   62 (825)
T KOG0267|consen    2 PGMEFLMKTKRATKLRVWDTRE------F-VAHSAAVGCLKIRKS--SRSLVTGGEDEKVNLWAIGKP----------NA   62 (825)
T ss_pred             Ccccccceeeeeeccccccchh------h-hhhhhhhceeeeecc--ceeeccCCCceeeccccccCC----------ch
Confidence            3445566666677788898653      2 468888888888444  789999999999999999863          33


Q ss_pred             ceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceE
Q 004290          140 SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK  219 (763)
Q Consensus       140 ~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (763)
                      +..+.+|..+|.+|.|++ ...+|++|+.+|+|++||+...+                         .+....+|...+.
T Consensus        63 i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk-------------------------~vrtLtgh~~~~~  116 (825)
T KOG0267|consen   63 ITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAK-------------------------IVRTLTGHLLNIT  116 (825)
T ss_pred             hheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhh-------------------------hhhhhhccccCcc
Confidence            667899999999999999 66899999999999999999765                         2334456788899


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 004290          220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  299 (763)
Q Consensus       220 ~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~  299 (763)
                      ++.|+|. +.+++.|+.|+.+++||.+...             |..++       .+|.. .|..+.|+|+|++++.++.
T Consensus       117 sv~f~P~-~~~~a~gStdtd~~iwD~Rk~G-------------c~~~~-------~s~~~-vv~~l~lsP~Gr~v~~g~e  174 (825)
T KOG0267|consen  117 SVDFHPY-GEFFASGSTDTDLKIWDIRKKG-------------CSHTY-------KSHTR-VVDVLRLSPDGRWVASGGE  174 (825)
T ss_pred             eeeeccc-eEEeccccccccceehhhhccC-------------ceeee-------cCCcc-eeEEEeecCCCceeeccCC
Confidence            9999997 7899999999999999999543             34333       34444 4899999999999999999


Q ss_pred             CCeEEEEECCCC
Q 004290          300 GEHVYLMDVNHA  311 (763)
Q Consensus       300 d~~i~iwd~~~~  311 (763)
                      |..++|||+..+
T Consensus       175 d~tvki~d~~ag  186 (825)
T KOG0267|consen  175 DNTVKIWDLTAG  186 (825)
T ss_pred             cceeeeeccccc
Confidence            999999998774

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.3e-20  Score=199.29  Aligned_cols=207  Identities=14%  Similarity=0.164  Sum_probs=164.3

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~  126 (763)
                      +|+.+-+.|+|.|+|++|++++.||.|++|+.... +....+ .-+...|.+++..    ..+|++|+.+++|.+|.+..
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~~----s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIACY----SNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEeec----ccceEEeeccceEEEeeCCC
Confidence            68999999999999999999999999999998765 444444 2367778877765    45899999999999999987


Q ss_pred             CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (763)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (763)
                      +..          -..+....-++++++|+- ++.+++.||.|-.|++-++.....                        
T Consensus        86 ~~~----------~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~------------------------  130 (933)
T KOG1274|consen   86 GEE----------DTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQ------------------------  130 (933)
T ss_pred             CCc----------cceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccch------------------------
Confidence            543          223444567899999998 779999999999999999887652                        


Q ss_pred             eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC-ccceeEE
Q 004290          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS-SLHLTHV  285 (763)
Q Consensus       207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~i~~v  285 (763)
                       .....+|..+|.++.|+|. +++||+.+-||.|++||+.++....++......              .+.. ...++.+
T Consensus       131 -~~~lrgh~apVl~l~~~p~-~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~--------------n~~~~s~i~~~~  194 (933)
T KOG1274|consen  131 -EKVLRGHDAPVLQLSYDPK-GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD--------------NEFILSRICTRL  194 (933)
T ss_pred             -heeecccCCceeeeeEcCC-CCEEEEEecCceEEEEEcccchhhhhcccCCcc--------------ccccccceeeee
Confidence             2233578899999999997 799999999999999999988655444221110              1111 2258889


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          286 TFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       286 ~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      +|+|+|..|+....|+.|++|+..+
T Consensus       195 aW~Pk~g~la~~~~d~~Vkvy~r~~  219 (933)
T KOG1274|consen  195 AWHPKGGTLAVPPVDNTVKVYSRKG  219 (933)
T ss_pred             eecCCCCeEEeeccCCeEEEEccCC
Confidence            9999999999999999999998877

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.3e-20  Score=186.91  Aligned_cols=245  Identities=20%  Similarity=0.316  Sum_probs=184.5

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      .++|.+++-+|+|.+|+.|...+.|++|.+.+|..+..+ .+|-..|+|+.|+-+  +.+|+||+.||.|.+|.+...-.
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~d--gs~iiTgskDg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDD--GSHIITGSKDGAVLVWLLTDLVS  157 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCC--CcEEEecCCCccEEEEEEEeecc
Confidence            468999999999999999989999999999999999888 899999999999999  89999999999999999864211


Q ss_pred             CCCCCCCCCCceeeecccCceeEEEEecC-CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290          130 RGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (763)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (763)
                      .. ......++..+..|.-+|+++...+. -...++|+|.|.++++||+..+..+              ...        
T Consensus       158 a~-~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL--------------lti--------  214 (476)
T KOG0646|consen  158 AD-NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL--------------LTI--------  214 (476)
T ss_pred             cc-cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee--------------EEE--------
Confidence            11 11134678999999999999998873 1247889999999999999988643              111        


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcc--cCCC-CCCCCcccccccccccCCCCCc-cceeE
Q 004290          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS--CQKR-MSPPPCVNYFCPMHLSEHGRSS-LHLTH  284 (763)
Q Consensus       209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~g~~~-~~i~~  284 (763)
                          .-...+++++.+|. ...+++|+.+|.|.+.++........  .... .......+       ...||.+ ..|+|
T Consensus       215 ----~fp~si~av~lDpa-e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~-------~~~Gh~~~~~ITc  282 (476)
T KOG0646|consen  215 ----TFPSSIKAVALDPA-ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN-------VLVGHENESAITC  282 (476)
T ss_pred             ----ecCCcceeEEEccc-ccEEEecCCcceEEeeehhcCCcccccccccccccccceee-------eeccccCCcceeE
Confidence                01357899999997 68999999999999998876542100  0000 00000011       1134554 46999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004290          285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (763)
Q Consensus       285 v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (763)
                      ++++-||..|++|+.||.|.+||+.+............+++-+.+.|.
T Consensus       283 Lais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  283 LAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             EEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            999999999999999999999999985433333324455555666554

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=3.1e-22  Score=207.62  Aligned_cols=216  Identities=23%  Similarity=0.393  Sum_probs=183.3

Q ss_pred             CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~  102 (763)
                      .++-+.++.+|.  +.+...+..|.+|..+|.+|.|+++..+|+.|+.+|+|++||++..+.++++ .+|...+.++.|+
T Consensus        45 ~Gg~~~k~~L~~--i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~  121 (825)
T KOG0267|consen   45 TGGEDEKVNLWA--IGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFH  121 (825)
T ss_pred             cCCCceeecccc--ccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeec
Confidence            344556666665  6666777789999999999999999999999999999999999999999998 8999999999999


Q ss_pred             eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      |.  +.++++|+.|+.+++||.+.          ..|...+.+|...|..++|+| ++.+++++++|.+++|||+..++.
T Consensus       122 P~--~~~~a~gStdtd~~iwD~Rk----------~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~  188 (825)
T KOG0267|consen  122 PY--GEFFASGSTDTDLKIWDIRK----------KGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKL  188 (825)
T ss_pred             cc--eEEeccccccccceehhhhc----------cCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeeccccccc
Confidence            99  79999999999999999996          245888999999999999999 779999999999999999988863


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (763)
                                               +..+..|...+.++.|+|. ..+++.|+.|+++++||+++.+.+....       
T Consensus       189 -------------------------~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s~~-------  235 (825)
T KOG0267|consen  189 -------------------------SKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISSGK-------  235 (825)
T ss_pred             -------------------------ccccccccccccccccCch-hhhhccCCCCceeeeeccceeEEeeccC-------
Confidence                                     3445567888999999997 5789999999999999999765443221       


Q ss_pred             cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 004290          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE  301 (763)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~  301 (763)
                                   .. ...|.+++|.|+++.+++|....
T Consensus       236 -------------~~-~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  236 -------------PE-TDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             -------------Cc-cCCceeeeecCCceeeecCchhh
Confidence                         11 22599999999999888776543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.5e-20  Score=183.18  Aligned_cols=202  Identities=15%  Similarity=0.196  Sum_probs=158.8

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEccCCCCceEEEEEeeCCCCc-EEEEEeCCCcEEEEECCC
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSR  126 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~--~~~~~~~~~h~~~V~~v~~~p~~~~~-~l~s~s~dg~I~iwd~~~  126 (763)
                      .++|++|.|+|...+|++|+.|++++||.+...  ..++.+ .-...+|.+++|.|+  |. .+++++....++.||+.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecCC--CceEEEecccceEEEEeeccc
Confidence            578999999999999999999999999988643  355555 345789999999999  56 899999999999999987


Q ss_pred             CCCCCCCCCCCCCceeeeccc-CceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004290          127 FSGRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (763)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (763)
                      .+-        ..+....++. ..+.....+| ++++|+..|..|.|.+....+++.+..                    
T Consensus       290 ak~--------~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s--------------------  340 (514)
T KOG2055|consen  290 AKV--------TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITS--------------------  340 (514)
T ss_pred             ccc--------ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhhe--------------------
Confidence            543        2234444443 4567778889 568999999999999999888774410                    


Q ss_pred             eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEE
Q 004290          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (763)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v  285 (763)
                            -...+.|..++|+.+ ++.|++++.+|.|.+||++....+..+..                  .|.  ..-+++
T Consensus       341 ------~KieG~v~~~~fsSd-sk~l~~~~~~GeV~v~nl~~~~~~~rf~D------------------~G~--v~gts~  393 (514)
T KOG2055|consen  341 ------FKIEGVVSDFTFSSD-SKELLASGGTGEVYVWNLRQNSCLHRFVD------------------DGS--VHGTSL  393 (514)
T ss_pred             ------eeeccEEeeEEEecC-CcEEEEEcCCceEEEEecCCcceEEEEee------------------cCc--cceeee
Confidence                  012467899999987 68899999999999999998654433311                  111  135788


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          286 TFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       286 ~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      |.+++|.||++|+..|.|.|||.++
T Consensus       394 ~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  394 CISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             eecCCCceEEeccCcceEEEeccch
Confidence            8999999999999999999999877

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.86  E-value=3.8e-19  Score=185.01  Aligned_cols=228  Identities=12%  Similarity=0.162  Sum_probs=152.7

Q ss_pred             cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~  102 (763)
                      ...+..+.+|+  ..+.+.+..+.+|.. +.+++|+|+|+.| ++++.++.|++||..+++.+..+ ..+. .+..+.|+
T Consensus         7 ~~~d~~v~~~d--~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-~~~~-~~~~~~~~   81 (300)
T TIGR03866         7 NEKDNTISVID--TATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL-PSGP-DPELFALH   81 (300)
T ss_pred             ecCCCEEEEEE--CCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-cCCC-CccEEEEC
Confidence            34466788887  345567778876654 7889999999876 57778999999999999887777 3343 35678999


Q ss_pred             eCCCCcEE-EEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-cEEEEECCCC
Q 004290          103 PETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQG  180 (763)
Q Consensus       103 p~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-~i~iwd~~~~  180 (763)
                      |+  ++.+ ++++.++.|++||+.+.          ..+..+. +...+.+++|+| ++.++++++.++ .+.+||.++.
T Consensus        82 ~~--g~~l~~~~~~~~~l~~~d~~~~----------~~~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~  147 (300)
T TIGR03866        82 PN--GKILYIANEDDNLVTVIDIETR----------KVLAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTY  147 (300)
T ss_pred             CC--CCEEEEEcCCCCeEEEEECCCC----------eEEeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCC
Confidence            99  5655 45567899999999862          2233343 234568899999 567777777765 4677898765


Q ss_pred             CCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEE-EEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004290          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMS  259 (763)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~-sgs~Dg~i~iwd~~~~~~~~~~~~~~~  259 (763)
                      +..           ..+.               ....+.+++|+|+ +.+|+ ++..++.|++||+++++.+..+.....
T Consensus       148 ~~~-----------~~~~---------------~~~~~~~~~~s~d-g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~  200 (300)
T TIGR03866       148 EIV-----------DNVL---------------VDQRPRFAEFTAD-GKELWVSSEIGGTVSVIDVATRKVIKKITFEIP  200 (300)
T ss_pred             eEE-----------EEEE---------------cCCCccEEEECCC-CCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc
Confidence            421           0000               0123457899998 56664 555699999999998765433211000


Q ss_pred             CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCeEEEEECCCC
Q 004290          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNHA  311 (763)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~-s~d~~i~iwd~~~~  311 (763)
                                 ...   ........++|+|++++++++ +.++.|.+||+.++
T Consensus       201 -----------~~~---~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~  239 (300)
T TIGR03866       201 -----------GVH---PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY  239 (300)
T ss_pred             -----------ccc---cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence                       000   001124568899999986665 45778999998763

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.86  E-value=1.5e-20  Score=194.36  Aligned_cols=213  Identities=15%  Similarity=0.235  Sum_probs=167.4

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee-CCCCcEEEEEeCCCcEEEEECCCCC
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFS  128 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p-~~~~~~l~s~s~dg~I~iwd~~~~~  128 (763)
                      .-+|++++.+|+|++||+|..-|.++|+++..-+.+..+ ..|...|.|+.|+. .-...+|++++.|+.|+|+|+... 
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-  536 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-  536 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-
Confidence            456999999999999999999999999999998888888 79999999999984 322578999999999999999863 


Q ss_pred             CCCCCCCCCCCceeeecccCceeEEEEecCCC-CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (763)
                              ..+++++.+|...|+++.|.-.+. ..+++++.|+.|.+ +......-.          ..+         .
T Consensus       537 --------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g----------~~f---------~  588 (1080)
T KOG1408|consen  537 --------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSG----------RLF---------P  588 (1080)
T ss_pred             --------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCc----------eec---------c
Confidence                    356889999999999999987443 46889999988754 333211000          000         0


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (763)
Q Consensus       208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~  287 (763)
                      -.........++.++..|. .+++++++.|..|+|||+.+++....|...                 ++|.+ ..-.|..
T Consensus       589 r~t~t~~ktTlYDm~Vdp~-~k~v~t~cQDrnirif~i~sgKq~k~FKgs-----------------~~~eG-~lIKv~l  649 (1080)
T KOG1408|consen  589 RHTQTLSKTTLYDMAVDPT-SKLVVTVCQDRNIRIFDIESGKQVKSFKGS-----------------RDHEG-DLIKVIL  649 (1080)
T ss_pred             ccccccccceEEEeeeCCC-cceEEEEecccceEEEeccccceeeeeccc-----------------ccCCC-ceEEEEE
Confidence            0011123456889999997 689999999999999999999866554321                 34544 4778999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCC
Q 004290          288 SPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       288 spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .|.|.||++++.|.++.++|..++
T Consensus       650 DPSgiY~atScsdktl~~~Df~sg  673 (1080)
T KOG1408|consen  650 DPSGIYLATSCSDKTLCFVDFVSG  673 (1080)
T ss_pred             CCCccEEEEeecCCceEEEEeccc
Confidence            999999999999999999998885

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=6.4e-21  Score=208.65  Aligned_cols=209  Identities=17%  Similarity=0.266  Sum_probs=149.4

Q ss_pred             EEEEeCCCCC-EEEEE----------eCCCcEEEEeCCC--Ce----EEEEEccCCCCceEEEEEeeCCCCc--EEEEEe
Q 004290           54 NAISWNSKGS-LLISG----------SDDTHINVWSYSS--RK----LLHSIETGHSANVFCTKFVPETSDE--LVVSGA  114 (763)
Q Consensus        54 ~~l~fsp~g~-~Lasg----------s~D~~v~iWd~~~--~~----~~~~~~~~h~~~V~~v~~~p~~~~~--~l~s~s  114 (763)
                      ..++|+|.+. +||+|          +.+.++-||.+..  ..    .+..+  ......+.++|.+.+++.  +|+.|.
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~~~g~~~~GlIaGG~   87 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWGSYGSHSHGLIAGGL   87 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc--cccccceeeeecccCCCccceeeccc
Confidence            4578999886 56554          3345566665542  22    22333  234567899999984221  599999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      .||.|.+||.....    ...+...+.....|.+.|..+.|++..++++++|+.||.|.|||+.+.+......       
T Consensus        88 edG~I~ly~p~~~~----~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-------  156 (1049)
T KOG0307|consen   88 EDGNIVLYDPASII----ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-------  156 (1049)
T ss_pred             cCCceEEecchhhc----cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-------
Confidence            99999999998620    1112355777889999999999999888899999999999999999865331110       


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (763)
                                      .......|.+++|+.....+|++++.+|++.|||+|..+.+..+..                  
T Consensus       157 ----------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~------------------  202 (1049)
T KOG0307|consen  157 ----------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD------------------  202 (1049)
T ss_pred             ----------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc------------------
Confidence                            1123567999999987778999999999999999998765543321                  


Q ss_pred             CCCCccceeEEEEcCCC-CEEEEEeCCC---eEEEEECCC
Q 004290          275 HGRSSLHLTHVTFSPNG-EEVLLSYSGE---HVYLMDVNH  310 (763)
Q Consensus       275 ~g~~~~~i~~v~~spdg-~~l~~~s~d~---~i~iwd~~~  310 (763)
                      .+.+ ..+..|+|+|+. ..|++++.|.   .|.+||++.
T Consensus       203 ~~~~-~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~  241 (1049)
T KOG0307|consen  203 TPGR-MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF  241 (1049)
T ss_pred             CCCc-cceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence            1111 258899999986 4566666643   789999877

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=2.5e-20  Score=183.60  Aligned_cols=234  Identities=19%  Similarity=0.274  Sum_probs=180.4

Q ss_pred             cccccccccchhhhhc-ccccee------------------eccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCe
Q 004290           24 PDVNHSLQMHSSLVRR-LSQERE------------------LEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK   83 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~-~~~~~~------------------l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~   83 (763)
                      +.++..|.||+..+.. ..+...                  -.+|++.|.+|+|+.+ .+.|||||.|.+|++||+.+++
T Consensus       198 Gtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~  277 (463)
T KOG0270|consen  198 GTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK  277 (463)
T ss_pred             eccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC
Confidence            3467788888854422 222222                  2379999999999875 4689999999999999999999


Q ss_pred             EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEE
Q 004290           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (763)
Q Consensus        84 ~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  163 (763)
                      +..++ ..|.+.|.+++|+|.. ...|++|+.|++|.+.|.+....         .-..++ ..+.|-.++|.|.....|
T Consensus       278 p~~s~-~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~---------s~~~wk-~~g~VEkv~w~~~se~~f  345 (463)
T KOG0270|consen  278 PKSSI-THHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSN---------SGKEWK-FDGEVEKVAWDPHSENSF  345 (463)
T ss_pred             cceeh-hhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccc---------cCceEE-eccceEEEEecCCCceeE
Confidence            99998 6899999999999986 89999999999999999995321         112222 457899999999888899


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEE
Q 004290          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (763)
Q Consensus       164 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iw  243 (763)
                      +++..||+|+-+|+|....                        .++....|...|.++++++..+.++++++.|+.|++|
T Consensus       346 ~~~tddG~v~~~D~R~~~~------------------------~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw  401 (463)
T KOG0270|consen  346 FVSTDDGTVYYFDIRNPGK------------------------PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLW  401 (463)
T ss_pred             EEecCCceEEeeecCCCCC------------------------ceeEEEeccCCcceEEecCCCCcceeeccccceEEEE
Confidence            9999999999999998753                        2444557889999999999889999999999999999


Q ss_pred             eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCE-EEEEeCCCeEEEEECCCCC
Q 004290          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE-VLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~-l~~~s~d~~i~iwd~~~~~  312 (763)
                      ++..-.+....                   .+...-+...|.++.|+-.+ |+.|+..+.+++||+.+..
T Consensus       402 ~~~~~~~~~v~-------------------~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  402 KFDVDSPKSVK-------------------EHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             eecCCCCcccc-------------------cccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence            99854421111                   11111113566677776554 5566667889999998854

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=3.8e-18  Score=176.71  Aligned_cols=254  Identities=14%  Similarity=0.209  Sum_probs=192.5

Q ss_pred             cccccccccchhhhhccccceeecccc-CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~-~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~  102 (763)
                      .+.+..|.||. ....+-+..++.|+. ..|.+++|+ ++..|+|.+.+|.|.-||+.+++.+..+ ....+.|++++.+
T Consensus        43 sRt~g~IEiwN-~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~  119 (691)
T KOG2048|consen   43 SRTDGNIEIWN-LSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAIN  119 (691)
T ss_pred             eccCCcEEEEc-cCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeC
Confidence            45677888887 334667788888875 579999999 4556889999999999999999999998 7888999999999


Q ss_pred             eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      |.  +..++.|+.||.+..++.....        .+....+...+++|.+++|+| ++..+++|+.||.|++||+.++..
T Consensus       120 p~--~~~l~IgcddGvl~~~s~~p~~--------I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t  188 (691)
T KOG2048|consen  120 PE--NTILAIGCDDGVLYDFSIGPDK--------ITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQT  188 (691)
T ss_pred             Cc--cceEEeecCCceEEEEecCCce--------EEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCce
Confidence            99  6999999999977777776522        233445556679999999999 557789999999999999998763


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (763)
                      .            .+.+.....     -......-|+++.|-.+  ..|++|.+-|+|.+||...+..+..+        
T Consensus       189 ~------------~~~~~~~d~-----l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS~--------  241 (691)
T KOG2048|consen  189 L------------HIITMQLDR-----LSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQSH--------  241 (691)
T ss_pred             E------------EEeeecccc-----cccCCceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhhh--------
Confidence            2            111111110     00113456788888865  59999999999999999988765443        


Q ss_pred             cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccc----eEeecCCCCeeeeecc
Q 004290          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA----MRYTVGDASKIMSFTP  331 (763)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~p  331 (763)
                                  .-|.. .|.+++..+++.++++++.|+.|..|...+.+...    ....+++.++.++..+
T Consensus       242 ------------~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~  301 (691)
T KOG2048|consen  242 ------------SCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE  301 (691)
T ss_pred             ------------hhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec
Confidence                        11333 59999999999999999999999999888865422    2333455566666554

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=6.5e-19  Score=165.75  Aligned_cols=259  Identities=16%  Similarity=0.215  Sum_probs=179.3

Q ss_pred             ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004290           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (763)
Q Consensus        47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw  122 (763)
                      .+|.+-|+++.|.+-|+.+|+|+.|++|+|||....    .+.... ..|.+.|..+.|.+..-|+.+|+++.|+++.||
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            479999999999999999999999999999997533    344455 689999999999765459999999999999999


Q ss_pred             ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC-CCEEEEEeCCCcEEEEECCCCCCCC-------------CCCC
Q 004290          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCP-------------PAGS  188 (763)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~~~~~~~~-------------~~~~  188 (763)
                      .-...+..+ ....+....++..-...|++|.|.|.. +-.+++++.||.+|||+.-......             ....
T Consensus        89 EE~~~~~~~-~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   89 EEQEKSEEA-HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eeccccccc-ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence            864322111 011234456677778899999999943 4578999999999999876543220             0000


Q ss_pred             CCc---------------------------ccceEEEecCCCc--eeeccCCCCCccceEEEEEeCCCC---cEEEEEeC
Q 004290          189 SHQ---------------------------ECRNILLDLRCGA--KRSLADPPKQTLSLKSCDISSTRP---HLLLVGGS  236 (763)
Q Consensus       189 ~~~---------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~i~~~p~~~---~~l~sgs~  236 (763)
                      .+.                           -....++....+.  -..+...++++.+|++|+|.|.-|   .+||+++.
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence            011                           1123344433333  234567788999999999999643   47999999


Q ss_pred             CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC-CCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          237 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE-HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      || |+||.+....... .......+.....+....+.. .+|.+ .|..+.|.-.|..|.+.+.||+|++|..+-
T Consensus       248 Dg-v~I~~v~~~~s~i-~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAI-EEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             Cc-EEEEEEeeccchh-hhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            99 9999998532110 000001111111111111222 34554 699999999999999999999999997765

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.84  E-value=5.7e-20  Score=169.09  Aligned_cols=229  Identities=12%  Similarity=0.133  Sum_probs=142.2

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      .+...|++|.+.|+++.|-.++. |.+|..-|.|++|++.+.+.+..+...|...|+.+.-.|+   ..+.+-+.|..+.
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L~   80 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLLI   80 (323)
T ss_pred             CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceEE
Confidence            46678899999999999987766 8899999999999999998887773367888999988886   6889999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-cEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      +|++...             .....|.-.++++.|.+.   -+...+... ..-.++-+..... ........++..+.+
T Consensus        81 lw~ia~s-------------~~i~i~Si~~nslgFCrf---Sl~~~~k~~eqll~yp~rgsde~-h~~D~g~~tqv~i~d  143 (323)
T KOG0322|consen   81 LWTIAYS-------------AFISIHSIVVNSLGFCRF---SLVKKPKNSEQLLEYPSRGSDET-HKQDGGDTTQVQIAD  143 (323)
T ss_pred             EEEccCc-------------ceEEEeeeeccccccccc---eeccCCCcchhheecCCcccchh-hhhccCccceeEccC
Confidence            9999852             223446666777777652   122222211 1112222211110 000001111111111


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCc--EEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPH--LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~--~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (763)
                      -.         .....+.+++..+....+.  ++++|-.+|.+.+||+.++..+..+...-          +.......|
T Consensus       144 d~---------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~----------kv~~~~ash  204 (323)
T KOG0322|consen  144 DS---------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSS----------KVESPNASH  204 (323)
T ss_pred             ch---------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccc----------ccccchhhc
Confidence            11         1123456777765443333  56788899999999999875443332110          000111224


Q ss_pred             CccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       278 ~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      .. +|.++.|.+.-..=++++.+..+..|+++.
T Consensus       205 ~q-pvlsldyas~~~rGisgga~dkl~~~Sl~~  236 (323)
T KOG0322|consen  205 KQ-PVLSLDYASSCDRGISGGADDKLVMYSLNH  236 (323)
T ss_pred             cC-cceeeeechhhcCCcCCCccccceeeeecc
Confidence            44 699999887655556677777777777765

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.1e-18  Score=180.53  Aligned_cols=211  Identities=14%  Similarity=0.168  Sum_probs=161.0

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccC-CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004290           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~  127 (763)
                      -..+|.+|||+.+.+.||.+-.||.|-||++...-....+..+ ....|.+++|++.   ..|++.+.+|.|.-||+.+.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~---~RLFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG---GRLFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC---CeEEeecCCceEEEEecccC
Confidence            3578999999999999999999999999999987544433244 4578999999954   68899999999999999973


Q ss_pred             CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (763)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (763)
                                ++...+....+.|.+|+.+| ....++.|+.||.++.++...++..              +         
T Consensus       101 ----------k~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~--------------~---------  146 (691)
T KOG2048|consen  101 ----------KQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKIT--------------Y---------  146 (691)
T ss_pred             ----------ceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEE--------------E---------
Confidence                      44667777889999999999 5588889999998887877665421              1         


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (763)
Q Consensus       208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~  287 (763)
                      -..+...+..|.+++|+|+ +..+++|+.||.|++||..+++.+......           ...+. .+ ...-|++|.|
T Consensus       147 ~r~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~-----------~d~l~-k~-~~~iVWSv~~  212 (691)
T KOG2048|consen  147 KRSLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHIITMQ-----------LDRLS-KR-EPTIVWSVLF  212 (691)
T ss_pred             EeecccccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEeeec-----------ccccc-cC-CceEEEEEEE
Confidence            1112234678999999998 678999999999999999988755411100           00000 11 2224899999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCC
Q 004290          288 SPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       288 spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      -.++. |++|..-|+|.+||...+
T Consensus       213 Lrd~t-I~sgDS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  213 LRDST-IASGDSAGTVTFWDSIFG  235 (691)
T ss_pred             eecCc-EEEecCCceEEEEcccCc
Confidence            87765 899999999999998774

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.1e-19  Score=184.26  Aligned_cols=236  Identities=21%  Similarity=0.317  Sum_probs=168.5

Q ss_pred             chhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC--------CeEEEEEccCCCCceEEEEEeeC
Q 004290           33 HSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--------RKLLHSIETGHSANVFCTKFVPE  104 (763)
Q Consensus        33 ~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~--------~~~~~~~~~~h~~~V~~v~~~p~  104 (763)
                      .+++.+++.+-.+++.|.++|+.++|.|....|++++.|++|++|+++.        -+.+.+| .+|.++|.|+++.++
T Consensus       277 k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n  355 (577)
T KOG0642|consen  277 KKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSN  355 (577)
T ss_pred             hhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCC
Confidence            3456667777779999999999999999999999999999999999932        2467888 799999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCCCCCCCCC-CCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDN-AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (763)
Q Consensus       105 ~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~  183 (763)
                        +..+++|+.||+|+.|++. ......+.. .......+.||.+.|+.+++++ ....|++++.||++++|+......+
T Consensus       356 --~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~  431 (577)
T KOG0642|consen  356 --GEHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPC  431 (577)
T ss_pred             --ceEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCcc
Confidence              7999999999999999876 322221111 1123467889999999999998 5577889999999999998776542


Q ss_pred             CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004290          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (763)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (763)
                      ..                        ..+.......++.|-.......++...-+.--++++...+.+..+.....+.  
T Consensus       432 ~f------------------------~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~--  485 (577)
T KOG0642|consen  432 TF------------------------GEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG--  485 (577)
T ss_pred             cc------------------------CCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc--
Confidence            11                        0111122234555544333344444444555555555554443332211111  


Q ss_pred             ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                                  ......++.|.++|.+...+++..|+.|+++|..++
T Consensus       486 ------------~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~  521 (577)
T KOG0642|consen  486 ------------PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG  521 (577)
T ss_pred             ------------ccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence                        011125889999999999999999999999998874

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.83  E-value=6.7e-20  Score=176.77  Aligned_cols=228  Identities=18%  Similarity=0.271  Sum_probs=169.5

Q ss_pred             hccccceeeccccCceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCCeEE---EEEccCCCCceEEEEEeeCCCCcEEEEE
Q 004290           38 RRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLL---HSIETGHSANVFCTKFVPETSDELVVSG  113 (763)
Q Consensus        38 ~~~~~~~~l~gH~~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~~~~---~~~~~~h~~~V~~v~~~p~~~~~~l~s~  113 (763)
                      +..+++.++.+|.+.=.+|+|||-. ..|+||.--+.|++|...++.-.   ..| .+|+..|..++|+|.. ...|+||
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf-~gH~~SVEDLqWSptE-~~vfaSc  276 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPF-TGHTKSVEDLQWSPTE-DGVFASC  276 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccc-cccccchhhhccCCcc-CceEEee
Confidence            5568899999999999999999932 24788888889999999887532   234 5799999999999986 7899999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004290          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (763)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  193 (763)
                      |.||+|+|||++.+..        .+....++|.+.|+.|.|+-..+ +|++|+.||+++|||+|+-+.-          
T Consensus       277 S~DgsIrIWDiRs~~~--------~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~----------  337 (440)
T KOG0302|consen  277 SCDGSIRIWDIRSGPK--------KAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG----------  337 (440)
T ss_pred             ecCceEEEEEecCCCc--------cceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC----------
Confidence            9999999999997532        22344489999999999998554 9999999999999999987622          


Q ss_pred             ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccccccc
Q 004290          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (763)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (763)
                                  ..+..+..|..+|++|.|+|.....|++++.|..|.|||+..............  ..++...|.-+.
T Consensus       338 ------------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~--~~L~dlPpQLLF  403 (440)
T KOG0302|consen  338 ------------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAA--EGLQDLPPQLLF  403 (440)
T ss_pred             ------------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccc--cchhcCCceeEE
Confidence                        234555678999999999998888999999999999999975443111111000  012222222222


Q ss_pred             CC-CCCccceeEEEEcCCCC-EEEEEeCCCe
Q 004290          274 EH-GRSSLHLTHVTFSPNGE-EVLLSYSGEH  302 (763)
Q Consensus       274 ~~-g~~~~~i~~v~~spdg~-~l~~~s~d~~  302 (763)
                      -+ |..  .|..|.|++.-. +|++.+.||.
T Consensus       404 VHqGQk--e~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  404 VHQGQK--EVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             Eecchh--HhhhheeccCCCCeEEEecccce
Confidence            22 222  388899998654 5566666764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=7.8e-19  Score=165.66  Aligned_cols=263  Identities=11%  Similarity=0.093  Sum_probs=187.7

Q ss_pred             cccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC
Q 004290           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (763)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~  105 (763)
                      -+..+++++....  .+...|+ |..++.+++|.+ ...+++|+.||.|+++|+.++.....  ..|..+|.|+.+++. 
T Consensus        33 WDgslrlYdv~~~--~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i--gth~~~i~ci~~~~~-  105 (323)
T KOG1036|consen   33 WDGSLRLYDVPAN--SLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI--GTHDEGIRCIEYSYE-  105 (323)
T ss_pred             ccCcEEEEeccch--hhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcceee--ccCCCceEEEEeecc-
Confidence            4566677764333  3334444 889999999987 55688999999999999998876543  579999999999998 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004290          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (763)
Q Consensus       106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~  185 (763)
                       ...+++|++|++|++||.+...          +...+. ....|.++...   ++.|+.|+.|..|.+||+|+.....+
T Consensus       106 -~~~vIsgsWD~~ik~wD~R~~~----------~~~~~d-~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q  170 (323)
T KOG1036|consen  106 -VGCVISGSWDKTIKFWDPRNKV----------VVGTFD-QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQ  170 (323)
T ss_pred             -CCeEEEcccCccEEEEeccccc----------cccccc-cCceEEEEecc---CCEEEEeecCceEEEEEcccccchhh
Confidence             6899999999999999999621          233333 33478888874   47888999999999999998763311


Q ss_pred             CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccc
Q 004290          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (763)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  265 (763)
                      .                       ....-...+.|+++.|. +.-+++++-||.|.+=.+...+.....   ....+|-+
T Consensus       171 ~-----------------------reS~lkyqtR~v~~~pn-~eGy~~sSieGRVavE~~d~s~~~~sk---kyaFkCHr  223 (323)
T KOG1036|consen  171 R-----------------------RESSLKYQTRCVALVPN-GEGYVVSSIEGRVAVEYFDDSEEAQSK---KYAFKCHR  223 (323)
T ss_pred             h-----------------------ccccceeEEEEEEEecC-CCceEEEeecceEEEEccCCchHHhhh---ceeEEeee
Confidence            0                       11123567899999995 667899999999887666543211100   00001111


Q ss_pred             ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCCCcccCCCC
Q 004290          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI  342 (763)
Q Consensus       266 ~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  342 (763)
                      ..     .....--.+|++++|+|-...|++|+.||.|.+||+.+.+...........+..++|+-++..+++....
T Consensus       224 ~~-----~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy  295 (323)
T KOG1036|consen  224 LS-----EKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY  295 (323)
T ss_pred             cc-----cCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence            10     0001112379999999999999999999999999999966554444445668889999888877766553

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=5.6e-19  Score=167.58  Aligned_cols=226  Identities=15%  Similarity=0.211  Sum_probs=162.7

Q ss_pred             eccccCceEEEEeCC-----CCCEEEEEeCCCcEEEEeCCCCe---EEEEEcc-CCCCceEEEEEeeCCC--CcEEEEEe
Q 004290           46 LEGHQGCVNAISWNS-----KGSLLISGSDDTHINVWSYSSRK---LLHSIET-GHSANVFCTKFVPETS--DELVVSGA  114 (763)
Q Consensus        46 l~gH~~~V~~l~fsp-----~g~~Lasgs~D~~v~iWd~~~~~---~~~~~~~-~h~~~V~~v~~~p~~~--~~~l~s~s  114 (763)
                      .++|+.+|..++|++     +...+|+++. ..+.|+......   .++.+.. .|....+.++|+-+.+  ..++|.|+
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            457889999999996     3356777766 488999887543   3333322 3778889999987653  46889999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      .-|.|+|.|+...          ++...+.+|.+.|+.|.++|..++++++++.|.+|++|++++..++           
T Consensus       113 ~~GvIrVid~~~~----------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv-----------  171 (385)
T KOG1034|consen  113 YLGVIRVIDVVSG----------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV-----------  171 (385)
T ss_pred             ceeEEEEEecchh----------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE-----------
Confidence            9999999999973          4477889999999999999999999999999999999999987632           


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCC--CCCCCccccc-----
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR--MSPPPCVNYF-----  267 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~-----  267 (763)
                      .           .+....+|...|.++.|+++ +.+|++++.|..|++|++...+....+...  ..+......|     
T Consensus       172 ~-----------VfGG~egHrdeVLSvD~~~~-gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~  239 (385)
T KOG1034|consen  172 A-----------VFGGVEGHRDEVLSVDFSLD-GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKT  239 (385)
T ss_pred             E-----------EecccccccCcEEEEEEcCC-CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccc
Confidence            1           22334578899999999997 689999999999999999854422222110  0011111111     


Q ss_pred             -ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004290          268 -CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (763)
Q Consensus       268 -~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~  308 (763)
                       .|......-|+. .|-|+.|-  |.++++-+-++.|.+|..
T Consensus       240 ~fp~fst~diHrn-yVDCvrw~--gd~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  240 HFPDFSTTDIHRN-YVDCVRWF--GDFILSKSCENAIVCWKP  278 (385)
T ss_pred             ccccccccccccc-hHHHHHHH--hhheeecccCceEEEEec
Confidence             111111123444 47777774  578888888999999965

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.7e-18  Score=163.49  Aligned_cols=193  Identities=16%  Similarity=0.196  Sum_probs=132.3

Q ss_pred             EEEEeCCCCeEEEEE----ccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCc
Q 004290           74 INVWSYSSRKLLHSI----ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (763)
Q Consensus        74 v~iWd~~~~~~~~~~----~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (763)
                      .+-|+.......+.+    +.+|...|++++|+.+  |..|++++.|+.|++|+++....+.     .++++.-. .-+.
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSd--GK~lat~~~Dr~Ir~w~~~DF~~~e-----Hr~~R~nv-e~dh  134 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSD--GKKLATISGDRSIRLWDVRDFENKE-----HRCIRQNV-EYDH  134 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEEcCC--CceeEEEeCCceEEEEecchhhhhh-----hhHhhccc-cCCC
Confidence            455666554433222    3799999999999999  8999999999999999998532111     11222211 1235


Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCc
Q 004290          150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH  229 (763)
Q Consensus       150 v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  229 (763)
                      .+.++|.|+-..+++++-...++++|-+...+--      ......+-+|       .+.....|...+..+-.... +.
T Consensus       135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG------~~~~~~v~~D-------~~~f~~kh~v~~i~iGiA~~-~k  200 (420)
T KOG2096|consen  135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG------SGSHHFVHID-------NLEFERKHQVDIINIGIAGN-AK  200 (420)
T ss_pred             ceEEEECCCcceEEEEEccCCEEEEEEeeecccC------CCCccccccc-------ccccchhcccceEEEeecCC-ce
Confidence            6889999988788888888889999987765421      0000011111       12233456667777766664 78


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004290          230 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (763)
Q Consensus       230 ~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~  309 (763)
                      +|++++.|..|.+|+++ |+.+..+.....                     .-+..+.||+|++|++++-.--|++|.+-
T Consensus       201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~---------------------~n~~aavSP~GRFia~~gFTpDVkVwE~~  258 (420)
T KOG2096|consen  201 YIMSASLDTKICLWDLK-GQLLQSIDTNQS---------------------SNYDAAVSPDGRFIAVSGFTPDVKVWEPI  258 (420)
T ss_pred             EEEEecCCCcEEEEecC-Cceeeeeccccc---------------------cccceeeCCCCcEEEEecCCCCceEEEEE
Confidence            99999999999999999 776655432111                     24557899999999999988889999765


Q ss_pred             C
Q 004290          310 H  310 (763)
Q Consensus       310 ~  310 (763)
                      -
T Consensus       259 f  259 (420)
T KOG2096|consen  259 F  259 (420)
T ss_pred             e
Confidence            4

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.81  E-value=2e-18  Score=168.51  Aligned_cols=213  Identities=17%  Similarity=0.283  Sum_probs=152.7

Q ss_pred             cCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCe---------EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           50 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRK---------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        50 ~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~---------~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      ..+|.++.|.++.. .||||+.|..|+||-+..+.         .+..+ ..|...|+++.|+|+  |.+|+||+.+|.|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~--gelLASg~D~g~v   89 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPD--GELLASGGDGGEV   89 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCC--cCeeeecCCCceE
Confidence            46799999999776 99999999999999876421         22334 789999999999999  8999999999999


Q ss_pred             EEEECCCCC------CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004290          120 RLFNLSRFS------GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (763)
Q Consensus       120 ~iwd~~~~~------~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  193 (763)
                      .+|-...-.      ........+.....+.+|...|+.++|+| ++.++++++.|..+++||+..++..          
T Consensus        90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~----------  158 (434)
T KOG1009|consen   90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLL----------  158 (434)
T ss_pred             EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeE----------
Confidence            999877210      00111122344567788999999999999 6689999999999999999998732          


Q ss_pred             ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCC--------CCCCccc
Q 004290          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM--------SPPPCVN  265 (763)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~  265 (763)
                                     .....|...+..++|.|. .+++++=+.|...+++.+...+.+.......        ......+
T Consensus       159 ---------------~~~~dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r  222 (434)
T KOG1009|consen  159 ---------------AILDDHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR  222 (434)
T ss_pred             ---------------eeccccccccceeecchh-hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee
Confidence                           223356778889999997 6899999999888888777655433222100        0011111


Q ss_pred             ccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 004290          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY  298 (763)
Q Consensus       266 ~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s  298 (763)
                      .|....+     .. -...++|+|||.+|++..
T Consensus       223 LfhDeTl-----ks-FFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  223 LFHDETL-----KS-FFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             eeecCch-----hh-hhhhcccCCCCcEEEccc
Confidence            1111101     11 256688999999888765

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=5.5e-18  Score=181.32  Aligned_cols=161  Identities=17%  Similarity=0.300  Sum_probs=128.3

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      ..|...-+.++|.|+  |.+|++|+.||.|++|+......        .| ..+.-+...|.+++...   ..|++|+.+
T Consensus        10 yaht~G~t~i~~d~~--gefi~tcgsdg~ir~~~~~sd~e--------~P-~ti~~~g~~v~~ia~~s---~~f~~~s~~   75 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPD--GEFICTCGSDGDIRKWKTNSDEE--------EP-ETIDISGELVSSIACYS---NHFLTGSEQ   75 (933)
T ss_pred             hhccCceEEEEEcCC--CCEEEEecCCCceEEeecCCccc--------CC-chhhccCceeEEEeecc---cceEEeecc
Confidence            468888999999999  78999999999999999886321        11 12222777888888743   588899999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      ++|.+|.+..++.-           ..+.              .-+.++++++|+.+ |+++|.|+.|-.|++-++....
T Consensus        76 ~tv~~y~fps~~~~-----------~iL~--------------Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~s  129 (933)
T KOG1274|consen   76 NTVLRYKFPSGEED-----------TILA--------------RFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDSS  129 (933)
T ss_pred             ceEEEeeCCCCCcc-----------ceee--------------eeeccceEEEEecC-CcEEEeecCceeEEEEeccccc
Confidence            99999998887622           0111              12467899999996 7899999999999999998765


Q ss_pred             CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ....+                    .||.. +|.+|.|+|.+.+|++++.||.|++|++.++
T Consensus       130 ~~~~l--------------------rgh~a-pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~  170 (933)
T KOG1274|consen  130 QEKVL--------------------RGHDA-PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG  170 (933)
T ss_pred             hheee--------------------cccCC-ceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence            43332                    56766 6999999999999999999999999999985

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=3.9e-19  Score=176.85  Aligned_cols=264  Identities=18%  Similarity=0.249  Sum_probs=197.7

Q ss_pred             CCchhhhhhccccCC---Ccccccccccchhhhhc--cccceeecccc-CceEEEEeCCCCCEEEEEeCCCcEEEEeCCC
Q 004290            8 DGSIYDMLDTRHTDT---RPDVNHSLQMHSSLVRR--LSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSS   81 (763)
Q Consensus         8 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~l~gH~-~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~   81 (763)
                      .++..++.+++....   +-.-++.+.+|...-+.  +..+..+.|.. .+|.|..++   .++++|+..++|+|||++.
T Consensus        34 ~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S---~y~~sgG~~~~Vkiwdl~~  110 (673)
T KOG4378|consen   34 EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS---LYEISGGQSGCVKIWDLRA  110 (673)
T ss_pred             CCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc---eeeeccCcCceeeehhhHH
Confidence            445667777766522   23356777777655442  33444455542 345555544   8999999999999999995


Q ss_pred             CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecc-cCceeEEEEecCCC
Q 004290           82 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNP  160 (763)
Q Consensus        82 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~  160 (763)
                       +.++.++.+|...|+++.++-.  +.+|++++..|.|.|..+.++..          ...|... ...|+-+.|+|...
T Consensus       111 -kl~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiiih~~~t~~~----------tt~f~~~sgqsvRll~ys~skr  177 (673)
T KOG4378|consen  111 -KLIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIIIHGTKTKQK----------TTTFTIDSGQSVRLLRYSPSKR  177 (673)
T ss_pred             -HHHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEEEecccCcc----------ccceecCCCCeEEEeecccccc
Confidence             4444555899999999999988  79999999999999999987432          2334322 45667899999887


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004290          161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (763)
Q Consensus       161 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i  240 (763)
                      .+|.+++.+|.|.+||+....+.                        ......|..+...|+|+|.+..+|++.+.|..|
T Consensus       178 ~lL~~asd~G~VtlwDv~g~sp~------------------------~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki  233 (673)
T KOG4378|consen  178 FLLSIASDKGAVTLWDVQGMSPI------------------------FHASEAHSAPCRGICFSPSNEALLVSVGYDKKI  233 (673)
T ss_pred             eeeEeeccCCeEEEEeccCCCcc------------------------cchhhhccCCcCcceecCCccceEEEecccceE
Confidence            88999999999999999876532                        233345788889999999999999999999999


Q ss_pred             EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCcc-ceEee
Q 004290          241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR-AMRYT  319 (763)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~-~~~~~  319 (763)
                      .+||.+.......+          .+            ..+.+.|+|+++|.+|++|...|.|+.||++..+.+ .....
T Consensus       234 ~~yD~~s~~s~~~l----------~y------------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa  291 (673)
T KOG4378|consen  234 NIYDIRSQASTDRL----------TY------------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA  291 (673)
T ss_pred             EEeeccccccccee----------ee------------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence            99999965433221          11            115899999999999999999999999999986643 34555


Q ss_pred             cCCCCeeeeeccCC
Q 004290          320 VGDASKIMSFTPTL  333 (763)
Q Consensus       320 ~~~~~~~~~~~p~~  333 (763)
                      +...+..++|-|..
T Consensus       292 h~~sVt~vafq~s~  305 (673)
T KOG4378|consen  292 HDASVTRVAFQPSP  305 (673)
T ss_pred             cccceeEEEeeecc
Confidence            66778888887754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=8.8e-18  Score=160.51  Aligned_cols=199  Identities=14%  Similarity=0.228  Sum_probs=151.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCcee
Q 004290           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL  142 (763)
Q Consensus        63 ~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  142 (763)
                      ..+|++-..|.|++||..+++.+..| .++...++.++|......+.+.+|+.||+|++||++.....        ....
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~--------a~~~  111 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES--------ARIS  111 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh--------hhee
Confidence            57888888999999999999999999 89999999999998533789999999999999999975432        2445


Q ss_pred             eeccc-CceeEEEEecCCCCEEEEEeC----CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccc
Q 004290          143 YQCHT-RRVKKLAVEVGNPHVVWSASE----DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS  217 (763)
Q Consensus       143 ~~~h~-~~v~~l~~sp~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (763)
                      +..+. .+..+++... ..+++++|..    +-.|.+||+|..+...                       -.....|...
T Consensus       112 ~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l-----------------------~~~~eSH~DD  167 (376)
T KOG1188|consen  112 WTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLL-----------------------RQLNESHNDD  167 (376)
T ss_pred             ccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchh-----------------------hhhhhhccCc
Confidence            55555 4566777665 4577777653    6789999999987420                       1112357889


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC-CEEEE
Q 004290          218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLL  296 (763)
Q Consensus       218 v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg-~~l~~  296 (763)
                      |+++.|+|.++++|++||.||.|.+||+..-..-.         ..+..+        .+.. .|..+.|..++ +.|.+
T Consensus       168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeD---------aL~~vi--------N~~s-SI~~igw~~~~ykrI~c  229 (376)
T KOG1188|consen  168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEED---------ALLHVI--------NHGS-SIHLIGWLSKKYKRIMC  229 (376)
T ss_pred             ceeEEecCCCCCeEEeecccceEEeeecCCCcchh---------hHHHhh--------cccc-eeeeeeeecCCcceEEE
Confidence            99999999999999999999999999997532110         001110        1222 49999999887 45888


Q ss_pred             EeCCCeEEEEECCCCC
Q 004290          297 SYSGEHVYLMDVNHAG  312 (763)
Q Consensus       297 ~s~d~~i~iwd~~~~~  312 (763)
                      -+..+...+|+++.+.
T Consensus       230 lTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  230 LTHMETFAIYELEDGS  245 (376)
T ss_pred             EEccCceeEEEccCCC
Confidence            9999999999999864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.80  E-value=5.9e-18  Score=168.53  Aligned_cols=223  Identities=13%  Similarity=0.204  Sum_probs=154.4

Q ss_pred             cccccchhhhhccccceeeccc--cCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCC--eEEEEEccCCCCceEEEEEe
Q 004290           28 HSLQMHSSLVRRLSQERELEGH--QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFV  102 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~gH--~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~--~~~~~~~~~h~~~V~~v~~~  102 (763)
                      .++++|+...  +...-.+..|  .-.|.++.|+.... ..|+.+.|+.+++|.-...  +....- ......-+|++..
T Consensus        12 d~~kl~D~s~--~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~-k~~gd~~~Cv~~~   88 (673)
T KOG4378|consen   12 DKTKLSDFSD--LETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVR-KLTGDNAFCVACA   88 (673)
T ss_pred             CceEEeeccc--ccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceee-ccccchHHHHhhh
Confidence            4667777333  3222233323  23499999987664 2345567889999974432  221111 1112244555555


Q ss_pred             eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      ..  ..++++|+..+.|+|||++..          .+.+.+++|...|++|.++. ...+|++++..|.|.|..+.++..
T Consensus        89 s~--S~y~~sgG~~~~Vkiwdl~~k----------l~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~  155 (673)
T KOG4378|consen   89 SQ--SLYEISGGQSGCVKIWDLRAK----------LIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQK  155 (673)
T ss_pred             hc--ceeeeccCcCceeeehhhHHH----------HHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCcc
Confidence            44  479999999999999999951          34677899999999999988 558999999999999999988763


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (763)
                      ....                        ..+....|.-+.|+|....+|.+++.+|.|.+||+....++..+.       
T Consensus       156 tt~f------------------------~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~-------  204 (673)
T KOG4378|consen  156 TTTF------------------------TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS-------  204 (673)
T ss_pred             ccce------------------------ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh-------
Confidence            3111                        011233566889999877788999999999999998766543332       


Q ss_pred             cccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCeEEEEECCC
Q 004290          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~i~~v~~spdg-~~l~~~s~d~~i~iwd~~~  310 (763)
                                  ..|.. +...|+|+|.. ..|++.+.|..|++||+..
T Consensus       205 ------------~~HsA-P~~gicfspsne~l~vsVG~Dkki~~yD~~s  240 (673)
T KOG4378|consen  205 ------------EAHSA-PCRGICFSPSNEALLVSVGYDKKINIYDIRS  240 (673)
T ss_pred             ------------hhccC-CcCcceecCCccceEEEecccceEEEeeccc
Confidence                        22444 68899999965 4566677799999999986

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.80  E-value=9.2e-18  Score=156.81  Aligned_cols=180  Identities=20%  Similarity=0.294  Sum_probs=148.5

Q ss_pred             ccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCC-CcEEEEEeCCCcEEEEEC
Q 004290           47 EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-DELVVSGAGDAEVRLFNL  124 (763)
Q Consensus        47 ~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~-~~~l~s~s~dg~I~iwd~  124 (763)
                      .+|+..|.++.|-| |..++.+++.|.+++|||..+-+....|  ...+.|.+-+++|-.. -.++++|..|-.|++-|+
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi  175 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI  175 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence            57899999999999 5668889999999999999998888777  4678899999998532 246778888999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                      ..+          .+.+.+.+|.+.|.++.|+|.....|+||+.||.|++||+|...-+           ....|.+...
T Consensus       176 ~SG----------s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc-----------f~~lD~hn~k  234 (397)
T KOG4283|consen  176 ASG----------SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC-----------FRVLDQHNTK  234 (397)
T ss_pred             cCC----------cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce-----------eEEeecccCc
Confidence            974          3478999999999999999988889999999999999999987533           2223333322


Q ss_pred             e-eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 004290          205 K-RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (763)
Q Consensus       205 ~-~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~  250 (763)
                      . ..+...+.|.+.|+.++|..+ +.++++.+.|..+++|+..++..
T Consensus       235 ~~p~~~~n~ah~gkvngla~tSd-~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  235 RPPILKTNTAHYGKVNGLAWTSD-ARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             cCccccccccccceeeeeeeccc-chhhhhccCccceEEeecccCcc
Confidence            2 234446788999999999997 78999999999999999998863

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=3.3e-18  Score=168.82  Aligned_cols=202  Identities=18%  Similarity=0.281  Sum_probs=159.0

Q ss_pred             EEEEeCC-------CCCEEEEEeCCCcEEEEeCCCCeE--------------E-----E-EEccCCCCceEEEEEeeCCC
Q 004290           54 NAISWNS-------KGSLLISGSDDTHINVWSYSSRKL--------------L-----H-SIETGHSANVFCTKFVPETS  106 (763)
Q Consensus        54 ~~l~fsp-------~g~~Lasgs~D~~v~iWd~~~~~~--------------~-----~-~~~~~h~~~V~~v~~~p~~~  106 (763)
                      .|++|..       -|+++|.|..|..|.|||+.-...              .     + ....+|+..|.++.|+... 
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~-  255 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF-  255 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc-
Confidence            4666643       368999999999999999852110              0     0 0114799999999999875 


Q ss_pred             CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (763)
Q Consensus       107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  186 (763)
                      .+.|+|||.|.+|++||+.++          +|..++..|.+.|.++.|+|..+.++++|+.|++|.+.|.|.....   
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g----------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s---  322 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTG----------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS---  322 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCC----------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc---
Confidence            789999999999999999984          4577888899999999999999999999999999999999974422   


Q ss_pred             CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC-CCcccCCCCCCCCccc
Q 004290          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVN  265 (763)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~  265 (763)
                              ...|.              -.+.|-.++|+|.....++++..||+|+-+|+|... ++.++           
T Consensus       323 --------~~~wk--------------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~-----------  369 (463)
T KOG0270|consen  323 --------GKEWK--------------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL-----------  369 (463)
T ss_pred             --------CceEE--------------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE-----------
Confidence                    12221              135678899999888999999999999999999752 22222           


Q ss_pred             ccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCeEEEEECCCCC
Q 004290          266 YFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       266 ~~~~~~~~~~g~~~~~i~~v~~spdg-~~l~~~s~d~~i~iwd~~~~~  312 (763)
                               ..|.. .|.+|++++.- .+|++++.|+.|++|++....
T Consensus       370 ---------~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  370 ---------KAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             ---------EeccC-CcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence                     44666 69999999865 457778889999999997743

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.78  E-value=1.4e-17  Score=155.23  Aligned_cols=237  Identities=17%  Similarity=0.270  Sum_probs=174.2

Q ss_pred             hccccceeec-cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE-EEEEc----cCCCCceEEEEEeeCCCCcEEE
Q 004290           38 RRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-LHSIE----TGHSANVFCTKFVPETSDELVV  111 (763)
Q Consensus        38 ~~~~~~~~l~-gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~-~~~~~----~~h~~~V~~v~~~p~~~~~~l~  111 (763)
                      .+++++..|. .|-+.|.|+.|.|++..||+-. |..|.+|+++.+.. +..+.    .+|....++-+|+|..+++.++
T Consensus       110 ~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~  188 (370)
T KOG1007|consen  110 STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA  188 (370)
T ss_pred             chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE
Confidence            3456666665 6778999999999999998876 78999999988765 33332    2456678899999976688888


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004290          112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  191 (763)
Q Consensus       112 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  191 (763)
                      +.+ |+++..||+++...         ....-.+|...|..|.|+|+...+|+||+.||.|++||.|..+.         
T Consensus       189 tt~-d~tl~~~D~RT~~~---------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~---------  249 (370)
T KOG1007|consen  189 TTS-DSTLQFWDLRTMKK---------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF---------  249 (370)
T ss_pred             EeC-CCcEEEEEccchhh---------hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc---------
Confidence            875 89999999997431         13334679999999999998888999999999999999998763         


Q ss_pred             ccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCC----CCC----Cc
Q 004290          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM----SPP----PC  263 (763)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~----~~~----~~  263 (763)
                                     .+...++|.-.|.++.|+|...+++++|++|..|.+|.......-..+....    .+.    +-
T Consensus       250 ---------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer  314 (370)
T KOG1007|consen  250 ---------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEER  314 (370)
T ss_pred             ---------------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHh
Confidence                           3566678899999999999888899999999999999887544222111110    000    01


Q ss_pred             ccccccccccC-CCCCccceeEEEEcCCCCEEEEE-eCCCeEEEEECCC
Q 004290          264 VNYFCPMHLSE-HGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH  310 (763)
Q Consensus       264 ~~~~~~~~~~~-~g~~~~~i~~v~~spdg~~l~~~-s~d~~i~iwd~~~  310 (763)
                      ++.+..+.+.. ..|.. .|.+++||.-..+++++ +.||.+.|=.+..
T Consensus       315 ~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  315 VKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            11111111211 23555 59999999877776655 5699998876654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=3.2e-18  Score=187.78  Aligned_cols=262  Identities=19%  Similarity=0.253  Sum_probs=187.9

Q ss_pred             cccCCCcccccccccchhhhhcc----ccceeeccccCceEEEEeCCCCCE----EEEEeCCCcEEEEeCCC---C---e
Q 004290           18 RHTDTRPDVNHSLQMHSSLVRRL----SQERELEGHQGCVNAISWNSKGSL----LISGSDDTHINVWSYSS---R---K   83 (763)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~gH~~~V~~l~fsp~g~~----Lasgs~D~~v~iWd~~~---~---~   83 (763)
                      ..++.+.+.+.++.++......-    +++..+.. ....+.|+|.+.|..    ||.|.+||.|.+||...   +   .
T Consensus        29 q~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s-~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~  107 (1049)
T KOG0307|consen   29 QQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS-SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE  107 (1049)
T ss_pred             hccccccccccccceeeecccCccccccccccccc-cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchH
Confidence            34455555666667766544443    35555543 456899999997754    89999999999999865   2   2


Q ss_pred             EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCcee-eecccCceeEEEEecCCCCE
Q 004290           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHV  162 (763)
Q Consensus        84 ~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~  162 (763)
                      .+.+. ..|.+.|..+.|++.. +++|++|+.||.|.|||+...+.         +... -..-.+.|.+|+|+....++
T Consensus       108 ~la~~-~~h~G~V~gLDfN~~q-~nlLASGa~~geI~iWDlnn~~t---------P~~~~~~~~~~eI~~lsWNrkvqhI  176 (1049)
T KOG0307|consen  108 VLATK-SKHTGPVLGLDFNPFQ-GNLLASGADDGEILIWDLNKPET---------PFTPGSQAPPSEIKCLSWNRKVSHI  176 (1049)
T ss_pred             HHhhh-cccCCceeeeeccccC-CceeeccCCCCcEEEeccCCcCC---------CCCCCCCCCcccceEeccchhhhHH
Confidence            34444 6899999999999996 77999999999999999997431         1111 12246789999999888889


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---Cc
Q 004290          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AF  239 (763)
Q Consensus       163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---g~  239 (763)
                      |++++.+|.+.|||+|..+.+.....                      . .....+..++|+|++...+++++.|   -.
T Consensus       177 LAS~s~sg~~~iWDlr~~~pii~ls~----------------------~-~~~~~~S~l~WhP~~aTql~~As~dd~~Pv  233 (1049)
T KOG0307|consen  177 LASGSPSGRAVIWDLRKKKPIIKLSD----------------------T-PGRMHCSVLAWHPDHATQLLVASGDDSAPV  233 (1049)
T ss_pred             hhccCCCCCceeccccCCCccccccc----------------------C-CCccceeeeeeCCCCceeeeeecCCCCCce
Confidence            99999999999999999865421111                      1 1124577899999988888888876   45


Q ss_pred             EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCeEEEEECCCCCccceEe
Q 004290          240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAMRY  318 (763)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg-~~l~~~s~d~~i~iwd~~~~~~~~~~~  318 (763)
                      |.+||+|.-.            ..++.+       .+|.. .|.++.|++.+ ++|++++.|+.|.+|+.++++......
T Consensus       234 iqlWDlR~as------------sP~k~~-------~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p  293 (1049)
T KOG0307|consen  234 IQLWDLRFAS------------SPLKIL-------EGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP  293 (1049)
T ss_pred             eEeecccccC------------Cchhhh-------ccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence            9999998532            112222       45665 49999999966 888899999999999999966443333


Q ss_pred             ecCCCCeeeeeccCCC
Q 004290          319 TVGDASKIMSFTPTLN  334 (763)
Q Consensus       319 ~~~~~~~~~~~~p~~~  334 (763)
                      ..+.=...+.|.|...
T Consensus       294 ~~~nW~fdv~w~pr~P  309 (1049)
T KOG0307|consen  294 AQGNWCFDVQWCPRNP  309 (1049)
T ss_pred             CCCcceeeeeecCCCc
Confidence            3333344455665443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=1.5e-18  Score=182.89  Aligned_cols=180  Identities=24%  Similarity=0.361  Sum_probs=146.0

Q ss_pred             cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCC
Q 004290           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD  107 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~  107 (763)
                      ..+.....++++.+.++.|.||...|.|+.|...|.++++|+.|..|+||..+++.++... .||.+.|+.++.+.+  .
T Consensus       168 ~~~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~~--n  244 (1113)
T KOG0644|consen  168 FSIAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSSN--N  244 (1113)
T ss_pred             eeecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccchh--h
Confidence            4555556788999999999999999999999999999999999999999999999999999 899999999999988  6


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290          108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG  187 (763)
Q Consensus       108 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  187 (763)
                      .++++++.|..|++|.+..+          .++..+.+|++.|++|+|+|.     .+.+.||++++||.+-.-..    
T Consensus       245 ~~iaaaS~D~vIrvWrl~~~----------~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~----  305 (1113)
T KOG0644|consen  245 TMIAAASNDKVIRVWRLPDG----------APVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRI----  305 (1113)
T ss_pred             hhhhhcccCceEEEEecCCC----------chHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccc----
Confidence            89999999999999999873          568899999999999999993     37889999999999821100    


Q ss_pred             CCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                                +..+     ..  .......+.++.|... +..+++|+.|+.-+.|.+..
T Consensus       306 ----------y~pr-----p~--~~~~~~~~~s~~~~~~-~~~f~Tgs~d~ea~n~e~~~  347 (1113)
T KOG0644|consen  306 ----------YVPR-----PL--KFTEKDLVDSILFENN-GDRFLTGSRDGEARNHEFEQ  347 (1113)
T ss_pred             ----------cCCC-----CC--Ccccccceeeeecccc-ccccccccCCcccccchhhH
Confidence                      0000     00  0011234556666664 67899999999888887653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=1.7e-17  Score=161.22  Aligned_cols=231  Identities=17%  Similarity=0.260  Sum_probs=167.6

Q ss_pred             ceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCe-------EEEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004290           43 ERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (763)
Q Consensus        43 ~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~-------~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s  114 (763)
                      .-.+.||+++|..++|+| +...|||||+|.+|.||++..+.       .+..+ .+|...|.-++|+|.- .+.|++++
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrVg~V~wHPtA-~NVLlsag  151 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRVGLVQWHPTA-PNVLLSAG  151 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEE-eecceeEEEEeecccc-hhhHhhcc
Confidence            345689999999999999 66789999999999999987542       34455 7999999999999986 78999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      .|.+|.+||+.++..          +..+. |.+.|++|.|+- ++.+|+|.+.|+.|+|||.++++.....        
T Consensus       152 ~Dn~v~iWnv~tgea----------li~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~--------  211 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEA----------LITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEG--------  211 (472)
T ss_pred             CCceEEEEeccCCce----------eeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeec--------
Confidence            999999999998532          44455 999999999998 7799999999999999999998743111        


Q ss_pred             eEEEecCCCceeeccCCCCCcc-ceEEEEEeCCCCcEEEEEe---CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccc
Q 004290          195 NILLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVGG---SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  270 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~~l~sgs---~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (763)
                                       ..|.+ .-..+.|-.+ +.++-+|.   ++..+-+||..+...-..+          ..+   
T Consensus       212 -----------------~~heG~k~~Raifl~~-g~i~tTGfsr~seRq~aLwdp~nl~eP~~~----------~el---  260 (472)
T KOG0303|consen  212 -----------------VAHEGAKPARAIFLAS-GKIFTTGFSRMSERQIALWDPNNLEEPIAL----------QEL---  260 (472)
T ss_pred             -----------------ccccCCCcceeEEecc-CceeeeccccccccceeccCcccccCccee----------EEe---
Confidence                             11111 1223345554 55555553   5788999998876422111          000   


Q ss_pred             cccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCCc---cceEeecCCCCeeeeeccC
Q 004290          271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGG---RAMRYTVGDASKIMSFTPT  332 (763)
Q Consensus       271 ~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~p~  332 (763)
                            ..+..|.---|.||...|+.++. |+.|+.|.+.....   ....+...++.+.+.|.|.
T Consensus       261 ------DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  261 ------DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             ------ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence                  11113555568899998887776 99999999988441   1223444566667777764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.77  E-value=1.6e-17  Score=155.01  Aligned_cols=233  Identities=16%  Similarity=0.265  Sum_probs=174.8

Q ss_pred             cccCceEEEEeCCCC-----CEEEEEeCCCcEEEEeCCCC--eE-EEE-E----ccCCCCceEEEEEeeCCCCcEEEEEe
Q 004290           48 GHQGCVNAISWNSKG-----SLLISGSDDTHINVWSYSSR--KL-LHS-I----ETGHSANVFCTKFVPETSDELVVSGA  114 (763)
Q Consensus        48 gH~~~V~~l~fsp~g-----~~Lasgs~D~~v~iWd~~~~--~~-~~~-~----~~~h~~~V~~v~~~p~~~~~~l~s~s  114 (763)
                      .|..+++.+.|.|+.     .+|||.+.  .+|||.+...  +. ... +    ...+..++++..|+.-. .++|.+++
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d-p~~igtSS  170 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD-PNLIGTSS  170 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC-cceeEeec
Confidence            588999999999976     47887664  8999998732  11 111 1    13466899999999753 68999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      -|.+..|||++++..       ......+.+|...|+.|+|...+..+|+++|.||.|++||+|..+..           
T Consensus       171 iDTTCTiWdie~~~~-------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS-----------  232 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVS-------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS-----------  232 (364)
T ss_pred             ccCeEEEEEEeeccc-------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-----------
Confidence            999999999997511       12244567899999999999877789999999999999999987632           


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC-CcEEEEeCCCCCCCcccCCCCCCCCccccccccccc
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (763)
                                 ..+.+.+....++..++|++.+++++|+-..| ..|.|.|+|.-.            ..+..       
T Consensus       233 -----------TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~------------tpva~-------  282 (364)
T KOG0290|consen  233 -----------TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC------------TPVAR-------  282 (364)
T ss_pred             -----------eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC------------cceeh-------
Confidence                       12233333356788999999999999987766 569999999632            11111       


Q ss_pred             CCCCCccceeEEEEcCC-CCEEEEEeCCCeEEEEECCCCCc-----cceEeecCCCCeeeeeccC
Q 004290          274 EHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHAGG-----RAMRYTVGDASKIMSFTPT  332 (763)
Q Consensus       274 ~~g~~~~~i~~v~~spd-g~~l~~~s~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~p~  332 (763)
                      .++|.. .|++++|.|. ...|.+++.|..+.+||+.....     +...+..+..++.+.|+|.
T Consensus       283 L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~  346 (364)
T KOG0290|consen  283 LRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSS  346 (364)
T ss_pred             hhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeeccc
Confidence            156776 5999999995 56788999999999999987543     3344556777777888764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3e-17  Score=162.63  Aligned_cols=237  Identities=10%  Similarity=0.146  Sum_probs=176.1

Q ss_pred             ccCCCcccccccccchhhhhccccceeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEE--EEccCCC-C
Q 004290           19 HTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLH--SIETGHS-A   94 (763)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~--~~~~~h~-~   94 (763)
                      .+...++.++.++|+.-.-++...++.+.--..+|.+++|.|+|. .+++++.-..+..||+++.+...  .. .++. .
T Consensus       226 plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~-~g~e~~  304 (514)
T KOG2055|consen  226 PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP-YGVEEK  304 (514)
T ss_pred             ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC-CCcccc
Confidence            344457788999999988888888888887789999999999998 89999999999999999876433  22 3443 4


Q ss_pred             ceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004290           95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ  174 (763)
Q Consensus        95 ~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~i  174 (763)
                      .+.....+|+  +++|+..+..|.|.+.-..++          +.+.+++ ..+.|..++|+. ++..|++++.+|.|.+
T Consensus       305 ~~e~FeVShd--~~fia~~G~~G~I~lLhakT~----------eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  305 SMERFEVSHD--SNFIAIAGNNGHIHLLHAKTK----------ELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYV  370 (514)
T ss_pred             hhheeEecCC--CCeEEEcccCceEEeehhhhh----------hhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEE
Confidence            5677888999  689999999999999988873          3466665 678899999998 5577778888999999


Q ss_pred             EECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCccc
Q 004290          175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (763)
Q Consensus       175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~  254 (763)
                      ||++....           ...+.+             .....-++++.+++ +.+||+|+..|.|.|||..+.-.-   
T Consensus       371 ~nl~~~~~-----------~~rf~D-------------~G~v~gts~~~S~n-g~ylA~GS~~GiVNIYd~~s~~~s---  422 (514)
T KOG2055|consen  371 WNLRQNSC-----------LHRFVD-------------DGSVHGTSLCISLN-GSYLATGSDSGIVNIYDGNSCFAS---  422 (514)
T ss_pred             EecCCcce-----------EEEEee-------------cCccceeeeeecCC-CceEEeccCcceEEEeccchhhcc---
Confidence            99998752           233332             11123357777786 789999999999999997753211   


Q ss_pred             CCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC--CCeEEEEECCC
Q 004290          255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS--GEHVYLMDVNH  310 (763)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~--d~~i~iwd~~~  310 (763)
                          ..|.++..+.       .... .|++++|+||++.|+.+|.  +..+++--+.+
T Consensus       423 ----~~PkPik~~d-------NLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS  468 (514)
T KOG2055|consen  423 ----TNPKPIKTVD-------NLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPS  468 (514)
T ss_pred             ----CCCCchhhhh-------hhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence                0111222210       0111 5999999999999988876  56666665544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.76  E-value=7.6e-17  Score=165.91  Aligned_cols=176  Identities=18%  Similarity=0.326  Sum_probs=135.0

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~  131 (763)
                      +|+.++|-|||..|+.+..| .+.|||...|..+.++ .+|...|+|++|+.+  |..++||+.|+.|.+|+....    
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtL-KgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~klE----   85 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKLE----   85 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCccccccc-ccccceEEEEEEccC--CceeccCCCceeEEEeccccc----
Confidence            89999999999988877654 8999999999999999 899999999999999  899999999999999998741    


Q ss_pred             CCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCC
Q 004290          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (763)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (763)
                             -+..+ .|.+.|.||.|+| -.+.++|++- ...-+|........                           .
T Consensus        86 -------G~LkY-SH~D~IQCMsFNP-~~h~LasCsL-sdFglWS~~qK~V~---------------------------K  128 (1081)
T KOG1538|consen   86 -------GILKY-SHNDAIQCMSFNP-ITHQLASCSL-SDFGLWSPEQKSVS---------------------------K  128 (1081)
T ss_pred             -------ceeee-ccCCeeeEeecCc-hHHHhhhcch-hhccccChhhhhHH---------------------------h
Confidence                   13333 5999999999999 5578888875 34667876544311                           0


Q ss_pred             CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC
Q 004290          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (763)
Q Consensus       212 ~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg  291 (763)
                      ......+.+++|..+ |.+|+.|-.+|+|.|-+......+ .                  +...|..+.+|.+++|+|..
T Consensus       129 ~kss~R~~~CsWtnD-GqylalG~~nGTIsiRNk~gEek~-~------------------I~Rpgg~Nspiwsi~~~p~s  188 (1081)
T KOG1538|consen  129 HKSSSRIICCSWTND-GQYLALGMFNGTISIRNKNGEEKV-K------------------IERPGGSNSPIWSICWNPSS  188 (1081)
T ss_pred             hhhheeEEEeeecCC-CcEEEEeccCceEEeecCCCCcce-E------------------EeCCCCCCCCceEEEecCCC
Confidence            012356889999997 799999999999998754322111 1                  11123344479999999964


Q ss_pred             C
Q 004290          292 E  292 (763)
Q Consensus       292 ~  292 (763)
                      .
T Consensus       189 g  189 (1081)
T KOG1538|consen  189 G  189 (1081)
T ss_pred             C
Confidence            3

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=9.4e-17  Score=151.58  Aligned_cols=269  Identities=14%  Similarity=0.141  Sum_probs=184.0

Q ss_pred             CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~  102 (763)
                      .+-.+.++.||+  +.+....+.|.+|..+|.+++||+||++|+|+|.|..|++||+..|.+++.+  -..++|+.+.|+
T Consensus        40 vGc~nG~vvI~D--~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri--rf~spv~~~q~h  115 (405)
T KOG1273|consen   40 VGCANGRVVIYD--FDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--RFDSPVWGAQWH  115 (405)
T ss_pred             eeccCCcEEEEE--ccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--EccCccceeeec
Confidence            355688999999  5566688999999999999999999999999999999999999999999888  467899999999


Q ss_pred             eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      |.. .+..+..-.+..-.+-++..+...++-      ...-..-.....+..|.+ .|+++++|...|.+.++|..+.+.
T Consensus       116 p~k-~n~~va~~~~~sp~vi~~s~~~h~~Lp------~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~  187 (405)
T KOG1273|consen  116 PRK-RNKCVATIMEESPVVIDFSDPKHSVLP------KDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLEC  187 (405)
T ss_pred             ccc-CCeEEEEEecCCcEEEEecCCceeecc------CCCccccccccccccccC-CCCEEEEecCcceEEEEecchhee
Confidence            985 445555555555666666643221110      000000111122335777 779999999999999999988763


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCC-ccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (763)
                      ..                         .+... ...|..+.|+-. +..|+.-+.|..||.|+++.......-   ..+ 
T Consensus       188 va-------------------------s~rits~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~di~~~~r~---~e~-  237 (405)
T KOG1273|consen  188 VA-------------------------SFRITSVQAIKQIIVSRK-GRFLIINTSDRVIRTYEISDIDDEGRD---GEV-  237 (405)
T ss_pred             ee-------------------------eeeechheeeeEEEEecc-CcEEEEecCCceEEEEehhhhcccCcc---CCc-
Confidence            20                         00111 246778888875 789999999999999998843221100   000 


Q ss_pred             CcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCCccceEeec-CCCCeeeeeccCCCCcccC
Q 004290          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTLNGLELQ  339 (763)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~  339 (763)
                      +....+...      -...+..+++|+.+|.|+.+++. -..+|||....|.......+. |+..-.+.|+|....++..
T Consensus       238 e~~~K~qDv------VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si  311 (405)
T KOG1273|consen  238 EPEHKLQDV------VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI  311 (405)
T ss_pred             ChhHHHHHH------HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence            001111000      11124788999999999998886 678999999987644444443 3556667788865555444

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.75  E-value=1.5e-16  Score=148.41  Aligned_cols=215  Identities=20%  Similarity=0.248  Sum_probs=154.9

Q ss_pred             eeeccccCceEEEEeCC-CCCEEEEEeCC-------CcEEEEeCCCC---------eEEEEEccCCCCceEEEEEeeCCC
Q 004290           44 RELEGHQGCVNAISWNS-KGSLLISGSDD-------THINVWSYSSR---------KLLHSIETGHSANVFCTKFVPETS  106 (763)
Q Consensus        44 ~~l~gH~~~V~~l~fsp-~g~~Lasgs~D-------~~v~iWd~~~~---------~~~~~~~~~h~~~V~~v~~~p~~~  106 (763)
                      +.|.-|.+.|..++-+| +.++|+|+-.+       ..+-||.+...         +++..+...+-+.|.|+.|.|+  
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn--  134 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN--  134 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC--
Confidence            45667889999999999 55677777542       24779988642         3444454456679999999998  


Q ss_pred             CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEec-CCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004290          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (763)
Q Consensus       107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-~~~~~l~s~s~dg~i~iwd~~~~~~~~~  185 (763)
                      +..+++-. |..|.+|++..........    +...-.+|....++-+|+| -+++.+++. .|+++..||+|+.+..  
T Consensus       135 s~klasm~-dn~i~l~~l~ess~~vaev----~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~--  206 (370)
T KOG1007|consen  135 SDKLASMD-DNNIVLWSLDESSKIVAEV----LSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKN--  206 (370)
T ss_pred             CCeeEEec-cCceEEEEcccCcchheee----cccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhh--
Confidence            67887776 8899999999755422100    0111123667788889999 455666554 5799999999987632  


Q ss_pred             CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccc
Q 004290          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (763)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  265 (763)
                                            ......|...|..+.|+|....+|++++.||.|||||.|+-+.            .+.
T Consensus       207 ----------------------~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~------------pv~  252 (370)
T KOG1007|consen  207 ----------------------NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF------------PVQ  252 (370)
T ss_pred             ----------------------cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc------------ccc
Confidence                                  1112346667899999998888999999999999999997431            111


Q ss_pred             ccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCeEEEEECCC
Q 004290          266 YFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       266 ~~~~~~~~~~g~~~~~i~~v~~spd-g~~l~~~s~d~~i~iwd~~~  310 (763)
                      .+       .+|.. +|.+|.|.|. .++|++++.|..|.+|...+
T Consensus       253 el-------~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  253 EL-------PGHSH-WVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             cc-------CCCce-EEEEEEecCccceEEEecCCCceeEEEeccc
Confidence            11       44555 7999999995 46788889999999997765

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=1.3e-16  Score=172.50  Aligned_cols=221  Identities=16%  Similarity=0.265  Sum_probs=148.3

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccC--CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~  125 (763)
                      +..+.-..+.|+|-...++++...-.|+|||.+.++.+..|..+  ....|+.+.+..+.+..++++|+.||.|+||+--
T Consensus      1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            33445678889998888999887789999999999998877322  2357899999877657899999999999999865


Q ss_pred             CCC-CCCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290          126 RFS-GRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       126 ~~~-~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                      ... +....+..+..+... .+-.+.=.-+.|....+.++++ |.-..|+|||....+.+              .++.. 
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t-Gd~r~IRIWDa~~E~~~--------------~diP~- 1205 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT-GDVRSIRIWDAHKEQVV--------------ADIPY- 1205 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEec-CCeeEEEEEecccceeE--------------eeccc-
Confidence            432 111000011111111 1111222345787766655544 45789999999876533              22111 


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc-cce
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS-LHL  282 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~i  282 (763)
                               +....|+++.-+-.+++.|++|..||.||+||.|+-..-          ..+..+       +.|.. .+|
T Consensus      1206 ---------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------s~v~~~-------R~h~~~~~I 1259 (1387)
T KOG1517|consen 1206 ---------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------SLVCVY-------REHNDVEPI 1259 (1387)
T ss_pred             ---------CCCccceeecccccCCceEEEeecCCceEEeecccCCcc----------ccceee-------cccCCcccc
Confidence                     123456666666556899999999999999999975321          011111       12222 138


Q ss_pred             eEEEEcCCCC-EEEEEeCCCeEEEEECCC
Q 004290          283 THVTFSPNGE-EVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       283 ~~v~~spdg~-~l~~~s~d~~i~iwd~~~  310 (763)
                      ..+.+.+.|- .|++|+.||.|++||++.
T Consensus      1260 v~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1260 VHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             eeEEeecCCCcceeeeccCCeEEEEeccc
Confidence            9999998764 499999999999999998

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.74  E-value=1.2e-17  Score=166.65  Aligned_cols=221  Identities=12%  Similarity=0.145  Sum_probs=184.1

Q ss_pred             cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p  103 (763)
                      ++...++.||+....+.+.-.+|..-.-.+.+|+.+||.++.+++..||.|.|||+.+...++.| +||...+.||..++
T Consensus       483 GGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf-qGhtDGascIdis~  561 (705)
T KOG0639|consen  483 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISK  561 (705)
T ss_pred             ccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc-cCCCCCceeEEecC
Confidence            44567899999888888888888877778999999999999999999999999999999999999 89999999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (763)
Q Consensus       104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~  183 (763)
                      +  |..|-+|+-|.+||.||++++..          +... .....|.++..+| .+.+++.|-+++.+.+......+..
T Consensus       562 d--GtklWTGGlDntvRcWDlregrq----------lqqh-dF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~ky  627 (705)
T KOG0639|consen  562 D--GTKLWTGGLDNTVRCWDLREGRQ----------LQQH-DFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKY  627 (705)
T ss_pred             C--CceeecCCCccceeehhhhhhhh----------hhhh-hhhhhheecccCC-CccceeeecccCcEEEEecCCccce
Confidence            9  89999999999999999997321          2211 2357899999999 6689999999999988877665421


Q ss_pred             CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004290          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (763)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (763)
                                                ....|...|.++.|.+. |+++++.+.|+.+..|...-+..+...         
T Consensus       628 --------------------------qlhlheScVLSlKFa~c-GkwfvStGkDnlLnawrtPyGasiFqs---------  671 (705)
T KOG0639|consen  628 --------------------------QLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQS---------  671 (705)
T ss_pred             --------------------------eecccccEEEEEEeccc-CceeeecCchhhhhhccCccccceeec---------
Confidence                                      01135667899999997 799999999999999998877654322         


Q ss_pred             ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004290          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (763)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~  308 (763)
                                   .....|.++.+|.|.+||++|+.|....+|.+
T Consensus       672 -------------kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  672 -------------KESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             -------------cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence                         22235999999999999999999998888865

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.74  E-value=2.9e-17  Score=156.07  Aligned_cols=240  Identities=15%  Similarity=0.190  Sum_probs=164.7

Q ss_pred             cccCceEEEEeCCC----CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004290           48 GHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (763)
Q Consensus        48 gH~~~V~~l~fsp~----g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd  123 (763)
                      .|......++|+-+    ..+||.|+.-|.|+|.|+.++++...+ .+|...|+.+.|+|.. .++++++|.|..|++|+
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~-~qlvls~SkD~svRlwn  164 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWN  164 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCC-CcEEEEecCCceEEEEe
Confidence            37788888999753    358999999999999999999999888 8999999999999985 78999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC-----CCCCcccceEEE
Q 004290          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA-----GSSHQECRNILL  198 (763)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~  198 (763)
                      +++....+       ...-..+|.+.|.++.|++ ++.+|+++|.|.+|++|++...+....+     ......... +-
T Consensus       165 I~~~~Cv~-------VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p-fp  235 (385)
T KOG1034|consen  165 IQTDVCVA-------VFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP-FP  235 (385)
T ss_pred             ccCCeEEE-------EecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCc-CC
Confidence            99743211       1344578999999999999 5679999999999999999855422000     000000000 00


Q ss_pred             ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC-CCCCCcccCCCCCCCC-cccccccccccCCC
Q 004290          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPP-CVNYFCPMHLSEHG  276 (763)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g  276 (763)
                      . ..-+.....+...|...|.|+.|-   ++++++-+-++.|..|..- ..+.+...    .|++ +...+...     .
T Consensus       236 t-~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~v----kp~es~~Ti~~~~-----~  302 (385)
T KOG1034|consen  236 T-PKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNV----KPPESATTILGEF-----D  302 (385)
T ss_pred             c-cccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhcc----CCCccceeeeeEe-----c
Confidence            0 000000111334577788888886   4689999999999999883 32222211    1111 11111000     1


Q ss_pred             CCccceeEEE--EcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          277 RSSLHLTHVT--FSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       277 ~~~~~i~~v~--~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .....|+-+.  |.|-+++|+.|...|.|++||+...
T Consensus       303 ~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~  339 (385)
T KOG1034|consen  303 YPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN  339 (385)
T ss_pred             cCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence            1122355554  5577899999999999999999884

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=6.5e-15  Score=157.89  Aligned_cols=239  Identities=19%  Similarity=0.253  Sum_probs=182.5

Q ss_pred             cccccccchhhhhccccceeeccccCceEEEEeCCCC---CEEEEEeCCCcEEEEeCCCCeEEEEEc-------------
Q 004290           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG---SLLISGSDDTHINVWSYSSRKLLHSIE-------------   89 (763)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g---~~Lasgs~D~~v~iWd~~~~~~~~~~~-------------   89 (763)
                      +...++++.  ..+..+++.|.+|..+++.+.+.|..   .++.+++.||.|++||...+..++++.             
T Consensus        35 ~~~~V~VyS--~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~  112 (792)
T KOG1963|consen   35 TGNFVKVYS--TATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPA  112 (792)
T ss_pred             eCCEEEEEe--cchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechh
Confidence            345677766  66778888999999999999998854   467799999999999988776655542             


Q ss_pred             --------------------------------------------------------------------------------
Q 004290           90 --------------------------------------------------------------------------------   89 (763)
Q Consensus        90 --------------------------------------------------------------------------------   89 (763)
                                                                                                      
T Consensus       113 ~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~  192 (792)
T KOG1963|consen  113 QADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHT  192 (792)
T ss_pred             HhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccc
Confidence                                                                                            


Q ss_pred             ---------cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC
Q 004290           90 ---------TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP  160 (763)
Q Consensus        90 ---------~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  160 (763)
                               ..|...+++.+++|+  ++++++|..||.|.+|.--..+..      ......+.-|...|++++|++ ++
T Consensus       193 ~~~~~~~~~~~Htf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~~~~~------~~t~t~lHWH~~~V~~L~fS~-~G  263 (792)
T KOG1963|consen  193 KHTSSRDITVHHTFNITCVALSPN--ERYLAAGDSDGRILVWRDFGSSDD------SETCTLLHWHHDEVNSLSFSS-DG  263 (792)
T ss_pred             eeeccchhhhhhcccceeEEeccc--cceEEEeccCCcEEEEeccccccc------cccceEEEecccccceeEEec-CC
Confidence                     245666889999999  799999999999999975531111      123566778999999999999 66


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004290          161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (763)
Q Consensus       161 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i  240 (763)
                      .+|+|||..|.+.+|-+.+++..                          ..|.-..+|..+.++|+ +.+.++...|+.|
T Consensus       264 ~~LlSGG~E~VLv~Wq~~T~~kq--------------------------fLPRLgs~I~~i~vS~d-s~~~sl~~~DNqI  316 (792)
T KOG1963|consen  264 AYLLSGGREGVLVLWQLETGKKQ--------------------------FLPRLGSPILHIVVSPD-SDLYSLVLEDNQI  316 (792)
T ss_pred             ceEeecccceEEEEEeecCCCcc--------------------------cccccCCeeEEEEEcCC-CCeEEEEecCceE
Confidence            88999999999999999988621                          22344678999999997 7899999999999


Q ss_pred             EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      .+-.+.+.....++.....+....         ..+..+ -.+.++++|.-+.++-.+..+.|-+||+.+..
T Consensus       317 ~li~~~dl~~k~tIsgi~~~~~~~---------k~~~~~-l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~  378 (792)
T KOG1963|consen  317 HLIKASDLEIKSTISGIKPPTPST---------KTRPQS-LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS  378 (792)
T ss_pred             EEEeccchhhhhhccCccCCCccc---------cccccc-cceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence            999887766544443222211110         011222 37889999977788999999999999998854

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=4.2e-17  Score=165.83  Aligned_cols=140  Identities=21%  Similarity=0.302  Sum_probs=107.8

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      ..|...|..+.|.|.  ...|++++.|++|++|++..  .........+++.+|.+|.++|.|+++.+ ++..+++|+.|
T Consensus       291 ~s~~d~ir~l~~~~s--ep~lit~sed~~lk~WnLqk--~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~D  365 (577)
T KOG0642|consen  291 RSHDDCIRALAFHPS--EPVLITASEDGTLKLWNLQK--AKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGID  365 (577)
T ss_pred             ecchhhhhhhhcCCC--CCeEEEeccccchhhhhhcc--cCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccC
Confidence            568889999999998  68999999999999999943  22223334578999999999999999988 77899999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      |+|+.|++....-. .-.          ++    .........+|+..|+.+++++. .+.|++++.||++|+|+.....
T Consensus       366 g~I~~w~~p~n~dp-~ds----------~d----p~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~~~~~~  429 (577)
T KOG0642|consen  366 GTIRCWNLPPNQDP-DDS----------YD----PSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWEPTEES  429 (577)
T ss_pred             ceeeeeccCCCCCc-ccc----------cC----cchhccceeccccceeeeeeccc-ccceeeecCCceEEeeccCCcC
Confidence            99999988732211 000          00    00111233478899999999997 5789999999999999987655


Q ss_pred             C
Q 004290          250 P  250 (763)
Q Consensus       250 ~  250 (763)
                      +
T Consensus       430 ~  430 (577)
T KOG0642|consen  430 P  430 (577)
T ss_pred             c
Confidence            3

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.74  E-value=7.9e-15  Score=160.09  Aligned_cols=208  Identities=28%  Similarity=0.438  Sum_probs=156.0

Q ss_pred             eeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEccC-CCCceEEEEE-eeCCCCc-EEEEEeC-CCcE
Q 004290           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETG-HSANVFCTKF-VPETSDE-LVVSGAG-DAEV  119 (763)
Q Consensus        45 ~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~~~~~~-h~~~V~~v~~-~p~~~~~-~l~s~s~-dg~I  119 (763)
                      .+.+|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+ .+ +...+..+.+ .++  +. .++..+. |+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL-EGLHDSSVSKLALSSPD--GNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEE-eccCCCceeeEEEECCC--cceEEeccCCCCccE
Confidence            567899999999999999999999999999999999886 66666 34 3347778877 666  45 5555444 9999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  198 (763)
                      .+|+....         ......+..|...|..++|+|+ +.++++++. |+.+++|++.....                
T Consensus       137 ~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------  190 (466)
T COG2319         137 KLWDLSTP---------GKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRTGKP----------------  190 (466)
T ss_pred             EEEEecCC---------CeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCCCce----------------
Confidence            99999851         1336778889999999999994 457777775 99999999987431                


Q ss_pred             ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (763)
                               +.....|...|.+++|+|++..++++++.|+.|++||...+..+..                   ...+|.
T Consensus       191 ---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~-------------------~~~~~~  242 (466)
T COG2319         191 ---------LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS-------------------TLSGHS  242 (466)
T ss_pred             ---------EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee-------------------ecCCCC
Confidence                     1112236788999999987432555559999999998875433221                   012343


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .. . ...|+|++.++++++.|+.+++|++...
T Consensus       243 ~~-~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~  273 (466)
T COG2319         243 DS-V-VSSFSPDGSLLASGSSDGTIRLWDLRSS  273 (466)
T ss_pred             cc-e-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence            32 2 2289999988899999999999999874

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.73  E-value=7.9e-17  Score=159.60  Aligned_cols=261  Identities=16%  Similarity=0.167  Sum_probs=184.4

Q ss_pred             ccccccchhh--hhccccceeeccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCeE--EEEEccCCCCceEEEEE
Q 004290           27 NHSLQMHSSL--VRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKF  101 (763)
Q Consensus        27 ~~~~~~~~~~--~~~~~~~~~l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~~--~~~~~~~h~~~V~~v~~  101 (763)
                      -.+|-+|+.-  .+...-+..+..|.++|.+|.|+|. -..+.+.|+||+|++-|+++...  +... ..-...+.++.|
T Consensus       209 ~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-~~d~~~fs~~d~  287 (498)
T KOG4328|consen  209 GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL-DTDNIWFSSLDF  287 (498)
T ss_pred             CCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhc-Cccceeeeeccc
Confidence            3566667642  3445667788999999999999994 46788999999999999987643  2222 123445678888


Q ss_pred             eeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (763)
Q Consensus       102 ~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~  181 (763)
                      +.+  ...++.+..=|...+||.+.....         ...+.-|...|++|+++|..+.+|+|+|.|++++|||+|.-.
T Consensus       288 ~~e--~~~vl~~~~~G~f~~iD~R~~~s~---------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~  356 (498)
T KOG4328|consen  288 SAE--SRSVLFGDNVGNFNVIDLRTDGSE---------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR  356 (498)
T ss_pred             cCC--CccEEEeecccceEEEEeecCCcc---------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhc
Confidence            888  466677776679999999985422         344566888999999999999999999999999999999864


Q ss_pred             CCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC----CCCCCcccCCC
Q 004290          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR----MLPPLTSCQKR  257 (763)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~----~~~~~~~~~~~  257 (763)
                      ....                     .+.....|...|.+..|+|.++. |++.+.|..|||||..    ...+..++.  
T Consensus       357 ~K~s---------------------p~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~--  412 (498)
T KOG4328|consen  357 GKAS---------------------PFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIP--  412 (498)
T ss_pred             CCCC---------------------cceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceee--
Confidence            2210                     12233457889999999999765 9999999999999984    222222211  


Q ss_pred             CCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeec--CCCCeeeeeccCCCC
Q 004290          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV--GDASKIMSFTPTLNG  335 (763)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~p~~~~  335 (763)
                                   |-...|..- ......|.|+..++++|-.-..|-|||-..+........+  ........|+|....
T Consensus       413 -------------Hn~~t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~  478 (498)
T KOG4328|consen  413 -------------HNNRTGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDT  478 (498)
T ss_pred             -------------ccCcccccc-cchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccc
Confidence                         111111111 2455689999999999988888999998885422222222  233456778886554


Q ss_pred             cc
Q 004290          336 LE  337 (763)
Q Consensus       336 ~~  337 (763)
                      +.
T Consensus       479 ~~  480 (498)
T KOG4328|consen  479 LA  480 (498)
T ss_pred             ee
Confidence            43

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.71  E-value=1.9e-15  Score=166.32  Aligned_cols=226  Identities=18%  Similarity=0.175  Sum_probs=156.2

Q ss_pred             hhccccceeeccccCceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCC-------eEEEEEccCCCCceEEEEEeeCCCCc
Q 004290           37 VRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPETSDE  108 (763)
Q Consensus        37 ~~~~~~~~~l~gH~~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~-------~~~~~~~~~h~~~V~~v~~~p~~~~~  108 (763)
                      .-++.++..|..|...|..++.++.. .+++|||.||+|++||...-       +...++ ......+.++.+.+.  ++
T Consensus      1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~--~~ 1111 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGN--GD 1111 (1431)
T ss_pred             CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccC--CC
Confidence            34567788899999999999998754 99999999999999998631       223333 235678999999998  79


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeec-ccCceeEE-EEecCCCC-EEEEEeCCCcEEEEECCCCCCCCC
Q 004290          109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKL-AVEVGNPH-VVWSASEDGTLRQHDFRQGSSCPP  185 (763)
Q Consensus       109 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l-~~sp~~~~-~l~s~s~dg~i~iwd~~~~~~~~~  185 (763)
                      .+|.++.||.|++.++.........   ......... ..+.+.+| +|...... .++.+..-+.|..||++.....  
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~---~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-- 1186 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRV---ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-- 1186 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccce---eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH--
Confidence            9999999999999999863211100   011111111 12334443 55544444 7778888899999999986522  


Q ss_pred             CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccc
Q 004290          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (763)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  265 (763)
                                  |         ....+...+.|++++.+|. ++++++|+..|.+.+||+|=+.++....          
T Consensus      1187 ------------w---------~lk~~~~hG~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~~i~sw~---------- 1234 (1431)
T KOG1240|consen 1187 ------------W---------RLKNQLRHGLVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRVPILSWE---------- 1234 (1431)
T ss_pred             ------------H---------hhhcCccccceeEEEecCC-ceEEEEecCCceEEEEEeecCceeeccc----------
Confidence                        1         1111234568999999997 6899999999999999999765544332          


Q ss_pred             ccccccccCCCCCccceeEEEEcCC---CCEEEEEe--CCCeEEEEECCCCC
Q 004290          266 YFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSY--SGEHVYLMDVNHAG  312 (763)
Q Consensus       266 ~~~~~~~~~~g~~~~~i~~v~~spd---g~~l~~~s--~d~~i~iwd~~~~~  312 (763)
                               +++. .+|+.|..+|-   ....++++  ..+.|.+|++.++.
T Consensus      1235 ---------~P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1235 ---------HPAR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             ---------Cccc-CCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence                     1222 25777777763   34444444  47899999999964

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=2.4e-16  Score=150.75  Aligned_cols=250  Identities=16%  Similarity=0.180  Sum_probs=177.7

Q ss_pred             ccccccchhhhhccccceeeccccCceEEEEeCC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEc-cCCC-CceEEEEEe
Q 004290           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHS-ANVFCTKFV  102 (763)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp--~g~~Lasgs~D~~v~iWd~~~~~~~~~~~-~~h~-~~V~~v~~~  102 (763)
                      +..+++++.  .+.+.+.++++|...++.++|..  .+..+.+|+.||+|++||++.......+. ..+. .+..|++..
T Consensus        49 ngsv~lyd~--~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n  126 (376)
T KOG1188|consen   49 NGSVRLYDK--GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN  126 (376)
T ss_pred             CCeEEEEec--cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeecc
Confidence            567888873  44788999999999999999987  46788999999999999999876554442 3344 355566665


Q ss_pred             eCCCCcEEEEEeC----CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004290          103 PETSDELVVSGAG----DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (763)
Q Consensus       103 p~~~~~~l~s~s~----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~  178 (763)
                      -.  ++++++|..    +-.|.+||++..+..        .-.-...|.+.|++|.|+|.++++|+||+.||.|.+||+.
T Consensus       127 ck--~~ii~~GtE~~~s~A~v~lwDvR~~qq~--------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  127 CK--KNIIACGTELTRSDASVVLWDVRSEQQL--------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             Cc--CCeEEeccccccCceEEEEEEeccccch--------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence            45  678888764    677999999974310        1234568999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCC
Q 004290          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM  258 (763)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~  258 (763)
                      ....-        +              .+...-.+...|.++.|....-+.|.+-+...+..+|++..+.....+..+.
T Consensus       197 ~d~Ee--------D--------------aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~  254 (376)
T KOG1188|consen  197 KDNEE--------D--------------ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPD  254 (376)
T ss_pred             CCcch--------h--------------hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCcc
Confidence            75311        0              1111123456788999998755679999999999999999887555444331


Q ss_pred             C-------------------C---------CCc---cccc-----cccc-----ccCCCCCccceeEEEEcCCCCEEEEE
Q 004290          259 S-------------------P---------PPC---VNYF-----CPMH-----LSEHGRSSLHLTHVTFSPNGEEVLLS  297 (763)
Q Consensus       259 ~-------------------~---------~~~---~~~~-----~~~~-----~~~~g~~~~~i~~v~~spdg~~l~~~  297 (763)
                      .                   |         ..+   ...|     ++..     ...+|+...-|+++.|...+.++++|
T Consensus       255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TG  334 (376)
T KOG1188|consen  255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTG  334 (376)
T ss_pred             chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeecc
Confidence            1                   0         000   0000     0000     01133333358888888889999999


Q ss_pred             eCCCeEEEEECCC
Q 004290          298 YSGEHVYLMDVNH  310 (763)
Q Consensus       298 s~d~~i~iwd~~~  310 (763)
                      +.||.+.+|....
T Consensus       335 GEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  335 GEDGLLQAWKVED  347 (376)
T ss_pred             CCCceEEEEecCC
Confidence            9999999998643

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=5.1e-16  Score=158.48  Aligned_cols=187  Identities=14%  Similarity=0.127  Sum_probs=124.1

Q ss_pred             EccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe
Q 004290           88 IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  167 (763)
Q Consensus        88 ~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s  167 (763)
                      ++.+|++.|.++...|.  |..|++|+.||+|+||.+.++          .++..+. ..+.|.||+|+|.....++.+.
T Consensus       395 vyrGHtg~Vr~iSvdp~--G~wlasGsdDGtvriWEi~Tg----------Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA  461 (733)
T KOG0650|consen  395 VYRGHTGLVRSISVDPS--GEWLASGSDDGTVRIWEIATG----------RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA  461 (733)
T ss_pred             eEeccCCeEEEEEecCC--cceeeecCCCCcEEEEEeecc----------eEEEEEe-ecceeEEEEecCCCCceeEEEE
Confidence            34799999999999998  899999999999999999983          3466664 5668999999996655555566


Q ss_pred             CCCcEEEEECCCCCCCCC------CCC----CCcccceEEEecCC--CceeeccCCCCCccceEEEEEeCCCCcEEEEEe
Q 004290          168 EDGTLRQHDFRQGSSCPP------AGS----SHQECRNILLDLRC--GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG  235 (763)
Q Consensus       168 ~dg~i~iwd~~~~~~~~~------~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs  235 (763)
                      ....+.|-+..-+..+..      ...    .........|.-..  .....++....|...|+.+.|+.. |.||++..
T Consensus       462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV~  540 (733)
T KOG0650|consen  462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATVM  540 (733)
T ss_pred             ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEec
Confidence            666677776554432200      000    00111122222110  001112233346678999999996 79999987


Q ss_pred             CC---CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          236 SD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       236 ~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      .+   ..|.|.++.......-|                     ....+.|.++.|+|...+|++++. ..|+|||+..
T Consensus       541 ~~~~~~~VliHQLSK~~sQ~PF---------------------~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~k  596 (733)
T KOG0650|consen  541 PDSGNKSVLIHQLSKRKSQSPF---------------------RKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSK  596 (733)
T ss_pred             cCCCcceEEEEecccccccCch---------------------hhcCCceeEEEecCCCceEEEEec-cceEEEehhH
Confidence            64   46888888764322111                     012225999999999999888875 5789998876

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.71  E-value=5.4e-14  Score=153.51  Aligned_cols=228  Identities=27%  Similarity=0.423  Sum_probs=167.0

Q ss_pred             cccccccchhhhhccccceeecccc-CceEEEEe-CCCCC-EEEEEeC-CCcEEEEeCCC-CeEEEEEccCCCCceEEEE
Q 004290           26 VNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISW-NSKGS-LLISGSD-DTHINVWSYSS-RKLLHSIETGHSANVFCTK  100 (763)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~gH~-~~V~~l~f-sp~g~-~Lasgs~-D~~v~iWd~~~-~~~~~~~~~~h~~~V~~v~  100 (763)
                      .+..+.+|+..... .....+.++. ..+..+.+ ++++. +++..+. |+.+.+||... ......+ ..|...|.+++
T Consensus        85 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~  162 (466)
T COG2319          85 SDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLA  162 (466)
T ss_pred             CCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE-ecCcccEEEEE
Confidence            45666777633333 3556666644 37888888 88887 5555444 99999999998 6667777 78999999999


Q ss_pred             EeeCCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290          101 FVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (763)
Q Consensus       101 ~~p~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~  179 (763)
                      |+|+  +..+++++. |+.+++|++...          ..+..+.+|...|.+++|+|++..++++++.|+.|++||...
T Consensus       163 ~~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~  230 (466)
T COG2319         163 FSPD--GKLLASGSSLDGTIKLWDLRTG----------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST  230 (466)
T ss_pred             ECCC--CCEEEecCCCCCceEEEEcCCC----------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence            9999  678888885 999999999862          346777789999999999985543666669999999998774


Q ss_pred             CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004290          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (763)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~  259 (763)
                      +.....                        ....|.... -..|+|++ .++++++.|+.+++||.+.....        
T Consensus       231 ~~~~~~------------------------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~--------  276 (466)
T COG2319         231 GKLLRS------------------------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL--------  276 (466)
T ss_pred             CcEEee------------------------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE--------
Confidence            432100                        112233332 22799974 78889999999999999975430        


Q ss_pred             CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCc
Q 004290          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG  313 (763)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~  313 (763)
                          ...+       .+|.. .|.++.|.|++..+++++.|+.+.+|+..+...
T Consensus       277 ----~~~~-------~~~~~-~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  318 (466)
T COG2319         277 ----LRTL-------SGHSS-SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL  318 (466)
T ss_pred             ----EEEE-------ecCCc-cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence                1111       22323 699999999999999988899999998887553

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.68  E-value=9.4e-16  Score=149.17  Aligned_cols=177  Identities=20%  Similarity=0.233  Sum_probs=142.2

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      .||+++|..++|+|.+ +..|||||.|.+|.||.+.....   ...-.+++..+.+|...|-.|+|+|.-.+.|+|++.|
T Consensus        78 ~GHt~~vLDi~w~Pfn-D~vIASgSeD~~v~vW~IPe~~l---~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFN-DCVIASGSEDTKVMVWQIPENGL---TRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             cCccccccccccCccC-CceeecCCCCceEEEEECCCccc---ccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            6999999999999986 88999999999999999975321   1122367889999999999999999888999999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      .+|.+||+.+++..                         .. ..|..-|+++.|+.+ |.+|++.+.|..|||||.++++
T Consensus       154 n~v~iWnv~tgeal-------------------------i~-l~hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~  206 (472)
T KOG0303|consen  154 NTVSIWNVGTGEAL-------------------------IT-LDHPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGT  206 (472)
T ss_pred             ceEEEEeccCCcee-------------------------ee-cCCCCeEEEEEeccC-CceeeeecccceeEEEcCCCCc
Confidence            99999999998732                         11 127788999999997 7899999999999999999987


Q ss_pred             CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCeEEEEECCCCCccceE
Q 004290          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMR  317 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~---d~~i~iwd~~~~~~~~~~  317 (763)
                      .+..-                    .+|.+..-..+.|-.+|..+-+|-.   +..+-+||..+-..+...
T Consensus       207 ~v~e~--------------------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~  257 (472)
T KOG0303|consen  207 VVSEG--------------------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIAL  257 (472)
T ss_pred             Eeeec--------------------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCccee
Confidence            65332                    2355545667789899995545533   789999999886655433

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.68  E-value=4.8e-14  Score=151.51  Aligned_cols=205  Identities=19%  Similarity=0.159  Sum_probs=136.4

Q ss_pred             CcEEEEeCCCCe-EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCce
Q 004290           72 THINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV  150 (763)
Q Consensus        72 ~~v~iWd~~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v  150 (763)
                      +.+.||++.... .-..+  .-...|.|++|+|.. ..+++.|..+|.|.+||++.+.....    .........|..++
T Consensus       222 ~~~~vW~~~~p~~Pe~~~--~~~s~v~~~~f~p~~-p~ll~gG~y~GqV~lWD~~~~~~~~~----s~ls~~~~sh~~~v  294 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVL--ESPSEVTCLKFCPFD-PNLLAGGCYNGQVVLWDLRKGSDTPP----SGLSALEVSHSEPV  294 (555)
T ss_pred             ceEEEEecCCCCCceEEE--ecCCceeEEEeccCC-cceEEeeccCceEEEEEccCCCCCCC----cccccccccCCcCe
Confidence            468999998763 23333  456789999999986 88999999999999999997553211    11122334689999


Q ss_pred             eEEEEecCCC-CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCc
Q 004290          151 KKLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH  229 (763)
Q Consensus       151 ~~l~~sp~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  229 (763)
                      ..+.|..... .-|++++.||.|..|+++.-..+.......         ...    ...........+++++|.+.+++
T Consensus       295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~---------~~~----~~~~~~~~~~~~t~~~F~~~~p~  361 (555)
T KOG1587|consen  295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLE---------SKK----HKGQQSSKAVGATSLKFEPTDPN  361 (555)
T ss_pred             EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccc---------ccc----ccccccccccceeeEeeccCCCc
Confidence            9999976221 347899999999999888765432111100         000    00001123457899999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004290          230 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (763)
Q Consensus       230 ~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~  309 (763)
                      .|++|+.+|.|.-=+....+.-..           ..+ ..+.....|.+ +|+++.++|=+..++.++.|-+|+||.-.
T Consensus       362 ~FiVGTe~G~v~~~~r~g~~~~~~-----------~~~-~~~~~~~~h~g-~v~~v~~nPF~~k~fls~gDW~vriWs~~  428 (555)
T KOG1587|consen  362 HFIVGTEEGKVYKGCRKGYTPAPE-----------VSY-KGHSTFITHIG-PVYAVSRNPFYPKNFLSVGDWTVRIWSED  428 (555)
T ss_pred             eEEEEcCCcEEEEEeccCCccccc-----------ccc-cccccccccCc-ceEeeecCCCccceeeeeccceeEecccc
Confidence            999999999988744443321110           000 11111122434 69999999988877777779999999765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.67  E-value=9.1e-14  Score=146.26  Aligned_cols=195  Identities=14%  Similarity=0.159  Sum_probs=120.5

Q ss_pred             EEEEeCCCcEEEEeCCC-Ce--EEEEEccCCCCceEEEEEeeCCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290           65 LISGSDDTHINVWSYSS-RK--LLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPS  140 (763)
Q Consensus        65 Lasgs~D~~v~iWd~~~-~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (763)
                      +++...|+.|.+||+.+ ++  .+..+  .+.+....++++|+  +++|++++ .++.|.+|++.. .+..      ...
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~spd--~~~lyv~~~~~~~i~~~~~~~-~g~l------~~~   73 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISPD--KRHLYVGVRPEFRVLSYRIAD-DGAL------TFA   73 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECCC--CCEEEEEECCCCcEEEEEECC-CCce------EEe
Confidence            34457789999999964 33  44444  23456788999999  67776654 588999999972 2211      112


Q ss_pred             eeeecccCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceE
Q 004290          141 ALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK  219 (763)
Q Consensus       141 ~~~~~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (763)
                      .... ..+....|+|+|++ +++++++ .++.|.+|++.+......          .           +...+ +.....
T Consensus        74 ~~~~-~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~----------~-----------~~~~~-~~~~~~  129 (330)
T PRK11028         74 AESP-LPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVA----------P-----------IQIIE-GLEGCH  129 (330)
T ss_pred             eeec-CCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCC----------c-----------eeecc-CCCccc
Confidence            2221 23456789999954 5555554 589999999964321100          0           00000 112356


Q ss_pred             EEEEeCCCCcEE-EEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 004290          220 SCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY  298 (763)
Q Consensus       220 ~i~~~p~~~~~l-~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s  298 (763)
                      .++++|+ ++++ ++...++.|.+||+.+...+.....        ..   ... ..|   .....++|+|+|++|+++.
T Consensus       130 ~~~~~p~-g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~--------~~---~~~-~~g---~~p~~~~~~pdg~~lyv~~  193 (330)
T PRK11028        130 SANIDPD-NRTLWVPCLKEDRIRLFTLSDDGHLVAQEP--------AE---VTT-VEG---AGPRHMVFHPNQQYAYCVN  193 (330)
T ss_pred             EeEeCCC-CCEEEEeeCCCCEEEEEEECCCCcccccCC--------Cc---eec-CCC---CCCceEEECCCCCEEEEEe
Confidence            7889997 4555 5555679999999986322210000        00   000 001   1256789999999998887


Q ss_pred             C-CCeEEEEECCC
Q 004290          299 S-GEHVYLMDVNH  310 (763)
Q Consensus       299 ~-d~~i~iwd~~~  310 (763)
                      . ++.|.+|+++.
T Consensus       194 ~~~~~v~v~~~~~  206 (330)
T PRK11028        194 ELNSSVDVWQLKD  206 (330)
T ss_pred             cCCCEEEEEEEeC
Confidence            7 99999999975

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.67  E-value=2.7e-15  Score=140.40  Aligned_cols=205  Identities=15%  Similarity=0.240  Sum_probs=154.8

Q ss_pred             cccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeE--EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290           48 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (763)
Q Consensus        48 gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~  124 (763)
                      .+..++++..|+. +-++|.++|-|-+..|||++++..  +++-+..|...|+.++|...+ -+.|++++.||.||+||+
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFDL  226 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-cceEEEecCCCcEEEEEe
Confidence            4567899999987 678999999999999999999733  444446899999999999965 789999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-cEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                      +......       .+..-..-..+...++|++.++++++|-..|. .|.|.|+|....                     
T Consensus       227 R~leHST-------IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t---------------------  278 (364)
T KOG0290|consen  227 RSLEHST-------IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT---------------------  278 (364)
T ss_pred             cccccce-------EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc---------------------
Confidence            9743211       11111222567889999999999999987764 699999998753                     


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  283 (763)
                         .+....+|...|+.|+|.|..+..|++++.|..+-|||+...-.-     .... +.+.         ... +..|+
T Consensus       279 ---pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~-----~~~d-Pila---------y~a-~~EVN  339 (364)
T KOG0290|consen  279 ---PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-----NGED-PILA---------YTA-GGEVN  339 (364)
T ss_pred             ---ceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc-----CCCC-chhh---------hhc-cceee
Confidence               355566789999999999998999999999999999999864210     0000 0000         111 12499


Q ss_pred             EEEEcC-CCCEEEEEeCC
Q 004290          284 HVTFSP-NGEEVLLSYSG  300 (763)
Q Consensus       284 ~v~~sp-dg~~l~~~s~d  300 (763)
                      .+.|++ .+.+|+.+...
T Consensus       340 qi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  340 QIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             eeeecccCCCEEEEEecC
Confidence            999996 56777776653

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.65  E-value=3.7e-15  Score=145.86  Aligned_cols=257  Identities=20%  Similarity=0.283  Sum_probs=174.5

Q ss_pred             CCCcccccccccchhhhh-------ccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC--------C----
Q 004290           21 DTRPDVNHSLQMHSSLVR-------RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--------S----   81 (763)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~-------~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~--------~----   81 (763)
                      ..++..++.+++|.....       +++....|..|+..|+++.|+|+|++||||+.+|.|.+|...        +    
T Consensus        29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~  108 (434)
T KOG1009|consen   29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADL  108 (434)
T ss_pred             eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhh
Confidence            345677889999974332       345566788999999999999999999999999999999765        2    


Q ss_pred             -C--eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC
Q 004290           82 -R--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG  158 (763)
Q Consensus        82 -~--~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  158 (763)
                       .  -.+.....+|...|..++|+|+  +.++++++.|..+++||+..+          .....+..|...+..++|.| 
T Consensus       109 ~ke~w~v~k~lr~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G----------~l~~~~~dh~~yvqgvawDp-  175 (434)
T KOG1009|consen  109 NKEKWVVKKVLRGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAG----------QLLAILDDHEHYVQGVAWDP-  175 (434)
T ss_pred             CccceEEEEEecccccchhhhhccCC--CceeeeeeccceEEEEEeccc----------eeEeeccccccccceeecch-
Confidence             1  1333444789999999999999  799999999999999999974          34677889999999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCC--------CCCcc-----------------------c--------------
Q 004290          159 NPHVVWSASEDGTLRQHDFRQGSSCPPAG--------SSHQE-----------------------C--------------  193 (763)
Q Consensus       159 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~~-----------------------~--------------  193 (763)
                      -..++++-+.|...+.+.+...+......        ..+.+                       .              
T Consensus       176 l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g  255 (434)
T KOG1009|consen  176 LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVG  255 (434)
T ss_pred             hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeC
Confidence            55888888888877777665543220000        00000                       0              


Q ss_pred             ----ceEEEec-CCCceeeccCCCCCccceEEEEEeCC-----------------CCcEEEEEeCCCcEEEEeCCCCCCC
Q 004290          194 ----RNILLDL-RCGAKRSLADPPKQTLSLKSCDISST-----------------RPHLLLVGGSDAFARLYDRRMLPPL  251 (763)
Q Consensus       194 ----~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~~p~-----------------~~~~l~sgs~Dg~i~iwd~~~~~~~  251 (763)
                          .+.-+.+ +..-.+.+...+.-..++..+.|+|-                 ....+|+++ ...|.+||.++..++
T Consensus       256 ~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~  334 (434)
T KOG1009|consen  256 GGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPL  334 (434)
T ss_pred             CceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccce
Confidence                0000000 00111122222333334444454442                 012345554 457899999876544


Q ss_pred             cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ....                   .-|-. .|+.++|++||..|+.++.||...+-.+...
T Consensus       335 ~~v~-------------------nihy~-~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  335 AVVD-------------------NIHYS-AITDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             EEEe-------------------eeeee-eecceeecCCCcEEEEeccCCceEEEEEcch
Confidence            3221                   11222 5999999999999999999998887766653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.65  E-value=3.1e-14  Score=152.94  Aligned_cols=238  Identities=16%  Similarity=0.178  Sum_probs=163.2

Q ss_pred             ccccchhhhhccccceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeE-----EEEEccCCCCceEEEEEe
Q 004290           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFV  102 (763)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~-----~~~~~~~h~~~V~~v~~~  102 (763)
                      .+.+|+.--. ..+...+.. ...|+|++|+| +..+||.|..+|+|.+||+..+..     +......|..+|+.+.|.
T Consensus       223 ~~~vW~~~~p-~~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  223 VLLVWSLKNP-NTPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             eEEEEecCCC-CCceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            4555652222 455555553 56799999999 668899999999999999987654     223335799999999999


Q ss_pred             eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee------cccCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004290          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (763)
Q Consensus       103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd  176 (763)
                      .+..+.-|++++.||.|..|+++.......    ..+.....      .-...+++++|.|.++..|+.|+++|.|.--+
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e----~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~  376 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVE----GLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGC  376 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchh----hcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEe
Confidence            874345699999999999998875332110    00011111      12346899999999999999999999998744


Q ss_pred             CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC-CCCCCcccC
Q 004290          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQ  255 (763)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~-~~~~~~~~~  255 (763)
                      ....+...          ...       ...+..+..|.++|+++.++|-....|++++ |.+++||... ...++..+.
T Consensus       377 r~g~~~~~----------~~~-------~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~  438 (555)
T KOG1587|consen  377 RKGYTPAP----------EVS-------YKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLD  438 (555)
T ss_pred             ccCCcccc----------ccc-------ccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhh
Confidence            33332110          000       0123344567889999999998776777776 9999999877 433332221


Q ss_pred             CCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEE-EeCCCeEEEEECCCC
Q 004290          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL-SYSGEHVYLMDVNHA  311 (763)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~-~s~d~~i~iwd~~~~  311 (763)
                                          .+.. .|++++|||.-.-+++ +..||.|.+||+...
T Consensus       439 --------------------~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  439 --------------------SSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             --------------------hccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence                                1222 4999999998765554 555999999999873

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.64  E-value=5.1e-16  Score=163.99  Aligned_cols=157  Identities=20%  Similarity=0.323  Sum_probs=118.7

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      .+|...|+|+.|...  |.++++|+.|..|+||...+.          .++....||.+.|+.++.+. +..++++++.|
T Consensus       187 lgH~naVyca~fDrt--g~~Iitgsdd~lvKiwS~et~----------~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D  253 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRT--GRYIITGSDDRLVKIWSMETA----------RCLASCRGHSGDITDLAVSS-NNTMIAAASND  253 (1113)
T ss_pred             Hhhhhheeeeeeccc--cceEeecCccceeeeeeccch----------hhhccCCCCccccchhccch-hhhhhhhcccC
Confidence            589999999999998  899999999999999998762          45788999999999999987 55789999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      ..|++|-+..+.+                         +....+|++.|++|+|+|..     +.+.||++++||.+ ..
T Consensus       254 ~vIrvWrl~~~~p-------------------------vsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r-~~  302 (1113)
T KOG0644|consen  254 KVIRVWRLPDGAP-------------------------VSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR-LE  302 (1113)
T ss_pred             ceEEEEecCCCch-------------------------HHHHhccccceeeeccCccc-----cCCCCCceEecccc-cc
Confidence            9999999998763                         33445789999999999962     67899999999998 22


Q ss_pred             CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004290          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM  306 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iw  306 (763)
                      ++...+.              .+...+.  .-+.++.|..++.-+++++.|+.-..|
T Consensus       303 ~~~y~pr--------------p~~~~~~--~~~~s~~~~~~~~~f~Tgs~d~ea~n~  343 (1113)
T KOG0644|consen  303 PRIYVPR--------------PLKFTEK--DLVDSILFENNGDRFLTGSRDGEARNH  343 (1113)
T ss_pred             ccccCCC--------------CCCcccc--cceeeeeccccccccccccCCcccccc
Confidence            2211111              1111111  135666666666666666666554444

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.63  E-value=1.2e-14  Score=150.03  Aligned_cols=221  Identities=14%  Similarity=0.206  Sum_probs=156.8

Q ss_pred             ccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCc-----------
Q 004290           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-----------   95 (763)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~-----------   95 (763)
                      ..++.+++  .....++.+|+||++.|+|++|+.||+++|||+.|+.|.||+..-...+ .  ..|...           
T Consensus        32 g~rlliyD--~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k--YSH~D~IQCMsFNP~~h  106 (1081)
T KOG1538|consen   32 GSRLLVYD--TSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K--YSHNDAIQCMSFNPITH  106 (1081)
T ss_pred             CCEEEEEe--CCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e--eccCCeeeEeecCchHH
Confidence            35666666  6677889999999999999999999999999999999999986422111 1  134444           


Q ss_pred             ----------------------------eEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeeccc
Q 004290           96 ----------------------------VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT  147 (763)
Q Consensus        96 ----------------------------V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~  147 (763)
                                                  |.+++|..+  |++|+.|-.+|+|.|-+-.....        ..+..-.+..
T Consensus       107 ~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnD--GqylalG~~nGTIsiRNk~gEek--------~~I~Rpgg~N  176 (1081)
T KOG1538|consen  107 QLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTND--GQYLALGMFNGTISIRNKNGEEK--------VKIERPGGSN  176 (1081)
T ss_pred             HhhhcchhhccccChhhhhHHhhhhheeEEEeeecCC--CcEEEEeccCceEEeecCCCCcc--------eEEeCCCCCC
Confidence                                        445555555  78899998999998875542110        1122233567


Q ss_pred             CceeEEEEecCCC----CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEE
Q 004290          148 RRVKKLAVEVGNP----HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  223 (763)
Q Consensus       148 ~~v~~l~~sp~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  223 (763)
                      .+|.+++|+|..+    .+++......++.++.+.... +                         .....-.....|+.+
T Consensus       177 spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-I-------------------------gk~r~L~FdP~CisY  230 (1081)
T KOG1538|consen  177 SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-I-------------------------GKDRALNFDPCCISY  230 (1081)
T ss_pred             CCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-e-------------------------cccccCCCCchhhee
Confidence            8999999999543    366666677777777665432 1                         001112334568889


Q ss_pred             eCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeE
Q 004290          224 SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV  303 (763)
Q Consensus       224 ~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i  303 (763)
                      .|+ |.+++.|+.|+.+++|-.. |-.+.++                     |....+|+.|+..|++++++.|+.||+|
T Consensus       231 f~N-GEy~LiGGsdk~L~~fTR~-GvrLGTv---------------------g~~D~WIWtV~~~PNsQ~v~~GCqDGTi  287 (1081)
T KOG1538|consen  231 FTN-GEYILLGGSDKQLSLFTRD-GVRLGTV---------------------GEQDSWIWTVQAKPNSQYVVVGCQDGTI  287 (1081)
T ss_pred             ccC-CcEEEEccCCCceEEEeec-CeEEeec---------------------cccceeEEEEEEccCCceEEEEEccCee
Confidence            996 7899999999999999654 3222221                     2233489999999999999999999999


Q ss_pred             EEEECCCC
Q 004290          304 YLMDVNHA  311 (763)
Q Consensus       304 ~iwd~~~~  311 (763)
                      -.|++...
T Consensus       288 ACyNl~fS  295 (1081)
T KOG1538|consen  288 ACYNLIFS  295 (1081)
T ss_pred             ehhhhHHh
Confidence            99998763

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.61  E-value=6e-15  Score=151.29  Aligned_cols=206  Identities=17%  Similarity=0.238  Sum_probs=147.1

Q ss_pred             cCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCe-------EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004290           50 QGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (763)
Q Consensus        50 ~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~-------~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i  121 (763)
                      ...|+.+.|.| |...||.+++||.|+||.+..+.       .-..+ ..|...|+++.|+|-- .+.|++++.|-+|++
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l-t~h~eKI~slRfHPLA-advLa~asyd~Ti~l  704 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL-TIHGEKITSLRFHPLA-ADVLAVASYDSTIEL  704 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee-ecccceEEEEEecchh-hhHhhhhhccceeee
Confidence            35699999999 77899999999999999987542       22334 7899999999999975 689999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004290          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (763)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  201 (763)
                      ||+.+..          ....+.+|.+.|..++|+| +++.+++.+.||+|++|.-++.+.......+...         
T Consensus       705 WDl~~~~----------~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg---------  764 (1012)
T KOG1445|consen  705 WDLANAK----------LYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVG---------  764 (1012)
T ss_pred             eehhhhh----------hhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCcc---------
Confidence            9999843          2456889999999999999 7799999999999999999988755332222111         


Q ss_pred             CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC----CcEEEEeCCCCCC--CcccCCCCCCCCcccccccccccCC
Q 004290          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSEH  275 (763)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D----g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  275 (763)
                                    ..-..|.|.-+ +.++++.+.|    ..|.+||..+...  +.+...+..|               
T Consensus       765 --------------tRgARi~wacd-gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap---------------  814 (1012)
T KOG1445|consen  765 --------------TRGARILWACD-GRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP---------------  814 (1012)
T ss_pred             --------------CcceeEEEEec-CcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC---------------
Confidence                          12234556665 5777776655    5688998876531  1111000000               


Q ss_pred             CCCccceeEEEEcCCCCE-EEEEeCCCeEEEEECCCCC
Q 004290          276 GRSSLHLTHVTFSPNGEE-VLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       276 g~~~~~i~~v~~spdg~~-l~~~s~d~~i~iwd~~~~~  312 (763)
                           .+.--.+.+|... +++|-.|..|++|.+-...
T Consensus       815 -----s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  815 -----SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             -----ccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence                 0111124455554 4556669999999997743

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.61  E-value=1.1e-13  Score=131.67  Aligned_cols=227  Identities=15%  Similarity=0.187  Sum_probs=169.6

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004290           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~---~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~  125 (763)
                      -..+|+|.+|++|+..+|.+-....|-||......   ..+++ ..|...|++++|+|.  .+.|++|+.|+.-++|...
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap~--snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAPK--SNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecCC--CCceeEccCCCCccccccC
Confidence            35789999999999999999999999999887654   56777 789999999999999  6899999999999999985


Q ss_pred             CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004290          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (763)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (763)
                      .+       ..+.+...+..+...++++.|+| ..+.|++|+.-+.|.||-++....              .|-      
T Consensus        86 ~~-------~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENd--------------WWV------  137 (361)
T KOG1523|consen   86 SG-------GTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQEND--------------WWV------  137 (361)
T ss_pred             CC-------CeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccc--------------eeh------
Confidence            32       12567788888999999999999 679999999999999998776431              110      


Q ss_pred             eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccc-cCCCCCccceeE
Q 004290          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL-SEHGRSSLHLTH  284 (763)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~i~~  284 (763)
                       .-.........|++++|+|. +-+|++|+.|+..|+|..--..    +..+..+.+--..+.-+.+ .+.....++|..
T Consensus       138 -sKhikkPirStv~sldWhpn-nVLlaaGs~D~k~rVfSayIK~----Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~  211 (361)
T KOG1523|consen  138 -SKHIKKPIRSTVTSLDWHPN-NVLLAAGSTDGKCRVFSAYIKG----VDEKPAPTPWGSKMPFGQLMSEASSSGGWVHG  211 (361)
T ss_pred             -hhhhCCccccceeeeeccCC-cceecccccCcceeEEEEeeec----cccCCCCCCCccCCcHHHHHHhhccCCCceee
Confidence             00111234567999999996 6799999999999999753211    1111111100000000111 112244457999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          285 VTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       285 v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      +.|+|+|..|+-.+.|..+.+-|...+.
T Consensus       212 v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  212 VLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             eEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            9999999999999999999999988864

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.1e-14  Score=143.88  Aligned_cols=202  Identities=21%  Similarity=0.277  Sum_probs=148.3

Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290           54 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  133 (763)
Q Consensus        54 ~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~  133 (763)
                      .+++|+.+|..|++|+.||++|||++.....+... ..|...|.++.|+|+  +.+|++-+.| ..+||+++++..    
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~----  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAA----  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCch----
Confidence            78999999999999999999999998888777776 688899999999999  7999999999 999999998522    


Q ss_pred             CCCCCCceee--ecccCceeEEEEecCC---C-CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290          134 DNAITPSALY--QCHTRRVKKLAVEVGN---P-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (763)
Q Consensus       134 ~~~~~~~~~~--~~h~~~v~~l~~sp~~---~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (763)
                            +...  ..-......+.|+.++   . .+++....-+.|+.||+.....-                    ....
T Consensus       220 ------~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--------------------~~l~  273 (398)
T KOG0771|consen  220 ------LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS--------------------NFLR  273 (398)
T ss_pred             ------hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--------------------cccc
Confidence                  1111  1222344556776633   1 22333344567777776654310                    0000


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (763)
Q Consensus       208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~  287 (763)
                      ..........|.+++.+++ |+++|.|+.||.|-|++..+.+.+.-.                   .+.|.. .||.|.|
T Consensus       274 ~~~~~~~~~siSsl~VS~d-Gkf~AlGT~dGsVai~~~~~lq~~~~v-------------------k~aH~~-~VT~ltF  332 (398)
T KOG0771|consen  274 LRKKIKRFKSISSLAVSDD-GKFLALGTMDGSVAIYDAKSLQRLQYV-------------------KEAHLG-FVTGLTF  332 (398)
T ss_pred             hhhhhhccCcceeEEEcCC-CcEEEEeccCCcEEEEEeceeeeeEee-------------------hhhhee-eeeeEEE
Confidence            1111122347899999997 799999999999999999987644322                   133544 5999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCC
Q 004290          288 SPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       288 spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      +||.+++++.+.|..+.+..+.-
T Consensus       333 ~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  333 SPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cCCcCcccccccCCceeEEEEee
Confidence            99999999999999999887765

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.61  E-value=2.8e-14  Score=135.60  Aligned_cols=239  Identities=16%  Similarity=0.142  Sum_probs=168.6

Q ss_pred             CceEEEEeC-------CCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-cCCCC---ceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           51 GCVNAISWN-------SKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSA---NVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        51 ~~V~~l~fs-------p~g~~Lasgs~D~~v~iWd~~~~~~~~~~~-~~h~~---~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      +.|...+|-       |+..++|+.+.+.-|.+||.-+|+....+. ..|..   .-.+++|+|+  |.+|+.| ..+.|
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D--GeqlfaG-ykrci  181 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD--GEQLFAG-YKRCI  181 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC--CCeEeec-ccceE
Confidence            457777775       577899999999999999999998776652 12333   3468999999  7888766 57899


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      ++||+..+...+....  ...+...+..+.|.+++|+|.+...++.++.-..+-|+.-....++                
T Consensus       182 rvFdt~RpGr~c~vy~--t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----------------  243 (406)
T KOG2919|consen  182 RVFDTSRPGRDCPVYT--TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----------------  243 (406)
T ss_pred             EEeeccCCCCCCcchh--hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----------------
Confidence            9999965433321000  0011123457889999999998889999999888888776655432                


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC-CCcEEEEeCCCCC-CCcccCCCCCCCCcccccccccccCCCC
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~-Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (763)
                               ....+|.+.|+.++|.++ |+.|++|.. |..|-.||+|... ++..+                    .+|
T Consensus       244 ---------~llggh~gGvThL~~~ed-Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L--------------------~rh  293 (406)
T KOG2919|consen  244 ---------QLLGGHGGGVTHLQWCED-GNKLFSGARKDDKILCWDIRYSRDPVYAL--------------------ERH  293 (406)
T ss_pred             ---------eeecccCCCeeeEEeccC-cCeecccccCCCeEEEEeehhccchhhhh--------------------hhh
Confidence                     222367889999999998 678888874 6789999999643 22221                    112


Q ss_pred             Ccc--ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC-ccceEeecCCCCeeeeeccCCCCcccCC
Q 004290          278 SSL--HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG-GRAMRYTVGDASKIMSFTPTLNGLELQP  340 (763)
Q Consensus       278 ~~~--~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~  340 (763)
                      ...  .---....|++++|++|+.||.|++||+.... ............+.++++|....++...
T Consensus       294 v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  294 VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS  359 (406)
T ss_pred             ccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence            111  12234456899999999999999999999944 3555556677778888888755544443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.61  E-value=4.6e-15  Score=149.56  Aligned_cols=193  Identities=17%  Similarity=0.315  Sum_probs=146.7

Q ss_pred             hhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC
Q 004290           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (763)
Q Consensus        37 ~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d  116 (763)
                      .+..++.+.+..|.+.|.+-.|+|||.-|+|+++||.|++|.- +|....++ .....+|.|++|.|++ ...+.+.+  
T Consensus        91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl-~Q~~~~v~c~~W~p~S-~~vl~c~g--  165 (737)
T KOG1524|consen   91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTV-VQNEESIRCARWAPNS-NSIVFCQG--  165 (737)
T ss_pred             cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHH-hhcCceeEEEEECCCC-CceEEecC--
Confidence            3556778888999999999999999999999999999999984 45444344 4566789999999996 55666554  


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (763)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  196 (763)
                      +.+.|=-+...          ..+-..++|.+-|.++.|+| ..+++++|++|-..++||-...                
T Consensus       166 ~h~~IKpL~~n----------~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~----------------  218 (737)
T KOG1524|consen  166 GHISIKPLAAN----------SKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGA----------------  218 (737)
T ss_pred             CeEEEeecccc----------cceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCc----------------
Confidence            34444444321          22455789999999999999 5589999999999999996543                


Q ss_pred             EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (763)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (763)
                                .+.....|..+|++++|+|+  ..++.++. .++|+=.++.                             
T Consensus       219 ----------~Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R~~~p~~-----------------------------  256 (737)
T KOG1524|consen  219 ----------NLFTSAAEEYAITSVAFNPE--KDYLLWSY-NTARFSSPRV-----------------------------  256 (737)
T ss_pred             ----------ccccCChhccceeeeeeccc--cceeeeee-eeeeecCCCc-----------------------------
Confidence                      23444567889999999997  57777764 4555322222                             


Q ss_pred             CCccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004290          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLM  306 (763)
Q Consensus       277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iw  306 (763)
                         +.|..++||+||..++.|+..|.+.+=
T Consensus       257 ---GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  257 ---GSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             ---cceEEEEEcCCCceeeccccCceEEEe
Confidence               159999999999999999998876543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.60  E-value=1.9e-12  Score=136.23  Aligned_cols=241  Identities=8%  Similarity=0.104  Sum_probs=147.5

Q ss_pred             cccccccchhhh-hccccceeeccccCceEEEEeCCCCCEEEEEe-CCCcEEEEeCC-CCeE--EEEEccCCCCceEEEE
Q 004290           26 VNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYS-SRKL--LHSIETGHSANVFCTK  100 (763)
Q Consensus        26 ~~~~~~~~~~~~-~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs-~D~~v~iWd~~-~~~~--~~~~~~~h~~~V~~v~  100 (763)
                      .++.|.+|+... .+++.+..+. +.+....++++|++++|+.++ .++.|.+|++. +++.  +...  .....+..+.
T Consensus        10 ~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~   86 (330)
T PRK11028         10 ESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHIS   86 (330)
T ss_pred             CCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEE
Confidence            346677776421 3445666665 346678899999999887664 57899999996 3432  2333  2334577899


Q ss_pred             EeeCCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290          101 FVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (763)
Q Consensus       101 ~~p~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~  179 (763)
                      |+|+  +++|++++. ++.|.+|++... +..     ...+..+. +...+..++++|++..++++...++.|.+||+.+
T Consensus        87 ~~~~--g~~l~v~~~~~~~v~v~~~~~~-g~~-----~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028         87 TDHQ--GRFLFSASYNANCVSVSPLDKD-GIP-----VAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             ECCC--CCEEEEEEcCCCeEEEEEECCC-CCC-----CCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence            9999  677777664 889999999742 211     01122222 3345678899995544556666779999999976


Q ss_pred             CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC-CCcEEEEeCCCCC-CCcccCCC
Q 004290          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLP-PLTSCQKR  257 (763)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~-Dg~i~iwd~~~~~-~~~~~~~~  257 (763)
                      ...+.....       ..          +....  ......++|+|+ +++++++.. ++.|.+||+.... .+....  
T Consensus       158 ~g~l~~~~~-------~~----------~~~~~--g~~p~~~~~~pd-g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~--  215 (330)
T PRK11028        158 DGHLVAQEP-------AE----------VTTVE--GAGPRHMVFHPN-QQYAYCVNELNSSVDVWQLKDPHGEIECVQ--  215 (330)
T ss_pred             CCcccccCC-------Cc----------eecCC--CCCCceEEECCC-CCEEEEEecCCCEEEEEEEeCCCCCEEEEE--
Confidence            332100000       00          00000  123467899997 677777765 8999999997421 111000  


Q ss_pred             CCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 004290          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  310 (763)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~  310 (763)
                           .+... |....  +. . ....+.|+|+|++|+++.. ++.|.+|++..
T Consensus       216 -----~~~~~-p~~~~--~~-~-~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        216 -----TLDMM-PADFS--DT-R-WAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             -----EEecC-CCcCC--CC-c-cceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence                 00000 00000  01 1 2456899999999999865 78999999865

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=7.3e-13  Score=134.29  Aligned_cols=223  Identities=14%  Similarity=0.163  Sum_probs=146.4

Q ss_pred             Ccccccccccchhhhhccccceee-ccccCceEEEEeCC--CCCEEEEEeCCCcEEEEeCCC---------Ce-EEEEEc
Q 004290           23 RPDVNHSLQMHSSLVRRLSQEREL-EGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSS---------RK-LLHSIE   89 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l-~gH~~~V~~l~fsp--~g~~Lasgs~D~~v~iWd~~~---------~~-~~~~~~   89 (763)
                      +++-+-++-+|+.+  ..|+++.+ +||...|.++.|-|  +.++++||+.|..|+|+|+..         .+ ....+ 
T Consensus        67 SGSDD~r~ivWd~~--~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~-  143 (758)
T KOG1310|consen   67 SGSDDTRLIVWDPF--EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCW-  143 (758)
T ss_pred             ecCCcceEEeecch--hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhh-
Confidence            45667889999977  34555554 69999999999999  567899999999999999974         11 22333 


Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      ..|...|.-++-.|++ .+.+-+++.||+|+-+|++.+.....+......+..+....-...|+.++|..+.+|+.|+.|
T Consensus       144 ~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsd  222 (758)
T KOG1310|consen  144 SCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSD  222 (758)
T ss_pred             hhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCC
Confidence            6899999999999984 589999999999999999974321111100111112222334578999999999999999999


Q ss_pred             CcEEEEECCCCCCCCCC-----CCCCcccceEEEecCCCceeeccC-CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEE
Q 004290          170 GTLRQHDFRQGSSCPPA-----GSSHQECRNILLDLRCGAKRSLAD-PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iw  243 (763)
                      -..++||.|...+....     ......|..+-+ +..++.+.... .......++-+.|+|+ |.-|++.-....|+++
T Consensus       223 pfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~y-f~p~hlkn~~gn~~~~~~~~t~vtfnpN-GtElLvs~~gEhVYlf  300 (758)
T KOG1310|consen  223 PFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRY-FSPGHLKNSQGNLDRYITCCTYVTFNPN-GTELLVSWGGEHVYLF  300 (758)
T ss_pred             chhhhhhhhhhccCCCCCccccCCCCcccchhhe-ecCccccCcccccccceeeeEEEEECCC-CcEEEEeeCCeEEEEE
Confidence            99999997654432111     111122222111 11111100000 0011123567789997 5566666666789999


Q ss_pred             eCCCCCCC
Q 004290          244 DRRMLPPL  251 (763)
Q Consensus       244 d~~~~~~~  251 (763)
                      |+...+..
T Consensus       301 dvn~~~~~  308 (758)
T KOG1310|consen  301 DVNEDKSP  308 (758)
T ss_pred             eecCCCCc
Confidence            99987644

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.57  E-value=2.1e-13  Score=129.93  Aligned_cols=210  Identities=11%  Similarity=0.086  Sum_probs=133.4

Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  134 (763)
Q Consensus        55 ~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~  134 (763)
                      -++|||+|+++|+++.- .+.|=|.++-+..+.+  .--..|..+.|..++ -.+|.....|+.|.+|++..++.     
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf--~cldki~yieW~ads-~~ilC~~yk~~~vqvwsl~Qpew-----   83 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF--LCLDKIVYIEWKADS-CHILCVAYKDPKVQVWSLVQPEW-----   83 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH--HHHHHhhheeeeccc-eeeeeeeeccceEEEEEeeccee-----
Confidence            46899999999999875 8888888876654443  124578889999885 55666677899999999997543     


Q ss_pred             CCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCC--------CCcccceEEEecCCCc--
Q 004290          135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS--------SHQECRNILLDLRCGA--  204 (763)
Q Consensus       135 ~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~--  204 (763)
                           ...+......+.++.|+|++.+++.+...|-.|.+|.+.+.+.......        .+.+.+...+-.+...  
T Consensus        84 -----~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkd  158 (447)
T KOG4497|consen   84 -----YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKD  158 (447)
T ss_pred             -----EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHH
Confidence                 3455666788999999997778888889999999999988763210000        0000000000000000  


Q ss_pred             ---------eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290          205 ---------KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (763)
Q Consensus       205 ---------~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (763)
                               -..+..+.-.+...+.+.|+|+ |+.||         +||---.-.+.                      .
T Consensus       159 yv~i~~c~~W~ll~~f~~dT~DltgieWsPd-g~~la---------Vwd~~Leykv~----------------------a  206 (447)
T KOG4497|consen  159 YVQISSCKAWILLKEFKLDTIDLTGIEWSPD-GNWLA---------VWDNVLEYKVY----------------------A  206 (447)
T ss_pred             HHHHHhhHHHHHHHhcCCCcccccCceECCC-CcEEE---------Eecchhhheee----------------------e
Confidence                     0001112223345567777776 45554         34322110000                      0


Q ss_pred             CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       276 g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      =+.+..+..+.|+|.+++|++|+.|+.+++-+--+
T Consensus       207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t  241 (447)
T KOG4497|consen  207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT  241 (447)
T ss_pred             eeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence            02222589999999999999999999999876544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=2.1e-13  Score=148.03  Aligned_cols=174  Identities=12%  Similarity=0.122  Sum_probs=110.0

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---CcEEEEECCCCCCCCCCCCCCCCceeeeccc
Q 004290           71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHT  147 (763)
Q Consensus        71 D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~  147 (763)
                      +..|.|||..... ...+ ..|...+.+..|+|+  |+.|+.++.+   ..|++||+.++..        ..+..+.+  
T Consensus       183 ~~~i~i~d~dg~~-~~~l-t~~~~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~--------~~l~~~~g--  248 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIV-NRSSQPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGAR--------KVVASFRG--  248 (429)
T ss_pred             eEEEEEECCCCCC-ceEe-ccCCCccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCce--------EEEecCCC--
Confidence            4689999987554 4445 567888999999999  7888887654   3699999986431        11233333  


Q ss_pred             CceeEEEEecCCCCEEEE-EeCCCcEEEE--ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEe
Q 004290          148 RRVKKLAVEVGNPHVVWS-ASEDGTLRQH--DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS  224 (763)
Q Consensus       148 ~~v~~l~~sp~~~~~l~s-~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  224 (763)
                       ....++|+|++ +.|+. .+.+|.+.||  |+.+++..                       .+   ..+...+.+.+|+
T Consensus       249 -~~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~~~-----------------------~l---t~~~~~~~~~~wS  300 (429)
T PRK01742        249 -HNGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGTPS-----------------------QL---TSGAGNNTEPSWS  300 (429)
T ss_pred             -ccCceeECCCC-CEEEEEEecCCcEEEEEEECCCCCeE-----------------------ee---ccCCCCcCCEEEC
Confidence             34468999954 55544 4578876665  55443310                       11   1123346788999


Q ss_pred             CCCCcEEE-EEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeE
Q 004290          225 STRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV  303 (763)
Q Consensus       225 p~~~~~l~-sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i  303 (763)
                      |+ ++.|+ ++..++..+||++......            ....        ++..   ..+.|+|||++|+.++.++ +
T Consensus       301 pD-G~~i~f~s~~~g~~~I~~~~~~~~~------------~~~l--------~~~~---~~~~~SpDG~~ia~~~~~~-i  355 (429)
T PRK01742        301 PD-GQSILFTSDRSGSPQVYRMSASGGG------------ASLV--------GGRG---YSAQISADGKTLVMINGDN-V  355 (429)
T ss_pred             CC-CCEEEEEECCCCCceEEEEECCCCC------------eEEe--------cCCC---CCccCCCCCCEEEEEcCCC-E
Confidence            98 55555 5556788899987642210            0000        0111   2467999999998887765 5


Q ss_pred             EEEECCCC
Q 004290          304 YLMDVNHA  311 (763)
Q Consensus       304 ~iwd~~~~  311 (763)
                      .+||+.++
T Consensus       356 ~~~Dl~~g  363 (429)
T PRK01742        356 VKQDLTSG  363 (429)
T ss_pred             EEEECCCC
Confidence            55888764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=2.2e-13  Score=148.00  Aligned_cols=265  Identities=15%  Similarity=0.249  Sum_probs=186.5

Q ss_pred             CCCCCCCCchhhhhhccccCC----Ccccccccccchhhhhcc---cccee---ecccc----CceEEEEeCCCCCEEEE
Q 004290            2 ENFPFHDGSIYDMLDTRHTDT----RPDVNHSLQMHSSLVRRL---SQERE---LEGHQ----GCVNAISWNSKGSLLIS   67 (763)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~---l~gH~----~~V~~l~fsp~g~~Las   67 (763)
                      ++..|.+...++|..-++.+.    .+..+..|++|+.+....   +++.-   |.++.    +.=.-++|.....+|++
T Consensus      1103 ~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~ 1182 (1387)
T KOG1517|consen 1103 DNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLV 1182 (1387)
T ss_pred             cCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEe
Confidence            445566777777777666554    578899999999887653   33322   22221    11133567775555555


Q ss_pred             EeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeeccc
Q 004290           68 GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT  147 (763)
Q Consensus        68 gs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~  147 (763)
                      ++.-..|+|||.....+...+..+....|+++.-+... |++++.|-.||.|++||.+.....       ..+...+.|.
T Consensus      1183 tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~d-------s~v~~~R~h~ 1254 (1387)
T KOG1517|consen 1183 TGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPD-------SLVCVYREHN 1254 (1387)
T ss_pred             cCCeeEEEEEecccceeEeecccCCCccceeecccccC-CceEEEeecCCceEEeecccCCcc-------ccceeecccC
Confidence            55578999999999999988877777788888777665 799999999999999999975433       2366778888


Q ss_pred             Cc--eeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeC
Q 004290          148 RR--VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS  225 (763)
Q Consensus       148 ~~--v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p  225 (763)
                      ..  |..+.+.+.+-..+++|+.||.|++||+|......            +.+        +.....-...++++..++
T Consensus      1255 ~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~------------~~~--------iv~~~~yGs~lTal~VH~ 1314 (1387)
T KOG1517|consen 1255 DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET------------FLT--------IVAHWEYGSALTALTVHE 1314 (1387)
T ss_pred             CcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc------------cce--------eeeccccCccceeeeecc
Confidence            87  99999988554569999999999999999853110            000        000000012488999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEE
Q 004290          226 TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL  305 (763)
Q Consensus       226 ~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~i  305 (763)
                      + ..++|+|+. +.|+||++...+ +..+.           +.+..   .+...+.+.+++|+|---+|++|+.|.+|.|
T Consensus      1315 h-apiiAsGs~-q~ikIy~~~G~~-l~~~k-----------~n~~F---~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1315 H-APIIASGSA-QLIKIYSLSGEQ-LNIIK-----------YNPGF---MGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred             C-CCeeeecCc-ceEEEEecChhh-hcccc-----------cCccc---ccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence            7 579999998 999999987433 22211           00111   1222335899999999999999999999999


Q ss_pred             EECCCC
Q 004290          306 MDVNHA  311 (763)
Q Consensus       306 wd~~~~  311 (763)
                      |....+
T Consensus      1378 Ys~~k~ 1383 (1387)
T KOG1517|consen 1378 YSCEKP 1383 (1387)
T ss_pred             eecCCc
Confidence            987664

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=3.8e-13  Score=122.92  Aligned_cols=231  Identities=15%  Similarity=0.196  Sum_probs=155.2

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCC---------Ce-EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSS---------RK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~---------~~-~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i  121 (763)
                      .|.+-+|+|.+++|+.|+.+|+|-+..+..         ++ .+..+ ++|.++|+.++|.-    .+|++|+ ||.|+=
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~e-qahdgpiy~~~f~d----~~Lls~g-dG~V~g   85 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPE-QAHDGPIYYLAFHD----DFLLSGG-DGLVYG   85 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeec-cccCCCeeeeeeeh----hheeecc-CceEEE
Confidence            466778999999999999999999998753         22 34444 79999999999993    5788877 599999


Q ss_pred             EECCCCCCCCCCC---CCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290          122 FNLSRFSGRGLDD---NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (763)
Q Consensus       122 wd~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  198 (763)
                      |..+......-..   ....|.++-.-.-..|++|-..|..+.+| .++.|+.++.||+++++                 
T Consensus        86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~-----------------  147 (325)
T KOG0649|consen   86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGR-----------------  147 (325)
T ss_pred             eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCE-----------------
Confidence            9887532210000   00111222111234689999999665555 55589999999999986                 


Q ss_pred             ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (763)
                              ......+|+..|.++.--..+ ..+++|+.||++|+||.++++.+..+..-..+ .+        +  +.|.
T Consensus       148 --------i~r~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~-~~--------l--Rp~~  207 (325)
T KOG0649|consen  148 --------IQREYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP-NL--------L--RPDW  207 (325)
T ss_pred             --------EEEEEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccCh-hh--------c--Cccc
Confidence                    223445788899999884433 47999999999999999998866554321111 11        1  2245


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeec
Q 004290          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT  330 (763)
Q Consensus       279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  330 (763)
                      +.+|.+++-+.  .+|++| ..-.+.+|.++... ....+.....+..+.|.
T Consensus       208 g~wigala~~e--dWlvCG-gGp~lslwhLrsse-~t~vfpipa~v~~v~F~  255 (325)
T KOG0649|consen  208 GKWIGALAVNE--DWLVCG-GGPKLSLWHLRSSE-STCVFPIPARVHLVDFV  255 (325)
T ss_pred             CceeEEEeccC--ceEEec-CCCceeEEeccCCC-ceEEEecccceeEeeee
Confidence            55687777654  566655 45678999999954 34444444444445544

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.55  E-value=5.1e-14  Score=130.21  Aligned_cols=247  Identities=15%  Similarity=0.145  Sum_probs=166.3

Q ss_pred             hhccccCCCcccccccccchhhhhccccceeec-cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEE-------
Q 004290           15 LDTRHTDTRPDVNHSLQMHSSLVRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-------   86 (763)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~-------   86 (763)
                      .+..+...+.....-+++|.  .++.+..-.++ -|...|+.+.--|+ ..|.+=+.|+.+.+|++.-+..+.       
T Consensus        22 fqa~~rL~sg~~~G~V~~w~--lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~n   98 (323)
T KOG0322|consen   22 FQANERLMSGLSVGIVKMWV--LQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVN   98 (323)
T ss_pred             hccchhhhcccccceEEEEE--eecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeecc
Confidence            33334444455566777887  44445555666 46788999998887 567888999999999986522110       


Q ss_pred             -------EEc--------------------------------------cCCCCceEEEEEeeCCC-CcEEEEEeCCCcEE
Q 004290           87 -------SIE--------------------------------------TGHSANVFCTKFVPETS-DELVVSGAGDAEVR  120 (763)
Q Consensus        87 -------~~~--------------------------------------~~h~~~V~~v~~~p~~~-~~~l~s~s~dg~I~  120 (763)
                             .+.                                      .+..+.+.|..+..+.. .-+++.|-++|.|.
T Consensus        99 slgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv  178 (323)
T KOG0322|consen   99 SLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVV  178 (323)
T ss_pred             ccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEE
Confidence                   000                                      12224455555433221 23566777899999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  200 (763)
                      +||+.++.........++.......|.++|.++.|.+.- ..=++|+.+..+..|.+.......+.        .....+
T Consensus       179 ~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~--------~~e~~l  249 (323)
T KOG0322|consen  179 IWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQI--------RKEITL  249 (323)
T ss_pred             EEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccc--------cceEEe
Confidence            999998533222222334455567899999999998733 33347888889999988765311000        001111


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (763)
                                   ....|..+.+-|| ++++|+++.|+.||||.-++++++..+                    .-|+. 
T Consensus       250 -------------knpGv~gvrIRpD-~KIlATAGWD~RiRVyswrtl~pLAVL--------------------kyHsa-  294 (323)
T KOG0322|consen  250 -------------KNPGVSGVRIRPD-GKILATAGWDHRIRVYSWRTLNPLAVL--------------------KYHSA-  294 (323)
T ss_pred             -------------cCCCccceEEccC-CcEEeecccCCcEEEEEeccCCchhhh--------------------hhhhc-
Confidence                         1234677888897 689999999999999999999876544                    12554 


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004290          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (763)
Q Consensus       281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~  308 (763)
                      .|++|+|+|+...+++++.|++|.+|++
T Consensus       295 gvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  295 GVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ceeEEEeCCCCchhhhccCCceEEeeec
Confidence            5999999999999999999999999986

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=7.2e-13  Score=128.80  Aligned_cols=273  Identities=12%  Similarity=0.069  Sum_probs=182.6

Q ss_pred             cccccccccch---hhhhcc-ccceeeccc-cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCC---Cc
Q 004290           24 PDVNHSLQMHS---SLVRRL-SQERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS---AN   95 (763)
Q Consensus        24 ~~~~~~~~~~~---~~~~~~-~~~~~l~gH-~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~---~~   95 (763)
                      ++-++...+|.   ...++. |++.....| ...|.||+|....++|.+|..+++|.+-|+++.+.+..+  .|.   +.
T Consensus        74 GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~--~~~~~~~~  151 (609)
T KOG4227|consen   74 GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA--NENNNRGD  151 (609)
T ss_pred             cCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee--cccCcccc
Confidence            44456666664   345555 777766554 489999999999999999999999999999999988877  344   58


Q ss_pred             eEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004290           96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (763)
Q Consensus        96 V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iw  175 (763)
                      |+.+..+|.  .+.|++.+.++.|.+||.+......      . ...........+.+.|+|..+.+|++.+..+-+-+|
T Consensus       152 VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~------~-~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~  222 (609)
T KOG4227|consen  152 VYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPI------S-LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVF  222 (609)
T ss_pred             eeecccCCC--CceEEEEecCceEEEEeccCCCCCC------c-eeeecCCCccceeeeecCCCceeEEeccccCCCCce
Confidence            999999999  7999999999999999998643111      1 122233455678899999999999999999999999


Q ss_pred             ECCCCCCCCCCCC------C-Ccccc-------------------eEEEecCCCceeeccCC--C---CCccceEEEEEe
Q 004290          176 DFRQGSSCPPAGS------S-HQECR-------------------NILLDLRCGAKRSLADP--P---KQTLSLKSCDIS  224 (763)
Q Consensus       176 d~~~~~~~~~~~~------~-~~~~~-------------------~~~~~~~~~~~~~~~~~--~---~~~~~v~~i~~~  224 (763)
                      |++..........      . .....                   .+++++.......+..-  +   .....+.+++|.
T Consensus       223 D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~  302 (609)
T KOG4227|consen  223 DRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFI  302 (609)
T ss_pred             eeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeee
Confidence            9998764311100      0 00001                   12223222111111111  1   122356788888


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCC--CCcccccccc-cccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 004290          225 STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP--PPCVNYFCPM-HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE  301 (763)
Q Consensus       225 p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~  301 (763)
                      .+  ..+++|+.+-.|+||.+........+......  ......+..+ .....||.. -++.|.|+|...+|++++-.+
T Consensus       303 ~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS-v~NQVRF~~H~~~l~SSGVE~  379 (609)
T KOG4227|consen  303 DD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS-VPNQVRFSQHNNLLVSSGVEN  379 (609)
T ss_pred             cc--eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc-cccceeecCCcceEeccchhh
Confidence            75  46999999999999998754433322111110  0001111111 122367887 489999999998888888899


Q ss_pred             eEEEEECCC
Q 004290          302 HVYLMDVNH  310 (763)
Q Consensus       302 ~i~iwd~~~  310 (763)
                      .++||.-..
T Consensus       380 ~~KlWS~~r  388 (609)
T KOG4227|consen  380 SFKLWSDHR  388 (609)
T ss_pred             heecccccc
Confidence            999996544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.54  E-value=1.8e-12  Score=143.39  Aligned_cols=193  Identities=18%  Similarity=0.241  Sum_probs=133.2

Q ss_pred             EeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEe
Q 004290           77 WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE  156 (763)
Q Consensus        77 Wd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  156 (763)
                      |+. .|..+..+ ..|...|..++.++.. +.+|+|||.||+|++||.+...+..   ...+...++.--..++.++.+.
T Consensus      1034 W~p-~G~lVAhL-~Ehs~~v~k~a~s~~~-~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNP-RGILVAHL-HEHSSAVIKLAVSSEH-TSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred             CCc-cceEeehh-hhccccccceeecCCC-CceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEec
Confidence            665 46777777 7899999999999885 6999999999999999998644331   1122333444456788899888


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCc-EEEEEe
Q 004290          157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGG  235 (763)
Q Consensus       157 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~-~l~sgs  235 (763)
                      + +++.+|.++.||.|++.++.......      ..+..          ..+.........|..-+|...... .++.+.
T Consensus      1108 ~-~~~~~Av~t~DG~v~~~~id~~~~~~------~~~~~----------~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1108 G-NGDQFAVSTKDGSVRVLRIDHYNVSK------RVATQ----------VRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred             c-CCCeEEEEcCCCeEEEEEcccccccc------ceeee----------eecccccCCCceEEeecccccccceeEEEEE
Confidence            8 67889999999999999987742110      00000          000011111122333344443344 788888


Q ss_pred             CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          236 SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .-+.|..||+++...+..+...                   ...+.|++++.+|.+.++++|+..|.+.+||++-.
T Consensus      1171 ~~~~iv~~D~r~~~~~w~lk~~-------------------~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQ-------------------LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred             eccceEEecchhhhhHHhhhcC-------------------ccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence            8999999999987655443211                   12225999999999999999999999999999873

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.53  E-value=5.8e-12  Score=122.49  Aligned_cols=217  Identities=20%  Similarity=0.319  Sum_probs=149.6

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccC--CCCceEEEEEeeCCCCcEEEEEe--CCCcEEEEECCC
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSGA--GDAEVRLFNLSR  126 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~l~s~s--~dg~I~iwd~~~  126 (763)
                      ..|.+|.++  -++|+.+=.+ .|.|||+.+.+.++++...  +...+.  +++|+.++.+|+.-+  ..|.|.+||+.+
T Consensus        88 t~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~--AlS~n~~n~ylAyp~s~t~GdV~l~d~~n  162 (391)
T KOG2110|consen   88 TSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLC--ALSPNNANCYLAYPGSTTSGDVVLFDTIN  162 (391)
T ss_pred             CceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceE--eeccCCCCceEEecCCCCCceEEEEEccc
Confidence            457777765  4567777665 5999999999999998544  333444  455543356777633  368899999987


Q ss_pred             CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc-EEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004290          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (763)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (763)
                                .++...+.+|++.+-+|+|++ +|.+|||+++.|+ |||+.+.+++.              ++.++.|- 
T Consensus       163 ----------l~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~k--------------l~eFRRG~-  216 (391)
T KOG2110|consen  163 ----------LQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQK--------------LYEFRRGT-  216 (391)
T ss_pred             ----------ceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccE--------------eeeeeCCc-
Confidence                      356788899999999999999 7799999999997 78999988763              34444332 


Q ss_pred             eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCC---------------CC-------c
Q 004290          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP---------------PP-------C  263 (763)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~---------------~~-------~  263 (763)
                              ....|.+++|+|+ +.+|++.++.++|+||.+.... ......+...               |.       .
T Consensus       217 --------~~~~IySL~Fs~d-s~~L~~sS~TeTVHiFKL~~~~-~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~  286 (391)
T KOG2110|consen  217 --------YPVSIYSLSFSPD-SQFLAASSNTETVHIFKLEKVS-NNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQ  286 (391)
T ss_pred             --------eeeEEEEEEECCC-CCeEEEecCCCeEEEEEecccc-cCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhh
Confidence                    1457899999998 6899999999999999987643 1111100000               00       0


Q ss_pred             ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      .+.|...++...+..  .+..+.-.+....+.+++.||.++.|.+.-
T Consensus       287 ~R~FAt~~l~~s~~~--~~~~l~~~~~~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  287 SRKFATAKLPESGRK--NICSLSSIQKIPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             ccceeEEEccCCCcc--ceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence            111222222222222  244444346788999999999999998876

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=5.8e-13  Score=144.62  Aligned_cols=235  Identities=12%  Similarity=0.097  Sum_probs=150.3

Q ss_pred             cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCC---CcEEEEeCCCCeE--EEEEccCCCCceEEEEEe
Q 004290           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKL--LHSIETGHSANVFCTKFV  102 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D---~~v~iWd~~~~~~--~~~~~~~h~~~V~~v~~~  102 (763)
                      ..|.+++..-   ...+.+..|...|.+.+|+|||+.||.++.+   ..|++||+.+++.  +..+ .+|   ...++|+
T Consensus       184 ~~i~i~d~dg---~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-~g~---~~~~~wS  256 (429)
T PRK01742        184 YEVRVADYDG---FNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-RGH---NGAPAFS  256 (429)
T ss_pred             EEEEEECCCC---CCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-CCc---cCceeEC
Confidence            4566665322   2245677888899999999999999987654   3699999988754  3222 333   4468999


Q ss_pred             eCCCCcEEEEE-eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290          103 PETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (763)
Q Consensus       103 p~~~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~  181 (763)
                      |+  ++.|+.+ +.+|.+.||.+....+         ....+..+...+....|+|++..+++++..+|...+|++....
T Consensus       257 PD--G~~La~~~~~~g~~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~  325 (429)
T PRK01742        257 PD--GSRLAFASSKDGVLNIYVMGANGG---------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG  325 (429)
T ss_pred             CC--CCEEEEEEecCCcEEEEEEECCCC---------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            99  6777765 4688776664432111         1344555677788999999554455555567888998875432


Q ss_pred             CCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC
Q 004290          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (763)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (763)
                      ..                     ...+ .   +..  ...+|+|+ +++|+..+.++ +.+||+.+++.....       
T Consensus       326 ~~---------------------~~~l-~---~~~--~~~~~SpD-G~~ia~~~~~~-i~~~Dl~~g~~~~lt-------  369 (429)
T PRK01742        326 GG---------------------ASLV-G---GRG--YSAQISAD-GKTLVMINGDN-VVKQDLTSGSTEVLS-------  369 (429)
T ss_pred             CC---------------------eEEe-c---CCC--CCccCCCC-CCEEEEEcCCC-EEEEECCCCCeEEec-------
Confidence            11                     0001 0   111  34679997 67887777765 455999876421100       


Q ss_pred             CcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC--CCCccceEeecCCCCeeeeeccC
Q 004290          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN--HAGGRAMRYTVGDASKIMSFTPT  332 (763)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~p~  332 (763)
                                   ...   ....+.|+|||++|+.++.++.+.+|.+.  ++........+.......+|+|.
T Consensus       370 -------------~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        370 -------------STF---LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             -------------CCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence                         001   13457799999999999999988888764  33333333334455666778875

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=3.3e-13  Score=133.44  Aligned_cols=74  Identities=15%  Similarity=0.224  Sum_probs=66.6

Q ss_pred             cccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEE-ecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCC
Q 004290          625 VGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKML-LGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASV  702 (763)
Q Consensus       625 ~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l-~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~  702 (763)
                      .++++.    -|.||+|+|-|+.||.|-|++..+.+.++.. ++|...|+.|+|+|+.+++++.+.|..+.|-.+.-..
T Consensus       283 siSsl~----VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~  357 (398)
T KOG0771|consen  283 SISSLA----VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK  357 (398)
T ss_pred             cceeEE----EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence            455566    7999999999999999999999999988766 6899999999999999999999999999998877654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=3.2e-12  Score=137.51  Aligned_cols=178  Identities=13%  Similarity=0.149  Sum_probs=127.2

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC---CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~---~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~  124 (763)
                      .|.-.++|.++||+++++|+|..||+|.+|.--.   .....++..-|...|+++.|+++  |.+|+||+..+.+.+|.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~--G~~LlSGG~E~VLv~Wq~  280 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD--GAYLLSGGREGVLVLWQL  280 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC--CceEeecccceEEEEEee
Confidence            4677799999999999999999999999996432   22333343678899999999999  899999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                      .+++           .+-+..-..+|..+.++| ++.+.+....|..|.+....+......+ ++-..+-      ..  
T Consensus       281 ~T~~-----------kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tI-sgi~~~~------~~--  339 (792)
T KOG1963|consen  281 ETGK-----------KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTI-SGIKPPT------PS--  339 (792)
T ss_pred             cCCC-----------cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhc-cCccCCC------cc--
Confidence            9854           233455678999999999 5677778888999999877554422110 0000000      00  


Q ss_pred             eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCccc
Q 004290          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (763)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~  254 (763)
                           .......-.+.++++|. .+.++-.+..+.|.+||+-+...+..+
T Consensus       340 -----~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i~~~  383 (792)
T KOG1963|consen  340 -----TKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTIYKL  383 (792)
T ss_pred             -----ccccccccceeEEEcCC-CCceeecCCCceEEEEeccccceeeeE
Confidence                 00112334567778884 567777788888888888776655443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.50  E-value=2.3e-11  Score=118.33  Aligned_cols=194  Identities=11%  Similarity=0.149  Sum_probs=141.2

Q ss_pred             eEEEEeCCCCCEEEEEeCC--CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290           53 VNAISWNSKGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (763)
Q Consensus        53 V~~l~fsp~g~~Lasgs~D--~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~  130 (763)
                      |--+-|+  ..++|..+.+  +.+++.+++.+..+..+.  ...+|.+|.++.+    .|+++-.+ .|+|||++..   
T Consensus        49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr~----RLvV~Lee-~IyIydI~~M---  116 (391)
T KOG2110|consen   49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNRK----RLVVCLEE-SIYIYDIKDM---  116 (391)
T ss_pred             EEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEccc----eEEEEEcc-cEEEEecccc---
Confidence            4445555  3466655544  459999999888888773  4567999999865    55555554 4999999972   


Q ss_pred             CCCCCCCCCceeee---cccCceeEEEEecCCCCEEEE-Ee-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004290          131 GLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWS-AS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (763)
Q Consensus       131 ~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~~l~s-~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (763)
                             +.+.++.   .+...+..+.+++. ..+++- ++ ..|.|.+||+.+-+.                       
T Consensus       117 -------klLhTI~t~~~n~~gl~AlS~n~~-n~ylAyp~s~t~GdV~l~d~~nl~~-----------------------  165 (391)
T KOG2110|consen  117 -------KLLHTIETTPPNPKGLCALSPNNA-NCYLAYPGSTTSGDVVLFDTINLQP-----------------------  165 (391)
T ss_pred             -------eeehhhhccCCCccceEeeccCCC-CceEEecCCCCCceEEEEEccccee-----------------------
Confidence                   3344443   34445555555552 235543 22 358999999877542                       


Q ss_pred             eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCc-EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (763)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  284 (763)
                        +.....|.+.+.+++|+++ |.+||+++..|+ ||||.+.+++.+..|...                   .....|.+
T Consensus       166 --v~~I~aH~~~lAalafs~~-G~llATASeKGTVIRVf~v~~G~kl~eFRRG-------------------~~~~~IyS  223 (391)
T KOG2110|consen  166 --VNTINAHKGPLAALAFSPD-GTLLATASEKGTVIRVFSVPEGQKLYEFRRG-------------------TYPVSIYS  223 (391)
T ss_pred             --eeEEEecCCceeEEEECCC-CCEEEEeccCceEEEEEEcCCccEeeeeeCC-------------------ceeeEEEE
Confidence              2233468899999999997 799999999998 899999999888776432                   22336999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          285 VTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       285 v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ++|+|++.+|.+.+..++|++|.+...
T Consensus       224 L~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  224 LSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             EEECCCCCeEEEecCCCeEEEEEeccc
Confidence            999999999999999999999999874

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.49  E-value=4.7e-12  Score=121.65  Aligned_cols=234  Identities=15%  Similarity=0.245  Sum_probs=154.8

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE----EEEEccCCC------------CceEEEEEeeCCCCcEEEEE
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL----LHSIETGHS------------ANVFCTKFVPETSDELVVSG  113 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~----~~~~~~~h~------------~~V~~v~~~p~~~~~~l~s~  113 (763)
                      .+-|.++.|...|.+||+|..+|.|.++.-+....    ..+..+.|.            ..|..+.|.++.+...++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            46789999999999999999999999997553321    222224443            56889999998777788888


Q ss_pred             eCCCcEEEEECCCCCCCCCC-------------------------CCCCCCceee-ecccCceeEEEEecCCCCEEEEEe
Q 004290          114 AGDAEVRLFNLSRFSGRGLD-------------------------DNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS  167 (763)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~-------------------------~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s  167 (763)
                      ..|++|++|.+.........                         .....|.+.+ .+|.--|++|.++. +...++++ 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA-  182 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA-  182 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-
Confidence            89999999999864332200                         0001112222 35778899999998 44566554 


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                      .|=.|.+|++.-....           .-+.|.++....      .-+..|++..|+|..-++|+-.++.|+||+-|+|.
T Consensus       183 DdLRINLWnlei~d~s-----------FnIVDIKP~nmE------eLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQS-----------FNIVDIKPANME------ELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             cceeeeeccccccCCc-----------eeEEEccccCHH------HHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence            6788999998765422           334444432221      12456889999998888999999999999999995


Q ss_pred             CCCCcc----cCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          248 LPPLTS----CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       248 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      ......    +..+.. +.....| .      +--. .|..+.|+++|+|+++-. --+|++||++...
T Consensus       246 ~aLCd~hsKlfEeped-p~~rsff-s------eiIs-SISDvKFs~sGryilsRD-yltvk~wD~nme~  304 (433)
T KOG1354|consen  246 SALCDAHSKLFEEPED-PSSRSFF-S------EIIS-SISDVKFSHSGRYILSRD-YLTVKLWDLNMEA  304 (433)
T ss_pred             hhhhcchhhhhccccC-CcchhhH-H------HHhh-hhhceEEccCCcEEEEec-cceeEEEeccccC
Confidence            432111    111111 1111111 0      0111 488999999999987542 2689999997743

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.48  E-value=3.9e-12  Score=129.10  Aligned_cols=70  Identities=21%  Similarity=0.456  Sum_probs=62.8

Q ss_pred             cccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCC---------------------------------
Q 004290          634 FLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPF---------------------------------  680 (763)
Q Consensus       634 ~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~---------------------------------  680 (763)
                      +|||||+|||+|++|--|.||.+...++|..-+||.++|+.|+|-|-                                 
T Consensus       339 cWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S  418 (636)
T KOG2394|consen  339 CWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGS  418 (636)
T ss_pred             EEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCC
Confidence            39999999999999999999999999999999999999999999831                                 


Q ss_pred             --C-------------CeEEEEeCCCcEEEEcCCCCCC
Q 004290          681 --D-------------CVVATSGIDNTIKIWTPSASVP  703 (763)
Q Consensus       681 --~-------------~~laS~s~D~~IrvW~~~~~~~  703 (763)
                        +             -.|.|.|.|-.++|||+.....
T Consensus       419 ~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L  456 (636)
T KOG2394|consen  419 AEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL  456 (636)
T ss_pred             cCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence              0             1588999999999999987743

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=2.4e-12  Score=117.76  Aligned_cols=211  Identities=18%  Similarity=0.229  Sum_probs=145.0

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE------E-EEEccCCC-----CceEEEEEeeCCCCc
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL------L-HSIETGHS-----ANVFCTKFVPETSDE  108 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~------~-~~~~~~h~-----~~V~~v~~~p~~~~~  108 (763)
                      .++...++|.++|+.++|.  ..+|++|+. |.|+-|.+.....      + .....-|.     -.|+++-..|..  +
T Consensus        53 ~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--n  127 (325)
T KOG0649|consen   53 LKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--N  127 (325)
T ss_pred             cceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--C
Confidence            4455669999999999998  456777765 9999998754321      1 11111222     468999999984  5


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004290          109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (763)
Q Consensus       109 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  188 (763)
                      -++.++.|+.++.||++++          +..+.+++|++.|.++.--..++ .++||++||++++||+++.+....+..
T Consensus       128 Si~~AgGD~~~y~~dlE~G----------~i~r~~rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~  196 (325)
T KOG0649|consen  128 SILFAGGDGVIYQVDLEDG----------RIQREYRGHTDYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQKHVSMIEP  196 (325)
T ss_pred             cEEEecCCeEEEEEEecCC----------EEEEEEcCCcceeeeeeecccCc-ceeecCCCccEEEEeccccceeEEecc
Confidence            5556668999999999974          34788999999999998854354 455999999999999999885422111


Q ss_pred             CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccc
Q 004290          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  268 (763)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  268 (763)
                      -           .    ..-...+.....|.+++.+.   .+|++|+ ...+.+|.++..+....++-            
T Consensus       197 y-----------k----~~~~lRp~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse~t~vfpi------------  245 (325)
T KOG0649|consen  197 Y-----------K----NPNLLRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSESTCVFPI------------  245 (325)
T ss_pred             c-----------c----ChhhcCcccCceeEEEeccC---ceEEecC-CCceeEEeccCCCceEEEec------------
Confidence            0           0    00111122345677888765   4888776 46789999998765433321            


Q ss_pred             cccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       269 ~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                                ..++..+.|-.|  .+++++..+.|.-|.+..
T Consensus       246 ----------pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  246 ----------PARVHLVDFVDD--CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             ----------ccceeEeeeecc--eEEEeccccceeeeeecc
Confidence                      114677777554  678888888899998765

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.46  E-value=3.3e-12  Score=122.79  Aligned_cols=245  Identities=19%  Similarity=0.191  Sum_probs=178.9

Q ss_pred             hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEe-CCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC
Q 004290           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (763)
Q Consensus        38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd-~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d  116 (763)
                      .+..+++.++||.+.|+....-|...-+++.+.|.++|||- .+.++.-..+......+++++.+.++  ...|+.|-..
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e--~~~L~vg~~n   89 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE--SRRLYVGQDN   89 (404)
T ss_pred             cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc--ceEEEEEEec
Confidence            45567788999999999999989888899999999999995 44555555554445688999999999  5899999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC-----------
Q 004290          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP-----------  185 (763)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~-----------  185 (763)
                      |++.-+.+..-      -++....+....|..++..+.|+- ...++++.+.|..+.---.+.+..+..           
T Consensus        90 gtvtefs~sed------fnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~  162 (404)
T KOG1409|consen   90 GTVTEFALSED------FNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ  162 (404)
T ss_pred             ceEEEEEhhhh------hhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence            99998887641      222345667778999999999987 567888999988775544444443210           


Q ss_pred             -----CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCC
Q 004290          186 -----AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (763)
Q Consensus       186 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~  260 (763)
                           ...+....+.....+.......+....+|...+++++|.|. ..+|.+|..|..+.+||+--.+-.         
T Consensus       163 ~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~---------  232 (404)
T KOG1409|consen  163 FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGT---------  232 (404)
T ss_pred             eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcce---------
Confidence                 00111112222222222333445566789999999999996 679999999999999999754311         


Q ss_pred             CCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       261 ~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                                .....||.. .|..+...+--+.|++++.||.|.+|+++...
T Consensus       233 ----------~~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  233 ----------AYELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             ----------eeeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence                      112245655 48888888888889999999999999998843

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.45  E-value=9.9e-12  Score=121.72  Aligned_cols=78  Identities=23%  Similarity=0.423  Sum_probs=69.6

Q ss_pred             cccccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEE-EecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCC
Q 004290          623 CNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKM-LLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS  701 (763)
Q Consensus       623 ~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~-l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~  701 (763)
                      .+.++++.    .-|+|++|++|..-|.+..+|..+++++.. |+|-.+.|+++..||..++|||+|.|+-|||+|+++.
T Consensus       247 E~~is~~~----l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  247 ENPISSTG----LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             cCcceeee----ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            34455555    778999999999999999999999999877 9999999999999999999999999999999999996


Q ss_pred             CCc
Q 004290          702 VPS  704 (763)
Q Consensus       702 ~~~  704 (763)
                      ..+
T Consensus       323 kll  325 (412)
T KOG3881|consen  323 KLL  325 (412)
T ss_pred             hhh
Confidence            544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=2.2e-11  Score=124.66  Aligned_cols=229  Identities=16%  Similarity=0.183  Sum_probs=148.4

Q ss_pred             cccchhhhhccccceeeccccCceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCc
Q 004290           30 LQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE  108 (763)
Q Consensus        30 ~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~  108 (763)
                      ++-.-...+++.++..|. |....+.|..+|||+|| |||...-.|++||+.+-...  |..+-...|..+....+. -.
T Consensus        32 lkkd~~~~~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD-~S  107 (703)
T KOG2321|consen   32 LKKDVDYRQRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDD-YS  107 (703)
T ss_pred             HhhchHHHHHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccc-hh
Confidence            333344566677777775 78888999999999965 68889999999999865433  322223334333333331 44


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004290          109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (763)
Q Consensus       109 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  188 (763)
                      .++--..|++|.+..---             .+.-..-...-.+|+++..+-.++ .++....|+-+++..+.-+     
T Consensus       108 K~v~L~~DR~IefHak~G-------------~hy~~RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL-----  168 (703)
T KOG2321|consen  108 KSVFLQNDRTIEFHAKYG-------------RHYRTRIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFL-----  168 (703)
T ss_pred             hheEeecCceeeehhhcC-------------eeeeeecCcCCccccccCCCccEE-EeecCcceEEEEccccccc-----
Confidence            555556677776654331             000001122335566654344455 4445567999999988633     


Q ss_pred             CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccc
Q 004290          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  268 (763)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  268 (763)
                                          ..+......+++|..++.+ .+|++|+.+|.|..||.|+...+.++.....    +    
T Consensus       169 --------------------~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~----v----  219 (703)
T KOG2321|consen  169 --------------------NPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASS----V----  219 (703)
T ss_pred             --------------------cccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccc----c----
Confidence                                1112234678999999974 6999999999999999998876655432211    0    


Q ss_pred             cccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       269 ~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      +.+.  .+.....|+++.|+.+|-.+++|+.+|.|+|||++...
T Consensus       220 ~s~p--g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~  261 (703)
T KOG2321|consen  220 NSHP--GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK  261 (703)
T ss_pred             CCCc--cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence            0111  11222359999999999999999999999999999843

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.43  E-value=5.9e-11  Score=124.58  Aligned_cols=198  Identities=16%  Similarity=0.171  Sum_probs=121.0

Q ss_pred             CEE-EEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004290           63 SLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (763)
Q Consensus        63 ~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  141 (763)
                      +++ ++-..++.|.|.|..+.+.+.++..+ ...-..+.|+|+  ++++++++.||.|.++|+.+.          +.+.
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~-~~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~----------~~v~   72 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTG-GAPHAGLKFSPD--GRYLYVANRDGTVSVIDLATG----------KVVA   72 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-S-TTEEEEEE-TT---SSEEEEEETTSEEEEEETTSS----------SEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCC-CCceeEEEecCC--CCEEEEEcCCCeEEEEECCcc----------cEEE
Confidence            444 45667899999999999999999433 333456789999  799999999999999999973          3355


Q ss_pred             eeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEE
Q 004290          142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  221 (763)
Q Consensus       142 ~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  221 (763)
                      .+.. .....++++++++..++++....+.+.++|.++.+...           .+   ..+..   . .......+.++
T Consensus        73 ~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~-----------~I---~~~~~---~-~~~~~~Rv~aI  133 (369)
T PF02239_consen   73 TIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK-----------TI---PTGGM---P-VDGPESRVAAI  133 (369)
T ss_dssp             EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEE-----------EE---E--EE-----TTTS---EEEE
T ss_pred             EEec-CCCcceEEEcCCCCEEEEEecCCCceeEecccccccee-----------ec---ccccc---c-ccccCCCceeE
Confidence            5653 44578899999554344455578999999998876331           00   00000   0 00023456777


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CC
Q 004290          222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SG  300 (763)
Q Consensus       222 ~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d  300 (763)
                      ..+|.++.++++--.-+.|.+.|....+.+..           ...         ..........|+|+++|++++. .+
T Consensus       134 v~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-----------~~i---------~~g~~~~D~~~dpdgry~~va~~~s  193 (369)
T PF02239_consen  134 VASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-----------TTI---------KVGRFPHDGGFDPDGRYFLVAANGS  193 (369)
T ss_dssp             EE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-----------EEE---------E--TTEEEEEE-TTSSEEEEEEGGG
T ss_pred             EecCCCCEEEEEEccCCeEEEEEeccccccce-----------eee---------cccccccccccCcccceeeeccccc
Confidence            77886443444444458888888776432210           000         0011356788999999987765 47


Q ss_pred             CeEEEEECCCCC
Q 004290          301 EHVYLMDVNHAG  312 (763)
Q Consensus       301 ~~i~iwd~~~~~  312 (763)
                      +.|-++|..+++
T Consensus       194 n~i~viD~~~~k  205 (369)
T PF02239_consen  194 NKIAVIDTKTGK  205 (369)
T ss_dssp             TEEEEEETTTTE
T ss_pred             ceeEEEeeccce
Confidence            899999998854

...

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.43  E-value=3.9e-12  Score=121.24  Aligned_cols=206  Identities=15%  Similarity=0.163  Sum_probs=152.1

Q ss_pred             ccccccccchhhhhc-cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeC-CCCe--EEEEEccCCCCceEEEE
Q 004290           25 DVNHSLQMHSSLVRR-LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSRK--LLHSIETGHSANVFCTK  100 (763)
Q Consensus        25 ~~~~~~~~~~~~~~~-~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~-~~~~--~~~~~~~~h~~~V~~v~  100 (763)
                      .-++.+.|+...-.. ++..++|+.|...|++|+|+|..+.|++|+.|....||.. ..++  ....+ ..+....+++.
T Consensus        29 ~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~  107 (361)
T KOG1523|consen   29 PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVK  107 (361)
T ss_pred             cCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEe
Confidence            346788999887777 8999999999999999999999999999999999999998 4443  33334 46788999999


Q ss_pred             EeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 004290          101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (763)
Q Consensus       101 ~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~  180 (763)
                      |+|.  ++.|++|+.-+.|.||-++..+.-      +-..+.-+.+...|.++.|+| ++-++++|+.|+.+++|..--.
T Consensus       108 WsP~--enkFAVgSgar~isVcy~E~ENdW------WVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK  178 (361)
T KOG1523|consen  108 WSPK--ENKFAVGSGARLISVCYYEQENDW------WVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIK  178 (361)
T ss_pred             ecCc--CceEEeccCccEEEEEEEecccce------ehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeee
Confidence            9999  799999999999999999863211      111223455778899999999 6689999999999999964322


Q ss_pred             CCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC
Q 004290          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (763)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~  248 (763)
                      ..-...       ...-|+.+...-..+.+.....+.+..+.|+|+ |+.|+-.+.|..+.+-|....
T Consensus       179 ~Vdekp-------ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s-G~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  179 GVDEKP-------APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS-GNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             ccccCC-------CCCCCccCCcHHHHHHhhccCCCceeeeEeCCC-CCEeeEecCCCceEEeecCCC
Confidence            110000       000011111001112222245678999999997 789999999999999988754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=4.2e-11  Score=130.36  Aligned_cols=234  Identities=14%  Similarity=0.099  Sum_probs=143.0

Q ss_pred             cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeC
Q 004290           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D---~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~  104 (763)
                      ..|.+++..   ....+.+..|...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... + ....+...+.+|+|+
T Consensus       184 ~~l~i~D~~---g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l-~~~~g~~~~~~~SpD  258 (433)
T PRK04922        184 YALQVADSD---GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-V-ASFRGINGAPSFSPD  258 (433)
T ss_pred             EEEEEECCC---CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-e-ccCCCCccCceECCC
Confidence            345555532   23345566777889999999999999987743   469999998876543 2 234445568899999


Q ss_pred             CCCcEE-EEEeCCC--cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-CCCc--EEEEECC
Q 004290          105 TSDELV-VSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGT--LRQHDFR  178 (763)
Q Consensus       105 ~~~~~l-~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-~dg~--i~iwd~~  178 (763)
                        |+.| ++.+.++  .|++||+..+.           ...+..+.......+|+|++ ..|+.++ .+|.  |+++|+.
T Consensus       259 --G~~l~~~~s~~g~~~Iy~~d~~~g~-----------~~~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~  324 (433)
T PRK04922        259 --GRRLALTLSRDGNPEIYVMDLGSRQ-----------LTRLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAAS  324 (433)
T ss_pred             --CCEEEEEEeCCCCceEEEEECCCCC-----------eEECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECC
Confidence              5655 4556665  48999987632           33344455556778999954 5555444 4555  5666665


Q ss_pred             CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC---cEEEEeCCCCCCCcccC
Q 004290          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQ  255 (763)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg---~i~iwd~~~~~~~~~~~  255 (763)
                      +++..                       .+..   ........+|+|+ +++|+..+.++   .|.+||+.+++.. .+ 
T Consensus       325 ~g~~~-----------------------~lt~---~g~~~~~~~~SpD-G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L-  375 (433)
T PRK04922        325 GGSAE-----------------------RLTF---QGNYNARASVSPD-GKKIAMVHGSGGQYRIAVMDLSTGSVR-TL-  375 (433)
T ss_pred             CCCeE-----------------------Eeec---CCCCccCEEECCC-CCEEEEEECCCCceeEEEEECCCCCeE-EC-
Confidence            54311                       1110   0112346799997 56776655433   5999999876422 11 


Q ss_pred             CCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCeEEEEECCCCCccceEeecCCCCeeeeecc
Q 004290          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (763)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (763)
                                  .      .+.   ......|+|||++|+..+.   .+.|+++++.... ..............+|+|
T Consensus       376 ------------t------~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~-~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        376 ------------T------PGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV-RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ------------C------CCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEEcccCCCCCCCCccCC
Confidence                        0      011   1345689999999887776   3468888886532 222222233444555655

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=1.9e-10  Score=124.70  Aligned_cols=175  Identities=13%  Similarity=0.152  Sum_probs=106.5

Q ss_pred             cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---CCcEEEEECCCCCCCCCCCCCCCCceeeecccCc
Q 004290           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (763)
Q Consensus        73 ~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (763)
                      .|.+||....... .+ ..+...+.+.+|+|+  |+.|+..+.   +..|.+|++..+...        .+..+   .+.
T Consensus       180 ~l~~~d~dg~~~~-~l-t~~~~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~~--------~l~~~---~~~  244 (429)
T PRK03629        180 ELRVSDYDGYNQF-VV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAVR--------QVASF---PRH  244 (429)
T ss_pred             eEEEEcCCCCCCE-Ee-ecCCCceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCeE--------EccCC---CCC
Confidence            6889998765433 33 346678999999999  788876542   457999999764311        12223   333


Q ss_pred             eeEEEEecCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC
Q 004290          150 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (763)
Q Consensus       150 v~~l~~sp~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  227 (763)
                      +..++|+|++..++++.+.+|  .|++||+.+++..                       .+.   .+...+....|+|+ 
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-----------------------~lt---~~~~~~~~~~wSPD-  297 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-----------------------QVT---DGRSNNTEPTWFPD-  297 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-----------------------Ecc---CCCCCcCceEECCC-
Confidence            556899996544555555555  4888998776421                       111   11224567899998 


Q ss_pred             CcEEEEEeC-CCcEEEE--eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---C
Q 004290          228 PHLLLVGGS-DAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---E  301 (763)
Q Consensus       228 ~~~l~sgs~-Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d---~  301 (763)
                      ++.|+..+. ++...||  |+.++... .+                  ...+.   ......|+|||++|+..+.+   .
T Consensus       298 G~~I~f~s~~~g~~~Iy~~d~~~g~~~-~l------------------t~~~~---~~~~~~~SpDG~~Ia~~~~~~g~~  355 (429)
T PRK03629        298 SQNLAYTSDQAGRPQVYKVNINGGAPQ-RI------------------TWEGS---QNQDADVSSDGKFMVMVSSNGGQQ  355 (429)
T ss_pred             CCEEEEEeCCCCCceEEEEECCCCCeE-Ee------------------ecCCC---CccCEEECCCCCEEEEEEccCCCc
Confidence            566665554 4555555  55543211 00                  00111   24568899999999877653   3


Q ss_pred             eEEEEECCCC
Q 004290          302 HVYLMDVNHA  311 (763)
Q Consensus       302 ~i~iwd~~~~  311 (763)
                      .|++||+.++
T Consensus       356 ~I~~~dl~~g  365 (429)
T PRK03629        356 HIAKQDLATG  365 (429)
T ss_pred             eEEEEECCCC
Confidence            5777777653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.37  E-value=1.5e-12  Score=129.80  Aligned_cols=214  Identities=15%  Similarity=0.188  Sum_probs=165.8

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~  131 (763)
                      +-..+.++.+|.+|+.|+..|.|-.+|+.++.....+  .-...|.++.|..+  .++||++ ....++|||-.-     
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LHn--eq~~AVA-QK~y~yvYD~~G-----  200 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLHN--EQFFAVA-QKKYVYVYDNNG-----  200 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhcc--hHHHHhh-hhceEEEecCCC-----
Confidence            4467889999999999999999999999999988887  34567999999988  4566555 578899999773     


Q ss_pred             CCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCC
Q 004290          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (763)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (763)
                            ..++.++.| ..|..|.|-| ...+|++++..|.++.-|+.+++.+..                         +
T Consensus       201 ------tElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~-------------------------~  247 (545)
T KOG1272|consen  201 ------TELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVAS-------------------------I  247 (545)
T ss_pred             ------cEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHH-------------------------H
Confidence                  235666644 4699999999 558899999999999999999875421                         1


Q ss_pred             CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC
Q 004290          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (763)
Q Consensus       212 ~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg  291 (763)
                      ....+.+..++-+|.+ ..+-+|...|+|.+|...+..++..+                    --|.+ +|.+|++.++|
T Consensus       248 ~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePLvKi--------------------LcH~g-~V~siAv~~~G  305 (545)
T KOG1272|consen  248 RTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLVKI--------------------LCHRG-PVSSIAVDRGG  305 (545)
T ss_pred             HccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchHHHH--------------------HhcCC-CcceEEECCCC
Confidence            1234566778888974 68899999999999999887655333                    11444 69999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeecc
Q 004290          292 EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (763)
Q Consensus       292 ~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (763)
                      +|+++++.|..++|||++.......... ......+++|.
T Consensus       306 ~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq  344 (545)
T KOG1272|consen  306 RYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ  344 (545)
T ss_pred             cEEeecccccceeEeeeccccccceeec-CCCcccccccc
Confidence            9999999999999999999664433333 44444455543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1.3e-10  Score=126.69  Aligned_cols=224  Identities=11%  Similarity=0.081  Sum_probs=141.1

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeC---CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEE-EEEeCC
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD  116 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~---D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l-~s~s~d  116 (763)
                      ...+.+..|...|.+.+|+|||+.|+..+.   +..|.+||+.+++... + ..+.+.+.+.+|+|+  |+.| ++.+.+
T Consensus       192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l-~~~~g~~~~~~~SPD--G~~la~~~~~~  267 (435)
T PRK05137        192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-V-GNFPGMTFAPRFSPD--GRKVVMSLSQG  267 (435)
T ss_pred             CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-e-ecCCCcccCcEECCC--CCEEEEEEecC
Confidence            344567788889999999999999987764   4689999999886543 3 355667889999999  5655 466666


Q ss_pred             Cc--EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-CCC--cEEEEECCCCCCCCCCCCCCc
Q 004290          117 AE--VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDG--TLRQHDFRQGSSCPPAGSSHQ  191 (763)
Q Consensus       117 g~--I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~  191 (763)
                      +.  |.+||+..+.           ...+..+........|+|+ ++.|+..+ .+|  .|+++|+..++.         
T Consensus       268 g~~~Iy~~d~~~~~-----------~~~Lt~~~~~~~~~~~spD-G~~i~f~s~~~g~~~Iy~~d~~g~~~---------  326 (435)
T PRK05137        268 GNTDIYTMDLRSGT-----------TTRLTDSPAIDTSPSYSPD-GSQIVFESDRSGSPQLYVMNADGSNP---------  326 (435)
T ss_pred             CCceEEEEECCCCc-----------eEEccCCCCccCceeEcCC-CCEEEEEECCCCCCeEEEEECCCCCe---------
Confidence            66  6667776532           3445555666778899995 45555544 344  577778765431         


Q ss_pred             ccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---CcEEEEeCCCCCCCcccCCCCCCCCcccccc
Q 004290          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  268 (763)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  268 (763)
                                    ..+..   ....+....|+|+ ++.|+....+   ..|.+||+..+.. ..             +.
T Consensus       327 --------------~~lt~---~~~~~~~~~~Spd-G~~ia~~~~~~~~~~i~~~d~~~~~~-~~-------------lt  374 (435)
T PRK05137        327 --------------RRISF---GGGRYSTPVWSPR-GDLIAFTKQGGGQFSIGVMKPDGSGE-RI-------------LT  374 (435)
T ss_pred             --------------EEeec---CCCcccCeEECCC-CCEEEEEEcCCCceEEEEEECCCCce-Ee-------------cc
Confidence                          11111   1223456789998 5677665543   3577888754321 10             00


Q ss_pred             cccccCCCCCccceeEEEEcCCCCEEEEEeCC------CeEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004290          269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (763)
Q Consensus       269 ~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (763)
                            .+.   .+..+.|+|||++|+..+.+      ..++++++..+... .. .........+|+|.
T Consensus       375 ------~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l-~~~~~~~~p~Wsp~  433 (435)
T PRK05137        375 ------SGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER-EV-PTPGDASDPAWSPL  433 (435)
T ss_pred             ------CCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE-Ec-cCCCCccCcccCCC
Confidence                  111   25668899999998876652      36888888764432 22 12223444556653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.35  E-value=1.7e-11  Score=124.49  Aligned_cols=181  Identities=18%  Similarity=0.266  Sum_probs=127.6

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEEc---cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC----
Q 004290           60 SKGSLLISGSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL----  132 (763)
Q Consensus        60 p~g~~Lasgs~D~~v~iWd~~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~----  132 (763)
                      |.+--|+.|-.-|.|.+.|....+..+.+.   .-....|+|++|.|.. ..+++.+-.+|.+.++|....-+...    
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~-~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGS-DSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCC-CceEEEEEecCceEEeeccccccCCCCccc
Confidence            456667788788899998876533222110   1134789999999986 67888888899999998753211100    


Q ss_pred             --------------CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290          133 --------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (763)
Q Consensus       133 --------------~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  198 (763)
                                    ......|+..+.--.+.|+..+|+| ++.+||+.+.||.+||||..+.+..               
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLl---------------  325 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELL---------------  325 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHH---------------
Confidence                          0011133444444466899999999 7899999999999999999887632               


Q ss_pred             ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (763)
                                .....--+.+.|++|+|| +++|++|+.|..|.||.+...+.+..                    .+||.
T Consensus       326 ----------g~mkSYFGGLLCvcWSPD-GKyIvtGGEDDLVtVwSf~erRVVAR--------------------GqGHk  374 (636)
T KOG2394|consen  326 ----------GVMKSYFGGLLCVCWSPD-GKYIVTGGEDDLVTVWSFEERRVVAR--------------------GQGHK  374 (636)
T ss_pred             ----------HHHHhhccceEEEEEcCC-ccEEEecCCcceEEEEEeccceEEEe--------------------ccccc
Confidence                      011112356899999998 79999999999999999987654432                    15676


Q ss_pred             ccceeEEEEcC
Q 004290          279 SLHLTHVTFSP  289 (763)
Q Consensus       279 ~~~i~~v~~sp  289 (763)
                      + +|+.|+|.|
T Consensus       375 S-WVs~VaFDp  384 (636)
T KOG2394|consen  375 S-WVSVVAFDP  384 (636)
T ss_pred             c-ceeeEeecc
Confidence            6 688888873

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=5.8e-11  Score=115.05  Aligned_cols=197  Identities=16%  Similarity=0.204  Sum_probs=137.2

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      +-.+..++|++.-.-+|++..|-.|++||-.. ++...+.......|+|++|-|.+ +.-|+.|+.. -|.||.......
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPls-aselavgCr~-gIciW~~s~tln  174 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLS-ASELAVGCRA-GICIWSDSRTLN  174 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCC-cceeeeeecc-eeEEEEcCcccc
Confidence            35688999999666788999999999999765 55555544556789999999997 7788888865 589998874221


Q ss_pred             CCC--CCCCCCC--ceeeecccCceeEEEEecCCCCEEEEEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          130 RGL--DDNAITP--SALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       130 ~~~--~~~~~~~--~~~~~~h~~~v~~l~~sp~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                      ...  ......+  +....+| .+|++|.|.+ ++..+++++. |..|.|||..++...+..                  
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~------------------  234 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLI------------------  234 (445)
T ss_pred             cccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCccccc------------------
Confidence            110  0001111  2223445 6899999999 4567777764 678999999998744211                  


Q ss_pred             eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC-CCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (763)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  283 (763)
                             +...+.+.-+.|+|+ +.+|+++.-|+..++|... +.....             ..         -..+.|.
T Consensus       235 -------~~glgg~slLkwSPd-gd~lfaAt~davfrlw~e~q~wt~er-------------w~---------lgsgrvq  284 (445)
T KOG2139|consen  235 -------PKGLGGFSLLKWSPD-GDVLFAATCDAVFRLWQENQSWTKER-------------WI---------LGSGRVQ  284 (445)
T ss_pred             -------ccCCCceeeEEEcCC-CCEEEEecccceeeeehhcccceecc-------------ee---------ccCCcee
Confidence                   123456788999998 7899999999999999543 322110             00         1111599


Q ss_pred             EEEEcCCCCEEEEEeC
Q 004290          284 HVTFSPNGEEVLLSYS  299 (763)
Q Consensus       284 ~v~~spdg~~l~~~s~  299 (763)
                      ..+|+|+|++|+.+..
T Consensus       285 tacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  285 TACWSPCGSFLLFACS  300 (445)
T ss_pred             eeeecCCCCEEEEEEc
Confidence            9999999998776654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=1.8e-10  Score=124.80  Aligned_cols=222  Identities=11%  Similarity=0.076  Sum_probs=136.0

Q ss_pred             eeeccccCceEEEEeCCCCCEEEEEe---CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEE-eCCC--
Q 004290           44 RELEGHQGCVNAISWNSKGSLLISGS---DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-AGDA--  117 (763)
Q Consensus        44 ~~l~gH~~~V~~l~fsp~g~~Lasgs---~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~-s~dg--  117 (763)
                      +.+..+...+.+.+|||||+.||..+   .+..|.+||+.+++.....  ...+.+....|+|+  |+.|+.. +.++  
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--~~~~~~~~~~~SPD--G~~La~~~~~~g~~  267 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPD--GSKLAFALSKTGSL  267 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc--CCCCCcCCeEECCC--CCEEEEEEcCCCCc
Confidence            34455667899999999999998654   2457999999887643322  23334557899999  6766654 4455  


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-CCCcEEEE--ECCCCCCCCCCCCCCcccc
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQH--DFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iw--d~~~~~~~~~~~~~~~~~~  194 (763)
                      .|.+||+..+.           ...+..+...+....|+|+ ++.|+..+ .++...+|  |+.+++.            
T Consensus       268 ~I~~~d~~tg~-----------~~~lt~~~~~~~~~~wSPD-G~~I~f~s~~~g~~~Iy~~d~~~g~~------------  323 (429)
T PRK03629        268 NLYVMDLASGQ-----------IRQVTDGRSNNTEPTWFPD-SQNLAYTSDQAGRPQVYKVNINGGAP------------  323 (429)
T ss_pred             EEEEEECCCCC-----------EEEccCCCCCcCceEECCC-CCEEEEEeCCCCCceEEEEECCCCCe------------
Confidence            48889987632           2333344456788999995 45554444 34554555  5544421            


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---CcEEEEeCCCCCCCcccCCCCCCCCccccccccc
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  271 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (763)
                                 ..+..   .........|+|+ +++|+..+.+   ..|.+||+.++... .+             .   
T Consensus       324 -----------~~lt~---~~~~~~~~~~SpD-G~~Ia~~~~~~g~~~I~~~dl~~g~~~-~L-------------t---  371 (429)
T PRK03629        324 -----------QRITW---EGSQNQDADVSSD-GKFMVMVSSNGGQQHIAKQDLATGGVQ-VL-------------T---  371 (429)
T ss_pred             -----------EEeec---CCCCccCEEECCC-CCEEEEEEccCCCceEEEEECCCCCeE-Ee-------------C---
Confidence                       11110   1122446789998 5677665443   35888998876421 10             0   


Q ss_pred             ccCCCCCccceeEEEEcCCCCEEEEEeCCC---eEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004290          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (763)
Q Consensus       272 ~~~~g~~~~~i~~v~~spdg~~l~~~s~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (763)
                         ...   ......|+|||++|+.++.++   .++++++.. ........+.......+|+|.
T Consensus       372 ---~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        372 ---DTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             ---CCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CCeEECccCCCCcCCcccCCC
Confidence               001   133567999999999998865   377888855 333333334445566677763

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=2.1e-10  Score=124.49  Aligned_cols=227  Identities=10%  Similarity=0.070  Sum_probs=139.8

Q ss_pred             cceeeccccCceEEEEeCCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEE-EEeCCC
Q 004290           42 QERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA  117 (763)
Q Consensus        42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D---~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~-s~s~dg  117 (763)
                      ..+.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... + ....+.+.+..|+|+  ++.|+ +.+.++
T Consensus       187 ~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SPD--G~~la~~~~~~g  262 (427)
T PRK02889        187 NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSPD--GRTLAVALSRDG  262 (427)
T ss_pred             CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCC--CCEEEEEEccCC
Confidence            334556678889999999999999877643   459999999887543 2 233455678999999  66665 667888


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECC--CCCCCCCCCCCCcccce
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QGSSCPPAGSSHQECRN  195 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~  195 (763)
                      ...||.+....+         ....+..+........|+|++..++++...+|...+|.+.  .++.             
T Consensus       263 ~~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-------------  320 (427)
T PRK02889        263 NSQIYTVNADGS---------GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-------------  320 (427)
T ss_pred             CceEEEEECCCC---------CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-------------
Confidence            877777653211         1334444555567789999554444444445666777654  2220             


Q ss_pred             EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC---cEEEEeCCCCCCCcccCCCCCCCCcccccccccc
Q 004290          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (763)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (763)
                                ..+.. .+  ......+|+|+ +++|+..+.++   .|.+||+.+++... +             .    
T Consensus       321 ----------~~lt~-~g--~~~~~~~~SpD-G~~Ia~~s~~~g~~~I~v~d~~~g~~~~-l-------------t----  368 (427)
T PRK02889        321 ----------QRVTF-TG--SYNTSPRISPD-GKLLAYISRVGGAFKLYVQDLATGQVTA-L-------------T----  368 (427)
T ss_pred             ----------EEEec-CC--CCcCceEECCC-CCEEEEEEccCCcEEEEEEECCCCCeEE-c-------------c----
Confidence                      01110 01  12235689997 67877666554   59999998764211 0             0    


Q ss_pred             cCCCCCccceeEEEEcCCCCEEEEEeCCC---eEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004290          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (763)
Q Consensus       273 ~~~g~~~~~i~~v~~spdg~~l~~~s~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (763)
                        .+.   ......|+|||++|+.++.++   .+++.++.. ........+.......+|+|.
T Consensus       369 --~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        369 --DTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSSDG-RIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             --CCC---CccCceECCCCCEEEEEEecCCCEEEEEEECCC-CceEEeecCCCCCCCCccCCC
Confidence              000   135578999999999887643   466666643 333333333445566677764

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.32  E-value=2.6e-10  Score=109.01  Aligned_cols=180  Identities=9%  Similarity=0.175  Sum_probs=129.4

Q ss_pred             CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeeccc--Cc
Q 004290           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT--RR  149 (763)
Q Consensus        72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~--~~  149 (763)
                      ..|.|||=...+++.++  ....+|.++.+.++    .|+..- .+.|+||.+...-         +.++.+....  ..
T Consensus        75 NkviIWDD~k~~~i~el--~f~~~I~~V~l~r~----riVvvl-~~~I~VytF~~n~---------k~l~~~et~~NPkG  138 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIEL--SFNSEIKAVKLRRD----RIVVVL-ENKIYVYTFPDNP---------KLLHVIETRSNPKG  138 (346)
T ss_pred             ceEEEEecccCcEEEEE--EeccceeeEEEcCC----eEEEEe-cCeEEEEEcCCCh---------hheeeeecccCCCc
Confidence            46999997777788777  46789999999987    444443 6789999998421         2233333222  22


Q ss_pred             eeEEEEecCCCCEEEE-EeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCC
Q 004290          150 VKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP  228 (763)
Q Consensus       150 v~~l~~sp~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  228 (763)
                      +.++.-+. +..+||. |-.-|.|+|-|+...+.-                       .-...+.|...|.|++++-+ |
T Consensus       139 lC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~~~~-----------------------~p~~I~AH~s~Iacv~Ln~~-G  193 (346)
T KOG2111|consen  139 LCSLCPTS-NKSLLAFPGFKTGQVQIVDLASTKPN-----------------------APSIINAHDSDIACVALNLQ-G  193 (346)
T ss_pred             eEeecCCC-CceEEEcCCCccceEEEEEhhhcCcC-----------------------CceEEEcccCceeEEEEcCC-c
Confidence            33333222 2234433 334689999998876521                       01122468889999999997 7


Q ss_pred             cEEEEEeCCCc-EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 004290          229 HLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD  307 (763)
Q Consensus       229 ~~l~sgs~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd  307 (763)
                      .++|++|..|+ |||||..++..+.++.                   +|.....|.+++|||++.+|+++|..|+|+||.
T Consensus       194 t~vATaStkGTLIRIFdt~~g~~l~E~R-------------------RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~  254 (346)
T KOG2111|consen  194 TLVATASTKGTLIRIFDTEDGTLLQELR-------------------RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS  254 (346)
T ss_pred             cEEEEeccCcEEEEEEEcCCCcEeeeee-------------------cCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence            89999999998 8999999998776553                   344444699999999999999999999999999


Q ss_pred             CCCC
Q 004290          308 VNHA  311 (763)
Q Consensus       308 ~~~~  311 (763)
                      +...
T Consensus       255 l~~~  258 (346)
T KOG2111|consen  255 LRDT  258 (346)
T ss_pred             eecC
Confidence            9874

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.31  E-value=2.4e-11  Score=123.18  Aligned_cols=202  Identities=15%  Similarity=0.182  Sum_probs=140.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCcee
Q 004290           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL  142 (763)
Q Consensus        63 ~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  142 (763)
                      ..|+.++.||.+.|.+- .++.-..+ ..|.+.|.+-.|+|+  |.-|++++.||.|++|.-.-           -...+
T Consensus        76 d~~~i~s~DGkf~il~k-~~rVE~sv-~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrsG-----------MLRSt  140 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNK-SARVERSI-SAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRSG-----------MLRST  140 (737)
T ss_pred             ceEEEEcCCceEEEecc-cchhhhhh-hhhhhhhhhcccCCC--CceeeeecCCceEEEEeccc-----------hHHHH
Confidence            57888899999999873 45555566 789999999999999  79999999999999998652           12334


Q ss_pred             eecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEE
Q 004290          143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD  222 (763)
Q Consensus       143 ~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  222 (763)
                      +.....+|+|++|.|+..+.+++.+  +.+.|=-+.....            .+-             -..|.+-|.++.
T Consensus       141 l~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k------------~i~-------------WkAHDGiiL~~~  193 (737)
T KOG1524|consen  141 VVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSK------------IIR-------------WRAHDGLVLSLS  193 (737)
T ss_pred             HhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccc------------eeE-------------EeccCcEEEEee
Confidence            4556789999999997777776655  4555544433221            111             235778899999


Q ss_pred             EeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCe
Q 004290          223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH  302 (763)
Q Consensus       223 ~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~  302 (763)
                      |+|. .+++++|+.|...+|||........+                     ..|.. +|++|+|.|+ +.++.++ -++
T Consensus       194 W~~~-s~lI~sgGED~kfKvWD~~G~~Lf~S---------------------~~~ey-~ITSva~npd-~~~~v~S-~nt  248 (737)
T KOG1524|consen  194 WSTQ-SNIIASGGEDFRFKIWDAQGANLFTS---------------------AAEEY-AITSVAFNPE-KDYLLWS-YNT  248 (737)
T ss_pred             cCcc-ccceeecCCceeEEeecccCcccccC---------------------Chhcc-ceeeeeeccc-cceeeee-eee
Confidence            9997 68999999999999999864321111                     11333 6999999999 4344443 334


Q ss_pred             EEEEECCCCCccceEeecCCCCeeeeeccCCCCcccCCCC
Q 004290          303 VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI  342 (763)
Q Consensus       303 i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  342 (763)
                      +++=..+           .+.+-.++|+|++..++.....
T Consensus       249 ~R~~~p~-----------~GSifnlsWS~DGTQ~a~gt~~  277 (737)
T KOG1524|consen  249 ARFSSPR-----------VGSIFNLSWSADGTQATCGTST  277 (737)
T ss_pred             eeecCCC-----------ccceEEEEEcCCCceeeccccC
Confidence            4422222           2345568899987776555443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=9.2e-11  Score=115.05  Aligned_cols=231  Identities=11%  Similarity=0.095  Sum_probs=155.0

Q ss_pred             ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe----EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC--CcEE
Q 004290           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AEVR  120 (763)
Q Consensus        47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~----~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d--g~I~  120 (763)
                      .+-++.|..++.. || .|++|-.+|.+.+|..+.+.    .+..+ ..+ ..+..|.-+|.. ..++++|+..  ..++
T Consensus       102 ~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~l-a~g-~g~~~~r~~~~~-p~Iva~GGke~~n~lk  176 (412)
T KOG3881|consen  102 SLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKL-ATG-PGLYDVRQTDTD-PYIVATGGKENINELK  176 (412)
T ss_pred             ccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceee-ecC-CceeeeccCCCC-CceEecCchhccccee
Confidence            3344555555543 33 57778888999999988432    22333 222 567778777764 5678889998  8899


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeec--ccCceeEEEEecCC-CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQC--HTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  197 (763)
                      |||+.... +.+....  +-...-+  -.-.++++.|-+.. ...|++++.-+.+++||.+.+..+              
T Consensus       177 iwdle~~~-qiw~aKN--vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP--------------  239 (412)
T KOG3881|consen  177 IWDLEQSK-QIWSAKN--VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP--------------  239 (412)
T ss_pred             eeecccce-eeeeccC--CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc--------------
Confidence            99999641 1110000  0000000  12346778888731 578999999999999999976533              


Q ss_pred             EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004290          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (763)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (763)
                                +..+.-...+++++...|. ++.+++|..-+.+..||++.+..+....                   .|.
T Consensus       240 ----------V~~fd~~E~~is~~~l~p~-gn~Iy~gn~~g~l~~FD~r~~kl~g~~~-------------------kg~  289 (412)
T KOG3881|consen  240 ----------VAQFDFLENPISSTGLTPS-GNFIYTGNTKGQLAKFDLRGGKLLGCGL-------------------KGI  289 (412)
T ss_pred             ----------eeEeccccCcceeeeecCC-CcEEEEecccchhheecccCceeecccc-------------------CCc
Confidence                      3333334668999999997 7899999999999999999886543210                   223


Q ss_pred             CccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeecc
Q 004290          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (763)
Q Consensus       278 ~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (763)
                      .+ .|++|..+|.+++|++++-|..|+|+|+.+.+.....|. ....+.+-+.+
T Consensus       290 tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~  341 (412)
T KOG3881|consen  290 TG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRD  341 (412)
T ss_pred             cC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecC
Confidence            33 599999999999999999999999999999443333333 33344444444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=3.3e-10  Score=123.38  Aligned_cols=176  Identities=9%  Similarity=0.070  Sum_probs=111.0

Q ss_pred             CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---CcEEEEECCCCCCCCCCCCCCCCceeeecccC
Q 004290           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (763)
Q Consensus        72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (763)
                      ..|.+||..... .+.+ ..+...+.+.+|+|+  ++.|+..+.+   ..|.+||+..+.           ...+..+.+
T Consensus       184 ~~l~i~D~~g~~-~~~l-t~~~~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~-----------~~~l~~~~g  248 (433)
T PRK04922        184 YALQVADSDGYN-PQTI-LRSAEPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQ-----------RELVASFRG  248 (433)
T ss_pred             EEEEEECCCCCC-ceEe-ecCCCccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCC-----------EEEeccCCC
Confidence            468999986443 3445 456778999999999  7888877643   469999997643           222333344


Q ss_pred             ceeEEEEecCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004290          149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (763)
Q Consensus       149 ~v~~l~~sp~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~  226 (763)
                      ....++|+|++..++++.+.+|  .|++||+.+++..                       .+.   .+.......+|+|+
T Consensus       249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-----------------------~lt---~~~~~~~~~~~spD  302 (433)
T PRK04922        249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-----------------------RLT---NHFGIDTEPTWAPD  302 (433)
T ss_pred             CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-----------------------ECc---cCCCCccceEECCC
Confidence            5567899996655666666666  4889998776421                       111   11122356789998


Q ss_pred             CCcEEEEEe-CCCc--EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC--
Q 004290          227 RPHLLLVGG-SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--  301 (763)
Q Consensus       227 ~~~~l~sgs-~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~--  301 (763)
                       ++.|+..+ .++.  |.++|+.+++... +                  ...+.   ....++|+|||++|+..+.++  
T Consensus       303 -G~~l~f~sd~~g~~~iy~~dl~~g~~~~-l------------------t~~g~---~~~~~~~SpDG~~Ia~~~~~~~~  359 (433)
T PRK04922        303 -GKSIYFTSDRGGRPQIYRVAASGGSAER-L------------------TFQGN---YNARASVSPDGKKIAMVHGSGGQ  359 (433)
T ss_pred             -CCEEEEEECCCCCceEEEEECCCCCeEE-e------------------ecCCC---CccCEEECCCCCEEEEEECCCCc
Confidence             56666555 4455  5556665543110 0                  00111   244689999999998776533  


Q ss_pred             -eEEEEECCCC
Q 004290          302 -HVYLMDVNHA  311 (763)
Q Consensus       302 -~i~iwd~~~~  311 (763)
                       .|++||+.++
T Consensus       360 ~~I~v~d~~~g  370 (433)
T PRK04922        360 YRIAVMDLSTG  370 (433)
T ss_pred             eeEEEEECCCC
Confidence             6888888663

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=1e-09  Score=119.19  Aligned_cols=176  Identities=12%  Similarity=0.081  Sum_probs=107.6

Q ss_pred             CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---CcEEEEECCCCCCCCCCCCCCCCceeeecccC
Q 004290           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (763)
Q Consensus        72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (763)
                      ..|.+||.. +.....+ ..+...+.+.+|+|+  ++.|+..+.+   ..|.+||+..+.           ...+....+
T Consensus       176 ~~L~~~D~d-G~~~~~l-~~~~~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~-----------~~~l~~~~g  240 (427)
T PRK02889        176 YQLQISDAD-GQNAQSA-LSSPEPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGR-----------RRVVANFKG  240 (427)
T ss_pred             cEEEEECCC-CCCceEe-ccCCCCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCC-----------EEEeecCCC
Confidence            457777764 4444444 467778999999999  7888877643   359999998643           222333445


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECC--CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004290          149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (763)
Q Consensus       149 ~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~  226 (763)
                      .+...+|+|++..++++.+.+|...+|.+.  .+..                       ..+..   +........|+|+
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-----------------------~~lt~---~~~~~~~~~wSpD  294 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-----------------------RRLTQ---SSGIDTEPFFSPD  294 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCCc-----------------------EECCC---CCCCCcCeEEcCC
Confidence            567889999655555677888887776543  3221                       01111   1123456789998


Q ss_pred             CCcEEEEEe-CCCcEEEEeCC--CCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC--
Q 004290          227 RPHLLLVGG-SDAFARLYDRR--MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--  301 (763)
Q Consensus       227 ~~~~l~sgs-~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~--  301 (763)
                       ++.|+..+ .++...||.+.  .+... .          + .+       .+.   .....+|+|||++|+..+.++  
T Consensus       295 -G~~l~f~s~~~g~~~Iy~~~~~~g~~~-~----------l-t~-------~g~---~~~~~~~SpDG~~Ia~~s~~~g~  351 (427)
T PRK02889        295 -GRSIYFTSDRGGAPQIYRMPASGGAAQ-R----------V-TF-------TGS---YNTSPRISPDGKLLAYISRVGGA  351 (427)
T ss_pred             -CCEEEEEecCCCCcEEEEEECCCCceE-E----------E-ec-------CCC---CcCceEECCCCCEEEEEEccCCc
Confidence             56665444 45667777654  22110 0          0 00       111   134578999999998777643  


Q ss_pred             -eEEEEECCCC
Q 004290          302 -HVYLMDVNHA  311 (763)
Q Consensus       302 -~i~iwd~~~~  311 (763)
                       .|++||+.++
T Consensus       352 ~~I~v~d~~~g  362 (427)
T PRK02889        352 FKLYVQDLATG  362 (427)
T ss_pred             EEEEEEECCCC
Confidence             6888888764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.23  E-value=3.8e-10  Score=107.51  Aligned_cols=151  Identities=14%  Similarity=0.173  Sum_probs=99.4

Q ss_pred             EEEEEeeCCCCcEEEEEeC----------CCcEEEEECCCCCCCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEE
Q 004290           97 FCTKFVPETSDELVVSGAG----------DAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWS  165 (763)
Q Consensus        97 ~~v~~~p~~~~~~l~s~s~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s  165 (763)
                      ..+.|+|.  |++|+.-..          -+...+|.++...         .+...+. ...++|.+++|+|++..+++.
T Consensus         9 ~~~~W~~~--G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~---------~~~~~i~l~~~~~I~~~~WsP~g~~favi   77 (194)
T PF08662_consen    9 AKLHWQPS--GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN---------IPVESIELKKEGPIHDVAWSPNGNEFAVI   77 (194)
T ss_pred             EEEEeccc--CCEEEEEEEEeeccCcceEEeeEEEEEEecCC---------CccceeeccCCCceEEEEECcCCCEEEEE
Confidence            45778888  555444322          1335666664422         1233332 234579999999955443333


Q ss_pred             -EeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---CcEE
Q 004290          166 -ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFAR  241 (763)
Q Consensus       166 -~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---g~i~  241 (763)
                       |..++.|.+||++...               +..           .  ....++.+.|+|+ |++|++++.+   |.|.
T Consensus        78 ~g~~~~~v~lyd~~~~~---------------i~~-----------~--~~~~~n~i~wsP~-G~~l~~~g~~n~~G~l~  128 (194)
T PF08662_consen   78 YGSMPAKVTLYDVKGKK---------------IFS-----------F--GTQPRNTISWSPD-GRFLVLAGFGNLNGDLE  128 (194)
T ss_pred             EccCCcccEEEcCcccE---------------eEe-----------e--cCCCceEEEECCC-CCEEEEEEccCCCcEEE
Confidence             4467899999996221               111           1  1345688999997 7889888754   6699


Q ss_pred             EEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC------CCeEEEEECCC
Q 004290          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNH  310 (763)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~------d~~i~iwd~~~  310 (763)
                      +||.++.+.+.+.                     .|.  .++.++|+|||++|++++.      |+.++||+...
T Consensus       129 ~wd~~~~~~i~~~---------------------~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  129 FWDVRKKKKISTF---------------------EHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEECCCCEEeecc---------------------ccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            9999976554332                     122  3889999999999999875      78999999865

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=3.6e-10  Score=109.69  Aligned_cols=201  Identities=10%  Similarity=0.067  Sum_probs=140.3

Q ss_pred             CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEeCCCc
Q 004290           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGT  171 (763)
Q Consensus        93 ~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s~dg~  171 (763)
                      ...+..++|++.  -..++++..|-.|++||-...           +...++ .....|++|+|-|.....|+.|+. +-
T Consensus        98 ~~dlr~~aWhqH--~~~fava~nddvVriy~ksst-----------~pt~Lks~sQrnvtclawRPlsaselavgCr-~g  163 (445)
T KOG2139|consen   98 EIDLRGVAWHQH--IIAFAVATNDDVVRIYDKSST-----------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AG  163 (445)
T ss_pred             hcceeeEeechh--hhhhhhhccCcEEEEeccCCC-----------CCceecchhhcceeEEEeccCCcceeeeeec-ce
Confidence            345788999997  578999999999999998751           122222 234579999999988888888887 55


Q ss_pred             EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-CCCcEEEEeCCCCCC
Q 004290          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPP  250 (763)
Q Consensus       172 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~~~~~  250 (763)
                      |.+|......+......           ........+...++| .+|++++|+++ +..+++++ .|..|+|||..+++.
T Consensus       164 IciW~~s~tln~~r~~~-----------~~s~~~~qvl~~pgh-~pVtsmqwn~d-gt~l~tAS~gsssi~iWdpdtg~~  230 (445)
T KOG2139|consen  164 ICIWSDSRTLNANRNIR-----------MMSTHHLQVLQDPGH-NPVTSMQWNED-GTILVTASFGSSSIMIWDPDTGQK  230 (445)
T ss_pred             eEEEEcCcccccccccc-----------cccccchhheeCCCC-ceeeEEEEcCC-CCEEeecccCcceEEEEcCCCCCc
Confidence            88998776543321110           111112234444555 78999999998 56777776 467899999998764


Q ss_pred             CcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeec
Q 004290          251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT  330 (763)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  330 (763)
                      +.-.                   ..|..  .++-+.|||||.+|++++-|+..++|+................+...+|+
T Consensus       231 ~pL~-------------------~~glg--g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWs  289 (445)
T KOG2139|consen  231 IPLI-------------------PKGLG--GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWS  289 (445)
T ss_pred             cccc-------------------ccCCC--ceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeec
Confidence            3211                   11222  48899999999999999999999999766644444444444477888999


Q ss_pred             cCCCCcccCCC
Q 004290          331 PTLNGLELQPP  341 (763)
Q Consensus       331 p~~~~~~~~~~  341 (763)
                      |.+.-+-+...
T Consensus       290 pcGsfLLf~~s  300 (445)
T KOG2139|consen  290 PCGSFLLFACS  300 (445)
T ss_pred             CCCCEEEEEEc
Confidence            98777655443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=2.3e-10  Score=115.15  Aligned_cols=287  Identities=15%  Similarity=0.131  Sum_probs=193.0

Q ss_pred             CCcccccccccchhhhhccccceeeccccCceEEEEeCC--CCCEEEEEeCCCcEEEEeCC-CCeEE--EEEccCCCCce
Q 004290           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYS-SRKLL--HSIETGHSANV   96 (763)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp--~g~~Lasgs~D~~v~iWd~~-~~~~~--~~~~~~h~~~V   96 (763)
                      .+.+-++.+-+|+....+ ....-..||...|....|-|  +..-|++++.||+|++=.+. ++.+.  ..+ ..|.++|
T Consensus       158 ~SgSDD~~vv~WdW~~~~-~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl-~~h~g~v  235 (559)
T KOG1334|consen  158 ASGSDDLQVVVWDWVSGS-PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL-APHEGPV  235 (559)
T ss_pred             eccCccceEEeehhhccC-cccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec-ccccCcc
Confidence            345667888889865544 33344568999999999988  34679999999999998764 33332  333 6799999


Q ss_pred             EEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC---ceeEEEEecCCCCEEEEEeCCCcEE
Q 004290           97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASEDGTLR  173 (763)
Q Consensus        97 ~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~sp~~~~~l~s~s~dg~i~  173 (763)
                      ..++.-|++ ..-|.+++.|+.+.-+|++.....       ..+..-..+..   ..+.++..|.+...|++++.|..++
T Consensus       236 hklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa-------~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~R  307 (559)
T KOG1334|consen  236 HKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPA-------EKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFAR  307 (559)
T ss_pred             ceeeecCCC-CCcccccccccceeeeeeccCCcc-------ceeeeeccCCccceeeeeEecCCCCccccccCChhhhhh
Confidence            999999997 788999999999999999863221       11222233333   5788999998888999999999999


Q ss_pred             EEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcc
Q 004290          174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (763)
Q Consensus       174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~  253 (763)
                      +||.+.-.........+..|...+..             .....|++++|+.+++ -|+++-.|-.|+++....+.--. 
T Consensus       308 vYD~R~~~~e~~n~~~~~f~p~hl~~-------------d~~v~ITgl~Ysh~~s-ElLaSYnDe~IYLF~~~~~~G~~-  372 (559)
T KOG1334|consen  308 VYDQRRIDKEENNGVLDKFCPHHLVE-------------DDPVNITGLVYSHDGS-ELLASYNDEDIYLFNKSMGDGSE-  372 (559)
T ss_pred             hhcccchhhccccchhhhcCCccccc-------------cCcccceeEEecCCcc-ceeeeecccceEEeccccccCCC-
Confidence            99998765332222222222222211             2345789999998754 55566678889999544332100 


Q ss_pred             cCCCCCCCCcccccccccccCCCCCcc-ceeEEE-EcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeecc
Q 004290          254 CQKRMSPPPCVNYFCPMHLSEHGRSSL-HLTHVT-FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (763)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~v~-~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (763)
                       +.+..+   ...+.+...  .||.+. .|..|- |-|...|+++|+.-|.|.||+-.+++......+..+.++++--+|
T Consensus       373 -p~~~s~---~~~~~k~vY--KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP  446 (559)
T KOG1334|consen  373 -PDPSSP---REQYVKRVY--KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP  446 (559)
T ss_pred             -CCCCcc---hhhccchhh--cccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence             000000   011111111  345432 366665 468899999999999999999999776666777777788887777


Q ss_pred             CCCCcccC
Q 004290          332 TLNGLELQ  339 (763)
Q Consensus       332 ~~~~~~~~  339 (763)
                      -...++..
T Consensus       447 ~~PvLAsS  454 (559)
T KOG1334|consen  447 HLPVLASS  454 (559)
T ss_pred             CCchhhcc
Confidence            65555433

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.21  E-value=6e-10  Score=106.11  Aligned_cols=148  Identities=14%  Similarity=0.225  Sum_probs=101.7

Q ss_pred             EEEeCCCCCEEEEEeC---C-------CcEEEEeCCC-CeEEEEEccCCCCceEEEEEeeCCCCcEEEE--EeCCCcEEE
Q 004290           55 AISWNSKGSLLISGSD---D-------THINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVS--GAGDAEVRL  121 (763)
Q Consensus        55 ~l~fsp~g~~Lasgs~---D-------~~v~iWd~~~-~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s--~s~dg~I~i  121 (763)
                      .+.|+|+|++|+.-..   |       +...||-+.. +..+..+.....++|.+++|+|+  ++.|+.  |..++.|.+
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~--g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN--GNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC--CCEEEEEEccCCcccEE
Confidence            5889999987764322   1       2355555532 23344442344567999999999  566544  446789999


Q ss_pred             EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC---CCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE---DGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (763)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  198 (763)
                      ||++.           .++..+  +...++.|.|+| .++++++++.   .|.|.+||+++.+.+               
T Consensus        88 yd~~~-----------~~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i---------------  138 (194)
T PF08662_consen   88 YDVKG-----------KKIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKI---------------  138 (194)
T ss_pred             EcCcc-----------cEeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEe---------------
Confidence            99973           334554  356788999999 6688888764   467999999966532               


Q ss_pred             ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC------CCcEEEEeCC
Q 004290          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRR  246 (763)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~------Dg~i~iwd~~  246 (763)
                                ...  ....++.++|+|+ |++|+++..      |+.++||+..
T Consensus       139 ----------~~~--~~~~~t~~~WsPd-Gr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  139 ----------STF--EHSDATDVEWSPD-GRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             ----------ecc--ccCcEEEEEEcCC-CCEEEEEEeccceeccccEEEEEec
Confidence                      111  1234689999998 788888764      7889999985

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.21  E-value=5.2e-09  Score=100.28  Aligned_cols=184  Identities=20%  Similarity=0.291  Sum_probs=131.7

Q ss_pred             cccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC-CCeEEEEEccCCCCceEEEEEeeC
Q 004290           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPE  104 (763)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~-~~~~~~~~~~~h~~~V~~v~~~p~  104 (763)
                      ...++-|||...+  +++.+|. -..+|.++.+.++  +|+..-. +.|.||... +.+.++.+.. ...+=--++..|.
T Consensus        73 ~pNkviIWDD~k~--~~i~el~-f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n~k~l~~~et-~~NPkGlC~~~~~  145 (346)
T KOG2111|consen   73 PPNKVIIWDDLKE--RCIIELS-FNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDNPKLLHVIET-RSNPKGLCSLCPT  145 (346)
T ss_pred             CCceEEEEecccC--cEEEEEE-eccceeeEEEcCC--eEEEEec-CeEEEEEcCCChhheeeeec-ccCCCceEeecCC
Confidence            3578889994443  4555655 4678999999864  5666654 689999998 5566666632 1111113445555


Q ss_pred             CCCcEEEE-EeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc-EEEEECCCCCC
Q 004290          105 TSDELVVS-GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQGSS  182 (763)
Q Consensus       105 ~~~~~l~s-~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~-i~iwd~~~~~~  182 (763)
                      .+..+||. |-.-|.|+|-|+.....        .+-..+.+|...|.||+.+- .|.++||+|..|+ |||||..+++.
T Consensus       146 ~~k~~LafPg~k~GqvQi~dL~~~~~--------~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~  216 (346)
T KOG2111|consen  146 SNKSLLAFPGFKTGQVQIVDLASTKP--------NAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTL  216 (346)
T ss_pred             CCceEEEcCCCccceEEEEEhhhcCc--------CCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcE
Confidence            43455555 34569999999986321        12467789999999999998 6799999999998 89999999874


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      +              ..++.|.         ....|.+++|+|+ ..+||++|..|++.||.++...
T Consensus       217 l--------------~E~RRG~---------d~A~iy~iaFSp~-~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  217 L--------------QELRRGV---------DRADIYCIAFSPN-SSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             e--------------eeeecCC---------chheEEEEEeCCC-ccEEEEEcCCCeEEEEEeecCC
Confidence            4              2233322         3467999999997 7899999999999999998643

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.16  E-value=4.8e-11  Score=119.21  Aligned_cols=219  Identities=16%  Similarity=0.195  Sum_probs=160.2

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~  130 (763)
                      ..|.++.|-.+..++|.+-. ..+.|||- .|..++.+ ..| ..|..+.|.|.  --+|++++..|.++.-|+.++.  
T Consensus       171 Etv~Dv~~LHneq~~AVAQK-~y~yvYD~-~GtElHCl-k~~-~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~Gk--  242 (545)
T KOG1272|consen  171 ETVRDVTFLHNEQFFAVAQK-KYVYVYDN-NGTELHCL-KRH-IRVARLEFLPY--HFLLVAASEAGFLKYQDVSTGK--  242 (545)
T ss_pred             hhhhhhhhhcchHHHHhhhh-ceEEEecC-CCcEEeeh-hhc-Cchhhhcccch--hheeeecccCCceEEEeechhh--
Confidence            45777888778888887754 68999995 56777777 334 57999999999  4788899999999999999853  


Q ss_pred             CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccC
Q 004290          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (763)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (763)
                              .+..+..-.+.+..|+-+|.+ .++-+|...|+|.+|.....+++                         .-
T Consensus       243 --------lVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePL-------------------------vK  288 (545)
T KOG1272|consen  243 --------LVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPL-------------------------VK  288 (545)
T ss_pred             --------hhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchH-------------------------HH
Confidence                    366676778889999999955 67888999999999998776643                         22


Q ss_pred             CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC
Q 004290          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (763)
Q Consensus       211 ~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd  290 (763)
                      ...|.++|.+|++.+. |.|+||.+.|..++|||+|+...+.++..                      ..+...++||..
T Consensus       289 iLcH~g~V~siAv~~~-G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----------------------p~~a~~ls~Sqk  345 (545)
T KOG1272|consen  289 ILCHRGPVSSIAVDRG-GRYMATTGLDRKVKIWDLRNFYQLHTYRT----------------------PHPASNLSLSQK  345 (545)
T ss_pred             HHhcCCCcceEEECCC-CcEEeecccccceeEeeeccccccceeec----------------------CCCccccccccc
Confidence            2347889999999997 89999999999999999998754433211                      114677888876


Q ss_pred             CCEEEEEeCCCeEEEEECCCC---Cc--cceEeecCCCCeeeeeccCCCCc
Q 004290          291 GEEVLLSYSGEHVYLMDVNHA---GG--RAMRYTVGDASKIMSFTPTLNGL  336 (763)
Q Consensus       291 g~~l~~~s~d~~i~iwd~~~~---~~--~~~~~~~~~~~~~~~~~p~~~~~  336 (763)
                      |  +++.+....|.||.=...   ..  +......+..+..+.|.|.-..+
T Consensus       346 g--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvL  394 (545)
T KOG1272|consen  346 G--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVL  394 (545)
T ss_pred             c--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHee
Confidence            5  556666678999943221   11  22222224566777787754433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.16  E-value=5.3e-09  Score=114.19  Aligned_cols=203  Identities=13%  Similarity=0.089  Sum_probs=128.1

Q ss_pred             cceeeccccCceEEEEeCCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEE-EEeCCC
Q 004290           42 QERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA  117 (763)
Q Consensus        42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D---~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~-s~s~dg  117 (763)
                      ..+.+..+...+.+.+|+|||++||.++.+   ..|++||+.+++....  ..+.+.+.+++|+|+  ++.|+ +.+.++
T Consensus       181 ~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spD--g~~l~~~~~~~~  256 (417)
T TIGR02800       181 NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPD--GSKLAVSLSKDG  256 (417)
T ss_pred             CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECCC--CCEEEEEECCCC
Confidence            345566677789999999999999987653   4799999998865433  245566778999999  56554 555544


Q ss_pred             --cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-CCC--cEEEEECCCCCCCCCCCCCCcc
Q 004290          118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDG--TLRQHDFRQGSSCPPAGSSHQE  192 (763)
Q Consensus       118 --~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~  192 (763)
                        .|++||+.++.           ...+..+........|+|++ ..|+.++ .++  .|+++|+.+++..         
T Consensus       257 ~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~~---------  315 (417)
T TIGR02800       257 NPDIYVMDLDGKQ-----------LTRLTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEVR---------  315 (417)
T ss_pred             CccEEEEECCCCC-----------EEECCCCCCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCEE---------
Confidence              58888887532           23333444455677899954 5554443 344  4777777654310         


Q ss_pred             cceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC---cEEEEeCCCCCCCcccCCCCCCCCccccccc
Q 004290          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (763)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  269 (763)
                                    .+.   .+...+....|+|+ +++|+.++.++   .|.+||+.++... .+               
T Consensus       316 --------------~l~---~~~~~~~~~~~spd-g~~i~~~~~~~~~~~i~~~d~~~~~~~-~l---------------  361 (417)
T TIGR02800       316 --------------RLT---FRGGYNASPSWSPD-GDLIAFVHREGGGFNIAVMDLDGGGER-VL---------------  361 (417)
T ss_pred             --------------Eee---cCCCCccCeEECCC-CCEEEEEEccCCceEEEEEeCCCCCeE-Ec---------------
Confidence                          010   01223456789997 67787777765   7888888764311 00               


Q ss_pred             ccccCCCCCccceeEEEEcCCCCEEEEEeCCC---eEEEEECCC
Q 004290          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNH  310 (763)
Q Consensus       270 ~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~---~i~iwd~~~  310 (763)
                         ...+    ......|+|||++|+..+.++   .+++.+...
T Consensus       362 ---~~~~----~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       362 ---TDTG----LDESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             ---cCCC----CCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence               0000    133457999999998887743   455555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.15  E-value=1.6e-09  Score=119.22  Aligned_cols=76  Identities=16%  Similarity=0.163  Sum_probs=64.2

Q ss_pred             eeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecC-CcceEEEEeeCCCCeEEEEeCCCcEEEEcC
Q 004290          620 VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGD-EAVVNCVQCHPFDCVVATSGIDNTIKIWTP  698 (763)
Q Consensus       620 ~gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH-~~~V~~v~~sp~~~~laS~s~D~~IrvW~~  698 (763)
                      -||...+..+.    |.|+  +|+|++.|.+.++|+.. ++.+.++.+| .+.++.++.++....++|+|.|+.+|+|++
T Consensus       215 fgHsaRvw~~~----~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  215 FGHSARVWACC----FLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             ccccceeEEEE----eccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence            36777665443    7887  99999999999999665 6666799999 568999999999999999999999999998


Q ss_pred             CCCC
Q 004290          699 SASV  702 (763)
Q Consensus       699 ~~~~  702 (763)
                      ...-
T Consensus       288 ~~r~  291 (967)
T KOG0974|consen  288 NGRG  291 (967)
T ss_pred             hccc
Confidence            7654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=8.4e-10  Score=113.27  Aligned_cols=195  Identities=15%  Similarity=0.206  Sum_probs=142.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (763)
Q Consensus        61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (763)
                      ...+++.| ....|.-++++.|+.+..+ ....+.+++|..++.  ..+|++|+.+|.|.+||.+..+....    ....
T Consensus       145 scDly~~g-sg~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~----l~~~  216 (703)
T KOG2321|consen  145 SCDLYLVG-SGSEVYRLNLEQGRFLNPF-ETDSGELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGT----LDAA  216 (703)
T ss_pred             CccEEEee-cCcceEEEEcccccccccc-ccccccceeeeecCc--cceEEecccCceEEEecchhhhhhee----eecc
Confidence            34444444 4457888999999998888 566689999999998  57999999999999999997542211    1111


Q ss_pred             eeeecccC-----ceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCc
Q 004290          141 ALYQCHTR-----RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT  215 (763)
Q Consensus       141 ~~~~~h~~-----~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (763)
                      .....|.+     .|+++.|+. ++-.+++|..+|.|.|||+|..++..                        .-..+..
T Consensus       217 ~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~------------------------~kdh~~e  271 (703)
T KOG2321|consen  217 SSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLL------------------------VKDHGYE  271 (703)
T ss_pred             cccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCcee------------------------ecccCCc
Confidence            22223433     499999986 57899999999999999999987541                        1112345


Q ss_pred             cceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEE
Q 004290          216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL  295 (763)
Q Consensus       216 ~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~  295 (763)
                      .+|..+.|.+.+..--++......++|||-.+++....+.                      ....++.+|+-|++.+++
T Consensus       272 ~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE----------------------pt~~lND~C~~p~sGm~f  329 (703)
T KOG2321|consen  272 LPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE----------------------PTSDLNDFCFVPGSGMFF  329 (703)
T ss_pred             cceeeecccccCCCceEEecchHHhhhcccccCCceeecc----------------------ccCCcCceeeecCCceEE
Confidence            6788999987644445555667889999999988664432                      111489999999999999


Q ss_pred             EEeCCCeEEEEECCC
Q 004290          296 LSYSGEHVYLMDVNH  310 (763)
Q Consensus       296 ~~s~d~~i~iwd~~~  310 (763)
                      ++-.+..+..|=+..
T Consensus       330 ~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  330 TANESSKMHTYYIPS  344 (703)
T ss_pred             EecCCCcceeEEccc
Confidence            998888777765555

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.14  E-value=8e-09  Score=108.56  Aligned_cols=187  Identities=12%  Similarity=0.164  Sum_probs=120.1

Q ss_pred             ccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeC
Q 004290           25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (763)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~  104 (763)
                      +-...+.+-+  ..+.+.+.++......-..+.|+|||+++.+++.|+.|.++|+.+++.+.++..+  ....+++++++
T Consensus        13 ~~~~~v~viD--~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~s~D   88 (369)
T PF02239_consen   13 RGSGSVAVID--GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAVSPD   88 (369)
T ss_dssp             GGGTEEEEEE--TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE--T
T ss_pred             cCCCEEEEEE--CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEEcCC
Confidence            3345555555  5566778888765444456889999999999999999999999999999998433  45788999999


Q ss_pred             CCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCCCceeeec-------ccCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004290          105 TSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (763)
Q Consensus       105 ~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd  176 (763)
                        |++++++. ..+.+.++|.++.          ++++.+..       ...++..|..+|..+.++++.-+-+.|.+.|
T Consensus        89 --G~~~~v~n~~~~~v~v~D~~tl----------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd  156 (369)
T PF02239_consen   89 --GKYVYVANYEPGTVSVIDAETL----------EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD  156 (369)
T ss_dssp             --TTEEEEEEEETTEEEEEETTT------------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred             --CCEEEEEecCCCceeEeccccc----------cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence              78877665 6899999999873          33444432       2346778878885555665555568888888


Q ss_pred             CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEE-EeCCCcEEEEeCCCCCCCc
Q 004290          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPPLT  252 (763)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~s-gs~Dg~i~iwd~~~~~~~~  252 (763)
                      ....+..          ......              .........|+|+ ++++++ ...++.|-++|..+++.+.
T Consensus       157 y~d~~~~----------~~~~i~--------------~g~~~~D~~~dpd-gry~~va~~~sn~i~viD~~~~k~v~  208 (369)
T PF02239_consen  157 YSDPKNL----------KVTTIK--------------VGRFPHDGGFDPD-GRYFLVAANGSNKIAVIDTKTGKLVA  208 (369)
T ss_dssp             TTTSSCE----------EEEEEE----------------TTEEEEEE-TT-SSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             ecccccc----------ceeeec--------------ccccccccccCcc-cceeeecccccceeEEEeeccceEEE
Confidence            7765421          000110              1224567889997 566555 4567789999998876543

...

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.13  E-value=3.7e-10  Score=118.85  Aligned_cols=208  Identities=15%  Similarity=0.192  Sum_probs=143.3

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~  128 (763)
                      .+++..+..+|.|+-+|.++.-| +.+-|+... ...+-+..--.-.|-.+.|+|.....+-++......-.+|++....
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            46789999999999999988765 456676643 2222221112345778889987544555555556667799998755


Q ss_pred             CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (763)
                      .+.       ....+-+|...|+.+.|+|+.+..+++++.|-.+..||+++.....                        
T Consensus       103 ~~a-------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~------------------------  151 (1081)
T KOG0309|consen  103 SNA-------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF------------------------  151 (1081)
T ss_pred             ccc-------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce------------------------
Confidence            433       2456778999999999999999999999999999999999876331                        


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC-cccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL-TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (763)
Q Consensus       209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~  287 (763)
                      .....-......++|+-.+++.+| .+..+.|++||.+.+... ..+                    .+|-. .|+.+.|
T Consensus       152 ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~--------------------K~~vs-~vn~~~f  209 (1081)
T KOG0309|consen  152 YSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSL--------------------KGHVS-SVNSIDF  209 (1081)
T ss_pred             eeeecccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEe--------------------cccce-eeehHHH
Confidence            111111223456788877665554 456778999999987522 111                    22333 3777777


Q ss_pred             cC-CCCEEEEEeCCCeEEEEECCCC
Q 004290          288 SP-NGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       288 sp-dg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .. ....+.+.+.|++|++||....
T Consensus       210 nr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  210 NRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             hhhhhhhhcccCCCCceeeeccccc
Confidence            64 3345888999999999998774

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.11  E-value=2.4e-09  Score=117.77  Aligned_cols=196  Identities=11%  Similarity=0.135  Sum_probs=149.4

Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceE---EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004290           56 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF---CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  132 (763)
Q Consensus        56 l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~---~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~  132 (763)
                      ..+.-+.+.++.+..+..+-+||...+.....+.........   -+-++++  .-++++|+.-+.|.+|+....+    
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~--~~~i~~gsv~~~iivW~~~~dn----  166 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE--ELYIASGSVFGEIIVWKPHEDN----  166 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCc--EEEEEeccccccEEEEeccccC----
Confidence            344445678888888999999999988777666221111111   2333455  4689999999999999998311    


Q ss_pred             CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCC
Q 004290          133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  212 (763)
Q Consensus       133 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (763)
                           .+. .+.+|.+.|.++.|+- ++.+++++|+|.++++|++.+.+...                        ...-
T Consensus       167 -----~p~-~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~------------------------~~~f  215 (967)
T KOG0974|consen  167 -----KPI-RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLG------------------------CTGF  215 (967)
T ss_pred             -----Ccc-eecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccC------------------------cccc
Confidence                 222 5789999999999998 77999999999999999999987431                        1223


Q ss_pred             CCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCC
Q 004290          213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  292 (763)
Q Consensus       213 ~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~  292 (763)
                      +|...|..++|.|.   .+++++.|.+.++|+..-. .+..             +       .+|....|..++..++..
T Consensus       216 gHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~-~l~~-------------y-------~~h~g~~iw~~~~~~~~~  271 (967)
T KOG0974|consen  216 GHSARVWACCFLPN---RIITVGEDCTCRVWGVNGT-QLEV-------------Y-------DEHSGKGIWKIAVPIGVI  271 (967)
T ss_pred             cccceeEEEEeccc---eeEEeccceEEEEEecccc-eehh-------------h-------hhhhhcceeEEEEcCCce
Confidence            68889999999994   8999999999999965432 1111             1       446666799999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCC
Q 004290          293 EVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       293 ~l~~~s~d~~i~iwd~~~~~  312 (763)
                      .+++++.|+.+++|++....
T Consensus       272 ~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  272 IKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             EEEeeccCcchhhhhhhccc
Confidence            99999999999999998743

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=2.6e-08  Score=102.69  Aligned_cols=220  Identities=12%  Similarity=0.189  Sum_probs=127.8

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEE-----eC-----CCcEE
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-----AG-----DAEVR  120 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~-----s~-----dg~I~  120 (763)
                      ..++..+++++|+++|.+.. ..|+|++..++..+.+.. .  ..++++.|+|.  +.+|.+=     -.     .-.+.
T Consensus        35 ~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~-~--~~~~~L~fSP~--g~yL~T~e~~~i~~~~~~~~pn~~  108 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVE-L--KKTYDLLFSPK--GNYLLTWEPWAIYGPKNASNPNVL  108 (566)
T ss_pred             CcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEec-c--ceeeeeeeccc--ccccccccccccccCCCCCCCcee
Confidence            34788999999998887654 689999999886555442 2  27899999999  6777762     11     23467


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  200 (763)
                      +|++.+.-.          ...+..-...-.+..|++++ .+. .--..+.+++|++...+.+                 
T Consensus       109 v~~vet~~~----------~s~~q~k~Q~~W~~qfs~dE-sl~-arlv~nev~f~~~~~f~~~-----------------  159 (566)
T KOG2315|consen  109 VYNVETGVQ----------RSQIQKKMQNGWVPQFSIDE-SLA-ARLVSNEVQFYDLGSFKTI-----------------  159 (566)
T ss_pred             eeeecccee----------hhheehhhhcCcccccccch-hhh-hhhhcceEEEEecCCccce-----------------
Confidence            999887211          11121111122578888844 332 2233468999998775422                 


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCC-CCcEEEE-----EeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISST-RPHLLLV-----GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~-~~~~l~s-----gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (763)
                               ...-+...|+.+.++|. .+..+|+     ++.-..||||.......-..+       . .+.|       
T Consensus       160 ---------~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~-------a-~ksF-------  215 (566)
T KOG2315|consen  160 ---------QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV-------A-NKSF-------  215 (566)
T ss_pred             ---------eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh-------h-hccc-------
Confidence                     01113456778888885 2334443     345577999987632211110       0 1111       


Q ss_pred             CCCCccceeEEEEcCCCCEEE--EEeC-C---------CeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004290          275 HGRSSLHLTHVTFSPNGEEVL--LSYS-G---------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (763)
Q Consensus       275 ~g~~~~~i~~v~~spdg~~l~--~~s~-d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (763)
                        ... .=-.+.|.+-|.-|+  +.+. |         .++++.+++ +..........+++-.+.|+|.+
T Consensus       216 --Fka-dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~  282 (566)
T KOG2315|consen  216 --FKA-DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSG  282 (566)
T ss_pred             --ccc-ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCC
Confidence              001 123356766554322  2222 3         478888888 34444555556778888888854

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=1.1e-08  Score=111.78  Aligned_cols=203  Identities=15%  Similarity=0.160  Sum_probs=130.4

Q ss_pred             CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---CCcEEEEECCCCCCCCCCCCCCCCceeeecccC
Q 004290           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (763)
Q Consensus        72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (763)
                      ..|.+||..... ...+ ..|...+.+.+|+|+  |+.|+..+.   +..|.+||+.++.           ...+..+.+
T Consensus       182 ~~l~~~d~dg~~-~~~l-t~~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~-----------~~~l~~~~g  246 (435)
T PRK05137        182 KRLAIMDQDGAN-VRYL-TDGSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQ-----------RELVGNFPG  246 (435)
T ss_pred             eEEEEECCCCCC-cEEE-ecCCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCc-----------EEEeecCCC
Confidence            478899986543 3445 467789999999999  788877664   4679999998643           233445666


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004290          149 RVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (763)
Q Consensus       149 ~v~~l~~sp~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~  226 (763)
                      .+...+|+|++..++++.+.++.  |++||+.+++..                       .+.   .+........|+|+
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~Lt---~~~~~~~~~~~spD  300 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-----------------------RLT---DSPAIDTSPSYSPD  300 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-----------------------Ecc---CCCCccCceeEcCC
Confidence            77889999966556667777665  777788765421                       111   11223456799998


Q ss_pred             CCcEEEEEeC-CC--cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---
Q 004290          227 RPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---  300 (763)
Q Consensus       227 ~~~~l~sgs~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d---  300 (763)
                       ++.|+..+. ++  .|.+||+..+.... +             .      . .. ..+....|+|||++|+....+   
T Consensus       301 -G~~i~f~s~~~g~~~Iy~~d~~g~~~~~-l-------------t------~-~~-~~~~~~~~SpdG~~ia~~~~~~~~  357 (435)
T PRK05137        301 -GSQIVFESDRSGSPQLYVMNADGSNPRR-I-------------S------F-GG-GRYSTPVWSPRGDLIAFTKQGGGQ  357 (435)
T ss_pred             -CCEEEEEECCCCCCeEEEEECCCCCeEE-e-------------e------c-CC-CcccCeEECCCCCEEEEEEcCCCc
Confidence             566666553 33  57777876543210 0             0      0 11 135668899999999887653   


Q ss_pred             CeEEEEECCCCCccceEeecCCCCeeeeeccCCCCcccCC
Q 004290          301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP  340 (763)
Q Consensus       301 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  340 (763)
                      ..|.+||+.++...  ....+.......|+|+.+.+.+..
T Consensus       358 ~~i~~~d~~~~~~~--~lt~~~~~~~p~~spDG~~i~~~~  395 (435)
T PRK05137        358 FSIGVMKPDGSGER--ILTSGFLVEGPTWAPNGRVIMFFR  395 (435)
T ss_pred             eEEEEEECCCCceE--eccCCCCCCCCeECCCCCEEEEEE
Confidence            37888998664322  222233456678888877665543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.11  E-value=7.3e-09  Score=100.07  Aligned_cols=197  Identities=16%  Similarity=0.183  Sum_probs=117.2

Q ss_pred             CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecc------------cCceeEEEEecCC
Q 004290           92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH------------TRRVKKLAVEVGN  159 (763)
Q Consensus        92 h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~l~~sp~~  159 (763)
                      ...-|.++.|...  |.+|++|..+|.|.++.-.......     ......+..|            ...|..+.|.++.
T Consensus        24 eadiis~vef~~~--Ge~LatGdkgGRVv~f~r~~~~~~e-----y~~~t~fqshepEFDYLkSleieEKinkIrw~~~~   96 (433)
T KOG1354|consen   24 EADIISAVEFDHY--GERLATGDKGGRVVLFEREKLYKGE-----YNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG   96 (433)
T ss_pred             hhcceeeEEeecc--cceEeecCCCCeEEEeecccccccc-----eeeeeeeeccCcccchhhhhhhhhhhhhceecCCC
Confidence            3456889999998  8999999999999999766432100     1122333333            3468889998743


Q ss_pred             -CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCc----ccce---E-EE---ecCCCceeeccCCCCCccceEEEEEeCCC
Q 004290          160 -PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ----ECRN---I-LL---DLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (763)
Q Consensus       160 -~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~~---~-~~---~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  227 (763)
                       ...|+..+.|++|++|-++.............    ....   . +.   ++.......-.....|..-|++|.++.+ 
T Consensus        97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD-  175 (433)
T KOG1354|consen   97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD-  175 (433)
T ss_pred             CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc-
Confidence             34666778899999999876543220000000    0000   0 00   0000001111233568889999999997 


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCeEEEE
Q 004290          228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLM  306 (763)
Q Consensus       228 ~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd-g~~l~~~s~d~~i~iw  306 (763)
                      ...+++ ..|=.|.+|.+.--..-..+.          -..|.....  . ..-|++..|+|. ...++-++..|+|++-
T Consensus       176 ~Et~lS-ADdLRINLWnlei~d~sFnIV----------DIKP~nmEe--L-teVITsaEFhp~~cn~f~YSSSKGtIrLc  241 (433)
T KOG1354|consen  176 KETFLS-ADDLRINLWNLEIIDQSFNIV----------DIKPANMEE--L-TEVITSAEFHPHHCNVFVYSSSKGTIRLC  241 (433)
T ss_pred             cceEee-ccceeeeeccccccCCceeEE----------EccccCHHH--H-HHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence            445554 567889999987432111110          000111000  1 115899999995 4567778889999999


Q ss_pred             ECCC
Q 004290          307 DVNH  310 (763)
Q Consensus       307 d~~~  310 (763)
                      |++.
T Consensus       242 DmR~  245 (433)
T KOG1354|consen  242 DMRQ  245 (433)
T ss_pred             echh
Confidence            9987

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.08  E-value=2.4e-09  Score=102.65  Aligned_cols=268  Identities=15%  Similarity=0.173  Sum_probs=160.2

Q ss_pred             CceEEEEeCCCCCEEEE-EeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           51 GCVNAISWNSKGSLLIS-GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Las-gs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      +.|.-+.|..|..+++. ...|+.|.+|++...+--.++ ......+.+++|+|++ ..+|.+...+-.|.+|.+.+.++
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdg-rhiL~tseF~lriTVWSL~t~~~  126 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDG-RHILLTSEFDLRITVWSLNTQKG  126 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe-ccCCCcceeeeECCCc-ceEeeeecceeEEEEEEecccee
Confidence            56778899988776554 567889999999999888888 5667789999999994 47788888899999999997443


Q ss_pred             CCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC-CC-------------cEEEEECCCCCCCCCCCCCCcccce
Q 004290          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DG-------------TLRQHDFRQGSSCPPAGSSHQECRN  195 (763)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~-dg-------------~i~iwd~~~~~~~~~~~~~~~~~~~  195 (763)
                      .           -++--+..+..++|+| ++++.+.++. |.             .++-+++.+-........ ...+..
T Consensus       127 ~-----------~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs-Pdg~~l  193 (447)
T KOG4497|consen  127 Y-----------LLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS-PDGNWL  193 (447)
T ss_pred             E-----------EecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC-CCCcEE
Confidence            2           1222233456777877 5566554443 11             112233332221111111 111222


Q ss_pred             EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC----------------
Q 004290          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS----------------  259 (763)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~----------------  259 (763)
                      .+|+.--.....   .-.....+..++|+|. ++.|++|+.|+.+||.+--+.+.+..+...-.                
T Consensus       194 aVwd~~Leykv~---aYe~~lG~k~v~wsP~-~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~  269 (447)
T KOG4497|consen  194 AVWDNVLEYKVY---AYERGLGLKFVEWSPC-NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSI  269 (447)
T ss_pred             EEecchhhheee---eeeeccceeEEEeccc-cceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcch
Confidence            222211000000   0011246889999997 68999999999999877665554433321000                


Q ss_pred             ---CCCcc----------------------------cccccccccCCCCCccceeEEEEcCCCCEEEEEeC--CCeEEEE
Q 004290          260 ---PPPCV----------------------------NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS--GEHVYLM  306 (763)
Q Consensus       260 ---~~~~~----------------------------~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~--d~~i~iw  306 (763)
                         .-.|+                            ....|..-.+  .....+..++|++|..|+++-.+  -+.+-+|
T Consensus       270 ~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~p--nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~W  347 (447)
T KOG4497|consen  270 VQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFP--NPKCGAGKLAFSCDSTYAATRNDKYPNALWLW  347 (447)
T ss_pred             hhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCC--CcccccceeeecCCceEEeeecCCCCceEEEE
Confidence               00011                            1111111111  11224788999999999888765  4689999


Q ss_pred             ECCCCCccceEeecCCCCeeeeeccCCCCcccCC
Q 004290          307 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP  340 (763)
Q Consensus       307 d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  340 (763)
                      |++.. +.....-..++++..-|.|.-..+....
T Consensus       348 dlq~l-~l~avLiQk~piraf~WdP~~prL~vct  380 (447)
T KOG4497|consen  348 DLQNL-KLHAVLIQKHPIRAFEWDPGRPRLVVCT  380 (447)
T ss_pred             echhh-hhhhhhhhccceeEEEeCCCCceEEEEc
Confidence            99984 3444444567778888888655554433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=1.4e-08  Score=110.49  Aligned_cols=221  Identities=11%  Similarity=0.081  Sum_probs=126.2

Q ss_pred             eeccccCceEEEEeCCCCCEEEEEeCC-C--cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEE-EEeCCCc--
Q 004290           45 ELEGHQGCVNAISWNSKGSLLISGSDD-T--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDAE--  118 (763)
Q Consensus        45 ~l~gH~~~V~~l~fsp~g~~Lasgs~D-~--~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~-s~s~dg~--  118 (763)
                      .+..+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++.....  ...+......|+|+  ++.|+ +.+.++.  
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt--~~~g~~~~~~wSPD--G~~La~~~~~~g~~~  287 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT--SFPGINGAPRFSPD--GKKLALVLSKDGQPE  287 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec--CCCCCcCCeeECCC--CCEEEEEEeCCCCeE
Confidence            344455678899999999999876543 2  5888999887653322  22333457899999  56555 5566775  


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccceE
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNI  196 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~  196 (763)
                      |.++|+..+.           ...+..+.......+|+|++..++++...++.  |+++|+.+++..             
T Consensus       288 Iy~~dl~tg~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-------------  343 (448)
T PRK04792        288 IYVVDIATKA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-------------  343 (448)
T ss_pred             EEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-------------
Confidence            6677776532           33344455566778999965445555544444  555666654311             


Q ss_pred             EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-CCCc--EEEEeCCCCCCCcccCCCCCCCCccccccccccc
Q 004290          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (763)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs-~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (763)
                                .+.. .+  ......+|+|+ +++|+..+ .++.  |.++|+.+++.. .+             ..    
T Consensus       344 ----------~Lt~-~g--~~~~~~~~SpD-G~~l~~~~~~~g~~~I~~~dl~~g~~~-~l-------------t~----  391 (448)
T PRK04792        344 ----------RLTF-EG--EQNLGGSITPD-GRSMIMVNRTNGKFNIARQDLETGAMQ-VL-------------TS----  391 (448)
T ss_pred             ----------EEec-CC--CCCcCeeECCC-CCEEEEEEecCCceEEEEEECCCCCeE-Ec-------------cC----
Confidence                      1110 01  11234689998 45665544 3444  455677665321 00             00    


Q ss_pred             CCCCCccceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCCccceEeecCCCCeeeeecc
Q 004290          274 EHGRSSLHLTHVTFSPNGEEVLLSYS-GE--HVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (763)
Q Consensus       274 ~~g~~~~~i~~v~~spdg~~l~~~s~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (763)
                       . .   ......|+|||++|+..+. ++  .+++++... ................+|+|
T Consensus       392 -~-~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        392 -T-R---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-RFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             -C-C---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCC
Confidence             0 0   0123469999999887765 33  477778754 33332222333445566666

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=1.8e-08  Score=110.15  Aligned_cols=224  Identities=13%  Similarity=0.079  Sum_probs=133.5

Q ss_pred             ceeeccccCceEEEEeCCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEE-EEeCCC-
Q 004290           43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA-  117 (763)
Q Consensus        43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D---~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~-s~s~dg-  117 (763)
                      .+.+..+...+...+|+|||+.|+..+.+   ..|.+||+.+++... + ....+.+....|+|+  |+.|+ +.+.++ 
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~SpD--G~~la~~~~~~g~  266 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSPD--GSKLAFVLSKDGN  266 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECCC--CCEEEEEEccCCC
Confidence            34555677889999999999999876643   368999999886543 2 233345567899999  66665 555555 


Q ss_pred             -cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccc
Q 004290          118 -EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       118 -~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                       .|.+||+.++.           ...+..+........|+|++..++++...+|  .|+++|+.+++..           
T Consensus       267 ~~Iy~~d~~~~~-----------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-----------  324 (430)
T PRK00178        267 PEIYVMDLASRQ-----------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-----------  324 (430)
T ss_pred             ceEEEEECCCCC-----------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------
Confidence             57888887632           2334445555667899996544555544444  4666777655411           


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC-CC--cEEEEeCCCCCCCcccCCCCCCCCccccccccc
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  271 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (763)
                                  .+.. .+  .......|+|+ ++.|+..+. ++  .|.+||+.+++... +             .   
T Consensus       325 ------------~lt~-~~--~~~~~~~~Spd-g~~i~~~~~~~~~~~l~~~dl~tg~~~~-l-------------t---  371 (430)
T PRK00178        325 ------------RVTF-VG--NYNARPRLSAD-GKTLVMVHRQDGNFHVAAQDLQRGSVRI-L-------------T---  371 (430)
T ss_pred             ------------Eeec-CC--CCccceEECCC-CCEEEEEEccCCceEEEEEECCCCCEEE-c-------------c---
Confidence                        0000 00  11234679997 566665554 33  47888988754210 0             0   


Q ss_pred             ccCCCCCccceeEEEEcCCCCEEEEEeCC---CeEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004290          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (763)
Q Consensus       272 ~~~~g~~~~~i~~v~~spdg~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (763)
                         .+.   ......|+|||++|+.++.+   ..|+++++.... ..............+|+|.
T Consensus       372 ---~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~-~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        372 ---DTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV-RLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             ---CCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEECcCCCCCcCCCccCCC
Confidence               000   11235799999999887753   357777775532 2122222333455556653

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.06  E-value=1.5e-08  Score=96.10  Aligned_cols=187  Identities=14%  Similarity=0.235  Sum_probs=136.2

Q ss_pred             ccCceEEEEeCC---CCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCC------CceEEEEEeeCCCCcEEEEEeCCCc
Q 004290           49 HQGCVNAISWNS---KGS-LLISGSDDTHINVWSYSSRKLLHSIETGHS------ANVFCTKFVPETSDELVVSGAGDAE  118 (763)
Q Consensus        49 H~~~V~~l~fsp---~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~------~~V~~v~~~p~~~~~~l~s~s~dg~  118 (763)
                      .+..+..+.|+-   +|. .|+-+-.+|.|.++..........+ .+-.      ....++.|++.  +..++++-.+|.
T Consensus        68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-~~ls~~ki~~~~~lslD~~~~--~~~i~vs~s~G~  144 (339)
T KOG0280|consen   68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-RGLSSKKISVVEALSLDISTS--GTKIFVSDSRGS  144 (339)
T ss_pred             cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-cccchhhhhheeeeEEEeecc--CceEEEEcCCCc
Confidence            345677888864   555 5667778899999987655444333 2211      12457888888  688999988999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  198 (763)
                      +.+-+.....        .+..+..+.|.-++....|+..+++++++||.|+.+..||+|.++.             .+|
T Consensus       145 ~~~v~~t~~~--------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-------------~i~  203 (339)
T KOG0280|consen  145 ISGVYETEMV--------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-------------FIW  203 (339)
T ss_pred             EEEEecceee--------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-------------eee
Confidence            9866655422        2345678899999999999988899999999999999999995441             111


Q ss_pred             ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC-CCCCCcccCCCCCCCCcccccccccccCCCC
Q 004290          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (763)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (763)
                                .....|...|.+|.-+|..+.++++|+.|..|++||.| +++++...                      .
T Consensus       204 ----------~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----------------------~  251 (339)
T KOG0280|consen  204 ----------HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA----------------------K  251 (339)
T ss_pred             ----------ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC----------------------c
Confidence                      12335778899999998889999999999999999999 44444221                      1


Q ss_pred             CccceeEEEEcCCC
Q 004290          278 SSLHLTHVTFSPNG  291 (763)
Q Consensus       278 ~~~~i~~v~~spdg  291 (763)
                      -.+.|+.+.++|.-
T Consensus       252 v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  252 VGGGVWRIKHHPEI  265 (339)
T ss_pred             cccceEEEEecchh
Confidence            12359999999853

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.01  E-value=9e-09  Score=97.56  Aligned_cols=161  Identities=16%  Similarity=0.086  Sum_probs=118.9

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEE--EEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (763)
Q Consensus        53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~  130 (763)
                      ..++.|++.+..++++-.+|.+.+-+.......  +.. +.|..+++-++|+... .+++.+|+.|+.+..||++.+.. 
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~-pnlvytGgDD~~l~~~D~R~p~~-  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKE-PNLVYTGGDDGSLSCWDIRIPKT-  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCC-CceEEecCCCceEEEEEecCCcc-
Confidence            347788898999999999999986554443322  244 7899999999999875 68999999999999999995431 


Q ss_pred             CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccC
Q 004290          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (763)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (763)
                      .       ..+..+-|...|.+|.-+|..+.+++||+.|-.|++||.|....+...                        
T Consensus       201 ~-------i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~------------------------  249 (339)
T KOG0280|consen  201 F-------IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK------------------------  249 (339)
T ss_pred             e-------eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc------------------------
Confidence            1       123356789999999999988899999999999999999965433111                        


Q ss_pred             CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC
Q 004290          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (763)
Q Consensus       211 ~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~  248 (763)
                      . ...+.|..+.++|.....++.++.-+-.+|-+....
T Consensus       250 ~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~  286 (339)
T KOG0280|consen  250 A-KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK  286 (339)
T ss_pred             C-ccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence            0 123678888888865445555555556667666643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.00  E-value=7.1e-07  Score=94.06  Aligned_cols=231  Identities=10%  Similarity=0.101  Sum_probs=134.1

Q ss_pred             hccccceeeccccCceEEEEeCCCCCEEEEEeC----CCcEEEEeCCCC--e--EEEEEccCCCCceEEEEEeeCCCCcE
Q 004290           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSD----DTHINVWSYSSR--K--LLHSIETGHSANVFCTKFVPETSDEL  109 (763)
Q Consensus        38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~----D~~v~iWd~~~~--~--~~~~~~~~h~~~V~~v~~~p~~~~~~  109 (763)
                      .++..+..+. -......|+++|++++|.+...    ++.|..|.+...  +  .+... .........++++|+  +++
T Consensus        25 g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~~--g~~  100 (345)
T PF10282_consen   25 GTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDPD--GRF  100 (345)
T ss_dssp             TEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECTT--SSE
T ss_pred             CCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEecC--CCE
Confidence            4444444433 2344567899999999988876    578999988753  3  33333 223455678999999  688


Q ss_pred             EEEEeC-CCcEEEEECCCCCCCCCCCCCCCCceeee----------cccCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004290          110 VVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQ----------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (763)
Q Consensus       110 l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~----------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~  178 (763)
                      |+++.. +|.|.++++... +...     .....+.          .-....+++.|+|++..++++.-....|.+|++.
T Consensus       101 l~vany~~g~v~v~~l~~~-g~l~-----~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~  174 (345)
T PF10282_consen  101 LYVANYGGGSVSVFPLDDD-GSLG-----EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID  174 (345)
T ss_dssp             EEEEETTTTEEEEEEECTT-SEEE-----EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred             EEEEEccCCeEEEEEccCC-cccc-----eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            888774 899999999863 2110     1111111          1234578899999554444444445689999987


Q ss_pred             CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC-CCcccCCC
Q 004290          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKR  257 (763)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~~~~~  257 (763)
                      ......       . ......+            ........++|+|++...+++.-.++.|.+|++.... .+..    
T Consensus       175 ~~~~~l-------~-~~~~~~~------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~----  230 (345)
T PF10282_consen  175 DDTGKL-------T-PVDSIKV------------PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE----  230 (345)
T ss_dssp             TTS-TE-------E-EEEEEEC------------STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE----
T ss_pred             CCCceE-------E-Eeecccc------------ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE----
Confidence            764110       0 0000011            1223467899999854444555677889999988221 1110    


Q ss_pred             CCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 004290          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  310 (763)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~  310 (763)
                            +...........+..  ....|+++|||++|+++.. .+.|.+|+++.
T Consensus       231 ------~~~~~~~~~~~~~~~--~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~  276 (345)
T PF10282_consen  231 ------IQTISTLPEGFTGEN--APAEIAISPDGRFLYVSNRGSNSISVFDLDP  276 (345)
T ss_dssp             ------EEEEESCETTSCSSS--SEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred             ------EEEeeeccccccccC--CceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence                  011000000011111  4788999999999998876 78999999854

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=1.1e-07  Score=103.75  Aligned_cols=174  Identities=7%  Similarity=0.044  Sum_probs=100.6

Q ss_pred             cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-CC--cEEEEECCCCCCCCCCCCCCCCceeeecccCc
Q 004290           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (763)
Q Consensus        73 ~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (763)
                      .|.++|...... +.+ ..+...+.+..|+|+  |+.|+..+. ++  .|.+||+..+..           ..+....+.
T Consensus       199 ~l~i~d~dG~~~-~~l-~~~~~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~-----------~~lt~~~g~  263 (448)
T PRK04792        199 QLMIADYDGYNE-QML-LRSPEPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVR-----------EKVTSFPGI  263 (448)
T ss_pred             EEEEEeCCCCCc-eEe-ecCCCcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCe-----------EEecCCCCC
Confidence            577778765443 334 356678899999999  677776654 33  588888876321           112222333


Q ss_pred             eeEEEEecCCCCEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC
Q 004290          150 VKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (763)
Q Consensus       150 v~~l~~sp~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  227 (763)
                      ....+|+|++..++++.+.+|.  |+++|+.+++..                       .+.   .+.......+|+|+ 
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-----------------------~lt---~~~~~~~~p~wSpD-  316 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-----------------------RIT---RHRAIDTEPSWHPD-  316 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-----------------------ECc---cCCCCccceEECCC-
Confidence            4568999966556566677775  777787765411                       111   11223456789998 


Q ss_pred             CcEEEEEe-CCCc--EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC--
Q 004290          228 PHLLLVGG-SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE--  301 (763)
Q Consensus       228 ~~~l~sgs-~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~--  301 (763)
                      ++.|+..+ .++.  |.++|+.+++... +                  ...+.   .....+|+|||++|+..+. ++  
T Consensus       317 G~~I~f~s~~~g~~~Iy~~dl~~g~~~~-L------------------t~~g~---~~~~~~~SpDG~~l~~~~~~~g~~  374 (448)
T PRK04792        317 GKSLIFTSERGGKPQIYRVNLASGKVSR-L------------------TFEGE---QNLGGSITPDGRSMIMVNRTNGKF  374 (448)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCEEE-E------------------ecCCC---CCcCeeECCCCCEEEEEEecCCce
Confidence            45555444 3444  5566666553210 0                  00111   1334689999999887665 33  


Q ss_pred             eEEEEECCC
Q 004290          302 HVYLMDVNH  310 (763)
Q Consensus       302 ~i~iwd~~~  310 (763)
                      .|.++|+.+
T Consensus       375 ~I~~~dl~~  383 (448)
T PRK04792        375 NIARQDLET  383 (448)
T ss_pred             EEEEEECCC
Confidence            344455544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.99  E-value=1.4e-06  Score=91.85  Aligned_cols=208  Identities=14%  Similarity=0.139  Sum_probs=119.9

Q ss_pred             EEEEeCC----CcEEEEeC--CCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC----CCcEEEEECCCCCCCCCCC
Q 004290           65 LISGSDD----THINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG----DAEVRLFNLSRFSGRGLDD  134 (763)
Q Consensus        65 Lasgs~D----~~v~iWd~--~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~----dg~I~iwd~~~~~~~~~~~  134 (763)
                      ++.|+..    +.|.+|++  ++++....-..........++++|+  +++|.++..    ++.|..|++....+.    
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~--~~~LY~~~e~~~~~g~v~~~~i~~~~g~----   75 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPD--GRRLYVVNEGSGDSGGVSSYRIDPDTGT----   75 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TT--SSEEEEEETTSSTTTEEEEEEEETTTTE----
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeC--CCEEEEEEccccCCCCEEEEEECCCcce----
Confidence            4556655    68888887  4554332211123455677899998  688888876    578999998863221    


Q ss_pred             CCCCCceeeecccCceeEEEEecCCCCEEEEE-eCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCC
Q 004290          135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK  213 (763)
Q Consensus       135 ~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (763)
                        ...+............++++|++ .+++++ ..+|.|.++++.....+.        ....++... +.  .......
T Consensus        76 --L~~~~~~~~~g~~p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l~--------~~~~~~~~~-g~--g~~~~rq  141 (345)
T PF10282_consen   76 --LTLLNSVPSGGSSPCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSLG--------EVVQTVRHE-GS--GPNPDRQ  141 (345)
T ss_dssp             --EEEEEEEEESSSCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSEEE--------EEEEEEESE-EE--ESSTTTT
T ss_pred             --eEEeeeeccCCCCcEEEEEecCC-CEEEEEEccCCeEEEEEccCCcccc--------eeeeecccC-CC--CCccccc
Confidence              12344444344566789999955 555555 468999999998742110        000011000 00  0000112


Q ss_pred             CccceEEEEEeCCCCcEEEEEe-CCCcEEEEeCCCCCC-CcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC
Q 004290          214 QTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (763)
Q Consensus       214 ~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg  291 (763)
                      ......++.|+|+ ++++++.. ....|++|++..... +...          ..     +.  -..+..-..++|+|++
T Consensus       142 ~~~h~H~v~~~pd-g~~v~v~dlG~D~v~~~~~~~~~~~l~~~----------~~-----~~--~~~G~GPRh~~f~pdg  203 (345)
T PF10282_consen  142 EGPHPHQVVFSPD-GRFVYVPDLGADRVYVYDIDDDTGKLTPV----------DS-----IK--VPPGSGPRHLAFSPDG  203 (345)
T ss_dssp             SSTCEEEEEE-TT-SSEEEEEETTTTEEEEEEE-TTS-TEEEE----------EE-----EE--CSTTSSEEEEEE-TTS
T ss_pred             ccccceeEEECCC-CCEEEEEecCCCEEEEEEEeCCCceEEEe----------ec-----cc--cccCCCCcEEEEcCCc
Confidence            2345678999998 56666554 456899999976541 1100          00     00  0112247789999999


Q ss_pred             CEEEEEeC-CCeEEEEECCC
Q 004290          292 EEVLLSYS-GEHVYLMDVNH  310 (763)
Q Consensus       292 ~~l~~~s~-d~~i~iwd~~~  310 (763)
                      +++++... ++.|.+|++..
T Consensus       204 ~~~Yv~~e~s~~v~v~~~~~  223 (345)
T PF10282_consen  204 KYAYVVNELSNTVSVFDYDP  223 (345)
T ss_dssp             SEEEEEETTTTEEEEEEEET
T ss_pred             CEEEEecCCCCcEEEEeecc
Confidence            99988776 88999998884

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.99  E-value=1.8e-08  Score=97.47  Aligned_cols=195  Identities=14%  Similarity=0.156  Sum_probs=134.7

Q ss_pred             cccccccccchhhh--hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC----CCeEEEEEccCCCCceE
Q 004290           24 PDVNHSLQMHSSLV--RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS----SRKLLHSIETGHSANVF   97 (763)
Q Consensus        24 ~~~~~~~~~~~~~~--~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~----~~~~~~~~~~~h~~~V~   97 (763)
                      .+.++.+++|...-  +.+.-++  ..-..+++++++.++...|+.|-.+|++.-+.+.    ....++.. ..|...|.
T Consensus        42 ~s~drtvrv~lkrds~q~wpsI~--~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~-~~h~~~v~  118 (404)
T KOG1409|consen   42 VSEDRTVRVWLKRDSGQYWPSIY--HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDY-LAHQARVS  118 (404)
T ss_pred             ccccceeeeEEeccccccCchhh--hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhh-hhhhccee
Confidence            34566666665221  1122222  1235689999999999999999999999988654    33344444 68999999


Q ss_pred             EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCC-------------------------------CCCCCCCCceeeecc
Q 004290           98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG-------------------------------LDDNAITPSALYQCH  146 (763)
Q Consensus        98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~-------------------------------~~~~~~~~~~~~~~h  146 (763)
                      .+-|+-.  ...+++.+.|..+.---.+.+.+..                               ...+...++..+.+|
T Consensus       119 ~~if~~~--~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h  196 (404)
T KOG1409|consen  119 AIVFSLT--HEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH  196 (404)
T ss_pred             eEEecCC--ceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc
Confidence            9999877  4788888888766433222211100                               012233556778899


Q ss_pred             cCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004290          147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (763)
Q Consensus       147 ~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~  226 (763)
                      .+.+++++|.| ...++.+|..|..|.+||+-..+-.                        .....+|...|..+..-+.
T Consensus       197 ~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~------------------------~~el~gh~~kV~~l~~~~~  251 (404)
T KOG1409|consen  197 TGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGT------------------------AYELQGHNDKVQALSYAQH  251 (404)
T ss_pred             ccceEEEEEcC-CCcEEEeccccCceEEEeccCCcce------------------------eeeeccchhhhhhhhhhhh
Confidence            99999999999 6688889999999999999766522                        2233345566666666664


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCC
Q 004290          227 RPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       227 ~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                       -..+.+++.||.|.+|++....
T Consensus       252 -t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  252 -TRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             -heeeeeccCCCeEEEEecccee
Confidence             5789999999999999987543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.99  E-value=2.8e-07  Score=93.98  Aligned_cols=223  Identities=14%  Similarity=0.167  Sum_probs=136.3

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC-----------
Q 004290           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-----------  117 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg-----------  117 (763)
                      -.-++..++|||.|.+|++... ..|.+|+-.....+..+  .| ..|..+.|+|.  +.+|++=+...           
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~--~~-~~V~~~~fSP~--~kYL~tw~~~pi~~pe~e~sp~  104 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRF--RH-PDVKYLDFSPN--EKYLVTWSREPIIEPEIEISPF  104 (561)
T ss_pred             cCcchhheeecCcchheehhhc-cceEEccccchhheeee--ec-CCceecccCcc--cceeeeeccCCccChhhccCCc
Confidence            4567899999999999998766 46899998877766665  24 46899999999  79999876544           


Q ss_pred             ----cEEEEECCCCCCCCCCCCCCCCceeeecccCc--ee-EEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004290          118 ----EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR--VK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH  190 (763)
Q Consensus       118 ----~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  190 (763)
                          .+.+||...+          ..+..+.....+  .. -+.|+.++ .+++-. ....++|+++ +......     
T Consensus       105 ~~~n~~~vwd~~sg----------~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~~~-----  166 (561)
T COG5354         105 TSKNNVFVWDIASG----------MIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIEEH-----  166 (561)
T ss_pred             cccCceeEEeccCc----------eeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCccccC-----
Confidence                3899999863          224555544444  44 56788744 555443 3357899997 3321100     


Q ss_pred             cccceEEEecCCCceeeccCCCCCccceEEEEEeCC-CCcEEEE-----EeCCCcEEEEeCCCCCCCcccCCCCCCCCcc
Q 004290          191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLV-----GGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (763)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~-~~~~l~s-----gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (763)
                           -+             ..-....|....|+|. ++..||.     .+.++.++||.+.....+.+.          
T Consensus       167 -----p~-------------~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk----------  218 (561)
T COG5354         167 -----PF-------------KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK----------  218 (561)
T ss_pred             -----ch-------------hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee----------
Confidence                 00             0001234666677775 2223332     457788999988755433211          


Q ss_pred             cccccccccCCCCCccceeEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004290          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (763)
Q Consensus       265 ~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (763)
                       .     +.     ...=..+.|.+.|.+|+.-..           ...++|+++.... .........++-.++|.|.+
T Consensus       219 -~-----lf-----k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S  286 (561)
T COG5354         219 -N-----LF-----KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLS  286 (561)
T ss_pred             -e-----eE-----eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccC
Confidence             0     00     001234678888887765321           3568888887532 22222445666777777764


Q ss_pred             CC
Q 004290          334 NG  335 (763)
Q Consensus       334 ~~  335 (763)
                      ..
T Consensus       287 ~~  288 (561)
T COG5354         287 SR  288 (561)
T ss_pred             Cc
Confidence            43

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=2.3e-07  Score=101.41  Aligned_cols=175  Identities=10%  Similarity=0.075  Sum_probs=105.2

Q ss_pred             cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---CcEEEEECCCCCCCCCCCCCCCCceeeecccCc
Q 004290           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (763)
Q Consensus        73 ~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (763)
                      .|.++|.+.+.. ..+ ..+...+....|+|+  |+.|+..+.+   ..|.+||+.++..           ..+....+.
T Consensus       180 ~l~~~d~~g~~~-~~l-~~~~~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~-----------~~l~~~~g~  244 (430)
T PRK00178        180 TLQRSDYDGARA-VTL-LQSREPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRR-----------EQITNFEGL  244 (430)
T ss_pred             EEEEECCCCCCc-eEE-ecCCCceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCE-----------EEccCCCCC
Confidence            478888875543 344 356778999999999  6888776543   3588999986431           222223344


Q ss_pred             eeEEEEecCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC
Q 004290          150 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (763)
Q Consensus       150 v~~l~~sp~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  227 (763)
                      +....|+|++..++++...+|  .|++||+.+++..                       .+..   +........|+|+ 
T Consensus       245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~lt~---~~~~~~~~~~spD-  297 (430)
T PRK00178        245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-----------------------RVTN---HPAIDTEPFWGKD-  297 (430)
T ss_pred             cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-----------------------Eccc---CCCCcCCeEECCC-
Confidence            557899996544555666665  5788888776421                       1110   1122345689998 


Q ss_pred             CcEEEEEe-CCC--cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-C--
Q 004290          228 PHLLLVGG-SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-E--  301 (763)
Q Consensus       228 ~~~l~sgs-~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d-~--  301 (763)
                      ++.|+..+ .++  .|.++|+.+++... +          . +       .+.   ......|+|||++|+..+.+ +  
T Consensus       298 g~~i~f~s~~~g~~~iy~~d~~~g~~~~-l----------t-~-------~~~---~~~~~~~Spdg~~i~~~~~~~~~~  355 (430)
T PRK00178        298 GRTLYFTSDRGGKPQIYKVNVNGGRAER-V----------T-F-------VGN---YNARPRLSADGKTLVMVHRQDGNF  355 (430)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCEEE-e----------e-c-------CCC---CccceEECCCCCEEEEEEccCCce
Confidence            45554444 444  46666776554210 0          0 0       111   13456899999999877653 3  


Q ss_pred             eEEEEECCCC
Q 004290          302 HVYLMDVNHA  311 (763)
Q Consensus       302 ~i~iwd~~~~  311 (763)
                      .|++||+.++
T Consensus       356 ~l~~~dl~tg  365 (430)
T PRK00178        356 HVAAQDLQRG  365 (430)
T ss_pred             EEEEEECCCC
Confidence            4677777663

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.96  E-value=1.3e-08  Score=96.87  Aligned_cols=239  Identities=15%  Similarity=0.217  Sum_probs=151.8

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEE----EEccCCC------------CceEEEEEeeCCCCcEEE
Q 004290           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLH----SIETGHS------------ANVFCTKFVPETSDELVV  111 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~----~~~~~h~------------~~V~~v~~~p~~~~~~l~  111 (763)
                      ..+-|+++.|...|.+|++|...|.|.++.-+... |-.    .| ++|.            ..|..+.|..+++...++
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            35679999999999999999999999999865432 222    23 4443            468889998776455677


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCC--------------------------------CCCCceee-ecccCceeEEEEecC
Q 004290          112 SGAGDAEVRLFNLSRFSGRGLDDN--------------------------------AITPSALY-QCHTRRVKKLAVEVG  158 (763)
Q Consensus       112 s~s~dg~I~iwd~~~~~~~~~~~~--------------------------------~~~~~~~~-~~h~~~v~~l~~sp~  158 (763)
                      ..+.|++|++|.+....-.....+                                ...+.+.. ..|.-.|+++.|+. 
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-  182 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-  182 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-
Confidence            777899999999986421110000                                00111222 45777889999987 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004290          159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (763)
Q Consensus       159 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg  238 (763)
                      +...+++ +.|=.|.+|++.....+           ..+.+.++....      .-+..|++..|+|..-+.|.-.++.|
T Consensus       183 D~et~lS-aDdLrINLWnl~i~D~s-----------FnIVDiKP~nme------eLteVItSaeFhp~~cn~fmYSsSkG  244 (460)
T COG5170         183 DKETLLS-ADDLRINLWNLEIIDGS-----------FNIVDIKPHNME------ELTEVITSAEFHPEMCNVFMYSSSKG  244 (460)
T ss_pred             chheeee-ccceeeeeccccccCCc-----------eEEEeccCccHH------HHHHHHhhcccCHhHcceEEEecCCC
Confidence            4455545 46788999998765422           233443332211      12456889999998778888899999


Q ss_pred             cEEEEeCCCCCCCcc---cCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccc
Q 004290          239 FARLYDRRMLPPLTS---CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA  315 (763)
Q Consensus       239 ~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~  315 (763)
                      .|++-|+|.......   +......+-.+..|       .+... .|..+.|+++|+++++-. --+|+|||++..+.+.
T Consensus       245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff-------~eivs-SISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pi  315 (460)
T COG5170         245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFF-------EEIVS-SISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPI  315 (460)
T ss_pred             cEEehhhhhhhhccCchhhhhhccCcccchhH-------HHHhh-hhcceEEcCCCcEEEEec-cceEEEEecccccCCc
Confidence            999999994331100   00000000000000       11111 488999999999877543 4589999999866443


Q ss_pred             e
Q 004290          316 M  316 (763)
Q Consensus       316 ~  316 (763)
                      .
T Consensus       316 k  316 (460)
T COG5170         316 K  316 (460)
T ss_pred             e
Confidence            3

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=2.5e-09  Score=108.95  Aligned_cols=213  Identities=18%  Similarity=0.236  Sum_probs=142.1

Q ss_pred             ceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC-------CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004290           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (763)
Q Consensus        43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~-------~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~  115 (763)
                      +..+.||+..|+.++--.+.+-+++++.|++|++|.++.       ..+..++ +.|+.+|.++.|..+  .+.++++  
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~--lr~i~Sc--  802 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLAD--LRSIASC--  802 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeec--cceeeec--
Confidence            346789999999998888888999999999999999863       2356666 799999999999988  5677765  


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE-EEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV-VWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      ||.|++||.-.+.  .+....   -..-.+..+.|.|+.- - +..+ ++-++...+|+++|.|..+-.         | 
T Consensus       803 D~giHlWDPFigr--~Laq~~---dapk~~a~~~ikcl~n-v-~~~iliAgcsaeSTVKl~DaRsce~~---------~-  865 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGR--LLAQME---DAPKEGAGGNIKCLEN-V-DRHILIAGCSAESTVKLFDARSCEWT---------C-  865 (1034)
T ss_pred             cCcceeecccccc--hhHhhh---cCcccCCCceeEeccc-C-cchheeeeccchhhheeeecccccce---------e-
Confidence            8999999986532  110000   0011122233444421 1 3334 444478899999999886521         1 


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (763)
                        -        -.+...++-...+.+++..|. |++++++-+.|.|.+.|.|+++.+....    |.+|           
T Consensus       866 --E--------~kVcna~~Pna~~R~iaVa~~-GN~lAa~LSnGci~~LDaR~G~vINswr----pmec-----------  919 (1034)
T KOG4190|consen  866 --E--------LKVCNAPGPNALTRAIAVADK-GNKLAAALSNGCIAILDARNGKVINSWR----PMEC-----------  919 (1034)
T ss_pred             --e--------EEeccCCCCchheeEEEeccC-cchhhHHhcCCcEEEEecCCCceeccCC----cccc-----------
Confidence              1        122333444567889999996 7999999999999999999997664431    0011           


Q ss_pred             CCCCccceeEEEEcCCCCEEEEEeCCCeEEE-EECCC
Q 004290          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL-MDVNH  310 (763)
Q Consensus       275 ~g~~~~~i~~v~~spdg~~l~~~s~d~~i~i-wd~~~  310 (763)
                            ....++ .|..+.|+....|.++.+ |-...
T Consensus       920 ------dllqla-apsdq~L~~saldHslaVnWhald  949 (1034)
T KOG4190|consen  920 ------DLLQLA-APSDQALAQSALDHSLAVNWHALD  949 (1034)
T ss_pred             ------hhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence                  122222 345566666667777777 76555

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.95  E-value=2e-09  Score=72.92  Aligned_cols=39  Identities=23%  Similarity=0.570  Sum_probs=37.7

Q ss_pred             CcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEc
Q 004290          659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT  697 (763)
Q Consensus       659 g~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~  697 (763)
                      |+++++|++|.+.|++|+|+|++.+|||+|.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            578999999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.94  E-value=2.4e-07  Score=100.21  Aligned_cols=229  Identities=13%  Similarity=0.076  Sum_probs=128.6

Q ss_pred             eeccccCceEEEEeCCCCCEEE---EEeCC--CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-CC-
Q 004290           45 ELEGHQGCVNAISWNSKGSLLI---SGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA-  117 (763)
Q Consensus        45 ~l~gH~~~V~~l~fsp~g~~La---sgs~D--~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-dg-  117 (763)
                      .|......+.+=+|+|||+.++   +...+  ..|.+.++.+++.....  ...+.....+|+|+  |+.|+..+. +| 
T Consensus       179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPD--G~~Laf~s~~~g~  254 (428)
T PRK01029        179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPR--KKLLAFISDRYGN  254 (428)
T ss_pred             EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee--cCCCCccceEECCC--CCEEEEEECCCCC
Confidence            3444555667789999997532   33333  35777788877643322  23445567899999  677766543 23 


Q ss_pred             ---cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEEC--CCCCCCCCCCCCCcc
Q 004290          118 ---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF--RQGSSCPPAGSSHQE  192 (763)
Q Consensus       118 ---~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~~~~~~  192 (763)
                         .+.+|++..+...       .+..............+|+|++..++++...+|...+|.+  ......         
T Consensus       255 ~di~~~~~~~~~g~~g-------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~---------  318 (428)
T PRK01029        255 PDLFIQSFSLETGAIG-------KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS---------  318 (428)
T ss_pred             cceeEEEeecccCCCC-------cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc---------
Confidence               3444666542111       1122222223345678999955444444445676555543  221100         


Q ss_pred             cceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---CcEEEEeCCCCCCCcccCCCCCCCCccccccc
Q 004290          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (763)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  269 (763)
                                  ...+.   .....+....|+|+ ++.|+..+.+   ..|.+||+.+++.....               
T Consensus       319 ------------~~~lt---~~~~~~~~p~wSPD-G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt---------------  367 (428)
T PRK01029        319 ------------PRLLT---KKYRNSSCPAWSPD-GKKIAFCSVIKGVRQICVYDLATGRDYQLT---------------  367 (428)
T ss_pred             ------------eEEec---cCCCCccceeECCC-CCEEEEEEcCCCCcEEEEEECCCCCeEEcc---------------
Confidence                        00111   11224567889998 5666655433   36899999876531100               


Q ss_pred             ccccCCCCCccceeEEEEcCCCCEEEEEeC---CCeEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004290          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (763)
Q Consensus       270 ~~~~~~g~~~~~i~~v~~spdg~~l~~~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (763)
                           .+.  ..+....|+|||++|+....   ...|++||+.+++.... ..........+|+|.
T Consensus       368 -----~~~--~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L-t~~~g~~~~p~Ws~~  425 (428)
T PRK01029        368 -----TSP--ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI-VIGSGEKRFPSWGAF  425 (428)
T ss_pred             -----CCC--CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCcccCceecCC
Confidence                 011  13567899999998886543   45799999988653332 233334456677764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.94  E-value=4.3e-09  Score=121.11  Aligned_cols=192  Identities=14%  Similarity=0.202  Sum_probs=154.5

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~  127 (763)
                      -|-..|.++.=+|...+.+||+.||.|++|....+..+..+.......|+.+.|+..  |+.+..+..||.+.+|.... 
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ--GNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc--CCceeeeccCCceeecccCC-
Confidence            345678888888888999999999999999999998888876666689999999999  78999999999999999883 


Q ss_pred             CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe---CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                                ++....+.|.....+..|-.   ..+++++   .++.+.+||.-.....           ..        
T Consensus      2283 ----------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~-----------s~-------- 2330 (2439)
T KOG1064|consen 2283 ----------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMN-----------SL-------- 2330 (2439)
T ss_pred             ----------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCccc-----------ce--------
Confidence                      55777889999999999964   5676765   4789999996544311           00        


Q ss_pred             eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (763)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  284 (763)
                         +  ...|...++++++.|. .++|++|+.+|.|++||++..+.+..+                            ..
T Consensus      2331 ---v--~~~H~~gaT~l~~~P~-~qllisggr~G~v~l~D~rqrql~h~~----------------------------~~ 2376 (2439)
T KOG1064|consen 2331 ---V--HTCHDGGATVLAYAPK-HQLLISGGRKGEVCLFDIRQRQLRHTF----------------------------QA 2376 (2439)
T ss_pred             ---e--eeecCCCceEEEEcCc-ceEEEecCCcCcEEEeehHHHHHHHHh----------------------------hh
Confidence               1  1357888999999997 689999999999999999976544322                            11


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          285 VTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       285 v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                        ++ ...++++++..|.|+||++...
T Consensus      2377 --~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2377 --LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             --hh-hhheeeccCcccceEEEEcccc
Confidence              34 5578999999999999999885

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.93  E-value=1.3e-07  Score=103.26  Aligned_cols=201  Identities=14%  Similarity=0.111  Sum_probs=123.3

Q ss_pred             CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---CcEEEEECCCCCCCCCCCCCCCCceeeecccC
Q 004290           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (763)
Q Consensus        72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (763)
                      ..|.++|..... ...+ ..+...+.+.+|+|+  ++.|+.+..+   ..|++||+.++.           ...+..+.+
T Consensus       170 ~~l~~~d~~g~~-~~~l-~~~~~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~-----------~~~~~~~~~  234 (417)
T TIGR02800       170 YELQVADYDGAN-PQTI-TRSREPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQ-----------REKVASFPG  234 (417)
T ss_pred             ceEEEEcCCCCC-CEEe-ecCCCceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCC-----------EEEeecCCC
Confidence            358888876443 3444 356667899999999  7888877654   479999998632           223334556


Q ss_pred             ceeEEEEecCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004290          149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (763)
Q Consensus       149 ~v~~l~~sp~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~  226 (763)
                      .+..++|+|++..++++.+.++  .|++||+.+++..                       .+..   +........|+|+
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-----------------------~l~~---~~~~~~~~~~s~d  288 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-----------------------RLTN---GPGIDTEPSWSPD  288 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-----------------------ECCC---CCCCCCCEEECCC
Confidence            6778999996545555666555  5888888765411                       0110   1112335679997


Q ss_pred             CCcEEEEEeC-CC--cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC--
Q 004290          227 RPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--  301 (763)
Q Consensus       227 ~~~~l~sgs~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~--  301 (763)
                       ++.|+..+. ++  .|.++|+.+++... +                  ..  +. ..+..+.|+|+|++|+.++.++  
T Consensus       289 -g~~l~~~s~~~g~~~iy~~d~~~~~~~~-l------------------~~--~~-~~~~~~~~spdg~~i~~~~~~~~~  345 (417)
T TIGR02800       289 -GKSIAFTSDRGGSPQIYMMDADGGEVRR-L------------------TF--RG-GYNASPSWSPDGDLIAFVHREGGG  345 (417)
T ss_pred             -CCEEEEEECCCCCceEEEEECCCCCEEE-e------------------ec--CC-CCccCeEECCCCCEEEEEEccCCc
Confidence             566665543 33  47777776543110 0                  00  11 1366788999999999988876  


Q ss_pred             -eEEEEECCCCCccceEeecCCCCeeeeeccCCCCccc
Q 004290          302 -HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL  338 (763)
Q Consensus       302 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  338 (763)
                       .|++||+.++... .. ..........|+|+...+.+
T Consensus       346 ~~i~~~d~~~~~~~-~l-~~~~~~~~p~~spdg~~l~~  381 (417)
T TIGR02800       346 FNIAVMDLDGGGER-VL-TDTGLDESPSFAPNGRMILY  381 (417)
T ss_pred             eEEEEEeCCCCCeE-Ec-cCCCCCCCceECCCCCEEEE
Confidence             8999999874322 11 11222334567777665543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.91  E-value=8.3e-09  Score=108.92  Aligned_cols=163  Identities=16%  Similarity=0.279  Sum_probs=124.8

Q ss_pred             ceEEEEeCCCC--CEEEEEeCCCcEEEEeCCC--CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004290           52 CVNAISWNSKG--SLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (763)
Q Consensus        52 ~V~~l~fsp~g--~~Lasgs~D~~v~iWd~~~--~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~  127 (763)
                      .|-.+.|+|..  .+-+.........+|++..  ...+.-++.+|...|+.+.|+|.. ...+++++.|..|..||++..
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp  147 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSP  147 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCC
Confidence            36677888743  3444444556678999864  334444447999999999999986 889999999999999999975


Q ss_pred             CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (763)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (763)
                      .         .++..+.........++|+..+++.+++ +....|++||++.+..+                        
T Consensus       148 ~---------~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~p------------------------  193 (1081)
T KOG0309|consen  148 H---------RPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTP------------------------  193 (1081)
T ss_pred             C---------cceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCCcc------------------------
Confidence            4         4566666667778899999988888855 45578999999988632                        


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      +....+|...|+.++|+......+.+.+.|++|+.||.....
T Consensus       194 l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  194 LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             eEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence            333345778889999987655688999999999999988643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.89  E-value=6.8e-08  Score=100.46  Aligned_cols=194  Identities=15%  Similarity=0.142  Sum_probs=142.5

Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcc--CCCCceEEEEEeeC------------------CCCcEEEEEeCCCc
Q 004290           59 NSKGSLLISGSDDTHINVWSYSSRKLLHSIET--GHSANVFCTKFVPE------------------TSDELVVSGAGDAE  118 (763)
Q Consensus        59 sp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~--~h~~~V~~v~~~p~------------------~~~~~l~s~s~dg~  118 (763)
                      .|-+.++|....||.++|||..+++....|..  .-++..++..|.-.                  .+...++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            34567999999999999999999887776632  12345555555421                  01346788888999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  198 (763)
                      |.+|++..+.-        .....-.+|.+.|+++.++. .-..|.|++.|+.+..|+.......               
T Consensus        82 v~~ys~~~g~i--------t~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~---------------  137 (541)
T KOG4547|consen   82 VLLYSVAGGEI--------TAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVII---------------  137 (541)
T ss_pred             EEEEEecCCeE--------EEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceee---------------
Confidence            99999986431        11222247999999999987 6679999999999999998876521               


Q ss_pred             ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (763)
                                +........+.+++.+|+ +..+++++  +.|++||+.+++.+.+|                    .||.
T Consensus       138 ----------~~~~~~~~~~~sl~is~D-~~~l~~as--~~ik~~~~~~kevv~~f--------------------tgh~  184 (541)
T KOG4547|consen  138 ----------RIWKEQKPLVSSLCISPD-GKILLTAS--RQIKVLDIETKEVVITF--------------------TGHG  184 (541)
T ss_pred             ----------eeeccCCCccceEEEcCC-CCEEEecc--ceEEEEEccCceEEEEe--------------------cCCC
Confidence                      112234556789999998 78898887  68999999998766554                    5566


Q ss_pred             ccceeEEEEcCC-----CCEEEEEeC-CCeEEEEECCC
Q 004290          279 SLHLTHVTFSPN-----GEEVLLSYS-GEHVYLMDVNH  310 (763)
Q Consensus       279 ~~~i~~v~~spd-----g~~l~~~s~-d~~i~iwd~~~  310 (763)
                      + +|+++.|--+     |.+++++.. +..|.+|-+..
T Consensus       185 s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  185 S-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             c-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            6 6999999876     788777665 67788887765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=8.9e-07  Score=94.61  Aligned_cols=233  Identities=12%  Similarity=0.100  Sum_probs=151.1

Q ss_pred             hhccccceeeccccCceEEEEeCCC------------CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeC
Q 004290           37 VRRLSQERELEGHQGCVNAISWNSK------------GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (763)
Q Consensus        37 ~~~~~~~~~l~gH~~~V~~l~fsp~------------g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~  104 (763)
                      ...++.+..+.-|...|+.+.|.|-            .-+||++.-.|.|.|||...+..+..+ ..|..++..++|.|.
T Consensus        42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~  120 (1062)
T KOG1912|consen   42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPA  120 (1062)
T ss_pred             hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeec
Confidence            4556788889999999999999872            136788888999999999998888888 788999999999985


Q ss_pred             CC--CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          105 TS--DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       105 ~~--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      .+  ...|+.-....+|.+|+..++.          .+.....-.....|+.+.|.+.+.|..-+..|.+.+-+.-..+.
T Consensus       121 rd~Srd~LlaIh~ss~lvLwntdtG~----------k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~se  190 (1062)
T KOG1912|consen  121 RDDSRDVLLAIHGSSTLVLWNTDTGE----------KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSE  190 (1062)
T ss_pred             cCcchheeEEecCCcEEEEEEccCCc----------eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCC
Confidence            42  2467777778899999998753          24445444566777999998888777777778887776544332


Q ss_pred             CCCCCCCCcccceEEEecCCCce------------eeccCCCCCccc---eEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAK------------RSLADPPKQTLS---LKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~---v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                      ..        .....+.+...+.            ......+.....   ...++|+|.-.+.++ ......+.++|++-
T Consensus       191 p~--------~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf-i~~prellv~dle~  261 (1062)
T KOG1912|consen  191 PD--------VPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF-ITFPRELLVFDLEY  261 (1062)
T ss_pred             CC--------CCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE-EEeccceEEEcchh
Confidence            10        0000110000000            000011111111   123567886444444 34567788999986


Q ss_pred             CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC--CEEEEEeCCCeEEEEECCC
Q 004290          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg--~~l~~~s~d~~i~iwd~~~  310 (763)
                      ...+....-                    .++ .+.-+.+-|++  ..|++...||.+.+|--+.
T Consensus       262 ~~~l~vvpi--------------------er~-~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  262 ECCLAVVPI--------------------ERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hceeEEEEe--------------------ccC-CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            654433211                    111 24446666665  5688999999999997655

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.87  E-value=5.5e-08  Score=101.12  Aligned_cols=64  Identities=13%  Similarity=0.319  Sum_probs=57.5

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCC-----C-CeEEEEeCCCcEEEEcCCC
Q 004290          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPF-----D-CVVATSGIDNTIKIWTPSA  700 (763)
Q Consensus       635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~-----~-~~laS~s~D~~IrvW~~~~  700 (763)
                      .+|||+.|++||  +.|++||+++++.+..|.||.++|++++|--.     | .+|.+...+.-|.+|-+..
T Consensus       152 is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  152 ISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            799999999998  56999999999999999999999999999987     3 5777788888999997766

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.87  E-value=1.3e-06  Score=104.12  Aligned_cols=68  Identities=10%  Similarity=0.055  Sum_probs=57.8

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEec--------------CCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCC
Q 004290          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLG--------------DEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA  700 (763)
Q Consensus       635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~g--------------H~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~  700 (763)
                      ++++|+.+++-+.+++|++||.+++.+.. +.|              +-....+|+++++++++++-+.++.|++|++.+
T Consensus       811 vd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        811 CAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             EeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            78999999999999999999999887654 333              223577999999999999999999999999988


Q ss_pred             CCC
Q 004290          701 SVP  703 (763)
Q Consensus       701 ~~~  703 (763)
                      ...
T Consensus       890 ~~~  892 (1057)
T PLN02919        890 GEA  892 (1057)
T ss_pred             Ccc
Confidence            765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.86  E-value=2.7e-06  Score=101.54  Aligned_cols=232  Identities=11%  Similarity=0.071  Sum_probs=132.5

Q ss_pred             EEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcc-CC------------CCceEEEEEeeCCCCcEEEE-EeCCCc
Q 004290           54 NAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIET-GH------------SANVFCTKFVPETSDELVVS-GAGDAE  118 (763)
Q Consensus        54 ~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~-~h------------~~~V~~v~~~p~~~~~~l~s-~s~dg~  118 (763)
                      ..+++++ ++.++++-+.++.|++||... ..+..+-. +.            -.....+++.++  ++.|+. -...+.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTENHA  647 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCCce
Confidence            3678877 466777778889999999864 44444411 11            123578999998  455444 445678


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeec-----------------ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQC-----------------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~-----------------h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~  181 (763)
                      |+++|+.+..           +.++.+                 .-.....|+++|+++.++++.+.++.|++||..++.
T Consensus       648 Ir~id~~~~~-----------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        648 LREIDFVNET-----------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             EEEEecCCCE-----------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence            9999986532           111110                 012346899999777788888889999999987754


Q ss_pred             CCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC
Q 004290          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (763)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (763)
                      .......+..      . ...+..    ...........++|+|++..++++-+.++.|++||+.++............+
T Consensus       717 v~~~~G~G~~------~-~~~g~~----~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~  785 (1057)
T PLN02919        717 TRVFSGDGYE------R-NLNGSS----GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS  785 (1057)
T ss_pred             EEEEecCCcc------c-cCCCCc----cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence            2100000000      0 000000    0001123457899999854466667778999999998754211000000000


Q ss_pred             Cccccccccc-ccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          262 PCVNYFCPMH-LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       262 ~~~~~~~~~~-~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .....+.... ......-. .-.+++++++|..+++-+.++.|++||..++
T Consensus       786 ~~l~~fG~~dG~g~~~~l~-~P~Gvavd~dG~LYVADs~N~rIrviD~~tg  835 (1057)
T PLN02919        786 DNLFKFGDHDGVGSEVLLQ-HPLGVLCAKDGQIYVADSYNHKIKKLDPATK  835 (1057)
T ss_pred             cccccccCCCCchhhhhcc-CCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence            0000000000 00000001 2468999999998888888999999999874

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.83  E-value=7.4e-07  Score=83.64  Aligned_cols=212  Identities=12%  Similarity=0.050  Sum_probs=137.1

Q ss_pred             EEEeCC-----CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           55 AISWNS-----KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        55 ~l~fsp-----~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      .+.|-|     ...+||.|+.-|...+|.+.+.+....+-..|...|+-+.=.-+. ...+..++.|.++++.++.....
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~-~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL-KFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc-ccceeeccCCcceeEEEEecCcc
Confidence            456666     346899999999999999986553332213444433322211121 23466678899999999985321


Q ss_pred             CCCCCCCCCCceeeecccCc--eeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290          130 RGLDDNAITPSALYQCHTRR--VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (763)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (763)
                                  .+.-|...  +.++++++ ++.++++.+....|..|.+......         ... ++         
T Consensus       151 ------------~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey---------~~~-~~---------  198 (344)
T KOG4532|consen  151 ------------KFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEY---------IEN-IY---------  198 (344)
T ss_pred             ------------cceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccce---------eee-eE---------
Confidence                        12224333  78899999 7799999999999999988765421         000 00         


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (763)
Q Consensus       208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~  287 (763)
                      +   ......-.+..|+.. ...||++..||++.|||+|............                +.|..+.+..+.|
T Consensus       199 ~---a~t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst----------------rp~hnGa~R~c~F  258 (344)
T KOG4532|consen  199 E---APTSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNMATPMAEISST----------------RPHHNGAFRVCRF  258 (344)
T ss_pred             e---cccCCCceeeeeccC-cceEEEEecCCcEEEEEecccccchhhhccc----------------CCCCCCceEEEEe
Confidence            0   011223356778886 5799999999999999999765322111111                2244447999999


Q ss_pred             cCCCC--EEEEEeCCCeEEEEECCCCCccceEee
Q 004290          288 SPNGE--EVLLSYSGEHVYLMDVNHAGGRAMRYT  319 (763)
Q Consensus       288 spdg~--~l~~~s~d~~i~iwd~~~~~~~~~~~~  319 (763)
                      ++-|.  +|+..-.-+.+.+-|+++....+....
T Consensus       259 sl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i  292 (344)
T KOG4532|consen  259 SLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI  292 (344)
T ss_pred             cCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence            98663  466666688999999999775544433

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=2.3e-06  Score=88.26  Aligned_cols=110  Identities=11%  Similarity=0.167  Sum_probs=78.4

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-----------CCcEEE
Q 004290           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-----------DAEVRL  121 (763)
Q Consensus        53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-----------dg~I~i  121 (763)
                      =+-+.|||-|.+|+|--.- -|.+|--++-..++.|  .|. .|.-+.|+|.  .++|+|=+.           ...++|
T Consensus       213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF--~Hp-~Vq~idfSP~--EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRF--YHP-GVQFIDFSPN--EKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeeEEecCCceEEEEEecc-ceeeecCccHHHHHhc--cCC-CceeeecCCc--cceEEEecCCccccCcccCCCceEEE
Confidence            3568999999999998775 4789987666667776  465 5889999999  799999653           256999


Q ss_pred             EECCCCCCCCCCCCCCCCceeeec--ccCceeE-EEEecCCCCEEEEEeCCCcEEEEECCCC
Q 004290          122 FNLSRFSGRGLDDNAITPSALYQC--HTRRVKK-LAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (763)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~-l~~sp~~~~~l~s~s~dg~i~iwd~~~~  180 (763)
                      ||+.++..          .+.|..  ....+.- ..||. +..++|-... .+|.||+..+.
T Consensus       287 WDI~tG~l----------krsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf  336 (698)
T KOG2314|consen  287 WDIATGLL----------KRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSF  336 (698)
T ss_pred             EEccccch----------hcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCce
Confidence            99998532          333332  2222333 47888 5578876665 57888886653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.69  E-value=5e-06  Score=90.00  Aligned_cols=70  Identities=13%  Similarity=0.035  Sum_probs=51.9

Q ss_pred             ccCCCCEEEEecCC---CcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEE-EeC--CCcEEEEcCCCCCCcc
Q 004290          635 LGQRGDYIASGSDD---GRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVAT-SGI--DNTIKIWTPSASVPSI  705 (763)
Q Consensus       635 ~s~d~~~l~sgs~D---g~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS-~s~--D~~IrvW~~~~~~~~~  705 (763)
                      |||||++|+..+.+   ..|++||+++|+... |......+....|+|++++|+- +..  ...|.+|++.+++...
T Consensus       334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~  409 (428)
T PRK01029        334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK  409 (428)
T ss_pred             ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence            89999998876543   469999999998754 4433456788999999987764 332  4578899998876543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.68  E-value=4.1e-08  Score=66.40  Aligned_cols=38  Identities=39%  Similarity=0.834  Sum_probs=36.5

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEe
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS   78 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd   78 (763)
                      +++++|++|.+.|++|+|+|++.+|++|+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=2.5e-07  Score=92.84  Aligned_cols=278  Identities=13%  Similarity=0.101  Sum_probs=180.0

Q ss_pred             cccccccccchhhh-hccccceeeccccCceEEEEeCCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEccCCCCceEEEEE
Q 004290           24 PDVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKF  101 (763)
Q Consensus        24 ~~~~~~~~~~~~~~-~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~-D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~  101 (763)
                      +..+..++.|...- ...+.++.++.|.+.|.+++.+-+|.+++|++. |+.++++|+++-..+.-+.  -....-.+.|
T Consensus        26 ASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiK--L~~lPg~a~w  103 (558)
T KOG0882|consen   26 ASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIK--LVDLPGFAEW  103 (558)
T ss_pred             eecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcc--cccCCCceEE
Confidence            45567777777554 556777888999999999999999999999887 9999999998755442221  1111223334


Q ss_pred             eeCCCC----cEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004290          102 VPETSD----ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (763)
Q Consensus       102 ~p~~~~----~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~  177 (763)
                      .... |    .+-++...++.|.++|-.....        +....-+-|..+|.++.+.| -+..+++....|.|.-|..
T Consensus       104 v~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~--------q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~  173 (558)
T KOG0882|consen  104 VTSK-GDKISLIAVSLFKSGKIFVVDGFGDFC--------QDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSA  173 (558)
T ss_pred             ecCC-CCeeeeEEeecccCCCcEEECCcCCcC--------ccceecccccCceEEEEeec-cccceeeccccceeEeecC
Confidence            3332 3    2334445689999999875321        22344456999999999999 5678888888999999987


Q ss_pred             CCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCC
Q 004290          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  257 (763)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~  257 (763)
                      ...-+-+        -....+.++  +..-+..++.......++.|+|+ +..+.+-+.|..||+++..+++.+..+...
T Consensus       174 e~~~qfP--------r~~l~~~~K--~eTdLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGklvqeiDE~  242 (558)
T KOG0882|consen  174 EGPFQFP--------RTNLNFELK--HETDLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGKLVQEIDEV  242 (558)
T ss_pred             CCcccCc--------ccccccccc--ccchhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccchhhhhhhcc
Confidence            7411000        001111111  11224444556677889999998 789999999999999999999987766543


Q ss_pred             CCCCCcccc--ccccccc----------CCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCe
Q 004290          258 MSPPPCVNY--FCPMHLS----------EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASK  325 (763)
Q Consensus       258 ~~~~~~~~~--~~~~~~~----------~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  325 (763)
                      .....+...  +.-.+..          ..-+....-+.++|...|++|+.++-=| |++.++.+. .....++..+.++
T Consensus       243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn-~v~ri~gk~e~ir  320 (558)
T KOG0882|consen  243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN-TVVRILGKDEAIR  320 (558)
T ss_pred             chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC-eEEEEeccchhhh
Confidence            221111110  0001100          0123333567788999999999887654 788899884 3455555555444


Q ss_pred             e
Q 004290          326 I  326 (763)
Q Consensus       326 ~  326 (763)
                      .
T Consensus       321 ~  321 (558)
T KOG0882|consen  321 F  321 (558)
T ss_pred             h
Confidence            3

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.66  E-value=8.3e-07  Score=88.30  Aligned_cols=162  Identities=16%  Similarity=0.178  Sum_probs=111.2

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe----EEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---CCcEEEEEC
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNL  124 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~----~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---dg~I~iwd~  124 (763)
                      .+..+..++.+++||.+..++...++++....    .+...  .-....+++.|..+  ......+..   ...+.+|..
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~--~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIRE--DTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeec--cceEEEEeecCCceeeeeecc
Confidence            34456677889999998888887777765432    22222  22334456666655  344444433   444555554


Q ss_pred             CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                      ..+           +...+-+|-..++.|+|+| ++++|+++..|..|++-.......+                     
T Consensus       140 ~~~-----------~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~I---------------------  186 (390)
T KOG3914|consen  140 DSG-----------RCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVI---------------------  186 (390)
T ss_pred             ccc-----------CcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccch---------------------
Confidence            431           1344568999999999999 5589999999999999765443211                     


Q ss_pred             eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccC
Q 004290          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (763)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~  255 (763)
                         -...-+|+..|..++.-++  +.|++|+.|++|++||+++++.+.++.
T Consensus       187 ---esfclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  187 ---ESFCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             ---hhhccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccc
Confidence               1112368889999999985  579999999999999999999887664

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.65  E-value=2.1e-05  Score=75.56  Aligned_cols=230  Identities=14%  Similarity=0.142  Sum_probs=132.5

Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEeCCCC--eEEEE--EccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004290           56 ISWNSKGSLLISGSDDTHINVWSYSSR--KLLHS--IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (763)
Q Consensus        56 l~fsp~g~~Lasgs~D~~v~iWd~~~~--~~~~~--~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~  131 (763)
                      ++.+++|++||.- .|..|.|=.....  ..+.+  +.....-.-..++|+|+  +.+||.+...|+|+++|+.......
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~lf~   79 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSELFV   79 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccceeEE
Confidence            5677899988876 4567777654432  12222  22222334578999999  7999999999999999998422111


Q ss_pred             CCCCCCCCceee-ecccCceeEEEEecCC-----CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004290          132 LDDNAITPSALY-QCHTRRVKKLAVEVGN-----PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (763)
Q Consensus       132 ~~~~~~~~~~~~-~~h~~~v~~l~~sp~~-----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (763)
                      .     .+...+ ..-...|..|.|.+..     ...|+....+|.++=|-+..+....       ...          .
T Consensus        80 I-----~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~-------y~e----------~  137 (282)
T PF15492_consen   80 I-----PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG-------YQE----------N  137 (282)
T ss_pred             c-----CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc-------cee----------e
Confidence            0     111111 1124567777775422     2245566677877777654322110       000          0


Q ss_pred             eeccCCCCCccceEEEEEeCCCCcEEEEEeCC-----------CcEEEEeCCCCCCCcccCCCCCCC-------Cccccc
Q 004290          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----------AFARLYDRRMLPPLTSCQKRMSPP-------PCVNYF  267 (763)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D-----------g~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~  267 (763)
                      ..+.........|.++.++|. .++|++|+..           .-+.-|.+-++.+...........       .+...+
T Consensus       138 hsfsf~~~yp~Gi~~~vy~p~-h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~  216 (282)
T PF15492_consen  138 HSFSFSSHYPHGINSAVYHPK-HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI  216 (282)
T ss_pred             EEEEecccCCCceeEEEEcCC-CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence            111222234568999999997 4677776531           236677776665543321111100       011111


Q ss_pred             ccccc-cCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          268 CPMHL-SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       268 ~~~~~-~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ....+ ...+.....|..|..||||..|++...+|.|.+|++.+-
T Consensus       217 ~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  217 PSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             cceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence            11111 111222335999999999999999999999999999884

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.64  E-value=8.4e-08  Score=110.94  Aligned_cols=153  Identities=18%  Similarity=0.248  Sum_probs=119.8

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe---CCCcEEEEECCCC
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA---GDAEVRLFNLSRF  127 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s---~dg~I~iwd~~~~  127 (763)
                      ..|+.+.|+.+|+.+..+..||.+.+|.+. .+..... +.|......+.|..    ..+++++   .++.+.+||....
T Consensus      2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~-qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW-QCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred             chhhhhhhcccCCceeeeccCCceeecccC-Ccceecc-ccCCccccceeeee----hhhhccccCCCCCcccchhcccC
Confidence            778889999999999999999999999987 3444344 68998899999984    4677765   4788999998754


Q ss_pred             CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (763)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (763)
                      ...       .++.  .+|.+.++++++.| ...+|++||.+|.|++||++..+..                        
T Consensus      2326 ~~~-------s~v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~------------------------ 2371 (2439)
T KOG1064|consen 2326 PMN-------SLVH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLR------------------------ 2371 (2439)
T ss_pred             ccc-------ceee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHH------------------------
Confidence            322       1233  78999999999999 6689999999999999999987643                        


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccC
Q 004290          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (763)
Q Consensus       208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~  255 (763)
                            |....    ++ . ..+|++|+..|.|+||++.....+.+++
T Consensus      2372 ------h~~~~----~~-~-~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2372 ------HTFQA----LD-T-REYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             ------HHhhh----hh-h-hheeeccCcccceEEEEccccchhhcCc
Confidence                  11111    33 2 4699999999999999999876665553

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.64  E-value=3.2e-08  Score=106.49  Aligned_cols=213  Identities=15%  Similarity=0.172  Sum_probs=146.9

Q ss_pred             ccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCc
Q 004290           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE  108 (763)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~  108 (763)
                      ...-.....++++.++.|+.|+...+|++|+-+.+.|+.|+-.|.|+++++.+|...... .+|..+|+-+.=+-+  |.
T Consensus      1080 ~~~dr~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~d--gs 1156 (1516)
T KOG1832|consen 1080 NRRDRQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVD--GS 1156 (1516)
T ss_pred             CcccchhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-cccccccccccccCC--cc
Confidence            333344567789999999999999999999999999999999999999999999888877 799999999998888  45


Q ss_pred             EEEEE-eCCC-cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290          109 LVVSG-AGDA-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (763)
Q Consensus       109 ~l~s~-s~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  186 (763)
                      .+++. +... -..+|++....         .+.++|.    .-.++.|+.. ...-+.|..-....+||+.++..+...
T Consensus      1157 ~~Ltsss~S~PlsaLW~~~s~~---------~~~Hsf~----ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTG---------GPRHSFD----EDKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred             eeeeeccccCchHHHhcccccc---------Ccccccc----ccceeehhhh-HHHHHhcccccceEEEecccCcHHHHh
Confidence            55444 4443 57899988521         2244443    3467888763 333334445567889999998754221


Q ss_pred             CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004290          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (763)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (763)
                      .++.                     ......-++..|+|.+ .+++   .||  .+||+|..+.+..|..-         
T Consensus      1223 lt~~---------------------~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~aIh~FD~f--------- 1266 (1516)
T KOG1832|consen 1223 LTDT---------------------VTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEAIHRFDQF--------- 1266 (1516)
T ss_pred             cCcc---------------------hhhhhhccccccCCCc-ceEe---eCc--eeeeeccHHHHhhhhhh---------
Confidence            1110                     0112233678899974 4554   455  48999987655443210         


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                          ..  .      + .=.|+|.|..++..+     .|||+++.+
T Consensus      1267 ----t~--~------~-~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1267 ----TD--Y------G-GGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred             ----ee--c------c-cccccCCCceEEeec-----hhhhhHHHH
Confidence                00  0      1 124999999998876     689999954

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.64  E-value=3.3e-07  Score=85.64  Aligned_cols=170  Identities=15%  Similarity=0.132  Sum_probs=107.2

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEccCCCCceEEEEEeeCCCCcEEEEEeC----
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGAG----  115 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~----  115 (763)
                      .+.+.+..|+++=.+-+.+--++.++++..||.+.+.+.+.-. ..+.+..-|.+. .+.++...  ++.+.++..    
T Consensus        80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~--~~~i~s~~~g~~n  156 (319)
T KOG4714|consen   80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRH--GNSILSGGCGNWN  156 (319)
T ss_pred             CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeec--ccEEecCCcceEe
Confidence            3444444444433333333456789999999999999976521 111221112211 22223333  344443321    


Q ss_pred             -CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          116 -DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       116 -dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                       -+..++|+++..+.          +..-+.-...|.+++-+|...+++++|+.||.+-+||.|....+           
T Consensus       157 ~~d~~~a~~~~p~~t----------~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p-----------  215 (319)
T KOG4714|consen  157 AQDNFYANTLDPIKT----------LIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP-----------  215 (319)
T ss_pred             eccceeeeccccccc----------ccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccch-----------
Confidence             23456666664210          11111123349999999987788999999999999999987532           


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                                   ......|...++-+-|+|.++..|++++.||.+..||..+
T Consensus       216 -------------~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  216 -------------VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             -------------HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence                         2223457788999999999999999999999999999885

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=6.1e-06  Score=85.58  Aligned_cols=196  Identities=11%  Similarity=0.115  Sum_probs=126.9

Q ss_pred             ccCceEEEEeCCCC--CEEEE-----EeCCCcEEEEeCCCCeE-----EEEEccCCCCceEEEEEeeCCCCcEEEEEe--
Q 004290           49 HQGCVNAISWNSKG--SLLIS-----GSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPETSDELVVSGA--  114 (763)
Q Consensus        49 H~~~V~~l~fsp~g--~~Las-----gs~D~~v~iWd~~~~~~-----~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s--  114 (763)
                      |...|+.+.+||.+  ..+|+     ++.-..|+||.+.....     .++|+   ...=..+.|++-+ ..+|+.++  
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF---kadkvqm~WN~~g-t~LLvLastd  239 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF---KADKVQMKWNKLG-TALLVLASTD  239 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc---ccceeEEEeccCC-ceEEEEEEEe
Confidence            57789999999864  34543     35667899998863221     12231   1222357788774 22333322  


Q ss_pred             CCC---------cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEE-EeCCCcEEEEECCCCCCCC
Q 004290          115 GDA---------EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSCP  184 (763)
Q Consensus       115 ~dg---------~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s-~s~dg~i~iwd~~~~~~~~  184 (763)
                      -|.         ++++.+++..          .....+ .-.++|+++.|+|.+..+.+. |-.--++.|||++..    
T Consensus       240 VDktn~SYYGEq~Lyll~t~g~----------s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----  304 (566)
T KOG2315|consen  240 VDKTNASYYGEQTLYLLATQGE----------SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----  304 (566)
T ss_pred             ecCCCccccccceEEEEEecCc----------eEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----
Confidence            233         4677766621          112222 247899999999955444333 445678999998754    


Q ss_pred             CCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---CcEEEEeCCCCCCCcccCCCCCCC
Q 004290          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPP  261 (763)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---g~i~iwd~~~~~~~~~~~~~~~~~  261 (763)
                                 .++++..             ++=+++-|+|. |++|+.++.+   |.|-|||+.+.+.+..+..     
T Consensus       305 -----------~v~df~e-------------gpRN~~~fnp~-g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-----  354 (566)
T KOG2315|consen  305 -----------PVFDFPE-------------GPRNTAFFNPH-GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-----  354 (566)
T ss_pred             -----------EeEeCCC-------------CCccceEECCC-CCEEEEeecCCCCCceEEEeccchhhcccccc-----
Confidence                       2333322             34568889997 7888887765   7899999998766544321     


Q ss_pred             CcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC------CCeEEEEECCCC
Q 004290          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHA  311 (763)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~------d~~i~iwd~~~~  311 (763)
                                        ..-+-+.|+|||+++++++.      |+.++||+....
T Consensus       355 ------------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  355 ------------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             ------------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence                              13567899999999999875      789999999874

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.59  E-value=0.00014  Score=74.89  Aligned_cols=72  Identities=11%  Similarity=0.081  Sum_probs=58.5

Q ss_pred             ccCCCCEEEEec----------CCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCC-eEEEEe-CCCcEEEEcCCCCC
Q 004290          635 LGQRGDYIASGS----------DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSG-IDNTIKIWTPSASV  702 (763)
Q Consensus       635 ~s~d~~~l~sgs----------~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~-~laS~s-~D~~IrvW~~~~~~  702 (763)
                      +++|+++|+...          ..+.|.++|.+|++.+..+.- ...+..++++||++ +|.+.. .++.|.+.|..+.+
T Consensus       255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence            788888777642          125799999999999998874 34799999999998 777555 68999999999998


Q ss_pred             Ccccc
Q 004290          703 PSIVS  707 (763)
Q Consensus       703 ~~~~~  707 (763)
                      .+...
T Consensus       334 ~i~~i  338 (352)
T TIGR02658       334 ELSSV  338 (352)
T ss_pred             EEeee
Confidence            88765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.58  E-value=6e-06  Score=87.51  Aligned_cols=159  Identities=13%  Similarity=0.177  Sum_probs=119.0

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE---------------EEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---------------LHSIETGHSANVFCTKFVPETSDELVVSGA  114 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~---------------~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s  114 (763)
                      .....|++|+....++|.|+.||.++|..+.+...               -+++ .||...|.-+.|+.+  .+.|-++.
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe~--~QKLTtSD   90 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNEN--NQKLTTSD   90 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEeccc--cccccccC
Confidence            35678999999999999999999999998865321               1233 699999999999988  68999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      .+|.|.+|-+-.++...        ...-...++.|.+|+|+. +|..+.....||.|.+=.+..+.             
T Consensus        91 t~GlIiVWmlykgsW~E--------EMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNR-------------  148 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCE--------EMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNR-------------  148 (1189)
T ss_pred             CCceEEEEeeecccHHH--------HHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccce-------------
Confidence            99999999998644211        122233567799999998 66888889999999887766543             


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                        +|.           ..-.......+.|+++ ...++.+-..|.+.+||...
T Consensus       149 --Iwg-----------KeLkg~~l~hv~ws~D-~~~~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  149 --IWG-----------KELKGQLLAHVLWSED-LEQALFKKANGETHLYDNQG  187 (1189)
T ss_pred             --ecc-----------hhcchheccceeeccc-HHHHHhhhcCCcEEEecccc
Confidence              111           1111223457889997 46777778889999999763

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.58  E-value=5.9e-05  Score=80.98  Aligned_cols=195  Identities=19%  Similarity=0.138  Sum_probs=109.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (763)
Q Consensus        61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (763)
                      .+..++.++.++.|.-+|..+|+.+..+. ..........  .+  +..++.++.++.+..+|..+++.          +
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~p~--v~--~~~v~v~~~~g~l~ald~~tG~~----------~  128 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVD-LDERLSGGVG--AD--GGLVFVGTEKGEVIALDAEDGKE----------L  128 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeec-CCCCcccceE--Ec--CCEEEEEcCCCEEEEEECCCCcE----------e
Confidence            36678888899999999999999887662 2221111222  23  46788888899999999987432          2


Q ss_pred             eeeecccCceeE-EEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceE
Q 004290          141 ALYQCHTRRVKK-LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK  219 (763)
Q Consensus       141 ~~~~~h~~~v~~-l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (763)
                      ..... .+.+.+ ....  + ..++.++.+|.|+.||.++++.              +|........ + .....    .
T Consensus       129 W~~~~-~~~~~~~p~v~--~-~~v~v~~~~g~l~a~d~~tG~~--------------~W~~~~~~~~-~-~~~~~----~  184 (377)
T TIGR03300       129 WRAKL-SSEVLSPPLVA--N-GLVVVRTNDGRLTALDAATGER--------------LWTYSRVTPA-L-TLRGS----A  184 (377)
T ss_pred             eeecc-CceeecCCEEE--C-CEEEEECCCCeEEEEEcCCCce--------------eeEEccCCCc-e-eecCC----C
Confidence            22221 122221 1121  3 3566677899999999998863              2222111000 0 00000    0


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc-cceeEEEEcC--CCCEEEE
Q 004290          220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS-LHLTHVTFSP--NGEEVLL  296 (763)
Q Consensus       220 ~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~i~~v~~sp--dg~~l~~  296 (763)
                      +..+.   +..++.+..++.+..+|+++++.+........               .+... ..+..+.-+|  .+..+++
T Consensus       185 sp~~~---~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~---------------~g~~~~~~~~~~~~~p~~~~~~vy~  246 (377)
T TIGR03300       185 SPVIA---DGGVLVGFAGGKLVALDLQTGQPLWEQRVALP---------------KGRTELERLVDVDGDPVVDGGQVYA  246 (377)
T ss_pred             CCEEE---CCEEEEECCCCEEEEEEccCCCEeeeeccccC---------------CCCCchhhhhccCCccEEECCEEEE
Confidence            11111   13678888899999999998875433211000               00000 0000000011  2457888


Q ss_pred             EeCCCeEEEEECCCCC
Q 004290          297 SYSGEHVYLMDVNHAG  312 (763)
Q Consensus       297 ~s~d~~i~iwd~~~~~  312 (763)
                      ++.++.++.||..+++
T Consensus       247 ~~~~g~l~a~d~~tG~  262 (377)
T TIGR03300       247 VSYQGRVAALDLRSGR  262 (377)
T ss_pred             EEcCCEEEEEECCCCc
Confidence            8889999999988753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.57  E-value=2.5e-05  Score=80.38  Aligned_cols=246  Identities=12%  Similarity=0.110  Sum_probs=136.3

Q ss_pred             cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEccCC-----
Q 004290           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD----------DTHINVWSYSSRKLLHSIETGH-----   92 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~----------D~~v~iWd~~~~~~~~~~~~~h-----   92 (763)
                      .++.+-+  ..+.+.+..+..-..+- .+ ++|||+.|..+..          +..|.+||..+.+.+..+..+-     
T Consensus        27 ~~v~ViD--~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~  102 (352)
T TIGR02658        27 TQVYTID--GEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL  102 (352)
T ss_pred             ceEEEEE--CCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence            3444444  44556666665333222 24 9999998876654          7899999999999998884321     


Q ss_pred             -CCceEEEEEeeCCCCcEEEEEe-C-CCcEEEEECCCCCCCCCCCCCCCCceeeec------------------------
Q 004290           93 -SANVFCTKFVPETSDELVVSGA-G-DAEVRLFNLSRFSGRGLDDNAITPSALYQC------------------------  145 (763)
Q Consensus        93 -~~~V~~v~~~p~~~~~~l~s~s-~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~------------------------  145 (763)
                       ......++++|+  |++|+... . +..|-+.|+.+++-..... ...+...+..                        
T Consensus       103 ~~~~~~~~~ls~d--gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~-vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~  179 (352)
T TIGR02658       103 VGTYPWMTSLTPD--NKTLLFYQFSPSPAVGVVDLEGKAFVRMMD-VPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN  179 (352)
T ss_pred             ccCccceEEECCC--CCEEEEecCCCCCEEEEEECCCCcEEEEEe-CCCCcEEEEecCCccEEEeecCceEEEEecCCCc
Confidence             122347899999  78888766 3 6889999998643111000 0000000000                        


Q ss_pred             ---ccCceeEE---------EEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCC
Q 004290          146 ---HTRRVKKL---------AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK  213 (763)
Q Consensus       146 ---h~~~v~~l---------~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (763)
                         ....+..-         .|.+.++.+++...+ |+|.+.|+.......          ...+.+-......-.   -
T Consensus       180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~----------~~~~~~~~~~~~~~~---w  245 (352)
T TIGR02658       180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF----------LPAIEAFTEAEKADG---W  245 (352)
T ss_pred             eEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee----------cceeeeccccccccc---c
Confidence               00000000         223323344444433 777777755433110          000000000000000   0


Q ss_pred             CccceEEEEEeCCCCcEEEEEe----------CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290          214 QTLSLKSCDISSTRPHLLLVGG----------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (763)
Q Consensus       214 ~~~~v~~i~~~p~~~~~l~sgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  283 (763)
                      ....+.-++++|++ +.+++..          ..+.|.++|..+++.+..+..                   |+   .+.
T Consensus       246 rP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-------------------G~---~~~  302 (352)
T TIGR02658       246 RPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-------------------GH---EID  302 (352)
T ss_pred             CCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-------------------CC---cee
Confidence            11222338999984 5555532          225799999998876544321                   11   488


Q ss_pred             EEEEcCCCC-EEEEEe-CCCeEEEEECCCCCccceE
Q 004290          284 HVTFSPNGE-EVLLSY-SGEHVYLMDVNHAGGRAMR  317 (763)
Q Consensus       284 ~v~~spdg~-~l~~~s-~d~~i~iwd~~~~~~~~~~  317 (763)
                      .++++||++ +|++.. .++.|.++|..+++.....
T Consensus       303 ~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       303 SINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             eEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            999999999 888776 4889999999997644433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.55  E-value=0.0001  Score=73.03  Aligned_cols=252  Identities=12%  Similarity=0.091  Sum_probs=157.6

Q ss_pred             cccCceEEEEeCCCCCEEEEEeC---CCcEEEEeCCC--CeEEE--EEccCCCCceEEEEEeeCCCCcEEEEEeC-CCcE
Q 004290           48 GHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSS--RKLLH--SIETGHSANVFCTKFVPETSDELVVSGAG-DAEV  119 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~---D~~v~iWd~~~--~~~~~--~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-dg~I  119 (763)
                      .+.+.++-|+|+|+++.|.++..   +|.|-.|.++.  |+...  .. ..-..+.+.++++++  +++++++.. .|.|
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g~~p~yvsvd~~--g~~vf~AnY~~g~v  113 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLPGSPPCYVSVDED--GRFVFVANYHSGSV  113 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccCCCCCeEEEECCC--CCEEEEEEccCceE
Confidence            46778899999999999988855   47777776664  54322  22 122334488999999  788888876 6889


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCc----------eeEEEEecCCCCEEEEEeC-CCcEEEEECCCCCCCCCCCC
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRR----------VKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGS  188 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~sp~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~  188 (763)
                      .++-++.. +..     ..++.. ..|.+.          +....+.| +++++++..- --.|.+|++..++...... 
T Consensus       114 ~v~p~~~d-G~l-----~~~v~~-~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~-  184 (346)
T COG2706         114 SVYPLQAD-GSL-----QPVVQV-VKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADP-  184 (346)
T ss_pred             EEEEcccC-Ccc-----ccceee-eecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccc-
Confidence            99999763 222     122232 335555          88999999 5567666542 3469999999776431110 


Q ss_pred             CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEE-EeCCCcEEEEeCCCC-CCCcccCCCCCCCCcccc
Q 004290          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNY  266 (763)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~s-gs~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~  266 (763)
                                         .. . ........|.|+|+ +++..+ .--+++|-+|..... ..+..++....       
T Consensus       185 -------------------~~-v-~~G~GPRHi~FHpn-~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t-------  235 (346)
T COG2706         185 -------------------AE-V-KPGAGPRHIVFHPN-GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDT-------  235 (346)
T ss_pred             -------------------cc-c-CCCCCcceEEEcCC-CcEEEEEeccCCEEEEEEEcCCCceEEEeeeecc-------
Confidence                               00 0 11234578999997 555544 456899999998864 22222111100       


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCCccceE----eecCCCCeeeeeccCCCCcccCCC
Q 004290          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMR----YTVGDASKIMSFTPTLNGLELQPP  341 (763)
Q Consensus       267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~  341 (763)
                           +...-....+...|.++|||++|.++.. ...|-+|.+.........    ...+..++.+.++|...-+....+
T Consensus       236 -----lP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         236 -----LPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             -----CccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence                 0111112225788999999999998876 568999988764322221    223445778888887766655555


Q ss_pred             CCcc
Q 004290          342 IHDF  345 (763)
Q Consensus       342 ~~~~  345 (763)
                      .++.
T Consensus       311 ~sd~  314 (346)
T COG2706         311 KSDN  314 (346)
T ss_pred             CCCc
Confidence            4443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.54  E-value=0.00015  Score=71.93  Aligned_cols=201  Identities=16%  Similarity=0.168  Sum_probs=120.9

Q ss_pred             CCcEEEEeCCCC--eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---CcEEEEECCCCCCCCCCCCCCCCceeeec
Q 004290           71 DTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQC  145 (763)
Q Consensus        71 D~~v~iWd~~~~--~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~  145 (763)
                      ++-|.+|++.+.  +........+.+.++-|+|+|+  .+.|.++..+   |.|-.|.+...++..      ..+.....
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~--~~~LY~v~~~~~~ggvaay~iD~~~G~L------t~ln~~~~   86 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD--QRHLYVVNEPGEEGGVAAYRIDPDDGRL------TFLNRQTL   86 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCC--CCEEEEEEecCCcCcEEEEEEcCCCCeE------EEeecccc
Confidence            567999998742  2221111367788999999999  6788887654   778888777533322      11222222


Q ss_pred             ccCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEe
Q 004290          146 HTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS  224 (763)
Q Consensus       146 h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  224 (763)
                      -..+.+.+++++ ++++++++. .-|.|.++-++..-.+...       ...+.....+..     .+....-+-...|.
T Consensus        87 ~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~-------v~~~~h~g~~p~-----~rQ~~~h~H~a~~t  153 (346)
T COG2706          87 PGSPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPV-------VQVVKHTGSGPH-----ERQESPHVHSANFT  153 (346)
T ss_pred             CCCCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccc-------eeeeecCCCCCC-----ccccCCccceeeeC
Confidence            233448899999 556666665 4688999988764222100       001111111100     00111226678899


Q ss_pred             CCCCcEEEEEeC-CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCe
Q 004290          225 STRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEH  302 (763)
Q Consensus       225 p~~~~~l~sgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~  302 (763)
                      |+ +++|++... --.|.+|++..+....              ..+..+.    .+..-+.|+|+|++++..+... +++
T Consensus       154 P~-~~~l~v~DLG~Dri~~y~~~dg~L~~--------------~~~~~v~----~G~GPRHi~FHpn~k~aY~v~EL~st  214 (346)
T COG2706         154 PD-GRYLVVPDLGTDRIFLYDLDDGKLTP--------------ADPAEVK----PGAGPRHIVFHPNGKYAYLVNELNST  214 (346)
T ss_pred             CC-CCEEEEeecCCceEEEEEcccCcccc--------------ccccccC----CCCCcceEEEcCCCcEEEEEeccCCE
Confidence            98 567776653 3579999999664321              1111111    1113567999999999998887 999


Q ss_pred             EEEEECCCC
Q 004290          303 VYLMDVNHA  311 (763)
Q Consensus       303 i~iwd~~~~  311 (763)
                      |.+|..+..
T Consensus       215 V~v~~y~~~  223 (346)
T COG2706         215 VDVLEYNPA  223 (346)
T ss_pred             EEEEEEcCC
Confidence            999999884

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.54  E-value=4e-05  Score=82.31  Aligned_cols=191  Identities=14%  Similarity=0.137  Sum_probs=108.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (763)
Q Consensus        61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (763)
                      ++..++.++.++.|..+|..+|+.+.....  ...+.+.-...   +..++.++.++.|..||..+++.          +
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~p~v~---~~~v~v~~~~g~l~a~d~~tG~~----------~  168 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL--SSEVLSPPLVA---NGLVVVRTNDGRLTALDAATGER----------L  168 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeecc--CceeecCCEEE---CCEEEEECCCCeEEEEEcCCCce----------e
Confidence            466788888999999999999998876622  22232211112   35677778899999999987532          2


Q ss_pred             eeeecccCce-----eEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCc
Q 004290          141 ALYQCHTRRV-----KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT  215 (763)
Q Consensus       141 ~~~~~h~~~v-----~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (763)
                      ..+......+     .+....  + ..++.+..++.+..+|+++++..              |............. ...
T Consensus       169 W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~--------------W~~~~~~~~g~~~~-~~~  230 (377)
T TIGR03300       169 WTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPL--------------WEQRVALPKGRTEL-ERL  230 (377)
T ss_pred             eEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEe--------------eeeccccCCCCCch-hhh
Confidence            2222111110     111222  2 35667888899999999887632              21110000000000 000


Q ss_pred             cceE-EEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEE
Q 004290          216 LSLK-SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV  294 (763)
Q Consensus       216 ~~v~-~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l  294 (763)
                      ..+. +..+.   +..+++++.++.++.||+.+++.+....                     ..  ......  .++..|
T Consensus       231 ~~~~~~p~~~---~~~vy~~~~~g~l~a~d~~tG~~~W~~~---------------------~~--~~~~p~--~~~~~v  282 (377)
T TIGR03300       231 VDVDGDPVVD---GGQVYAVSYQGRVAALDLRSGRVLWKRD---------------------AS--SYQGPA--VDDNRL  282 (377)
T ss_pred             hccCCccEEE---CCEEEEEEcCCEEEEEECCCCcEEEeec---------------------cC--CccCce--EeCCEE
Confidence            0000 11111   3478888899999999999886443221                     00  011111  245678


Q ss_pred             EEEeCCCeEEEEECCCCC
Q 004290          295 LLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       295 ~~~s~d~~i~iwd~~~~~  312 (763)
                      ++++.||.|+.+|..+++
T Consensus       283 yv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       283 YVTDADGVVVALDRRSGS  300 (377)
T ss_pred             EEECCCCeEEEEECCCCc
Confidence            888899999999998753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.52  E-value=1.6e-06  Score=82.91  Aligned_cols=195  Identities=14%  Similarity=0.175  Sum_probs=113.8

Q ss_pred             CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeeccc------------CceeEEEEecC-
Q 004290           92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT------------RRVKKLAVEVG-  158 (763)
Q Consensus        92 h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~sp~-  158 (763)
                      ....|+++.|...  |.+|++|...|.|.+|.-....+..     .+....|.+|.            ..|..+.|..+ 
T Consensus        25 ead~ItaVefd~t--g~YlatGDkgGRVvlfer~~s~~ce-----ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t   97 (460)
T COG5170          25 EADKITAVEFDET--GLYLATGDKGGRVVLFEREKSYGCE-----YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT   97 (460)
T ss_pred             ccceeeEEEeccc--cceEeecCCCceEEEeecccccccc-----hhhhhhhcccccchhhhhhccHHHHhhheeeecCC
Confidence            4467899999988  8999999999999999877543211     12233344443            35778877643 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCC-----------CCCCc-ccceEEEecCCCceeec------cCCCCCccceEE
Q 004290          159 NPHVVWSASEDGTLRQHDFRQGSSCPPA-----------GSSHQ-ECRNILLDLRCGAKRSL------ADPPKQTLSLKS  220 (763)
Q Consensus       159 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~  220 (763)
                      +...|+..+.|++|++|-+.........           ..+.. .....+..--..+...+      .....|..-|++
T Consensus        98 ~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS  177 (460)
T COG5170          98 GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS  177 (460)
T ss_pred             CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence            3345667778999999999876321000           00000 00000000000000000      112457788999


Q ss_pred             EEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC--CCccceeEEEEcCCC-CEEEEE
Q 004290          221 CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG--RSSLHLTHVTFSPNG-EEVLLS  297 (763)
Q Consensus       221 i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~i~~v~~spdg-~~l~~~  297 (763)
                      +.|+.+. ..++ ...|=.|.+|++........+               ..+.++.  .-...|++..|+|.. ..+..+
T Consensus       178 iS~NsD~-et~l-SaDdLrINLWnl~i~D~sFnI---------------VDiKP~nmeeLteVItSaeFhp~~cn~fmYS  240 (460)
T COG5170         178 ISFNSDK-ETLL-SADDLRINLWNLEIIDGSFNI---------------VDIKPHNMEELTEVITSAEFHPEMCNVFMYS  240 (460)
T ss_pred             eeecCch-heee-eccceeeeeccccccCCceEE---------------EeccCccHHHHHHHHhhcccCHhHcceEEEe
Confidence            9999973 4444 556788999998753311111               1111100  001148899999964 445567


Q ss_pred             eCCCeEEEEECCC
Q 004290          298 YSGEHVYLMDVNH  310 (763)
Q Consensus       298 s~d~~i~iwd~~~  310 (763)
                      +..|.|++-|++.
T Consensus       241 sSkG~Ikl~DlRq  253 (460)
T COG5170         241 SSKGEIKLNDLRQ  253 (460)
T ss_pred             cCCCcEEehhhhh
Confidence            7799999999886

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.52  E-value=8.4e-07  Score=82.96  Aligned_cols=165  Identities=22%  Similarity=0.254  Sum_probs=104.5

Q ss_pred             CCCEEEEEeC-----CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004290           61 KGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  135 (763)
Q Consensus        61 ~g~~Lasgs~-----D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~  135 (763)
                      .+++|.++..     -+..++|+++..+.+..- ..-...|.+++-+|.. .+++++|+.||.+-+||.+...       
T Consensus       143 ~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~-~~~~~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~-------  213 (319)
T KOG4714|consen  143 HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS-KKALDAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNVA-------  213 (319)
T ss_pred             cccEEecCCcceEeeccceeeeccccccccccc-ccccccchhhhCCccc-ccEEEEecCCCeEEEEEccccc-------
Confidence            4555554422     235667777654332221 1122349999999986 7889999999999999999742       


Q ss_pred             CCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee----ccCC
Q 004290          136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS----LADP  211 (763)
Q Consensus       136 ~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  211 (763)
                        .+...++.|+.+|..+.|+|.++..|+++++||.+..||..+.-..  .  .........| +.....+.    -...
T Consensus       214 --~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~--i--~~~~s~~s~W-LsgD~v~s~i~i~~ll  286 (319)
T KOG4714|consen  214 --MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS--I--SNQASVISSW-LSGDPVKSRIEITSLL  286 (319)
T ss_pred             --chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE--e--cCcccccccc-ccCCcccceEeeeccc
Confidence              4577788999999999999999999999999999999998752211  0  0000000011 00000110    0111


Q ss_pred             CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEe
Q 004290          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD  244 (763)
Q Consensus       212 ~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd  244 (763)
                      +.....|+++...   +..|++|+.-+.|++++
T Consensus       287 ~~~~~SinsfDV~---g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  287 PSRSLSINSFDVL---GPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             cccceeeeeeecc---CceEEeccccceEEEec
Confidence            2233445555554   45899999999998875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.48  E-value=3.1e-05  Score=74.34  Aligned_cols=196  Identities=13%  Similarity=0.108  Sum_probs=116.3

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCC------CCceEEEEEeeCCC----CcEEEEEeCCCcEEE
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH------SANVFCTKFVPETS----DELVVSGAGDAEVRL  121 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h------~~~V~~v~~~p~~~----~~~l~s~s~dg~I~i  121 (763)
                      .=+-++||||+.+||.+...|+|+++|+.. ..+..+...+      ...|..+.|.+...    ...|+.-..+|.++-
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            346799999999999999999999999975 3344443222      35677787876420    124666677888888


Q ss_pred             EECCCCCCCCCCCCCCCCceee--e-cccCceeEEEEecCCCCEEEEEe-CCC----------cEEEEECCCCCCCCCCC
Q 004290          122 FNLSRFSGRGLDDNAITPSALY--Q-CHTRRVKKLAVEVGNPHVVWSAS-EDG----------TLRQHDFRQGSSCPPAG  187 (763)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~--~-~h~~~v~~l~~sp~~~~~l~s~s-~dg----------~i~iwd~~~~~~~~~~~  187 (763)
                      |-+..+..+.     ......+  . .+...|.++.++|.. ++|+.|| ...          -+..|-+-...+--...
T Consensus       124 y~vs~gt~q~-----y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v  197 (282)
T PF15492_consen  124 YLVSVGTNQG-----YQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQV  197 (282)
T ss_pred             EEEEcccCCc-----ceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEc
Confidence            8764321111     1112222  2 246789999999954 5555554 322          24456554443221100


Q ss_pred             CCCccc------ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCC
Q 004290          188 SSHQEC------RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  257 (763)
Q Consensus       188 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~  257 (763)
                      ....+.      ...++.+.  ..+...........|..+..+|+ +..||+...+|.|.+|++.+..........
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~--~~~~fs~~~~~~d~i~kmSlSPd-g~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  198 TSSEDDITASSKRRGLLRIP--SFKFFSRQGQEQDGIFKMSLSPD-GSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             cccCccccccccccceeecc--ceeeeeccccCCCceEEEEECCC-CCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            000000      00111111  00011111234567999999997 789999999999999999988766655443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.47  E-value=1.3e-05  Score=75.55  Aligned_cols=199  Identities=13%  Similarity=0.026  Sum_probs=133.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEccCCCC--ceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004290           64 LLISGSDDTHINVWSYSSRKLLHSIETGHSA--NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (763)
Q Consensus        64 ~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~--~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  141 (763)
                      -+..++.|.++++.+++.+......   |..  .++++.++++  +.++++.+....|..|.+.......        +.
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~--------~~  196 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAV---HNQNLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYI--------EN  196 (344)
T ss_pred             ceeeccCCcceeEEEEecCccccee---eccccceeeeEEcCC--CceEEEecCCCcceEEEeCCcccee--------ee
Confidence            3567788889999888755332222   333  3889999999  7999999999999999998643221        22


Q ss_pred             -eeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEE
Q 004290          142 -LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS  220 (763)
Q Consensus       142 -~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (763)
                       ....-.+.=.+..|+. ....||++..||++.|||+|....+..                    ..-...+.|.+.+..
T Consensus       197 ~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~--------------------~~sstrp~hnGa~R~  255 (344)
T KOG4532|consen  197 IYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMA--------------------EISSTRPHHNGAFRV  255 (344)
T ss_pred             eEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchh--------------------hhcccCCCCCCceEE
Confidence             2233445557788987 558999999999999999998653210                    112233568899999


Q ss_pred             EEEeCCCC-cEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 004290          221 CDISSTRP-HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  299 (763)
Q Consensus       221 i~~~p~~~-~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~  299 (763)
                      +.|++.+. .+|+..-.-+.+.+.|+|++.....+..            +. -....|....|..-.|+.++.-+.+.+.
T Consensus       256 c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i------------~~-d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  256 CRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI------------PD-DVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             EEecCCCcceEEEEecCcceEEEEEcccCceeeEEec------------Cc-cccccccccccccccccCCCcccccccc
Confidence            99997543 3455555568899999999875432211            00 0112233335888889888877776665


Q ss_pred             CCeEEEEECCC
Q 004290          300 GEHVYLMDVNH  310 (763)
Q Consensus       300 d~~i~iwd~~~  310 (763)
                      + .+.-|++.+
T Consensus       323 ~-~~ae~ni~s  332 (344)
T KOG4532|consen  323 L-QGAEYNILS  332 (344)
T ss_pred             h-hhheeeccc
Confidence            5 345566655

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.47  E-value=5.4e-07  Score=87.52  Aligned_cols=157  Identities=14%  Similarity=0.143  Sum_probs=111.4

Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeec
Q 004290           66 ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC  145 (763)
Q Consensus        66 asgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  145 (763)
                      ++.+.+..|-+-|+++|... .|  ...+.|+++.|...  ++++..|..+|.|...|++.....     ...+...+. 
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf--~sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~rnqG-----~~~~a~rly-  296 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SF--QSKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCRNQG-----NGWCAQRLY-  296 (425)
T ss_pred             ecccccceeEEEEeeccccc-cc--ccchhHHHHHhccc--CCeeEecccCCcEEEEEeeecccC-----CCcceEEEE-
Confidence            55666778899999887543 33  35678999999987  699999999999999999975211     123455554 


Q ss_pred             ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccce--EEEEE
Q 004290          146 HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL--KSCDI  223 (763)
Q Consensus       146 h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~  223 (763)
                      |...|++|..-..++.+|++.+.+|+|++||+|.-+...                      .+....+|...-  .-+..
T Consensus       297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~----------------------~V~qYeGHvN~~a~l~~~v  354 (425)
T KOG2695|consen  297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK----------------------SVMQYEGHVNLSAYLPAHV  354 (425)
T ss_pred             cCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc----------------------ceeeeeccccccccccccc
Confidence            899999998766466788888999999999999876321                      111111221111  11223


Q ss_pred             eCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCC
Q 004290          224 SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (763)
Q Consensus       224 ~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~  256 (763)
                      ++.+ ..+++++.|...|||.++.++.+.+++.
T Consensus       355 ~~ee-g~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  355 KEEE-GSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             cccc-ceEEEccCeeEEEEEecccCceeeccCC
Confidence            4543 4777899999999999999988776643

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=6.5e-07  Score=91.76  Aligned_cols=182  Identities=15%  Similarity=0.209  Sum_probs=121.4

Q ss_pred             EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEE
Q 004290           85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW  164 (763)
Q Consensus        85 ~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~  164 (763)
                      +..+ .||...|..++-..+  .+-+++++.|++|++|.++....   ......+..++..|+.+|.++.|-. +-++++
T Consensus       728 L~nf-~GH~~~iRai~AidN--ENSFiSASkDKTVKLWSik~EgD---~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~  800 (1034)
T KOG4190|consen  728 LCNF-TGHQEKIRAIAAIDN--ENSFISASKDKTVKLWSIKPEGD---EIGTSACQFTYQAHKKPIHDIGFLA-DLRSIA  800 (1034)
T ss_pred             eecc-cCcHHHhHHHHhccc--ccceeeccCCceEEEEEeccccC---ccccceeeeEhhhccCcccceeeee-ccceee
Confidence            4455 799999988876666  68899999999999999985221   1122346778899999999999987 445664


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEe
Q 004290          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD  244 (763)
Q Consensus       165 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd  244 (763)
                        +.||.|.+||.--+....+          ..+..+.          +..+.|.++.-- +..-+++-++...+|+++|
T Consensus       801 --ScD~giHlWDPFigr~Laq----------~~dapk~----------~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~D  857 (1034)
T KOG4190|consen  801 --SCDGGIHLWDPFIGRLLAQ----------MEDAPKE----------GAGGNIKCLENV-DRHILIAGCSAESTVKLFD  857 (1034)
T ss_pred             --eccCcceeecccccchhHh----------hhcCccc----------CCCceeEecccC-cchheeeeccchhhheeee
Confidence              4589999999766553311          1111111          112233333221 2233444447889999999


Q ss_pred             CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      .|...-...+.           .+..    .+. +..+.+++..|.|++++++-..|+|.+.|.++++
T Consensus       858 aRsce~~~E~k-----------Vcna----~~P-na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  858 ARSCEWTCELK-----------VCNA----PGP-NALTRAIAVADKGNKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             cccccceeeEE-----------eccC----CCC-chheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence            99865332221           1100    112 2248899999999999999999999999999975

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.44  E-value=9.9e-05  Score=79.40  Aligned_cols=193  Identities=9%  Similarity=0.070  Sum_probs=112.6

Q ss_pred             ceEEEEeCCCCCE-EEEEeC---CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEE-EEEeCC--CcEEEEEC
Q 004290           52 CVNAISWNSKGSL-LISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD--AEVRLFNL  124 (763)
Q Consensus        52 ~V~~l~fsp~g~~-Lasgs~---D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l-~s~s~d--g~I~iwd~  124 (763)
                      .+..-.|+|||+. ++..+.   +..|.++|+.+++.....  ...+.+....|+|+  |+.| ++.+.+  ..|.++|+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPD--G~~la~~~~~~g~~~Iy~~dl  264 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKD--GSKLLLTMAPKGQPDIYLYDT  264 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCC--CCEEEEEEccCCCcEEEEEEC
Confidence            6778999999984 664443   356889999888755443  24455677889999  5544 455444  45777777


Q ss_pred             CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (763)
                      ..+.           ...+..+........|+|++..++++....+  .|++.|+.+++.                    
T Consensus       265 ~~g~-----------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--------------------  313 (419)
T PRK04043        265 NTKT-----------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--------------------  313 (419)
T ss_pred             CCCc-----------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--------------------
Confidence            6532           2333333333345689996655555554444  466677766542                    


Q ss_pred             CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---------CcEEEEeCCCCCCCcccCCCCCCCCccccccccccc
Q 004290          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (763)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (763)
                         ..+... +.    ....|+|+ ++.|+..+..         ..|.+.|+.++... .+                  .
T Consensus       314 ---~rlt~~-g~----~~~~~SPD-G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~L------------------T  365 (419)
T PRK04043        314 ---EQVVFH-GK----NNSSVSTY-KNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RL------------------T  365 (419)
T ss_pred             ---EeCccC-CC----cCceECCC-CCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-EC------------------C
Confidence               111111 11    11379998 5555555433         25777787765421 00                  0


Q ss_pred             CCCCCccceeEEEEcCCCCEEEEEeCC---CeEEEEECCCC
Q 004290          274 EHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA  311 (763)
Q Consensus       274 ~~g~~~~~i~~v~~spdg~~l~~~s~d---~~i~iwd~~~~  311 (763)
                      ..+    ......|+|||+.|+..+.+   ..+.+.++...
T Consensus       366 ~~~----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        366 ANG----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CCC----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            001    12247899999988876652   24667777653

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.40  E-value=4.1e-05  Score=77.74  Aligned_cols=120  Identities=13%  Similarity=0.176  Sum_probs=96.4

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCC-cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDDT-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D~-~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~  126 (763)
                      +|.+.|.-..+..+++-++.|..|| .+-|+|..+++..+ + .+.-+.|.++..+|+  |++++.+.....|.+.|+.+
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~-e~~lg~I~av~vs~d--GK~~vvaNdr~el~vididn  432 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-I-EKDLGNIEAVKVSPD--GKKVVVANDRFELWVIDIDN  432 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-e-eCCccceEEEEEcCC--CcEEEEEcCceEEEEEEecC
Confidence            6888899999999999999999999 89999999887544 3 356689999999999  89999999888999999998


Q ss_pred             CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC----CcEEEEECCCCCC
Q 004290          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----GTLRQHDFRQGSS  182 (763)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d----g~i~iwd~~~~~~  182 (763)
                      +..          ...-+...+-|+..+|+| ++++|+-+--+    ..|+++|+..++.
T Consensus       433 gnv----------~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         433 GNV----------RLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             CCe----------eEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE
Confidence            542          222234567799999999 66888766544    4789999988653

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.32  E-value=1.4e-05  Score=87.39  Aligned_cols=186  Identities=15%  Similarity=0.170  Sum_probs=133.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (763)
Q Consensus        61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (763)
                      ++..++-|+-...+..+|+.+.+..+.. .-..+.|+-++.+    ++.+.+|...|+|.+-|.++          .+.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s----------~~~i  210 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRYN----NRNLFCGDTRGTVFLRDPNS----------FETI  210 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeee-eccCCceEEEEec----CcEEEeecccceEEeecCCc----------Ccee
Confidence            3456777777778889999988877665 2233346655544    68999999999999999987          4668


Q ss_pred             eeeecccCceeEEEEecCCCCEEEEEeC---------CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCC
Q 004290          141 ALYQCHTRRVKKLAVEVGNPHVVWSASE---------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (763)
Q Consensus       141 ~~~~~h~~~v~~l~~sp~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (763)
                      +++.+|.+.|.++..   .+++|+|||.         |.-|+|||+|..+.+..+...                      
T Consensus       211 ht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~----------------------  265 (1118)
T KOG1275|consen  211 HTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP----------------------  265 (1118)
T ss_pred             eeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc----------------------
Confidence            999999999998877   4578888874         567899999987754222111                      


Q ss_pred             CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC
Q 004290          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (763)
Q Consensus       212 ~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg  291 (763)
                          ....-+.|.|.-...+++.+..|...+-|..+...-         +.-+..+     .   ..+..+.++++|++|
T Consensus       266 ----~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP---------~~~~~~v-----~---p~~s~i~~fDiSsn~  324 (1118)
T KOG1275|consen  266 ----YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP---------PAGVKMV-----N---PNGSGISAFDISSNG  324 (1118)
T ss_pred             ----cCchhhhhcccccceEEEEecccceeeccccccCCC---------ccceeEE-----c---cCCCcceeEEecCCC
Confidence                111345678876788999999999999985443210         0001111     0   111139999999999


Q ss_pred             CEEEEEeCCCeEEEEE
Q 004290          292 EEVLLSYSGEHVYLMD  307 (763)
Q Consensus       292 ~~l~~~s~d~~i~iwd  307 (763)
                      ..++.+..+|.|.+|.
T Consensus       325 ~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  325 DALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ceEEEecccCcEeeec
Confidence            9999999999999997

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.30  E-value=3.1e-06  Score=84.34  Aligned_cols=99  Identities=20%  Similarity=0.266  Sum_probs=76.8

Q ss_pred             eCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce-eeeccc
Q 004290           69 SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA-LYQCHT  147 (763)
Q Consensus        69 s~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~h~  147 (763)
                      ++.+.+.+|....+.+...  -||-+.++.++|+||  +++|+++..|..|++-......          .+. -..||+
T Consensus       129 gD~~~~di~s~~~~~~~~~--lGhvSml~dVavS~D--~~~IitaDRDEkIRvs~ypa~f----------~IesfclGH~  194 (390)
T KOG3914|consen  129 GDVYSFDILSADSGRCEPI--LGHVSMLLDVAVSPD--DQFIITADRDEKIRVSRYPATF----------VIESFCLGHK  194 (390)
T ss_pred             CCceeeeeecccccCcchh--hhhhhhhheeeecCC--CCEEEEecCCceEEEEecCccc----------chhhhccccH
Confidence            4445555666555444433  389999999999999  7999999999999997776421          122 235799


Q ss_pred             CceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290          148 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (763)
Q Consensus       148 ~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~  183 (763)
                      ..|..|+.-+ + ..|+++|.|++|++||+++++.+
T Consensus       195 eFVS~isl~~-~-~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  195 EFVSTISLTD-N-YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             hheeeeeecc-C-ceeeecCCCCcEEEEecccCCcc
Confidence            9999999987 3 56889999999999999999865

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.25  E-value=6.5e-05  Score=80.84  Aligned_cols=246  Identities=18%  Similarity=0.197  Sum_probs=163.0

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC----------CCcEEEEEeCCCcE
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET----------SDELVVSGAGDAEV  119 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~----------~~~~l~s~s~dg~I  119 (763)
                      ...-.++.|+|.| +||-|+. ..|.+-|..+-+.+..+ ..|...|+.+.|.|..          ..-+|+++...|.|
T Consensus        15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsi-e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhcc-ccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            3346789999877 6777776 47899999999999998 7899999999999852          12367888889999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC---CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  196 (763)
                      .+||+....          .+..+..|.+++..+.|-|.   ...+++.-....+|.+|+..+++              .
T Consensus        92 il~d~~~~s----------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~--------------k  147 (1062)
T KOG1912|consen   92 ILVDFVLAS----------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE--------------K  147 (1062)
T ss_pred             EEEEehhhh----------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc--------------e
Confidence            999998743          24556778899999999762   22567777777899999999886              3


Q ss_pred             EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccc----ccc
Q 004290          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP----MHL  272 (763)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  272 (763)
                      +|....           ......|+.++|-+...|..-+..|.+-+-+.-....-..      |...++...+    .|+
T Consensus       148 ~Wk~~y-----------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~------pgk~~qI~sd~Sdl~~l  210 (1062)
T KOG1912|consen  148 FWKYDY-----------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV------PGKEFQITSDHSDLAHL  210 (1062)
T ss_pred             eecccc-----------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC------CceeEEEecCccchhhh
Confidence            343332           2345677888998788888888888887776543221100      0000000000    000


Q ss_pred             cC-----CCCCc-----c---ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCCCcccC
Q 004290          273 SE-----HGRSS-----L---HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (763)
Q Consensus       273 ~~-----~g~~~-----~---~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  339 (763)
                      +.     ..+..     .   ..-.++|+|.-+.++-..--..+.++|+.-........-.......+.+-|+.+...+.
T Consensus       211 ere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lf  290 (1062)
T KOG1912|consen  211 ERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALF  290 (1062)
T ss_pred             hhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEE
Confidence            00     00000     0   12235788877777777778889999998865555555555556667777766555443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=5.3e-05  Score=75.62  Aligned_cols=86  Identities=12%  Similarity=0.234  Sum_probs=74.4

Q ss_pred             ccceeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           41 SQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      +....+.+|...|..++|||..+ +|..++-+.+|+|.|+++..++..+ ..+ ..+++++|.-+. .++|..|-..|.|
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~-~~~wSC~wDlde-~h~IYaGl~nG~V  260 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY-NQIWSCCWDLDE-RHVIYAGLQNGMV  260 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc-CCceeeeeccCC-cceeEEeccCceE
Confidence            33446778899999999999776 8889999999999999999888887 455 789999999986 7889999999999


Q ss_pred             EEEECCCCCC
Q 004290          120 RLFNLSRFSG  129 (763)
Q Consensus       120 ~iwd~~~~~~  129 (763)
                      .|||++...+
T Consensus       261 lvyD~R~~~~  270 (463)
T KOG1645|consen  261 LVYDMRQPEG  270 (463)
T ss_pred             EEEEccCCCc
Confidence            9999997653

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.22  E-value=0.00013  Score=74.32  Aligned_cols=149  Identities=13%  Similarity=0.105  Sum_probs=116.0

Q ss_pred             eCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC-cEEEEECCCCCCCCCCCC
Q 004290           58 WNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-EVRLFNLSRFSGRGLDDN  135 (763)
Q Consensus        58 fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg-~I~iwd~~~~~~~~~~~~  135 (763)
                      |++ +|.++|..|. |++.|.+...+-.++   .+|.+.|.-..+.-+  +.-++.|..|| .+-|+|...+.       
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~--~e~~vigt~dgD~l~iyd~~~~e-------  393 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVD--PEGDVIGTNDGDKLGIYDKDGGE-------  393 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEE---cCCCCceEEEEEccC--CcceEEeccCCceEEEEecCCce-------
Confidence            443 7899999887 788888876665543   478888999888888  56888999999 89999999743       


Q ss_pred             CCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCc
Q 004290          136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT  215 (763)
Q Consensus       136 ~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (763)
                          ...+...-+.|.+|..+| ++.+++.+.....|.+.|+.++...             +++            ....
T Consensus       394 ----~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~-------------~id------------kS~~  443 (668)
T COG4946         394 ----VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVR-------------LID------------KSEY  443 (668)
T ss_pred             ----EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCee-------------Eec------------cccc
Confidence                566677788999999999 6688888888888999999988621             221            1234


Q ss_pred             cceEEEEEeCCCCcEEEEEeCCC----cEEEEeCCCCCC
Q 004290          216 LSLKSCDISSTRPHLLLVGGSDA----FARLYDRRMLPP  250 (763)
Q Consensus       216 ~~v~~i~~~p~~~~~l~sgs~Dg----~i~iwd~~~~~~  250 (763)
                      .-|+.++|+|+ +.+||-+--+|    .|++||+..++.
T Consensus       444 ~lItdf~~~~n-sr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         444 GLITDFDWHPN-SRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             ceeEEEEEcCC-ceeEEEecCcceeeeeEEEEecCCCeE
Confidence            56899999997 78999887765    589999998653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.20  E-value=4e-06  Score=81.67  Aligned_cols=162  Identities=15%  Similarity=0.138  Sum_probs=108.5

Q ss_pred             EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004290           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (763)
Q Consensus        99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~  178 (763)
                      ++|+-+..+.. ++.+.+-.|-+-|+.++-           .+.|. -++.|.++.|.. .+.++..|+..|.|..+|+|
T Consensus       217 CawSlni~gyh-fs~G~sqqv~L~nvetg~-----------~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR  282 (425)
T KOG2695|consen  217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGH-----------QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLR  282 (425)
T ss_pred             hhhhhccceee-ecccccceeEEEEeeccc-----------ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEee
Confidence            46664432333 566667888888988743           23343 567788999987 45788899999999999999


Q ss_pred             CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCC
Q 004290          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM  258 (763)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~  258 (763)
                      ...      .+...+...++               |...|+++..-.....+|++.+.+|+|++||.|.-+.-..     
T Consensus       283 ~rn------qG~~~~a~rly---------------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~-----  336 (425)
T KOG2695|consen  283 CRN------QGNGWCAQRLY---------------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKS-----  336 (425)
T ss_pred             ecc------cCCCcceEEEE---------------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccc-----
Confidence            873      22233333333               4566777766553357899999999999999997654110     


Q ss_pred             CCCCcccccccccccCCCCCccc-eeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          259 SPPPCVNYFCPMHLSEHGRSSLH-LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       259 ~~~~~~~~~~~~~~~~~g~~~~~-i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                           +..+       .||-+.. -.-+-..+....+++++.|...+||.+.++.
T Consensus       337 -----V~qY-------eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  337 -----VMQY-------EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             -----eeee-------ecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence                 2222       3332210 1112345667789999999999999999864

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.19  E-value=0.00025  Score=73.05  Aligned_cols=246  Identities=13%  Similarity=0.112  Sum_probs=148.6

Q ss_pred             CceEEEEeCCCCCEEEEEeCCC---------------cEEEEeCCCCeEEEEEccCCCCc--eE-EEEEeeCCCCcEEEE
Q 004290           51 GCVNAISWNSKGSLLISGSDDT---------------HINVWSYSSRKLLHSIETGHSAN--VF-CTKFVPETSDELVVS  112 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~---------------~v~iWd~~~~~~~~~~~~~h~~~--V~-~v~~~p~~~~~~l~s  112 (763)
                      ..|.-+.|+|.+++|.+-+.-.               .+.+||+.+|..+..+ .+-..+  .+ -+.|+-+  +.+++-
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf-~~~~q~~~~Wp~~k~s~~--D~y~AR  148 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF-NGISQPYLGWPVLKFSID--DKYVAR  148 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec-cccCCcccccceeeeeec--chhhhh
Confidence            4589999999999999876533               4999999999999888 444444  44 6788887  566555


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC-CCCEEEE-----EeCCCcEEEEECCCCCCCCCC
Q 004290          113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWS-----ASEDGTLRQHDFRQGSSCPPA  186 (763)
Q Consensus       113 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-~~~~l~s-----~s~dg~i~iwd~~~~~~~~~~  186 (763)
                      . ....++|+++ +..-.      ..+...++  ...|....|+|. ++..|+.     .+.++++++|.+..++.+...
T Consensus       149 v-v~~sl~i~e~-t~n~~------~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk  218 (561)
T COG5354         149 V-VGSSLYIHEI-TDNIE------EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK  218 (561)
T ss_pred             h-ccCeEEEEec-CCccc------cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee
Confidence            4 3457999997 32211      12223332  356778888885 2233332     456788999998865533100


Q ss_pred             -----------CCCCcccce-------------------EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-
Q 004290          187 -----------GSSHQECRN-------------------ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-  235 (763)
Q Consensus       187 -----------~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs-  235 (763)
                                 .........                   .++.++..   .+.......++|...+|.|. ++.|++.+ 
T Consensus       219 ~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~---~i~V~~~~~~pVhdf~W~p~-S~~F~vi~g  294 (561)
T COG5354         219 NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER---SIPVEKDLKDPVHDFTWEPL-SSRFAVISG  294 (561)
T ss_pred             eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc---ccceeccccccceeeeeccc-CCceeEEec
Confidence                       000000011                   11111111   11111134678999999997 56665544 


Q ss_pred             -CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCeEEEEECCCC
Q 004290          236 -SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHA  311 (763)
Q Consensus       236 -~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~---d~~i~iwd~~~~  311 (763)
                       .+..+-++|++.. .              ..+.        ... .-+.+.|+|.+++++.++-   .|.|.+||....
T Consensus       295 ~~pa~~s~~~lr~N-l--------------~~~~--------Pe~-~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         295 YMPASVSVFDLRGN-L--------------RFYF--------PEQ-KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             ccccceeecccccc-e--------------EEec--------CCc-ccccccccCcccEEEEecCCccccceEEeccCCc
Confidence             7788999999864 1              1111        111 2455789999999999876   478999998874


Q ss_pred             CccceEeecCCCCeeeeeccCCCCccc
Q 004290          312 GGRAMRYTVGDASKIMSFTPTLNGLEL  338 (763)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~p~~~~~~~  338 (763)
                      . .......+...+...|+|+++-...
T Consensus       351 f-~~~~~~~~~n~s~~~wspd~qF~~~  376 (561)
T COG5354         351 F-KVAGAFNGLNTSYCDWSPDGQFYDT  376 (561)
T ss_pred             e-EEEEEeecCCceEeeccCCceEEEe
Confidence            3 2222223344455668887654443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=3.4e-05  Score=83.61  Aligned_cols=191  Identities=14%  Similarity=0.167  Sum_probs=126.9

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      .+.+.|++++  +++|+-|..+|.|++.+....-  .+. ..|...        +..|.+++||+.||+|.|-.+-+.+.
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~-~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTN-FDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccc-cccccc--------ccCCceEEEecCCCcEEEeeccCCcc
Confidence            4567788876  7899999999999999986443  333 345443        33389999999999999998876432


Q ss_pred             CCCCCCCCCCceeeecccCceeEEEEecC----CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004290          130 RGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (763)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (763)
                                ...+ ....++.+|+++|+    ....+++||.-| +.++.-+=-...                      
T Consensus       106 ----------~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk----------------------  151 (846)
T KOG2066|consen  106 ----------ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK----------------------  151 (846)
T ss_pred             ----------ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc----------------------
Confidence                      2222 25678999999995    346788999988 766642211100                      


Q ss_pred             eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEE
Q 004290          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (763)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v  285 (763)
                      ..+ ......++|.++.|.   |+++|-++.+| |++||+.+.+.+..++.+...++.               ..--..+
T Consensus       152 ~~v-~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~---------------e~fpphl  211 (846)
T KOG2066|consen  152 DSV-VLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP---------------ELFPPHL  211 (846)
T ss_pred             cce-eeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc---------------ccCCCce
Confidence            000 112346789999996   46888777655 799999998887776544322111               0013457


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECC
Q 004290          286 TFSPNGEEVLLSYSGEHVYLMDVN  309 (763)
Q Consensus       286 ~~spdg~~l~~~s~d~~i~iwd~~  309 (763)
                      .|.++.+ |+.|-. .+|+|..++
T Consensus       212 ~W~~~~~-LVIGW~-d~v~i~~I~  233 (846)
T KOG2066|consen  212 HWQDEDR-LVIGWG-DSVKICSIK  233 (846)
T ss_pred             EecCCCe-EEEecC-CeEEEEEEe
Confidence            7887765 454544 477888777

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.18  E-value=0.00021  Score=74.23  Aligned_cols=254  Identities=11%  Similarity=0.087  Sum_probs=137.8

Q ss_pred             ceEEEEeCCCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEEcc--CCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004290           52 CVNAISWNSKGSLLISGSD-----------DTHINVWSYSSRKLLHSIET--GHSANVFCTKFVPETSDELVVSGAGDAE  118 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~-----------D~~v~iWd~~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~l~s~s~dg~  118 (763)
                      .|.-+.|||+.++|+|-+.           -..++|||+.+|...+.|..  +....-.-+.|+.+  +.++|.-.. ..
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D--dKy~Arm~~-~s  327 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD--DKYFARMTG-NS  327 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccC--CceeEEecc-ce
Confidence            4889999999999998764           25799999999998888732  11122235789998  788887766 56


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC--C---CcEEEEECCCCCCCC---------
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE--D---GTLRQHDFRQGSSCP---------  184 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~--d---g~i~iwd~~~~~~~~---------  184 (763)
                      |.||+.....          ++..-.--...|....|+| .+++||--..  +   ..+.+-.+-+.+.+.         
T Consensus       328 isIyEtpsf~----------lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsD  396 (698)
T KOG2314|consen  328 ISIYETPSFM----------LLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSD  396 (698)
T ss_pred             EEEEecCcee----------eecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeec
Confidence            8899877421          1111111234577778888 4455543221  0   122233332222110         


Q ss_pred             --CCCCCCcccceEEEecCCCce-------eeccCC---------CCCccceEEEEEeCCCCcEEEEEeC---CCcEEEE
Q 004290          185 --PAGSSHQECRNILLDLRCGAK-------RSLADP---------PKQTLSLKSCDISSTRPHLLLVGGS---DAFARLY  243 (763)
Q Consensus       185 --~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---------~~~~~~v~~i~~~p~~~~~l~sgs~---Dg~i~iw  243 (763)
                        ...+......+...+-++...       ..+...         -.....|...+|-|. |+.|++-+.   ..++.+|
T Consensus       397 ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~-gdkF~vi~g~~~k~tvsfY  475 (698)
T KOG2314|consen  397 CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPH-GDKFAVISGNTVKNTVSFY  475 (698)
T ss_pred             cEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccC-CCeEEEEEccccccceeEE
Confidence              000000111111111111000       001111         112345778899997 566665543   3568888


Q ss_pred             eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCeEEEEECCCCCccceEeec
Q 004290          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTV  320 (763)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~---d~~i~iwd~~~~~~~~~~~~~  320 (763)
                      -+.+....         +..+..+          .....+.|.|+|.|++++++.-   .|.+.++|+........-...
T Consensus       476 ~~e~~~~~---------~~lVk~~----------dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~e  536 (698)
T KOG2314|consen  476 AVETNIKK---------PSLVKEL----------DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPE  536 (698)
T ss_pred             EeecCCCc---------hhhhhhh----------cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcc
Confidence            87742110         0111111          1114788999999999888754   789999999863222222222


Q ss_pred             CCCCeeeeeccCCCCcccC
Q 004290          321 GDASKIMSFTPTLNGLELQ  339 (763)
Q Consensus       321 ~~~~~~~~~~p~~~~~~~~  339 (763)
                      ....+.+.|.|.+..+...
T Consensus       537 h~~at~veWDPtGRYvvT~  555 (698)
T KOG2314|consen  537 HFAATEVEWDPTGRYVVTS  555 (698)
T ss_pred             ccccccceECCCCCEEEEe
Confidence            2334556677776655433

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=2.9e-05  Score=78.45  Aligned_cols=220  Identities=12%  Similarity=0.079  Sum_probs=142.3

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC--Ce-EEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-CCcEEEEEC
Q 004290           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RK-LLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFNL  124 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~--~~-~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-dg~I~iwd~  124 (763)
                      |.+.|+.+.-+ -.+++.+++.||.++.|.-..  +. .+..+ ..|...|.+++.+.+  +.++.|.+. |..++++|+
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhF-raHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHF-RAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhh-HHHHHHHHhhhcccc--ceeEeeccCcccceeEEEe
Confidence            77777776644 457899999999999998643  32 23333 678899999999998  789999777 999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC--CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (763)
                      ...+-..        ...+.-..+.+. ...+|.+.  .+.++.-.++.|.++|-+...+.                   
T Consensus        84 En~Dmin--------miKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-------------------  135 (558)
T KOG0882|consen   84 ENFDMIN--------MIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-------------------  135 (558)
T ss_pred             eccchhh--------hcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCc-------------------
Confidence            8633110        111111222222 22233221  23334446789999997655421                   


Q ss_pred             CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC-CCCCcc-cCCCCCCCCcccccccccccCCCCCcc
Q 004290          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTS-CQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (763)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (763)
                          .......|..+|..+.++|. ++.+++....|.|.-|.... .+.... +........        .+........
T Consensus       136 ----~~~fkklH~sPV~~i~y~qa-~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT--------dLy~f~K~Kt  202 (558)
T KOG0882|consen  136 ----DGYFKKLHFSPVKKIRYNQA-GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET--------DLYGFPKAKT  202 (558)
T ss_pred             ----cceecccccCceEEEEeecc-ccceeeccccceeEeecCCCcccCccccccccccccc--------hhhccccccc
Confidence                12222347788999999997 68899998899999998873 221111 110000000        0100111122


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCc
Q 004290          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG  313 (763)
Q Consensus       281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~  313 (763)
                      ..+++.|+|+|..+.+-+.|..|++++..+++.
T Consensus       203 ~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  203 EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             CccceEEccccCcccccCcccEEEEEEeccchh
Confidence            478999999999999999999999999999763

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.13  E-value=0.00012  Score=86.10  Aligned_cols=219  Identities=16%  Similarity=0.171  Sum_probs=134.0

Q ss_pred             ccCceEEEEeCCCCCEEEEEeC---C---CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---CCcE
Q 004290           49 HQGCVNAISWNSKGSLLISGSD---D---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEV  119 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~---D---~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---dg~I  119 (763)
                      +.+.-..++|..||+++|+.+.   .   ..+|||+-+ |....+- ..-.+--.+++|-|.  |++||+...   ...|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPs--G~lIA~~q~~~~~~~V  283 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPS--GNLIASSQRLPDRHDV  283 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCC--CCEEEEEEEcCCCcEE
Confidence            4556678999999999998764   2   579999976 5544433 333344467899999  799998775   3446


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      .+|.-+-...       .+....+......|..|.|++ ++.+|+....|. |.+|-..+..                |-
T Consensus       284 vFfErNGLrh-------geF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYH----------------WY  338 (928)
T PF04762_consen  284 VFFERNGLRH-------GEFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYH----------------WY  338 (928)
T ss_pred             EEEecCCcEe-------eeEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCE----------------EE
Confidence            6665442110       011112223556799999999 668888776554 9999876643                11


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC----CCCCC------------------cccCCC
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR----MLPPL------------------TSCQKR  257 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~----~~~~~------------------~~~~~~  257 (763)
                      ++    ..+...  ....+..+.|+|.++..|.+.+.+|.+..++..    .+...                  +.+...
T Consensus       339 LK----qei~~~--~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a  412 (928)
T PF04762_consen  339 LK----QEIRFS--SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRA  412 (928)
T ss_pred             EE----EEEEcc--CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccccc
Confidence            11    011111  112234488999888888888887777655443    11100                  000000


Q ss_pred             C-CCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          258 M-SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       258 ~-~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      . .||.|...+        .. ..+|..++|++++..+++-..||.|.+|.....
T Consensus       413 ~VPPPMs~~~l--------~~-~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  413 VVPPPMSSYEL--------EL-PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             CCCchHhceEE--------cC-CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence            0 111111111        11 126999999999988999999999999986653

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.11  E-value=4.9e-05  Score=83.32  Aligned_cols=200  Identities=16%  Similarity=0.173  Sum_probs=134.2

Q ss_pred             CCCCCchhhhhhccccCCC----cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC
Q 004290            5 PFHDGSIYDMLDTRHTDTR----PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS   80 (763)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~   80 (763)
                      .|+-.....+...-+++..    +..+..+--.+  ..+.+..+...-..+.|+-++  .++++|.+|...|+|.+-|..
T Consensus       130 ~~~~~s~~~M~~~~~~~~~~~i~Gg~Q~~li~~D--l~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~  205 (1118)
T KOG1275|consen  130 DFTCPSMTKMASSLHMGPSTLIMGGLQEKLIHID--LNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPN  205 (1118)
T ss_pred             cccCCCHHHHHHHhccCCcceeecchhhheeeee--cccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCC
Confidence            3555556666655555443    22333333333  344444444443444566665  458999999999999999999


Q ss_pred             CCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---------CCcEEEEECCCCCCCCCCCCCCCCceeeecccCcee
Q 004290           81 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK  151 (763)
Q Consensus        81 ~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~  151 (763)
                      +-+.++++ ..|++.|.++...    |++|++|+.         |..|+|||++...          .+..+.-+.++ .
T Consensus       206 s~~~iht~-~aHs~siSDfDv~----GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr----------al~PI~~~~~P-~  269 (1118)
T KOG1275|consen  206 SFETIHTF-DAHSGSISDFDVQ----GNLLITCGYSMRRYNLAMDPFVKVYDLRMMR----------ALSPIQFPYGP-Q  269 (1118)
T ss_pred             cCceeeee-eccccceeeeecc----CCeEEEeecccccccccccchhhhhhhhhhh----------ccCCcccccCc-h
Confidence            99999999 7999999887765    789999985         5668999999732          22333323333 4


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEE
Q 004290          152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL  231 (763)
Q Consensus       152 ~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l  231 (763)
                      -+.|+|.=...++.++..|...+-|..+-....         ....+            .......+.++++++. ++.+
T Consensus       270 flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~---------~~~~~------------v~p~~s~i~~fDiSsn-~~al  327 (1118)
T KOG1275|consen  270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP---------AGVKM------------VNPNGSGISAFDISSN-GDAL  327 (1118)
T ss_pred             hhhhcccccceEEEEecccceeeccccccCCCc---------cceeE------------EccCCCcceeEEecCC-CceE
Confidence            567888777788899999999999944332210         00000            0111234889999996 7999


Q ss_pred             EEEeCCCcEEEEeCC
Q 004290          232 LVGGSDAFARLYDRR  246 (763)
Q Consensus       232 ~sgs~Dg~i~iwd~~  246 (763)
                      |.|..+|.|.+|--+
T Consensus       328 afgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  328 AFGDHEGHVNLWADR  342 (1118)
T ss_pred             EEecccCcEeeecCC
Confidence            999999999999744

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.07  E-value=0.00093  Score=66.89  Aligned_cols=189  Identities=14%  Similarity=0.158  Sum_probs=117.1

Q ss_pred             eEEEEeC-CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcc---C-CCCceEEEEEeeCCCCcEEEEEeCC--------CcE
Q 004290           53 VNAISWN-SKGSLLISGSDDTHINVWSYSSRKLLHSIET---G-HSANVFCTKFVPETSDELVVSGAGD--------AEV  119 (763)
Q Consensus        53 V~~l~fs-p~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~---~-h~~~V~~v~~~p~~~~~~l~s~s~d--------g~I  119 (763)
                      ...+++. +++.++++ ... .+.++|+.+++....+..   . .....+.+++.|+  |++.++....        |.|
T Consensus        42 ~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEE
T ss_pred             CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccce
Confidence            6778887 66655554 444 456669998865433311   1 3456789999999  7888876654        446


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      ..++.. +.           ...+.......+.|+|+|++..++++-+..+.|..+++......       ......+.+
T Consensus       118 ~~~~~~-~~-----------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~-------~~~~~~~~~  178 (246)
T PF08450_consen  118 YRIDPD-GK-----------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE-------LSNRRVFID  178 (246)
T ss_dssp             EEEETT-SE-----------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC-------EEEEEEEEE
T ss_pred             EEECCC-Ce-----------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccc-------eeeeeeEEE
Confidence            666665 11           23333345668899999965556667788889999998754310       001122222


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                      +.           ........++++.+ +++.++....+.|.++|.+ ++.+..+..+                   .. 
T Consensus       179 ~~-----------~~~g~pDG~~vD~~-G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-------------------~~-  225 (246)
T PF08450_consen  179 FP-----------GGPGYPDGLAVDSD-GNLWVADWGGGRIVVFDPD-GKLLREIELP-------------------VP-  225 (246)
T ss_dssp             -S-----------SSSCEEEEEEEBTT-S-EEEEEETTTEEEEEETT-SCEEEEEE-S-------------------SS-
T ss_pred             cC-----------CCCcCCCcceEcCC-CCEEEEEcCCCEEEEECCC-ccEEEEEcCC-------------------CC-
Confidence            22           22235778999996 6788887788999999988 6544333111                   01 


Q ss_pred             cceeEEEEc-CCCCEEEEEe
Q 004290          280 LHLTHVTFS-PNGEEVLLSY  298 (763)
Q Consensus       280 ~~i~~v~~s-pdg~~l~~~s  298 (763)
                       .+++++|. ++.+.|++.+
T Consensus       226 -~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  226 -RPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -SEEEEEEESTTSSEEEEEE
T ss_pred             -CEEEEEEECCCCCEEEEEe
Confidence             48999994 7777776654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.06  E-value=0.0014  Score=65.54  Aligned_cols=217  Identities=12%  Similarity=0.052  Sum_probs=130.1

Q ss_pred             EEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290           55 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  133 (763)
Q Consensus        55 ~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~  133 (763)
                      +..|.+ ++.++++--..+.|..|+..+++..... ..  . ...+.+...  +..|+.+... .+.++|+.++.-    
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~--~-~~G~~~~~~--~g~l~v~~~~-~~~~~d~~~g~~----   72 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LP--G-PNGMAFDRP--DGRLYVADSG-GIAVVDPDTGKV----   72 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SS--S-EEEEEEECT--TSEEEEEETT-CEEEEETTTTEE----
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cC--C-CceEEEEcc--CCEEEEEEcC-ceEEEecCCCcE----
Confidence            577888 7888888888899999999988654322 11  1 778888843  2455555554 456668876431    


Q ss_pred             CCCCCCceeee--c-ccCceeEEEEecCCCCEEEEEeCC--------CcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290          134 DNAITPSALYQ--C-HTRRVKKLAVEVGNPHVVWSASED--------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (763)
Q Consensus       134 ~~~~~~~~~~~--~-h~~~v~~l~~sp~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (763)
                          +.+....  . .....+.+++.| ++++.++....        |.|..++.. ++.            ..+.    
T Consensus        73 ----~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~------------~~~~----  130 (246)
T PF08450_consen   73 ----TVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV------------TVVA----  130 (246)
T ss_dssp             ----EEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE------------EEEE----
T ss_pred             ----EEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE------------EEEe----
Confidence                1222221  1 345688999999 55666665543        456667665 320            1111    


Q ss_pred             CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC-CcccCCCCCCCCcccccccccccCCCCCccc
Q 004290          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (763)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  281 (763)
                                ......+.|+|+|++..++++-+..+.|..|++..... +..          ...+  .++  .+.. ..
T Consensus       131 ----------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~----------~~~~--~~~--~~~~-g~  185 (246)
T PF08450_consen  131 ----------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN----------RRVF--IDF--PGGP-GY  185 (246)
T ss_dssp             ----------EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE----------EEEE--EE---SSSS-CE
T ss_pred             ----------cCcccccceEECCcchheeecccccceeEEEeccccccceee----------eeeE--EEc--CCCC-cC
Confidence                      01234689999998433455667788899999864321 110          0000  000  0011 13


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeec
Q 004290          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT  330 (763)
Q Consensus       282 i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  330 (763)
                      .-.+++..+|+..++....+.|.+++.. ++...........+..++|.
T Consensus       186 pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  186 PDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             EEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred             CCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence            7789999999988887889999999988 45444444444567777773

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.04  E-value=0.00061  Score=73.37  Aligned_cols=202  Identities=10%  Similarity=0.077  Sum_probs=115.4

Q ss_pred             CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCc-EEEEEeC---CCcEEEEECCCCCCCCCCCCCCCCceeeeccc
Q 004290           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHT  147 (763)
Q Consensus        72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~-~l~s~s~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~  147 (763)
                      ..|.+-|..... .+.+..+  +.+..-.|+|+  ++ .++..+.   +..|.++|+.++.           ...+....
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~--~~~~~p~wSpD--G~~~i~y~s~~~~~~~Iyv~dl~tg~-----------~~~lt~~~  232 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKG--GLNIFPKWANK--EQTAFYYTSYGERKPTLYKYNLYTGK-----------KEKIASSQ  232 (419)
T ss_pred             ceEEEECCCCCc-eeEEccC--CCeEeEEECCC--CCcEEEEEEccCCCCEEEEEECCCCc-----------EEEEecCC
Confidence            456666665443 3334233  37789999999  55 3554443   3558888887643           22233345


Q ss_pred             CceeEEEEecCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeC
Q 004290          148 RRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS  225 (763)
Q Consensus       148 ~~v~~l~~sp~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p  225 (763)
                      +......|+|++..++++.+.++  .|.++|+..++.                       ..+...+.   ......|+|
T Consensus       233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-----------------------~~LT~~~~---~d~~p~~SP  286 (419)
T PRK04043        233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-----------------------TQITNYPG---IDVNGNFVE  286 (419)
T ss_pred             CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-----------------------EEcccCCC---ccCccEECC
Confidence            55667789996656666665554  577777766541                       11111111   122347999


Q ss_pred             CCCcEEEEEeCCC--cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---
Q 004290          226 TRPHLLLVGGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---  300 (763)
Q Consensus       226 ~~~~~l~sgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d---  300 (763)
                      ++..++++....+  .|.++|+.+++.....                   ..+.     ....|+|||++|+..+..   
T Consensus       287 DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-------------------~~g~-----~~~~~SPDG~~Ia~~~~~~~~  342 (419)
T PRK04043        287 DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-------------------FHGK-----NNSSVSTYKNYIVYSSRETNN  342 (419)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCeEeCc-------------------cCCC-----cCceECCCCCEEEEEEcCCCc
Confidence            8444444443444  4667777665421100                   0111     123799999998877653   


Q ss_pred             ------CeEEEEECCCCCccceEeecCCCCeeeeeccCCCCcccCCC
Q 004290          301 ------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP  341 (763)
Q Consensus       301 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  341 (763)
                            ..|++.|+.++.......  +.......|+|+++.+.+...
T Consensus       343 ~~~~~~~~I~v~d~~~g~~~~LT~--~~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        343 EFGKNTFNLYLISTNSDYIRRLTA--NGVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             ccCCCCcEEEEEECCCCCeEECCC--CCCcCCeEECCCCCEEEEEEc
Confidence                  378888988865332222  223345789998887766543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.00036  Score=75.96  Aligned_cols=166  Identities=14%  Similarity=0.170  Sum_probs=109.8

Q ss_pred             eeccccCceEEEEeCC-------------CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC---CCc
Q 004290           45 ELEGHQGCVNAISWNS-------------KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET---SDE  108 (763)
Q Consensus        45 ~l~gH~~~V~~l~fsp-------------~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~---~~~  108 (763)
                      .|..|.+.|.-..+.-             +|++++|||.||+|.|-.+.+.+...++  ....++.+++++|+-   ..+
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk  130 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSK  130 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhh
Confidence            3455766666555544             3999999999999999999888877766  345789999999971   246


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004290          109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (763)
Q Consensus       109 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  188 (763)
                      .+++|+.-| +.++.-+-....       . ...+..-.++|.++.|.   +++++=++.+| |++||+.+.+.+..+..
T Consensus       131 ~fv~GG~ag-lvL~er~wlgnk-------~-~v~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  131 QFVSGGMAG-LVLSERNWLGNK-------D-SVVLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             heeecCcce-EEEehhhhhcCc-------c-ceeeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCC
Confidence            899999888 766654321110       1 11355667899999995   47887666554 99999988775432221


Q ss_pred             CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                      .+..                   +........+.|.+.  ..|+.|- ..+|+|..++.
T Consensus       198 p~~~-------------------~R~e~fpphl~W~~~--~~LVIGW-~d~v~i~~I~~  234 (846)
T KOG2066|consen  198 PSQS-------------------VRPELFPPHLHWQDE--DRLVIGW-GDSVKICSIKK  234 (846)
T ss_pred             CCCC-------------------CCcccCCCceEecCC--CeEEEec-CCeEEEEEEec
Confidence            1100                   001122345778775  4666664 45788888873

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.99  E-value=6.1e-05  Score=80.19  Aligned_cols=170  Identities=13%  Similarity=0.112  Sum_probs=122.2

Q ss_pred             CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC-----CCCCCCCceeeecccCceeEEEEecCCCCEEEEE
Q 004290           92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL-----DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA  166 (763)
Q Consensus        92 h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~  166 (763)
                      ......|++|+.+  ..++++|+.||.+++..+.+......     .......-+++.+|...|.-+.|+. ..+.+.|.
T Consensus        13 nnvkL~c~~WNke--~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtS   89 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKE--SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTS   89 (1189)
T ss_pred             CCceEEEEEEccc--CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-cccccccc
Confidence            4456789999998  58999999999999999876322110     1111223467889999999999987 55778788


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004290          167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (763)
Q Consensus       167 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~  246 (763)
                      ..+|.|.+|-+-.++-+.                       -.........|.+++|+.+ |..++..-.||.|.+=.+.
T Consensus        90 Dt~GlIiVWmlykgsW~E-----------------------EMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIVGsvd  145 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCE-----------------------EMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVIVGSVD  145 (1189)
T ss_pred             CCCceEEEEeeecccHHH-----------------------HHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEEEEeec
Confidence            899999999998775320                       0011123567899999997 6788888888888765554


Q ss_pred             CCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      ......                 .     ...+...+.+.|++|.+.++.+-.+|.+.++|...
T Consensus       146 GNRIwg-----------------K-----eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  146 GNRIWG-----------------K-----ELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQG  187 (1189)
T ss_pred             cceecc-----------------h-----hcchheccceeecccHHHHHhhhcCCcEEEecccc
Confidence            322110                 0     01111366789999999999999999999999876

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.95  E-value=7e-06  Score=86.39  Aligned_cols=167  Identities=23%  Similarity=0.332  Sum_probs=113.9

Q ss_pred             ccccCceEEEEeCC-CCCEEEEEe----CCCcEEEEeCCCC----eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290           47 EGHQGCVNAISWNS-KGSLLISGS----DDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (763)
Q Consensus        47 ~gH~~~V~~l~fsp-~g~~Lasgs----~D~~v~iWd~~~~----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg  117 (763)
                      .+|...+++++|++ |.+.||.|-    .|..+.|||+.++    +....|..+......+++|..+  .+++++|...+
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd--~klvlaGm~sr  176 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD--TKLVLAGMTSR  176 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccC--cchhhcccccc
Confidence            46778899999998 567788773    3667999999876    2222332223445668889876  68889999899


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEE-CCCCCCCCCCCCCCcccceE
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD-FRQGSSCPPAGSSHQECRNI  196 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~  196 (763)
                      .++++|++...           .....-.+..+..+...|-.+.++++-. ||.|-+|| .+.-+.....          
T Consensus       177 ~~~ifdlRqs~-----------~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~----------  234 (783)
T KOG1008|consen  177 SVHIFDLRQSL-----------DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQI----------  234 (783)
T ss_pred             hhhhhhhhhhh-----------hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHH----------
Confidence            99999999522           2222223445677888887778886654 99999999 4444322100          


Q ss_pred             EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC-CcEEEEeCCC
Q 004290          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRM  247 (763)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D-g~i~iwd~~~  247 (763)
                                .+.........+..++|.|....++++...| ++|++||++.
T Consensus       235 ----------i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  235 ----------ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ----------HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence                      0111112233688999999877778887765 7899999874

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.94  E-value=0.0025  Score=75.19  Aligned_cols=264  Identities=15%  Similarity=0.184  Sum_probs=146.1

Q ss_pred             ccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeC---CCcEEEEeCCCCeEEEEEc---cCCCCceEEEE
Q 004290           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIE---TGHSANVFCTK  100 (763)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~---D~~v~iWd~~~~~~~~~~~---~~h~~~V~~v~  100 (763)
                      .|.+++|+-.   +.+..+-+.-.+-=.+++|.|.|++||+...   ...|..|.- +|-.-..|.   ......|..+.
T Consensus       236 ~R~iRVy~Re---G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~  311 (928)
T PF04762_consen  236 RRVIRVYSRE---GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELA  311 (928)
T ss_pred             eeEEEEECCC---ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEE
Confidence            4677777622   2222222222222346899999999998764   345666764 443333331   23457899999


Q ss_pred             EeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290          101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (763)
Q Consensus       101 ~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~  179 (763)
                      |+++  +..|+..-.|. |.+|-..+....        ..+.+. .....+..+.|+|..+..|...+.+|.+..+++.-
T Consensus       312 Wn~d--s~iLAv~~~~~-vqLWt~~NYHWY--------LKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~  380 (928)
T PF04762_consen  312 WNSD--SEILAVWLEDR-VQLWTRSNYHWY--------LKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW  380 (928)
T ss_pred             ECCC--CCEEEEEecCC-ceEEEeeCCEEE--------EEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence            9999  68999877665 999998863321        122222 12334556999998888888888878876654432


Q ss_pred             CCCCCCCCCCCcccceEEEec--------CCCcee-eccC-CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          180 GSSCPPAGSSHQECRNILLDL--------RCGAKR-SLAD-PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~-~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      .................++|.        +...+. ++.. .-.-...|.+++|+++ +..+++-..||.|.+|......
T Consensus       381 ~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~-~~~~avl~~d~~l~~~~~~~~~  459 (928)
T PF04762_consen  381 DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPS-NSRFAVLTSDGSLSIYEWDLKN  459 (928)
T ss_pred             EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCC-CCeEEEEECCCCEEEEEecCCC
Confidence            211111111111222222221        111100 0000 0112457899999997 4569999999999999866543


Q ss_pred             CCcccCCCCCCCCcccccccc--cccCCCCCccceeEEEEcCCCCEEEEEeCC---CeEEEEECCCC
Q 004290          250 PLTSCQKRMSPPPCVNYFCPM--HLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA  311 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~i~~v~~spdg~~l~~~s~d---~~i~iwd~~~~  311 (763)
                      .....     .+.....+...  ...........+..++|..+...++....+   ..+.++++...
T Consensus       460 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  521 (928)
T PF04762_consen  460 MWSVK-----PPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS  521 (928)
T ss_pred             ccccc-----CcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence            21100     00000111000  000001112248889998888776666654   68888888543

>smart00320 WD40 WD40 repeats

Probab=97.92  E-value=3e-05  Score=51.43  Aligned_cols=39  Identities=36%  Similarity=0.553  Sum_probs=36.5

Q ss_pred             CcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEc
Q 004290          659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT  697 (763)
Q Consensus       659 g~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~  697 (763)
                      ++++..+.+|...|++++|+|.+.++++++.|+.|++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            567888999999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.89  E-value=0.0045  Score=61.74  Aligned_cols=217  Identities=12%  Similarity=0.146  Sum_probs=133.7

Q ss_pred             eEEEEeCC-CCCEEEEEeCCCc-EEEEeCCCCeEEEEEccCCCCceE--EEEEeeCCCCcEEEEEeC-----CCcEEEEE
Q 004290           53 VNAISWNS-KGSLLISGSDDTH-INVWSYSSRKLLHSIETGHSANVF--CTKFVPETSDELVVSGAG-----DAEVRLFN  123 (763)
Q Consensus        53 V~~l~fsp-~g~~Lasgs~D~~-v~iWd~~~~~~~~~~~~~h~~~V~--~v~~~p~~~~~~l~s~s~-----dg~I~iwd  123 (763)
                      ...++.+| .+..+|.+-.-|+ +.+||+.+++....+. ...+.-+  ...|+|+  |++|++.-.     .|.|-|||
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-a~~gRHFyGHg~fs~d--G~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-APPGRHFYGHGVFSPD--GRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-CCCCCEEecCEEEcCC--CCEEEEeccccCCCcEEEEEEE
Confidence            34678888 5566777766655 6799999999887773 3222222  4679999  788887543     57899999


Q ss_pred             CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC-------CCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-------DGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (763)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~  196 (763)
                      ....         ...+..+..|.-....|.+.|++ ..|+.+..       .|..++ ++.+.           .....
T Consensus        84 ~~~~---------~~ri~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kL-Nl~tM-----------~psL~  141 (305)
T PF07433_consen   84 AARG---------YRRIGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKL-NLDTM-----------QPSLV  141 (305)
T ss_pred             CcCC---------cEEEeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceec-Chhhc-----------CCceE
Confidence            9931         24467788888888899999954 45544421       122221 22222           23345


Q ss_pred             EEecCCCceeeccCC--CCCccceEEEEEeCCCCcEEEEEeC-CC-------cEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004290          197 LLDLRCGAKRSLADP--PKQTLSLKSCDISSTRPHLLLVGGS-DA-------FARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (763)
Q Consensus       197 ~~~~~~~~~~~~~~~--~~~~~~v~~i~~~p~~~~~l~sgs~-Dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (763)
                      +.+..++........  ..|..+|..+++.++ +. ++.+.. .|       .|-+++..  +.+..+..          
T Consensus       142 ~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~-G~-V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~----------  207 (305)
T PF07433_consen  142 YLDARSGALLEQVELPPDLHQLSIRHLAVDGD-GT-VAFAMQYQGDPGDAPPLVALHRRG--GALRLLPA----------  207 (305)
T ss_pred             EEecCCCceeeeeecCccccccceeeEEecCC-Cc-EEEEEecCCCCCccCCeEEEEcCC--CcceeccC----------
Confidence            566667766655555  447788999999997 43 444432 22       12222222  11111100          


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCC
Q 004290          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG  312 (763)
Q Consensus       267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~  312 (763)
                         .........+ .|-+|++++++.++++++- .+.+.+||..++.
T Consensus       208 ---p~~~~~~l~~-Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  208 ---PEEQWRRLNG-YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR  250 (305)
T ss_pred             ---ChHHHHhhCC-ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence               0000011222 4999999999998877776 8899999999965

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.86  E-value=0.0015  Score=64.19  Aligned_cols=228  Identities=14%  Similarity=0.142  Sum_probs=117.8

Q ss_pred             ceeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004290           43 ERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (763)
Q Consensus        43 ~~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i  121 (763)
                      .+.|.+-...+..|+|+|+.+ ++|+....+.|...+. +|+.++.+...-.+..-.|++.-+  +.++++.-.++.+.+
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~--~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN--GRYVLSEERDQRLYI   90 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST--TEEEEEETTTTEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC--CEEEEEEcCCCcEEE
Confidence            356667667799999999755 5566677788888886 477787774333467889999876  566666656899999


Q ss_pred             EECCCCCCCCCCCCCCCCceee-----ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290          122 FNLSRFSGRGLDDNAITPSALY-----QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (763)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  196 (763)
                      +++........    ......+     ..+...+-.|+|.|.+..++ .+-+.....++.+......         ....
T Consensus        91 ~~~~~~~~~~~----~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~---------~~~~  156 (248)
T PF06977_consen   91 FTIDDDTTSLD----RADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGG---------FDLF  156 (248)
T ss_dssp             EEE----TT------EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-S---------S--E
T ss_pred             EEEeccccccc----hhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCc---------ccee
Confidence            99854221110    0001111     13445688999999655555 5566666677766541100         0000


Q ss_pred             EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (763)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (763)
                      ..+.     ..+.........+.+++++|..+++++.+.....|.++| ..++.+..+.-..          ..+-..  
T Consensus       157 ~~~~-----~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~----------g~~gl~--  218 (248)
T PF06977_consen  157 VSDD-----QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDR----------GFHGLS--  218 (248)
T ss_dssp             EEE------HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-ST----------TGGG-S--
T ss_pred             eccc-----cccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCC----------cccCcc--
Confidence            0000     000101122345789999998888899988999999999 5555432221000          000000  


Q ss_pred             CCccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004290          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLM  306 (763)
Q Consensus       277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iw  306 (763)
                      ..-.+--.|+|.++|+ |+..+.-+..+.|
T Consensus       219 ~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f  247 (248)
T PF06977_consen  219 KDIPQPEGIAFDPDGN-LYIVSEPNLFYRF  247 (248)
T ss_dssp             S---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred             cccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence            1111477899999997 5555566666665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.79  E-value=0.0017  Score=68.95  Aligned_cols=129  Identities=15%  Similarity=0.154  Sum_probs=89.6

Q ss_pred             hccccceeeccccCceEEEEeCC-CCCEEEEE----eCCCcE----EEEeCCCCe--EEEEEccCCCCceEEEEEeeCCC
Q 004290           38 RRLSQERELEGHQGCVNAISWNS-KGSLLISG----SDDTHI----NVWSYSSRK--LLHSIETGHSANVFCTKFVPETS  106 (763)
Q Consensus        38 ~~~~~~~~l~gH~~~V~~l~fsp-~g~~Lasg----s~D~~v----~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~  106 (763)
                      .+++++-.++--.++ .++.||- +...+.|.    +.+|.+    .+|++...+  .+..........|.|++++|+  
T Consensus       194 ~klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~--  270 (545)
T PF11768_consen  194 GKLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPS--  270 (545)
T ss_pred             CcEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcc--
Confidence            345555555543343 5678876 34444433    334443    467766543  222222367789999999999  


Q ss_pred             CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      ...|+.|+.||.|.+||...+            +..+....-.++.++|+| ++.+|++|+..|.+.+||+.-...
T Consensus       271 E~kLvlGC~DgSiiLyD~~~~------------~t~~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  271 EDKLVLGCEDGSIILYDTTRG------------VTLLAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             cceEEEEecCCeEEEEEcCCC------------eeeeeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCcc
Confidence            799999999999999999863            233334556788999999 678999999999999999876643

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.77  E-value=1.5e-05  Score=83.92  Aligned_cols=211  Identities=11%  Similarity=0.154  Sum_probs=134.0

Q ss_pred             ccCceEEEEeCC--CCCEEEEEeCCCcEEEEeCCCCeEE-EEEccCCCCceEEEEEeeCCCCcEEEEEe----CCCcEEE
Q 004290           49 HQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLL-HSIETGHSANVFCTKFVPETSDELVVSGA----GDAEVRL  121 (763)
Q Consensus        49 H~~~V~~l~fsp--~g~~Lasgs~D~~v~iWd~~~~~~~-~~~~~~h~~~V~~v~~~p~~~~~~l~s~s----~dg~I~i  121 (763)
                      ....+.|++++-  +..+|+.|..+|.|-+-.+....-. ..+..+|..++++++|++-. ...||.|-    .|..+.|
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLD-tn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELD-TNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccccc-HHHHHhhhhhhcccCCccc
Confidence            345688888765  4468999999999999887654322 44446888999999999862 45666663    2667999


Q ss_pred             EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004290          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (763)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  201 (763)
                      ||+.+.-....    ..+... .+-.....+++|-. +..++.+|...+.+.++|+|.....         +.       
T Consensus       134 wdi~s~ltvPk----e~~~fs-~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~---------~~-------  191 (783)
T KOG1008|consen  134 WDINSLLTVPK----ESPLFS-SSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDS---------VS-------  191 (783)
T ss_pred             eecccccCCCc----cccccc-cccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhh---------hh-------
Confidence            99987421110    011111 12344566888884 6678889988899999999954311         00       


Q ss_pred             CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEe-CCCCCC-CcccCCCCCCCCcccccccccccCCCCCc
Q 004290          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD-RRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                                .-.+..+..+...|-.++++++.. |+.|-+|| .++.+. +..+....                . ...
T Consensus       192 ----------svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~----------------N-~~~  243 (783)
T KOG1008|consen  192 ----------SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNE----------------N-KKP  243 (783)
T ss_pred             ----------hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCC----------------C-Ccc
Confidence                      001234556777886577887766 99999999 444331 11110000                0 001


Q ss_pred             cceeEEEEcCCCC-EEEEEeC-CCeEEEEECCC
Q 004290          280 LHLTHVTFSPNGE-EVLLSYS-GEHVYLMDVNH  310 (763)
Q Consensus       280 ~~i~~v~~spdg~-~l~~~s~-d~~i~iwd~~~  310 (763)
                      ..+..++|+|... .|++.+. .++|+++++..
T Consensus       244 ~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  244 KQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             cceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            1489999999543 3444454 67999999865

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.77  E-value=0.069  Score=57.62  Aligned_cols=202  Identities=11%  Similarity=0.034  Sum_probs=109.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEE------EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC------TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  134 (763)
Q Consensus        61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~------v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~  134 (763)
                      .+..++.++.++.|.-+|..+|+.+-.........+..      +.-.|--.+..++.++.++.+..+|..+++.     
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~-----  142 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEV-----  142 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCC-----
Confidence            35677788888999999999999887763222110000      0001100145677788899999999987543     


Q ss_pred             CCCCCceeeecccCceeE-EEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCC
Q 004290          135 NAITPSALYQCHTRRVKK-LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK  213 (763)
Q Consensus       135 ~~~~~~~~~~~h~~~v~~-l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (763)
                           +...... +.+.+ ....  + ..++.+..++.|..+|..+++.              +|........ + ....
T Consensus       143 -----~W~~~~~-~~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~--------------~W~~~~~~~~-~-~~~~  197 (394)
T PRK11138        143 -----AWQTKVA-GEALSRPVVS--D-GLVLVHTSNGMLQALNESDGAV--------------KWTVNLDVPS-L-TLRG  197 (394)
T ss_pred             -----cccccCC-CceecCCEEE--C-CEEEEECCCCEEEEEEccCCCE--------------eeeecCCCCc-c-cccC
Confidence                 2222211 12221 1221  3 3555677889999999998863              3332221000 0 0000


Q ss_pred             CccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC--CC
Q 004290          214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NG  291 (763)
Q Consensus       214 ~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp--dg  291 (763)
                      ...++    ..   ...++.++.++.+..+|..+++.+..........              +........+..+|  .+
T Consensus       198 ~~sP~----v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~--------------~~~~~~~~~~~~sP~v~~  256 (394)
T PRK11138        198 ESAPA----TA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG--------------ATEIDRLVDVDTTPVVVG  256 (394)
T ss_pred             CCCCE----EE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCC--------------ccchhcccccCCCcEEEC
Confidence            01111    11   1357778889999999999887654432110000              00000011111122  24


Q ss_pred             CEEEEEeCCCeEEEEECCCCCc
Q 004290          292 EEVLLSYSGEHVYLMDVNHAGG  313 (763)
Q Consensus       292 ~~l~~~s~d~~i~iwd~~~~~~  313 (763)
                      ..|+.++.++.++.+|..+++.
T Consensus       257 ~~vy~~~~~g~l~ald~~tG~~  278 (394)
T PRK11138        257 GVVYALAYNGNLVALDLRSGQI  278 (394)
T ss_pred             CEEEEEEcCCeEEEEECCCCCE
Confidence            5677788899999999998753

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=0.0037  Score=68.89  Aligned_cols=216  Identities=13%  Similarity=0.172  Sum_probs=128.1

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCc-eEEEEEeeCCCCcEEEEEeCCCc-----EEEEECC
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGDAE-----VRLFNLS  125 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~-V~~v~~~p~~~~~~l~s~s~dg~-----I~iwd~~  125 (763)
                      .|.|  |++.+..+|.|+.+|.|.+.+- .-+.++.+ +.+... |..+.....  ..+|++.+.|+.     |+||+++
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~f-qa~~~siv~~L~~~~~--~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGF-QAYEQSIVQFLYILNK--QNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecc-cceeeehh-eecchhhhhHhhcccC--ceEEEEEeecCCCCceEEEEeccc
Confidence            5555  6688999999999998877763 23344666 566655 444433333  368888887765     8999998


Q ss_pred             CCCCCCCCCCCCCCc--eeeec-----ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290          126 RFSGRGLDDNAITPS--ALYQC-----HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (763)
Q Consensus       126 ~~~~~~~~~~~~~~~--~~~~~-----h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  198 (763)
                      ..++...    ..++  ..+..     ...++.+++.+. +-..+|.|-.+|.|..+-=.-..-.         ..    
T Consensus       101 k~~~n~s----P~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDr---------gs----  162 (933)
T KOG2114|consen  101 KVDKNNS----PQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDR---------GS----  162 (933)
T ss_pred             ccCCCCC----cceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhcc---------cc----
Confidence            7532210    1222  11112     345688899987 4578889999999988732111000         00    


Q ss_pred             ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (763)
                              ..........+|+.+++..++...++++. -..|.+|.+....+...            .        ..+.
T Consensus       163 --------r~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~------------~--------ld~~  213 (933)
T KOG2114|consen  163 --------RQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLK------------V--------LDNN  213 (933)
T ss_pred             --------ceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCCccee------------e--------eccC
Confidence                    11111234678999999987443233333 35788888873321100            0        1233


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCC
Q 004290          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD  322 (763)
Q Consensus       279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~  322 (763)
                      +..++|..|++....++++ .+..+++|+.... .+...+..++
T Consensus       214 G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~-~~cfaf~~g~  255 (933)
T KOG2114|consen  214 GISLNCSSFSDGTYQFICA-GSEFLYFYDSDGR-GPCFAFEVGE  255 (933)
T ss_pred             CccceeeecCCCCccEEEe-cCceEEEEcCCCc-ceeeeecCCC
Confidence            4468888888765544444 3567899988863 3444444333

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.69  E-value=0.0042  Score=61.91  Aligned_cols=164  Identities=15%  Similarity=0.183  Sum_probs=94.3

Q ss_pred             EEeCCCCCEEEEEeC-----CCcEEEEeCC-CCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-------CCc----
Q 004290           56 ISWNSKGSLLISGSD-----DTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-------DAE----  118 (763)
Q Consensus        56 l~fsp~g~~Lasgs~-----D~~v~iWd~~-~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-------dg~----  118 (763)
                      -.||+||++|.+.=.     .|.|-|||.. +.+.+..+ ..|.-....+.+.|+  +..|+.+..       .|.    
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~kLN  132 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRAKLN  132 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCceecC
Confidence            569999999988633     4789999999 66778888 667666788999999  667776531       122    


Q ss_pred             -------EEEEECCCCCCCCCCCCCCCCce--ee--ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290          119 -------VRLFNLSRFSGRGLDDNAITPSA--LY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG  187 (763)
Q Consensus       119 -------I~iwd~~~~~~~~~~~~~~~~~~--~~--~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  187 (763)
                             +.+.|..++          +.+.  .+  .-|..+|..|++.+ ++..++..-..|       ......    
T Consensus       133 l~tM~psL~~ld~~sG----------~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg-------~~~~~~----  190 (305)
T PF07433_consen  133 LDTMQPSLVYLDARSG----------ALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQG-------DPGDAP----  190 (305)
T ss_pred             hhhcCCceEEEecCCC----------ceeeeeecCccccccceeeEEecC-CCcEEEEEecCC-------CCCccC----
Confidence                   222222221          1122  23  33667888888887 334443322222       111100    


Q ss_pred             CCCcccceEEEecCCCceeeccCC-----CCCccceEEEEEeCCCCcEE-EEEeCCCcEEEEeCCCCCCCc
Q 004290          188 SSHQECRNILLDLRCGAKRSLADP-----PKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLT  252 (763)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~i~~~p~~~~~l-~sgs~Dg~i~iwd~~~~~~~~  252 (763)
                             -.+.-.+.+........     ......+-+|+++++ +.++ +++-.-+.+.+||..++..+.
T Consensus       191 -------PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~-g~~ia~tsPrGg~~~~~d~~tg~~~~  253 (305)
T PF07433_consen  191 -------PLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRD-GRLIAVTSPRGGRVAVWDAATGRLLG  253 (305)
T ss_pred             -------CeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCC-CCEEEEECCCCCEEEEEECCCCCEee
Confidence                   01111111110111111     123456889999997 4555 555567889999999987554

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.65  E-value=0.00022  Score=75.51  Aligned_cols=74  Identities=15%  Similarity=0.206  Sum_probs=63.6

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~  126 (763)
                      .....|.|++++|+.+.|+.|+.||.|++||...+.....   ...-.++.++|+|+  |.++++|+..|.+.+||+.-
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp~--gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHPD--GAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcCC--CcEEEEEcCCceEEEEEeec
Confidence            3677899999999999999999999999999877643322   34456889999999  79999999999999999984

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.62  E-value=0.035  Score=55.08  Aligned_cols=146  Identities=21%  Similarity=0.206  Sum_probs=85.9

Q ss_pred             CCCcEEEEeCCCCeEEEEEccCC-CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC
Q 004290           70 DDTHINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (763)
Q Consensus        70 ~D~~v~iWd~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (763)
                      .+++|..||..+|+.+.....+. .....+.. .+.  +..+++++.++.|..||..+++          .+..+.. .+
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~~--~~~v~~~~~~~~l~~~d~~tG~----------~~W~~~~-~~   66 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATA-VPD--GGRVYVASGDGNLYALDAKTGK----------VLWRFDL-PG   66 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETE-EEE--TTEEEEEETTSEEEEEETTTSE----------EEEEEEC-SS
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceE-EEe--CCEEEEEcCCCEEEEEECCCCC----------EEEEeec-cc
Confidence            36899999999999988873221 12222222 323  4677777899999999998743          2333332 22


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec-CCCceeeccCCCCCccceEEEEEeCCC
Q 004290          149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL-RCGAKRSLADPPKQTLSLKSCDISSTR  227 (763)
Q Consensus       149 ~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~~p~~  227 (763)
                      .+....... + ..++.++.++.|+.+|..+++.              +|.. ....      ............+.   
T Consensus        67 ~~~~~~~~~-~-~~v~v~~~~~~l~~~d~~tG~~--------------~W~~~~~~~------~~~~~~~~~~~~~~---  121 (238)
T PF13360_consen   67 PISGAPVVD-G-GRVYVGTSDGSLYALDAKTGKV--------------LWSIYLTSS------PPAGVRSSSSPAVD---  121 (238)
T ss_dssp             CGGSGEEEE-T-TEEEEEETTSEEEEEETTTSCE--------------EEEEEE-SS------CTCSTB--SEEEEE---
T ss_pred             cccceeeec-c-cccccccceeeeEecccCCcce--------------eeeeccccc------cccccccccCceEe---
Confidence            221111222 3 4555666888999999988862              3331 1110      00001111222332   


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCCccc
Q 004290          228 PHLLLVGGSDAFARLYDRRMLPPLTSC  254 (763)
Q Consensus       228 ~~~l~sgs~Dg~i~iwd~~~~~~~~~~  254 (763)
                      ++.++++..++.|..+|+++++.+...
T Consensus       122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~  148 (238)
T PF13360_consen  122 GDRLYVGTSSGKLVALDPKTGKLLWKY  148 (238)
T ss_dssp             TTEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred             cCEEEEEeccCcEEEEecCCCcEEEEe
Confidence            468888888999999999999865544

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.55  E-value=0.0055  Score=60.89  Aligned_cols=195  Identities=15%  Similarity=0.151  Sum_probs=110.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (763)
Q Consensus        61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (763)
                      ++..+++++.++.|..||..+|+.+..+..  ...+...... .  +..++.++.++.|..+|..+++          .+
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~~~-~--~~~v~v~~~~~~l~~~d~~tG~----------~~   99 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAPVV-D--GGRVYVGTSDGSLYALDAKTGK----------VL   99 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGEEE-E--TTEEEEEETTSEEEEEETTTSC----------EE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccceeee-c--ccccccccceeeeEecccCCcc----------ee
Confidence            566777788999999999999998887732  2222111222 2  4567777788899999988743          23


Q ss_pred             eee-eccc---CceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCcc
Q 004290          141 ALY-QCHT---RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL  216 (763)
Q Consensus       141 ~~~-~~h~---~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (763)
                      ... ....   .....+.... .+..++.+..++.|..+|+++++.              +|........ ....-....
T Consensus       100 W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~--------------~w~~~~~~~~-~~~~~~~~~  163 (238)
T PF13360_consen  100 WSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKL--------------LWKYPVGEPR-GSSPISSFS  163 (238)
T ss_dssp             EEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEE--------------EEEEESSTT--SS--EEEET
T ss_pred             eeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcE--------------EEEeecCCCC-CCcceeeec
Confidence            331 2111   1112222222 246777788899999999999863              2322111000 000000001


Q ss_pred             ceEEEEEeCCCCcEEEEEeCCCc-EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEE
Q 004290          217 SLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL  295 (763)
Q Consensus       217 ~v~~i~~~p~~~~~l~sgs~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~  295 (763)
                      .+..-....+ + .++.++.++. +.+ |+.+++.+...                      ... .+..+ ...++..|+
T Consensus       164 ~~~~~~~~~~-~-~v~~~~~~g~~~~~-d~~tg~~~w~~----------------------~~~-~~~~~-~~~~~~~l~  216 (238)
T PF13360_consen  164 DINGSPVISD-G-RVYVSSGDGRVVAV-DLATGEKLWSK----------------------PIS-GIYSL-PSVDGGTLY  216 (238)
T ss_dssp             TEEEEEECCT-T-EEEEECCTSSEEEE-ETTTTEEEEEE----------------------CSS--ECEC-EECCCTEEE
T ss_pred             ccccceEEEC-C-EEEEEcCCCeEEEE-ECCCCCEEEEe----------------------cCC-CccCC-ceeeCCEEE
Confidence            1122222222 3 6777777775 555 99887532110                      000 12221 346778888


Q ss_pred             EEeCCCeEEEEECCCCCc
Q 004290          296 LSYSGEHVYLMDVNHAGG  313 (763)
Q Consensus       296 ~~s~d~~i~iwd~~~~~~  313 (763)
                      .++.++.|.+||+.+++.
T Consensus       217 ~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  217 VTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             EEETTTEEEEEETTTTEE
T ss_pred             EEeCCCEEEEEECCCCCE
Confidence            888999999999999753

...

>smart00320 WD40 WD40 repeats

Probab=97.46  E-value=0.00024  Score=46.79  Aligned_cols=38  Identities=34%  Similarity=0.688  Sum_probs=34.7

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEe
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS   78 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd   78 (763)
                      +++..+..|...|+++.|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45677889999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.45  E-value=0.023  Score=65.34  Aligned_cols=212  Identities=9%  Similarity=0.045  Sum_probs=128.2

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC--CC
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR--FS  128 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~--~~  128 (763)
                      +.|.++.|..++.-++.+..+|.|.+-|.++......  ..-...|.+++|+|+  +..++.....+++.+-+-.-  -.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--g~vd~GI~aaswS~D--ee~l~liT~~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--GNVDNGISAASWSPD--EELLALITGRQTLLFMTKDFEPIA  144 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeee--eeccCceEEEeecCC--CcEEEEEeCCcEEEEEeccccchh
Confidence            6899999999999999999999999999887643221  234577999999999  68888888878776644310  00


Q ss_pred             CCCC-----------CCCCCCCceeeec---------------------ccCceeEEEEecCCCCEEEEEe----CC-Cc
Q 004290          129 GRGL-----------DDNAITPSALYQC---------------------HTRRVKKLAVEVGNPHVVWSAS----ED-GT  171 (763)
Q Consensus       129 ~~~~-----------~~~~~~~~~~~~~---------------------h~~~v~~l~~sp~~~~~l~s~s----~d-g~  171 (763)
                      .+.+           ...=.+....|.+                     ..+.=++|.|-- ++.+|++..    .+ +.
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCcee
Confidence            0000           0000000000110                     112234588876 667887732    23 79


Q ss_pred             EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe---CCCcEEEEeCCCC
Q 004290          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---SDAFARLYDRRML  248 (763)
Q Consensus       172 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs---~Dg~i~iwd~~~~  248 (763)
                      |++||-. +..-.                       ..  ....+-=.+++|-|. |.++++-.   +|+.|.+|.....
T Consensus       224 irV~drE-g~Lns-----------------------~s--e~~~~l~~~LsWkPs-gs~iA~iq~~~sd~~IvffErNGL  276 (1265)
T KOG1920|consen  224 IRVYDRE-GALNS-----------------------TS--EPVEGLQHSLSWKPS-GSLIAAIQCKTSDSDIVFFERNGL  276 (1265)
T ss_pred             EEEeccc-chhhc-----------------------cc--CcccccccceeecCC-CCeEeeeeecCCCCcEEEEecCCc
Confidence            9999976 32110                       00  001122357889996 67777753   5667888876533


Q ss_pred             CCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEE---EeCCCeEEEEECCCCC
Q 004290          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL---SYSGEHVYLMDVNHAG  312 (763)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~---~s~d~~i~iwd~~~~~  312 (763)
                      . ...+..+                 .......|..++|..++..|++   ......|++|-+.+-.
T Consensus       277 ~-hg~f~l~-----------------~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  277 R-HGEFVLP-----------------FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             c-ccccccC-----------------CcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            2 1111100                 0011113899999999998887   4445669999887743

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.38  E-value=0.0062  Score=66.78  Aligned_cols=110  Identities=10%  Similarity=0.180  Sum_probs=83.2

Q ss_pred             EEEEeCCCCCEEEEEeC----CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           54 NAISWNSKGSLLISGSD----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        54 ~~l~fsp~g~~Lasgs~----D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      +-.+|+|...++|.++-    .|.|.||- ++|++....  ...-.+++++|+|.  .-.|+.|-.-|.+.+|...+.. 
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e-   92 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTE-   92 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccChH--HHHHhhccccceeEEEecCCce-
Confidence            34679999999998864    47788884 566543332  12234578999999  5778888889999999988632 


Q ss_pred             CCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (763)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~  179 (763)
                               .-.....|..+|..+.|++ +|..++|+..-|.|.+|....
T Consensus        93 ---------~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   93 ---------THTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ---------eeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence                     2333457999999999999 668888999999999997653

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.32  E-value=0.0069  Score=65.49  Aligned_cols=123  Identities=16%  Similarity=0.219  Sum_probs=90.9

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~  128 (763)
                      |...|.--++...+++|+.|+.-|.|.+|+-.+++....-..+-.+.+..+..+++  ..++|.|+..|.|.++-++...
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~--e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV--EYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch--hHhhhhhcCCceEEeehhhccC
Confidence            44556666677889999999999999999987776543332344556667777887  6888889999999999888632


Q ss_pred             CCCCCCCCCCCcee-eecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290          129 GRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (763)
Q Consensus       129 ~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~  179 (763)
                      ....     ..+.. -+.|...|++++|++ ++..+++|...|+|..--+..
T Consensus       110 p~~~-----~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  110 PRDL-----DYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCcc-----eeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence            1111     11111 134889999999999 678899999999999887776

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.30  E-value=0.0003  Score=76.95  Aligned_cols=186  Identities=20%  Similarity=0.216  Sum_probs=119.5

Q ss_pred             EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEE
Q 004290           85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW  164 (763)
Q Consensus        85 ~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~  164 (763)
                      .+.| ..|+...+|++|+-.  .+.|+.|+..|.|+++++.++..          .....+|...|+.+.-+.++..+|.
T Consensus      1094 w~~f-rd~~~~fTc~afs~~--~~hL~vG~~~Geik~~nv~sG~~----------e~s~ncH~SavT~vePs~dgs~~Lt 1160 (1516)
T KOG1832|consen 1094 WRSF-RDETALFTCIAFSGG--TNHLAVGSHAGEIKIFNVSSGSM----------EESVNCHQSAVTLVEPSVDGSTQLT 1160 (1516)
T ss_pred             chhh-hccccceeeEEeecC--CceEEeeeccceEEEEEccCccc----------cccccccccccccccccCCcceeee
Confidence            4455 578888999999998  69999999999999999998542          4567899999999998885555555


Q ss_pred             EEeCCC-cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCc-cceEEEEEeCCCCcEEEEEeCCCcEEE
Q 004290          165 SASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT-LSLKSCDISSTRPHLLLVGGSDAFARL  242 (763)
Q Consensus       165 s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~~l~sgs~Dg~i~i  242 (763)
                      +++... -..+|++...-..                             .|. ..-.++.|+.. ...-+.|+.-....+
T Consensus      1161 sss~S~PlsaLW~~~s~~~~-----------------------------~Hsf~ed~~vkFsn~-~q~r~~gt~~d~a~~ 1210 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASSTGGP-----------------------------RHSFDEDKAVKFSNS-LQFRALGTEADDALL 1210 (1516)
T ss_pred             eccccCchHHHhccccccCc-----------------------------cccccccceeehhhh-HHHHHhcccccceEE
Confidence            554444 5678988763211                             011 12245667664 334455666678899


Q ss_pred             EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCC
Q 004290          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD  322 (763)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~  322 (763)
                      ||+.++.++.++..+..            .    . +..-+.+.|+|+..+++   .||  .+||++... ....+..-.
T Consensus      1211 YDvqT~~~l~tylt~~~------------~----~-~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~-aIh~FD~ft 1267 (1516)
T KOG1832|consen 1211 YDVQTCSPLQTYLTDTV------------T----S-SYSNNLAHFSPCDTLIL---NDG--VLWDVRIPE-AIHRFDQFT 1267 (1516)
T ss_pred             EecccCcHHHHhcCcch------------h----h-hhhccccccCCCcceEe---eCc--eeeeeccHH-HHhhhhhhe
Confidence            99999886655322111            0    0 11246788999988765   344  589998853 222222211


Q ss_pred             CCeeeeeccCCCCc
Q 004290          323 ASKIMSFTPTLNGL  336 (763)
Q Consensus       323 ~~~~~~~~p~~~~~  336 (763)
                      ....-.|+|.+..+
T Consensus      1268 ~~~~G~FHP~g~eV 1281 (1516)
T KOG1832|consen 1268 DYGGGGFHPSGNEV 1281 (1516)
T ss_pred             ecccccccCCCceE
Confidence            22223466655444

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.003  Score=63.48  Aligned_cols=97  Identities=14%  Similarity=0.197  Sum_probs=77.9

Q ss_pred             EEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEE
Q 004290           74 INVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL  153 (763)
Q Consensus        74 v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  153 (763)
                      |++.+..+.+... +..+|...|.+++|+|.. ..++..++.+.+|+|.|+++.          ..+..+..+ ..+.++
T Consensus       175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~-~GLl~~asl~nkiki~dlet~----------~~vssy~a~-~~~wSC  241 (463)
T KOG1645|consen  175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFN-EGLLGLASLGNKIKIMDLETS----------CVVSSYIAY-NQIWSC  241 (463)
T ss_pred             eEEeccCCcchhh-cccccchhhhhhccCccc-cceeeeeccCceEEEEecccc----------eeeeheecc-CCceee
Confidence            5555555555544 336888999999999985 448899999999999999973          235556666 789999


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290          154 AVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (763)
Q Consensus       154 ~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~  183 (763)
                      +|.-++.++|+.|-..|.|.+||+|..+..
T Consensus       242 ~wDlde~h~IYaGl~nG~VlvyD~R~~~~~  271 (463)
T KOG1645|consen  242 CWDLDERHVIYAGLQNGMVLVYDMRQPEGP  271 (463)
T ss_pred             eeccCCcceeEEeccCceEEEEEccCCCch
Confidence            999988899999999999999999998744

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.19  E-value=0.022  Score=47.44  Aligned_cols=101  Identities=18%  Similarity=0.174  Sum_probs=71.1

Q ss_pred             eEEEEeCC---CC-CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290           53 VNAISWNS---KG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (763)
Q Consensus        53 V~~l~fsp---~g-~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~  128 (763)
                      |++|++..   +| +.|+.|+.|..||||+-  .+.+..+  .....|.++.-...   ..|+.+-.+|+|-+|+-... 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei--~e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~~~R-   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEI--TETDKVTSLCSLGG---GRFAYALANGTVGVYDRSQR-   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEE--ecccceEEEEEcCC---CEEEEEecCCEEEEEeCcce-
Confidence            67777765   33 58999999999999984  4666776  34567888877766   68999999999999987642 


Q ss_pred             CCCCCCCCCCCceeeecccCceeEEEEecCC---CCEEEEEeCCCcEE
Q 004290          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGN---PHVVWSASEDGTLR  173 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~---~~~l~s~s~dg~i~  173 (763)
                                 +...+ -+..+.+|++...+   -.-|++|-.+|.|-
T Consensus        74 -----------lWRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 -----------LWRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -----------eeeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                       23333 23347777665422   23677888888764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.98  E-value=0.012  Score=64.76  Aligned_cols=71  Identities=13%  Similarity=0.258  Sum_probs=62.6

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (763)
Q Consensus        53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~  126 (763)
                      +++++|+|..-.||.|-.-|.+.+|...+.+ .+++...|..+|..+.|+|+  |..++++..=|.|.+|....
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~htv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THTVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCce-eeeeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeee
Confidence            5679999999999999999999999977654 44554789999999999999  89999999999999999874

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.96  E-value=0.21  Score=48.97  Aligned_cols=182  Identities=14%  Similarity=0.141  Sum_probs=116.4

Q ss_pred             eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004290           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (763)
Q Consensus        46 l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~  125 (763)
                      +.|-+..|.++.|+|+.+.|++........||=..+|+.++++.-..-.....++|.-+  +.+.++--.++.+.++.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~--n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG--NQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC--CEEEEEehhcceEEEEEEc
Confidence            45556669999999999999988888888888778899998884333445567888877  6777777778999998887


Q ss_pred             CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC--CCCCCcccceEEEecCCC
Q 004290          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP--AGSSHQECRNILLDLRCG  203 (763)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~  203 (763)
                      ............-++.....-....-.++|.|.+ +.|+.+-+-.-+.||-+........  ....+.....        
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~--------  229 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRD--------  229 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccc--------
Confidence            5322111000011122222224556789999965 4555666667777777664331100  0000000000        


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                               --...|.++.|++..+.+|+-+..++.+.-.|...
T Consensus       230 ---------~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         230 ---------LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ---------eEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence                     01235678889987778888888888888888764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.88  E-value=0.045  Score=60.79  Aligned_cols=185  Identities=19%  Similarity=0.253  Sum_probs=111.2

Q ss_pred             EeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCc-eeEEEEecCCCCEEEEEeCCCc-----EEE
Q 004290          101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR-VKKLAVEVGNPHVVWSASEDGT-----LRQ  174 (763)
Q Consensus       101 ~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~sp~~~~~l~s~s~dg~-----i~i  174 (763)
                      |++.  +..++.|+.+|.|.+.+-.-           ..+..+.++... |..+ +.-+..++|++.++|+.     |++
T Consensus        31 ~~s~--~~~vvigt~~G~V~~Ln~s~-----------~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llki   96 (933)
T KOG2114|consen   31 CSSS--TGSVVIGTADGRVVILNSSF-----------QLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKI   96 (933)
T ss_pred             EcCC--CceEEEeeccccEEEecccc-----------eeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEE
Confidence            5666  68999999999999988763           335677777777 4444 44435578888887764     899


Q ss_pred             EECCCCCCCCCCCCCCcccceEEEecCCCceeeccC--CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCc
Q 004290          175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD--PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT  252 (763)
Q Consensus       175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~  252 (763)
                      ||+...+.-.     ...|.   +.      ..+..  .+....++.+++.+.+ -+.+|+|-.+|.|..+.-.-.....
T Consensus        97 w~lek~~~n~-----sP~c~---~~------~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrg  161 (933)
T KOG2114|consen   97 WDLEKVDKNN-----SPQCL---YE------HRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRG  161 (933)
T ss_pred             ecccccCCCC-----Cccee---ee------eeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccc
Confidence            9998764110     01111   00      01111  1234567888999887 5899999999999988533211110


Q ss_pred             ccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceE--eecCCCCeeeeec
Q 004290          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR--YTVGDASKIMSFT  330 (763)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~  330 (763)
                      .           +.    ....  ....+||++++..++..++-...-..|.+|.+.... +...  -.+|...++.+++
T Consensus       162 s-----------r~----~~~~--~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~  223 (933)
T KOG2114|consen  162 S-----------RQ----DYSH--RGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFS  223 (933)
T ss_pred             c-----------ce----eeec--cCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecC
Confidence            0           00    0000  112369999999998874444455678888888533 2222  3334444444444


Q ss_pred             cC
Q 004290          331 PT  332 (763)
Q Consensus       331 p~  332 (763)
                      +.
T Consensus       224 ~~  225 (933)
T KOG2114|consen  224 DG  225 (933)
T ss_pred             CC
Confidence            43

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.77  E-value=0.094  Score=59.82  Aligned_cols=212  Identities=15%  Similarity=0.186  Sum_probs=121.7

Q ss_pred             CEEEE-EeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC-----CCcEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004290           63 SLLIS-GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET-----SDELVVSGAGDAEVRLFNLSRFSGRGLDDNA  136 (763)
Q Consensus        63 ~~Las-gs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~-----~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~  136 (763)
                      ++|+. ......|.-.|+++|+.+.........+|..  |.|+.     ....-+.|-.+..+..||.+.......    
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v----  567 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV----  567 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCcee----
Confidence            44443 3456789999999999999984333334544  44431     123456677788999999996421110    


Q ss_pred             CCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCcc
Q 004290          137 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL  216 (763)
Q Consensus       137 ~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (763)
                      ......+ .......|++-+.  ..+||.|+.+|.||+|| +.++..                        -..+++-..
T Consensus       568 ~~~~k~Y-~~~~~Fs~~aTt~--~G~iavgs~~G~IRLyd-~~g~~A------------------------KT~lp~lG~  619 (794)
T PF08553_consen  568 DSQSKQY-SSKNNFSCFATTE--DGYIAVGSNKGDIRLYD-RLGKRA------------------------KTALPGLGD  619 (794)
T ss_pred             ecccccc-ccCCCceEEEecC--CceEEEEeCCCcEEeec-ccchhh------------------------hhcCCCCCC
Confidence            0001111 2344567777765  35888999999999999 332211                        112234567


Q ss_pred             ceEEEEEeCCCCcEEEEEeCCCcEEEEeCC--CCCCC------cccCCCCCCCCcccccccccccCC---CCCccceeEE
Q 004290          217 SLKSCDISSTRPHLLLVGGSDAFARLYDRR--MLPPL------TSCQKRMSPPPCVNYFCPMHLSEH---GRSSLHLTHV  285 (763)
Q Consensus       217 ~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~i~~v  285 (763)
                      +|..|..+.+ |+++++.+ +.++.+++..  .++.-      ..+.....|.+-.-.+.|.|....   +......+..
T Consensus       620 pI~~iDvt~D-GkwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a  697 (794)
T PF08553_consen  620 PIIGIDVTAD-GKWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPA  697 (794)
T ss_pred             CeeEEEecCC-CcEEEEee-cceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeece
Confidence            8999999997 67777665 4677787753  22211      111112223333333444443221   1111135566


Q ss_pred             EEcC---CCCEEEEEeCCCeEEEEECCC
Q 004290          286 TFSP---NGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       286 ~~sp---dg~~l~~~s~d~~i~iwd~~~  310 (763)
                      .|+-   .....++++....+.+|++..
T Consensus       698 ~Fnt~~~~~E~~IvtstG~f~v~Wnf~k  725 (794)
T PF08553_consen  698 KFNTGIGKQETSIVTSTGPFVVTWNFKK  725 (794)
T ss_pred             EEecCCCCccceEEEeccCEEEEEEHHH
Confidence            6652   123456666778999999976

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.73  E-value=0.079  Score=56.32  Aligned_cols=225  Identities=15%  Similarity=0.160  Sum_probs=116.1

Q ss_pred             hhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-c------CCCCceEEEEEee---C
Q 004290           35 SLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-T------GHSANVFCTKFVP---E  104 (763)
Q Consensus        35 ~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~-~------~h~~~V~~v~~~p---~  104 (763)
                      .+.+.+.+...++...++|++++.| |=-++|.|.++|.+.|.|++....+..-. .      .....|+++.|..   .
T Consensus        71 ~~~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~  149 (395)
T PF08596_consen   71 SLKEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG  149 (395)
T ss_dssp             T-SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred             ccccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC
Confidence            3445677778888889999999997 55599999999999999998877776531 1      1345688899983   2


Q ss_pred             CCC---cEEEEEeCCCcEEEEECCC-CCCCCCCCCCCCCceeeecccCceeEEE-EecCC--------------------
Q 004290          105 TSD---ELVVSGAGDAEVRLFNLSR-FSGRGLDDNAITPSALYQCHTRRVKKLA-VEVGN--------------------  159 (763)
Q Consensus       105 ~~~---~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~sp~~--------------------  159 (763)
                      .++   -++++|...|.+.+|.+.- ..+.-.    .........+.++|..|. ++.+.                    
T Consensus       150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~----v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i  225 (395)
T PF08596_consen  150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFS----VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISI  225 (395)
T ss_dssp             TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EE----EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred             CCcccceEEEEEeCCCCEEEEEEecCCCCceE----EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence            112   4788999999999998862 111100    011122224556666665 32211                    


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEe----CCCCcEEEEEe
Q 004290          160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS----STRPHLLLVGG  235 (763)
Q Consensus       160 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~----p~~~~~l~sgs  235 (763)
                      +.+++.+ .+..++++..-+.+..           ...+              ........+.+-    -..+..|++-.
T Consensus       226 ~g~vVvv-Se~~irv~~~~~~k~~-----------~K~~--------------~~~~~~~~~~vv~~~~~~~~~~Lv~l~  279 (395)
T PF08596_consen  226 PGYVVVV-SESDIRVFKPPKSKGA-----------HKSF--------------DDPFLCSSASVVPTISRNGGYCLVCLF  279 (395)
T ss_dssp             -EEEEEE--SSEEEEE-TT---EE-----------EEE---------------SS-EEEEEEEEEEEE-EEEEEEEEEEE
T ss_pred             CcEEEEE-cccceEEEeCCCCccc-----------ceee--------------ccccccceEEEEeecccCCceEEEEEE
Confidence            1244444 4578888887765521           1111              011122233332    11356888889


Q ss_pred             CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004290          236 SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (763)
Q Consensus       236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~  308 (763)
                      .+|.|++|.+...+.+.....+..                 .....+....++++|..++-.+.. .+.++.+
T Consensus       280 ~~G~i~i~SLP~Lkei~~~~l~~~-----------------~d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv  334 (395)
T PF08596_consen  280 NNGSIRIYSLPSLKEIKSVSLPPP-----------------LDSRRLSSSSISRNGDIFYWTGPS-EIQLFSV  334 (395)
T ss_dssp             TTSEEEEEETTT--EEEEEE-SS--------------------HHHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred             CCCcEEEEECCCchHhhcccCCCc-----------------cccccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence            999999999998775543321100                 001124556778899866655443 3333333

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.67  E-value=0.25  Score=57.41  Aligned_cols=209  Identities=10%  Similarity=0.089  Sum_probs=117.4

Q ss_pred             CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcE
Q 004290           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL  172 (763)
Q Consensus        93 ~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i  172 (763)
                      ...|.++.|..+  ...++.+...|.|.+-|..+..           +.....-.+.|.+++|+| +..+++-.+..+++
T Consensus        68 d~~i~s~~fl~d--~~~i~v~~~~G~iilvd~et~~-----------~eivg~vd~GI~aaswS~-Dee~l~liT~~~tl  133 (1265)
T KOG1920|consen   68 DDEIVSVQFLAD--TNSICVITALGDIILVDPETLE-----------LEIVGNVDNGISAASWSP-DEELLALITGRQTL  133 (1265)
T ss_pred             CcceEEEEEecc--cceEEEEecCCcEEEEcccccc-----------eeeeeeccCceEEEeecC-CCcEEEEEeCCcEE
Confidence            358999999998  6788888889999999888632           333444567899999999 56777777776666


Q ss_pred             EEEECCCCCCCCCCC-CCCccc----ceEEE-----ecCCCceee-ccCCC---------CCccceEEEEEeCCCCcEEE
Q 004290          173 RQHDFRQGSSCPPAG-SSHQEC----RNILL-----DLRCGAKRS-LADPP---------KQTLSLKSCDISSTRPHLLL  232 (763)
Q Consensus       173 ~iwd~~~~~~~~~~~-~~~~~~----~~~~~-----~~~~~~~~~-~~~~~---------~~~~~v~~i~~~p~~~~~l~  232 (763)
                      .+- .....++.... ......    ..+=|     +++....+. .....         .....=++|.|--+ |+++|
T Consensus       134 l~m-T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-g~~fA  211 (1265)
T KOG1920|consen  134 LFM-TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-GEYFA  211 (1265)
T ss_pred             EEE-eccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-CcEEE
Confidence            552 22222110000 000000    00001     011000000 00000         01112246889887 78888


Q ss_pred             EEe----CC-CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCeEE
Q 004290          233 VGG----SD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVY  304 (763)
Q Consensus       233 sgs----~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~---d~~i~  304 (763)
                      +..    .+ ..|++||.. +..- ...      +              ....-=.+++|-|.|..+++-..   |+.|.
T Consensus       212 Vs~~~~~~~~RkirV~drE-g~Ln-s~s------e--------------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~Iv  269 (1265)
T KOG1920|consen  212 VSFVESETGTRKIRVYDRE-GALN-STS------E--------------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIV  269 (1265)
T ss_pred             EEEEeccCCceeEEEeccc-chhh-ccc------C--------------cccccccceeecCCCCeEeeeeecCCCCcEE
Confidence            842    33 899999988 3211 100      0              00012356899999998887654   67899


Q ss_pred             EEECCCCCccc--eEeecCCC-CeeeeeccCCCCcccC
Q 004290          305 LMDVNHAGGRA--MRYTVGDA-SKIMSFTPTLNGLELQ  339 (763)
Q Consensus       305 iwd~~~~~~~~--~~~~~~~~-~~~~~~~p~~~~~~~~  339 (763)
                      +|.-+.-..-.  ..++.... ...++|..+...++..
T Consensus       270 ffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~  307 (1265)
T KOG1920|consen  270 FFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVV  307 (1265)
T ss_pred             EEecCCccccccccCCcccccchheeeecCCCCceeee
Confidence            99877633211  11222233 6678888877766653

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.0089  Score=63.88  Aligned_cols=93  Identities=17%  Similarity=0.234  Sum_probs=74.5

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceE-EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF-CTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      ..|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++ .-|..+++ +++|.|+  |++|+.|-.||+|++.|+..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~D--GkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPD--GKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCC--CCEEEEEecCCeEEEEEccCCCc
Confidence            457889999999999999999999999887 6777788 45666777 9999999  89999999999999999997542


Q ss_pred             CCCCCCCCCCcee-eecccCceeEEEEec
Q 004290          130 RGLDDNAITPSAL-YQCHTRRVKKLAVEV  157 (763)
Q Consensus       130 ~~~~~~~~~~~~~-~~~h~~~v~~l~~sp  157 (763)
                                +.. ...-...|.++-|.+
T Consensus        97 ----------l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 ----------LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ----------eeccccccccchheeeccc
Confidence                      221 122445677777764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.65  E-value=0.12  Score=43.19  Aligned_cols=103  Identities=20%  Similarity=0.147  Sum_probs=68.5

Q ss_pred             eEEEEEeeCCC--CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEE
Q 004290           96 VFCTKFVPETS--DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR  173 (763)
Q Consensus        96 V~~v~~~p~~~--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~  173 (763)
                      |+++++..-.+  .+.|+.|+.|..|++|+-..            .+..+. -.+.|++|.-..  +..|+.+-.+|+|-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVG   66 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------IVAEIT-ETDKVTSLCSLG--GGRFAYALANGTVG   66 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------EEEEEe-cccceEEEEEcC--CCEEEEEecCCEEE
Confidence            66777765221  37899999999999998773            345554 456677777665  36788999999999


Q ss_pred             EEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeC---CCCcEEEEEeCCCcEE
Q 004290          174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS---TRPHLLLVGGSDAFAR  241 (763)
Q Consensus       174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p---~~~~~l~sgs~Dg~i~  241 (763)
                      +|+-..                .+|-.+.            ...++++++..   ++-.-|++|-++|.|-
T Consensus        67 vY~~~~----------------RlWRiKS------------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   67 VYDRSQ----------------RLWRIKS------------KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEeCcc----------------eeeeecc------------CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            997532                2232221            12355555543   3334789999998874

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.55  E-value=0.06  Score=59.13  Aligned_cols=165  Identities=8%  Similarity=-0.003  Sum_probs=93.6

Q ss_pred             eCCCCCEEE-EEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---------------------
Q 004290           58 WNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---------------------  115 (763)
Q Consensus        58 fsp~g~~La-sgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---------------------  115 (763)
                      ++|||+.|. +.-..+.+.+.|.++.+...++..+  +...-++++|+  +.++++.+.                     
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spd--Gk~afvTsyNsE~G~tl~em~a~e~d~~vv  275 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYD--GKYAFSTCYNSEEGVTLAEMMAAERDWVVV  275 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeC--CCcccceECCC--CCEEEEeccCcccCcceeeeccccCceEEE
Confidence            345666553 2333466778888887776666322  24456777777  566655541                     


Q ss_pred             -------------------CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004290          116 -------------------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (763)
Q Consensus       116 -------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd  176 (763)
                                         ++.|.+.|..+.....     ...+..+ .-......|+++|++..+++++..+.+|.|.|
T Consensus       276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~-----~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVID  349 (635)
T PRK02888        276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAG-----SALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVID  349 (635)
T ss_pred             EchHHHHHhhhCCCEEEECCCEEEEEECCccccCC-----cceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence                               2335555544310000     0112222 24556788999996655666666799999999


Q ss_pred             CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                      +.+.+....   ........+.          ...+- .......+|+++ ++.+.+-.-|..|..||+..
T Consensus       350 v~k~k~~~~---~~~~~~~~vv----------aevev-GlGPLHTaFDg~-G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        350 VRKLDDLFD---GKIKPRDAVV----------AEPEL-GLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             Chhhhhhhh---ccCCccceEE----------Eeecc-CCCcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence            988653200   0000000000          00011 122345678886 67888888999999999876

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.45  E-value=1.3  Score=47.86  Aligned_cols=65  Identities=25%  Similarity=0.334  Sum_probs=46.3

Q ss_pred             EEeCCCCCEEEEEeCC----------C-cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290           56 ISWNSKGSLLISGSDD----------T-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (763)
Q Consensus        56 l~fsp~g~~Lasgs~D----------~-~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~  124 (763)
                      ++.+|.|..+|....+          . .|.||+.. |+.+.++.-.+ +.|.++.|..+   ..|+....||.++++|+
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~~---e~LvvV~~dG~v~vy~~  108 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS-GRIVGMGWTDD---EELVVVQSDGTVRVYDL  108 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC-CCEEEEEECCC---CeEEEEEcCCEEEEEeC
Confidence            4556666666655443          2 48899865 56666663333 89999999886   56667778999999998


Q ss_pred             C
Q 004290          125 S  125 (763)
Q Consensus       125 ~  125 (763)
                      .
T Consensus       109 ~  109 (410)
T PF04841_consen  109 F  109 (410)
T ss_pred             C
Confidence            6

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.43  E-value=0.51  Score=49.00  Aligned_cols=173  Identities=15%  Similarity=0.206  Sum_probs=78.1

Q ss_pred             EeCCCCCEEEEEeC-C--CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290           57 SWNSKGSLLISGSD-D--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  133 (763)
Q Consensus        57 ~fsp~g~~Lasgs~-D--~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~  133 (763)
                      +|.+||+.|+-++. |  ..+.+.|+.+++..+.. .+-........++|+  ++.++-......|+-.|+.+.+.    
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g~~~~g~~~s~~--~~~~~Yv~~~~~l~~vdL~T~e~----  114 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPGDNTFGGFLSPD--DRALYYVKNGRSLRRVDLDTLEE----  114 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TT--SSEEEEEETTTEEEEEETTT--E----
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCCCCccceEEecC--CCeEEEEECCCeEEEEECCcCcE----
Confidence            46678976665544 4  45677789998876654 332233446677888  57776666667888889887431    


Q ss_pred             CCCCCCceeeecccCceeEEEEec-CCCCEEEEEeCCCcEEEEECCCCC-CCCCCCCCCcccceEEEecCCCceeeccCC
Q 004290          134 DNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGS-SCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (763)
Q Consensus       134 ~~~~~~~~~~~~h~~~v~~l~~sp-~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (763)
                            ...+......+-...|.. .+...++-.-....  -|..-... ...........|....+++..+....+.. 
T Consensus       115 ------~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~--d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-  185 (386)
T PF14583_consen  115 ------RVVYEVPDDWKGYGTWVANSDCTKLVGIEISRE--DWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-  185 (386)
T ss_dssp             ------EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG--G-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-
T ss_pred             ------EEEEECCcccccccceeeCCCccEEEEEEEeeh--hccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-
Confidence                  122333344444455542 23333322211000  00000000 00000111223555666777666555443 


Q ss_pred             CCCccceEEEEEeCCCCcEEEEEe---CCCc-EEEEeCCC
Q 004290          212 PKQTLSLKSCDISSTRPHLLLVGG---SDAF-ARLYDRRM  247 (763)
Q Consensus       212 ~~~~~~v~~i~~~p~~~~~l~sgs---~Dg~-i~iwd~~~  247 (763)
                        ....+.-+.|+|.++.+|+-|-   .+.. -|||-+++
T Consensus       186 --~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~  223 (386)
T PF14583_consen  186 --DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT  223 (386)
T ss_dssp             --ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred             --cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence              2456778999998876666543   2332 36776653

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.43  E-value=0.89  Score=48.60  Aligned_cols=204  Identities=16%  Similarity=0.161  Sum_probs=127.3

Q ss_pred             eEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---CCcEEEEECCCCC
Q 004290           53 VNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFS  128 (763)
Q Consensus        53 V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---dg~I~iwd~~~~~  128 (763)
                      -..+++++.+. ..++...++.|.+.|..+.+.......+.  ....+++.|+  +..+..+..   ++++.+.|..+..
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~--~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPD--GKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCC--CCEEEEEecccCCceEEEEeCCCCe
Confidence            34677888887 55556667899999988888887774444  6788999999  445544443   6788888877632


Q ss_pred             CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (763)
                                .......-..+ ..+++.|++...+++-..++.|.+.|........  ...             ..    
T Consensus       152 ----------~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~-------------~~----  201 (381)
T COG3391         152 ----------VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSV-------------GS----  201 (381)
T ss_pred             ----------EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--ccc-------------cc----
Confidence                      23333222233 8899999655456566678999999966654210  000             00    


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCC--CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004290          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSD--AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (763)
Q Consensus       209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~  286 (763)
                        ..........+.++|++.+..++-..+  +.+...|..++.......                   ..... ....+.
T Consensus       202 --~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~-------------------~~~~~-~~~~v~  259 (381)
T COG3391         202 --LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL-------------------PVGSG-APRGVA  259 (381)
T ss_pred             --ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc-------------------ccccC-CCCcee
Confidence              001112335678899743344443333  588888888765332100                   00011 145578


Q ss_pred             EcCCCCEEEEEeC-CCeEEEEECCCCC
Q 004290          287 FSPNGEEVLLSYS-GEHVYLMDVNHAG  312 (763)
Q Consensus       287 ~spdg~~l~~~s~-d~~i~iwd~~~~~  312 (763)
                      ++|+|.++.+... .+.+.+-|..+..
T Consensus       260 ~~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         260 VDPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             ECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence            9999999988865 5889999888843

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.42  E-value=0.71  Score=44.34  Aligned_cols=61  Identities=10%  Similarity=0.135  Sum_probs=46.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEE-EEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC-TKFVPETSDELVVSGAGDAEVRLFNLSR  126 (763)
Q Consensus        62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~-v~~~p~~~~~~l~s~s~dg~I~iwd~~~  126 (763)
                      |++++.|...|.+++.+..+|.....+...  +.|.+ ....++  +.++..++.|++.+..|..+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--~~vk~~a~~d~~--~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--ETVKVRAQCDFD--GGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeeh--hhhccceEEcCC--CceEEEecCCCcEEEecccc
Confidence            667899999999999999999877776322  22222 223455  68999999999999999886

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.36  E-value=0.13  Score=54.50  Aligned_cols=183  Identities=15%  Similarity=0.165  Sum_probs=95.3

Q ss_pred             CCCCCEEEEE---------eCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           59 NSKGSLLISG---------SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        59 sp~g~~Lasg---------s~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      |||+++++..         +..+.+.|+|+++++..... . ....+....|+|+  |+.++... ++.|.+++...+..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~-~-~~~~~~~~~~sP~--g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT-P-PPPKLQDAKWSPD--GKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---EETTBSEEEE-SS--STEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc-C-CccccccceeecC--CCeeEEEe-cCceEEEECCCCCe
Confidence            6888877763         22467899999997655433 2 2567889999999  78888876 67899998865422


Q ss_pred             CCCCCCCCCCceeeecc---------cCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC------------CCCCC
Q 004290          130 RGLDDNAITPSALYQCH---------TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC------------PPAGS  188 (763)
Q Consensus       130 ~~~~~~~~~~~~~~~~h---------~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~------------~~~~~  188 (763)
                      ..+....  .-..+.|-         -+.-..+-|+|++..+++.--.+..|+.+.+-.....            +..+.
T Consensus        76 ~~lT~dg--~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~  153 (353)
T PF00930_consen   76 TQLTTDG--EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD  153 (353)
T ss_dssp             EESES----TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred             EEecccc--ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence            1110000  00001110         1233568899955444444445555655543322111            11122


Q ss_pred             CCcccceEEEecCCCceeeccCC---CCCccceEEEEEeCCCCcEEEEE--eCC---CcEEEEeCCCCC
Q 004290          189 SHQECRNILLDLRCGAKRSLADP---PKQTLSLKSCDISSTRPHLLLVG--GSD---AFARLYDRRMLP  249 (763)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~i~~~p~~~~~l~sg--s~D---g~i~iwd~~~~~  249 (763)
                      ........++++..+....+...   ......+..+.|.++ +..|+..  ..+   -.+.++|..++.
T Consensus       154 ~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d-~~~l~~~~~nR~q~~~~l~~~d~~tg~  221 (353)
T PF00930_consen  154 PNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPD-GKRLWVQWLNRDQNRLDLVLCDASTGE  221 (353)
T ss_dssp             ---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEET-TEEEEEEEEETTSTEEEEEEEEECTTT
T ss_pred             cCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCC-CcEEEEEEcccCCCEEEEEEEECCCCc
Confidence            22223344566666654433322   234567889999997 4534333  222   236677776654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.26  E-value=2.6  Score=46.83  Aligned_cols=64  Identities=9%  Similarity=0.084  Sum_probs=42.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCC-----CceE--EEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHS-----ANVF--CTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (763)
Q Consensus        62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~-----~~V~--~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~  128 (763)
                      +..+..++.++.|.-.|..+|+.+-.+.....     ..+.  .+... +  +..++.++.++.|..+|.++++
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~--~~~V~v~~~~g~v~AlD~~TG~  131 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-D--PRKVFFGTFDGRLVALDAETGK  131 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-c--CCeEEEecCCCeEEEEECCCCC
Confidence            45567778889999999999988877632221     0110  11111 1  2578888889999999998754

The alignment model contains an 8-bladed beta-propeller.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.17  E-value=0.23  Score=53.56  Aligned_cols=180  Identities=14%  Similarity=0.119  Sum_probs=99.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEccCCCC------ceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004290           64 LLISGSDDTHINVWSYSSRKLLHSIETGHSA------NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI  137 (763)
Q Consensus        64 ~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~------~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~  137 (763)
                      .++.++.++.+...|..+|+.+.........      ....+.-+|--.+..++.++.++.+..+|..+++.        
T Consensus       207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~--------  278 (394)
T PRK11138        207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI--------  278 (394)
T ss_pred             EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE--------
Confidence            4566777888888999888766554211100      00111112210135677777899999999987532        


Q ss_pred             CCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccc
Q 004290          138 TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS  217 (763)
Q Consensus       138 ~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (763)
                        +....  ......+..   .+..++.++.+|.+..+|..+++.              +|......          ...
T Consensus       279 --~W~~~--~~~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~--------------~W~~~~~~----------~~~  327 (394)
T PRK11138        279 --VWKRE--YGSVNDFAV---DGGRIYLVDQNDRVYALDTRGGVE--------------LWSQSDLL----------HRL  327 (394)
T ss_pred             --EEeec--CCCccCcEE---ECCEEEEEcCCCeEEEEECCCCcE--------------EEcccccC----------CCc
Confidence              11111  111122233   234566778899999999988752              22211000          001


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee-EEEEcCCCCEEEE
Q 004290          218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT-HVTFSPNGEEVLL  296 (763)
Q Consensus       218 v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~-~v~~spdg~~l~~  296 (763)
                      ..+..+.   +.++++++.||.|.+.|..+++.+......                   ..  .+. ...+  .+..|++
T Consensus       328 ~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~-------------------~~--~~~s~P~~--~~~~l~v  381 (394)
T PRK11138        328 LTAPVLY---NGYLVVGDSEGYLHWINREDGRFVAQQKVD-------------------SS--GFLSEPVV--ADDKLLI  381 (394)
T ss_pred             ccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEcC-------------------CC--cceeCCEE--ECCEEEE
Confidence            1111222   347889999999999999998754332100                   00  011 1112  2447899


Q ss_pred             EeCCCeEEEEEC
Q 004290          297 SYSGEHVYLMDV  308 (763)
Q Consensus       297 ~s~d~~i~iwd~  308 (763)
                      ++.||.|+.++.
T Consensus       382 ~t~~G~l~~~~~  393 (394)
T PRK11138        382 QARDGTVYAITR  393 (394)
T ss_pred             EeCCceEEEEeC
Confidence            999999998864

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.07  E-value=0.96  Score=46.13  Aligned_cols=58  Identities=9%  Similarity=0.122  Sum_probs=44.0

Q ss_pred             cEEEEEcCcCcEEEEEecCCcceEEEEeeCCC-CeEEEE-eCCCcEEEEcCCCCCCccccC
Q 004290          650 RWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFD-CVVATS-GIDNTIKIWTPSASVPSIVSG  708 (763)
Q Consensus       650 ~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~-~~laS~-s~D~~IrvW~~~~~~~~~~~~  708 (763)
                      -|-++|++|++.++++.. ..++.+++.+.+. ++|.+. ..++.+.+||..+++.+...+
T Consensus       270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            366778899999999975 2458899999887 477654 568999999999999887764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.04  E-value=1.1  Score=44.10  Aligned_cols=183  Identities=16%  Similarity=0.119  Sum_probs=91.8

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecc-cCceeEEEEecCCCCEEEEEeC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASE  168 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~s~s~  168 (763)
                      .+-...+..++|+|+. +.++++....+.|...+...           +.++.+.-. .+..-.|++.. ++.++++--.
T Consensus        18 ~g~~~e~SGLTy~pd~-~tLfaV~d~~~~i~els~~G-----------~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er   84 (248)
T PF06977_consen   18 PGILDELSGLTYNPDT-GTLFAVQDEPGEIYELSLDG-----------KVLRRIPLDGFGDYEGITYLG-NGRYVLSEER   84 (248)
T ss_dssp             TT--S-EEEEEEETTT-TEEEEEETTTTEEEEEETT-------------EEEEEE-SS-SSEEEEEE-S-TTEEEEEETT
T ss_pred             CCccCCccccEEcCCC-CeEEEEECCCCEEEEEcCCC-----------CEEEEEeCCCCCCceeEEEEC-CCEEEEEEcC
Confidence            4556679999999985 67888888888888887652           223433211 35577888865 5456655556


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC
Q 004290          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (763)
Q Consensus       169 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~  248 (763)
                      ++.+.++++........        ...+.      ...+.....+...+-.++|+|. .+.|+++-...-.+||.++..
T Consensus        85 ~~~L~~~~~~~~~~~~~--------~~~~~------~~~l~~~~~~N~G~EGla~D~~-~~~L~v~kE~~P~~l~~~~~~  149 (248)
T PF06977_consen   85 DQRLYIFTIDDDTTSLD--------RADVQ------KISLGFPNKGNKGFEGLAYDPK-TNRLFVAKERKPKRLYEVNGF  149 (248)
T ss_dssp             TTEEEEEEE----TT----------EEEEE------EEE---S---SS--EEEEEETT-TTEEEEEEESSSEEEEEEEST
T ss_pred             CCcEEEEEEeccccccc--------hhhce------EEecccccCCCcceEEEEEcCC-CCEEEEEeCCCChhhEEEccc
Confidence            89999999855432100        00000      0011122234556889999997 456667777777777777642


Q ss_pred             CCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCeEEEEECCC
Q 004290          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg-~~l~~~s~d~~i~iwd~~~  310 (763)
                      ..-          ..........+......-..+.+++++|.. .+++.+..+..|..+|...
T Consensus       150 ~~~----------~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G  202 (248)
T PF06977_consen  150 PGG----------FDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG  202 (248)
T ss_dssp             T-S----------S--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT-
T ss_pred             cCc----------cceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCC
Confidence            100          000000000000000111138889999965 4555555688999998433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.04  E-value=0.052  Score=59.03  Aligned_cols=122  Identities=18%  Similarity=0.186  Sum_probs=84.4

Q ss_pred             CceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC
Q 004290          148 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (763)
Q Consensus       148 ~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  227 (763)
                      ..|.--++.. ...+++.|+.-|.+++|+-..++.....                        ..+....+..+..++. 
T Consensus        34 ~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~------------------------~~~~~~~~~~~~vs~~-   87 (726)
T KOG3621|consen   34 ARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLK------------------------NEGATGITCVRSVSSV-   87 (726)
T ss_pred             ceEEEEEeec-CCceEEEecccceEEEEecCchhhhccc------------------------ccCccceEEEEEecch-
Confidence            3344444544 5689999999999999997776532111                        1112345566778886 


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 004290          228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD  307 (763)
Q Consensus       228 ~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd  307 (763)
                      .+++|.|+..|.|.++-+....+-           ...++.+.+-   .|.. .||+++|++++..|++|...|+|.+-.
T Consensus        88 e~lvAagt~~g~V~v~ql~~~~p~-----------~~~~~t~~d~---~~~~-rVTal~Ws~~~~k~ysGD~~Gkv~~~~  152 (726)
T KOG3621|consen   88 EYLVAAGTASGRVSVFQLNKELPR-----------DLDYVTPCDK---SHKC-RVTALEWSKNGMKLYSGDSQGKVVLTE  152 (726)
T ss_pred             hHhhhhhcCCceEEeehhhccCCC-----------cceeeccccc---cCCc-eEEEEEecccccEEeecCCCceEEEEE
Confidence            578899999999999988764321           1222222221   1333 699999999999999999999999998


Q ss_pred             CCC
Q 004290          308 VNH  310 (763)
Q Consensus       308 ~~~  310 (763)
                      +++
T Consensus       153 L~s  155 (726)
T KOG3621|consen  153 LDS  155 (726)
T ss_pred             ech
Confidence            887

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.04  E-value=0.34  Score=52.14  Aligned_cols=124  Identities=13%  Similarity=0.148  Sum_probs=71.8

Q ss_pred             eeccccCceEEEEeCCCCCEEEEEe---CC-CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           45 ELEGHQGCVNAISWNSKGSLLISGS---DD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        45 ~l~gH~~~V~~l~fsp~g~~Lasgs---~D-~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      .+..-...+..-+|+|++..++-.+   .. ..+.++|+.+++......  ..+.-..-+|+|++ ..++++...||...
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG-~~l~f~~~rdg~~~  263 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDG-SKLAFSSSRDGSPD  263 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCC-CEEEEEECCCCCcc
Confidence            3333455677788999998776442   22 359999999887554441  23344567899994 44555666677755


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEE--EECCCC
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ--HDFRQG  180 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~i--wd~~~~  180 (763)
                      ||-+......         ...+..-.+.-..=.|+|++..++++.+..|.-.|  .|+...
T Consensus       264 iy~~dl~~~~---------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         264 IYLMDLDGKN---------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             EEEEcCCCCc---------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence            5544432211         22233222222345789966666666666665444  454444

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.94  E-value=0.28  Score=51.19  Aligned_cols=186  Identities=14%  Similarity=0.167  Sum_probs=109.0

Q ss_pred             CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC-----CCcEEEEEeC----------CCcEEEEECCCCCCCCCCCCC
Q 004290           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPET-----SDELVVSGAG----------DAEVRLFNLSRFSGRGLDDNA  136 (763)
Q Consensus        72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~-----~~~~l~s~s~----------dg~I~iwd~~~~~~~~~~~~~  136 (763)
                      ..|+|.|..+.+.+..+.-.....+.+++...-.     ...+|+.|..          .|.|.++++......   ...
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~---~~~   78 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN---NFK   78 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------E
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccccc---ceE
Confidence            3688999888887766643445566666555411     1367777653          288999999863000   000


Q ss_pred             CCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCcc
Q 004290          137 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL  216 (763)
Q Consensus       137 ~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (763)
                      .+.+.. ....++|++|+-.  ++.++++.  .+.|.+|++...+..         .....++              ...
T Consensus        79 l~~i~~-~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l---------~~~~~~~--------------~~~  130 (321)
T PF03178_consen   79 LKLIHS-TEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTL---------LKKAFYD--------------SPF  130 (321)
T ss_dssp             EEEEEE-EEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSE---------EEEEEE---------------BSS
T ss_pred             EEEEEE-EeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccc---------hhhheec--------------ceE
Confidence            122222 2457899999776  34444333  489999999887511         0111111              112


Q ss_pred             ceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC-CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEE
Q 004290          217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL  295 (763)
Q Consensus       217 ~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~  295 (763)
                      .+.++....   +++++|.....+.++..+... .+..+.                   ......+++++.|-+++..++
T Consensus       131 ~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~~~l~~va-------------------~d~~~~~v~~~~~l~d~~~~i  188 (321)
T PF03178_consen  131 YITSLSVFK---NYILVGDAMKSVSLLRYDEENNKLILVA-------------------RDYQPRWVTAAEFLVDEDTII  188 (321)
T ss_dssp             SEEEEEEET---TEEEEEESSSSEEEEEEETTTE-EEEEE-------------------EESS-BEEEEEEEE-SSSEEE
T ss_pred             EEEEEeccc---cEEEEEEcccCEEEEEEEccCCEEEEEE-------------------ecCCCccEEEEEEecCCcEEE
Confidence            455666553   599999998888888554311 111110                   001122589999997778899


Q ss_pred             EEeCCCeEEEEECCC
Q 004290          296 LSYSGEHVYLMDVNH  310 (763)
Q Consensus       296 ~~s~d~~i~iwd~~~  310 (763)
                      ++..+|.+.++....
T Consensus       189 ~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  189 VGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEETTSEEEEEEE-S
T ss_pred             EEcCCCeEEEEEECC
Confidence            999999999998874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.93  E-value=0.27  Score=56.21  Aligned_cols=199  Identities=13%  Similarity=0.145  Sum_probs=111.9

Q ss_pred             cchhhhhccccceeeccccCc-eEEEEeCCC-------CCEEEEEeCCCcEEEEeCCCC--eEEEEEc--cCCCCceEEE
Q 004290           32 MHSSLVRRLSQERELEGHQGC-VNAISWNSK-------GSLLISGSDDTHINVWSYSSR--KLLHSIE--TGHSANVFCT   99 (763)
Q Consensus        32 ~~~~~~~~~~~~~~l~gH~~~-V~~l~fsp~-------g~~Lasgs~D~~v~iWd~~~~--~~~~~~~--~~h~~~V~~v   99 (763)
                      ++.-.+.+.+.+.+++-|... |..++  |+       ..-.+.|-.+..|..||.+-.  +++..-.  ........|+
T Consensus       506 ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~  583 (794)
T PF08553_consen  506 LYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF  583 (794)
T ss_pred             eEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence            344448888999999988754 55544  43       234566777889999998743  2332110  1233455666


Q ss_pred             EEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (763)
Q Consensus       100 ~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~  179 (763)
                      +-..+   .+||.|+.+|.||+||--. .         +....+.+...+|.+|..+.+ |++++..+ +..+.+++..-
T Consensus       584 aTt~~---G~iavgs~~G~IRLyd~~g-~---------~AKT~lp~lG~pI~~iDvt~D-GkwilaTc-~tyLlLi~t~~  648 (794)
T PF08553_consen  584 ATTED---GYIAVGSNKGDIRLYDRLG-K---------RAKTALPGLGDPIIGIDVTAD-GKWILATC-KTYLLLIDTLI  648 (794)
T ss_pred             EecCC---ceEEEEeCCCcEEeecccc-h---------hhhhcCCCCCCCeeEEEecCC-CcEEEEee-cceEEEEEEee
Confidence            66655   5899999999999999432 1         223445677899999999994 55554443 46788888642


Q ss_pred             --CCCCCCCC---C--CCcccceEEEecCCCceeeccCCCCCccceEEEEEeC--CCCcEEEEEeCCCcEEEEeCCC
Q 004290          180 --GSSCPPAG---S--SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       180 --~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p--~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                        ++.....+   .  ...........++..+...+....+.....+...|+-  +.....++.+....+.+|+++.
T Consensus       649 ~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~k  725 (794)
T PF08553_consen  649 KDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKK  725 (794)
T ss_pred             ecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHH
Confidence              21111110   0  0001111222222222111111112233444556653  1123455556678999999975

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.89  E-value=1.7  Score=47.19  Aligned_cols=117  Identities=13%  Similarity=0.120  Sum_probs=68.8

Q ss_pred             ceEEEEeCCCCCEEEEE-eCC----CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC---------
Q 004290           52 CVNAISWNSKGSLLISG-SDD----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA---------  117 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasg-s~D----~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg---------  117 (763)
                      .+..+++||+|++||-+ +..    .+|+++|+++|+.+......  .....+.|.++  ++.|+....+.         
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d--~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDD--GKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTT--SSEEEEEECSTTTSS-CCGC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCC--CCEEEEEEeCcccccccCCC
Confidence            34468899999998854 333    45999999999876543111  11223999999  56665554433         


Q ss_pred             --cEEEEECCCCCCCCCCCCCCCCceeeecccCc--eeEEEEecCCCCEEEEEeCCC---cEEEEECCCC
Q 004290          118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR--VKKLAVEVGNPHVVWSASEDG---TLRQHDFRQG  180 (763)
Q Consensus       118 --~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~s~s~dg---~i~iwd~~~~  180 (763)
                        .|+.|.+.+....        -...+......  ...+..++++..+++......   .+.+.|+...
T Consensus       201 ~~~v~~~~~gt~~~~--------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSE--------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             CEEEEEEETTS-GGG---------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             CcEEEEEECCCChHh--------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence              3778887764321        12333333322  557788885544454454433   4777788774

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.89  E-value=3.1  Score=44.38  Aligned_cols=87  Identities=14%  Similarity=0.170  Sum_probs=61.5

Q ss_pred             EEeeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcc----eEEEEeeCC-------------
Q 004290          618 RYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV----VNCVQCHPF-------------  680 (763)
Q Consensus       618 ~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~----V~~v~~sp~-------------  680 (763)
                      .+......+..|.    .+|++++.|....=|+|.++|+.++..++..+|=.+.    |....-...             
T Consensus       302 ~l~D~~R~~~~i~----~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~  377 (415)
T PF14655_consen  302 GLPDSKREGESIC----LSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR  377 (415)
T ss_pred             eeccCCceEEEEE----ECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCc
Confidence            4444444455555    8999999999877899999999999999999985442    211111111             


Q ss_pred             -CC-eEEEEeCCCcEEEEcCCCCCCccccC
Q 004290          681 -DC-VVATSGIDNTIKIWTPSASVPSIVSG  708 (763)
Q Consensus       681 -~~-~laS~s~D~~IrvW~~~~~~~~~~~~  708 (763)
                       .. +++=+-.-|.|-||.++.++.+..+.
T Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  378 FALFLVIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             ceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence             01 44456678999999999999887764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.03  Score=59.99  Aligned_cols=76  Identities=18%  Similarity=0.259  Sum_probs=64.9

Q ss_pred             CceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCcee-EEEEecCCCCEEEEEeCCCcE
Q 004290           94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGTL  172 (763)
Q Consensus        94 ~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~sp~~~~~l~s~s~dg~i  172 (763)
                      ..|.-+.|+|.  -.++|.+..+|.|-+..++-           .-+.++.-|...++ +++|.| +|++++.|-.||+|
T Consensus        21 ~~i~~~ewnP~--~dLiA~~t~~gelli~R~n~-----------qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I   86 (665)
T KOG4640|consen   21 INIKRIEWNPK--MDLIATRTEKGELLIHRLNW-----------QRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTI   86 (665)
T ss_pred             cceEEEEEcCc--cchhheeccCCcEEEEEecc-----------ceeEeccCCCCccceeeeecC-CCCEEEEEecCCeE
Confidence            45778999999  68999999999999998883           33777776777777 999999 57999999999999


Q ss_pred             EEEECCCCCCC
Q 004290          173 RQHDFRQGSSC  183 (763)
Q Consensus       173 ~iwd~~~~~~~  183 (763)
                      ++.|+.++..+
T Consensus        87 ~L~Dve~~~~l   97 (665)
T KOG4640|consen   87 RLHDVEKGGRL   97 (665)
T ss_pred             EEEEccCCCce
Confidence            99999998643

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.72  E-value=1.2  Score=46.41  Aligned_cols=155  Identities=13%  Similarity=0.158  Sum_probs=91.2

Q ss_pred             eEEEEeCCC----CCEEEEEeC----------CCcEEEEeCCCC-----eEEEEEccCCCCceEEEEEeeCCCCcEEEEE
Q 004290           53 VNAISWNSK----GSLLISGSD----------DTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSG  113 (763)
Q Consensus        53 V~~l~fsp~----g~~Lasgs~----------D~~v~iWd~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~  113 (763)
                      +..+.|..+    ..+|+.|..          .|.|.++++...     +..........++|++++-..   +. |+.+
T Consensus        29 ~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~---~~-lv~~  104 (321)
T PF03178_consen   29 LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN---GR-LVVA  104 (321)
T ss_dssp             EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET---TE-EEEE
T ss_pred             EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC---CE-EEEe
Confidence            344445443    467877743          288999999884     222222234578899988773   34 4444


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004290          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (763)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  193 (763)
                      . .+.|.+|++...+  .     ......+. ....+.++...   +++++.|.....+.++..+.....          
T Consensus       105 ~-g~~l~v~~l~~~~--~-----l~~~~~~~-~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~~----------  162 (321)
T PF03178_consen  105 V-GNKLYVYDLDNSK--T-----LLKKAFYD-SPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENNK----------  162 (321)
T ss_dssp             E-TTEEEEEEEETTS--S-----EEEEEEE--BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE-----------
T ss_pred             e-cCEEEEEEccCcc--c-----chhhheec-ceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCCE----------
Confidence            4 4889999999743  0     01112222 22356666654   358888888888888754432100          


Q ss_pred             ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004290          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (763)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~  246 (763)
                       ..+..           .......++++.|-+++ +.++++..+|.+.++...
T Consensus       163 -l~~va-----------~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  163 -LILVA-----------RDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -EEEEE-----------EESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-
T ss_pred             -EEEEE-----------ecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEEC
Confidence             00100           01124568899998764 699999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.67  E-value=0.035  Score=38.53  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=29.8

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL   84 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~   84 (763)
                      ...|.+++|+|...+||.|..||.|.|+.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356999999999999999999999999998 4443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.63  E-value=0.56  Score=50.47  Aligned_cols=200  Identities=14%  Similarity=0.163  Sum_probs=107.9

Q ss_pred             cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe---CC-CcEEEEECCCCCCCCCCCCCCCCceeeecccC
Q 004290           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA---GD-AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (763)
Q Consensus        73 ~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s---~d-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (763)
                      .+.+-|.+ +.....+ ..-...+..-+|+|+  +..++...   .. ..+.++|+..+....        +..+.++  
T Consensus       174 ~l~~~D~d-g~~~~~l-~~~~~~~~~p~ws~~--~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--------i~~~~g~--  239 (425)
T COG0823         174 ELALGDYD-GYNQQKL-TDSGSLILTPAWSPD--GKKLAYVSFELGGCPRIYYLDLNTGKRPV--------ILNFNGN--  239 (425)
T ss_pred             eEEEEccC-CcceeEe-cccCcceeccccCcC--CCceEEEEEecCCCceEEEEeccCCccce--------eeccCCc--
Confidence            34444544 4444444 334456777889998  45544432   22 358999999754322        3333333  


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcE--EEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004290          149 RVKKLAVEVGNPHVVWSASEDGTL--RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (763)
Q Consensus       149 ~v~~l~~sp~~~~~l~s~s~dg~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~  226 (763)
                       -..-+|+|++..++++...||..  ++.|+......                       .+....+.   -..=.|+|+
T Consensus       240 -~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-----------------------~Lt~~~gi---~~~Ps~spd  292 (425)
T COG0823         240 -NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-----------------------RLTNGFGI---NTSPSWSPD  292 (425)
T ss_pred             -cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-----------------------ecccCCcc---ccCccCCCC
Confidence             34458999887778888888864  45566665421                       01111111   114468998


Q ss_pred             CCcEEEEEeCCCcEEEE--eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCe-
Q 004290          227 RPHLLLVGGSDAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEH-  302 (763)
Q Consensus       227 ~~~~l~sgs~Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~-  302 (763)
                      +..+.++.+..|.-.||  |+...+..              ..     ...+..   -..-.|+|||++|+..+. +|. 
T Consensus       293 G~~ivf~Sdr~G~p~I~~~~~~g~~~~--------------ri-----T~~~~~---~~~p~~SpdG~~i~~~~~~~g~~  350 (425)
T COG0823         293 GSKIVFTSDRGGRPQIYLYDLEGSQVT--------------RL-----TFSGGG---NSNPVWSPDGDKIVFESSSGGQW  350 (425)
T ss_pred             CCEEEEEeCCCCCcceEEECCCCCcee--------------Ee-----eccCCC---CcCccCCCCCCEEEEEeccCCce
Confidence            65556666666765555  44433210              00     001111   115568999999888775 344 


Q ss_pred             -EEEEECCCCCccceEeecCCCCeeeeeccCCCCc
Q 004290          303 -VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL  336 (763)
Q Consensus       303 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  336 (763)
                       |.+.++.++.. ......+.....-.+.|....+
T Consensus       351 ~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i  384 (425)
T COG0823         351 DIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMI  384 (425)
T ss_pred             eeEEeccCCCCc-EEEccccccCCCCCcCCCCceE
Confidence             77777766543 3333333334444455544444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.35  E-value=0.15  Score=50.19  Aligned_cols=107  Identities=24%  Similarity=0.216  Sum_probs=88.7

Q ss_pred             CchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCC
Q 004290          359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS  438 (763)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~  438 (763)
                      +......|+..++.....+. |-.||..|+.+|...+.+      .++|.+|+.++++-+-   ...|+.||..++.+||
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~-Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~---~~~AVkDce~Al~iDp  146 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKD-YQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGE---YEDAVKDCESALSIDP  146 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcc---hHHHHHHHHHHHhcCh
Confidence            34456667777777766666 779999999999877665      5689999999998553   3468999999999999


Q ss_pred             CCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCCh
Q 004290          439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS  475 (763)
Q Consensus       439 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~  475 (763)
                      ...++..++..++..+++...+.........+.|+..
T Consensus       147 ~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  147 HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence            9999999999999999999999888777788888865

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.30  E-value=0.14  Score=47.10  Aligned_cols=120  Identities=28%  Similarity=0.289  Sum_probs=91.6

Q ss_pred             hhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhc-cccccchhhhHHhHHHHhcCCCCCc
Q 004290          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLK-RKWKNDAQMAIRDCYNARRIDSSSF  441 (763)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~~~~a~~d~~~~~~~~~~~~  441 (763)
                      ...++.-++..+..|. |-.|..-|..+|..++.... .++..||.||+.+.++ +.|.    .++.+|..++.+.|...
T Consensus        95 ad~lK~EGN~~F~ngd-yeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e----~aI~dcsKaiel~pty~  168 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGD-YEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWE----SAIEDCSKAIELNPTYE  168 (271)
T ss_pred             HHHHHHHHHHhhhccc-HHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHH----HHHHHHHhhHhcCchhH
Confidence            3445556666666665 55677788889988876533 6678899999999997 4565    57889999999999999


Q ss_pred             hhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHHH
Q 004290          442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI  488 (763)
Q Consensus       442 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  488 (763)
                      ++..+...+...+..+.++..-.+......|.......++..+...+
T Consensus       169 kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i  215 (271)
T KOG4234|consen  169 KALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI  215 (271)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence            99998888888888888888777777788888776666665554443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.29  E-value=5  Score=42.87  Aligned_cols=229  Identities=14%  Similarity=0.151  Sum_probs=130.4

Q ss_pred             ceEEEEeCCCCCEEE-EEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290           52 CVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (763)
Q Consensus        52 ~V~~l~fsp~g~~La-sgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~  130 (763)
                      ....+...+++..+. +-.....+.+.+.......... ..-......+++++.. .+.++....+..|.+.|.....  
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~-~~g~~~p~~i~v~~~~-~~vyv~~~~~~~v~vid~~~~~--  107 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSL-SVGGVYPAGVAVNPAG-NKVYVTTGDSNTVSVIDTATNT--  107 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeec-cCCCccccceeeCCCC-CeEEEecCCCCeEEEEcCcccc--
Confidence            455677888885433 3323235555555522222222 1111344677888884 4466666667999999966521  


Q ss_pred             CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe--CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (763)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (763)
                              ...... -......++++|+++.+.++-.  .++++.+.|-.+.+...             . ..       
T Consensus       108 --------~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~-------------~-~~-------  157 (381)
T COG3391         108 --------VLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA-------------T-IP-------  157 (381)
T ss_pred             --------eeeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE-------------E-Ee-------
Confidence                    122221 2226778999996655555555  36888888877665220             0 01       


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc
Q 004290          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (763)
Q Consensus       209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s  288 (763)
                          ....+ ..++++|++...+++-..++.|.+.|........ - ....            .  .+... .-..+.++
T Consensus       158 ----vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~-~~~~------------~--~~~~~-~P~~i~v~  215 (381)
T COG3391         158 ----VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G-SVGS------------L--VGVGT-GPAGIAVD  215 (381)
T ss_pred             ----cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c-cccc------------c--cccCC-CCceEEEC
Confidence                11122 7899999854455555688999999977654321 0 0000            0  00001 24568899


Q ss_pred             CCCCEEEEEeCC---CeEEEEECCCCCccceEeecCC-CCeeeeeccCCCCc
Q 004290          289 PNGEEVLLSYSG---EHVYLMDVNHAGGRAMRYTVGD-ASKIMSFTPTLNGL  336 (763)
Q Consensus       289 pdg~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~  336 (763)
                      |+|.++.+.-..   +.+...|..++.........+. ....+...|+....
T Consensus       216 ~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~  267 (381)
T COG3391         216 PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAA  267 (381)
T ss_pred             CCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEE
Confidence            999987776654   5899999888654333222222 45556677765544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.10  E-value=0.8  Score=49.54  Aligned_cols=147  Identities=11%  Similarity=0.103  Sum_probs=77.1

Q ss_pred             eeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE-
Q 004290           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF-  122 (763)
Q Consensus        44 ~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw-  122 (763)
                      +.+....-....+.++|+|++++.+ .||.-.|+.....+... +     +.-....|.+.   ..+|+-...++|.|+ 
T Consensus        26 k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-~-----G~g~~~vw~~~---n~yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   26 KELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-F-----GSGLSFVWSSR---NRYAVLESSSTIKIYK   95 (443)
T ss_dssp             EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-E-----EE-SEEEE-TS---SEEEEE-TTS-EEEEE
T ss_pred             ccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-c-----CceeEEEEecC---ccEEEEECCCeEEEEE
Confidence            3444455568899999999999885 45777788754444322 2     33456788885   457777778999996 


Q ss_pred             ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (763)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (763)
                      ++...           ....+. ....+..|-  +  |.+|...+. +.|.+||+.+++.+              .    
T Consensus        96 n~~~~-----------~~k~i~-~~~~~~~If--~--G~LL~~~~~-~~i~~yDw~~~~~i--------------~----  140 (443)
T PF04053_consen   96 NFKNE-----------VVKSIK-LPFSVEKIF--G--GNLLGVKSS-DFICFYDWETGKLI--------------R----  140 (443)
T ss_dssp             TTEE------------TT------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EE--------------E----
T ss_pred             cCccc-----------cceEEc-CCcccceEE--c--CcEEEEECC-CCEEEEEhhHccee--------------e----
Confidence            44321           112222 111233332  2  456655544 48999999987632              1    


Q ss_pred             CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004290          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (763)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~  246 (763)
                          .+     ....|..+.|+++ +++++..+.+ .+.|++..
T Consensus       141 ----~i-----~v~~vk~V~Ws~~-g~~val~t~~-~i~il~~~  173 (443)
T PF04053_consen  141 ----RI-----DVSAVKYVIWSDD-GELVALVTKD-SIYILKYN  173 (443)
T ss_dssp             ----EE-----SS-E-EEEEE-TT-SSEEEEE-S--SEEEEEE-
T ss_pred             ----EE-----ecCCCcEEEEECC-CCEEEEEeCC-eEEEEEec
Confidence                11     1124789999997 6788887755 66676654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.07  E-value=2.9  Score=44.23  Aligned_cols=92  Identities=8%  Similarity=0.091  Sum_probs=52.8

Q ss_pred             ccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCC------------
Q 004290           25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH------------   92 (763)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h------------   92 (763)
                      +....+.+++...+..+.+.   .....+....|||+|+.||-... +.|.+++..++...+....|-            
T Consensus        20 s~~~~y~i~d~~~~~~~~l~---~~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvy   95 (353)
T PF00930_consen   20 SFKGDYYIYDIETGEITPLT---PPPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVY   95 (353)
T ss_dssp             EEEEEEEEEETTTTEEEESS----EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEESES--TTTEEESB--HHH
T ss_pred             ccceeEEEEecCCCceEECc---CCccccccceeecCCCeeEEEec-CceEEEECCCCCeEEeccccceeEEcCccceec
Confidence            34455555553333222222   22667889999999999998764 689999998885554332230            


Q ss_pred             ----CCceEEEEEeeCCCCcEEEEEeC-CCcEEEE
Q 004290           93 ----SANVFCTKFVPETSDELVVSGAG-DAEVRLF  122 (763)
Q Consensus        93 ----~~~V~~v~~~p~~~~~~l~s~s~-dg~I~iw  122 (763)
                          -+.-..+.|+|+  +++|+.... +..|+.+
T Consensus        96 eEEv~~~~~~~~WSpd--~~~la~~~~d~~~v~~~  128 (353)
T PF00930_consen   96 EEEVFDRRSAVWWSPD--SKYLAFLRFDEREVPEY  128 (353)
T ss_dssp             HHHTSSSSBSEEE-TT--SSEEEEEEEE-TTS-EE
T ss_pred             cccccccccceEECCC--CCEEEEEEECCcCCceE
Confidence                112356889999  677776554 3334333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PHA02713 hypothetical protein; Provisional

Probab=95.05  E-value=1.3  Score=50.02  Aligned_cols=63  Identities=8%  Similarity=0.228  Sum_probs=34.8

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCeEEEEEccCCCC-ceEEEEEeeCCCCcEEEEEeCCC-----cEEEEECCCC
Q 004290           61 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDELVVSGAGDA-----EVRLFNLSRF  127 (763)
Q Consensus        61 ~g~~Lasgs~D------~~v~iWd~~~~~~~~~~~~~h~~-~V~~v~~~p~~~~~~l~s~s~dg-----~I~iwd~~~~  127 (763)
                      ++.+.+.||.+      ..+..||+.+.... .+..-... .-.+++.. +  +.+.+.|+.++     .+..||..+.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~-~--g~IYviGG~~~~~~~~sve~Ydp~~~  377 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVI-D--DTIYAIGGQNGTNVERTIECYTMGDD  377 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEE-C--CEEEEECCcCCCCCCceEEEEECCCC
Confidence            56777777753      34677888776532 22111111 11122222 3  57888888764     3788998864

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.05  E-value=0.41  Score=51.70  Aligned_cols=142  Identities=18%  Similarity=0.165  Sum_probs=77.0

Q ss_pred             CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcE
Q 004290           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL  172 (763)
Q Consensus        93 ~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i  172 (763)
                      ...+..+.++|+  +++++.++ ||.-.|+....             .+.  ...+.....+|.+ . ..+++-...++|
T Consensus        32 ~~~p~~ls~npn--gr~v~V~g-~geY~iyt~~~-------------~r~--k~~G~g~~~vw~~-~-n~yAv~~~~~~I   91 (443)
T PF04053_consen   32 EIYPQSLSHNPN--GRFVLVCG-DGEYEIYTALA-------------WRN--KAFGSGLSFVWSS-R-NRYAVLESSSTI   91 (443)
T ss_dssp             SS--SEEEE-TT--SSEEEEEE-TTEEEEEETTT-------------TEE--EEEEE-SEEEE-T-S-SEEEEE-TTS-E
T ss_pred             CcCCeeEEECCC--CCEEEEEc-CCEEEEEEccC-------------Ccc--cccCceeEEEEec-C-ccEEEEECCCeE
Confidence            345789999999  78888855 78888887432             121  1245567789988 4 456677778899


Q ss_pred             EEE-ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 004290          173 RQH-DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (763)
Q Consensus       173 ~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~  251 (763)
                      .++ ++......                       .+. .   ...+..|  .+  |.+|+..+.+ .|.+||..+++.+
T Consensus        92 ~I~kn~~~~~~k-----------------------~i~-~---~~~~~~I--f~--G~LL~~~~~~-~i~~yDw~~~~~i  139 (443)
T PF04053_consen   92 KIYKNFKNEVVK-----------------------SIK-L---PFSVEKI--FG--GNLLGVKSSD-FICFYDWETGKLI  139 (443)
T ss_dssp             EEEETTEE-TT--------------------------------SS-EEEE--E---SSSEEEEETT-EEEEE-TTT--EE
T ss_pred             EEEEcCccccce-----------------------EEc-C---CcccceE--Ec--CcEEEEECCC-CEEEEEhhHccee
Confidence            996 33222100                       000 0   0011222  11  4566666655 8999999998766


Q ss_pred             cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      ..+..                      . +|..|.|+++|.+++..+.+ .+++++.+.
T Consensus       140 ~~i~v----------------------~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  140 RRIDV----------------------S-AVKYVIWSDDGELVALVTKD-SIYILKYNL  174 (443)
T ss_dssp             EEESS------------------------E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred             eEEec----------------------C-CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence            54421                      1 38899999999998888755 667766544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.03  E-value=1.8  Score=41.74  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=72.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004290           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (763)
Q Consensus        62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  141 (763)
                      ..+++.|+..+.++--|..+|..+...  --...|.+-+..-   |++++.|...|.+++.++.++..          ..
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~--ilg~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs~----------~w   87 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEA--ILGVRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGSQ----------IW   87 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeeh--hhCceeeeeeEEE---CCEEEEEEccCcEEEEEecchhh----------ee
Confidence            457788999999999999999877653  2234454444442   57899999999999999998532          33


Q ss_pred             eeecccCceeEE-EEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290          142 LYQCHTRRVKKL-AVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (763)
Q Consensus       142 ~~~~h~~~v~~l-~~sp~~~~~l~s~s~dg~i~iwd~~~~~  181 (763)
                      .+.. .+.|.+= ...+ ++.+++.++.|++.+..|.++..
T Consensus        88 ~f~~-~~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~  126 (354)
T KOG4649|consen   88 NFVI-LETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYG  126 (354)
T ss_pred             eeee-hhhhccceEEcC-CCceEEEecCCCcEEEecccccc
Confidence            3332 2223322 2334 66899999999999999998865

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.89  E-value=4.3  Score=40.01  Aligned_cols=214  Identities=7%  Similarity=0.001  Sum_probs=112.8

Q ss_pred             ccccceeeccc-cCceEEEEeCCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004290           39 RLSQERELEGH-QGCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (763)
Q Consensus        39 ~~~~~~~l~gH-~~~V~~l~fsp~g~~Lasgs~D~--~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~  115 (763)
                      +.+.+.++.-. ......+.|..+|.++-|.+.-|  .|+.+|+.+++.+....-....--..++...+   .+..-.=.
T Consensus        32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d---~l~qLTWk  108 (264)
T PF05096_consen   32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD---KLYQLTWK  108 (264)
T ss_dssp             EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT---EEEEEESS
T ss_pred             eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC---EEEEEEec
Confidence            34566666522 23455788877888888887766  69999999998776553232322344555543   55555667


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (763)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  195 (763)
                      ++...+||..+.          +.+..+. ..+.=..|+.  ++..++.| .....|+++|..+.+..           .
T Consensus       109 ~~~~f~yd~~tl----------~~~~~~~-y~~EGWGLt~--dg~~Li~S-DGS~~L~~~dP~~f~~~-----------~  163 (264)
T PF05096_consen  109 EGTGFVYDPNTL----------KKIGTFP-YPGEGWGLTS--DGKRLIMS-DGSSRLYFLDPETFKEV-----------R  163 (264)
T ss_dssp             SSEEEEEETTTT----------EEEEEEE--SSS--EEEE--CSSCEEEE--SSSEEEEE-TTT-SEE-----------E
T ss_pred             CCeEEEEccccc----------eEEEEEe-cCCcceEEEc--CCCEEEEE-CCccceEEECCcccceE-----------E
Confidence            899999999862          3344443 3455667773  24445544 44568889997765422           1


Q ss_pred             EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccccc-cc-
Q 004290          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH-LS-  273 (763)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  273 (763)
                      .+ ....+        ......++-+.|-.  |.+.|-.-....|...|..+|+....+..        ..+.+.. .. 
T Consensus       164 ~i-~V~~~--------g~pv~~LNELE~i~--G~IyANVW~td~I~~Idp~tG~V~~~iDl--------s~L~~~~~~~~  224 (264)
T PF05096_consen  164 TI-QVTDN--------GRPVSNLNELEYIN--GKIYANVWQTDRIVRIDPETGKVVGWIDL--------SGLRPEVGRDK  224 (264)
T ss_dssp             EE-E-EET--------TEE---EEEEEEET--TEEEEEETTSSEEEEEETTT-BEEEEEE---------HHHHHHHTSTT
T ss_pred             EE-EEEEC--------CEECCCcEeEEEEc--CEEEEEeCCCCeEEEEeCCCCeEEEEEEh--------hHhhhcccccc
Confidence            11 11100        01123455666653  55666666666777778887764433210        0000000 00 


Q ss_pred             CCCCCccceeEEEEcCCCCEEEEEeC
Q 004290          274 EHGRSSLHLTHVTFSPNGEEVLLSYS  299 (763)
Q Consensus       274 ~~g~~~~~i~~v~~spdg~~l~~~s~  299 (763)
                      .......-.+.++|.|....|+..+.
T Consensus       225 ~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  225 SRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             ST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             cccccCCeeEeEeEeCCCCEEEEEeC
Confidence            00011225899999998776666654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.88  E-value=2.2  Score=43.64  Aligned_cols=246  Identities=13%  Similarity=0.131  Sum_probs=127.4

Q ss_pred             cccccchhhhhcccccee--ecc-cc----CceEEEEeCCCCCEEEEE--eCCCcEEEEeCCCCeEEEEEccCCCCceEE
Q 004290           28 HSLQMHSSLVRRLSQERE--LEG-HQ----GCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVFC   98 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~--l~g-H~----~~V~~l~fsp~g~~Lasg--s~D~~v~iWd~~~~~~~~~~~~~h~~~V~~   98 (763)
                      --|.+|+  .+++.+..+  |.+ |.    -..+.++++.||++++..  +--..|.|-|+..++.+..+...  +   |
T Consensus        67 Dvv~~~D--~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--G---C  139 (342)
T PF06433_consen   67 DVVEIWD--TQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--G---C  139 (342)
T ss_dssp             EEEEEEE--TTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--S---E
T ss_pred             eEEEEEe--cCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--C---E
Confidence            3566676  455555543  332 12    123457888999988765  33457999999999998888321  1   3


Q ss_pred             EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCcee-EEEEecCCCCEEEEEeCCCcEEEEEC
Q 004290           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDF  177 (763)
Q Consensus        99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~sp~~~~~l~s~s~dg~i~iwd~  177 (763)
                      .-..|.. .+-|.+-+.||.+.-..+... ++..    ......|..-.+++. .-++.. .+..++-.+.+|.|+--|+
T Consensus       140 ~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~-Gk~~----~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dl  212 (342)
T PF06433_consen  140 WLIYPSG-NRGFSMLCGDGSLLTVTLDAD-GKEA----QKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADL  212 (342)
T ss_dssp             EEEEEEE-TTEEEEEETTSCEEEEEETST-SSEE----EEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEE
T ss_pred             EEEEecC-CCceEEEecCCceEEEEECCC-CCEe----EeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEec
Confidence            3334543 356888889999999998852 2110    000112222222232 223443 3334444678899999998


Q ss_pred             CCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe--------CC--CcEEEEeCCC
Q 004290          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--------SD--AFARLYDRRM  247 (763)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs--------~D--g~i~iwd~~~  247 (763)
                      ......          ...-|.+.....+.-...   .+.---+++++.. +.|++--        .|  ..|.+||+.+
T Consensus       213 sg~~~~----------~~~~~~~~t~~e~~~~Wr---PGG~Q~~A~~~~~-~rlyvLMh~g~~gsHKdpgteVWv~D~~t  278 (342)
T PF06433_consen  213 SGDSAK----------FGKPWSLLTDAEKADGWR---PGGWQLIAYHAAS-GRLYVLMHQGGEGSHKDPGTEVWVYDLKT  278 (342)
T ss_dssp             TTSSEE----------EEEEEESS-HHHHHTTEE---E-SSS-EEEETTT-TEEEEEEEE--TT-TTS-EEEEEEEETTT
T ss_pred             cCCccc----------ccCcccccCccccccCcC---Ccceeeeeecccc-CeEEEEecCCCCCCccCCceEEEEEECCC
Confidence            776421          011111111000000000   1112235666643 3333321        12  2477778887


Q ss_pred             CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCC-EEEEEe-CCCeEEEEECCCCCccceEeecCCC
Q 004290          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSY-SGEHVYLMDVNHAGGRAMRYTVGDA  323 (763)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~-~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~  323 (763)
                      .+.+..+.                +      ..++.+|..+.+.+ +|++.+ .++.+.+||..+++........+..
T Consensus       279 ~krv~Ri~----------------l------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~  334 (342)
T PF06433_consen  279 HKRVARIP----------------L------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGET  334 (342)
T ss_dssp             TEEEEEEE----------------E------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS
T ss_pred             CeEEEEEe----------------C------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCC
Confidence            76554331                1      11488899998765 665554 4899999999998755544444443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.88  E-value=1.2  Score=47.37  Aligned_cols=149  Identities=13%  Similarity=0.173  Sum_probs=85.6

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC------CEEEEEeCCCcEEEEECCCCC
Q 004290          108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP------HVVWSASEDGTLRQHDFRQGS  181 (763)
Q Consensus       108 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~------~~l~s~s~dg~i~iwd~~~~~  181 (763)
                      -+|.++..-..++-.|++.+          +.+...+-+.. |.-+.+.|+..      ..-+.|-.|..|.-||.|-..
T Consensus       347 lil~~~~~~~~l~klDIE~G----------KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~  415 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERG----------KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG  415 (644)
T ss_pred             eEeeCCCCcCcceeeecccc----------eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccC
Confidence            34555666667777787763          33555655555 66667766321      111246678899999998543


Q ss_pred             CCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC
Q 004290          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (763)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (763)
                      .-           ...+.  .++.      -.......|++-..+  .++|+||.+|.||+||.- +....+.       
T Consensus       416 ~~-----------kl~~~--q~kq------y~~k~nFsc~aTT~s--G~IvvgS~~GdIRLYdri-~~~AKTA-------  466 (644)
T KOG2395|consen  416 KN-----------KLAVV--QSKQ------YSTKNNFSCFATTES--GYIVVGSLKGDIRLYDRI-GRRAKTA-------  466 (644)
T ss_pred             cc-----------eeeee--eccc------cccccccceeeecCC--ceEEEeecCCcEEeehhh-hhhhhhc-------
Confidence            20           11110  0000      001223445555543  499999999999999984 3221111       


Q ss_pred             CcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                            .      .|... +|+.|..+.+|++|++.+ +..+.+-++.-
T Consensus       467 ------l------PgLG~-~I~hVdvtadGKwil~Tc-~tyLlLi~t~~  501 (644)
T KOG2395|consen  467 ------L------PGLGD-AIKHVDVTADGKWILATC-KTYLLLIDTLI  501 (644)
T ss_pred             ------c------cccCC-ceeeEEeeccCcEEEEec-ccEEEEEEEec
Confidence                  0      11222 699999999999887655 55666665543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.76  E-value=0.085  Score=49.66  Aligned_cols=107  Identities=16%  Similarity=0.134  Sum_probs=58.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004290           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (763)
Q Consensus        62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  141 (763)
                      +..|+.|+.+|.|.+|++............-...|.++--.-+. +.+..+++.||.|+.|++....          .+.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~-~~~~c~~~~dg~ir~~n~~p~k----------~~g  138 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRD-SSLGCVGAQDGRIRACNIKPNK----------VLG  138 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccc-cceeEEeccCCceeeeccccCc----------eee
Confidence            45788999999999999863211111111222334333222221 4588999999999999998522          133


Q ss_pred             eeeccc-CceeEEEEecCCCCEEEEE--eCCCcEEEEECCCC
Q 004290          142 LYQCHT-RRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFRQG  180 (763)
Q Consensus       142 ~~~~h~-~~v~~l~~sp~~~~~l~s~--s~dg~i~iwd~~~~  180 (763)
                      ....|. .++..+..+. ...+++.+  |.|..++.|++..-
T Consensus       139 ~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  139 YVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             eeccccCCCcceeEEec-CCceEEeeccccchhhhhcchhhh
Confidence            333444 2333333332 23444444  55555555555443

>PRK02888 nitrous-oxide reductase; Validated

Probab=94.72  E-value=1.3  Score=49.15  Aligned_cols=100  Identities=10%  Similarity=0.053  Sum_probs=64.2

Q ss_pred             CcEEEEeCCC-----CeEEEEEccCCCCceEEEEEeeCCCCcEEEEE-eCCCcEEEEECCCCCCCCCCCCCCCC----ce
Q 004290           72 THINVWSYSS-----RKLLHSIETGHSANVFCTKFVPETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITP----SA  141 (763)
Q Consensus        72 ~~v~iWd~~~-----~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~----~~  141 (763)
                      ++|.+.|..+     .+.+..+  .-......+.++|+  |++++++ ..+.+|.|.|+........  ....+    ..
T Consensus       296 n~V~VID~~t~~~~~~~v~~yI--PVGKsPHGV~vSPD--GkylyVanklS~tVSVIDv~k~k~~~~--~~~~~~~~vva  369 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYV--PVPKNPHGVNTSPD--GKYFIANGKLSPTVTVIDVRKLDDLFD--GKIKPRDAVVA  369 (635)
T ss_pred             CEEEEEECCccccCCcceEEEE--ECCCCccceEECCC--CCEEEEeCCCCCcEEEEEChhhhhhhh--ccCCccceEEE
Confidence            4588888877     3455555  23456789999999  5665555 4599999999986331000  00011    11


Q ss_pred             eeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290          142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (763)
Q Consensus       142 ~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~  179 (763)
                      ... -.......+|.+ .++...|..-|..|..||+..
T Consensus       370 eve-vGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        370 EPE-LGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             eec-cCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence            111 122345678888 457888888999999999886

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.61  E-value=0.11  Score=36.09  Aligned_cols=32  Identities=16%  Similarity=0.248  Sum_probs=28.9

Q ss_pred             CcceEEEEeeCCCCeEEEEeCCCcEEEEcCCC
Q 004290          669 EAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA  700 (763)
Q Consensus       669 ~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~  700 (763)
                      ...|.+++|+|...+||.+..||.|.|+.+..
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            45799999999999999999999999999843

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.34  E-value=11  Score=42.02  Aligned_cols=30  Identities=20%  Similarity=0.424  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCCcEEEEEcCcCcEEEEEec
Q 004290          638 RGDYIASGSDDGRWFIWEKQTGRLIKMLLG  667 (763)
Q Consensus       638 d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~g  667 (763)
                      .+.+|+.|+.||.++-+|.+||+++-.++-
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            557899999999999999999999988765

The alignment model contains an 8-bladed beta-propeller.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.33  E-value=8.3  Score=41.61  Aligned_cols=35  Identities=6%  Similarity=-0.013  Sum_probs=28.4

Q ss_pred             cceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 004290          216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (763)
Q Consensus       216 ~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~  251 (763)
                      .++..++++|+ ++++|.-..+|.+.+....-.+.+
T Consensus       217 ~~i~~iavSpn-g~~iAl~t~~g~l~v~ssDf~~~~  251 (410)
T PF04841_consen  217 GPIIKIAVSPN-GKFIALFTDSGNLWVVSSDFSEKL  251 (410)
T ss_pred             CCeEEEEECCC-CCEEEEEECCCCEEEEECccccee
Confidence            47899999997 689999999999999876654433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.25  E-value=3.5  Score=43.98  Aligned_cols=143  Identities=15%  Similarity=0.171  Sum_probs=91.6

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEE-----EEEeCCCcEEEEECCCCCCCCCCCCCCCC
Q 004290           65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-----VSGAGDAEVRLFNLSRFSGRGLDDNAITP  139 (763)
Q Consensus        65 Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l-----~s~s~dg~I~iwd~~~~~~~~~~~~~~~~  139 (763)
                      |.++..-..|.-.|++.|+.+... .-|.. |+-+.+.|+..+..|     +.|-.|..|.-||++-...        ..
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~--------~k  418 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK--------NK  418 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc--------ce
Confidence            446666677888999999999887 44444 777888887433333     3355688899999985321        11


Q ss_pred             ceeeecc----cCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCc
Q 004290          140 SALYQCH----TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT  215 (763)
Q Consensus       140 ~~~~~~h----~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (763)
                      +....+|    .....|.+-.  +..+||.||.+|.|++||- .+...                        -.-+|+-.
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~A------------------------KTAlPgLG  471 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRA------------------------KTALPGLG  471 (644)
T ss_pred             eeeeeccccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhh------------------------hhcccccC
Confidence            2222222    2234455544  3458999999999999995 33211                        11234556


Q ss_pred             cceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004290          216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (763)
Q Consensus       216 ~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~  246 (763)
                      .+|..+..+.+ |++|++.+ +.++.+-|+.
T Consensus       472 ~~I~hVdvtad-GKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  472 DAIKHVDVTAD-GKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             CceeeEEeecc-CcEEEEec-ccEEEEEEEe
Confidence            78889999887 66666544 5677777764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.25  E-value=7  Score=39.56  Aligned_cols=160  Identities=16%  Similarity=0.155  Sum_probs=85.7

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCC
Q 004290           60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP  139 (763)
Q Consensus        60 p~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~  139 (763)
                      ..++.|+.|..+| |.+++.........+  .+...|..+...|+  -+.|+.-+ |+.+.++++..............+
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~~--~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLPE--LNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEecc--cCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            3578899999998 899998433333333  23344999999998  35555554 599999999864322110000000


Q ss_pred             c----eeeecccCceeEEE-EecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCC
Q 004290          140 S----ALYQCHTRRVKKLA-VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ  214 (763)
Q Consensus       140 ~----~~~~~h~~~v~~l~-~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (763)
                      .    .........+...+ -....+...+.+...++|.+|..........         ..+        +.+.    -
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~---------~~~--------ke~~----l  137 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS---------KLL--------KEIS----L  137 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc---------cee--------EEEE----c
Confidence            0    00111222333333 1122233333444556898888776421100         000        0110    1


Q ss_pred             ccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 004290          215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (763)
Q Consensus       215 ~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~  250 (763)
                      ...+.+++|.+   +.+++|..++ ..+.|+.++..
T Consensus       138 p~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~  169 (275)
T PF00780_consen  138 PDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSP  169 (275)
T ss_pred             CCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCc
Confidence            24677888884   4777777554 66788886654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.12  E-value=2.3  Score=47.94  Aligned_cols=108  Identities=13%  Similarity=0.119  Sum_probs=65.8

Q ss_pred             CCCCEEEEEeCCC------cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC------CcEEEEECCCC
Q 004290           60 SKGSLLISGSDDT------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSRF  127 (763)
Q Consensus        60 p~g~~Lasgs~D~------~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d------g~I~iwd~~~~  127 (763)
                      ..+.+++.|+.++      .+..+|..++.......-.....-.+++...+   .+.++|+.|      .++..||....
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~---~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG---KLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC---EEEEEccccCCCcccceEEEecCCCC
Confidence            3466778888773      57889988875443322233344556666654   789999998      34677887764


Q ss_pred             CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-----cEEEEECCCCC
Q 004290          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGS  181 (763)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-----~i~iwd~~~~~  181 (763)
                      .        |..+..+...........+   ++.+.+.||.||     +|-.||.++.+
T Consensus       360 ~--------W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  360 Q--------WTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNK  407 (571)
T ss_pred             c--------eeccCCccCccccceeEEE---CCEEEEEeccccccccccEEEecCCCCc
Confidence            3        2333344333322222222   668888999886     46667776654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.03  E-value=3.8  Score=46.26  Aligned_cols=137  Identities=16%  Similarity=0.204  Sum_probs=73.1

Q ss_pred             cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCC------CcEEEEeCCCCeEEEEEccCCCCce-EEEE
Q 004290           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANV-FCTK  100 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D------~~v~iWd~~~~~~~~~~~~~h~~~V-~~v~  100 (763)
                      +.+..++.....+.....+.... .-.++++. ++.+.++|+.|      .++..||..+.+-.. +..-..... .+++
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r-~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~  377 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPR-CRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVA  377 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCccc-ccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeE
Confidence            44555554444444444444222 23334443 46788899988      357778887766333 211111111 1222


Q ss_pred             EeeCCCCcEEEEEeCCCc-----EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-----
Q 004290          101 FVPETSDELVVSGAGDAE-----VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----  170 (763)
Q Consensus       101 ~~p~~~~~~l~s~s~dg~-----I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-----  170 (763)
                      .. +  |.+.|.|+.||.     |-.||..+..        +..+..+..   .....+...-++.+.+.||.++     
T Consensus       378 ~l-~--g~iYavGG~dg~~~l~svE~YDp~~~~--------W~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l  443 (571)
T KOG4441|consen  378 VL-D--GKLYAVGGFDGEKSLNSVECYDPVTNK--------WTPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCL  443 (571)
T ss_pred             EE-C--CEEEEEeccccccccccEEEecCCCCc--------ccccCCCCc---ceeeeEEEEECCEEEEEcCcCCCcccc
Confidence            22 2  688999999865     6777777533        333443332   2222222222667888888654     


Q ss_pred             -cEEEEECCCCC
Q 004290          171 -TLRQHDFRQGS  181 (763)
Q Consensus       171 -~i~iwd~~~~~  181 (763)
                       ++..||..+++
T Consensus       444 ~sve~YDP~t~~  455 (571)
T KOG4441|consen  444 NSVECYDPETNT  455 (571)
T ss_pred             ceEEEEcCCCCc
Confidence             45667776654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.82  E-value=1.8  Score=42.31  Aligned_cols=61  Identities=13%  Similarity=0.252  Sum_probs=45.0

Q ss_pred             EeCCCCCEEEEEeCC-----CcEEEEeCCCC-eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004290           57 SWNSKGSLLISGSDD-----THINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (763)
Q Consensus        57 ~fsp~g~~Lasgs~D-----~~v~iWd~~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw  122 (763)
                      .|||||.+|...-.|     |.|=|||...+ ..+..+ ..|.-....+.|.+|  |+.++.+.  |-|...
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~D--Grtlvvan--GGIeth  186 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMAD--GRTLVVAN--GGIETH  186 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEecC--CcEEEEeC--Cceecc
Confidence            488999988755333     67889998855 345566 677777789999999  78888764  556655

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=93.79  E-value=0.54  Score=50.03  Aligned_cols=164  Identities=15%  Similarity=0.129  Sum_probs=83.5

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~  131 (763)
                      .|+.+.|.++..-||.|-..|.|.||.+...+.-..   .-..+-....|.+-.        ..++.-.+-|+.......
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~l~di~~r~~~~   71 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN---REQPPDLDYNFRRFS--------LNNSPGKLTDISDRAPPS   71 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S----------GGGSS-SEEE-GGG--TT
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc---cCCCcccCccccccc--------ccCCCcceEEehhhCCcc
Confidence            588999999988899999999999998765432210   001111122222210        112233344444311100


Q ss_pred             CCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCC
Q 004290          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (763)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (763)
                      + .....|...+....++|++++.+.  -.+++.|..+|.+.|.|+|.+..              ++...-.   .....
T Consensus        72 ~-~~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPav--------------I~~~~i~---~~~~~  131 (395)
T PF08596_consen   72 L-KEGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAV--------------IYNENIR---ESFLS  131 (395)
T ss_dssp             --SEEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEE--------------EEEEEGG---G--T-
T ss_pred             c-ccccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeE--------------Eeecccc---ccccc
Confidence            0 000234455556689999999974  45999999999999999988752              2211000   00011


Q ss_pred             CCCccceEEEEEeC----CCC---cEEEEEeCCCcEEEEeCC
Q 004290          212 PKQTLSLKSCDISS----TRP---HLLLVGGSDAFARLYDRR  246 (763)
Q Consensus       212 ~~~~~~v~~i~~~p----~~~---~~l~sgs~Dg~i~iwd~~  246 (763)
                      ......++++.|.-    +++   -++++|...|.+.+|.+.
T Consensus       132 ~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  132 KSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred             cccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence            22345677777752    112   378999999999999774

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.77  E-value=0.15  Score=58.32  Aligned_cols=73  Identities=33%  Similarity=0.575  Sum_probs=56.1

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC-CCcEEEEEeCCCcEEEEECC
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDAEVRLFNLS  125 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~-~~~~l~s~s~dg~I~iwd~~  125 (763)
                      .++|++++|+.+|.+++.|-.+|.|.+||..+++.++.+ ..|..++.++-+.--. .+..++++..-|.  +|.+.
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i-~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI-TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee-eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            578999999999999999999999999999999988887 5666666555444311 1356777776665  66654

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.70  E-value=0.12  Score=48.73  Aligned_cols=69  Identities=13%  Similarity=0.160  Sum_probs=59.4

Q ss_pred             cCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCC-cceEEEEeeCCCCeEEEE--eCCCcEEEEcCCCCCCc
Q 004290          636 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVATS--GIDNTIKIWTPSASVPS  704 (763)
Q Consensus       636 s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~-~~V~~v~~sp~~~~laS~--s~D~~IrvW~~~~~~~~  704 (763)
                      ..++.+..+|+.||.|+-|+++.++.+...-.|. ..+..+..+..+..|+++  |.|..++.|++..-...
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~  182 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDE  182 (238)
T ss_pred             ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhcc
Confidence            4567789999999999999999999999998898 788888888888888888  88999999988766543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=93.67  E-value=5.4  Score=40.92  Aligned_cols=193  Identities=10%  Similarity=0.068  Sum_probs=101.3

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcc---CC-CCceEEEEEeeCCCCcEEEEEeC---------CCcE
Q 004290           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET---GH-SANVFCTKFVPETSDELVVSGAG---------DAEV  119 (763)
Q Consensus        53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~---~h-~~~V~~v~~~p~~~~~~l~s~s~---------dg~I  119 (763)
                      +.++..-..+..|+++..  -+.+++.+++..+..+..   +. ....+.+...|+  |.+.++...         -..-
T Consensus        68 ~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd--G~~wfgt~~~~~~~~~~~~~~G  143 (307)
T COG3386          68 FSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD--GRIWFGDMGYFDLGKSEERPTG  143 (307)
T ss_pred             cccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC--CCEEEeCCCccccCccccCCcc
Confidence            344333334445555433  467788776655333311   11 244567888888  566555433         0111


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      .+|.+... +        .....+..+-..-+.|+|+|++..++++=+..+.|.-|++......       .........
T Consensus       144 ~lyr~~p~-g--------~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~-------~~~~~~~~~  207 (307)
T COG3386         144 SLYRVDPD-G--------GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGP-------IGGRRGFVD  207 (307)
T ss_pred             eEEEEcCC-C--------CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCc-------cCCcceEEE
Confidence            34443310 1        1234444556667899999966555555556688888887641100       000011111


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC-cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (763)
                                 .....+..-.++...+ +++.+++...| .|.+|+.. ++.+..+..+.                    
T Consensus       208 -----------~~~~~G~PDG~~vDad-G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--------------------  254 (307)
T COG3386         208 -----------FDEEPGLPDGMAVDAD-GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--------------------  254 (307)
T ss_pred             -----------ccCCCCCCCceEEeCC-CCEEEecccCCceEEEECCC-CcEEEEEECCC--------------------
Confidence                       1112344556777776 56665555554 89999988 66554432210                    


Q ss_pred             ccceeEEEEc-CCCCEEEEEeC
Q 004290          279 SLHLTHVTFS-PNGEEVLLSYS  299 (763)
Q Consensus       279 ~~~i~~v~~s-pdg~~l~~~s~  299 (763)
                       ..+++++|- |+.+.|++.+.
T Consensus       255 -~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         255 -KRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             -CCCccceEeCCCcCEEEEEec
Confidence             147777775 45566665554

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.63  E-value=1.9  Score=48.20  Aligned_cols=123  Identities=13%  Similarity=0.097  Sum_probs=78.8

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~  130 (763)
                      ....-+.-|.-++.-+.-+...++.|||...+.....-.....+.|.++.|....+++.+++.+..+.|.++--...+. 
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy-  108 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY-  108 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh-
Confidence            3444455555555444444556799999998875554423457899999998776689999999999999997643111 


Q ss_pred             CCCCCCCCCceee--eccc-CceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004290          131 GLDDNAITPSALY--QCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (763)
Q Consensus       131 ~~~~~~~~~~~~~--~~h~-~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~  177 (763)
                      ....+.+.+++.+  ..|+ .+|.+..|.+ ++.+++.+|  ..+.|+|-
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC--CEEEEECC
Confidence            1111223344433  2344 6799999998 555554433  57888863

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.37  E-value=0.2  Score=57.34  Aligned_cols=73  Identities=19%  Similarity=0.349  Sum_probs=58.3

Q ss_pred             ccccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEee---CCCCeEEEEeCCCcEEEEcCCC
Q 004290          624 NVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCH---PFDCVVATSGIDNTIKIWTPSA  700 (763)
Q Consensus       624 ~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~s---p~~~~laS~s~D~~IrvW~~~~  700 (763)
                      .+++++.    |+.||++++.|-.+|.|.+||+.++++++.+.-|..++++|-++   .++..+.|+..-|.  +|.+.=
T Consensus       131 ~~Vtsva----fn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~  204 (1206)
T KOG2079|consen  131 GPVTSVA----FNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLVF  204 (1206)
T ss_pred             CcceeeE----ecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence            4466555    89999999999999999999999999999998887777776665   44567888877776  676543


Q ss_pred             CC
Q 004290          701 SV  702 (763)
Q Consensus       701 ~~  702 (763)
                      ..
T Consensus       205 nk  206 (1206)
T KOG2079|consen  205 NK  206 (1206)
T ss_pred             ch
Confidence            33

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.32  E-value=9  Score=37.76  Aligned_cols=229  Identities=14%  Similarity=0.157  Sum_probs=122.1

Q ss_pred             EEEEeCCCC-CEEEEEeCCCc-EEEEeCCCCeEEEEEccCCCCc--eEEEEEeeCCCCcEEEEEeC-----CCcEEEEEC
Q 004290           54 NAISWNSKG-SLLISGSDDTH-INVWSYSSRKLLHSIETGHSAN--VFCTKFVPETSDELVVSGAG-----DAEVRLFNL  124 (763)
Q Consensus        54 ~~l~fsp~g-~~Lasgs~D~~-v~iWd~~~~~~~~~~~~~h~~~--V~~v~~~p~~~~~~l~s~s~-----dg~I~iwd~  124 (763)
                      ..++|+|.- .-++.+-.-|+ ..++|..+.+.+.++. ..++.  --.-.|+|+  |.+|...-.     -|.|-|||.
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~d--G~~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPD--GRLLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-cccCceeecccccCCC--CcEEEeecCCCCCCCceEEEEec
Confidence            457788854 44555655555 4688988876655542 11111  112358999  677776543     367999999


Q ss_pred             CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEE-ECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH-DFRQGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                      +.+-         ..+..+..|.-....|.|.+ +++.++.+.  |-|..- |....+.-    -...+...++.+...+
T Consensus       148 r~~f---------qrvgE~~t~GiGpHev~lm~-DGrtlvvan--GGIethpdfgR~~lN----ldsMePSlvlld~atG  211 (366)
T COG3490         148 REGF---------QRVGEFSTHGIGPHEVTLMA-DGRTLVVAN--GGIETHPDFGRTELN----LDSMEPSLVLLDAATG  211 (366)
T ss_pred             cccc---------ceecccccCCcCcceeEEec-CCcEEEEeC--CceecccccCccccc----hhhcCccEEEEecccc
Confidence            8532         33677888888889999999 557775553  556554 33222110    1112233455665555


Q ss_pred             ceeeccCCC--CCccceEEEEEeCCCCcEEEEEeC-CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290          204 AKRSLADPP--KQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (763)
Q Consensus       204 ~~~~~~~~~--~~~~~v~~i~~~p~~~~~l~sgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (763)
                      ....-...+  .+..+|..++..++ + .+..|+. .|.     .....++-...   .+.+.++.+.-......+..+ 
T Consensus       212 ~liekh~Lp~~l~~lSiRHld~g~d-g-tvwfgcQy~G~-----~~d~ppLvg~~---~~g~~l~~~~~pee~~~~~an-  280 (366)
T COG3490         212 NLIEKHTLPASLRQLSIRHLDIGRD-G-TVWFGCQYRGP-----RNDLPPLVGHF---RKGEPLEFLDLPEEQTAAFAN-  280 (366)
T ss_pred             chhhhccCchhhhhcceeeeeeCCC-C-cEEEEEEeeCC-----CccCCcceeec---cCCCcCcccCCCHHHHHHHHh-
Confidence            554444444  45567888888886 3 3333331 110     00000000000   000111111000000011122 


Q ss_pred             ceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCC
Q 004290          281 HLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG  312 (763)
Q Consensus       281 ~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~  312 (763)
                      .|-+|+...+..+++..+- .+...+||..++.
T Consensus       281 YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~  313 (366)
T COG3490         281 YIGSIAANRRDGLVALTSPRGNRAVIWDAATGA  313 (366)
T ss_pred             hhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence            3778888876666666555 6678899999975

>PHA02713 hypothetical protein; Provisional

Probab=93.17  E-value=1.9  Score=48.60  Aligned_cols=147  Identities=6%  Similarity=0.053  Sum_probs=75.3

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCeEEE--EEccCCCCceEEEEEeeCCCCcEEEEEeCCC----------------
Q 004290           61 KGSLLISGSDDT-----HINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDA----------------  117 (763)
Q Consensus        61 ~g~~Lasgs~D~-----~v~iWd~~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg----------------  117 (763)
                      +|++.+.||.++     .|..||..+.+-..  .+. ...... +++ .-+  +.+.+.|+.++                
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp-~~r~~~-~~~-~~~--g~IYviGG~~~~~~~~~~~~~~~~~~~  425 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP-IALSSY-GMC-VLD--QYIYIIGGRTEHIDYTSVHHMNSIDME  425 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCC-cccccc-cEE-EEC--CEEEEEeCCCccccccccccccccccc
Confidence            577778888764     47889988765332  111 111111 121 123  67888887653                


Q ss_pred             -------cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC------cEEEEECCC-CCCC
Q 004290          118 -------EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG------TLRQHDFRQ-GSSC  183 (763)
Q Consensus       118 -------~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg------~i~iwd~~~-~~~~  183 (763)
                             .|..||..+...        ..+..+...... .+++..  ++.+.+.||.++      .+..||..+ .+- 
T Consensus       426 ~~~~~~~~ve~YDP~td~W--------~~v~~m~~~r~~-~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W-  493 (557)
T PHA02713        426 EDTHSSNKVIRYDTVNNIW--------ETLPNFWTGTIR-PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW-  493 (557)
T ss_pred             ccccccceEEEECCCCCeE--------eecCCCCccccc-CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCe-
Confidence                   466777775332        222333211111 122322  456777777542      356677765 331 


Q ss_pred             CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC--cEEEEeCCCCC
Q 004290          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA--FARLYDRRMLP  249 (763)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg--~i~iwd~~~~~  249 (763)
                                            ..+...+........+.+   ++.+.++|+.++  .+..||..+.+
T Consensus       494 ----------------------~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        494 ----------------------ELITTTESRLSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             ----------------------eEccccCcccccceeEEE---CCEEEEEeeecceeehhhcCccccc
Confidence                                  111111212222222333   367999999888  67788877653

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.97  E-value=8.8  Score=36.67  Aligned_cols=160  Identities=14%  Similarity=0.085  Sum_probs=88.9

Q ss_pred             EEEEEeCCCcEEEEeCC--CCeEEEEEcc----CCCCceEEEEEeeCCCCcEEEEEeCC---------CcEEEEECCCCC
Q 004290           64 LLISGSDDTHINVWSYS--SRKLLHSIET----GHSANVFCTKFVPETSDELVVSGAGD---------AEVRLFNLSRFS  128 (763)
Q Consensus        64 ~Lasgs~D~~v~iWd~~--~~~~~~~~~~----~h~~~V~~v~~~p~~~~~~l~s~s~d---------g~I~iwd~~~~~  128 (763)
                      +.+.++..-.|.-||..  .-+..+++..    ......+.-..+|+  |++++-.-.|         |.++.|-...  
T Consensus        73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~--Gryy~GtMad~~~~le~~~g~Ly~~~~~h--  148 (310)
T KOG4499|consen   73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPD--GRYYGGTMADFGDDLEPIGGELYSWLAGH--  148 (310)
T ss_pred             EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCC--CceeeeeeccccccccccccEEEEeccCC--
Confidence            44444443344557733  2333333211    11345566677888  6774432222         3344444432  


Q ss_pred             CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEE--CCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD--FRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (763)
                                .+..+...-+--+.++|+.+...+.++-+.+-.|.-||  ..++..         .....+++++.....
T Consensus       149 ----------~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~---------snr~~i~dlrk~~~~  209 (310)
T KOG4499|consen  149 ----------QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL---------SNRKVIFDLRKSQPF  209 (310)
T ss_pred             ----------CceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccc---------cCcceeEEeccCCCc
Confidence                      12222223344567899875555566667788888888  444432         244566776654322


Q ss_pred             eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCccc
Q 004290          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (763)
Q Consensus       207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~  254 (763)
                      .-.       ....+++..+ |+++++.-+.++|...|..+++.+.++
T Consensus       210 e~~-------~PDGm~ID~e-G~L~Va~~ng~~V~~~dp~tGK~L~ei  249 (310)
T KOG4499|consen  210 ESL-------EPDGMTIDTE-GNLYVATFNGGTVQKVDPTTGKILLEI  249 (310)
T ss_pred             CCC-------CCCcceEccC-CcEEEEEecCcEEEEECCCCCcEEEEE
Confidence            111       1123444554 788888889999999999999877655

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.75  E-value=9.6  Score=43.13  Aligned_cols=114  Identities=12%  Similarity=0.135  Sum_probs=59.1

Q ss_pred             CceEEEEeCCCCCEEEEEe------CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC-CcEEEEE
Q 004290           51 GCVNAISWNSKGSLLISGS------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFN  123 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs------~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d-g~I~iwd  123 (763)
                      ..+...+++|+|+.+|...      .|+.-.||=...+.....+..+.  ....-.|+|+  |..|.+.... ..+++.+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspD--G~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLD--ADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCC--CCceEEEecCcceEEEec
Confidence            4678899999999887654      34444445332222223332333  3778899999  5766666532 1222222


Q ss_pred             CCCCCCCCC--CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004290          124 LSRFSGRGL--DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ  174 (763)
Q Consensus       124 ~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~i  174 (763)
                      ... .++..  ...... ...  ...+.|..+.|+|++.++.+..  ++.|++
T Consensus       426 ~~~-~gql~~~~vd~ge-~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~V  472 (591)
T PRK13616        426 DPA-TGQLARTPVDASA-VAS--RVPGPISELQLSRDGVRAAMII--GGKVYL  472 (591)
T ss_pred             cCC-CceEEEEeccCch-hhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEE
Confidence            111 00000  000001 111  2356799999999554444433  466666

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.39  E-value=26  Score=40.63  Aligned_cols=87  Identities=16%  Similarity=0.117  Sum_probs=54.0

Q ss_pred             CceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC---CCCCCCC-CCCCCce------e-eecccCceeEEEEecCC--C
Q 004290           94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF---SGRGLDD-NAITPSA------L-YQCHTRRVKKLAVEVGN--P  160 (763)
Q Consensus        94 ~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~---~~~~~~~-~~~~~~~------~-~~~h~~~v~~l~~sp~~--~  160 (763)
                      ..|..|.++|+  |.+|+..|..|. .|-.+...   .+...+. ....|..      . ...+...|..+.|+|.+  +
T Consensus        85 f~v~~i~~n~~--g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   85 FEVHQISLNPT--GSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             eeEEEEEECCC--CCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            46788999999  798988887654 44444321   1100000 0001110      0 12345679999999963  4


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCC
Q 004290          161 HVVWSASEDGTLRQHDFRQGSSC  183 (763)
Q Consensus       161 ~~l~s~s~dg~i~iwd~~~~~~~  183 (763)
                      ..|+.-..|+++++||+...+.+
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~~p  184 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQHP  184 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCCCC
Confidence            67888889999999999866543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=92.36  E-value=25  Score=41.37  Aligned_cols=235  Identities=11%  Similarity=0.106  Sum_probs=116.6

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEc-------cCCCCceEEEEEeeCCCCcEEEEEeCC---CcEEEEECCCCCC--C-C
Q 004290           65 LISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSG--R-G  131 (763)
Q Consensus        65 Lasgs~D~~v~iWd~~~~~~~~~~~-------~~h~~~V~~v~~~p~~~~~~l~s~s~d---g~I~iwd~~~~~~--~-~  131 (763)
                      ++.....|.|++|=.+.........       ..-...|+..++.+..+|+.++.++.+   +.|++|.+.-.=+  . .
T Consensus        65 ~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~  144 (753)
T PF11635_consen   65 CIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQ  144 (753)
T ss_pred             EEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCcc
Confidence            4455677899999663222111110       123456777777744336666665555   8898887653211  1 1


Q ss_pred             CCCCCCCCceeee---------------------cccCceeEEEEec------CCCCEEEEEeC----CCcEEEEECCCC
Q 004290          132 LDDNAITPSALYQ---------------------CHTRRVKKLAVEV------GNPHVVWSASE----DGTLRQHDFRQG  180 (763)
Q Consensus       132 ~~~~~~~~~~~~~---------------------~h~~~v~~l~~sp------~~~~~l~s~s~----dg~i~iwd~~~~  180 (763)
                      .+. ...|...+.                     .....++.+.|-+      ..+.++++.+.    ...|..|.++..
T Consensus       145 ~d~-q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~  223 (753)
T PF11635_consen  145 IDP-QKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREE  223 (753)
T ss_pred             CCC-CcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEcc
Confidence            111 000111110                     0123566777754      12345555442    346999999886


Q ss_pred             CCCCCCCCCCcccc-eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004290          181 SSCPPAGSSHQECR-NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (763)
Q Consensus       181 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~  259 (763)
                      .......-.+.... ...........-...........|.+++.... +..++..-.||+|.++|..+.+.+........
T Consensus       224 ~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~  302 (753)
T PF11635_consen  224 QQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGE  302 (753)
T ss_pred             CcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence            53211100000000 00000000000000111112345677777665 56899999999999999999877655411111


Q ss_pred             CCCccccc-ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEE
Q 004290          260 PPPCVNYF-CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY  304 (763)
Q Consensus       260 ~~~~~~~~-~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~  304 (763)
                      ++..+... ..+-..+  .-. .+..++|||.+.-++.-..++.+.
T Consensus       303 ~~~~v~s~~~~Gf~fp--~~~-~~~~vafSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  303 PPNTVTSLFQAGFHFP--CIQ-PPLHVAFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             Cccccccccccccccc--cCC-CCceEEECcccceEEEEecCCCce
Confidence            11111111 1111111  001 356799999999999999888855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.26  E-value=5.4  Score=46.00  Aligned_cols=101  Identities=15%  Similarity=0.142  Sum_probs=60.2

Q ss_pred             CccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC---
Q 004290          214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---  290 (763)
Q Consensus       214 ~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd---  290 (763)
                      -...|..|.++|+ |.+++..|..|.+.+.=.+.......+......-.|........+.. ......|..+.|+|.   
T Consensus        83 ~~f~v~~i~~n~~-g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~-~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   83 PLFEVHQISLNPT-GSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT-SNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             CceeEEEEEECCC-CCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhcc-CCCCceEEEEEEcCCCCC
Confidence            3468999999997 78888888876655543332211111111111112222211111211 122336999999996   


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCccce
Q 004290          291 GEEVLLSYSGEHVYLMDVNHAGGRAM  316 (763)
Q Consensus       291 g~~l~~~s~d~~i~iwd~~~~~~~~~  316 (763)
                      +.+|++-+.|+++++||+.....+..
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~~p~~  186 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQHPWQ  186 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCCCCeE
Confidence            58999999999999999987554433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.15  E-value=0.56  Score=45.51  Aligned_cols=65  Identities=15%  Similarity=0.332  Sum_probs=51.2

Q ss_pred             cccCCCCEEEEecCCCcEEEEEcCcCcEEEE-------Ee-------cCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCC
Q 004290          634 FLGQRGDYIASGSDDGRWFIWEKQTGRLIKM-------LL-------GDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPS  699 (763)
Q Consensus       634 ~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~-------l~-------gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~  699 (763)
                      |+..+++||+.-..+|.++|||+.+++++-.       |.       .....|..+..+.+|.-|++-+. |....|+..
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~   95 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPD   95 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEeccc
Confidence            3677899999999999999999999886432       23       46678999999999987777764 667777654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA03098 kelch-like protein; Provisional

Probab=92.08  E-value=9.2  Score=43.14  Aligned_cols=106  Identities=6%  Similarity=-0.039  Sum_probs=52.6

Q ss_pred             CCCEEEEEeCCC------cEEEEeCCCCeEEEEEccCC-CCceEEEEEeeCCCCcEEEEEeCC-----CcEEEEECCCCC
Q 004290           61 KGSLLISGSDDT------HINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRFS  128 (763)
Q Consensus        61 ~g~~Lasgs~D~------~v~iWd~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~l~s~s~d-----g~I~iwd~~~~~  128 (763)
                      ++.+++.|+.++      .+..||..+.+... +..-. ...-.++.. -+  +.+++.|+.+     ..+..||..+..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~-~~--~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTV-FN--NRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEE-EC--CEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            456677776542      57788887765432 21111 111112222 23  5788888865     346778877543


Q ss_pred             CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC------CcEEEEECCCCC
Q 004290          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGS  181 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d------g~i~iwd~~~~~  181 (763)
                      .        .....+.... .-.+++..  ++.+++.||.+      ..+..||..+.+
T Consensus       370 W--------~~~~~lp~~r-~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        370 W--------REEPPLIFPR-YNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             e--------eeCCCcCcCC-ccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            2        1122221111 11122222  45677777632      357778876653

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.84  E-value=0.52  Score=31.70  Aligned_cols=33  Identities=15%  Similarity=0.090  Sum_probs=27.3

Q ss_pred             CceeEEEEecCCC--CEEEEEeCCCcEEEEECCCC
Q 004290          148 RRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQG  180 (763)
Q Consensus       148 ~~v~~l~~sp~~~--~~l~s~s~dg~i~iwd~~~~  180 (763)
                      +.|+++.|+|...  .+|+-+-.-|.|.++|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4689999998665  68888878899999999953

It contains a characteristic DLL sequence motif.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=91.51  E-value=27  Score=39.08  Aligned_cols=31  Identities=19%  Similarity=0.341  Sum_probs=26.4

Q ss_pred             CCCEEEEecCCCcEEEEEcCcCcEEEEEecC
Q 004290          638 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGD  668 (763)
Q Consensus       638 d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH  668 (763)
                      .+.+++.|+.||.++.+|.+||+++-..+-.
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            5567788899999999999999999877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.49  E-value=2.3  Score=46.08  Aligned_cols=120  Identities=17%  Similarity=0.144  Sum_probs=74.9

Q ss_pred             CceEEEEeCCC----CCEEEEEeCCCcEEEEeCC-----CCeEEEEE--ccCCCCce--EEEEEeeCCCCcEEEEEeCCC
Q 004290           51 GCVNAISWNSK----GSLLISGSDDTHINVWSYS-----SRKLLHSI--ETGHSANV--FCTKFVPETSDELVVSGAGDA  117 (763)
Q Consensus        51 ~~V~~l~fsp~----g~~Lasgs~D~~v~iWd~~-----~~~~~~~~--~~~h~~~V--~~v~~~p~~~~~~l~s~s~dg  117 (763)
                      ..|..+.|.|-    -..|+.....+.|.||.+.     +.+.+..-  .....-+|  ..+-|+|.  ...|+.-....
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk--~~iL~VLT~~d  134 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK--KAILTVLTARD  134 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC--CceEEEEecCc
Confidence            46999999994    2234444566899999875     22322211  01112222  46789999  57777666555


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~  181 (763)
                      .-.++++.....+         ++.-..-.+.|.|.+|.+++.+++++.+..=.-++||-....
T Consensus       135 vSV~~sV~~d~sr---------VkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKt  189 (671)
T PF15390_consen  135 VSVLPSVHCDSSR---------VKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKT  189 (671)
T ss_pred             eeEeeeeeeCCce---------EEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhh
Confidence            5556777653321         222224578899999999777777777766678899865543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.03  E-value=14  Score=39.22  Aligned_cols=213  Identities=13%  Similarity=0.080  Sum_probs=85.4

Q ss_pred             CCCEEEEEe-CCCcEEEEeCCC----CeEEEEEcc--CCC----CceEEEEEeeCCCCcEEEEEeC------CCcEEEEE
Q 004290           61 KGSLLISGS-DDTHINVWSYSS----RKLLHSIET--GHS----ANVFCTKFVPETSDELVVSGAG------DAEVRLFN  123 (763)
Q Consensus        61 ~g~~Lasgs-~D~~v~iWd~~~----~~~~~~~~~--~h~----~~V~~v~~~p~~~~~~l~s~s~------dg~I~iwd  123 (763)
                      +.++|+..+ ....|.|.|+.+    .+..+.+..  -+.    .....+.-.|+  |.+++|+-.      -|.+.+.|
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~--G~imIS~lGd~~G~g~Ggf~llD  163 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPD--GRIMISALGDADGNGPGGFVLLD  163 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS----EEEEEEEETTS-S--EEEEE-
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCC--ccEEEEeccCCCCCCCCcEEEEc
Confidence            356777666 678999999874    344444421  011    22233444566  778888532      24466777


Q ss_pred             CCCCCCCCCCCCCCCCceeeec---ccCceeEEEEecCCCCEEEEEeC--------------------CCcEEEEECCCC
Q 004290          124 LSRFSGRGLDDNAITPSALYQC---HTRRVKKLAVEVGNPHVVWSASE--------------------DGTLRQHDFRQG  180 (763)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~sp~~~~~l~s~s~--------------------dg~i~iwd~~~~  180 (763)
                      -++.          +.......   ....-+.+-|.| ..+.++|...                    -.++.+||+.+.
T Consensus       164 ~~tf----------~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r  232 (461)
T PF05694_consen  164 GETF----------EVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR  232 (461)
T ss_dssp             TTT------------EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred             Cccc----------cccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence            6642          22222221   123446677778 5567777542                    347889998887


Q ss_pred             CCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEe--CCCCcEEEEEeCCCcEEEEeC-CCCC----CCcc
Q 004290          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS--STRPHLLLVGGSDAFARLYDR-RMLP----PLTS  253 (763)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--p~~~~~l~sgs~Dg~i~iwd~-~~~~----~~~~  253 (763)
                      +..            ..+++...           ..-+..+.|.  |....-|+.+-....|..|-. ..++    .+..
T Consensus       233 ~~~------------Q~idLg~~-----------g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~  289 (461)
T PF05694_consen  233 KLL------------QTIDLGEE-----------GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVID  289 (461)
T ss_dssp             EEE------------EEEES-TT-----------EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEE
T ss_pred             cEe------------eEEecCCC-----------CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEE
Confidence            633            22222211           1123334443  332223333333444444433 3222    0101


Q ss_pred             cCCCCCCCCccccc-ccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCCcc
Q 004290          254 CQKRMSPPPCVNYF-CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGR  314 (763)
Q Consensus       254 ~~~~~~~~~~~~~~-~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~~~  314 (763)
                      +     |+..+... .|.-+...+.-..-|+.+.+|.|.++|..+.. +|.|+.||+.....+
T Consensus       290 i-----p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  290 I-----PAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             E-------EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             C-----CCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence            1     00000000 00000001111124899999999999998887 999999999996644

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.89  E-value=1  Score=30.38  Aligned_cols=32  Identities=16%  Similarity=0.277  Sum_probs=26.7

Q ss_pred             CceEEEEeCCCC---CEEEEEeCCCcEEEEeCCCC
Q 004290           51 GCVNAISWNSKG---SLLISGSDDTHINVWSYSSR   82 (763)
Q Consensus        51 ~~V~~l~fsp~g---~~Lasgs~D~~v~iWd~~~~   82 (763)
                      +.|.+++|+|+.   .+||-+-.-+.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            478999999844   58888888899999999853

It contains a characteristic DLL sequence motif.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.68  E-value=3.3  Score=48.25  Aligned_cols=156  Identities=16%  Similarity=0.079  Sum_probs=91.1

Q ss_pred             CceEEEEEeeCCCCcEEE--EEeCCCcEEEEECCCCCCCCCCCCCCCCc---eeeecccCceeEEEEecCCCCEEEEEeC
Q 004290           94 ANVFCTKFVPETSDELVV--SGAGDAEVRLFNLSRFSGRGLDDNAITPS---ALYQCHTRRVKKLAVEVGNPHVVWSASE  168 (763)
Q Consensus        94 ~~V~~v~~~p~~~~~~l~--s~s~dg~I~iwd~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~l~~sp~~~~~l~s~s~  168 (763)
                      .++..+...++  +...+  ..+.+-.|..||++........  ...++   ...........++.|+|.-+...+.+..
T Consensus       101 ~pi~~~v~~~D--~t~s~v~~tsng~~v~~fD~~~fs~s~~~--~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~  176 (1405)
T KOG3630|consen  101 IPIVIFVCFHD--ATDSVVVSTSNGEAVYSFDLEEFSESRYE--TTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS  176 (1405)
T ss_pred             ccceEEEeccC--CceEEEEEecCCceEEEEehHhhhhhhhh--hccccccccchhccccccccccccCCccchhhhhcc
Confidence            45555556666  34333  3344457899999863221100  00111   1111223456788999866667778888


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC
Q 004290          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (763)
Q Consensus       169 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~  248 (763)
                      |+.|++.-+......                        +.. -.-....++++|+|. |+.+++|-..|++.-|-..- 
T Consensus       177 dlsl~V~~~~~~~~~------------------------v~s-~p~t~~~Tav~WSpr-GKQl~iG~nnGt~vQy~P~l-  229 (1405)
T KOG3630|consen  177 DLSLRVKSTKQLAQN------------------------VTS-FPVTNSQTAVLWSPR-GKQLFIGRNNGTEVQYEPSL-  229 (1405)
T ss_pred             ccchhhhhhhhhhhh------------------------hcc-cCcccceeeEEeccc-cceeeEecCCCeEEEeeccc-
Confidence            999998876544311                        000 112456899999996 89999999999998886542 


Q ss_pred             CCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEE
Q 004290          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS  297 (763)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~  297 (763)
                      +....++.            |..     .....|.+|+|-....+|++=
T Consensus       230 eik~~ip~------------Pp~-----~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  230 EIKSEIPE------------PPV-----EENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             ceeecccC------------CCc-----CCCcceeEEEEecceeEEEEe
Confidence            21111110            000     112369999998877766543

>PHA02790 Kelch-like protein; Provisional

Probab=90.65  E-value=18  Score=40.10  Aligned_cols=105  Identities=10%  Similarity=-0.055  Sum_probs=52.3

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCeEEEEEccCCCCc-eEEEEEeeCCCCcEEEEEeCC--CcEEEEECCCCCCCCC
Q 004290           61 KGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGD--AEVRLFNLSRFSGRGL  132 (763)
Q Consensus        61 ~g~~Lasgs~D~-----~v~iWd~~~~~~~~~~~~~h~~~-V~~v~~~p~~~~~~l~s~s~d--g~I~iwd~~~~~~~~~  132 (763)
                      ++.+++.|+.++     .+..||..+++....- .-.... -.++. .-+  +.+.+.|+.+  ..+..||..+..    
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~-~m~~~r~~~~~v-~~~--~~iYviGG~~~~~sve~ydp~~n~----  342 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP-PMNSPRLYASGV-PAN--NKLYVVGGLPNPTSVERWFHGDAA----  342 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECC-CCCchhhcceEE-EEC--CEEEEECCcCCCCceEEEECCCCe----
Confidence            456667787643     4667888776543221 111111 11222 234  5777777754  357788876422    


Q ss_pred             CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC---cEEEEECCCC
Q 004290          133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQG  180 (763)
Q Consensus       133 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg---~i~iwd~~~~  180 (763)
                          +..+..+....... +++..  ++.+.+.||.++   .+..||.++.
T Consensus       343 ----W~~~~~l~~~r~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        343 ----WVNMPSLLKPRCNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             ----EEECCCCCCCCccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCC
Confidence                22222232111111 22222  557777777653   3566776654

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=89.74  E-value=7.6  Score=37.08  Aligned_cols=153  Identities=11%  Similarity=0.109  Sum_probs=83.4

Q ss_pred             cCceEEEEeCCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           50 QGCVNAISWNSKGSLLISGSDD---------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D---------~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      +...+.-..+|+|++.+---.|         |.++.|-...  .+..+ ...-.--+.++|+.+. ..+.+.-+.+-+|.
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i-~~~v~IsNgl~Wd~d~-K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELI-WNCVGISNGLAWDSDA-KKFYYIDSLNYEVD  183 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--Cceee-ehhccCCccccccccC-cEEEEEccCceEEe
Confidence            3456666778999985422222         2233332211  11111 1111223578898774 45666677788898


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeec----ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQC----HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  196 (763)
                      -||.....+.......   +..++.    .....-.++..- ++++++++-..++|...|..+++.+.            
T Consensus       184 a~dyd~~tG~~snr~~---i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~L~------------  247 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKV---IFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKILL------------  247 (310)
T ss_pred             eeecCCCcccccCcce---eEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcEEE------------
Confidence            8996654444321111   111111    111223455554 66888888888999999999987431            


Q ss_pred             EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe
Q 004290          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG  235 (763)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs  235 (763)
                        .        +   .--+..|+|++|---+-.+|++.+
T Consensus       248 --e--------i---klPt~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  248 --E--------I---KLPTPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             --E--------E---EcCCCceEEEEecCCCccEEEEEe
Confidence              0        0   111457899999754334555544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.84  E-value=27  Score=34.87  Aligned_cols=218  Identities=12%  Similarity=0.099  Sum_probs=114.0

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEE--EEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~  126 (763)
                      +...+.++-|...+.+-..++..  .-+|..+=...+  +.+ .+-...|.++.|+|+  .+.|++......-.+|=-..
T Consensus        42 ~~~~f~~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi-~g~~~nvS~LTynp~--~rtLFav~n~p~~iVElt~~  116 (316)
T COG3204          42 ATRVFPCAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPI-LGETANVSSLTYNPD--TRTLFAVTNKPAAIVELTKE  116 (316)
T ss_pred             cceeeeeEEEeccccccccccch--hhhccCCceEEEecccc-ccccccccceeeCCC--cceEEEecCCCceEEEEecC
Confidence            33444454444433333344443  445554322111  113 355566999999999  46666666555555554443


Q ss_pred             CCCCCCCCCCCCCceee--ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          127 FSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       127 ~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                      ++          .+.++  .+ -...-.|.+.- ++.+.++--.++.+.++.+.......              ..... 
T Consensus       117 Gd----------lirtiPL~g-~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~~~--------------~~~~~-  169 (316)
T COG3204         117 GD----------LIRTIPLTG-FSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTTVI--------------SAKVQ-  169 (316)
T ss_pred             Cc----------eEEEecccc-cCChhHeEEec-CCEEEEEehhcceEEEEEEcCCccEE--------------eccce-
Confidence            22          23332  22 12234566665 54566666668888888777654221              00000 


Q ss_pred             eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (763)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  284 (763)
                      ...+..........-.++|+|. ...|..+-...-++||................+...           ....-..|.+
T Consensus       170 ~i~L~~~~k~N~GfEGlA~d~~-~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~-----------~~~f~~DvSg  237 (316)
T COG3204         170 KIPLGTTNKKNKGFEGLAWDPV-DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD-----------RDLFVLDVSG  237 (316)
T ss_pred             EEeccccCCCCcCceeeecCCC-CceEEEEEccCCcEEEEEecCCcccccccccCcccc-----------cceEeecccc
Confidence            1122233333556778999997 467777877788888877643311111111001000           0000113788


Q ss_pred             EEEcCC-CCEEEEEeCCCeEEEEECCC
Q 004290          285 VTFSPN-GEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       285 v~~spd-g~~l~~~s~d~~i~iwd~~~  310 (763)
                      +.|.+. +..|+.+..++.+.-.|...
T Consensus       238 l~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         238 LEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ceecCCCCcEEEEecCCceEEEEecCC
Confidence            889875 45555555577777777665

>PHA03098 kelch-like protein; Provisional

Probab=88.79  E-value=13  Score=41.81  Aligned_cols=65  Identities=14%  Similarity=0.144  Sum_probs=34.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC------CcEEEEECCCCC
Q 004290           61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSRFS  128 (763)
Q Consensus        61 ~g~~Lasgs~D-----~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d------g~I~iwd~~~~~  128 (763)
                      ++++.+.||.+     ..+..||..+.+-...-...+...-.+++. -+  +.+++.|+.+      ..+..||+.+..
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~--~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VN--NLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-EC--CEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            56777888765     347778887765322110011111112222 23  5777777742      457888887643

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.01  E-value=4.2  Score=43.32  Aligned_cols=100  Identities=11%  Similarity=0.106  Sum_probs=58.7

Q ss_pred             ccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC---
Q 004290          215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG---  291 (763)
Q Consensus       215 ~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg---  291 (763)
                      ...|..+..++. |..++-.+.+|.+.++=.+....-..+........|...-....+... .....+..++|+|+.   
T Consensus       103 ~feV~~vl~s~~-GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts-s~~ltl~Qa~WHP~S~~D  180 (741)
T KOG4460|consen  103 LFEVYQVLLSPT-GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS-STSLTLKQAAWHPSSILD  180 (741)
T ss_pred             eEEEEEEEecCC-CceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc-CCceeeeeccccCCccCC
Confidence            456788889997 678888889998877653332221111111000011110000011111 122247889999975   


Q ss_pred             CEEEEEeCCCeEEEEECCCCCccce
Q 004290          292 EEVLLSYSGEHVYLMDVNHAGGRAM  316 (763)
Q Consensus       292 ~~l~~~s~d~~i~iwd~~~~~~~~~  316 (763)
                      ..|+.-+.|++|++||+........
T Consensus       181 ~hL~iL~sdnviRiy~lS~~telyl  205 (741)
T KOG4460|consen  181 PHLVLLTSDNVIRIYSLSEPTELYL  205 (741)
T ss_pred             ceEEEEecCcEEEEEecCCcchhhc
Confidence            6788899999999999988654433

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=87.91  E-value=34  Score=34.95  Aligned_cols=115  Identities=17%  Similarity=0.222  Sum_probs=58.1

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~  126 (763)
                      +-.+.++.+.-++||+++++++.-....-||.-... ..+.  ..-...|..|.|.|+  +.+.+.+ ..|.|++=+...
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--r~~~~riq~~gf~~~--~~lw~~~-~Gg~~~~s~~~~  216 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--RNSSRRIQSMGFSPD--GNLWMLA-RGGQIQFSDDPD  216 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TT--S-EEEEE-TTTEEEEEE-TT
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc--cCccceehhceecCC--CCEEEEe-CCcEEEEccCCC
Confidence            345778899999999999888775556688864322 2222  345688999999999  5555544 888888877221


Q ss_pred             CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004290          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ  174 (763)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~i  174 (763)
                      . ....    .+++.....-.-.+..|+|.+ +..+.+ ++..|++.+
T Consensus       217 ~-~~~w----~~~~~~~~~~~~~~ld~a~~~-~~~~wa-~gg~G~l~~  257 (302)
T PF14870_consen  217 D-GETW----SEPIIPIKTNGYGILDLAYRP-PNEIWA-VGGSGTLLV  257 (302)
T ss_dssp             E-EEEE-------B-TTSS--S-EEEEEESS-SS-EEE-EESTT-EEE
T ss_pred             C-cccc----ccccCCcccCceeeEEEEecC-CCCEEE-EeCCccEEE
Confidence            0 0000    001111112233478899987 445555 445566544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=87.77  E-value=6.5  Score=41.97  Aligned_cols=86  Identities=12%  Similarity=0.133  Sum_probs=58.9

Q ss_pred             hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee--CCCC--------
Q 004290           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP--ETSD--------  107 (763)
Q Consensus        38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p--~~~~--------  107 (763)
                      ........|......+.+|..+|++++.|+...=|.|.|+|+.++..++.. +|-.+.=  +.|..  +...        
T Consensus       295 ~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW-KGYRdAq--c~wi~~~~~~~~~~~~~~~  371 (415)
T PF14655_consen  295 APLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW-KGYRDAQ--CGWIEVPEEGDRDRSNSNS  371 (415)
T ss_pred             cccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh-ccCccce--EEEEEeecccccccccccc
Confidence            344555667777788999999999998888777799999999998877666 4544321  12211  1101        


Q ss_pred             ---------cEEEEEeCCCcEEEEECCC
Q 004290          108 ---------ELVVSGAGDAEVRLFNLSR  126 (763)
Q Consensus       108 ---------~~l~s~s~dg~I~iwd~~~  126 (763)
                               -+++-+-.-|.|.||.+++
T Consensus       372 ~~~~~~~~l~LvIyaprRg~lEvW~~~~  399 (415)
T PF14655_consen  372 PKSSSRFALFLVIYAPRRGILEVWSMRQ  399 (415)
T ss_pred             cCCCCcceEEEEEEeccCCeEEEEecCC
Confidence                     1344566788888888885

>PRK13616 lipoprotein LpqB; Provisional

Probab=87.76  E-value=16  Score=41.37  Aligned_cols=113  Identities=11%  Similarity=0.031  Sum_probs=61.8

Q ss_pred             eEEEEeCCCCCEEEEEeCC-CcEEEE-----------eCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           53 VNAISWNSKGSLLISGSDD-THINVW-----------SYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        53 V~~l~fsp~g~~Lasgs~D-~~v~iW-----------d~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      .+.-.|+|+|+.|++.+.. ..+++.           ++..+....    ...+.|..+.|+|+  |..++... ++.|.
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpD--G~RiA~i~-~g~v~  471 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRD--GVRAAMII-GGKVY  471 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCC--CCEEEEEE-CCEEE
Confidence            7788999999888877533 223333           333222211    22457999999999  67777665 57777


Q ss_pred             EEECCCC-CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004290          121 LFNLSRF-SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (763)
Q Consensus       121 iwd~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~  177 (763)
                      +--+... .+... .  ..+.....+-...+.++.|.+ ++.++ .+..++...+|-+
T Consensus       472 Va~Vvr~~~G~~~-l--~~~~~l~~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        472 LAVVEQTEDGQYA-L--TNPREVGPGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             EEEEEeCCCCcee-e--cccEEeecccCCccccceEec-CCEEE-EEecCCCCceEEE
Confidence            7443331 12110 0  111112223344468899998 44444 5554444444543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=87.43  E-value=16  Score=38.82  Aligned_cols=73  Identities=18%  Similarity=0.114  Sum_probs=41.8

Q ss_pred             CceEEEEEeeCCCCcEEEEEe-----------CCC-cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCC
Q 004290           94 ANVFCTKFVPETSDELVVSGA-----------GDA-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH  161 (763)
Q Consensus        94 ~~V~~v~~~p~~~~~~l~s~s-----------~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  161 (763)
                      .....|+|.++  |+++++-.           ..+ .|.+++-..+.+..      .....+.......+.|++.+ ++ 
T Consensus        14 ~~P~~ia~d~~--G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~------d~~~vfa~~l~~p~Gi~~~~-~G-   83 (367)
T TIGR02604        14 RNPIAVCFDER--GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY------DKSNVFAEELSMVTGLAVAV-GG-   83 (367)
T ss_pred             CCCceeeECCC--CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc------ceeEEeecCCCCccceeEec-CC-
Confidence            45678899988  77777653           223 67777665444432      12334433445678899988 54 


Q ss_pred             EEEEEeCCCcEEEE-ECC
Q 004290          162 VVWSASEDGTLRQH-DFR  178 (763)
Q Consensus       162 ~l~s~s~dg~i~iw-d~~  178 (763)
                      ++++ ... .|..| |..
T Consensus        84 lyV~-~~~-~i~~~~d~~   99 (367)
T TIGR02604        84 VYVA-TPP-DILFLRDKD   99 (367)
T ss_pred             EEEe-CCC-eEEEEeCCC
Confidence            5543 443 34433 443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=86.97  E-value=58  Score=36.55  Aligned_cols=60  Identities=13%  Similarity=0.113  Sum_probs=42.0

Q ss_pred             CCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccC
Q 004290          648 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG  708 (763)
Q Consensus       648 Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~  708 (763)
                      -|.+.=||+.||+.+=.........-+. ..-.+.+++.++.||.++.+|.++++++..++
T Consensus       440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~  499 (527)
T TIGR03075       440 MGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK  499 (527)
T ss_pred             ceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence            4678889999999887665332212221 11244577778889999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=86.79  E-value=9.9  Score=40.22  Aligned_cols=130  Identities=15%  Similarity=0.182  Sum_probs=67.3

Q ss_pred             EEEEeCCCCCEEEEEeC--------------------CCcEEEEeCCCCeEEEEEccCCCC-ceEEEEEeeCCC-CcEEE
Q 004290           54 NAISWNSKGSLLISGSD--------------------DTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETS-DELVV  111 (763)
Q Consensus        54 ~~l~fsp~g~~Lasgs~--------------------D~~v~iWd~~~~~~~~~~~~~h~~-~V~~v~~~p~~~-~~~l~  111 (763)
                      ..+.|.|..+.++|...                    -.++.+||+.+.+.++++.-+..+ .+..++|..+.+ ..-++
T Consensus       184 YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFv  263 (461)
T PF05694_consen  184 YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFV  263 (461)
T ss_dssp             --EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEE
T ss_pred             CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEE
Confidence            45556676677777643                    357999999999999998655444 467899986642 23455


Q ss_pred             EEeCCCcEEEEECCC-CCCCCCCCC-----------CCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290          112 SGAGDAEVRLFNLSR-FSGRGLDDN-----------AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (763)
Q Consensus       112 s~s~dg~I~iwd~~~-~~~~~~~~~-----------~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~  179 (763)
                      .+....+|..|--.. +........           ....++.+..-..-|+.|..|.++..+.+++-.+|.|+.||+..
T Consensus       264 g~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  264 GCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             EEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             EEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence            555566666654422 111000000           00011222223456899999997766666777799999999998


Q ss_pred             CCCC
Q 004290          180 GSSC  183 (763)
Q Consensus       180 ~~~~  183 (763)
                      ....
T Consensus       344 P~~P  347 (461)
T PF05694_consen  344 PFNP  347 (461)
T ss_dssp             TTS-
T ss_pred             CCCC
Confidence            7654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=86.78  E-value=32  Score=34.11  Aligned_cols=142  Identities=11%  Similarity=0.112  Sum_probs=77.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004290           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (763)
Q Consensus        62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  141 (763)
                      +++..-.-.++...+||..+-+.+.++..  .+.=+.++  .+  +..|+.+.....|+++|..+..          ...
T Consensus       100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y--~~EGWGLt--~d--g~~Li~SDGS~~L~~~dP~~f~----------~~~  163 (264)
T PF05096_consen  100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPY--PGEGWGLT--SD--GKRLIMSDGSSRLYFLDPETFK----------EVR  163 (264)
T ss_dssp             TEEEEEESSSSEEEEEETTTTEEEEEEE---SSS--EEE--EC--SSCEEEE-SSSEEEEE-TTT-S----------EEE
T ss_pred             CEEEEEEecCCeEEEEccccceEEEEEec--CCcceEEE--cC--CCEEEEECCccceEEECCcccc----------eEE
Confidence            34444556789999999999998888832  33445666  33  4566666667889999987632          122


Q ss_pred             eeec--c---cCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeecc---CCCC
Q 004290          142 LYQC--H---TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA---DPPK  213 (763)
Q Consensus       142 ~~~~--h---~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  213 (763)
                      .+.-  .   -..++-|.|.  ++.+.+=.-....|...|..+++..            -.+++..-. ....   ....
T Consensus       164 ~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~------------~~iDls~L~-~~~~~~~~~~~  228 (264)
T PF05096_consen  164 TIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVV------------GWIDLSGLR-PEVGRDKSRQP  228 (264)
T ss_dssp             EEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEE------------EEEE-HHHH-HHHTSTTST--
T ss_pred             EEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEE------------EEEEhhHhh-hcccccccccc
Confidence            2211  1   2345667775  4556655556667777887777521            222221100 0000   0111


Q ss_pred             CccceEEEEEeCCCCcEEEEE
Q 004290          214 QTLSLKSCDISSTRPHLLLVG  234 (763)
Q Consensus       214 ~~~~v~~i~~~p~~~~~l~sg  234 (763)
                      .....+.||++|..+.+++||
T Consensus       229 ~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  229 DDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TTS-EEEEEEETTTTEEEEEE
T ss_pred             cCCeeEeEeEeCCCCEEEEEe
Confidence            246789999999866666666

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=86.59  E-value=15  Score=40.25  Aligned_cols=158  Identities=10%  Similarity=0.144  Sum_probs=85.1

Q ss_pred             cCceEEEEeCCCCCEE-EEEe--CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCC--CcEEEEEeCCCcEEEEEC
Q 004290           50 QGCVNAISWNSKGSLL-ISGS--DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS--DELVVSGAGDAEVRLFNL  124 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~L-asgs--~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~--~~~l~s~s~dg~I~iwd~  124 (763)
                      -.+|..++|. ||+.+ .+.-  .+|.++.=|   ...+..|     ..|..+.|.|-..  -..|+.......|.+|-+
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF-----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL   89 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF-----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL   89 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc-----ceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence            3588999997 56544 3432  233433322   2234444     5689999998521  224555566789999998


Q ss_pred             CCCCCCCCCCCCCCCceeeeccc-----CceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          125 SRFSGRGLDDNAITPSALYQCHT-----RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      .......   +  +.+..-.++-     --.....|+|. ..+++.-.....-.+++++...            ..+..|
T Consensus        90 ~~s~~e~---~--K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT~~dvSV~~sV~~d~------------srVkaD  151 (671)
T PF15390_consen   90 CPSTTER---N--KLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLTARDVSVLPSVHCDS------------SRVKAD  151 (671)
T ss_pred             ccCcccc---c--cceeeeeeeccCCcccCCCcccccCC-CceEEEEecCceeEeeeeeeCC------------ceEEEe
Confidence            7322111   0  1111111111     11245679994 4566555444443455655443            223333


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~  246 (763)
                      +.            ..+.|.|.+|.+|+.+++++.++.=.-+|||-.
T Consensus       152 i~------------~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  152 IK------------TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cc------------CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            32            346789999999854444444554456788854

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=86.30  E-value=30  Score=34.44  Aligned_cols=116  Identities=16%  Similarity=0.191  Sum_probs=67.2

Q ss_pred             ceEEEEeCCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE-CCCCCC
Q 004290           52 CVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN-LSRFSG  129 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs-~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd-~~~~~~  129 (763)
                      .+.+.+++++|..+|... .++.-.||-...+........+  ..+..-.|.++  +...+....+...+++. ...+..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~--g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPD--GWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCC--CCEEEEEcCCCceEEEEecCCCcc
Confidence            688999999999887655 2233334433333333333222  36778889998  67777777677777774 222221


Q ss_pred             CCCCCCCCCCcee-eecccCceeEEEEecCCCCEEEEE--eCCCcEEEEECCC
Q 004290          130 RGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFRQ  179 (763)
Q Consensus       130 ~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~s~--s~dg~i~iwd~~~  179 (763)
                      .        .... ...-...|..+.++|++.++.+..  ..++.|.+=-+..
T Consensus       101 ~--------~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r  145 (253)
T PF10647_consen  101 E--------PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR  145 (253)
T ss_pred             e--------eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence            1        1111 111112899999999665544443  2356777765543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK10115 protease 2; Provisional

Probab=86.29  E-value=73  Score=37.09  Aligned_cols=71  Identities=3%  Similarity=-0.035  Sum_probs=45.5

Q ss_pred             ceEEEEeCCCCCEEEEEe-----CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-C-----CcEE
Q 004290           52 CVNAISWNSKGSLLISGS-----DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-D-----AEVR  120 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs-----~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-d-----g~I~  120 (763)
                      .+..+.|+|||++||.+.     ....|++-|+.+|+.+.....+ .  -..++|.++  ++.|+.... +     ..|+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~D--~~~~~y~~~~~~~~~~~~v~  202 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWAND--SWTFYYVRKHPVTLLPYQVW  202 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEeeC--CCEEEEEEecCCCCCCCEEE
Confidence            477789999999888653     2345889999888644332111 1  156999998  454444333 2     3577


Q ss_pred             EEECCCC
Q 004290          121 LFNLSRF  127 (763)
Q Consensus       121 iwd~~~~  127 (763)
                      .+++.++
T Consensus       203 ~h~lgt~  209 (686)
T PRK10115        203 RHTIGTP  209 (686)
T ss_pred             EEECCCC
Confidence            7777764

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=86.25  E-value=51  Score=37.75  Aligned_cols=160  Identities=10%  Similarity=0.078  Sum_probs=94.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEE------EEc---------------cCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           62 GSLLISGSDDTHINVWSYSSRKLLH------SIE---------------TGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        62 g~~Lasgs~D~~v~iWd~~~~~~~~------~~~---------------~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      ..+|+.|. .+.|.||++..-....      .+.               ....-.|+.|...--++...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            67787766 4799999986432211      110               0011235555554433367899999999999


Q ss_pred             EEECCCCC-----C-----CCCCCCCCCCceeeecccCceeEEEEe--cCCCCEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004290          121 LFNLSRFS-----G-----RGLDDNAITPSALYQCHTRRVKKLAVE--VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (763)
Q Consensus       121 iwd~~~~~-----~-----~~~~~~~~~~~~~~~~h~~~v~~l~~s--p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  188 (763)
                      +|.+..--     .     .........|...+. -...+.+++++  . ..++||+++....|.||-........... 
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~~~-  204 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFYHV-  204 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEEEEEEeccccccccc-
Confidence            99774210     0     000001123334343 34589999998  5 55788888888888888665432110000 


Q ss_pred             CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC--Cc---EEEEEeCCCcEEEEeCC
Q 004290          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PH---LLLVGGSDAFARLYDRR  246 (763)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~--~~---~l~sgs~Dg~i~iwd~~  246 (763)
                                       .    ...+..-|.+|+|-++.  +.   ++++++-.|.+.+|++.
T Consensus       205 -----------------~----s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  205 -----------------P----SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             -----------------c----ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence                             0    00134457788887753  22   78888999999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=86.25  E-value=76  Score=37.22  Aligned_cols=78  Identities=13%  Similarity=0.243  Sum_probs=53.5

Q ss_pred             ccCC-CCEEEEec----------CCCcEEEEEcCcCcEEEEEecC--CcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCC
Q 004290          635 LGQR-GDYIASGS----------DDGRWFIWEKQTGRLIKMLLGD--EAVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS  701 (763)
Q Consensus       635 ~s~d-~~~l~sgs----------~Dg~i~iWd~~tg~~~~~l~gH--~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~  701 (763)
                      |..| +.|++.|.          ..|+|.|+.+..+.-++.+.-|  ++.|.++.- -++++||  |+...||++++..+
T Consensus       782 ~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA--~In~~vrLye~t~~  858 (1096)
T KOG1897|consen  782 FTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLA--GINQSVRLYEWTTE  858 (1096)
T ss_pred             ecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEE--ecCcEEEEEEcccc
Confidence            4555 77888875          3688999998885555555444  344444432 2466776  46789999999999


Q ss_pred             CCccccCCCCCCCh
Q 004290          702 VPSIVSGGAAGPDT  715 (763)
Q Consensus       702 ~~~~~~~g~~~~~~  715 (763)
                      ..+.....|..++.
T Consensus       859 ~eLr~e~~~~~~~~  872 (1096)
T KOG1897|consen  859 RELRIECNISNPII  872 (1096)
T ss_pred             ceehhhhcccCCeE
Confidence            88877776666654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=85.98  E-value=41  Score=33.89  Aligned_cols=124  Identities=10%  Similarity=0.065  Sum_probs=72.5

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCC-------CCeEEEEEcc--C--CCCceEEEEEeeCC----------CCcEE
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYS-------SRKLLHSIET--G--HSANVFCTKFVPET----------SDELV  110 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~-------~~~~~~~~~~--~--h~~~V~~v~~~p~~----------~~~~l  110 (763)
                      .-+.|+|+|.+.+.++...-+...+||..       ....+.++..  +  .....+.+.|+..+          ....+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            35689999999999998888999999986       1223444421  1  23467788887542          01247


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee-cccCcee-EEEEecC-CCCEEEEE-eCCCcEEEEECCCC
Q 004290          111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVK-KLAVEVG-NPHVVWSA-SEDGTLRQHDFRQG  180 (763)
Q Consensus       111 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~-~l~~sp~-~~~~l~s~-s~dg~i~iwd~~~~  180 (763)
                      +.+++||+|.-|.........     ......+. .-.+.|+ .+++... .+.+|+.+ -..++|.+||-.-.
T Consensus       104 if~tEdGTisaW~p~v~~t~~-----~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~  172 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRM-----TRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR  172 (336)
T ss_pred             EEEeCCceEEeecCcCCcccc-----cccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence            888999999999965321100     00011121 1123333 3555432 23444444 46789999985443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=85.90  E-value=41  Score=33.85  Aligned_cols=161  Identities=17%  Similarity=0.199  Sum_probs=82.5

Q ss_pred             CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (763)
Q Consensus       107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  186 (763)
                      ++.|+.|..+| |.+++.....         .+....  +...|..|...|. -+.++.-+ |+.++++++..-......
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~---------~~~~i~--~~~~I~ql~vl~~-~~~llvLs-d~~l~~~~L~~l~~~~~~   72 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPS---------KPTRIL--KLSSITQLSVLPE-LNLLLVLS-DGQLYVYDLDSLEPVSTS   72 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCc---------cceeEe--ecceEEEEEEecc-cCEEEEEc-CCccEEEEchhhcccccc
Confidence            68899999888 9999983211         112222  3334999999884 45554544 599999999876543211


Q ss_pred             CCCCcccceEEEecCCCceeeccCCCCCccceEEEE-EeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccc
Q 004290          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD-ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (763)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  265 (763)
                      ....... .          ............+...+ -....+...++......|.+|..........        ...+
T Consensus        73 ~~~~~~~-~----------~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~--------~~~k  133 (275)
T PF00780_consen   73 APLAFPK-S----------RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS--------KLLK  133 (275)
T ss_pred             ccccccc-c----------ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc--------ceeE
Confidence            0000000 0          00000001112233333 1122233444444455888888775311100        0001


Q ss_pred             ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       266 ~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      .   ..+.      ..+..++|.  +..|+.|..++ ..+.|+.++.
T Consensus       134 e---~~lp------~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~  168 (275)
T PF00780_consen  134 E---ISLP------DPPSSIAFL--GNKICVGTSKG-FYLIDLNTGS  168 (275)
T ss_pred             E---EEcC------CCcEEEEEe--CCEEEEEeCCc-eEEEecCCCC
Confidence            1   1111      158889998  55677776554 7888888743

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.06  E-value=5  Score=46.90  Aligned_cols=116  Identities=8%  Similarity=-0.011  Sum_probs=75.9

Q ss_pred             CceEEEEeCCCCCEEEEE--eCCCcEEEEeCCCCeE--------EEE--EccCCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004290           51 GCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKL--------LHS--IETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasg--s~D~~v~iWd~~~~~~--------~~~--~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~  118 (763)
                      -.|..+...+|++..+..  +.+-.|..||+++-..        ++.  ........+.++.|+|.- ....+.+..|+.
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-p~n~av~l~dls  179 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-PLNSAVDLSDLS  179 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-cchhhhhccccc
Confidence            356666667787765543  3444788999874211        111  101223456789999975 456777788999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~  178 (763)
                      |++.-+......         ...+ .....+++++|+| .+..++.|-..|++..|-..
T Consensus       180 l~V~~~~~~~~~---------v~s~-p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~  228 (1405)
T KOG3630|consen  180 LRVKSTKQLAQN---------VTSF-PVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS  228 (1405)
T ss_pred             hhhhhhhhhhhh---------hccc-CcccceeeEEecc-ccceeeEecCCCeEEEeecc
Confidence            999887753211         1222 2456789999999 56788899999999998654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=84.73  E-value=26  Score=35.94  Aligned_cols=123  Identities=9%  Similarity=0.076  Sum_probs=70.8

Q ss_pred             CceEEEEeCCCCCEEEEEeC---------CCcEEEEeCC-CCeEEEEEccCCCCceEEEEEeeCCCCcEEEEE-eCCCcE
Q 004290           51 GCVNAISWNSKGSLLISGSD---------DTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDELVVSG-AGDAEV  119 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~---------D~~v~iWd~~-~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~-s~dg~I  119 (763)
                      ..-+.+...|+|.+.++...         -..-.||-+. .+..+..+ ..+-..-+.|+|+|+  ++.|..+ +..+.|
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~-~~~~~~~NGla~SpD--g~tly~aDT~~~~i  187 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL-DDDLTIPNGLAFSPD--GKTLYVADTPANRI  187 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee-cCcEEecCceEECCC--CCEEEEEeCCCCeE
Confidence            34667888889987775433         0112344444 44555444 455566789999999  5555554 445778


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-cEEEEECCCCC
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGS  181 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-~i~iwd~~~~~  181 (763)
                      .-|++....+...  + ......+....+..-.++... ++.+.+++...| .|.+|+.. ++
T Consensus       188 ~r~~~d~~~g~~~--~-~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~  245 (307)
T COG3386         188 HRYDLDPATGPIG--G-RRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GK  245 (307)
T ss_pred             EEEecCcccCccC--C-cceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-Cc
Confidence            8887763111110  0 011222233456677777776 455554444444 89999877 54

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.63  E-value=0.19  Score=52.51  Aligned_cols=151  Identities=9%  Similarity=0.067  Sum_probs=97.2

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~  128 (763)
                      |-..-....|-|.+.-|+.++.+..|..||-. ++.....  .-++....++|..+. +..++.+-..+.+.+||+.+..
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~--n~tg~aldm~wDkeg-dvlavlAek~~piylwd~n~ey  108 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILEL--NPTGKALDMAWDKEG-DVLAVLAEKTGPIYLWDVNSEY  108 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhhhh-cceeccc--CCchhHhhhhhcccc-chhhhhhhcCCCeeechhhhhh
Confidence            33444456778877778888888999999954 3433333  345567788888873 4455666778999999998632


Q ss_pred             CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (763)
                      .+.        +..-..|....  +.|++ +...++.+...|.+.+++..+.+...                        
T Consensus       109 tqq--------LE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~ii------------------------  153 (615)
T KOG2247|consen  109 TQQ--------LESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRII------------------------  153 (615)
T ss_pred             HHH--------HhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchhhhh------------------------
Confidence            111        11111122222  68888 66677778888999999987765331                        


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEE
Q 004290          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  241 (763)
Q Consensus       209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~  241 (763)
                       ....|...++++++.+.  ++.+.++.|..+.
T Consensus       154 -v~Gkh~RRgtq~av~lE--d~vil~dcd~~L~  183 (615)
T KOG2247|consen  154 -VMGKHQRRGTQIAVTLE--DYVILCDCDNTLS  183 (615)
T ss_pred             -hhcccccceeEEEeccc--ceeeecCcHHHHH
Confidence             11125667888889885  4666666665443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=84.37  E-value=5.9  Score=38.46  Aligned_cols=65  Identities=14%  Similarity=0.233  Sum_probs=44.2

Q ss_pred             eCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE------cc-------CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290           58 WNSKGSLLISGSDDTHINVWSYSSRKLLHSI------ET-------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (763)
Q Consensus        58 fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~------~~-------~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~  124 (763)
                      +..++++|+.-..+|.+++||+.+++.+..-      ..       .....|..+.+..+  |.-|++-+ +|..+.|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~--G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN--GVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC--CCEEEEEe-CCCEEEecc
Confidence            3457889999999999999999998765332      11       24456666777655  55555544 466677766


Q ss_pred             C
Q 004290          125 S  125 (763)
Q Consensus       125 ~  125 (763)
                      .
T Consensus        95 ~   95 (219)
T PF07569_consen   95 D   95 (219)
T ss_pred             c
Confidence            5

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=84.35  E-value=3  Score=41.96  Aligned_cols=111  Identities=22%  Similarity=0.146  Sum_probs=84.5

Q ss_pred             hHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchh
Q 004290          364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA  443 (763)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~  443 (763)
                      ..+.+.++..+.+|+ |-.+|.+|+..++..+-.      .+++.||+.++++-.-.   ..|-.||..++.++....++
T Consensus        98 SEiKE~GN~yFKQgK-y~EAIDCYs~~ia~~P~N------pV~~~NRA~AYlk~K~F---A~AE~DC~~AiaLd~~Y~KA  167 (536)
T KOG4648|consen   98 SEIKERGNTYFKQGK-YEEAIDCYSTAIAVYPHN------PVYHINRALAYLKQKSF---AQAEEDCEAAIALDKLYVKA  167 (536)
T ss_pred             HHHHHhhhhhhhccc-hhHHHHHhhhhhccCCCC------ccchhhHHHHHHHHHHH---HHHHHhHHHHHHhhHHHHHH
Confidence            346777777888888 668999999888766533      45688999999864422   25668999999999999999


Q ss_pred             HHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHH
Q 004290          444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI  484 (763)
Q Consensus       444 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  484 (763)
                      ..+...+.+.|+...++..-......+-|....+-...+++
T Consensus       168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  168 YSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             HHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence            99999999999998888866666666777766655444444

>PHA02790 Kelch-like protein; Provisional

Probab=84.35  E-value=33  Score=37.98  Aligned_cols=104  Identities=7%  Similarity=-0.052  Sum_probs=51.1

Q ss_pred             CCCEEEEEeCC--CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC---cEEEEECCCCCCCCCCCC
Q 004290           61 KGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDN  135 (763)
Q Consensus        61 ~g~~Lasgs~D--~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg---~I~iwd~~~~~~~~~~~~  135 (763)
                      +|.+.+.|+.+  ..+..||..+++-...-.-.....-.+++ .-+  +.+.+.|+.++   .+..||..+...      
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~-~~~--g~IYviGG~~~~~~~ve~ydp~~~~W------  388 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA-SIN--NVIYVIGGHSETDTTTEYLLPNHDQW------  388 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE-EEC--CEEEEecCcCCCCccEEEEeCCCCEE------
Confidence            56777788754  35778887765432211001111111222 223  57888887653   467888875332      


Q ss_pred             CCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290          136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (763)
Q Consensus       136 ~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~  181 (763)
                        .....+....... +++. - ++.+.+.|   |.+.+||.++.+
T Consensus       389 --~~~~~m~~~r~~~-~~~~-~-~~~IYv~G---G~~e~ydp~~~~  426 (480)
T PHA02790        389 --QFGPSTYYPHYKS-CALV-F-GRRLFLVG---RNAEFYCESSNT  426 (480)
T ss_pred             --EeCCCCCCccccc-eEEE-E-CCEEEEEC---CceEEecCCCCc
Confidence              1122221111111 2222 2 44666666   356778876554

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=83.76  E-value=95  Score=36.74  Aligned_cols=91  Identities=8%  Similarity=0.076  Sum_probs=56.4

Q ss_pred             CccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccc-c-CCCCCccceeEEEEcCCC
Q 004290          214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL-S-EHGRSSLHLTHVTFSPNG  291 (763)
Q Consensus       214 ~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~~~~~i~~v~~spdg  291 (763)
                      ...+...++|+|.....||+....|...|||+........-...     ..... .+.+ . ...+  .....+.|.++-
T Consensus       144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~-----~~~~~-~gsi~~d~~e~--s~w~rI~W~~~~  215 (765)
T PF10214_consen  144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR-----LSRNI-SGSIIFDPEEL--SNWKRILWVSDS  215 (765)
T ss_pred             CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCccee-----eccCC-CccccCCCccc--CcceeeEecCCC
Confidence            34567899999988889999999999999999322211110000     00000 0111 0 0112  247789999988


Q ss_pred             CEEEEEeCCCeEEEEECCCCCc
Q 004290          292 EEVLLSYSGEHVYLMDVNHAGG  313 (763)
Q Consensus       292 ~~l~~~s~d~~i~iwd~~~~~~  313 (763)
                      ..|+++.. ..+.++|+.+...
T Consensus       216 ~~lLv~~r-~~l~~~d~~~~~~  236 (765)
T PF10214_consen  216 NRLLVCNR-SKLMLIDFESNWQ  236 (765)
T ss_pred             CEEEEEcC-CceEEEECCCCCc
Confidence            87777654 4678888887543

These proteins are found in fungi.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=82.92  E-value=20  Score=37.49  Aligned_cols=123  Identities=23%  Similarity=0.157  Sum_probs=88.2

Q ss_pred             HHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccc---------hhhhhHHHHHhhccccccchhhhHHhHHHHhc
Q 004290          365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR---------HECLCIRAALLLKRKWKNDAQMAIRDCYNARR  435 (763)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~  435 (763)
                      .....++..+..|+ |..|+..|..++............         ..++-|.+.-+++-.   +.-.|+..|..++.
T Consensus       210 ~~ke~Gn~~fK~gk-~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~---~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  210 RKKERGNVLFKEGK-FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLK---EYKEAIESCNKVLE  285 (397)
T ss_pred             HHHHhhhHHHhhch-HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhh---hHHHHHHHHHHHHh
Confidence            34445555566666 667888888877655543333322         125556665555532   22367899999999


Q ss_pred             CCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHH
Q 004290          436 IDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAA  491 (763)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  491 (763)
                      ++|.+.++.++..+++..++.+..+-..+.......|+..........+..++...
T Consensus       286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999877766666555555433

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=82.92  E-value=29  Score=36.93  Aligned_cols=109  Identities=10%  Similarity=0.042  Sum_probs=57.0

Q ss_pred             CceEEEEeCCCCCEEEEEe-----------CCC-cEEEEeCCC--Ce--EEEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004290           51 GCVNAISWNSKGSLLISGS-----------DDT-HINVWSYSS--RK--LLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs-----------~D~-~v~iWd~~~--~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s  114 (763)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  |+  ....+ .........+++.++  + ++++ .
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-a~~l~~p~Gi~~~~~--G-lyV~-~   88 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-AEELSMVTGLAVAVG--G-VYVA-T   88 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-ecCCCCccceeEecC--C-EEEe-C
Confidence            4567899999999887753           223 677776543  32  23344 233345688999988  6 5554 4


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeeec----ccCceeEEEEecCCCCEEEEEe
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQC----HTRRVKKLAVEVGNPHVVWSAS  167 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~sp~~~~~l~s~s  167 (763)
                      .....++.|... .+... ......+..+..    +......++|.|+ +.+.++.+
T Consensus        89 ~~~i~~~~d~~g-dg~ad-~~~~~l~~~~~~~~~~~~~~~~~l~~gpD-G~LYv~~G  142 (367)
T TIGR02604        89 PPDILFLRDKDG-DDKAD-GEREVLLSGFGGQINNHHHSLNSLAWGPD-GWLYFNHG  142 (367)
T ss_pred             CCeEEEEeCCCC-CCCCC-CccEEEEEccCCCCCcccccccCceECCC-CCEEEecc
Confidence            443333334432 22110 000011112221    2345778999994 45555544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=82.89  E-value=3.1  Score=47.12  Aligned_cols=71  Identities=17%  Similarity=0.271  Sum_probs=46.1

Q ss_pred             CCCCEEEEecCCCcEEEEEcCc----CcEE-EEEecC---------------------CcceEEEEeeC----CCCeEEE
Q 004290          637 QRGDYIASGSDDGRWFIWEKQT----GRLI-KMLLGD---------------------EAVVNCVQCHP----FDCVVAT  686 (763)
Q Consensus       637 ~d~~~l~sgs~Dg~i~iWd~~t----g~~~-~~l~gH---------------------~~~V~~v~~sp----~~~~laS  686 (763)
                      ++...++.+..||.+.......    +... ..+..+                     ...+..++.++    +..+|+|
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3556777777888888877764    3222 222222                     24577788887    7789999


Q ss_pred             EeCCCcEEEEcCCCCCCcccc
Q 004290          687 SGIDNTIKIWTPSASVPSIVS  707 (763)
Q Consensus       687 ~s~D~~IrvW~~~~~~~~~~~  707 (763)
                      .+.|+++|+|++.++.++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999997665

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=82.73  E-value=5.7  Score=26.42  Aligned_cols=31  Identities=10%  Similarity=0.113  Sum_probs=24.8

Q ss_pred             CCCCEEEEec-CCCcEEEEEcCcCcEEEEEec
Q 004290          637 QRGDYIASGS-DDGRWFIWEKQTGRLIKMLLG  667 (763)
Q Consensus       637 ~d~~~l~sgs-~Dg~i~iWd~~tg~~~~~l~g  667 (763)
                      ||+++|+.+. .+++|.++|..+++.+..+.-
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5777666654 578999999999999888765

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.15  E-value=4.6  Score=43.83  Aligned_cols=67  Identities=12%  Similarity=0.113  Sum_probs=46.0

Q ss_pred             ccCCCCEEEEe-cCC----CcEEEEEcCcCcEEEE-EecCCcceEEEEeeCCCCeEEEEeCCC-----------cEEEEc
Q 004290          635 LGQRGDYIASG-SDD----GRWFIWEKQTGRLIKM-LLGDEAVVNCVQCHPFDCVVATSGIDN-----------TIKIWT  697 (763)
Q Consensus       635 ~s~d~~~l~sg-s~D----g~i~iWd~~tg~~~~~-l~gH~~~V~~v~~sp~~~~laS~s~D~-----------~IrvW~  697 (763)
                      +||||++||-+ +..    ..|+|.|+++|+.+.. +.+ .. -..+.|.+++..|+-...|.           .|++|.
T Consensus       131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~  208 (414)
T PF02897_consen  131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK  208 (414)
T ss_dssp             ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred             ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence            89999998755 333    4599999999988763 332 11 12399999988666555433           388888


Q ss_pred             CCCCCC
Q 004290          698 PSASVP  703 (763)
Q Consensus       698 ~~~~~~  703 (763)
                      +.+...
T Consensus       209 ~gt~~~  214 (414)
T PF02897_consen  209 LGTPQS  214 (414)
T ss_dssp             TTS-GG
T ss_pred             CCCChH
Confidence            877654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=81.60  E-value=1.4  Score=49.86  Aligned_cols=118  Identities=19%  Similarity=0.248  Sum_probs=71.0

Q ss_pred             eccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCC--CCeEEE----EEccCCCCceEEEEEeeCC-CCcEEEEEeCCC
Q 004290           46 LEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYS--SRKLLH----SIETGHSANVFCTKFVPET-SDELVVSGAGDA  117 (763)
Q Consensus        46 l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~--~~~~~~----~~~~~h~~~V~~v~~~p~~-~~~~l~s~s~dg  117 (763)
                      ++|..+.|-.+.|-. +...++  -.-|.+.|||+.  .|+...    +........+.-+.|.|-- +.-++..+-.++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            456778888888853 222232  223578899875  343222    2213334445556666521 146777777889


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEE-----------ecCCCCEEEEEeCCCcEEEEEC
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV-----------EVGNPHVVWSASEDGTLRQHDF  177 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----------sp~~~~~l~s~s~dg~i~iwd~  177 (763)
                      .|++...++..           ...+.+|...+..++|           +| +|..|+.++.||.++.|-+
T Consensus       206 ~i~lL~~~ra~-----------~~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  206 EIRLLNINRAL-----------RSLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ceeEeeechHH-----------HHHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeee
Confidence            99998887532           3445568777776665           56 5567777777777776654

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.24  E-value=24  Score=42.65  Aligned_cols=66  Identities=8%  Similarity=-0.069  Sum_probs=39.6

Q ss_pred             CCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEee---CC-CCeEEEEeCCCcEEEEcCCCCCCc
Q 004290          638 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCH---PF-DCVVATSGIDNTIKIWTPSASVPS  704 (763)
Q Consensus       638 d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~s---p~-~~~laS~s~D~~IrvW~~~~~~~~  704 (763)
                      ...+++.++++ -++++++.+..+.....-|.-++..++.-   .. ...+++...+|.+.+..+..-.+.
T Consensus       723 ~~~~~~i~~e~-~~~v~~~~~q~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~g~i~~~slp~Lre~  792 (993)
T KOG1983|consen  723 IEVPTLICGES-AIRVFSVPAQQCKELQLIHEAPVVGISVLDGISKPEPSLDLLDANGHISKHSLPSLREE  792 (993)
T ss_pred             cccceEEecCC-ccceecccccccccceeeccccceeeeeeecccCccceeeEeecCCCccceecchhhhh
Confidence            34566666644 58888888777666665565544333332   12 356677777777776666554433

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=81.18  E-value=0.52  Score=52.99  Aligned_cols=63  Identities=14%  Similarity=0.143  Sum_probs=49.6

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEe-----------eCCCCeEEEEeCCCcEEEEcC
Q 004290          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQC-----------HPFDCVVATSGIDNTIKIWTP  698 (763)
Q Consensus       635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~-----------sp~~~~laS~s~D~~IrvW~~  698 (763)
                      |-++.-|+..|-+++.|++-...+... ..+++|..+++.++|           ||||+.||++..||.|+.|.+
T Consensus       191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  191 IAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             cccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            566778999999999998776665443 566779888887765           788899999999998888765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	763
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-07
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		7e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		7e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		8e-07
2h9l_A	329	Wdr5delta23 Length = 329		1e-10
2h9l_A	329	Wdr5delta23 Length = 329		7e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		7e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		8e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		8e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-10
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-05
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-10
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-10
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-10
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-07
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		8e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		4e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-04
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		8e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		8e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		9e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		9e-04

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 82  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 140
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 141 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 189
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 190 --SSSYDGLCRIWDTASG 205

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 252 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 310
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 311 CHPTENIIASAALENDKTIKLW 332

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 80  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 138
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 139 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 187
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 188 --SSSYDGLCRIWDTASG 203

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 250 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 309 CHPTENIIASAALENDKTIKLW 330

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 64  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 172 --SSSYDGLCRIWDTASG 187

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 234 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 59  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 117
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 118 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 166
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 167 --SSSYDGLCRIWDTASG 182

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 229 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 287
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 288 CHPTENIIASAALENDKTIKLW 309

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 63  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 121
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 122 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 170
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 171 --SSSYDGLCRIWDTASG 186

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 233 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 291
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 292 CHPTENIIASAALENDKTIKLW 313

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 64  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 172 --SSSYDGLCRIWDTASG 187

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 234 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 58  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 116
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 117 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 165
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 166 --SSSYDGLCRIWDTASG 181

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 228 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 287 CHPTENIIASAALENDKTIKLW 308

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 54  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 112
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 113 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 161
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 162 --SSSYDGLCRIWDTASG 177

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 224 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 282
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 283 CHPTENIIASAALENDKTIKLW 304

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 75  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 133
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 134 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 182
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 183 --SSSYDGLCRIWDTASG 198

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 245 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 303
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 304 CHPTENIIASAALENDKTIKLW 325

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 64  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 172 --SSSYDGLCRIWDTASG 187

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 234 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 57  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 115
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 116 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 164
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 165 --SSSYDGLCRIWDTASG 180

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 227 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 285
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 286 CHPTENIIASAALENDKTIKLW 307

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 58  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 116
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 117 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 165
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 166 --SSSYDGLCRIWDTASG 181

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 228 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 287 CHPTENIIASAALENDKTIKLW 308

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 169 --SSSYDGLCRIWDTASG 184

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 169 --SSSYDGLCRIWDTASG 184

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 677 CHPFDCVVATSGIDN--TIKI 695
           CHP + ++A++ ++N  TIK+
Sbjct: 290 CHPTENIIASAALENDKTIKL 310

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 169 --SSSYDGLCRIWDTASG 184

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK++
Sbjct: 290 CHPTENIIASAALENDKTIKLY 311

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNL 124
           P+++  L+VSG+ D  VR++++
Sbjct: 120 PQSN--LIVSGSFDESVRIWDV 139

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNL 124
           P+++  L+VSG+ D  VR++++
Sbjct: 120 PQSN--LIVSGSFDESVRIWDV 139

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 40  LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 99
           ++  R L GH+  VN + ++ K   ++S S D  I VW+ S+ + + ++  GH   + C 
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACL 302
Query: 100 KFVPETSDELVVSGAGDAEVRLFNL 124
           ++     D LVVSG+ D  +RL+++
Sbjct: 303 QY----RDRLVVSGSSDNTIRLWDI 323

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
           + L GH   V  ++++  G  + S SDD  + +W+ +  +LL ++ TGHS++V+   F P
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP 436
Query: 104 ETSDELVVSGAGDAEVRLFN 123
           +  D+ + S + D  V+L+N
Sbjct: 437 D--DQTIASASDDKTVKLWN 454

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 698
           G  IAS SDD    +W +  G+L++ L G  + VN V   P    +A++  D T+K+W  
Sbjct: 233 GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR 291
Query: 699 SASV-------PSIVSGGAAGPDTADVLEAMESNQRKL-SRNREH 735
           +  +        S V G A  PD   +  A +    KL +RN +H
Sbjct: 292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH 336

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
           R L+GH G V ++ W  + + ++S S D  + VW+  + +  H+I+  H   V    F P
Sbjct: 60  RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAP 118
Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
             + + V  G  D+   +FNLS  + R   D  +  S +   H                 
Sbjct: 119 --NGQSVACGGLDSACSIFNLSSQADR---DGNMPVSRVLTGHKGY-------------- 159
Query: 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD---PPKQTLSLKS 220
             AS    +   + R        GS  Q C  +L D+  G + S+     P   T  + S
Sbjct: 160 --ASSCQYVPDQETRL-----ITGSGDQTC--VLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 221 CDISSTRPHLLLVGGSDAFARLYDRRM 247
             I+S   ++ + G  D   RL+D R+
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRI 237

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 26/180 (14%)
Query: 17  TRHTDTRPDVNHSLQMHSSLVRRLSQEREL-----------------EGHQGCVNAISWN 59
           T HT    DV+  L +H SL   ++ +++L                 + H   VN +S+N
Sbjct: 224 TGHTAVVEDVSWHL-LHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 60  SKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117
                +L +GS D  + +W   + KL LHS E+ H   +F  ++ P     L  SG  D 
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGT-DR 340
Query: 118 EVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
            + +++LS+     S    +D       ++  HT ++   +     P V+ S SED  ++
Sbjct: 341 RLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 3/138 (2%)
Query: 42  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
           Q   L+GH   V  ++W S G  L SG +D  + +W   S  +    +T H+A V    +
Sbjct: 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS-SIPKFTKTNHNAAVKAVAW 267
Query: 102 VPETSDELVVSGAG-DAEVRLFNLSRFSG-RGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
            P  S+ L   G   D ++  +N +  +    +D  +   S ++  H++ +        N
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN 327
Query: 160 PHVVWSASEDGTLRQHDF 177
              +WS S  G  +Q D 
Sbjct: 328 NLSIWSYSSSGLTKQVDI 345

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 53  VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVS 112
           + ++ ++  G  L +G++D  I +W   +RK++  ++ GH  +++   + P  S + +VS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFP--SGDKLVS 182
Query: 113 GAGDAEVRLFNL 124
           G+GD  VR+++L
Sbjct: 183 GSGDRTVRIWDL 194

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 40   LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS 87
            LS   EL+GH GCV   +++  G LL +G D+  I +W+ S  +LLHS
Sbjct: 1124 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1171

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 45/180 (25%)
Query: 44  RELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
           R L GH G V    W+S  + +++ISGS D  + VW+  + + +H++  GH++ V C   
Sbjct: 153 RTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLY-GHTSTVRCMHL 207
Query: 102 VPETSDELVVSGAGDAEVRLFNLS------------------RFSGRGLDDNAI------ 137
                ++ VVSG+ DA +R++++                   ++ GR +   A       
Sbjct: 208 ----HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKV 263
Query: 138 ----TPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191
               T + L+  Q HT RV  L  +    HVV S S D ++R  D   G +C    + HQ
Sbjct: 264 WDPETETCLHTLQGHTNRVYSLQFD--GIHVV-SGSLDTSIRVWDVETG-NCIHTLTGHQ 319

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 40   LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS 87
            LS   EL+GH GCV   +++  G LL +G D+  I +W+ S  +LLHS
Sbjct: 1117 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 41  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
           +  R   GH   V +++++S    ++SGS D  I +W+          +  HS  V C +
Sbjct: 96  TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 155
Query: 101 FVPETSDELVVSGAGDAEVRLFNLS 125
           F P +S+ ++VS   D  V+++NL+
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWNLA 180

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 17  TRHTDTRPDVNHSLQMHSSLVRRLSQEREL-----------------EGHQGCVNAISWN 59
           T HT    DV   L +H SL   ++ +++L                 + H   VN +S+N
Sbjct: 232 TGHTAVVEDVAWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290
Query: 60  SKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117
                +L +GS D  + +W   + KL LHS E+ H   +F  ++ P     L  SG  D 
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGT-DR 348
Query: 118 EVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
            + +++LS+     S    +D       ++  HT ++   +     P ++ S SED  ++
Sbjct: 349 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 408

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 41  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
           +  R   GH   V +++++S    ++SGS D  I +W+          +  HS  V C +
Sbjct: 119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178
Query: 101 FVPETSDELVVSGAGDAEVRLFNLS 125
           F P +S+ ++VS   D  V+++NL+
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWNLA 203

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 46  LEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVP 103
           ++ H   VN +S+N     +L +GS D  + +W   + KL LHS E+ H   +F  ++ P
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSP 331
Query: 104 ETSDELVVSGAGDAEVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
                L  SG  D  + +++LS+     S    +D       ++  HT ++   +     
Sbjct: 332 HNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390
Query: 160 PHVVWSASEDGTLR 173
           P ++ S SED  ++
Sbjct: 391 PWIICSVSEDNIMQ 404

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 17  TRHTDTRPDVNHSLQMHSSLVRRLSQEREL-----------------EGHQGCVNAISWN 59
           T HT    DV   L +H SL   ++ +++L                 + H   VN +S+N
Sbjct: 230 TGHTAVVEDVAWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 288
Query: 60  SKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117
                +L +GS D  + +W   + KL LHS E+ H   +F  ++ P     L  SG  D 
Sbjct: 289 PYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGT-DR 346
Query: 118 EVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
            + +++LS+     S    +D       ++  HT ++   +     P ++ S SED  ++
Sbjct: 347 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 406

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	763
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.98
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
3jro_A	753	Fusion protein of protein transport protein SEC13	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.82
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.82
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.82
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.82
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.77
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.76
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.76
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.76
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.74
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.72
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.72
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.71
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.66
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.66
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.65
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.65
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.64
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.63
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.63
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.62
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.61
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.58
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.54
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.53
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.52
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.49
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.46
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.46
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.45
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.45
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.43
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.42
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.42
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.41
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.4
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.39
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.38
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.36
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.35
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.32
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.31
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.31
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.3
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.29
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.27
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.24
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.23
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.21
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.19
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.17
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.17
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.17
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.15
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.13
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.1
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.09
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.08
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.06
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.06
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.05
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.99
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.97
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.94
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.92
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.91
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.9
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.89
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.82
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.82
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.8
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.8
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.78
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.78
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.77
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.77
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.71
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.68
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.59
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.57
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.57
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.54
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.51
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.5
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.45
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.42
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.41
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.37
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.31
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.24
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.22
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.2
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.19
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.12
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.05
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.98
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.97
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.97
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.95
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.91
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.9
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.87
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.85
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.84
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.7
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.7
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.68
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.66
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.62
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.61
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.61
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.58
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.57
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.56
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.53
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.53
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.51
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.49
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.47
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.45
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.43
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.42
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.39
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.35
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.34
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.3
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.28
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.26
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.24
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.22
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.19
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.07
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.03
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.99
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.84
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.77
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.61
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.5
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.43
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.42
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.39
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.29
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.27
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.21
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.18
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.01
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.96
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.85
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.82
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	95.78
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.7
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.51
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.47
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.28
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.24
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.21
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.19
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.82
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.79
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.59
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.11
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	93.96
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.93
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.48
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.44
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.41
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	92.43
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	92.22
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.21
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	91.3
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	90.59
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	89.95
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	89.89
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	89.67
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	89.58
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	88.42
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	87.54
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	87.18
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	86.84
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	85.57
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	84.76
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	84.48
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	84.27
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	83.86
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	82.51
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	80.87
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	80.8

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.2e-44  Score=390.87  Aligned_cols=209  Identities=18%  Similarity=0.299  Sum_probs=181.6

Q ss_pred             cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004290           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (763)
Q Consensus        42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i  121 (763)
                      ....|.+|.++|++++|+|++.+||+|+.|++|+|||+.+++....+ .+|...|.+++|+|+  +.+|++|+.|++|++
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~--~~~l~sgs~D~~i~i  176 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS--GKLLASCSADMTIKL  176 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCCCE
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCC--CCEEEEEeCCCeEEE
Confidence            35678999999999999999999999999999999999999999888 799999999999999  799999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004290          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (763)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  201 (763)
                      ||+...          .++..+.+|...|.+++|+| ++.+|++++.|++|++||++++...                  
T Consensus       177 wd~~~~----------~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~------------------  227 (410)
T 1vyh_C          177 WDFQGF----------ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCV------------------  227 (410)
T ss_dssp             EETTSS----------CEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE------------------
T ss_pred             EeCCCC----------ceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEE------------------
Confidence            999862          44778889999999999999 6689999999999999999887521                  


Q ss_pred             CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccc
Q 004290          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (763)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  281 (763)
                             ....+|...|.+++|+|+ +.+|++|+.|+.|++||+++++....+                    .+|.. .
T Consensus       228 -------~~~~~h~~~v~~~~~~~~-g~~l~s~s~D~~v~vwd~~~~~~~~~~--------------------~~h~~-~  278 (410)
T 1vyh_C          228 -------KTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAEL--------------------REHRH-V  278 (410)
T ss_dssp             -------EEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEE--------------------CCCSS-C
T ss_pred             -------EEEeCCCccEEEEEECCC-CCEEEEEcCCCeEEEEECCCCceeeEe--------------------cCCCc-e
Confidence                   112356778999999997 789999999999999999876533222                    33444 5


Q ss_pred             eeEEEEcCC--------------------CCEEEEEeCCCeEEEEECCCC
Q 004290          282 LTHVTFSPN--------------------GEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       282 i~~v~~spd--------------------g~~l~~~s~d~~i~iwd~~~~  311 (763)
                      |++++|+|+                    |.+|++|+.|+.|++||+.++
T Consensus       279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~  328 (410)
T 1vyh_C          279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG  328 (410)
T ss_dssp             EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred             EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            999999996                    678999999999999998773

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6e-43  Score=363.55  Aligned_cols=215  Identities=14%  Similarity=0.263  Sum_probs=183.7

Q ss_pred             ccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004290           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (763)
Q Consensus        39 ~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~  118 (763)
                      +++..++|++|.+.|++++|+|++++|++|+.||+|+|||+.++..+..+ ..|..+|.+++|+|+  +++|++|+.|++
T Consensus         2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~s~s~d~~   78 (304)
T 2ynn_A            2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFR   78 (304)
T ss_dssp             CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSE
T ss_pred             cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeCC--CCEEEEECCCCE
Confidence            35678899999999999999999999999999999999999999999988 789999999999999  799999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  198 (763)
                      |++||+.++          +++..+.+|.+.|.+++|+| ++.+|++|+.|++|++||++++..+               
T Consensus        79 i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~---------------  132 (304)
T 2ynn_A           79 IRVFNYNTG----------EKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWAL---------------  132 (304)
T ss_dssp             EEEEETTTC----------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEE---------------
T ss_pred             EEEEECCCC----------cEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcch---------------
Confidence            999999873          34778899999999999999 5689999999999999999875311               


Q ss_pred             ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (763)
                               .....+|...|.+++|+|.++.+|++|+.|++|++||++.......+.                   .++.
T Consensus       133 ---------~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-------------------~~~~  184 (304)
T 2ynn_A          133 ---------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-------------------TGQE  184 (304)
T ss_dssp             ---------EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-------------------CCCT
T ss_pred             ---------hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec-------------------cCCc
Confidence                     112235778899999999767899999999999999998764332210                   1222


Q ss_pred             ccceeEEEEcC--CCCEEEEEeCCCeEEEEECCCC
Q 004290          279 SLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       279 ~~~i~~v~~sp--dg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      . .+..+.|+|  ++.+|++++.|+.|++||+.++
T Consensus       185 ~-~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~  218 (304)
T 2ynn_A          185 R-GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (304)
T ss_dssp             T-CEEEEEECCSTTCCEEEEEETTSEEEEEETTTT
T ss_pred             C-cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC
Confidence            2 589999987  7889999999999999998773

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.3e-43  Score=369.62  Aligned_cols=214  Identities=23%  Similarity=0.342  Sum_probs=183.4

Q ss_pred             cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      .+..++|++|.+.|++++|+|++++|++|+.|++|+|||+.+++.+..+ ..|...|.+++|+|+  +.+|++|+.|+.|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~s~~~d~~v  121 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPS--GNYVACGGLDNIC  121 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECTT--SSEEEEEETTCEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECCC--CCEEEEEeCCCeE
Confidence            4567889999999999999999999999999999999999999999888 789999999999999  7999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      ++|++......      ......+.+|.+.|.++.|++ + ..+++++.|++|++||+++++.                 
T Consensus       122 ~iw~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~-~-~~l~s~s~d~~i~~wd~~~~~~-----------------  176 (340)
T 1got_B          122 SIYNLKTREGN------VRVSRELAGHTGYLSCCRFLD-D-NQIVTSSGDTTCALWDIETGQQ-----------------  176 (340)
T ss_dssp             EEEETTTCSBS------CEEEEEEECCSSCEEEEEEEE-T-TEEEEEETTSCEEEEETTTTEE-----------------
T ss_pred             EEEECccCCCc------ceeEEEecCCCccEEEEEECC-C-CcEEEEECCCcEEEEECCCCcE-----------------
Confidence            99999864321      134567789999999999998 4 3588999999999999987652                 


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                              +....+|...|.+++|+|+ +.+|++|+.|+.|++||++++..+..+                    .+|..
T Consensus       177 --------~~~~~~h~~~v~~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~~~~~--------------------~~h~~  227 (340)
T 1got_B          177 --------TTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTF--------------------TGHES  227 (340)
T ss_dssp             --------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCSEEEEE--------------------CCCSS
T ss_pred             --------EEEEcCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCeeEEEE--------------------cCCcC
Confidence                    1122357788999999997 689999999999999999986543222                    34554


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                       .|++++|+|++++|++++.|+.|++||+.++
T Consensus       228 -~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          228 -DINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             -CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             -CEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence             5999999999999999999999999999874

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.9e-43  Score=366.82  Aligned_cols=210  Identities=18%  Similarity=0.290  Sum_probs=174.9

Q ss_pred             ccceeeccccCceEEEEeCCC----CCEEEEEeCCCcEEEEeCCCCeE--EEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004290           41 SQERELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGA  114 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~----g~~Lasgs~D~~v~iWd~~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s  114 (763)
                      .+.+.+++|.+.|++++|+|+    +.+||||+.|++|+|||+.+++.  ...+ .+|...|.+++|+|+  +.++++++
T Consensus        23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l-~gh~~~v~~~~~~~~--~~~l~s~s   99 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-EGHQLGVVSVDISHT--LPIAASSS   99 (321)
T ss_dssp             EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECSS--SSEEEEEE
T ss_pred             heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee-ccCCCCEEEEEECCC--CCEEEEEe
Confidence            345677899999999999984    67999999999999999987754  3345 799999999999999  79999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      .|++|++||+.++          ..+..+..|...+.+++|+| ++.+|++++.||.|++||+++++..           
T Consensus       100 ~D~~i~lWd~~~~----------~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~-----------  157 (321)
T 3ow8_A          100 LDAHIRLWDLENG----------KQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKE-----------  157 (321)
T ss_dssp             TTSEEEEEETTTT----------EEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEE-----------
T ss_pred             CCCcEEEEECCCC----------CEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCcee-----------
Confidence            9999999999863          34677888999999999999 6689999999999999999887521           


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (763)
                                    .....+...|.+++|+|+ +++|++|+.|+.|++||+++++.+..+                    
T Consensus       158 --------------~~~~~~~~~v~~~~~spd-g~~lasg~~dg~i~iwd~~~~~~~~~~--------------------  202 (321)
T 3ow8_A          158 --------------YSLDTRGKFILSIAYSPD-GKYLASGAIDGIINIFDIATGKLLHTL--------------------  202 (321)
T ss_dssp             --------------EEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE--------------------
T ss_pred             --------------EEecCCCceEEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEE--------------------
Confidence                          011134567899999997 789999999999999999987543322                    


Q ss_pred             CCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       275 ~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .+|.. .|++++|+|++++|++++.|+.|++||+.++
T Consensus       203 ~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~  238 (321)
T 3ow8_A          203 EGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHA  238 (321)
T ss_dssp             CCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred             cccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence            33544 5999999999999999999999999998763

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.3e-43  Score=379.08  Aligned_cols=228  Identities=24%  Similarity=0.377  Sum_probs=188.8

Q ss_pred             hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (763)
Q Consensus        38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg  117 (763)
                      ....+.++|+||.+.|++++|+|++++||||+.|++|+|||+.+++.+..+ ..|...|.+++|+|+  +++|++|+.|+
T Consensus        54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~~--g~~las~~~d~  130 (380)
T 3iz6_a           54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAPN--GQSVACGGLDS  130 (380)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECTT--SSEEEECCSSS
T ss_pred             ceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECCC--CCEEEEeeCCC
Confidence            345677899999999999999999999999999999999999999999988 799999999999999  79999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  197 (763)
                      .|++||+.......   ........+.+|.+.|.++.|.|+++..|++|+.|++|++||+++++..           . .
T Consensus       131 ~v~iw~~~~~~~~~---~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~-----------~-~  195 (380)
T 3iz6_a          131 ACSIFNLSSQADRD---GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI-----------S-I  195 (380)
T ss_dssp             CCEEEECCCCSSCC---CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE-----------E-E
T ss_pred             cEEEEECCCCcccc---CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE-----------E-E
Confidence            99999997532111   1123456788999999999999977788999999999999999987632           0 0


Q ss_pred             EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004290          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (763)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (763)
                      +        ......+|...|.+++|+|.++++|++|+.|+.|++||++....            ++..+       .+|
T Consensus       196 ~--------~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~------------~~~~~-------~~h  248 (380)
T 3iz6_a          196 F--------GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR------------AVRTY-------HGH  248 (380)
T ss_dssp             E--------CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC------------CCEEE-------CCC
T ss_pred             e--------ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc------------ceEEE-------CCc
Confidence            0        01122457889999999986688999999999999999984321            11111       456


Q ss_pred             CccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       278 ~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .. .|++++|+|++++|++++.|++|++||+.++
T Consensus       249 ~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~  281 (380)
T 3iz6_a          249 EG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTG  281 (380)
T ss_dssp             SS-CCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred             CC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence            55 5999999999999999999999999999885

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.4e-42  Score=396.81  Aligned_cols=272  Identities=15%  Similarity=0.166  Sum_probs=194.8

Q ss_pred             ccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEE----------------
Q 004290           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSI----------------   88 (763)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--~~~~~----------------   88 (763)
                      ...+.+|+  ++..+....|.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++  ....+                
T Consensus        38 ~~~v~l~~--~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg  115 (611)
T 1nr0_A           38 GTSVYTVP--VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES  115 (611)
T ss_dssp             TTEEEEEE--TTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS
T ss_pred             CCEEEEec--CCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCC
Confidence            35777887  45667888999999999999999999999999999999999986432  22222                


Q ss_pred             ---------------------------ccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004290           89 ---------------------------ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (763)
Q Consensus        89 ---------------------------~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  141 (763)
                                                 ..+|...|++++|+|+. ...|++|+.|++|++||...          .++..
T Consensus       116 ~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~-~~~l~s~s~D~~v~lwd~~~----------~~~~~  184 (611)
T 1nr0_A          116 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR-PFRIISGSDDNTVAIFEGPP----------FKFKS  184 (611)
T ss_dssp             CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSS-SCEEEEEETTSCEEEEETTT----------BEEEE
T ss_pred             CEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCC-CeEEEEEeCCCeEEEEECCC----------CeEee
Confidence                                       13455666667777662 23688888888899998764          23467


Q ss_pred             eeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEE
Q 004290          142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  221 (763)
Q Consensus       142 ~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  221 (763)
                      .+.+|...|.+++|+| ++.+|++++.|++|++||+.+++..              ..+...    .....+|...|.++
T Consensus       185 ~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~--------------~~~~~~----~~~~~~h~~~V~~v  245 (611)
T 1nr0_A          185 TFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKT--------------GVFEDD----SLKNVAHSGSVFGL  245 (611)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE--------------EECBCT----TSSSCSSSSCEEEE
T ss_pred             eeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEe--------------eeeccc----cccccccCCCEEEE
Confidence            7889999999999999 6789999999999999999877522              000000    00112578899999


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC-------------------Cccccccc----ccccCCCCC
Q 004290          222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP-------------------PCVNYFCP----MHLSEHGRS  278 (763)
Q Consensus       222 ~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~-------------------~~~~~~~~----~~~~~~g~~  278 (763)
                      +|+|+ +++|++++.|++|++||+++++.+..+.......                   ..+..+..    ......+|.
T Consensus       246 ~~spd-g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~  324 (611)
T 1nr0_A          246 TWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN  324 (611)
T ss_dssp             EECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS
T ss_pred             EECCC-CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC
Confidence            99997 7899999999999999999876554432110000                   00000000    000114566


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceE-eecCCCCeeeeeccC
Q 004290          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR-YTVGDASKIMSFTPT  332 (763)
Q Consensus       279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~p~  332 (763)
                      . .|++++|+|+|++|++++.|+.|++||+.++...... ..+...+..++|++.
T Consensus       325 ~-~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~  378 (611)
T 1nr0_A          325 K-AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK  378 (611)
T ss_dssp             S-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred             C-CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC
Confidence            6 6999999999999999999999999999986533221 234555666666654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.3e-42  Score=365.11  Aligned_cols=218  Identities=18%  Similarity=0.273  Sum_probs=184.0

Q ss_pred             cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      .+..++|+||.+.|++++|+|++++||||+.|++|+|||..+++....+ ..|...|.+++|+|+  +.+|++|+.|+.|
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~~~~v~~~~~sp~--g~~lasg~~d~~i  130 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-TMPCTWVMACAYAPS--GCAIACGGLDNKC  130 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCEEEECTT--SSEEEEESTTSEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-ecCCCCEEEEEECCC--CCEEEEeeCCCCE
Confidence            3567889999999999999999999999999999999999999988888 688999999999999  7999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      ++|++.......    .......+.+|.+.|.+++|+| ++..|++++.|++|++||+++++..                
T Consensus       131 ~v~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~----------------  189 (354)
T 2pbi_B          131 SVYPLTFDKNEN----MAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLL----------------  189 (354)
T ss_dssp             EEEECCCCTTCC----SGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE----------------
T ss_pred             EEEEEecccccc----ccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEE----------------
Confidence            999997532111    1133566778999999999999 5688999999999999999887521                


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCC-CCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~-~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (763)
                               ....+|...|.+++|+|. ++++|++|+.|+.|++||+++++.+..+                    .+|.
T Consensus       190 ---------~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~--------------------~~h~  240 (354)
T 2pbi_B          190 ---------QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF--------------------ETHE  240 (354)
T ss_dssp             ---------EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE--------------------CCCS
T ss_pred             ---------EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------cCCC
Confidence                     112356778999999885 2579999999999999999987543322                    3355


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      . .|++++|+|++.+|++++.|++|++||++..
T Consensus       241 ~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          241 S-DVNSVRYYPSGDAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             S-CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             C-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            4 5999999999999999999999999999873

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.6e-41  Score=354.30  Aligned_cols=213  Identities=20%  Similarity=0.330  Sum_probs=184.2

Q ss_pred             ccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004290           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (763)
Q Consensus        39 ~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~  118 (763)
                      ...+..++.+|.+.|++++|+|++++||+|+.|+.|+|||+.+++....+ .+|...|.+++|+|+  +++|++++.|+.
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~~~d~~   88 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSD--SNLLVSASDDKT   88 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcCC--CCEEEEECCCCE
Confidence            35667889999999999999999999999999999999999999998888 799999999999999  799999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  198 (763)
                      |++||+.++          .++..+.+|...|.+++|+| ++.+|++++.|+.|++||+++++..               
T Consensus        89 i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~---------------  142 (312)
T 4ery_A           89 LKIWDVSSG----------KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCL---------------  142 (312)
T ss_dssp             EEEEETTTC----------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEE---------------
T ss_pred             EEEEECCCC----------cEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEE---------------
Confidence            999999863          34778889999999999999 6689999999999999999876521               


Q ss_pred             ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (763)
                                .....|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.                    .+.
T Consensus       143 ----------~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~--------------------~~~  191 (312)
T 4ery_A          143 ----------KTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLI--------------------DDD  191 (312)
T ss_dssp             ----------EEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEEC--------------------CSS
T ss_pred             ----------EEecCCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeEEe--------------------ccC
Confidence                      112346678999999997 7899999999999999999875432221                    112


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ...+..++|+|++++|++++.|+.|++||+.++
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG  224 (312)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             CCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            225999999999999999999999999999874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-42  Score=366.20  Aligned_cols=219  Identities=17%  Similarity=0.248  Sum_probs=181.3

Q ss_pred             ccccceeeccccC-ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEE--EEEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004290           39 RLSQERELEGHQG-CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAG  115 (763)
Q Consensus        39 ~~~~~~~l~gH~~-~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~  115 (763)
                      .++++.+|++|.+ .|++++|+|+|++||+|+.|++|+|||+.++...  ..+..+|...|.+++|+|+  +++|++|+.
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~s~   81 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC--GNYLASASF   81 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT--SSEEEEEET
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC--CCEEEEEEC
Confidence            4567889999988 9999999999999999999999999999887643  3344689999999999999  799999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (763)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  195 (763)
                      |++|++||+.....        .++..+.+|...|.+++|+| ++.+|++++.|++|++||++.....            
T Consensus        82 D~~v~iw~~~~~~~--------~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~------------  140 (345)
T 3fm0_A           82 DATTCIWKKNQDDF--------ECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEY------------  140 (345)
T ss_dssp             TSCEEEEEECCC-E--------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCE------------
T ss_pred             CCcEEEEEccCCCe--------EEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCe------------
Confidence            99999999986331        34677889999999999999 6789999999999999999875421            


Q ss_pred             EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (763)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (763)
                                ..+.....|...|.+++|+|+ +.+|++|+.|+.|++||.+.++..           +...+       .
T Consensus       141 ----------~~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~-----------~~~~~-------~  191 (345)
T 3fm0_A          141 ----------ECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWV-----------CCATL-------E  191 (345)
T ss_dssp             ----------EEEEEECCCCSCEEEEEECSS-SSCEEEEETTSCEEEEEEETTEEE-----------EEEEE-------C
T ss_pred             ----------EEEEEecCcCCCeEEEEECCC-CCEEEEEeCCCcEEEEEecCCCEE-----------EEEEe-------c
Confidence                      111222356788999999997 689999999999999998764311           11111       3


Q ss_pred             CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       276 g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      +|.. .|++++|+|+|++|++++.|++|++|+...
T Consensus       192 ~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~  225 (345)
T 3fm0_A          192 GHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQYL  225 (345)
T ss_dssp             CCSS-CEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             CCCC-ceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence            4555 699999999999999999999999999755

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.5e-42  Score=392.67  Aligned_cols=285  Identities=14%  Similarity=0.132  Sum_probs=207.7

Q ss_pred             ccccchhhhhccccceeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCC
Q 004290           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD  107 (763)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~  107 (763)
                      .+.+|+    ..+....|.+|.+.|++++|+|++. +|++|+.|++|++||..+++++..+ .+|...|.+++|+|+  +
T Consensus       130 ~v~~wd----~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspd--g  202 (611)
T 1nr0_A          130 HVFLFD----TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPD--G  202 (611)
T ss_dssp             EEEETT----TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTT--S
T ss_pred             EEEEee----CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCC--C
Confidence            566666    2356678999999999999999987 6999999999999999999998888 799999999999999  7


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee-------cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 004290          108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (763)
Q Consensus       108 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~  180 (763)
                      ++|++|+.|++|++||+.++.          ++..+.       +|.+.|.+++|+| ++.+|++++.|++|++||++++
T Consensus       203 ~~las~s~D~~i~lwd~~~g~----------~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~  271 (611)
T 1nr0_A          203 SLFASTGGDGTIVLYNGVDGT----------KTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATL  271 (611)
T ss_dssp             SEEEEEETTSCEEEEETTTCC----------EEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT
T ss_pred             CEEEEEECCCcEEEEECCCCc----------EeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCC
Confidence            999999999999999988632          233332       7999999999999 6689999999999999999887


Q ss_pred             CCCCCCCC--------------------CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004290          181 SSCPPAGS--------------------SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (763)
Q Consensus       181 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i  240 (763)
                      +.......                    ........+|+...+.  ......+|...|++++|+|+ +++|++++.|+.|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~--~~~~~~gh~~~v~~l~~spd-g~~l~s~s~D~~v  348 (611)
T 1nr0_A          272 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS--IDQVRYGHNKAITALSSSAD-GKTLFSADAEGHI  348 (611)
T ss_dssp             EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE--EEEEECCCSSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred             ceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC--cceEEcCCCCCEEEEEEeCC-CCEEEEEeCCCcE
Confidence            54311100                    0011122344443332  22334578899999999997 7899999999999


Q ss_pred             EEEeCCCCCCCcccCCCCC---------CCC---------cccc--------------------------ccccc-----
Q 004290          241 RLYDRRMLPPLTSCQKRMS---------PPP---------CVNY--------------------------FCPMH-----  271 (763)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~---------~~~---------~~~~--------------------------~~~~~-----  271 (763)
                      ++||+.++.....+...+.         +..         .++.                          +.+..     
T Consensus       349 ~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~  428 (611)
T 1nr0_A          349 NSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA  428 (611)
T ss_dssp             EEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEE
T ss_pred             EEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEE
Confidence            9999988754332211000         000         0000                          00000     


Q ss_pred             -------------ccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCcc-ceEeecCCCCeeeeeccCCCC
Q 004290          272 -------------LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTLNG  335 (763)
Q Consensus       272 -------------~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~p~~~~  335 (763)
                                   +....+. ..+++++|+|||++|++|+.|+.|++||+.++... .....+...+..++|+|+.+.
T Consensus       429 ~~~~~v~~~~~~~~~~~~~~-~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~  505 (611)
T 1nr0_A          429 ACYKHIAIYSHGKLTEVPIS-YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF  505 (611)
T ss_dssp             EESSEEEEEETTEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             EeCceEEEEeCCceeeeecC-CCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCE
Confidence                         0000011 24889999999999999999999999999875321 223566778889999997543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.3e-42  Score=361.85  Aligned_cols=208  Identities=18%  Similarity=0.173  Sum_probs=160.3

Q ss_pred             ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC------------CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004290           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------RKLLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (763)
Q Consensus        47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~------------~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s  114 (763)
                      ..|...|.+++|+|||++|++++ |+++++||...            +.....  ..|...|.+++|+|+   ..|++|+
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~d---~~l~~~s  100 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG--VQTEAGVADLTWVGE---RGILVAS  100 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE--EEESSCEEEEEEETT---TEEEEEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeee--eccCCCEEEEEEeCC---CeEEEEE
Confidence            35778899999999999999888 67888887321            111111  235678999999998   5788999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      .||+|+|||+.+++...      .....+.+|.+.|++|+|+| ++.+|++|+.|++|++||+++++.            
T Consensus       101 ~dg~v~lWd~~~~~~~~------~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~------------  161 (344)
T 4gqb_B          101 DSGAVELWELDENETLI------VSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVV------------  161 (344)
T ss_dssp             TTSEEEEEEECTTSSCE------EEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE------------
T ss_pred             CCCEEEEEeccCCCcee------EeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcE------------
Confidence            99999999998743211      11233458999999999999 678999999999999999988752            


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (763)
                                   +....+|...|++++|+|++..+|++++.|++|++||+++++....+..                  
T Consensus       162 -------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------  210 (344)
T 4gqb_B          162 -------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC------------------  210 (344)
T ss_dssp             -------------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------------------
T ss_pred             -------------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec------------------
Confidence                         2223467889999999998767899999999999999998765433210                  


Q ss_pred             CCCCccceeEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 004290          275 HGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       275 ~g~~~~~i~~v~~spd-g~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ..+. ..+++++|+|+ +++|++|+.|+.|++||++++
T Consensus       211 ~~~~-~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~  247 (344)
T 4gqb_B          211 SAPG-YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST  247 (344)
T ss_dssp             ---C-CCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred             ceee-ccceeeeecCCCCcceEEeccCCcEEEEECCCC
Confidence            1122 24899999995 567889999999999998873

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.7e-42  Score=363.04  Aligned_cols=211  Identities=18%  Similarity=0.180  Sum_probs=159.4

Q ss_pred             eeccccCceEEEEeCCCCCEEEEEeC------CCcEEEEeCCCCeEEE----EEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004290           45 ELEGHQGCVNAISWNSKGSLLISGSD------DTHINVWSYSSRKLLH----SIETGHSANVFCTKFVPETSDELVVSGA  114 (763)
Q Consensus        45 ~l~gH~~~V~~l~fsp~g~~Lasgs~------D~~v~iWd~~~~~~~~----~~~~~h~~~V~~v~~~p~~~~~~l~s~s  114 (763)
                      ...+|...|++|+|+|||++||+|+.      |+.|++|+..++....    .. .+|...|.+++|+|+  + .+++++
T Consensus        37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~~s~d--~-~~l~~s  112 (357)
T 4g56_B           37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAG-VQTEAGVTDVAWVSE--K-GILVAS  112 (357)
T ss_dssp             ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEE-EECSSCEEEEEEETT--T-EEEEEE
T ss_pred             CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEeccc-CCCCCCEEEEEEcCC--C-CEEEEE
Confidence            34579999999999999999999997      7789999987765322    22 468889999999998  4 566788


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      .||+|+|||+.+++...      .......+|.+.|++|+|+| ++.+|++++.|++|++||+++++.            
T Consensus       113 ~dg~v~lWd~~~~~~~~------~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~------------  173 (357)
T 4g56_B          113 DSGAVELWEILEKESLL------VNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAV------------  173 (357)
T ss_dssp             TTSCEEEC--------C------CCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEE------------
T ss_pred             CCCEEEEeeccccceeE------EEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcE------------
Confidence            99999999998754221      11234457999999999999 668999999999999999988652            


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (763)
                                   +.....|...|++++|+|++..++++++.|+.|++||+++++....+..                  
T Consensus       174 -------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~------------------  222 (357)
T 4g56_B          174 -------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF------------------  222 (357)
T ss_dssp             -------------EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC------------------
T ss_pred             -------------EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee------------------
Confidence                         1222457788999999998667899999999999999998765432210                  


Q ss_pred             CCCCccceeEEEEcCCC-CEEEEEeCCCeEEEEECCC
Q 004290          275 HGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       275 ~g~~~~~i~~v~~spdg-~~l~~~s~d~~i~iwd~~~  310 (763)
                      ..+.. .+++++|+|++ .+|++++.|+.|++||+.+
T Consensus       223 ~~~~~-~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~  258 (357)
T 4g56_B          223 CASDT-IPTSVTWHPEKDDTFACGDETGNVSLVNIKN  258 (357)
T ss_dssp             TTCCS-CEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred             ccccc-cccchhhhhcccceEEEeecccceeEEECCC
Confidence            11222 59999999975 6788899999999999877

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.4e-40  Score=375.45  Aligned_cols=356  Identities=22%  Similarity=0.323  Sum_probs=288.5

Q ss_pred             cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p  103 (763)
                      ...++.+++|+   ...+.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+ .+|...|.+++|+|
T Consensus       198 ~~~d~~v~~w~---~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~-~~~~~~v~~v~~~~  272 (577)
T 2ymu_A          198 ASDDKTVKLWN---RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVNGVAFRP  272 (577)
T ss_dssp             EETTSEEEEEC---TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEE-CCCSSCEEEEEECT
T ss_pred             EcCCCEEEEEe---CCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEE-ecCCCCEEEEEEcC
Confidence            34567888887   345778889999999999999999999999999999999996 46677777 79999999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (763)
Q Consensus       104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~  183 (763)
                      +  +..|++++.|+.|++||...           ..+..+.+|...|.+++|+| ++.+|++++.|+.|++||+....  
T Consensus       273 d--~~~l~~~~~d~~i~~w~~~~-----------~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~--  336 (577)
T 2ymu_A          273 D--GQTIASASDDKTVKLWNRNG-----------QLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQH--  336 (577)
T ss_dssp             T--SSEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCE--
T ss_pred             C--CCEEEEEeCCCEEEEEeCCC-----------cEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe--
Confidence            9  79999999999999999763           34677889999999999999 66899999999999999976532  


Q ss_pred             CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004290          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (763)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (763)
                                              +.....|...|.+++|+|+ +++|++|+.|+.|++||.. ++.+            
T Consensus       337 ------------------------~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~v~~~~~~-~~~~------------  378 (577)
T 2ymu_A          337 ------------------------LQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRN-GQLL------------  378 (577)
T ss_dssp             ------------------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETT-CCEE------------
T ss_pred             ------------------------eEEEeCCCCCEEEEEECCC-CCEEEEEeCCCEEEEEcCC-CCEE------------
Confidence                                    1112346678999999997 7899999999999999964 2222            


Q ss_pred             ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCCCcccCCCCC
Q 004290          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIH  343 (763)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  343 (763)
                       ..+       .+|.. .|++++|+|+|++|++++.|+.|++||... +.......+...+..++|+|+...+.....  
T Consensus       379 -~~~-------~~~~~-~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~--  446 (577)
T 2ymu_A          379 -QTL-------TGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASASD--  446 (577)
T ss_dssp             -EEE-------ECCSS-CEEEEEECTTSSCEEEEETTSEEEEECTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred             -EEe-------cCCCC-CeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEEEecCCCCCeEEEEECCCCCEEEEEcC--
Confidence             111       23444 599999999999999999999999999654 444455566677777888886432210000  


Q ss_pred             cccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccch
Q 004290          344 DFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDA  423 (763)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  423 (763)
                                                                                                      
T Consensus       447 --------------------------------------------------------------------------------  446 (577)
T 2ymu_A          447 --------------------------------------------------------------------------------  446 (577)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhcccCCCCCC
Q 004290          424 QMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGG  503 (763)
Q Consensus       424 ~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (763)
                                                                                                      
T Consensus       447 --------------------------------------------------------------------------------  446 (577)
T 2ymu_A          447 --------------------------------------------------------------------------------  446 (577)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhhhhccccCCCCCCCCcccccccccCCcceeeeccCCCc
Q 004290          504 ARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSA  583 (763)
Q Consensus       504 ~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~  583 (763)
                                                                                                      
T Consensus       447 --------------------------------------------------------------------------------  446 (577)
T 2ymu_A          447 --------------------------------------------------------------------------------  446 (577)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCcccccccceEEeeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEE
Q 004290          584 RETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIK  663 (763)
Q Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~  663 (763)
                                        ...+.+ |....+.++.+.+|...++++.    |+||+++||+|+.|++|+|||. ++++++
T Consensus       447 ------------------d~~v~~-w~~~~~~~~~~~~~~~~v~~~~----~spd~~~las~~~d~~i~iw~~-~~~~~~  502 (577)
T 2ymu_A          447 ------------------DKTVKL-WNRNGQLLQTLTGHSSSVRGVA----FSPDGQTIASASDDKTVKLWNR-NGQLLQ  502 (577)
T ss_dssp             ------------------TSEEEE-EETTSCEEEEEECCSSCEEEEE----ECTTSCEEEEEETTSEEEEEET-TSCEEE
T ss_pred             ------------------CCEEEE-EECCCCEEEEEcCCCCCEEEEE----EcCCCCEEEEEeCCCEEEEEcC-CCCEEE
Confidence                              000000 1112335667889999998877    9999999999999999999995 799999


Q ss_pred             EEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccCCCCCCCh
Q 004290          664 MLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT  715 (763)
Q Consensus       664 ~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~g~~~~~~  715 (763)
                      .+.+|.+.|++|+|+|++++|||++.|++|||||. +++.+..+.||.++++
T Consensus       503 ~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~  553 (577)
T 2ymu_A          503 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVW  553 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEE
T ss_pred             EEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEE
Confidence            99999999999999999999999999999999996 6778889999999875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.6e-40  Score=356.91  Aligned_cols=209  Identities=20%  Similarity=0.304  Sum_probs=168.3

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCC------------------CceEEEEEeeCCCCcE
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS------------------ANVFCTKFVPETSDEL  109 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~------------------~~V~~v~~~p~~~~~~  109 (763)
                      +|.+.|++++|+|+|++||+|+ |++++||++.+++.+..+ ..|.                  ..|.+++|+|+  +++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--g~~  137 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--GKF  137 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECTT--SSE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECCC--CCE
Confidence            6999999999999999999987 689999999999988877 4443                  24999999999  799


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004290          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (763)
Q Consensus       110 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  189 (763)
                      |++|+.|+.|++||+.++          +.+..+.+|...|.+++|+| ++.+|++++.|++|++||+++++..      
T Consensus       138 l~s~~~d~~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~------  200 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENR----------KIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCS------  200 (393)
T ss_dssp             EEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE------
T ss_pred             EEEEcCCCeEEEEECCCC----------cEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeE------
Confidence            999999999999999863          34677889999999999999 6689999999999999999886521      


Q ss_pred             CcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccc
Q 004290          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (763)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  269 (763)
                           ..+               .+...+.+++|+|.++.+|++|+.|+.|++||++++..+..+..             
T Consensus       201 -----~~~---------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~-------------  247 (393)
T 1erj_A          201 -----LTL---------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS-------------  247 (393)
T ss_dssp             -----EEE---------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------
T ss_pred             -----EEE---------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc-------------
Confidence                 111               12346899999996589999999999999999998754432211             


Q ss_pred             ccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       270 ~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ......+|.. .|++++|+|+|++|++++.|+.|++||+.+.
T Consensus       248 ~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          248 ENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             -----CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             cccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            0111134555 6999999999999999999999999999873

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.5e-40  Score=345.14  Aligned_cols=213  Identities=18%  Similarity=0.290  Sum_probs=178.8

Q ss_pred             hccccceeeccccCceEEEEeCCCC-CEEEEEeCCCcEEEEeCCC-----CeEEEEEccCCCCceEEEEEeeCCCCcEEE
Q 004290           38 RRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSS-----RKLLHSIETGHSANVFCTKFVPETSDELVV  111 (763)
Q Consensus        38 ~~~~~~~~l~gH~~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~-----~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~  111 (763)
                      +.+.+..+|+||.+.|++++|+|++ ++|+||+.|++|++||+.+     +..+..+ .+|...|.+++|+|+  +.+|+
T Consensus         5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~d--g~~l~   81 (319)
T 3frx_A            5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTAD--GAYAL   81 (319)
T ss_dssp             EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECTT--SSEEE
T ss_pred             eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECCC--CCEEE
Confidence            3466778899999999999999965 8999999999999999864     3346667 799999999999999  79999


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004290          112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  191 (763)
Q Consensus       112 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  191 (763)
                      +|+.|++|++||+.++          +++..+.+|...|.+++|+| ++.+|++++.|++|++||++...          
T Consensus        82 s~s~D~~v~~wd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~----------  140 (319)
T 3frx_A           82 SASWDKTLRLWDVATG----------ETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQC----------  140 (319)
T ss_dssp             EEETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSCE----------
T ss_pred             EEeCCCEEEEEECCCC----------CeeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe----------
Confidence            9999999999999873          34778899999999999999 66899999999999999986432          


Q ss_pred             ccceEEEecCCCceeeccCCCCCccceEEEEEeCCC-----CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004290          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-----PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (763)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-----~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (763)
                                      +....+|...|.+++|.|..     +.+|++++.|+.|++||+++.+....+            
T Consensus       141 ----------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~------------  192 (319)
T 3frx_A          141 ----------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF------------  192 (319)
T ss_dssp             ----------------EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE------------
T ss_pred             ----------------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee------------
Confidence                            11123567789999999852     348999999999999999875432211            


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                              .+|.. .|++++|+|+|++|++++.|+.|++||+.++
T Consensus       193 --------~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          193 --------IGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             --------CCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             --------cCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence                    34555 6999999999999999999999999999873

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.6e-40  Score=373.63  Aligned_cols=242  Identities=21%  Similarity=0.335  Sum_probs=198.3

Q ss_pred             cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p  103 (763)
                      ...++.+++|+.   ..+.+..+.+|...|++++|+|++++|++++.|+.|++||.. ++.+..+ .+|...|.+++|+|
T Consensus       239 ~~~d~~i~~w~~---~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~  313 (577)
T 2ymu_A          239 ASDDKTVKLWNR---NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSP  313 (577)
T ss_dssp             EETTSCEEEECT---TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECT
T ss_pred             EeCCCEEEEEeC---CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEE-ecCCCCeEEEEECC
Confidence            345678888873   456788899999999999999999999999999999999964 5667777 79999999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (763)
Q Consensus       104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~  183 (763)
                      +  +.+|++++.|+.|++||...           ..+..+.+|...|.+++|+| ++.++++++.||.|++||.....  
T Consensus       314 ~--~~~l~t~~~d~~i~~w~~~~-----------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~~~--  377 (577)
T 2ymu_A          314 D--GQTIASASDDKTVKLWNRNG-----------QHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQL--  377 (577)
T ss_dssp             T--SSEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTCCE--
T ss_pred             C--CCEEEEEeCCCeEEEEeCCC-----------CeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCCCE--
Confidence            9  79999999999999999874           33677888999999999999 67899999999999999953221  


Q ss_pred             CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004290          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (763)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (763)
                                              +.....|...|.+++|+|+ +++|++++.|+.|++||.. ++.+.           
T Consensus       378 ------------------------~~~~~~~~~~v~~~~~s~d-g~~l~~~~~d~~v~~~~~~-~~~~~-----------  420 (577)
T 2ymu_A          378 ------------------------LQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRN-GQLLQ-----------  420 (577)
T ss_dssp             ------------------------EEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEECTT-CCEEE-----------
T ss_pred             ------------------------EEEecCCCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCC-CCEEE-----------
Confidence                                    1112246678999999997 7899999999999999964 22211           


Q ss_pred             ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCC
Q 004290          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN  334 (763)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~  334 (763)
                        .+       .+|.. .|++++|+|++++|++++.|+.|++||... +.......+...+..++|+|+..
T Consensus       421 --~~-------~~~~~-~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~  480 (577)
T 2ymu_A          421 --TL-------TGHSS-SVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQ  480 (577)
T ss_dssp             --EE-------ECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSC
T ss_pred             --Ee-------cCCCC-CeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCCC
Confidence              11       23544 599999999999999999999999999754 55555666777788888988643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-40  Score=345.48  Aligned_cols=224  Identities=14%  Similarity=0.171  Sum_probs=171.9

Q ss_pred             hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEccC-CCCceEEEEEeeCCCCcEEEEEe
Q 004290           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETG-HSANVFCTKFVPETSDELVVSGA  114 (763)
Q Consensus        38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~--~~~~~~~~~-h~~~V~~v~~~p~~~~~~l~s~s  114 (763)
                      +.+++++.|++|.+.|++++|+|+  +||+|+.|++|+|||+.++  +.+..+..+ |...|.+++|+|+  +.+|++|+
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--~~~las~s   77 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH--TSLLAAGS   77 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT--SSEEEEEE
T ss_pred             cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC--CCEEEEEe
Confidence            456778899999999999999987  9999999999999999875  455555234 9999999999999  79999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      .|++|+|||+......   .....++..+.+|...|.+++|+| ++.+|++|+.|++|++||++.....           
T Consensus        78 ~D~~v~iw~~~~~~~~---~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~-----------  142 (330)
T 2hes_X           78 FDSTVSIWAKEESADR---TFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEE-----------  142 (330)
T ss_dssp             TTSCEEEEEC----------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCC-----------
T ss_pred             CCCcEEEEEcccCcCc---cccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCC-----------
Confidence            9999999999642110   001234667889999999999999 6789999999999999999643210           


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (763)
                                ...+....+|...|.+++|+|+ +.+|++|+.|++|++||.+++..           .++..+       
T Consensus       143 ----------~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~~-----------~~~~~~-------  193 (330)
T 2hes_X          143 ----------YECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDDW-----------ECVAVL-------  193 (330)
T ss_dssp             ----------CEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEE-----------EEEEEE-------
T ss_pred             ----------eEEEEEeccCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCe-----------eEEEEc-------
Confidence                      0112223457788999999997 78999999999999999875410           111111       


Q ss_pred             CCCCccceeEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 004290          275 HGRSSLHLTHVTFSPN--GEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       275 ~g~~~~~i~~v~~spd--g~~l~~~s~d~~i~iwd~~~  310 (763)
                      .+|.. .|.+++|+|+  +.+|++++.|++|++||+..
T Consensus       194 ~~h~~-~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          194 NGHEG-TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             CCCSS-CEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             cCCCC-cEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            45655 6999999998  77899999999999999876

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.3e-39  Score=344.75  Aligned_cols=213  Identities=20%  Similarity=0.283  Sum_probs=175.5

Q ss_pred             ccccceeeccccCceEEEEe-----CC-CCCEEEEEeCCCcEEEEeCCCC-------eEEEEEccCCCCceEEEEEeeCC
Q 004290           39 RLSQERELEGHQGCVNAISW-----NS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPET  105 (763)
Q Consensus        39 ~~~~~~~l~gH~~~V~~l~f-----sp-~g~~Lasgs~D~~v~iWd~~~~-------~~~~~~~~~h~~~V~~v~~~p~~  105 (763)
                      .+++..+|+||.+.|++++|     ++ ++++||||+.|++|+|||+.++       .....+ .+|...|.+++|+|+ 
T Consensus        10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~~-   87 (343)
T 2xzm_R           10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQE-   87 (343)
T ss_dssp             EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE-CCCSSCEEEEEECSS-
T ss_pred             EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh-ccCCCceEEEEECCC-
Confidence            35667889999999999999     76 9999999999999999998753       445566 799999999999999 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004290          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (763)
Q Consensus       106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~  185 (763)
                       +.+|++|+.|++|++||++++          .++..+.+|...|.+++|+| ++.+|++++.|++|++||+.....   
T Consensus        88 -~~~l~s~s~D~~v~lwd~~~~----------~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~---  152 (343)
T 2xzm_R           88 -NCFAISSSWDKTLRLWDLRTG----------TTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECK---  152 (343)
T ss_dssp             -TTEEEEEETTSEEEEEETTSS----------CEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEE---
T ss_pred             -CCEEEEEcCCCcEEEEECCCC----------cEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCce---
Confidence             799999999999999999873          34778889999999999999 668999999999999999874320   


Q ss_pred             CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC---------CcEEEEEeCCCcEEEEeCCCCCCCcccCC
Q 004290          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---------PHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (763)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~---------~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~  256 (763)
                                          ........|...|.+++|+|+.         +.+|++++.|+.|++||... +.      
T Consensus       153 --------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~------  205 (343)
T 2xzm_R          153 --------------------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QI------  205 (343)
T ss_dssp             --------------------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EE------
T ss_pred             --------------------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ce------
Confidence                                1112223567789999999973         26899999999999999432 11      


Q ss_pred             CCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                             ...+       .+|.. .|++++|+|+|++|++++.|+.|++||+..
T Consensus       206 -------~~~~-------~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          206 -------RYTF-------KAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             -------EEEE-------ECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             -------eEEE-------cCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence                   1111       33554 599999999999999999999999999855

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.4e-38  Score=334.18  Aligned_cols=224  Identities=21%  Similarity=0.304  Sum_probs=179.0

Q ss_pred             ccccchhhhhccccceeeccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCe-----EEEEEccCCCCceEEEEEe
Q 004290           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK-----LLHSIETGHSANVFCTKFV  102 (763)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~-----~~~~~~~~h~~~V~~v~~~  102 (763)
                      .+.++....+++.+..+|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+.+     ....+ .+|...|.+++|+
T Consensus        17 ~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s   95 (340)
T 4aow_A           17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVIS   95 (340)
T ss_dssp             ---------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEEC
T ss_pred             cEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEEC
Confidence            455566667788888999999999999999997 6899999999999999987643     45566 7999999999999


Q ss_pred             eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      |+  +.+|++++.|+.|++|+....          ........+...+..+.+++ .+.+|++++.|+.+++||+.....
T Consensus        96 ~d--g~~l~s~~~d~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~  162 (340)
T 4aow_A           96 SD--GQFALSGSWDGTLRLWDLTTG----------TTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCK  162 (340)
T ss_dssp             TT--SSEEEEEETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE
T ss_pred             CC--CCEEEEEcccccceEEeeccc----------ceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCce
Confidence            99  799999999999999999863          23555667888899999998 568889999999999999876531


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC-CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (763)
                                              .......|...+..++|+++. ..++++++.|+.|++||+++++.+..+       
T Consensus       163 ------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~-------  211 (340)
T 4aow_A          163 ------------------------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH-------  211 (340)
T ss_dssp             ------------------------EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE-------
T ss_pred             ------------------------EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe-------
Confidence                                    122233567788999998864 347889999999999999986543222       


Q ss_pred             CcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                                   .+|.. .|++++|+|++++|++++.|+.|++||+.+.
T Consensus       212 -------------~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          212 -------------IGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             -------------CCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             -------------cCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence                         34555 6999999999999999999999999998873

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2e-38  Score=393.62  Aligned_cols=250  Identities=21%  Similarity=0.346  Sum_probs=201.0

Q ss_pred             cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p  103 (763)
                      ...++.|++|+  ..+.+.+..+++|.+.|++++|+|+|++||+|+.|++|+|||+.+++.+..+ .+|...|.+++|+|
T Consensus       633 ~~~d~~i~vw~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~  709 (1249)
T 3sfz_A          633 CGADKTLQVFK--AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTN  709 (1249)
T ss_dssp             EETTSCEEEEE--TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECS
T ss_pred             EeCCCeEEEEE--CCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEec
Confidence            34578899998  5667788999999999999999999999999999999999999999999998 79999999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (763)
Q Consensus       104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~  183 (763)
                      +.++.++++|+.|+.|++||+.++          .+...+.+|.+.|.+++|+| ++.++++++.||.|++||+++++..
T Consensus       710 ~~~~~~l~sg~~d~~v~vwd~~~~----------~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~  778 (1249)
T 3sfz_A          710 KSNHLLLATGSNDFFLKLWDLNQK----------ECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANER  778 (1249)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTSS----------SEEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEE
T ss_pred             CCCceEEEEEeCCCeEEEEECCCc----------chhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCccc
Confidence            654779999999999999999873          34778889999999999999 6689999999999999999876421


Q ss_pred             CCC----------------------CCCC---------cccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEE
Q 004290          184 PPA----------------------GSSH---------QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL  232 (763)
Q Consensus       184 ~~~----------------------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~  232 (763)
                      ...                      ..-.         ......+|+...+..... ...+|...|.+++|+|+ +.+++
T Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~sp~-~~~l~  856 (1249)
T 3sfz_A          779 KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE-IHTGHHSTIQYCDFSPY-DHLAV  856 (1249)
T ss_dssp             EEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE-EECSSSSCCCEEEECSS-TTEEE
T ss_pred             ceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE-EcCCCCCceEEEEEcCC-CCEEE
Confidence            000                      0000         011233444444332211 12357788999999997 78999


Q ss_pred             EEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          233 VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       233 sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      +++.|+.|++||+.++..+..+                    .+|.. .|++++|+|+|++|++++.|+.|++|++.+
T Consensus       857 ~~~~dg~v~vwd~~~~~~~~~~--------------------~~h~~-~v~~v~~spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          857 IALSQYCVELWNIDSRLKVADC--------------------RGHLS-WVHGVMFSPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             EECSSSCEEEEETTTTEEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred             EEeCCCeEEEEEcCCCceeeec--------------------CCCcc-ceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence            9999999999999976543222                    34555 599999999999999999999999999754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.4e-38  Score=342.25  Aligned_cols=220  Identities=13%  Similarity=0.168  Sum_probs=174.6

Q ss_pred             ccccceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEE-ccCCCCceEEEEEeeCCCCcEEEEEeCC
Q 004290           39 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGD  116 (763)
Q Consensus        39 ~~~~~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~l~s~s~d  116 (763)
                      .+++.....+|...|+||+|+| ++++||+|+.||+|+|||+.+++....+ ..+|.+.|++|+|+|.. +.+|++|+.|
T Consensus       108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~-~~~l~s~s~D  186 (435)
T 4e54_B          108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN-TNQFYASSME  186 (435)
T ss_dssp             TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC-TTEEEEECSS
T ss_pred             ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC-CCEEEEEeCC
Confidence            4455667788999999999999 5679999999999999999877543332 25899999999999953 7899999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (763)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  196 (763)
                      |+|++||++....        ........+...+.+++|+| ++.+|++|+.||.|++||++...               
T Consensus       187 ~~v~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~---------------  242 (435)
T 4e54_B          187 GTTRLQDFKGNIL--------RVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKE---------------  242 (435)
T ss_dssp             SCEEEEETTSCEE--------EEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCB---------------
T ss_pred             CEEEEeeccCCce--------eEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcce---------------
Confidence            9999999985211        11122223445688999999 67899999999999999987542               


Q ss_pred             EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (763)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (763)
                                 +....+|...|++++|+|++..+|++|+.|+.|+|||+++.+....+.                 ...+
T Consensus       243 -----------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~-----------------~~~~  294 (435)
T 4e54_B          243 -----------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL-----------------YSLP  294 (435)
T ss_dssp             -----------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS-----------------BCCB
T ss_pred             -----------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE-----------------Eeee
Confidence                       222345778899999999877799999999999999999865432221                 1123


Q ss_pred             CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      |.. .|++|+|+|+|.+|++++.|+.|++||+.++.
T Consensus       295 h~~-~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~  329 (435)
T 4e54_B          295 HRH-PVNAACFSPDGARLLTTDQKSEIRVYSASQWD  329 (435)
T ss_dssp             CSS-CEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred             ccc-cccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence            554 59999999999999999999999999998854

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.9e-37  Score=333.53  Aligned_cols=219  Identities=12%  Similarity=0.193  Sum_probs=178.2

Q ss_pred             hhccccceeeccccCceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEc-cCCCCceEEEEEeeCCCCcEEEEEe
Q 004290           37 VRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGA  114 (763)
Q Consensus        37 ~~~~~~~~~l~gH~~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~l~s~s  114 (763)
                      ..++++.+.+.+|.+.|++++|+|++ ++||+|+.|+.|+|||+.+++....+. .+|...|.+++|+|+. +.+|++++
T Consensus        60 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~  138 (383)
T 3ei3_B           60 LKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN-TNQLFVSS  138 (383)
T ss_dssp             HTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE-EEEEEEEE
T ss_pred             ccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC-CCEEEEEe
Confidence            45677888999999999999999999 999999999999999999888777663 3799999999999942 68999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeee---cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  191 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  191 (763)
                      .|+.|++||+...           .+..+.   .|...|.+++|+| ++.+|++++.|+.|++||++...          
T Consensus       139 ~d~~i~iwd~~~~-----------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~----------  196 (383)
T 3ei3_B          139 IRGATTLRDFSGS-----------VIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLDGHE----------  196 (383)
T ss_dssp             TTTEEEEEETTSC-----------EEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETTSCE----------
T ss_pred             CCCEEEEEECCCC-----------ceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECCCCE----------
Confidence            9999999999852           234443   4458899999999 66899999999999999984221          


Q ss_pred             ccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccccc
Q 004290          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  271 (763)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (763)
                                      +.....|...|.+++|+|++..+|++++.|+.|++||+++.+...         .++..+    
T Consensus       197 ----------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---------~~~~~~----  247 (383)
T 3ei3_B          197 ----------------IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN---------SYIAEM----  247 (383)
T ss_dssp             ----------------EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT---------CEEEEE----
T ss_pred             ----------------EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc---------ceEEEe----
Confidence                            111224678899999999854499999999999999999753211         111111    


Q ss_pred             ccCCCCCccceeEEEEcC-CCCEEEEEeCCCeEEEEECCCCC
Q 004290          272 LSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       272 ~~~~g~~~~~i~~v~~sp-dg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                          +|.. .|++++|+| ++.+|++++.|+.|++||+.++.
T Consensus       248 ----~~~~-~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          248 ----PHEK-PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS  284 (383)
T ss_dssp             ----ECSS-CEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred             ----cCCC-ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence                2333 599999999 99999999999999999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-36  Score=322.52  Aligned_cols=223  Identities=17%  Similarity=0.267  Sum_probs=178.9

Q ss_pred             cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      ......|++|.+.|++++|+|+|++|++|+.|+.|+|||+.+++.+..+ .+|...|.+++|+|+  +++|++++.|+.|
T Consensus        22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~~~dg~i   98 (369)
T 3zwl_B           22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCF--TKYCVTGSADYSI   98 (369)
T ss_dssp             SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTTEE
T ss_pred             ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcCC--CCEEEEEeCCCeE
Confidence            4455678999999999999999999999999999999999999999998 799999999999998  7999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-----CcEEEEECCCCCCCCCCCCCCcccc
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      ++||+.++          ..+..+. |...|.+++|+| ++.++++++.+     +.|++||++........        
T Consensus        99 ~iwd~~~~----------~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~--------  158 (369)
T 3zwl_B           99 KLWDVSNG----------QCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHEL--------  158 (369)
T ss_dssp             EEEETTTC----------CEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE--------
T ss_pred             EEEECCCC----------cEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceee--------
Confidence            99999863          3355555 889999999999 66899999998     99999999887643111        


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC-CCCCcccCCCCCCCCccccccccccc
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLS  273 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (763)
                         ..........+. .......+.+++|+|+ +++|++++.|+.|++||+++ ...+..+                   
T Consensus       159 ---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------  214 (369)
T 3zwl_B          159 ---TKVSEEPIHKII-THEGLDAATVAGWSTK-GKYIIAGHKDGKISKYDVSNNYEYVDSI-------------------  214 (369)
T ss_dssp             ---EEECSSCSEEEE-CCTTCCCEEEEEECGG-GCEEEEEETTSEEEEEETTTTTEEEEEE-------------------
T ss_pred             ---cccccceeeecc-CCcCccceeEEEEcCC-CCEEEEEcCCCEEEEEECCCCcEeEEEE-------------------
Confidence               111100001111 1112238999999997 78999999999999999987 3222111                   


Q ss_pred             CCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       274 ~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                       .+|.. .|++++|+|++++|++++.|+.|++||+.++
T Consensus       215 -~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          215 -DLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             -ECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             -ecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence             22333 5999999999999999999999999999874

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-38  Score=340.00  Aligned_cols=243  Identities=16%  Similarity=0.225  Sum_probs=187.1

Q ss_pred             ccccccccchhhhhcc-ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC----CeEEEEEccCCCCceEEE
Q 004290           25 DVNHSLQMHSSLVRRL-SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS----RKLLHSIETGHSANVFCT   99 (763)
Q Consensus        25 ~~~~~~~~~~~~~~~~-~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~----~~~~~~~~~~h~~~V~~v   99 (763)
                      ..+..+++|+...... +++..+ +|...|++++|+|++++|++|+.|+.|++||+.+    .+.+..+ .+|...|.++
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~  119 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTV  119 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEE
T ss_pred             CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEE
Confidence            5677899998544332 244444 5899999999999999999999999999999987    3466666 7899999999


Q ss_pred             EEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (763)
Q Consensus       100 ~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~  179 (763)
                      +|+|+. +.+|++++.|+.|++||+.......... .......+..|...|.+++|+|+++.+|++++.||.|++||+++
T Consensus       120 ~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  197 (416)
T 2pm9_A          120 KFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPSNY-TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA  197 (416)
T ss_dssp             EECSSS-TTBEEEECSSSCEEBCBTTTTSSCTTTC-CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred             EEcCCC-CCEEEEEcCCCeEEEEECCCCccccccc-cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence            999984 6899999999999999998753110000 00112345679999999999996689999999999999999988


Q ss_pred             CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC---cEEEEeCCCCC-CCcccC
Q 004290          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLP-PLTSCQ  255 (763)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg---~i~iwd~~~~~-~~~~~~  255 (763)
                      ++..              ..+..     .....+|...|.+++|+|++..+|++++.|+   .|++||++++. .+..+ 
T Consensus       198 ~~~~--------------~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~-  257 (416)
T 2pm9_A          198 KKEV--------------IHLSY-----TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL-  257 (416)
T ss_dssp             TEEE--------------EEECC-----CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCC-
T ss_pred             CCcc--------------eEEec-----cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEe-
Confidence            6522              10000     0001233678999999998667999999999   99999999763 22211 


Q ss_pred             CCCCCCCcccccccccccCC-CCCccceeEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 004290          256 KRMSPPPCVNYFCPMHLSEH-GRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~v~~sp-dg~~l~~~s~d~~i~iwd~~~~  311 (763)
                                         . +|.. .|++++|+| ++++|++++.|+.|++||+.++
T Consensus       258 -------------------~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~  295 (416)
T 2pm9_A          258 -------------------NQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESA  295 (416)
T ss_dssp             -------------------CSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred             -------------------ecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence                               2 3544 599999999 9999999999999999998773

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-37  Score=336.28  Aligned_cols=236  Identities=11%  Similarity=0.160  Sum_probs=176.9

Q ss_pred             ccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeC----CCCe------EEEEEccC----------CCCceEEEEEeeCC
Q 004290           47 EGHQGCVNAISWNSKGS-LLISGSDDTHINVWSY----SSRK------LLHSIETG----------HSANVFCTKFVPET  105 (763)
Q Consensus        47 ~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~----~~~~------~~~~~~~~----------h~~~V~~v~~~p~~  105 (763)
                      ..|.+.|++++|+|+|+ +||+|+.|+.|++||+    .+++      ....+ ..          |...|.+++|+|+ 
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~-  119 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAEL-RHPFALSASSGKTTNQVTCLAWSHD-  119 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEE-ECCCCCC------CBCEEEEEECTT-
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccc-cccccccccccCCCCceEEEEEcCC-
Confidence            44669999999999999 9999999999999999    8887      44444 22          6789999999998 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004290          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (763)
Q Consensus       106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~  185 (763)
                       +.+|++++.||.|++||...           ..+..+.+|...|.+++|+| ++.+|++++.|+.|++||+++++... 
T Consensus       120 -~~~l~~~~~dg~i~i~~~~~-----------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~-  185 (425)
T 1r5m_A          120 -GNSIVTGVENGELRLWNKTG-----------ALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQ-  185 (425)
T ss_dssp             -SSEEEEEETTSCEEEEETTS-----------CEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEE-
T ss_pred             -CCEEEEEeCCCeEEEEeCCC-----------CeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEE-
Confidence             79999999999999999432           44778889999999999999 66899999999999999998775321 


Q ss_pred             CCCCCcccceEEEecCCCce--eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004290          186 AGSSHQECRNILLDLRCGAK--RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (763)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (763)
                                 .+.......  ............+.+++|+|+  ..+++++.|+.|++||+++++.+..+         
T Consensus       186 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~---------  243 (425)
T 1r5m_A          186 -----------HFELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPTGKL---------  243 (425)
T ss_dssp             -----------EECCC---------------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCSEEE---------
T ss_pred             -----------EeeccccCccceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCceeeee---------
Confidence                       000000000  000000111223788999996  47999999999999999987544322         


Q ss_pred             ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004290          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (763)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (763)
                                 .+|.. .|++++|+|++++|++++.|+.|++||+.++........+...+..++|+|+
T Consensus       244 -----------~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  300 (425)
T 1r5m_A          244 -----------IGHHG-PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD  300 (425)
T ss_dssp             -----------CCCSS-CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETT
T ss_pred             -----------ccCCC-ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCC
Confidence                       23444 5999999999999999999999999999987655555556667777778774

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.5e-37  Score=330.39  Aligned_cols=230  Identities=16%  Similarity=0.155  Sum_probs=175.0

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe------EEEEEccCCCCceEEEEEeeC--CCC---cE
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPE--TSD---EL  109 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~------~~~~~~~~h~~~V~~v~~~p~--~~~---~~  109 (763)
                      ...+.+++|.+.|++++|+|  ++|++|+.||.|+|||+.+++      .+..+ .+|...|.+++|+|+  .++   .+
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccE
Confidence            45678899999999999998  899999999999999999887      67777 689999999999997  116   79


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecc-----cCceeEEEEe----cCCCCE-EEEEeCCCcEEEEECCC
Q 004290          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-----TRRVKKLAVE----VGNPHV-VWSASEDGTLRQHDFRQ  179 (763)
Q Consensus       110 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~s----p~~~~~-l~s~s~dg~i~iwd~~~  179 (763)
                      |++++.|+.|++||+.......     ...+..+..|     ...|.+++|+    | ++.+ |++++.||.|++||++.
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETK-----KVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTC-----CEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred             EEEEcCCCCEEEEEccCCcccc-----cccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCc
Confidence            9999999999999998743110     0115667778     5999999999    8 5577 99999999999999988


Q ss_pred             ------CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcc
Q 004290          180 ------GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (763)
Q Consensus       180 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~  253 (763)
                            .+.....      ....+..       .+.....+...|.+++|+|+ + +|++++.|+.|++||+++++.+..
T Consensus       158 ~~~~~~~~~~~~~------~~~~~~~-------~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~  222 (397)
T 1sq9_A          158 FADESNSLTLNWS------PTLELQG-------TVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYN  222 (397)
T ss_dssp             SSSHHHHTTTCCC------CEEEEEE-------EECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred             cccccccceeecc------Ccceeee-------eeccccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCceeEE
Confidence                  4432100      0001100       01111345678999999997 5 999999999999999997654332


Q ss_pred             cCCCCCCCCcccccccccccCCCC---CccceeEEEEcCCCCEEEEEeCC---CeEEEEECCCCC
Q 004290          254 CQKRMSPPPCVNYFCPMHLSEHGR---SSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHAG  312 (763)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~g~---~~~~i~~v~~spdg~~l~~~s~d---~~i~iwd~~~~~  312 (763)
                      +..                 ..+|   .. .|++++|+|++++|++++.|   +.|++||+.++.
T Consensus       223 ~~~-----------------~~~h~~~~~-~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~  269 (397)
T 1sq9_A          223 FES-----------------QHSMINNSN-SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE  269 (397)
T ss_dssp             EEC-----------------CC---CCCC-CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred             Eec-----------------cccccccCC-ccceEEECCCCCEEEEEecCCCCceEEEEECCCCc
Confidence            210                 0113   33 69999999999999999999   999999998753

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-36  Score=330.20  Aligned_cols=186  Identities=16%  Similarity=0.200  Sum_probs=156.5

Q ss_pred             EEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEE
Q 004290           86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  165 (763)
Q Consensus        86 ~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s  165 (763)
                      ..+ .+|..+|++++|+|+  +.+|++|+.|++|++||+.++          .....+.+|.+.|.+++|+| ++.+|++
T Consensus       102 ~~l-~gh~~~V~~~~~~p~--~~~l~s~s~Dg~i~vwd~~~~----------~~~~~l~~h~~~V~~v~~~~-~~~~l~s  167 (410)
T 1vyh_C          102 YAL-SGHRSPVTRVIFHPV--FSVMVSASEDATIKVWDYETG----------DFERTLKGHTDSVQDISFDH-SGKLLAS  167 (410)
T ss_dssp             CEE-ECCSSCEEEEEECSS--SSEEEEEESSSCEEEEETTTC----------CCCEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred             Eee-cccCCcEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC----------cEEEEEeccCCcEEEEEEcC-CCCEEEE
Confidence            344 689999999999999  799999999999999999873          34678899999999999999 6689999


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeC
Q 004290          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (763)
Q Consensus       166 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~  245 (763)
                      |+.|++|++||+.+.+.                         +....+|...|.+++|+|+ +++|++|+.|++|++||+
T Consensus       168 gs~D~~i~iwd~~~~~~-------------------------~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~  221 (410)
T 1vyh_C          168 CSADMTIKLWDFQGFEC-------------------------IRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEV  221 (410)
T ss_dssp             EETTSCCCEEETTSSCE-------------------------EECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEET
T ss_pred             EeCCCeEEEEeCCCCce-------------------------eEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEC
Confidence            99999999999987642                         2334467889999999997 789999999999999999


Q ss_pred             CCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCe
Q 004290          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASK  325 (763)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  325 (763)
                      +++..+..+                    .+|.. .|++++|+|++.+|++++.|+.|++||+.++........+...+.
T Consensus       222 ~~~~~~~~~--------------------~~h~~-~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~  280 (410)
T 1vyh_C          222 QTGYCVKTF--------------------TGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE  280 (410)
T ss_dssp             TTCCEEEEE--------------------ECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             CCCcEEEEE--------------------eCCCc-cEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEE
Confidence            987543322                    34554 599999999999999999999999999998766555666677777


Q ss_pred             eeeeccC
Q 004290          326 IMSFTPT  332 (763)
Q Consensus       326 ~~~~~p~  332 (763)
                      .++|+|.
T Consensus       281 ~~~~~~~  287 (410)
T 1vyh_C          281 CISWAPE  287 (410)
T ss_dssp             EEEECCS
T ss_pred             EEEEcCc
Confidence            7777774

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-37  Score=340.06  Aligned_cols=233  Identities=14%  Similarity=0.168  Sum_probs=171.0

Q ss_pred             hccccceee-ccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCC---Ce---EEEEEccCCCCceEEEEEeeCCCCcE
Q 004290           38 RRLSQEREL-EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS---RK---LLHSIETGHSANVFCTKFVPETSDEL  109 (763)
Q Consensus        38 ~~~~~~~~l-~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~---~~---~~~~~~~~h~~~V~~v~~~p~~~~~~  109 (763)
                      .+.+++..| ++|.+.|++++|+| ++++||+|+.|++|+|||+.+   +.   ....+  +|...|.+++|+|+  +.+
T Consensus        50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~--~~~  125 (437)
T 3gre_A           50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPN--FDA  125 (437)
T ss_dssp             CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTT--SSE
T ss_pred             ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCC--CCE
Confidence            456778888 89999999999999 999999999999999999876   43   23333  58999999999998  799


Q ss_pred             EEEEeCCCcEEEEECCCC-CCCCCCCCCCCCceeee--c--ccCceeEEE--EecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          110 VVSGAGDAEVRLFNLSRF-SGRGLDDNAITPSALYQ--C--HTRRVKKLA--VEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       110 l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~--~--h~~~v~~l~--~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      |++|+.||.|++||+... .+..........+..+.  .  +...+.++.  ++| ++.+|++++.||.|++||+++++.
T Consensus       126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~  204 (437)
T 3gre_A          126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLER  204 (437)
T ss_dssp             EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCee
Confidence            999999999999999521 11110000000111111  1  455666666  445 568999999999999999988752


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (763)
                      .           ..+            ....|...|++++|+|+ +++|++|+.||.|++||+++++.+..+.       
T Consensus       205 ~-----------~~~------------~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------  253 (437)
T 3gre_A          205 L-----------QII------------ENSPRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFNVLIRSWS-------  253 (437)
T ss_dssp             E-----------EEE------------ECCGGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEEB-------
T ss_pred             e-----------EEE------------ccCCCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCccEEEEEe-------
Confidence            1           111            11125678999999997 7899999999999999999865433221       


Q ss_pred             cccccccccccCCCCCccceeEEEEc----CCCCEEEEEeCCCeEEEEECCCCCccceEee
Q 004290          263 CVNYFCPMHLSEHGRSSLHLTHVTFS----PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT  319 (763)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~i~~v~~s----pdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~  319 (763)
                                  .+|.. .|++++|+    |++.+|++++.|+.|++||+.++........
T Consensus       254 ------------~~~~~-~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  301 (437)
T 3gre_A          254 ------------FGDHA-PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFIN  301 (437)
T ss_dssp             ------------CTTCE-EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEES
T ss_pred             ------------cCCCC-ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEc
Confidence                        12333 59999665    4688999999999999999998654333333

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.3e-36  Score=315.66  Aligned_cols=168  Identities=17%  Similarity=0.224  Sum_probs=139.9

Q ss_pred             EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEE
Q 004290           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (763)
Q Consensus        84 ~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  163 (763)
                      ..+++ .+|...|.+++|+|+  +.+|++++.||+|++||+.++          ..+..+..|..+|.+++|+| ++++|
T Consensus         5 ~~~~~-~~h~~~V~~~~fsp~--~~~l~s~~~dg~v~lWd~~~~----------~~~~~~~~~~~~v~~~~~~~-~~~~l   70 (304)
T 2ynn_A            5 IKKTF-SNRSDRVKGIDFHPT--EPWVLTTLYSGRVELWNYETQ----------VEVRSIQVTETPVRAGKFIA-RKNWI   70 (304)
T ss_dssp             CEEEE-EEECSCEEEEEECSS--SSEEEEEETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEEEG-GGTEE
T ss_pred             eEEee-cCCCCceEEEEECCC--CCEEEEEcCCCcEEEEECCCC----------ceeEEeeccCCcEEEEEEeC-CCCEE
Confidence            34556 789999999999999  799999999999999999863          34678889999999999999 67899


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEE
Q 004290          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (763)
Q Consensus       164 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iw  243 (763)
                      ++|+.|++|++||+.+++..                         ....+|...|.+++|+|+ +.+|++|+.|++|++|
T Consensus        71 ~s~s~d~~i~vwd~~~~~~~-------------------------~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lW  124 (304)
T 2ynn_A           71 IVGSDDFRIRVFNYNTGEKV-------------------------VDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLW  124 (304)
T ss_dssp             EEEETTSEEEEEETTTCCEE-------------------------EEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEE
T ss_pred             EEECCCCEEEEEECCCCcEE-------------------------EEEeCCCCcEEEEEEcCC-CCEEEEECCCCeEEEE
Confidence            99999999999999887521                         122357788999999997 6899999999999999


Q ss_pred             eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 004290          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      |++++..+            ...+       .+|.. .|++++|+| ++.+|++++.|+.|++||+...
T Consensus       125 d~~~~~~~------------~~~~-------~~h~~-~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~  173 (304)
T 2ynn_A          125 NWENNWAL------------EQTF-------EGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS  173 (304)
T ss_dssp             EGGGTTEE------------EEEE-------CCCCS-CEEEEEECTTCTTEEEEEETTSEEEEEETTCS
T ss_pred             ECCCCcch------------hhhh-------cccCC-cEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence            99865321            1111       34555 599999999 6789999999999999998763

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.4e-36  Score=351.15  Aligned_cols=215  Identities=19%  Similarity=0.248  Sum_probs=178.6

Q ss_pred             cccceeeccccCceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCC-----eEEEEEccCCCCceEEEEEeeCCCCcEEEEE
Q 004290           40 LSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSG  113 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~  113 (763)
                      +++...|++|.+.|++|+|+|++ ++|+||+.|++|+|||+.+.     .....+ .+|...|.+++|+|+  +++|++|
T Consensus       372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~--g~~l~sg  448 (694)
T 3dm0_A          372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSSD--GQFALSG  448 (694)
T ss_dssp             SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEECTT--SSEEEEE
T ss_pred             cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEECCC--CCEEEEE
Confidence            45556799999999999999864 79999999999999999753     345566 799999999999999  7999999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004290          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (763)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  193 (763)
                      +.|++|+|||+.++          .....+.+|...|.+++|+| ++.+|++++.|++|++||+.....           
T Consensus       449 s~Dg~v~vwd~~~~----------~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~-----------  506 (694)
T 3dm0_A          449 SWDGELRLWDLAAG----------VSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECK-----------  506 (694)
T ss_dssp             ETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE-----------
T ss_pred             eCCCcEEEEECCCC----------cceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcc-----------
Confidence            99999999999863          34678889999999999999 668899999999999999764321           


Q ss_pred             ceEEEecCCCceeeccCCCCCccceEEEEEeCCC-CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccc
Q 004290          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (763)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (763)
                       .          .......+|...|.+++|+|+. ..+|++|+.|+.|++||+++.+....+                  
T Consensus       507 -~----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~------------------  557 (694)
T 3dm0_A          507 -Y----------TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL------------------  557 (694)
T ss_dssp             -E----------EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE------------------
T ss_pred             -e----------eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE------------------
Confidence             0          0111224577889999999974 258999999999999999876533222                  


Q ss_pred             cCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       273 ~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                        .+|.. .|++++|+|+|++|++++.|+.|++||+.++
T Consensus       558 --~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~  593 (694)
T 3dm0_A          558 --AGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEG  593 (694)
T ss_dssp             --CCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred             --cCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence              34555 5999999999999999999999999999874

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-36  Score=311.93  Aligned_cols=210  Identities=20%  Similarity=0.229  Sum_probs=172.2

Q ss_pred             hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (763)
Q Consensus        38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg  117 (763)
                      ...++.++|++|.+.|++++| |++++|++|+.||.|++||+.+++....+ ..|...|.+++|+|+  +.+|++++.|+
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~dg   81 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDSE--KELLLFGGKDT   81 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEETT--TTEEEEEETTS
T ss_pred             ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECCC--CCEEEEecCCC
Confidence            345788999999999999999 99999999999999999999999888888 689999999999999  79999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  197 (763)
                      .|++|++.....       ..++..+.+|...|.+++|.   +.++++++.||.|++||  ..+                
T Consensus        82 ~i~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~----------------  133 (313)
T 3odt_A           82 MINGVPLFATSG-------EDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGS----------------  133 (313)
T ss_dssp             CEEEEETTCCTT-------SCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTE----------------
T ss_pred             eEEEEEeeecCC-------CCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCc----------------
Confidence            999999986432       24467788999999999994   46899999999999999  221                


Q ss_pred             EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004290          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (763)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (763)
                               .+.....|...+.+++|.|.++++|++++.|+.|++||....               ...+       .+.
T Consensus       134 ---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---------------~~~~-------~~~  182 (313)
T 3odt_A          134 ---------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV---------------IKTF-------SGI  182 (313)
T ss_dssp             ---------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE---------------EEEE-------CSS
T ss_pred             ---------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce---------------EEEE-------ecc
Confidence                     011112466789999999855789999999999999994321               1111       121


Q ss_pred             CccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       278 ~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ....|++++|+|++. |++++.|+.|++||+.++
T Consensus       183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~  215 (313)
T 3odt_A          183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG  215 (313)
T ss_dssp             CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC
T ss_pred             CcccEEEEEEcCCCe-EEEccCCCeEEEEECCch
Confidence            222699999999998 999999999999998773

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.1e-36  Score=346.76  Aligned_cols=227  Identities=11%  Similarity=0.134  Sum_probs=186.5

Q ss_pred             ccccccchhhhhcc----ccceeeccccCc-eEEEEeCC--CCCEEEEEeCCCcEEEEeCCCC--------eEEEEEccC
Q 004290           27 NHSLQMHSSLVRRL----SQERELEGHQGC-VNAISWNS--KGSLLISGSDDTHINVWSYSSR--------KLLHSIETG   91 (763)
Q Consensus        27 ~~~~~~~~~~~~~~----~~~~~l~gH~~~-V~~l~fsp--~g~~Lasgs~D~~v~iWd~~~~--------~~~~~~~~~   91 (763)
                      +..+.+|+  ..+.    +....|.+|.+. |++++|+|  ++++||+|+.|+.|+|||+.++        +.+..+ ..
T Consensus        38 ~~~v~v~~--~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~  114 (615)
T 1pgu_A           38 GKSAFVRC--LDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QV  114 (615)
T ss_dssp             TTEEEEEE--CCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-EC
T ss_pred             CCeEEEEE--CCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchh-hc
Confidence            56788888  3455    788999999999 99999999  9999999999999999999755        566666 68


Q ss_pred             CCCceEEEEEeeCCCCcEEEEEeCC----CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe
Q 004290           92 HSANVFCTKFVPETSDELVVSGAGD----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  167 (763)
Q Consensus        92 h~~~V~~v~~~p~~~~~~l~s~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s  167 (763)
                      |...|.+++|+|+  +++|++++.+    +.|++||..            ..+..+.+|...|.+++|+|++..++++++
T Consensus       115 ~~~~v~~~~~s~~--~~~l~~~~~~~~~~~~v~~~d~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  180 (615)
T 1pgu_A          115 LAGPISDISWDFE--GRRLCVVGEGRDNFGVFISWDSG------------NSLGEVSGHSQRINACHLKQSRPMRSMTVG  180 (615)
T ss_dssp             CSSCEEEEEECTT--SSEEEEEECCSSCSEEEEETTTC------------CEEEECCSCSSCEEEEEECSSSSCEEEEEE
T ss_pred             ccccEEEEEEeCC--CCEEEEeccCCCCccEEEEEECC------------CcceeeecCCccEEEEEECCCCCcEEEEEe
Confidence            9999999999999  7999999988    689999843            347778899999999999996655899999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCcc---ceEEEEEeCCCCcEEEEEeCCCcEEEEe
Q 004290          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL---SLKSCDISSTRPHLLLVGGSDAFARLYD  244 (763)
Q Consensus       168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~p~~~~~l~sgs~Dg~i~iwd  244 (763)
                      .|+.|++||+.+.+..                         .....|..   .|.+++|+|+++++|++++.|+.|++||
T Consensus       181 ~d~~v~vwd~~~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd  235 (615)
T 1pgu_A          181 DDGSVVFYQGPPFKFS-------------------------ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD  235 (615)
T ss_dssp             TTTEEEEEETTTBEEE-------------------------EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred             CCCcEEEEeCCCccee-------------------------eeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence            9999999998776421                         11223555   8999999997468999999999999999


Q ss_pred             CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCc
Q 004290          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG  313 (763)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~  313 (763)
                      +++++.+..+..            +    ..+|.. .|++++|+ ++++|++++.|+.|++||+.++..
T Consensus       236 ~~~~~~~~~~~~------------~----~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~  286 (615)
T 1pgu_A          236 GKSGEFLKYIED------------D----QEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKC  286 (615)
T ss_dssp             TTTCCEEEECCB------------T----TBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred             CCCCCEeEEecc------------c----ccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence            998764433210            0    003444 59999999 999999999999999999998553

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-37  Score=361.81  Aligned_cols=231  Identities=10%  Similarity=0.072  Sum_probs=175.3

Q ss_pred             ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (763)
Q Consensus        47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~  126 (763)
                      .||.+.|++++|+|++++||+|+.||+|+|||..+.+....+  .|...|.+++|+|.   ++|++++.|++|++||+.+
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fspg---~~L~S~s~D~~v~lWd~~~   88 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVKG---IYLVVINAKDTVYVLSLYS   88 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEETT---TEEEEEETTCEEEEEETTT
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcCC---CEEEEEECcCeEEEEECCC
Confidence            489999999999999999999999999999999888776654  58889999999993   5999999999999999986


Q ss_pred             CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (763)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (763)
                      +          +++..+. |.+.|++++|+| ++.+|++|+.||+|++||+++.+..             .+...  ...
T Consensus        89 ~----------~~~~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~-------------~~~i~--~~~  141 (902)
T 2oaj_A           89 Q----------KVLTTVF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLS-------------SFKLD--NLQ  141 (902)
T ss_dssp             C----------SEEEEEE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEE-------------EEEEC--CHH
T ss_pred             C----------cEEEEEc-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccc-------------cceec--ccc
Confidence            3          2355564 778999999999 6789999999999999999876421             00000  000


Q ss_pred             ec-cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEE
Q 004290          207 SL-ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (763)
Q Consensus       207 ~~-~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v  285 (763)
                      .. ....+|...|++++|+|+++.+|++|+.|+.| +||+++++.+..+.....+..... .... ....+|.. .|+++
T Consensus       142 ~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~-~~~~-~~~~~h~~-~V~~v  217 (902)
T 2oaj_A          142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGG-DFSE-KTNEKRTP-KVIQS  217 (902)
T ss_dssp             HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCS-TTCC-CTTSCBCC-CEEEE
T ss_pred             ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCc-cccc-ccccccCC-CeEEE
Confidence            00 23356788999999999766799999999999 999998765544322110000000 0000 00112333 69999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCCc
Q 004290          286 TFSPNGEEVLLSYSGEHVYLMDVNHAGG  313 (763)
Q Consensus       286 ~~spdg~~l~~~s~d~~i~iwd~~~~~~  313 (763)
                      +|+|+|++|++++.|+.|++||+.+++.
T Consensus       218 ~fspdg~~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          218 LYHPNSLHIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             EECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence            9999999999999999999999998654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.3e-36  Score=320.14  Aligned_cols=231  Identities=12%  Similarity=0.186  Sum_probs=172.4

Q ss_pred             eeccccCceEEEEeCCC----CCEEEEEeCCCcEEEEeCCCCeEEEEEc----cCCCCceEEEEEeeCCC--CcEEEEEe
Q 004290           45 ELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETS--DELVVSGA  114 (763)
Q Consensus        45 ~l~gH~~~V~~l~fsp~----g~~Lasgs~D~~v~iWd~~~~~~~~~~~----~~h~~~V~~v~~~p~~~--~~~l~s~s  114 (763)
                      .+++|.+.|++++|+|+    ..++++++.++.|+|||+.+++.+..+.    ..|...|++++|+|+..  +.+|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            44589999999999984    4556666666799999999887665552    12668899999999842  46999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      .||.|++||+.++          +.+..+.+|...|.+++|+|.++.+|++++.||.|++||+++++..           
T Consensus        93 ~dg~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------  151 (366)
T 3k26_A           93 SRGIIRIINPITM----------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV-----------  151 (366)
T ss_dssp             TTCEEEEECTTTC----------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE-----------
T ss_pred             CCCEEEEEEchhc----------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE-----------
Confidence            9999999999863          4477788999999999999967789999999999999999876521           


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCC--CCC------Ccccc
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM--SPP------PCVNY  266 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~--~~~------~~~~~  266 (763)
                                 ..+.....|...|.+++|+|+ +++|++++.|+.|++||+++++....+....  .+.      .....
T Consensus       152 -----------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          152 -----------AIFGGVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             -----------EEECSTTSCSSCEEEEEECTT-SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             -----------EEecccccccCceeEEEECCC-CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence                       111222457789999999997 7899999999999999999865433221100  000      00000


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ..+......+|.. .|++++|+  +++|++++.|+.|++||+.+.
T Consensus       220 ~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~  261 (366)
T 3k26_A          220 HFPDFSTRDIHRN-YVDCVRWL--GDLILSKSCENAIVCWKPGKM  261 (366)
T ss_dssp             CCCSEEECSSCSS-CCCEEEEE--TTEEEEECSSSEEEEEEESST
T ss_pred             ccCccccccCCcc-eEEEEEEc--CCEEEEEecCCEEEEEeCCCc
Confidence            0000011123444 69999999  779999999999999999874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.9e-36  Score=374.21  Aligned_cols=256  Identities=19%  Similarity=0.217  Sum_probs=205.8

Q ss_pred             cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004290           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (763)
Q Consensus        42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i  121 (763)
                      ....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.+..+ .+|...|.+++|+|+  +++|++++.|+.|++
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~v  683 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSD--DSYIATCSADKKVKI  683 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEEE
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEe-ccCCCCEEEEEEecC--CCEEEEEeCCCeEEE
Confidence            34578899999999999999999999999999999999999999999 799999999999999  799999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC-CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  200 (763)
                      ||+.++          .++..+.+|...|.+++|+|+ +..++++++.|+.|++||+++++..                 
T Consensus       684 wd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~-----------------  736 (1249)
T 3sfz_A          684 WDSATG----------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR-----------------  736 (1249)
T ss_dssp             EETTTC----------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE-----------------
T ss_pred             EECCCC----------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh-----------------
Confidence            999873          447888899999999999995 3458999999999999999887521                 


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC-------------CCCccccc
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS-------------PPPCVNYF  267 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~  267 (763)
                              ....+|...|++++|+|+ +.+|++++.||.|++||++++.....+.....             ...++. +
T Consensus       737 --------~~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~  806 (1249)
T 3sfz_A          737 --------NTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS-W  806 (1249)
T ss_dssp             --------EEECCCSSCEEEEEECSS-TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC-B
T ss_pred             --------heecCCCCCEEEEEEecC-CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE-E
Confidence                    122357789999999997 78999999999999999987754332211100             000000 0


Q ss_pred             ccc-----------------------cccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCC
Q 004290          268 CPM-----------------------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS  324 (763)
Q Consensus       268 ~~~-----------------------~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~  324 (763)
                      .+.                       .....+|.. .|++++|+|+++++++++.|+.|++||+.++........+...+
T Consensus       807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v  885 (1249)
T 3sfz_A          807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS-TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWV  885 (1249)
T ss_dssp             CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS-CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC-ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccce
Confidence            000                       000114444 69999999999999999999999999999977666667778888


Q ss_pred             eeeeeccCCCCccc
Q 004290          325 KIMSFTPTLNGLEL  338 (763)
Q Consensus       325 ~~~~~~p~~~~~~~  338 (763)
                      ..++|+|+...+..
T Consensus       886 ~~v~~spdg~~l~s  899 (1249)
T 3sfz_A          886 HGVMFSPDGSSFLT  899 (1249)
T ss_dssp             EEEEECTTSSEEEE
T ss_pred             EEEEECCCCCEEEE
Confidence            99999998765543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.1e-36  Score=321.50  Aligned_cols=214  Identities=13%  Similarity=0.152  Sum_probs=167.4

Q ss_pred             ceeeccccCceEEEEeCCCCCE-EEEEeC---CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC-CCcEEEEEeCCC
Q 004290           43 ERELEGHQGCVNAISWNSKGSL-LISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDA  117 (763)
Q Consensus        43 ~~~l~gH~~~V~~l~fsp~g~~-Lasgs~---D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~-~~~~l~s~s~dg  117 (763)
                      .+.+++|.+.|++++|+|++.. +++|+.   |+.|+|||+.+++.......+|...|.+++|+|+. ++.+|++|+.|+
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            4556889999999999999964 456665   99999999999887655545899999999999982 148999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEE------ecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV------EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  191 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  191 (763)
                      .|++||+....         .++..+.+|...|.++.|      +| ++.+|++++.||.|++||+++++...       
T Consensus        91 ~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~-------  153 (357)
T 3i2n_A           91 NLHIWNLEAPE---------MPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPV-------  153 (357)
T ss_dssp             CEEEECTTSCS---------SCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCS-------
T ss_pred             eEEEEeCCCCC---------ccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcc-------
Confidence            99999998742         247788899999999966      55 66899999999999999999875221       


Q ss_pred             ccceEEEecCCCceeeccCCCC-CccceEEEE----EeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004290          192 ECRNILLDLRCGAKRSLADPPK-QTLSLKSCD----ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (763)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~----~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (763)
                          ..          +....+ ....+.+++    |+|+ +.+|++++.|+.|++||+++++....             
T Consensus       154 ----~~----------~~~~~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~-------------  205 (357)
T 3i2n_A          154 ----AN----------MEPVQGENKRDCWTVAFGNAYNQE-ERVVCAGYDNGDIKLFDLRNMALRWE-------------  205 (357)
T ss_dssp             ----EE----------ECCCTTSCCCCEEEEEEECCCC-C-CCEEEEEETTSEEEEEETTTTEEEEE-------------
T ss_pred             ----ee----------ccccCCCCCCceEEEEEEeccCCC-CCEEEEEccCCeEEEEECccCceeee-------------
Confidence                11          111111 134678888    6776 78999999999999999997643211             


Q ss_pred             cccccccCCCCCccceeEEEEcC---CCCEEEEEeCCCeEEEEECCC
Q 004290          267 FCPMHLSEHGRSSLHLTHVTFSP---NGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       267 ~~~~~~~~~g~~~~~i~~v~~sp---dg~~l~~~s~d~~i~iwd~~~  310 (763)
                              .++.. .|++++|+|   ++.+|++++.|+.|++||+.+
T Consensus       206 --------~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  243 (357)
T 3i2n_A          206 --------TNIKN-GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT  243 (357)
T ss_dssp             --------EECSS-CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred             --------cCCCC-ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence                    11333 599999999   999999999999999999877

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.9e-36  Score=320.08  Aligned_cols=224  Identities=15%  Similarity=0.161  Sum_probs=174.9

Q ss_pred             eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004290           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (763)
Q Consensus        46 l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd  123 (763)
                      ++.|.++|++++|+|++++||+|+.|+.|+|||+.+++  .+..+ .+|...|.+++|+|+  +++|++++.|+.|++||
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETT--TTEEEEEETTSCEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCC--CCEEEEEcCCCeEEEEE
Confidence            45699999999999999999999999999999999987  77777 789999999999998  79999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                      +.....        .....+..|...|.+++|+| ++.+|++++.|+.|++||++..+..           ...      
T Consensus        81 ~~~~~~--------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~-----------~~~------  134 (372)
T 1k8k_C           81 LKGRTW--------KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDW-----------WVC------  134 (372)
T ss_dssp             EETTEE--------EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTE-----------EEE------
T ss_pred             CCCCee--------eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcc-----------eee------
Confidence            976321        12334467899999999999 6689999999999999999876521           000      


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCC-----CCCCCcccccccccccCCCCC
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR-----MSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~  278 (763)
                          ......|...|.+++|+|+ +++|++++.|+.|++||++...........     .....++..+       .+|.
T Consensus       135 ----~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  202 (372)
T 1k8k_C          135 ----KHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-------SSSC  202 (372)
T ss_dssp             ----EEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-------CCCS
T ss_pred             ----eeeecccCCCeeEEEEcCC-CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec-------CCCC
Confidence                1111345678999999997 689999999999999998643211100000     0001111111       2344


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      . .|++++|+|++++|++++.|+.|++||+.++
T Consensus       203 ~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          203 G-WVHGVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             S-CEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             C-eEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            4 6999999999999999999999999998763

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-36  Score=331.20  Aligned_cols=222  Identities=16%  Similarity=0.288  Sum_probs=172.0

Q ss_pred             ccCceEEEEeCCCCC-EEEEE----------eCCCcEEEEeCCCCe---EEEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004290           49 HQGCVNAISWNSKGS-LLISG----------SDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (763)
Q Consensus        49 H~~~V~~l~fsp~g~-~Lasg----------s~D~~v~iWd~~~~~---~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s  114 (763)
                      +...|.+++|+|+|+ +||+|          +.|+.|+|||+.++.   .+..  ..|...|.+++|+|+  +.+|++++
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~~v~~~~~s~~--~~~l~~~~   86 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS--LQVDSKFNDLDWSHN--NKIIAGAL   86 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC--CCCSSCEEEEEECSS--SSCEEEEE
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE--EecCCceEEEEECCC--CCeEEEEc
Confidence            345789999999987 99999          899999999999875   3333  368899999999999  79999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      .|+.|++||+......      ...+..+.+|...|.+++|+|+++.+|++++.||.|++||+++.+......       
T Consensus        87 ~dg~v~vw~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------  153 (416)
T 2pm9_A           87 DNGSLELYSTNEANNA------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY-------  153 (416)
T ss_dssp             SSSCEEEECCSSTTSC------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC-------
T ss_pred             cCCeEEEeeccccccc------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc-------
Confidence            9999999999862211      134677889999999999999657899999999999999999875211000       


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (763)
                               ....+.....|...|.+++|+|+++.+|++++.|+.|++||+++++.+..+...              ...
T Consensus       154 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--------------~~~  210 (416)
T 2pm9_A          154 ---------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT--------------SPN  210 (416)
T ss_dssp             ---------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCC--------------CCS
T ss_pred             ---------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecc--------------ccc
Confidence                     000111224567889999999986789999999999999999987544332110              000


Q ss_pred             CCCCccceeEEEEcCCC-CEEEEEeCCC---eEEEEECCCC
Q 004290          275 HGRSSLHLTHVTFSPNG-EEVLLSYSGE---HVYLMDVNHA  311 (763)
Q Consensus       275 ~g~~~~~i~~v~~spdg-~~l~~~s~d~---~i~iwd~~~~  311 (763)
                      .+|.. .|++++|+|++ .+|++++.|+   .|++||++++
T Consensus       211 ~~~~~-~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~  250 (416)
T 2pm9_A          211 SGIKQ-QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA  250 (416)
T ss_dssp             SCCCC-CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred             cccCC-ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence            12233 69999999997 6899999998   9999999873

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.8e-36  Score=312.60  Aligned_cols=229  Identities=20%  Similarity=0.320  Sum_probs=197.9

Q ss_pred             CCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEE
Q 004290           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF  101 (763)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~  101 (763)
                      .+.+.++.+++|+....+......+++|...|.+++|++++.+|++|+.|++|+|||+.+++.+..+ ..|...+.+++|
T Consensus        52 ~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~-~~~~~~~~~~~~  130 (321)
T 3ow8_A           52 VTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSI-DAGPVDAWTLAF  130 (321)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCTTCCCCEEE
T ss_pred             EEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEE-eCCCccEEEEEE
Confidence            3456789999999666666677789999999999999999999999999999999999999999988 688889999999


Q ss_pred             eeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (763)
Q Consensus       102 ~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~  181 (763)
                      +|+  +++|++++.|+.|++||+..+          .....+..|...|.+++|+| ++.+|++++.||.|++||+++++
T Consensus       131 spd--g~~l~~g~~dg~v~i~~~~~~----------~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~  197 (321)
T 3ow8_A          131 SPD--SQYLATGTHVGKVNIFGVESG----------KKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGK  197 (321)
T ss_dssp             CTT--SSEEEEECTTSEEEEEETTTC----------SEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCC--CCEEEEEcCCCcEEEEEcCCC----------ceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCc
Confidence            999  799999999999999999863          33567778999999999999 67899999999999999998765


Q ss_pred             CCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC
Q 004290          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (763)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (763)
                      .                         +....+|...|.+++|+|+ +.+|++|+.|+.|++||++++.....+       
T Consensus       198 ~-------------------------~~~~~~h~~~v~~l~~spd-~~~l~s~s~dg~i~iwd~~~~~~~~~~-------  244 (321)
T 3ow8_A          198 L-------------------------LHTLEGHAMPIRSLTFSPD-SQLLVTASDDGYIKIYDVQHANLAGTL-------  244 (321)
T ss_dssp             E-------------------------EEEECCCSSCCCEEEECTT-SCEEEEECTTSCEEEEETTTCCEEEEE-------
T ss_pred             E-------------------------EEEEcccCCceeEEEEcCC-CCEEEEEcCCCeEEEEECCCcceeEEE-------
Confidence            2                         1122356778999999997 689999999999999999876533222       


Q ss_pred             CcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                                   .+|.. .|++++|+|++++|++++.|+.|++||+.++
T Consensus       245 -------------~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          245 -------------SGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             -------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             -------------cCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence                         34555 5999999999999999999999999998773

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=312.43  Aligned_cols=207  Identities=17%  Similarity=0.220  Sum_probs=171.0

Q ss_pred             ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE---ccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004290           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (763)
Q Consensus        47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~---~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd  123 (763)
                      ..|...|++++|+|++ .|++|+.||+|+|||+.+++.+..+   ..+|...|++++|+|+  +++|++|+.|++|++||
T Consensus        79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--g~~l~sgs~d~~i~iwd  155 (344)
T 4gqb_B           79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--GTQAVSGSKDICIKVWD  155 (344)
T ss_dssp             EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEE
T ss_pred             eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEE
Confidence            3467889999999985 6889999999999999988644332   2589999999999999  79999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                      +.++          +++..+.+|.+.|++++|+|++..+|++++.|++|++||+++++...                   
T Consensus       156 ~~~~----------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-------------------  206 (344)
T 4gqb_B          156 LAQQ----------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS-------------------  206 (344)
T ss_dssp             TTTT----------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE-------------------
T ss_pred             CCCC----------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceee-------------------
Confidence            9873          45788999999999999999777899999999999999999876320                   


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  283 (763)
                          ......+...+.+++|+|+++++|++|+.|+.|++||+++++.+..+                    .+|.. .|+
T Consensus       207 ----~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~--------------------~~h~~-~v~  261 (344)
T 4gqb_B          207 ----QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS--------------------AVHSQ-CVT  261 (344)
T ss_dssp             ----ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE--------------------ECCSS-CEE
T ss_pred             ----eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE--------------------cCCCC-CEE
Confidence                11112344568999999987889999999999999999987655433                    34555 599


Q ss_pred             EEEEcCCC-CEEEEEeCCCeEEEEECCC
Q 004290          284 HVTFSPNG-EEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       284 ~v~~spdg-~~l~~~s~d~~i~iwd~~~  310 (763)
                      +|+|+|++ ++|++++.|++|+|||+.+
T Consensus       262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~  289 (344)
T 4gqb_B          262 GLVFSPHSVPFLASLSEDCSLAVLDSSL  289 (344)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred             EEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence            99999998 5789999999999999876

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-36  Score=353.49  Aligned_cols=299  Identities=10%  Similarity=0.031  Sum_probs=195.2

Q ss_pred             CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEE-E---------EccCC
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-S---------IETGH   92 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~-~---------~~~~h   92 (763)
                      +...++.|++|+  +.+.+++..+. |.+.|++++|+|++++|++|+.||+|++||+.+++... .         ...+|
T Consensus        74 S~s~D~~v~lWd--~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h  150 (902)
T 2oaj_A           74 VINAKDTVYVLS--LYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR  150 (902)
T ss_dssp             EEETTCEEEEEE--TTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred             EEECcCeEEEEE--CCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC
Confidence            345688999998  45556777776 77899999999999999999999999999999887641 1         12579


Q ss_pred             CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee------------------cccCceeEEE
Q 004290           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ------------------CHTRRVKKLA  154 (763)
Q Consensus        93 ~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~------------------~h~~~v~~l~  154 (763)
                      .+.|.+++|+|+. +..|++|+.|+.| +||++...          ++..+.                  .|...|++++
T Consensus       151 ~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~----------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~  218 (902)
T 2oaj_A          151 LSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENE----------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL  218 (902)
T ss_dssp             CCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTE----------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred             CCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCc----------eEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence            9999999999963 5789999999999 99998632          233333                  3467899999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEECCCCCCCCC--C--CCCC-------------c-ccceEEEecC-------------CC
Q 004290          155 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPP--A--GSSH-------------Q-ECRNILLDLR-------------CG  203 (763)
Q Consensus       155 ~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~--~~~~-------------~-~~~~~~~~~~-------------~~  203 (763)
                      |+| ++.+|++++.||+|++||+++++.+..  .  ...+             . ....+.|...             ..
T Consensus       219 fsp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          219 YHP-NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             ECT-TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             EcC-CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            999 578999999999999999998764321  0  0000             1 0111111100             00


Q ss_pred             ------ceeecc--------------------------C-CCCCccceEEEEEeC---------CCCcEEEEEeCCCcEE
Q 004290          204 ------AKRSLA--------------------------D-PPKQTLSLKSCDISS---------TRPHLLLVGGSDAFAR  241 (763)
Q Consensus       204 ------~~~~~~--------------------------~-~~~~~~~v~~i~~~p---------~~~~~l~sgs~Dg~i~  241 (763)
                            ....+.                          . ...+...|.++.+.+         .++..+++++.|+.|+
T Consensus       298 ~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~  377 (902)
T 2oaj_A          298 SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIE  377 (902)
T ss_dssp             TTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEE
T ss_pred             CCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEE
Confidence                  000000                          0 001234566666654         1244788888899999


Q ss_pred             EEeCCCCCCCccc-------CCCCCCCCccccc--------------ccccccCCCCCccceeEEEEcCCCCEEEEEeCC
Q 004290          242 LYDRRMLPPLTSC-------QKRMSPPPCVNYF--------------CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG  300 (763)
Q Consensus       242 iwd~~~~~~~~~~-------~~~~~~~~~~~~~--------------~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d  300 (763)
                      +||+.++......       .....+..++...              ........||.. .+.+|+|+|++++|++|+.|
T Consensus       378 ~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~-~v~sv~~spdg~~laSgs~D  456 (902)
T 2oaj_A          378 TMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVR-TKRQKLPAEYGTAFITGHSN  456 (902)
T ss_dssp             EEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBC-CCCCCCCCSEEEEEEEEETT
T ss_pred             EEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcC-CCCcccccccCcEEEEecCC
Confidence            9998766422110       0000000000000              000011234544 47788899999999999999


Q ss_pred             CeEEEEECCCCCccc-eEe----------ecCCCCeeeeeccCCCCccc
Q 004290          301 EHVYLMDVNHAGGRA-MRY----------TVGDASKIMSFTPTLNGLEL  338 (763)
Q Consensus       301 ~~i~iwd~~~~~~~~-~~~----------~~~~~~~~~~~~p~~~~~~~  338 (763)
                      ++|++||+.++.... ..+          .+...+..++|+|+...++.
T Consensus       457 gtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAs  505 (902)
T 2oaj_A          457 GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAV  505 (902)
T ss_dssp             SEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEE
T ss_pred             CcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEE
Confidence            999999999864211 111          45567888999998665543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-36  Score=335.46  Aligned_cols=243  Identities=10%  Similarity=0.062  Sum_probs=178.7

Q ss_pred             cceeeccccCceEEEEeCCCC---------CEEEE-------------------EeCCCcEEEEeCCCCeEE----EEEc
Q 004290           42 QERELEGHQGCVNAISWNSKG---------SLLIS-------------------GSDDTHINVWSYSSRKLL----HSIE   89 (763)
Q Consensus        42 ~~~~l~gH~~~V~~l~fsp~g---------~~Las-------------------gs~D~~v~iWd~~~~~~~----~~~~   89 (763)
                      ...++. +.+.|.+|+|+|++         ++||+                   ++.|++|+|||+.+++..    ..+ 
T Consensus       126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l-  203 (524)
T 2j04_B          126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI-  203 (524)
T ss_dssp             CEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEE-
T ss_pred             ceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEE-
Confidence            333444 67899999999976         56666                   457889999999877532    334 


Q ss_pred             cCCCCceEEEEEeeC----CCCcEEEEEeCCCcEEEEECCCCCCCCC-CCCCCCCceeeecccCceeEEEEecCCCCEEE
Q 004290           90 TGHSANVFCTKFVPE----TSDELVVSGAGDAEVRLFNLSRFSGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVW  164 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~----~~~~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~  164 (763)
                      .+|.+.|.+++|+|+    .++.+|++++.||+|++||+..+..... ......+...+.+|...|++++|+| + ..|+
T Consensus       204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~la  281 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVV  281 (524)
T ss_dssp             EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEE
T ss_pred             EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEE
Confidence            567889999999996    2257999999999999999986432100 0001134557888999999999998 3 4899


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEE--EEeCCCC-cEEEEEeCCCcEE
Q 004290          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC--DISSTRP-HLLLVGGSDAFAR  241 (763)
Q Consensus       165 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~~p~~~-~~l~sgs~Dg~i~  241 (763)
                      +|+.||+|++||++++..+                        .....+|...|+++  +|+|+ + ++||+|+.|++|+
T Consensus       282 sgs~DgtV~lWD~~~~~~~------------------------~~~~~~H~~~V~sv~~~~s~~-g~~~laS~S~D~tvk  336 (524)
T 2j04_B          282 CGFKNGFVAEFDLTDPEVP------------------------SFYDQVHDSYILSVSTAYSDF-EDTVVSTVAVDGYFY  336 (524)
T ss_dssp             EEETTSEEEEEETTBCSSC------------------------SEEEECSSSCEEEEEEECCTT-SCCEEEEEETTSEEE
T ss_pred             EEeCCCEEEEEECCCCCCc------------------------eEEeecccccEEEEEEEcCCC-CCeEEEEeccCCeEE
Confidence            9999999999999875421                        11123577889999  56775 5 8999999999999


Q ss_pred             EEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc-cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeec
Q 004290          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS-LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV  320 (763)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~  320 (763)
                      |||+++++....+                    .+|.. ..|.+|+|+|+++.|++++.|++|++||++++.......++
T Consensus       337 lWD~~~~~~~~~~--------------------~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH  396 (524)
T 2j04_B          337 IFNPKDIATTKTT--------------------VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR  396 (524)
T ss_dssp             EECGGGHHHHCEE--------------------EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred             EEECCCCCccccc--------------------ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC
Confidence            9999875432211                    11211 13889999999999999999999999999997766666778


Q ss_pred             CCCCeeeeeccCC
Q 004290          321 GDASKIMSFTPTL  333 (763)
Q Consensus       321 ~~~~~~~~~~p~~  333 (763)
                      ...+..++|+|+.
T Consensus       397 ~~~V~sva~Sp~g  409 (524)
T 2j04_B          397 ETTITAIGVSRLH  409 (524)
T ss_dssp             SSCEEEEECCSSC
T ss_pred             CCceEEEEeCCCC
Confidence            8888899999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.1e-35  Score=309.60  Aligned_cols=227  Identities=11%  Similarity=0.093  Sum_probs=178.6

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~  128 (763)
                      |.+.|.+++|+|||++|+++..++.+.+|+.......... .+|...|.+++|+|+  +++|++++ |+.|++||+....
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~-dg~i~iw~~~~~~   83 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNP--TRHVYTGG-KGCVKVWDISHPG   83 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSS--SSEEEEEC-BSEEEEEETTSTT
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecC--CcEEEEcC-CCeEEEEECCCCC
Confidence            5678999999999999999888888888876665544444 479999999999999  79999998 9999999998643


Q ss_pred             CCCCCCCCCCCceeee--cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290          129 GRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (763)
                      ..       ..+..+.  .|...|.+++|+| ++.+|++++.||.|++||+++++..                       
T Consensus        84 ~~-------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~-----------------------  132 (337)
T 1gxr_A           84 NK-------SPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPR-----------------------  132 (337)
T ss_dssp             CC-------SCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--E-----------------------
T ss_pred             ce-------eeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcc-----------------------
Confidence            21       2233333  7899999999999 6689999999999999999876421                       


Q ss_pred             eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004290          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (763)
Q Consensus       207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~  286 (763)
                      .......+...|.+++|+|+ +++|++++.|+.|++||+++++.+..+                    .+|.. .|++++
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~--------------------~~~~~-~i~~~~  190 (337)
T 1gxr_A          133 IKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVRQF--------------------QGHTD-GASCID  190 (337)
T ss_dssp             EEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS-CEEEEE
T ss_pred             eeeecccCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeee--------------------ecccC-ceEEEE
Confidence            11112245678999999997 789999999999999999976543222                    22444 599999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004290          287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (763)
Q Consensus       287 ~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (763)
                      |+|++++|++++.|+.|++||+.++. ..........+..++|+|+.
T Consensus       191 ~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~v~~~~~s~~~  236 (337)
T 1gxr_A          191 ISNDGTKLWTGGLDNTVRSWDLREGR-QLQQHDFTSQIFSLGYCPTG  236 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTE-EEEEEECSSCEEEEEECTTS
T ss_pred             ECCCCCEEEEEecCCcEEEEECCCCc-eEeeecCCCceEEEEECCCC
Confidence            99999999999999999999999854 33444556667778888753

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=314.53  Aligned_cols=242  Identities=12%  Similarity=0.189  Sum_probs=184.7

Q ss_pred             cccccccchhhhhccccceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEc------------cCC
Q 004290           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIE------------TGH   92 (763)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~------------~~h   92 (763)
                      .+..+++|+  ....+....+++|.+.|++++|+| ++++||+|+.||.|+|||+.+++....+.            .+|
T Consensus        21 ~~~~~~v~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (408)
T 4a11_B           21 AESTRRVLG--LELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH   98 (408)
T ss_dssp             HHHHHHHHT--EEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred             ccCcceeec--cccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence            455667766  455567788899999999999999 99999999999999999999875443331            259


Q ss_pred             CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC--CEEEEEeCCC
Q 004290           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDG  170 (763)
Q Consensus        93 ~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~--~~l~s~s~dg  170 (763)
                      ...|.+++|+|+. +.+|++++.|+.|++||+...          .....+. +...+.++.|+|.+.  .++++++.||
T Consensus        99 ~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (408)
T 4a11_B           99 RYSVETVQWYPHD-TGMFTSSSFDKTLKVWDTNTL----------QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGP  166 (408)
T ss_dssp             SSCEEEEEECTTC-TTCEEEEETTSEEEEEETTTT----------EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSS
T ss_pred             CCcEEEEEEccCC-CcEEEEEeCCCeEEEeeCCCC----------ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCC
Confidence            9999999999953 789999999999999999863          2244444 788899999998533  4899999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 004290          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (763)
Q Consensus       171 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~  250 (763)
                      .|++||+++++..                         .....|...|.+++|+|++..+|++|+.|+.|++||+++...
T Consensus       167 ~v~~~d~~~~~~~-------------------------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~  221 (408)
T 4a11_B          167 KVQLCDLKSGSCS-------------------------HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG  221 (408)
T ss_dssp             SEEEEESSSSCCC-------------------------EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC
T ss_pred             eEEEEeCCCccee-------------------------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc
Confidence            9999999877532                         112246778999999998555799999999999999998752


Q ss_pred             -CcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          251 -LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       251 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                       +..+...... .    .........+|.. .|++++|+|++++|++++.|+.|++||+.++.
T Consensus       222 ~~~~~~~~~~~-~----~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (408)
T 4a11_B          222 CLITLDQHNGK-K----SQAVESANTAHNG-KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE  278 (408)
T ss_dssp             CSEECCTTTTC-S----CCCTTTSSCSCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             ccccccccccc-c----ceeeccccccccC-ceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence             2221110000 0    0000011123444 69999999999999999999999999999854

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.4e-34  Score=299.29  Aligned_cols=201  Identities=19%  Similarity=0.285  Sum_probs=157.5

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~  130 (763)
                      .+++|+||+++ +||+|. |++|+|||+.+++++..+. .+|...|++++|+|+  +++|++|+.|++|++||++++   
T Consensus        27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~--~~~l~sgs~Dg~v~iw~~~~~---   99 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQ---   99 (318)
T ss_dssp             TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSEEEEEETTTT---
T ss_pred             cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC--CCEEEEEECCCcEEEeecCCc---
Confidence            36789999886 777764 8999999999999887762 468889999999999  799999999999999999973   


Q ss_pred             CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccC
Q 004290          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (763)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (763)
                             +++..+.+|...+.++.+.+   .++++++.++.+++|+.......                        +..
T Consensus       100 -------~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~------------------------~~~  145 (318)
T 4ggc_A          100 -------KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHH------------------------VAT  145 (318)
T ss_dssp             -------EEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE------------------------EEE
T ss_pred             -------eeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCcee------------------------EEE
Confidence                   44788889999888877653   68999999999999998776421                        112


Q ss_pred             CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC
Q 004290          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (763)
Q Consensus       211 ~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd  290 (763)
                      ..+|...+..+.+.++ +++|++++.|+.|++||+++++.......                ....+.. .|..++++|+
T Consensus       146 ~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------------~~~~~~~-~v~~~~~~~~  207 (318)
T 4ggc_A          146 LSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPLQ----------------TFTQHQG-AVKAVAWCPW  207 (318)
T ss_dssp             EECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCBTTBSCCSE----------------EECCCCS-CEEEEEECTT
T ss_pred             EcCccCceEEEEEcCC-CCEEEEEecCcceeEEECCCCccccccee----------------eecccCC-ceEEEEecCC
Confidence            2356778999999997 68999999999999999998754321100                0012333 5999999998


Q ss_pred             CCEEE---EEeCCCeEEEEECCCC
Q 004290          291 GEEVL---LSYSGEHVYLMDVNHA  311 (763)
Q Consensus       291 g~~l~---~~s~d~~i~iwd~~~~  311 (763)
                      +..++   +++.++.|++||....
T Consensus       208 ~~~~~~~~~~~~~~~i~lwd~~~~  231 (318)
T 4ggc_A          208 QSNVLATGGGTSDRHIRIWNVCSG  231 (318)
T ss_dssp             STTEEEEEECTTTCEEEEEETTTC
T ss_pred             CCcEEEEEecCCCCEEEEEecccc
Confidence            76443   4456899999998773

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.8e-34  Score=314.21  Aligned_cols=201  Identities=18%  Similarity=0.296  Sum_probs=159.2

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~  130 (763)
                      .++.|+||++ ++||+|. |++|+|||..+++.+..+. .+|...|++|+|+|+  +++|++|+.||.|+|||+.++   
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd--g~~lasgs~Dg~v~iWd~~~~---  179 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQ---  179 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSCEEEEETTTT---
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC--CCEEEEEECCCeEEEEEcCCC---
Confidence            4678999975 5788775 8999999999998877662 467889999999999  799999999999999999873   


Q ss_pred             CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccC
Q 004290          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (763)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (763)
                             +++..+.+|...+.++++++   .++++|+.|+.+++||.+.....                        +..
T Consensus       180 -------~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~------------------------~~~  225 (420)
T 4gga_A          180 -------KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHH------------------------VAT  225 (420)
T ss_dssp             -------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE------------------------EEE
T ss_pred             -------cEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeeccccee------------------------eEE
Confidence                   44788899999999998864   79999999999999998875421                        112


Q ss_pred             CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC
Q 004290          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (763)
Q Consensus       211 ~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd  290 (763)
                      ..+|...+..+.|+|+ +.++++++.|+.|++||..+++.....         +..+       ..|.. .|.+++|+|+
T Consensus       226 ~~~h~~~~~~~~~~~~-g~~l~s~~~D~~v~i~~~~~~~~~~~~---------~~~~-------~~~~~-~V~~~~~~p~  287 (420)
T 4gga_A          226 LSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVP---------LQTF-------TQHQG-AVKAVAWCPW  287 (420)
T ss_dssp             EECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCCSSCSCC---------SEEE-------CCCSS-CEEEEEECTT
T ss_pred             ecccccceeeeeecCC-CCeeeeeeccccceEEeecccccccee---------eeee-------cccCC-ceeeeeeCCC
Confidence            2356778999999997 789999999999999999876532111         1110       22444 6999999997


Q ss_pred             CCE-EEEE--eCCCeEEEEECCCC
Q 004290          291 GEE-VLLS--YSGEHVYLMDVNHA  311 (763)
Q Consensus       291 g~~-l~~~--s~d~~i~iwd~~~~  311 (763)
                      +.. ++++  +.|++|++||+.++
T Consensus       288 ~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          288 QSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             CTTEEEEEECTTTCEEEEEETTTT
T ss_pred             cccEEEEEeecCCCEEEEEeCCcc
Confidence            654 4443  35999999999874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.1e-36  Score=320.97  Aligned_cols=229  Identities=12%  Similarity=0.095  Sum_probs=168.4

Q ss_pred             eeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004290           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (763)
Q Consensus        45 ~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~--~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw  122 (763)
                      .++.|.++|++++|+|+|++||+|+.|+.|+|||+.++  +.+..+ .+|...|.+++|+|+  +++|++++.|+.|++|
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~s~d~~v~vw   82 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPK--SNRIVTCSQDRNAYVY   82 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTT--TCCEEEEETTSSEEEC
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCC--CCEEEEEeCCCeEEEE
Confidence            34557789999999999999999999999999999988  666666 799999999999999  7999999999999999


Q ss_pred             ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (763)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (763)
                      |+..+..       ..+...+.+|...|.+++|+| ++.+|++++.|+.|++||++..+...                  
T Consensus        83 d~~~~~~-------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~------------------  136 (377)
T 3dwl_C           83 EKRPDGT-------WKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWW------------------  136 (377)
T ss_dssp             ------C-------CCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CC------------------
T ss_pred             EcCCCCc-------eeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccce------------------
Confidence            9987430       134667778999999999999 66899999999999999998875210                  


Q ss_pred             CceeeccCCCC-CccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccc
Q 004290          203 GAKRSLADPPK-QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (763)
Q Consensus       203 ~~~~~~~~~~~-~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  281 (763)
                          .+..... |...|.+++|+|+ +++|++++.|+.|++||++............. ............  .+|.. .
T Consensus       137 ----~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~-~  207 (377)
T 3dwl_C          137 ----VSKHLKRPLRSTILSLDWHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEASVW-GSRLPFNTVCAE--YPSGG-W  207 (377)
T ss_dssp             ----CCEEECSSCCSCEEEEEECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCSCSS-CSCCCEEEEEEC--CCCSS-S
T ss_pred             ----eeeEeecccCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEEEecccCCCcccccc-ccccchhhhhhc--ccCCc-e
Confidence                0011112 6788999999997 78999999999999999975442211100000 000000000000  14554 5


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       282 i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      |++++|+|++++|++++.|+.|++||+.++
T Consensus       208 v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          208 VHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             EEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            999999999999999999999999999884

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.4e-35  Score=316.47  Aligned_cols=190  Identities=15%  Similarity=0.188  Sum_probs=152.3

Q ss_pred             cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeE
Q 004290           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK  152 (763)
Q Consensus        73 ~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  152 (763)
                      .+..|+..+..+..++ .+|.+.|++++|+|+  +.+|++|+.|++|+|||+.++          .....+..|...|.+
T Consensus        47 ~~~~~~~~~~~~~~~l-~gH~~~V~~~~~sp~--~~~l~s~s~D~~v~iWd~~~~----------~~~~~~~~h~~~v~~  113 (380)
T 3iz6_a           47 TAVSFNPTDLVCCRTL-QGHSGKVYSLDWTPE--KNWIVSASQDGRLIVWNALTS----------QKTHAIKLHCPWVME  113 (380)
T ss_dssp             GCCCCCCCCCEEEEEE-CCCSSCEEEEEECTT--SSCEEEEETTSEEEEEETTTT----------EEEEEEECCCTTCCC
T ss_pred             cccccccceeEEeecc-cccccEEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC----------ccceEEecCCCCEEE
Confidence            4456777777888888 899999999999999  799999999999999999863          346788899999999


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEE
Q 004290          153 LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL  232 (763)
Q Consensus       153 l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~  232 (763)
                      ++|+| ++.+|++|+.|+.|++||+.......                  +.........+|...|.++.|.|+++..|+
T Consensus       114 ~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~------------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~  174 (380)
T 3iz6_a          114 CAFAP-NGQSVACGGLDSACSIFNLSSQADRD------------------GNMPVSRVLTGHKGYASSCQYVPDQETRLI  174 (380)
T ss_dssp             CEECT-TSSEEEECCSSSCCEEEECCCCSSCC------------------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred             EEECC-CCCEEEEeeCCCcEEEEECCCCcccc------------------CCccceeeccCCCcceEEEEEecCCCCEEE
Confidence            99999 67899999999999999997653210                  001112234567888999999998777899


Q ss_pred             EEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 004290          233 VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       233 sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s~d~~i~iwd~~~  310 (763)
                      +|+.|++|++||+++++.+..+...               ...+|.. .|.+++|+| ++.+|++|+.|+.|++||++.
T Consensus       175 s~s~D~~i~~wd~~~~~~~~~~~~~---------------~~~~h~~-~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~  237 (380)
T 3iz6_a          175 TGSGDQTCVLWDVTTGQRISIFGSE---------------FPSGHTA-DVLSLSINSLNANMFISGSCDTTVRLWDLRI  237 (380)
T ss_dssp             EECTTSCEEEECTTTCCEEEEECCC---------------SSSSCCS-CEEEEEECSSSCCEEEEEETTSCEEEEETTT
T ss_pred             EECCCCcEEEEEcCCCcEEEEeecc---------------cCCCCcc-CeEEEEeecCCCCEEEEEECCCeEEEEECCC
Confidence            9999999999999987654332110               1133544 599999987 889999999999999999875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.6e-34  Score=305.11  Aligned_cols=171  Identities=13%  Similarity=0.201  Sum_probs=140.8

Q ss_pred             eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE
Q 004290           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (763)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  162 (763)
                      +...++ .+|...|++++|+|+  +.+|++|+.||+|++||+.++          ..+..+..|...|.+++|+| ++.+
T Consensus        46 ~~~~~l-~gH~~~v~~~~~s~d--~~~l~s~s~Dg~v~iWd~~~~----------~~~~~~~~~~~~v~~~~~s~-~~~~  111 (340)
T 1got_B           46 RTRRTL-RGHLAKIYAMHWGTD--SRLLLSASQDGKLIIWDSYTT----------NKVHAIPLRSSWVMTCAYAP-SGNY  111 (340)
T ss_dssp             CEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTTEEEEEETTTC----------CEEEEEECSSSCEEEEEECT-TSSE
T ss_pred             hhheee-cCCCCceEEEEECCC--CCEEEEEeCCCcEEEEECCCC----------CcceEeecCCccEEEEEECC-CCCE
Confidence            445667 799999999999999  799999999999999999863          34677888999999999999 6689


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEE
Q 004290          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (763)
Q Consensus       163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~i  242 (763)
                      |++++.|+.|++||+.+....                     ........+|...|.++.|+++  ..+++++.|+.|++
T Consensus       112 l~s~~~d~~v~iw~~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~~~~--~~l~s~s~d~~i~~  168 (340)
T 1got_B          112 VACGGLDNICSIYNLKTREGN---------------------VRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCAL  168 (340)
T ss_dssp             EEEEETTCEEEEEETTTCSBS---------------------CEEEEEEECCSSCEEEEEEEET--TEEEEEETTSCEEE
T ss_pred             EEEEeCCCeEEEEECccCCCc---------------------ceeEEEecCCCccEEEEEECCC--CcEEEEECCCcEEE
Confidence            999999999999999875421                     0111122357788999999986  36999999999999


Q ss_pred             EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ||+++++.+..+                    .+|.. .|++++|+|++++|++++.|+.|++||+.++
T Consensus       169 wd~~~~~~~~~~--------------------~~h~~-~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~  216 (340)
T 1got_B          169 WDIETGQQTTTF--------------------TGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREG  216 (340)
T ss_dssp             EETTTTEEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EECCCCcEEEEE--------------------cCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            999987543322                    34555 5999999999999999999999999998773

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.8e-34  Score=298.47  Aligned_cols=186  Identities=15%  Similarity=0.196  Sum_probs=142.6

Q ss_pred             ceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC--CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~--~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      +..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+  .+.+..+ .+|..+|++++|+|..++.+|++|+.|++|+
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence            456889999999999999999999999999999999974  3567777 7999999999998642268999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC-CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      +||+..+..        ..+..+.+|...|.+++|+|+. +.+|++++.|++|++||++.....          ...   
T Consensus        81 iWd~~~~~~--------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~----------~~~---  139 (297)
T 2pm7_B           81 IWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT----------SPI---  139 (297)
T ss_dssp             EEEBSSSCB--------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB----------CCE---
T ss_pred             EEEcCCCce--------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce----------eee---
Confidence            999986421        2356678899999999999952 689999999999999999875311          000   


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                                ...+|...|.+++|+|+....      ++        .                             +  
T Consensus       140 ----------~~~~h~~~v~~~~~~p~~~~~------~~--------~-----------------------------~--  164 (297)
T 2pm7_B          140 ----------IIDAHAIGVNSASWAPATIEE------DG--------E-----------------------------H--  164 (297)
T ss_dssp             ----------EEECCSSCEEEEEECCCC----------------------------------------------------
T ss_pred             ----------eeecccCccceEeecCCcccc------cc--------c-----------------------------C--
Confidence                      112456678888888852100      00        0                             0  


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                            ...+++++|++++.|+.|++||++++
T Consensus       165 ------~~~~~~~~l~sgs~D~~v~lwd~~~~  190 (297)
T 2pm7_B          165 ------NGTKESRKFVTGGADNLVKIWKYNSD  190 (297)
T ss_dssp             -----------CCEEEEEETTSCEEEEEEETT
T ss_pred             ------CCCCCcceEEEEcCCCcEEEEEEcCC
Confidence                  01235788999999999999998763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.5e-35  Score=311.48  Aligned_cols=207  Identities=9%  Similarity=0.088  Sum_probs=139.5

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCC-------cEEEEeCCCCeE--------E--EEEccCCCCceEEEEEeeCCCCcEEEE
Q 004290           50 QGCVNAISWNSKGSLLISGSDDT-------HINVWSYSSRKL--------L--HSIETGHSANVFCTKFVPETSDELVVS  112 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~-------~v~iWd~~~~~~--------~--~~~~~~h~~~V~~v~~~p~~~~~~l~s  112 (763)
                      ..+|++++|+|||++||+|+.|.       .|+||++..+..        .  ..+ .+|...|.++++.+    ..+++
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l-~~~~~~v~s~~~~~----~~~~~   88 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFAL-EDNDDSPTAIDASK----GIILV   88 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEEC-CTTSCCCCEEEEET----TEEEE
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEc-cCCCCceEEEEeCC----CEEEE
Confidence            45899999999999999998644       599999875421        1  223 67888898887764    45665


Q ss_pred             E-----------eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEE--EEeCCCcEEEEECCC
Q 004290          113 G-----------AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW--SASEDGTLRQHDFRQ  179 (763)
Q Consensus       113 ~-----------s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~--s~s~dg~i~iwd~~~  179 (763)
                      |           +.|+.+++|++........... .........+...+.+++|+| ++++++  +++.|++|++||+++
T Consensus        89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~  166 (365)
T 4h5i_A           89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLT-SVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSD  166 (365)
T ss_dssp             ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEE-EECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTT
T ss_pred             EECCCccEEEEecCCCcEEEEEecCCCceEEEee-eeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCC
Confidence            5           4578899999876432110000 000111223456789999999 556654  445789999999988


Q ss_pred             CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004290          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (763)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~  259 (763)
                      .+..              ..        +    .|...|.+++|+|+ +++|++++.+ .+++|+..++..+...     
T Consensus       167 ~~~~--------------~~--------~----~~~~~V~~v~fspd-g~~l~s~s~~-~~~~~~~~~~~~~~~~-----  213 (365)
T 4h5i_A          167 LTEK--------------FE--------I----ETRGEVKDLHFSTD-GKVVAYITGS-SLEVISTVTGSCIARK-----  213 (365)
T ss_dssp             TEEE--------------EE--------E----ECSSCCCEEEECTT-SSEEEEECSS-CEEEEETTTCCEEEEE-----
T ss_pred             CcEE--------------EE--------e----CCCCceEEEEEccC-CceEEeccce-eEEEEEeccCcceeee-----
Confidence            7521              10        0    14457999999997 7899988855 5666666655422110     


Q ss_pred             CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC----eEEEEECCC
Q 004290          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE----HVYLMDVNH  310 (763)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~----~i~iwd~~~  310 (763)
                                   ...+|.. .|++++|+|+++++++++.|+    .+++|++..
T Consensus       214 -------------~~~~~~~-~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~  254 (365)
T 4h5i_A          214 -------------TDFDKNW-SLSKINFIADDTVLIAASLKKGKGIVLTKISIKS  254 (365)
T ss_dssp             -------------CCCCTTE-EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred             -------------ecCCCCC-CEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence                         0123443 599999999999999999876    677787665

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.9e-34  Score=311.63  Aligned_cols=246  Identities=13%  Similarity=0.121  Sum_probs=185.4

Q ss_pred             cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p  103 (763)
                      ...+..+++|+  ..+.+....+.+| ..+....|+|++++||+|+.|+.|+|||+.+++....+ .+|...|.+++|+|
T Consensus        74 ~~~d~~v~i~d--~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~  149 (420)
T 3vl1_A           74 ARLDGHDFLFN--TIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID-QAHVSEITKLKFFP  149 (420)
T ss_dssp             EEETTEEEEEE--CCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET-TSSSSCEEEEEECT
T ss_pred             EEcCCcEEEEE--ecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec-ccccCccEEEEECC
Confidence            34467888888  4444556666666 45556678999999999999999999999998887776 79999999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (763)
Q Consensus       104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~  183 (763)
                      +  +.+|++|+.|+.|++||+.++          ..+..+.+|...|.+++|+| ++.+|++++.||.|++||+++++..
T Consensus       150 ~--~~~l~s~s~d~~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~  216 (420)
T 3vl1_A          150 S--GEALISSSQDMQLKIWSVKDG----------SNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTI  216 (420)
T ss_dssp             T--SSEEEEEETTSEEEEEETTTC----------CCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             C--CCEEEEEeCCCeEEEEeCCCC----------cCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCcee
Confidence            9  799999999999999999863          34678889999999999999 6689999999999999999987643


Q ss_pred             CCCCCC--Cccc-ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCC
Q 004290          184 PPAGSS--HQEC-RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (763)
Q Consensus       184 ~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~  260 (763)
                      ......  +... ....+.....  .  .....+...+.+++|+|+ +++|++|+.||.|++||+++++.+..+.     
T Consensus       217 ~~~~~~~~~~~~v~~~~~~~~~~--~--~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----  286 (420)
T 3vl1_A          217 HTFNRKENPHDGVNSIALFVGTD--R--QLHEISTSKKNNLEFGTY-GKYVIAGHVSGVITVHNVFSKEQTIQLP-----  286 (420)
T ss_dssp             EEECBTTBTTCCEEEEEEEECCC--S--SCGGGCCCCCCTTCSSCT-TEEEEEEETTSCEEEEETTTCCEEEEEC-----
T ss_pred             EEeecCCCCCCCccEEEEecCCc--c--eeeecccCcccceEEcCC-CCEEEEEcCCCeEEEEECCCCceeEEcc-----
Confidence            111100  0000 0000000000  0  000112355677788896 7899999999999999999875432221     


Q ss_pred             CCcccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 004290          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       261 ~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~-~l~~~s~d~~i~iwd~~~~  311 (763)
                                    .+|.. .|++++|+|+++ +|++++.|+.|++||+.++
T Consensus       287 --------------~~~~~-~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  323 (420)
T 3vl1_A          287 --------------SKFTC-SCNSLTVDGNNANYIYAGYENGMLAQWDLRSP  323 (420)
T ss_dssp             --------------CTTSS-CEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred             --------------cccCC-CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence                          12333 599999999999 9999999999999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6.2e-34  Score=314.48  Aligned_cols=228  Identities=19%  Similarity=0.347  Sum_probs=175.4

Q ss_pred             cceeeccccCce-EEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           42 QERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        42 ~~~~l~gH~~~V-~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      ....|++|.+.| .++.|  ++++|++|+.||+|++||+.+++.+..+ .+|...|.+++|+|+  + +|++|+.||+|+
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~--~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHG--G-ILVSGSTDRTVR  186 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECST--T-EEEEEETTSCEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcCC--C-EEEEEeCCCCEE
Confidence            456899999885 66666  5789999999999999999999999999 799999999999988  4 999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEec-CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      +||+.++          .++..+.+|...|.+++|++ .++.++++++.||.|++||+++............ . .....
T Consensus       187 vwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~-~~~~~  254 (464)
T 3v7d_B          187 VWDIKKG----------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-Y-PLVFH  254 (464)
T ss_dssp             EEETTTT----------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-S-SEEES
T ss_pred             EEECCCC----------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-c-ceEee
Confidence            9999863          34778889999999999996 2568999999999999999998764422111110 0 01111


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                      ........+....+|...+.++.  ++ +++|++|+.|+.|++||+++++.+..+                    .+|..
T Consensus       255 ~~~~~~~~~~~~~~~~~~v~~~~--~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~--------------------~~~~~  311 (464)
T 3v7d_B          255 TPEENPYFVGVLRGHMASVRTVS--GH-GNIVVSGSYDNTLIVWDVAQMKCLYIL--------------------SGHTD  311 (464)
T ss_dssp             CGGGCTTEEEEECCCSSCEEEEE--EE-TTEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS
T ss_pred             ccCCCeEEEEEccCccceEEEEc--CC-CCEEEEEeCCCeEEEEECCCCcEEEEe--------------------cCCCC
Confidence            11111111223445677777774  43 579999999999999999976543322                    33544


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                       .|++++|+|++++|++++.|+.|++||+.++
T Consensus       312 -~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          312 -RIYSTIYDHERKRCISASMDTTIRIWDLENG  342 (464)
T ss_dssp             -CEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             -CEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence             5999999999999999999999999998773

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8.2e-35  Score=333.45  Aligned_cols=281  Identities=12%  Similarity=0.053  Sum_probs=185.2

Q ss_pred             cccccchhhhhccccceeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCC---ceEEEEEee
Q 004290           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVP  103 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~---~V~~v~~~p  103 (763)
                      ..+.+|+    ..+.+..+.+|...|++++|+|+++ +|++++.|+.|++||+.+++.+..+ .+|..   .|.+++|+|
T Consensus       142 ~~v~~~d----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~  216 (615)
T 1pgu_A          142 GVFISWD----SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSP  216 (615)
T ss_dssp             EEEEETT----TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECS
T ss_pred             cEEEEEE----CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee-cccCCCCceEEEEEECC
Confidence            4666776    3467788999999999999999998 8999999999999999999999998 78998   999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceee-e---cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-Q---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (763)
Q Consensus       104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~---~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~  179 (763)
                      +. +++|++++.|+.|++||+.++          +.+..+ .   .|...|.+++|+  ++.+|++++.|+.|++||+++
T Consensus       217 ~~-~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~  283 (615)
T 1pgu_A          217 DS-GEFVITVGSDRKISCFDGKSG----------EFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTT  283 (615)
T ss_dssp             TT-CCEEEEEETTCCEEEEETTTC----------CEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTT
T ss_pred             CC-CCEEEEEeCCCeEEEEECCCC----------CEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCC
Confidence            83 589999999999999999863          335666 5   899999999999  568999999999999999998


Q ss_pred             CCCCCCCCCC----------------------CcccceEEEecCCCceeeccCCCCC-----------------------
Q 004290          180 GSSCPPAGSS----------------------HQECRNILLDLRCGAKRSLADPPKQ-----------------------  214 (763)
Q Consensus       180 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  214 (763)
                      ++........                      .......+|++..+.  .+.....|                       
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~  361 (615)
T 1pgu_A          284 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE--VLKTISGHNKGITALTVNPLISGSYDGRIME  361 (615)
T ss_dssp             TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEE--EEEEECCCSSCEEEEETTTTEEEETTSCEEE
T ss_pred             CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCc--EEEEEeCCCCCEEEEEecCcEEECCCCeEEE
Confidence            7643211110                      011222334433211  12222334                       


Q ss_pred             ----------ccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCC-CCCC---------CCcccccc--cc-c
Q 004290          215 ----------TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK-RMSP---------PPCVNYFC--PM-H  271 (763)
Q Consensus       215 ----------~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~-~~~~---------~~~~~~~~--~~-~  271 (763)
                                ...|.+++|.+  +..|++++.|+.|++||+.+++....... ...+         ...+..+.  .. .
T Consensus       362 w~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  439 (615)
T 1pgu_A          362 WSSSSMHQDHSNLIVSLDNSK--AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI  439 (615)
T ss_dssp             TTTTEEECCCCSCEEEEECCS--TTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCE
T ss_pred             EEchhhcCcccCceEEEEECC--CcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCce
Confidence                      44455555522  34566666666666666554321100000 0000         00000000  00 0


Q ss_pred             ccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCCcc-ceEeecCCCCeeeeeccCC
Q 004290          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTL  333 (763)
Q Consensus       272 ~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~p~~  333 (763)
                      +....+. ..+++++|+  +++|++++. |+.|++||+.++... .....+...+..++|+|+.
T Consensus       440 ~~~~~~~-~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  500 (615)
T 1pgu_A          440 IKSVRLN-SPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE  500 (615)
T ss_dssp             EEEEECS-SCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS
T ss_pred             eeecccC-CCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCC
Confidence            0000122 258899998  889999999 999999999885422 2333445666777777753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.9e-34  Score=315.32  Aligned_cols=205  Identities=22%  Similarity=0.374  Sum_probs=169.9

Q ss_pred             ccccceeeccccCce-EEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290           39 RLSQERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (763)
Q Consensus        39 ~~~~~~~l~gH~~~V-~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg  117 (763)
                      +.+....|++|.+.| .++  +++|++|++|+.||+|++||+.+++.+..+ .+|...|.+++|+    +.+|++|+.||
T Consensus       107 ~~~~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~----~~~l~s~~~dg  179 (445)
T 2ovr_B          107 ELKSPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMR----DNIIISGSTDR  179 (445)
T ss_dssp             CCCCCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEE----TTEEEEEETTS
T ss_pred             CcceeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEec----CCEEEEEeCCC
Confidence            345678899999875 554  456899999999999999999999999988 7999999999998    35999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  197 (763)
                      +|++||+.++          +++..+.+|...|.+++|++   ..+++++.||.|++||+++++..              
T Consensus       180 ~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~--------------  232 (445)
T 2ovr_B          180 TLKVWNAETG----------ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL--------------  232 (445)
T ss_dssp             CEEEEETTTT----------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE--------------
T ss_pred             eEEEEECCcC----------cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEE--------------
Confidence            9999999863          44778889999999999964   57999999999999999876521              


Q ss_pred             EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004290          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (763)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (763)
                                 ....+|...|.+++|+   +++|++|+.|+.|++||+++++.+..+                    .+|
T Consensus       233 -----------~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------~~~  278 (445)
T 2ovr_B          233 -----------HVLMGHVAAVRCVQYD---GRRVVSGAYDFMVKVWDPETETCLHTL--------------------QGH  278 (445)
T ss_dssp             -----------EEEECCSSCEEEEEEC---SSCEEEEETTSCEEEEEGGGTEEEEEE--------------------CCC
T ss_pred             -----------EEEcCCcccEEEEEEC---CCEEEEEcCCCEEEEEECCCCcEeEEe--------------------cCC
Confidence                       1112467789999993   578999999999999999876543322                    234


Q ss_pred             CccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCcc
Q 004290          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  314 (763)
Q Consensus       278 ~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~  314 (763)
                      .. .|++++|  ++.+|++++.|+.|++||+.++...
T Consensus       279 ~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~  312 (445)
T 2ovr_B          279 TN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI  312 (445)
T ss_dssp             SS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEE
Confidence            44 5999999  8899999999999999999986543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4e-34  Score=339.30  Aligned_cols=213  Identities=14%  Similarity=0.245  Sum_probs=182.6

Q ss_pred             cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      ++..+.|++|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+ .+|..+|.+++|+|+  +.+|++++.||.|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~~~~~dg~i   79 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFRI   79 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSEE
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeCC--CCEEEEEeCCCeE
Confidence            5677889999999999999999999999999999999999999999998 789999999999999  7999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      ++||+.++          ..+..+.+|.+.|.+++|+| ++.+|++++.||.|++||+.++...                
T Consensus        80 ~vw~~~~~----------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~----------------  132 (814)
T 3mkq_A           80 RVFNYNTG----------EKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWAL----------------  132 (814)
T ss_dssp             EEEETTTC----------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEE----------------
T ss_pred             EEEECCCC----------cEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceE----------------
Confidence            99999863          34677889999999999999 6688999999999999999875311                


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                              ......|...|.+++|+|.++++|++++.|+.|++||++++.....+                    ..+..
T Consensus       133 --------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------------------~~~~~  184 (814)
T 3mkq_A          133 --------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL--------------------TTGQE  184 (814)
T ss_dssp             --------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE--------------------ECCCT
T ss_pred             --------EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE--------------------ecCCC
Confidence                    11122466789999999944789999999999999999876543222                    11222


Q ss_pred             cceeEEEEcC--CCCEEEEEeCCCeEEEEECCC
Q 004290          280 LHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       280 ~~i~~v~~sp--dg~~l~~~s~d~~i~iwd~~~  310 (763)
                      ..++.++|+|  ++.+|++++.|+.|++||+.+
T Consensus       185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  217 (814)
T 3mkq_A          185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (814)
T ss_dssp             TCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            2599999999  999999999999999999876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.9e-34  Score=308.85  Aligned_cols=203  Identities=19%  Similarity=0.282  Sum_probs=163.0

Q ss_pred             eccccCc--eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004290           46 LEGHQGC--VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (763)
Q Consensus        46 l~gH~~~--V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd  123 (763)
                      ..+|...  +.+++|++  ..+++++.|+.|++||+.+++....+...|...|.+++|+|+  +.+|++|+.||.|++||
T Consensus        87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd  162 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHD--GSFLSVGLGNGLVDIYD  162 (401)
T ss_dssp             CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT--SSEEEEEETTSCEEEEE
T ss_pred             CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC--CCEEEEECCCCeEEEEE
Confidence            3477655  45566664  558888899999999999999888875568999999999998  79999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                      +.++          ..+..+.+|...|.+++|++   .+|++++.||.|++||++.....                    
T Consensus       163 ~~~~----------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~--------------------  209 (401)
T 4aez_A          163 VESQ----------TKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQ--------------------  209 (401)
T ss_dssp             TTTC----------CEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE--------------------
T ss_pred             CcCC----------eEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcce--------------------
Confidence            9863          34777889999999999954   69999999999999999854311                    


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  283 (763)
                          +.....|...|.+++|+|+ +.+|++|+.|+.|++||+++++.+..+                    .+|.. .|+
T Consensus       210 ----~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~--------------------~~~~~-~v~  263 (401)
T 4aez_A          210 ----IGTLQGHSSEVCGLAWRSD-GLQLASGGNDNVVQIWDARSSIPKFTK--------------------TNHNA-AVK  263 (401)
T ss_dssp             ----EEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTCSSEEEEE--------------------CCCSS-CCC
T ss_pred             ----eeEEcCCCCCeeEEEEcCC-CCEEEEEeCCCeEEEccCCCCCccEEe--------------------cCCcc-eEE
Confidence                1112346788999999996 789999999999999999986543222                    22444 599


Q ss_pred             EEEEcCCCCEEEE-Ee--CCCeEEEEECCCC
Q 004290          284 HVTFSPNGEEVLL-SY--SGEHVYLMDVNHA  311 (763)
Q Consensus       284 ~v~~spdg~~l~~-~s--~d~~i~iwd~~~~  311 (763)
                      +++|+|++..+++ ++  .|+.|++||+.++
T Consensus       264 ~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~  294 (401)
T 4aez_A          264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATG  294 (401)
T ss_dssp             EEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred             EEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence            9999998765555 43  5999999999874

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=310.96  Aligned_cols=233  Identities=15%  Similarity=0.279  Sum_probs=167.0

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-----------EEEEEccCCC------------CceEEEEEeeC
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----------LLHSIETGHS------------ANVFCTKFVPE  104 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-----------~~~~~~~~h~------------~~V~~v~~~p~  104 (763)
                      .|.+.|++++|+|+|++||+|+.||.|+|||+.+++           ....+ .+|.            ..|.+++|+|+
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcCC
Confidence            368899999999999999999999999999999876           46667 7898            88999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCCCCC-----------------CCCCCC------------CCcee-eecccCceeEEE
Q 004290          105 TSDELVVSGAGDAEVRLFNLSRFSGRG-----------------LDDNAI------------TPSAL-YQCHTRRVKKLA  154 (763)
Q Consensus       105 ~~~~~l~s~s~dg~I~iwd~~~~~~~~-----------------~~~~~~------------~~~~~-~~~h~~~v~~l~  154 (763)
                      .+..+|++++.|+.|++||+.......                 ......            .+... ..+|...|.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            322799999999999999997522100                 000000            00112 367999999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEE
Q 004290          155 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG  234 (763)
Q Consensus       155 ~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sg  234 (763)
                      |+| ++.+|+++ .|+.|++||++.....           ..++....      .....|...|++++|+|+++++|++|
T Consensus       185 ~~~-~~~~l~s~-~d~~i~iwd~~~~~~~-----------~~~~~~~~------~~~~~~~~~v~~~~~~p~~~~~l~s~  245 (447)
T 3dw8_B          185 INS-DYETYLSA-DDLRINLWHLEITDRS-----------FNIVDIKP------ANMEELTEVITAAEFHPNSCNTFVYS  245 (447)
T ss_dssp             ECT-TSSEEEEE-CSSEEEEEETTEEEEE-----------EEEEECCC------SSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred             EcC-CCCEEEEe-CCCeEEEEECCCCCce-----------eeeeeccc------ccccccCcceEEEEECCCCCcEEEEE
Confidence            999 67899898 7999999999853211           11111110      12335678899999999854899999


Q ss_pred             eCCCcEEEEeCCCCCCC----cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          235 GSDAFARLYDRRMLPPL----TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       235 s~Dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      +.|+.|++||+++++..    ..+.....+ .....+       .+|.. .|++++|+|+|++|++++. +.|++||+.+
T Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~-~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          246 SSKGTIRLCDMRASALCDRHSKLFEEPEDP-SNRSFF-------SEIIS-SISDVKFSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             ETTSCEEEEETTTCSSSCTTCEEECCC------CCHH-------HHHTT-CEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred             eCCCeEEEEECcCCccccceeeEeccCCCc-cccccc-------cccCc-eEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence            99999999999987642    221110000 000000       00111 5999999999999999999 9999999987

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.3e-33  Score=298.19  Aligned_cols=205  Identities=16%  Similarity=0.155  Sum_probs=168.0

Q ss_pred             ceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEccCCCCceEEEEEeeCCCCc-EEEEEeCCCc
Q 004290           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAE  118 (763)
Q Consensus        43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~---~~~~~~~~h~~~V~~v~~~p~~~~~-~l~s~s~dg~  118 (763)
                      +....+|.+.|++++|+|++++|++|+.|+.|+|||+.++.   ....+ .+|...|.+++|+|+  +. +|++|+.||.
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~~l~~~~~dg~   80 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDN--TDLQIYVGTVQGE   80 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEES--SSEEEEEEETTSC
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCC--CCcEEEEEcCCCe
Confidence            34456899999999999999999999999999999998876   33444 489999999999999  79 9999999999


Q ss_pred             EEEEEC-CCCCCCCCCCCCCCCceeeec--ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC---------CCCCCCC
Q 004290          119 VRLFNL-SRFSGRGLDDNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ---------GSSCPPA  186 (763)
Q Consensus       119 I~iwd~-~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~  186 (763)
                      |++||+ ....           ...+.+  |...|.+++|+|  +.+|++++.|+.|++||+++         .+..   
T Consensus        81 i~~wd~~~~~~-----------~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---  144 (342)
T 1yfq_A           81 ILKVDLIGSPS-----------FQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS---  144 (342)
T ss_dssp             EEEECSSSSSS-----------EEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS---
T ss_pred             EEEEEeccCCc-----------eEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCee---
Confidence            999999 7532           466778  999999999999  58999999999999999986         3311   


Q ss_pred             CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC-CCCCcccCCCCCCCCccc
Q 004290          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVN  265 (763)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~  265 (763)
                                            .... +...|.+++|+|+   .+++++.|+.|++||+++ +......           
T Consensus       145 ----------------------~~~~-~~~~v~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~-----------  187 (342)
T 1yfq_A          145 ----------------------NNTK-VKNKIFTMDTNSS---RLIVGMNNSQVQWFRLPLCEDDNGTI-----------  187 (342)
T ss_dssp             ----------------------SSSS-SCCCEEEEEECSS---EEEEEESTTEEEEEESSCCTTCCCEE-----------
T ss_pred             ----------------------eEEe-eCCceEEEEecCC---cEEEEeCCCeEEEEECCcccccccee-----------
Confidence                                  1111 5678999999986   299999999999999987 4321100           


Q ss_pred             ccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 004290          266 YFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       266 ~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s~d~~i~iwd~~~~  311 (763)
                             ....+.. .|++++|+| ++++|++++.|+.|++|++...
T Consensus       188 -------~~~~~~~-~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          188 -------EESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             -------EECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             -------eecCCCC-ceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence                   0012333 599999999 9999999999999999999874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.1e-34  Score=303.05  Aligned_cols=151  Identities=13%  Similarity=0.163  Sum_probs=118.3

Q ss_pred             eeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004290           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (763)
Q Consensus        45 ~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw  122 (763)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.  .+..+ .+|...|.+++|+|..++.+|++|+.|++|++|
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            467999999999999999999999999999999998875  45566 799999999999863226899999999999999


Q ss_pred             ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC-CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004290          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (763)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  201 (763)
                      |++++..        .....+.+|...|.+++|+|++ +.+|++++.|++|++||++.....                  
T Consensus        87 d~~~~~~--------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~------------------  140 (316)
T 3bg1_A           87 REENGTW--------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW------------------  140 (316)
T ss_dssp             CCSSSCC--------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE------------------
T ss_pred             ECCCCcc--------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc------------------
Confidence            9986321        2356778899999999999953 679999999999999999865310                  


Q ss_pred             CCceeeccCCCCCccceEEEEEeCC
Q 004290          202 CGAKRSLADPPKQTLSLKSCDISST  226 (763)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~~p~  226 (763)
                          ........|...|.+++|+|+
T Consensus       141 ----~~~~~~~~h~~~v~~~~~~~~  161 (316)
T 3bg1_A          141 ----EVKKINNAHTIGCNAVSWAPA  161 (316)
T ss_dssp             ----EECCBTTSSSSCBCCCEECCC
T ss_pred             ----ceeeeeccccCCcceEEEccc
Confidence                011223456778888999986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.5e-33  Score=308.50  Aligned_cols=198  Identities=14%  Similarity=0.295  Sum_probs=164.7

Q ss_pred             eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004290           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (763)
Q Consensus        46 l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~  125 (763)
                      ..+|...|.+++|  ++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|  +  +.+|++|+.||.|++||+.
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~--~--~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY--D--ERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC--C--SSEEEEEETTSCEEEEESS
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE--C--CCEEEEEcCCCeEEEEECC
Confidence            3467778999887  7999999999999999999999999988 799999999999  4  6899999999999999998


Q ss_pred             CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004290          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (763)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (763)
                      ++          +.+..+.+|...|.+++|++   .++++++.||.|++||++++...                      
T Consensus       202 ~~----------~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~----------------------  246 (435)
T 1p22_A          202 TG----------EMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDI----------------------  246 (435)
T ss_dssp             SC----------CEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCC----------------------
T ss_pred             CC----------cEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCc----------------------
Confidence            73          34778889999999999974   58999999999999999886532                      


Q ss_pred             eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEE
Q 004290          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (763)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v  285 (763)
                      .......+|...|.+++|+   +++|++|+.|+.|++||+++++.+..+                    .+|.. .|.++
T Consensus       247 ~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~--------------------~~~~~-~v~~~  302 (435)
T 1p22_A          247 TLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTL--------------------NGHKR-GIACL  302 (435)
T ss_dssp             EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEE--------------------ECCSS-CEEEE
T ss_pred             eeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEE--------------------cCCCC-cEEEE
Confidence            0011223567789999993   569999999999999999987644332                    23444 59999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          286 TFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       286 ~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +|  ++.+|++++.|+.|++||+.++
T Consensus       303 ~~--~~~~l~~g~~dg~i~iwd~~~~  326 (435)
T 1p22_A          303 QY--RDRLVVSGSSDNTIRLWDIECG  326 (435)
T ss_dssp             EE--ETTEEEEEETTSCEEEEETTTC
T ss_pred             Ee--CCCEEEEEeCCCeEEEEECCCC
Confidence            98  4689999999999999999874

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.3e-33  Score=297.77  Aligned_cols=174  Identities=15%  Similarity=0.212  Sum_probs=139.9

Q ss_pred             eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE
Q 004290           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (763)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  162 (763)
                      +....+ .+|...|++++|+|+  +.+|++|+.|++|++||..+.          .....+..|...|.+++|+| ++.+
T Consensus        55 ~~~~~l-~gH~~~V~~~~~s~d--~~~l~s~s~Dg~v~vWd~~~~----------~~~~~~~~~~~~v~~~~~sp-~g~~  120 (354)
T 2pbi_B           55 KTRRTL-KGHGNKVLCMDWCKD--KRRIVSSSQDGKVIVWDSFTT----------NKEHAVTMPCTWVMACAYAP-SGCA  120 (354)
T ss_dssp             CEEEEE-ECCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTC----------CEEEEEECSSSCCCEEEECT-TSSE
T ss_pred             EEEEEe-cCCCCeEEEEEECCC--CCEEEEEeCCCeEEEEECCCC----------CcceEEecCCCCEEEEEECC-CCCE
Confidence            445666 799999999999999  799999999999999998763          33566778899999999999 6789


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEE
Q 004290          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (763)
Q Consensus       163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~i  242 (763)
                      +++++.|+.+++|++........     ..              .......|...|.+++|+|+ +..|++++.|++|++
T Consensus       121 lasg~~d~~i~v~~~~~~~~~~~-----~~--------------~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~D~~v~l  180 (354)
T 2pbi_B          121 IACGGLDNKCSVYPLTFDKNENM-----AA--------------KKKSVAMHTNYLSACSFTNS-DMQILTASGDGTCAL  180 (354)
T ss_dssp             EEEESTTSEEEEEECCCCTTCCS-----GG--------------GCEEEEECSSCEEEEEECSS-SSEEEEEETTSEEEE
T ss_pred             EEEeeCCCCEEEEEEeccccccc-----cc--------------cceeeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEE
Confidence            99999999999999876532100     00              01111246788999999997 689999999999999


Q ss_pred             EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC--CCCEEEEEeCCCeEEEEECCCC
Q 004290          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp--dg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ||+++++.+..+                    .+|.. .|++++|+|  +|.+|++++.|+.|++||++++
T Consensus       181 wd~~~~~~~~~~--------------------~~h~~-~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~  230 (354)
T 2pbi_B          181 WDVESGQLLQSF--------------------HGHGA-DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG  230 (354)
T ss_dssp             EETTTCCEEEEE--------------------ECCSS-CEEEEEECCCSSCCEEEEEETTSCEEEEETTTC
T ss_pred             EeCCCCeEEEEE--------------------cCCCC-CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            999987644332                    34554 599999988  5789999999999999998874

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1e-33  Score=296.02  Aligned_cols=227  Identities=15%  Similarity=0.231  Sum_probs=189.6

Q ss_pred             CCCcccccccccchhhhhc---cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceE
Q 004290           21 DTRPDVNHSLQMHSSLVRR---LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF   97 (763)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~---~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~   97 (763)
                      -.+.+.++.+++|+.....   ..+++.|++|...|++++|+|+|++|++|+.|++|+|||+.+++.+..+ .+|...|.
T Consensus        33 l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~  111 (319)
T 3frx_A           33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF-VGHKSDVM  111 (319)
T ss_dssp             EEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEE
T ss_pred             EEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEE
Confidence            3456678999999843222   3457789999999999999999999999999999999999999999988 79999999


Q ss_pred             EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC-----CCCEEEEEeCCCcE
Q 004290           98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-----NPHVVWSASEDGTL  172 (763)
Q Consensus        98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-----~~~~l~s~s~dg~i  172 (763)
                      +++|+|+  +.+|++|+.|++|++||++.           .++..+.+|...|.+++|.|.     ++.++++++.|+.|
T Consensus       112 ~~~~~~~--~~~l~s~s~D~~i~vwd~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i  178 (319)
T 3frx_A          112 SVDIDKK--ASMIISGSRDKTIKVWTIKG-----------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV  178 (319)
T ss_dssp             EEEECTT--SCEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCE
T ss_pred             EEEEcCC--CCEEEEEeCCCeEEEEECCC-----------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEE
Confidence            9999999  79999999999999999974           347788899999999999984     23489999999999


Q ss_pred             EEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCc
Q 004290          173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT  252 (763)
Q Consensus       173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~  252 (763)
                      ++||+++.+.                         .....+|...|++++|+|+ +.+|++|+.|+.|++||+++++.+.
T Consensus       179 ~~wd~~~~~~-------------------------~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~i~iwd~~~~~~~~  232 (319)
T 3frx_A          179 KAWNLNQFQI-------------------------EADFIGHNSNINTLTASPD-GTLIASAGKDGEIMLWNLAAKKAMY  232 (319)
T ss_dssp             EEEETTTTEE-------------------------EEEECCCCSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEEEE
T ss_pred             EEEECCcchh-------------------------heeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEE
Confidence            9999987641                         1122357789999999997 7899999999999999999865433


Q ss_pred             ccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      .+                    ..+.  .|.+++|+|++.+|++++. +.+++|++..
T Consensus       233 ~~--------------------~~~~--~v~~~~~sp~~~~la~~~~-~~i~v~~~~~  267 (319)
T 3frx_A          233 TL--------------------SAQD--EVFSLAFSPNRYWLAAATA-TGIKVFSLDP  267 (319)
T ss_dssp             EE--------------------ECCS--CEEEEEECSSSSEEEEEET-TEEEEEEETT
T ss_pred             Ee--------------------cCCC--cEEEEEEcCCCCEEEEEcC-CCcEEEEeCc
Confidence            22                    1121  5999999999998887765 4599999876

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-33  Score=298.25  Aligned_cols=236  Identities=13%  Similarity=0.135  Sum_probs=180.6

Q ss_pred             ceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004290           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (763)
Q Consensus        43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~  118 (763)
                      ...+++|.+.|++++|+|++++||+|+.||.|+|||+.++    +.+..+ .+|...|.+++|+|..++.+|++++.|+.
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            4567899999999999999999999999999999999876    456666 78999999999999311689999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC-CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  197 (763)
                      |++||+..+..... .....++..+..|...|.+++|+|+. +.+|++++.||.|++||+++++.......     ....
T Consensus        83 v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~  156 (351)
T 3f3f_A           83 VKLWEEDPDQEECS-GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL-----TSEM  156 (351)
T ss_dssp             EEEEEECTTSCTTS-SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE-----EEEE
T ss_pred             EEEEecCCCccccc-ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc-----cccc
Confidence            99999987432110 11123467778899999999999942 78999999999999999998774421100     0000


Q ss_pred             EecCCCceeeccCCCCCccceEEEEEeCC--CCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290          198 LDLRCGAKRSLADPPKQTLSLKSCDISST--RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (763)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~--~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (763)
                             .........+...+.+++|+|+  .+.+|++++.|+.+.+|+...+...           .+..+       .
T Consensus       157 -------~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~-------~  211 (351)
T 3f3f_A          157 -------KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH-----------VAAKL-------P  211 (351)
T ss_dssp             -------ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE-----------EEEEC-------C
T ss_pred             -------cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee-----------eeeec-------C
Confidence                   0011122356778999999996  4689999999999988887765321           01111       3


Q ss_pred             CCCccceeEEEEcCCC----CEEEEEeCCCeEEEEECCCC
Q 004290          276 GRSSLHLTHVTFSPNG----EEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       276 g~~~~~i~~v~~spdg----~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +|.. .|++++|+|++    ++|++++.|+.|++||+..+
T Consensus       212 ~h~~-~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          212 GHKS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             CCCS-CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             CCCc-ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence            3544 69999999998    89999999999999999874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=298.52  Aligned_cols=247  Identities=15%  Similarity=0.199  Sum_probs=190.0

Q ss_pred             Ccccccccccchhhhhccccce-eeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEccCCCCceEEE
Q 004290           23 RPDVNHSLQMHSSLVRRLSQER-ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCT   99 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~-~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~--~~~~~~~~~h~~~V~~v   99 (763)
                      +...++.|++|+....+..... ...+|.+.|++++|+|+|++||+|+.|++|+|||+.++  +++..+ .+|...|.++
T Consensus        33 s~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v  111 (345)
T 3fm0_A           33 SCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSV  111 (345)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE-CCCSSCEEEE
T ss_pred             EEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc-cCCCCCceEE
Confidence            4567899999985444333233 34789999999999999999999999999999999876  356667 7999999999


Q ss_pred             EEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (763)
Q Consensus       100 ~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~  179 (763)
                      +|+|+  +++|++|+.|++|++||+.....       ..++..+.+|...|.+++|+| ++.+|++++.|++|++||++.
T Consensus       112 ~~sp~--~~~l~s~s~D~~v~iwd~~~~~~-------~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~  181 (345)
T 3fm0_A          112 AWAPS--GNLLATCSRDKSVWVWEVDEEDE-------YECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEE  181 (345)
T ss_dssp             EECTT--SSEEEEEETTSCEEEEEECTTSC-------EEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEET
T ss_pred             EEeCC--CCEEEEEECCCeEEEEECCCCCC-------eEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecC
Confidence            99999  79999999999999999986321       133567789999999999999 668999999999999999876


Q ss_pred             CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004290          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (763)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~  259 (763)
                      .+.                       .......+|...|++++|+|+ +++|++|+.|++|+|||.........+.....
T Consensus       182 ~~~-----------------------~~~~~~~~h~~~v~~l~~sp~-g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~  237 (345)
T 3fm0_A          182 DDW-----------------------VCCATLEGHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGS  237 (345)
T ss_dssp             TEE-----------------------EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred             CCE-----------------------EEEEEecCCCCceEEEEECCC-CCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence            531                       111223467889999999997 78999999999999999754332111100000


Q ss_pred             --CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          260 --PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       260 --~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                        ...|+..+       .+.....|.+++|+|++..|++++.|+.|++|+....
T Consensus       238 ~~~~~~~~~~-------~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          238 DPSWKCICTL-------SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             -CEEEEEEEE-------CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred             CCccceeEEe-------cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence              00111111       2222236999999999999999999999999998763

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1e-33  Score=300.79  Aligned_cols=213  Identities=17%  Similarity=0.203  Sum_probs=168.9

Q ss_pred             cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE---ccCCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004290           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (763)
Q Consensus        42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~---~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~  118 (763)
                      ......+|...|++++|+|++.+ ++++.||+|+|||+.+++.+...   ..+|...|++++|+|+  +++|++|+.|+.
T Consensus        86 ~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~~l~sgs~dg~  162 (357)
T 4g56_B           86 LCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD--GTQAVSGGKDFS  162 (357)
T ss_dssp             GCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS--SSEEEEEETTSC
T ss_pred             EecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC--CCEEEEEeCCCe
Confidence            34455679999999999999865 56788999999999987654321   1489999999999999  799999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  198 (763)
                      |++||++++          .++..+.+|...|++++|+|++..++++++.||+|++||+++++...              
T Consensus       163 v~iwd~~~~----------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~--------------  218 (357)
T 4g56_B          163 VKVWDLSQK----------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT--------------  218 (357)
T ss_dssp             EEEEETTTT----------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC--------------
T ss_pred             EEEEECCCC----------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee--------------
Confidence            999999873          44778889999999999999777789999999999999999876431              


Q ss_pred             ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (763)
                               ......+...+.+++|+|+++.+|++|+.|+.|++||+++++.+..+                    .+|.
T Consensus       219 ---------~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~--------------------~~~~  269 (357)
T 4g56_B          219 ---------RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS--------------------AVHS  269 (357)
T ss_dssp             ---------BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE--------------------CCCS
T ss_pred             ---------eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE--------------------eccc
Confidence                     11122355678999999987889999999999999999987544322                    3354


Q ss_pred             ccceeEEEEcCCC-CEEEEEeCCCeEEEEECCCC
Q 004290          279 SLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       279 ~~~i~~v~~spdg-~~l~~~s~d~~i~iwd~~~~  311 (763)
                      . .|++++|+|++ ++|++++.|++|+|||++++
T Consensus       270 ~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          270 Q-NITGLAYSYHSSPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             S-CEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred             e-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence            4 59999999987 57889999999999998763

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.9e-35  Score=317.57  Aligned_cols=220  Identities=14%  Similarity=0.131  Sum_probs=165.8

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~  130 (763)
                      ..+++++|+|+|++|++|+.|+.|++||+.+++....+ ..| ..+....|+|+  +++|++|+.|+.|++||+...   
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~---  129 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-KRA-DYTAVDTAKLQ--MRRFILGTTEGDIKVLDSNFN---  129 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS-CSC-CEEEEEEECSS--SCEEEEEETTSCEEEECTTSC---
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE-ecC-CceEEEEEecC--CCEEEEEECCCCEEEEeCCCc---
Confidence            34558999999999999999999999999887765544 344 44455577888  799999999999999999863   


Q ss_pred             CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccC
Q 004290          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (763)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (763)
                             .....+.+|.+.|++++|+| ++.+|++++.|+.|++||+++++..                         ..
T Consensus       130 -------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~-------------------------~~  176 (420)
T 3vl1_A          130 -------LQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNP-------------------------RT  176 (420)
T ss_dssp             -------EEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCC-------------------------EE
T ss_pred             -------ceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCc-------------------------eE
Confidence                   33566678999999999999 6689999999999999999887532                         11


Q ss_pred             CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccc--ccc-ccCCCCCccceeEEEE
Q 004290          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC--PMH-LSEHGRSSLHLTHVTF  287 (763)
Q Consensus       211 ~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~g~~~~~i~~v~~  287 (763)
                      ..+|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.........+....  +.. ..........+++++|
T Consensus       177 ~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~  255 (420)
T 3vl1_A          177 LIGHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF  255 (420)
T ss_dssp             EECCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred             EcCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence            1257788999999997 78999999999999999998876555432211111111000  000 0000001125778888


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCC
Q 004290          288 SPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       288 spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +|++++|++++.|+.|++||+.++
T Consensus       256 s~~~~~l~~~~~dg~i~i~d~~~~  279 (420)
T 3vl1_A          256 GTYGKYVIAGHVSGVITVHNVFSK  279 (420)
T ss_dssp             SCTTEEEEEEETTSCEEEEETTTC
T ss_pred             cCCCCEEEEEcCCCeEEEEECCCC
Confidence            999999999999999999999874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.7e-33  Score=298.61  Aligned_cols=212  Identities=16%  Similarity=0.187  Sum_probs=165.6

Q ss_pred             hhccccceeeccccCceEEEEeCCC---CCEEEEEeCCCcEEEEeCCC-CeEE-EEEccCCCCceEEEEEeeCCCCcEEE
Q 004290           37 VRRLSQERELEGHQGCVNAISWNSK---GSLLISGSDDTHINVWSYSS-RKLL-HSIETGHSANVFCTKFVPETSDELVV  111 (763)
Q Consensus        37 ~~~~~~~~~l~gH~~~V~~l~fsp~---g~~Lasgs~D~~v~iWd~~~-~~~~-~~~~~~h~~~V~~v~~~p~~~~~~l~  111 (763)
                      ....+.+..+++|.+.|++++|+|+   |++|++|+.|+.|+|||+.+ +..+ ..+ .+|...|.+++|+|+  +++|+
T Consensus        26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~  102 (368)
T 3mmy_A           26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-QMHTGPVLDVCWSDD--GSKVF  102 (368)
T ss_dssp             SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE-EECSSCEEEEEECTT--SSEEE
T ss_pred             CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe-ccccCCEEEEEECcC--CCEEE
Confidence            4556778889999999999999999   69999999999999999997 6555 445 789999999999998  79999


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEE--ecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004290          112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV--EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (763)
Q Consensus       112 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  189 (763)
                      +++.||.|++||+....           ...+..|...|.+++|  +| ++.+|++++.||.|++||+++++..      
T Consensus       103 s~~~dg~v~iwd~~~~~-----------~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~------  164 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQ-----------AIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPM------  164 (368)
T ss_dssp             EEETTSEEEEEETTTTE-----------EEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCS------
T ss_pred             EEcCCCcEEEEEcCCCC-----------ceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEE------
Confidence            99999999999998632           3346679999999999  77 6688999999999999999987633      


Q ss_pred             CcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccc
Q 004290          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (763)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  269 (763)
                           ..+ .              ....+.++.+.+   ..+++++.++.+++||++........            .  
T Consensus       165 -----~~~-~--------------~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~------------~--  207 (368)
T 3mmy_A          165 -----MVL-Q--------------LPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRR------------I--  207 (368)
T ss_dssp             -----EEE-E--------------CSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEE------------C--
T ss_pred             -----EEE-e--------------cCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhh------------c--
Confidence                 111 0              112456666665   38889999999999999865321110            0  


Q ss_pred             ccccCCCCCccceeEEEEcCCCCE----EEEEeCCCeEEEEECCCC
Q 004290          270 MHLSEHGRSSLHLTHVTFSPNGEE----VLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       270 ~~~~~~g~~~~~i~~v~~spdg~~----l~~~s~d~~i~iwd~~~~  311 (763)
                           .......+..+++.++...    +++++.|+.|++|++...
T Consensus       208 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  248 (368)
T 3mmy_A          208 -----ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP  248 (368)
T ss_dssp             -----CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred             -----cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence                 0011113666666665554    999999999999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.2e-32  Score=302.14  Aligned_cols=232  Identities=19%  Similarity=0.228  Sum_probs=188.6

Q ss_pred             cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p  103 (763)
                      ...++.|++|+  +.+.+++..+.+|.+.|++++|+|++ +|++|+.|++|++||+.+++.+..+ .+|...|.+++|++
T Consensus       138 gs~dg~i~vwd--~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~  213 (464)
T 3v7d_B          138 GADDKMIRVYD--SINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVE  213 (464)
T ss_dssp             EETTSCEEEEE--TTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEEE
T ss_pred             EcCCCcEEEEE--CCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEE-CCCCCccEEEEEec
Confidence            45678999998  56778899999999999999999988 9999999999999999999999988 79999999999997


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC-------------CCCCceeeecccCceeEEEEecCCCCEEEEEeCCC
Q 004290          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN-------------AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  170 (763)
Q Consensus       104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-------------~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg  170 (763)
                      ..++.+|++|+.|+.|++||+...........             ....+..+.+|...|.++.  + ++.++++++.||
T Consensus       214 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~  290 (464)
T 3v7d_B          214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDN  290 (464)
T ss_dssp             SSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTS
T ss_pred             CCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCC
Confidence            54378999999999999999986432110000             0012456778999998885  4 457999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 004290          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (763)
Q Consensus       171 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~  250 (763)
                      .|++||+++++.                         +....+|...|.+++|+|+ +.+|++|+.|+.|++||+++++.
T Consensus       291 ~i~vwd~~~~~~-------------------------~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~  344 (464)
T 3v7d_B          291 TLIVWDVAQMKC-------------------------LYILSGHTDRIYSTIYDHE-RKRCISASMDTTIRIWDLENGEL  344 (464)
T ss_dssp             CEEEEETTTTEE-------------------------EEEECCCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEE
T ss_pred             eEEEEECCCCcE-------------------------EEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcE
Confidence            999999987652                         1222356788999999997 68999999999999999998754


Q ss_pred             CcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +..+                    .+|.. .|++++|+  +.+|++++.|+.|++||+.++
T Consensus       345 ~~~~--------------------~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~  382 (464)
T 3v7d_B          345 MYTL--------------------QGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDY  382 (464)
T ss_dssp             EEEE--------------------CCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred             EEEE--------------------eCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCC
Confidence            4332                    34554 59999997  579999999999999999874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3e-33  Score=301.63  Aligned_cols=159  Identities=18%  Similarity=0.234  Sum_probs=127.6

Q ss_pred             CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeec------------------ccCceeE
Q 004290           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC------------------HTRRVKK  152 (763)
Q Consensus        91 ~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~------------------h~~~v~~  152 (763)
                      +|...|.+++|+|+  +++|++|+ ++.+++|++..+..          +..+..                  +...|.+
T Consensus        62 ~h~~~V~~v~fspd--g~~la~g~-~~~v~i~~~~~g~~----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~  128 (393)
T 1erj_A           62 DHTSVVCCVKFSND--GEYLATGC-NKTTQVYRVSDGSL----------VARLSDDSAANKDPENLNTSSSPSSDLYIRS  128 (393)
T ss_dssp             ECSSCCCEEEECTT--SSEEEEEC-BSCEEEEETTTCCE----------EEEECC-----------------CCCCBEEE
T ss_pred             CCCCEEEEEEECCC--CCEEEEEc-CCcEEEEEecCCCE----------EEEecCccccccccccccccccCCCceeEEE
Confidence            69999999999999  79999976 78999999986431          222322                  2335999


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEE
Q 004290          153 LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL  232 (763)
Q Consensus       153 l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~  232 (763)
                      ++|+| ++.+|++|+.|+.|++||+.+++.                         +....+|...|.+++|+|+ +.+|+
T Consensus       129 v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~-------------------------~~~~~~h~~~v~~~~~~p~-~~~l~  181 (393)
T 1erj_A          129 VCFSP-DGKFLATGAEDRLIRIWDIENRKI-------------------------VMILQGHEQDIYSLDYFPS-GDKLV  181 (393)
T ss_dssp             EEECT-TSSEEEEEETTSCEEEEETTTTEE-------------------------EEEECCCSSCEEEEEECTT-SSEEE
T ss_pred             EEECC-CCCEEEEEcCCCeEEEEECCCCcE-------------------------EEEEccCCCCEEEEEEcCC-CCEEE
Confidence            99999 668999999999999999987642                         1122457788999999997 68999


Q ss_pred             EEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 004290          233 VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       233 sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +++.|+.|++||+++++....+                    . +.. .+++++|+| ++++|++++.|+.|++||+.++
T Consensus       182 s~s~d~~v~iwd~~~~~~~~~~--------------------~-~~~-~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~  239 (393)
T 1erj_A          182 SGSGDRTVRIWDLRTGQCSLTL--------------------S-IED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG  239 (393)
T ss_dssp             EEETTSEEEEEETTTTEEEEEE--------------------E-CSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTC
T ss_pred             EecCCCcEEEEECCCCeeEEEE--------------------E-cCC-CcEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence            9999999999999986532211                    0 112 499999999 8999999999999999999874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.4e-33  Score=331.31  Aligned_cols=250  Identities=16%  Similarity=0.197  Sum_probs=210.3

Q ss_pred             ccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeC
Q 004290           25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (763)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~  104 (763)
                      ..+..+++|+  ..+.+.+..+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+ .+|...|.+++|+|+
T Consensus        32 ~~~g~v~iwd--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~  108 (814)
T 3mkq_A           32 LYSGRVEIWN--YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPT  108 (814)
T ss_dssp             ETTSEEEEEE--TTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSS
T ss_pred             eCCCEEEEEE--CCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCC
Confidence            4467899998  4567788899999999999999999999999999999999999999999988 789999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 004290          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  184 (763)
Q Consensus       105 ~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~  184 (763)
                        +.+|++++.||.|++||+....         .....+.+|...|.+++|+|.++.+|++++.||.|++||++.+... 
T Consensus       109 --~~~l~~~~~dg~i~vw~~~~~~---------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~-  176 (814)
T 3mkq_A          109 --KPYVLSGSDDLTVKLWNWENNW---------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN-  176 (814)
T ss_dssp             --SSEEEEEETTSEEEEEEGGGTS---------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS-
T ss_pred             --CCEEEEEcCCCEEEEEECCCCc---------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce-
Confidence              7999999999999999998631         3366788899999999999966789999999999999999876532 


Q ss_pred             CCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeC--CCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (763)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p--~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (763)
                                ..+.             ..+...+.+++|+|  + +.+|++++.|+.|++||+++++.+..+        
T Consensus       177 ----------~~~~-------------~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~--------  224 (814)
T 3mkq_A          177 ----------FTLT-------------TGQERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATL--------  224 (814)
T ss_dssp             ----------EEEE-------------CCCTTCCCEEEECCSTT-CCEEEEECTTSEEEEEETTTTEEEEEE--------
T ss_pred             ----------eEEe-------------cCCCCCEEEEEEEECCC-CCEEEEEeCCCEEEEEECCCCcEEEEE--------
Confidence                      1111             12336788999999  6 679999999999999999876533222        


Q ss_pred             cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCC
Q 004290          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN  334 (763)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~  334 (763)
                                  .+|.. .|++++|+|++++|++++.||.|++||+.++........+...+..++|+|+..
T Consensus       225 ------------~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  283 (814)
T 3mkq_A          225 ------------EGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR  283 (814)
T ss_dssp             ------------ECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCG
T ss_pred             ------------cCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCC
Confidence                        23444 599999999999999999999999999999776666666677888899998754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1e-32  Score=300.41  Aligned_cols=246  Identities=15%  Similarity=0.233  Sum_probs=195.3

Q ss_pred             CCchhhhhhccccCC-CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 004290            8 DGSIYDMLDTRHTDT-RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH   86 (763)
Q Consensus         8 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~   86 (763)
                      ++.+..+|.+-..+. ....++.|++|+....+......+.+|...|++|+|+|+|++||+|+.|++|+|||+.+++.+.
T Consensus       104 ~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          104 NDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             CCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            455566665542222 2346899999995544444444556788999999999999999999999999999999999999


Q ss_pred             EEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEE
Q 004290           87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA  166 (763)
Q Consensus        87 ~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~  166 (763)
                      .+ .+|...|.++.|+    +.+|++|+.|+.+++||.....         ..+..+.+|...+..+.|+| ++.+++++
T Consensus       184 ~~-~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~---------~~~~~~~~h~~~~~~~~~~~-~g~~l~s~  248 (420)
T 4gga_A          184 NM-TSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAP-DGRHLASG  248 (420)
T ss_dssp             EE-CCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEE
T ss_pred             EE-eCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccc---------eeeEEecccccceeeeeecC-CCCeeeee
Confidence            98 7999999998886    4699999999999999998632         34677889999999999999 66899999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEE--eCCCcEEEEe
Q 004290          167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG--GSDAFARLYD  244 (763)
Q Consensus       167 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sg--s~Dg~i~iwd  244 (763)
                      +.|+.|++||+..++...                     ..+.....+...|.+++|+|.++.+++++  +.|+.|++||
T Consensus       249 ~~D~~v~i~~~~~~~~~~---------------------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd  307 (420)
T 4gga_A          249 GNDNLVNVWPSAPGEGGW---------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN  307 (420)
T ss_dssp             ETTSCEEEEESSCCSSCS---------------------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEE
T ss_pred             eccccceEEeeccccccc---------------------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEe
Confidence            999999999998875321                     01122235677899999999888888775  4799999999


Q ss_pred             CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCeEEEEECCCC
Q 004290          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNHA  311 (763)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s--~d~~i~iwd~~~~  311 (763)
                      +++++.+..+                    ..+.  .+.++.|+|+++.|++++  .|+.|++||+.++
T Consensus       308 ~~t~~~~~~~--------------------~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~  354 (420)
T 4gga_A          308 VCSGACLSAV--------------------DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  354 (420)
T ss_dssp             TTTTEEEEEE--------------------ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             CCccccceee--------------------cccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence            9987544322                    1122  499999999999999876  5899999998773

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-33  Score=292.75  Aligned_cols=243  Identities=17%  Similarity=0.201  Sum_probs=182.2

Q ss_pred             CCcccccccccchhhhhccccceee-cc-ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC-------CeEEEEEccCC
Q 004290           22 TRPDVNHSLQMHSSLVRRLSQEREL-EG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIETGH   92 (763)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l-~g-H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~-------~~~~~~~~~~h   92 (763)
                      .+...++.+++|+......+.+..+ .+ |.+.|++++|+|++++||+|+.|++|+|||+..       .+.+..+ .+|
T Consensus        28 as~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~h  106 (330)
T 2hes_X           28 ATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII-EGH  106 (330)
T ss_dssp             EEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE-C--
T ss_pred             EEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE-cCC
Confidence            3456788999998544445566666 45 999999999999999999999999999999853       3456666 799


Q ss_pred             CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcE
Q 004290           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL  172 (763)
Q Consensus        93 ~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i  172 (763)
                      ...|.+++|+|+  +++|++|+.|++|++||+......      .+++..+.+|...|.+++|+| ++.+|++++.|++|
T Consensus       107 ~~~V~~v~~sp~--g~~las~s~D~~v~iwd~~~~~~~------~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i  177 (330)
T 2hes_X          107 ENEVKGVAWSND--GYYLATCSRDKSVWIWETDESGEE------YECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTV  177 (330)
T ss_dssp             --CEEEEEECTT--SCEEEEEETTSCEEEEECCTTCCC------CEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCE
T ss_pred             CCcEEEEEECCC--CCEEEEEeCCCEEEEEeccCCCCC------eEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeE
Confidence            999999999999  799999999999999999542111      234677889999999999999 66899999999999


Q ss_pred             EEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC-CcEEEEEeCCCcEEEEeCCCCCCC
Q 004290          173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPL  251 (763)
Q Consensus       173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~sgs~Dg~i~iwd~~~~~~~  251 (763)
                      ++||++....                       ..+....+|...|.+++|+|+. +.+|++|+.|++|++||++.....
T Consensus       178 ~iW~~~~~~~-----------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~  234 (330)
T 2hes_X          178 RIWKDYDDDW-----------------------ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED  234 (330)
T ss_dssp             EEEEEETTEE-----------------------EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT
T ss_pred             EEEECCCCCe-----------------------eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc
Confidence            9999876420                       1122334678899999999963 468999999999999999764311


Q ss_pred             cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      ....     ..+...+      ...|.. .|.+++|++++ +|++++.|+.|++|+..+
T Consensus       235 ~~~~-----~~~~~~~------~~~h~~-~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~  280 (330)
T 2hes_X          235 DQQE-----WVCEAIL------PDVHKR-QVYNVAWGFNG-LIASVGADGVLAVYEEVD  280 (330)
T ss_dssp             SCEE-----EEEEEEC------CSCCSS-CEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred             ccce-----eEEeeec------cccccc-ceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence            0000     0001111      112444 69999999776 799999999999999765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.3e-32  Score=284.87  Aligned_cols=168  Identities=20%  Similarity=0.292  Sum_probs=141.0

Q ss_pred             eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE
Q 004290           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (763)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  162 (763)
                      .....+ .+|...|++++|+|+  +++|++++.|+.|++|++..+          .....+.+|...|.+++|+| ++.+
T Consensus        14 ~~~~~~-~gh~~~v~~~~~s~~--~~~l~s~~~dg~i~iw~~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~   79 (312)
T 4ery_A           14 ALKFTL-AGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDG----------KFEKTISGHKLGISDVAWSS-DSNL   79 (312)
T ss_dssp             EEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTC----------CEEEEECCCSSCEEEEEECT-TSSE
T ss_pred             eeEEEE-cccCCcEEEEEECCC--CCEEEEeeCCCeEEEEeCCCc----------ccchhhccCCCceEEEEEcC-CCCE
Confidence            445556 799999999999999  799999999999999999863          33677889999999999999 6689


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEE
Q 004290          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (763)
Q Consensus       163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~i  242 (763)
                      |++++.|+.|++||+++++..                         ....+|...|.+++|+|+ +++|++|+.|+.|++
T Consensus        80 l~s~~~d~~i~vwd~~~~~~~-------------------------~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~i  133 (312)
T 4ery_A           80 LVSASDDKTLKIWDVSSGKCL-------------------------KTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI  133 (312)
T ss_dssp             EEEEETTSEEEEEETTTCCEE-------------------------EEEECCSSCEEEEEECSS-SSEEEEEETTSCEEE
T ss_pred             EEEECCCCEEEEEECCCCcEE-------------------------EEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcEEE
Confidence            999999999999999876521                         112246778999999997 789999999999999


Q ss_pred             EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ||+++++.+..+                    .+|.. .|++++|+|++++|++++.|+.|++||+.++
T Consensus       134 wd~~~~~~~~~~--------------------~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~  181 (312)
T 4ery_A          134 WDVKTGKCLKTL--------------------PAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG  181 (312)
T ss_dssp             EETTTCCEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EECCCCEEEEEe--------------------cCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence            999987543322                    22433 5999999999999999999999999999874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.2e-32  Score=289.13  Aligned_cols=230  Identities=17%  Similarity=0.227  Sum_probs=181.1

Q ss_pred             CCcccccccccchhhhh-----ccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCce
Q 004290           22 TRPDVNHSLQMHSSLVR-----RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV   96 (763)
Q Consensus        22 ~~~~~~~~~~~~~~~~~-----~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V   96 (763)
                      .+...++.+++|+....     ...+...+.+|...|++++|+|++.+|++|+.|++|+|||+.+++.+..+ .+|...|
T Consensus        43 ~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v  121 (343)
T 2xzm_R           43 ISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEV  121 (343)
T ss_dssp             EEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEE-ECCCSCE
T ss_pred             EEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEE-cCCCCcE
Confidence            34667889999985432     13456789999999999999999999999999999999999999999888 7999999


Q ss_pred             EEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC---------CCEEEEEe
Q 004290           97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN---------PHVVWSAS  167 (763)
Q Consensus        97 ~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~---------~~~l~s~s  167 (763)
                      .+++|+|+  +.+|++++.|++|++||+.....        .......+|...|.+++|+|..         +.+|++++
T Consensus       122 ~~v~~sp~--~~~l~s~~~d~~i~~wd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~  191 (343)
T 2xzm_R          122 YSVAFSPD--NRQILSAGAEREIKLWNILGECK--------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG  191 (343)
T ss_dssp             EEEEECSS--TTEEEEEETTSCEEEEESSSCEE--------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE
T ss_pred             EEEEECCC--CCEEEEEcCCCEEEEEeccCCce--------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEc
Confidence            99999999  79999999999999999973110        0112223789999999999954         26899999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                      .||.|++||.....                          ......|...|.+++|+|+ +++|++|+.|+.|++||++.
T Consensus       192 ~d~~i~iwd~~~~~--------------------------~~~~~~h~~~v~~~~~s~~-g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          192 WDGRLKVWNTNFQI--------------------------RYTFKAHESNVNHLSISPN-GKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             TTSEEEEEETTTEE--------------------------EEEEECCSSCEEEEEECTT-SSEEEEEETTCEEEEEESSC
T ss_pred             CCCEEEEEcCCCce--------------------------eEEEcCccccceEEEECCC-CCEEEEEcCCCeEEEEECCC
Confidence            99999999943210                          1112356778999999997 78999999999999999954


Q ss_pred             CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ....            ...+        .+.. .|++++|+|++.+|+ ++.|+.|++|++.+.
T Consensus       245 ~~~~------------~~~~--------~~~~-~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~  286 (343)
T 2xzm_R          245 LTYP------------QREF--------DAGS-TINQIAFNPKLQWVA-VGTDQGVKIFNLMTQ  286 (343)
T ss_dssp             CSSC------------SEEE--------ECSS-CEEEEEECSSSCEEE-EEESSCEEEEESSSC
T ss_pred             Cccc------------ceee--------cCCC-cEEEEEECCCCCEEE-EECCCCEEEEEeCCC
Confidence            3211            1111        0111 499999999998765 556888999999874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-31  Score=287.07  Aligned_cols=132  Identities=18%  Similarity=0.267  Sum_probs=112.7

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~--~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~  118 (763)
                      +++..+++|.+.|++++|+|++++||+|+.|+.|+|||+.  +++.+..+ .+|...|++++|+|+.++.+|++++.||.
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            4677899999999999999999999999999999999998  55667777 79999999999987633689999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC-CCEEEEEeCCCcEEEEECCCCC
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGS  181 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~~~~~  181 (763)
                      |++||+..+.        ...+..+..|...|.+++|+|++ +.+|++++.|+.|++||++...
T Consensus        81 v~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  136 (379)
T 3jrp_A           81 VLIWKEENGR--------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG  136 (379)
T ss_dssp             EEEEEEETTE--------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred             EEEEEcCCCc--------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence            9999998632        12467778899999999999942 6899999999999999998764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-32  Score=300.82  Aligned_cols=230  Identities=14%  Similarity=0.102  Sum_probs=177.5

Q ss_pred             CCcccccccccchhhhhcccc--ceeeccccCceEEEEeCCC------CCEEEEEeCCCcEEEEeCCCCeE---------
Q 004290           22 TRPDVNHSLQMHSSLVRRLSQ--ERELEGHQGCVNAISWNSK------GSLLISGSDDTHINVWSYSSRKL---------   84 (763)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~--~~~l~gH~~~V~~l~fsp~------g~~Lasgs~D~~v~iWd~~~~~~---------   84 (763)
                      .+.+.+..|++|+....+...  ...+.+|.+.|++|+|+|+      +.+||+|+.|++|+|||+.++..         
T Consensus       177 aS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~  256 (524)
T 2j04_B          177 DKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE  256 (524)
T ss_dssp             -----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCC
T ss_pred             ccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeec
Confidence            345678899999854333221  2457788999999999996      57999999999999999987632         


Q ss_pred             --EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEE--EEecCCC
Q 004290           85 --LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL--AVEVGNP  160 (763)
Q Consensus        85 --~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~~sp~~~  160 (763)
                        ...+ .+|...|++++|+|+   ..|++|+.||+|++||++++.         .+...+.+|...|++|  +|+| ++
T Consensus       257 ~p~~~l-~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~---------~~~~~~~~H~~~V~sv~~~~s~-~g  322 (524)
T 2j04_B          257 KPSLTL-SLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPE---------VPSFYDQVHDSYILSVSTAYSD-FE  322 (524)
T ss_dssp             SCSEEE-CCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCS---------SCSEEEECSSSCEEEEEEECCT-TS
T ss_pred             CceEEE-EcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCC---------CceEEeecccccEEEEEEEcCC-CC
Confidence              1345 689999999999986   489999999999999998632         2356688999999999  4566 55


Q ss_pred             -CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCc
Q 004290          161 -HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF  239 (763)
Q Consensus       161 -~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~  239 (763)
                       .+|+|++.|++|++||+++++..           ..+...            .....|.+++|+|+ +..|++++.|++
T Consensus       323 ~~~laS~S~D~tvklWD~~~~~~~-----------~~~~~~------------~~~~~v~~v~fsp~-~~~l~s~~~d~t  378 (524)
T 2j04_B          323 DTVVSTVAVDGYFYIFNPKDIATT-----------KTTVSR------------FRGSNLVPVVYCPQ-IYSYIYSDGASS  378 (524)
T ss_dssp             CCEEEEEETTSEEEEECGGGHHHH-----------CEEEEE------------CSCCSCCCEEEETT-TTEEEEECSSSE
T ss_pred             CeEEEEeccCCeEEEEECCCCCcc-----------cccccc------------cccCcccceEeCCC-cCeEEEeCCCCc
Confidence             89999999999999999876521           111100            00124788999997 678999999999


Q ss_pred             EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      |++||++++..+..+                    .+|.. .|++|+|+|+|++|++|+.|++|++||+..
T Consensus       379 v~lwd~~~~~~~~~l--------------------~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          379 LRAVPSRAAFAVHPL--------------------VSRET-TITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EEEEETTCTTCCEEE--------------------EECSS-CEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             EEEEECcccccceee--------------------ecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            999999986543222                    34555 699999999999999999999999999865

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.2e-31  Score=285.85  Aligned_cols=224  Identities=17%  Similarity=0.274  Sum_probs=185.8

Q ss_pred             cccccccccchhhhhccccceeecc-ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~g-H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~  102 (763)
                      ...++.+++|+.  .+.+....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|+
T Consensus       109 ~~~d~~v~lw~~--~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~  185 (401)
T 4aez_A          109 VALERNVYVWNA--DSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSWN  185 (401)
T ss_dssp             EEETTEEEEEET--TTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEE
T ss_pred             EECCCeEEEeeC--CCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEEC
Confidence            345788999984  44455555554 8999999999999999999999999999999999999998 7999999999994


Q ss_pred             eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                          +.+|++++.|+.|++||++...         .....+.+|.+.|.+++|+| ++.+|++++.||.|++||+++.+.
T Consensus       186 ----~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~  251 (401)
T 4aez_A          186 ----RHVLSSGSRSGAIHHHDVRIAN---------HQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIP  251 (401)
T ss_dssp             ----TTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSE
T ss_pred             ----CCEEEEEcCCCCEEEEecccCc---------ceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCc
Confidence                4699999999999999998532         34677889999999999999 678999999999999999987652


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe--CCCcEEEEeCCCCCCCcccCCCCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSP  260 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs--~Dg~i~iwd~~~~~~~~~~~~~~~~  260 (763)
                      .                         .....|...|.+++|+|++..++++++  .|+.|++||+++++.+..+.     
T Consensus       252 ~-------------------------~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-----  301 (401)
T 4aez_A          252 K-------------------------FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-----  301 (401)
T ss_dssp             E-------------------------EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-----
T ss_pred             c-------------------------EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-----
Confidence            1                         112246778999999998778888876  79999999999876443221     


Q ss_pred             CCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCeEEEEECCCC
Q 004290          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNHA  311 (763)
Q Consensus       261 ~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s--~d~~i~iwd~~~~  311 (763)
                                      +.. .|++++|+|++++|++++  .|+.|++|++.++
T Consensus       302 ----------------~~~-~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          302 ----------------AGS-QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             ----------------CSS-CEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred             ----------------CCC-cEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence                            112 599999999999999954  7999999998773

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-32  Score=296.12  Aligned_cols=225  Identities=13%  Similarity=0.174  Sum_probs=157.6

Q ss_pred             cchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee-CCCCcEE
Q 004290           32 MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETSDELV  110 (763)
Q Consensus        32 ~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p-~~~~~~l  110 (763)
                      ....++++++..-.+....      .|+|++..+++++      .|+ .+++.+..+..+|...|++++|+| +  +.+|
T Consensus        15 ~~~~~l~~~~~~p~~~~~~------~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~--~~~l   79 (437)
T 3gre_A           15 SIEKFLSTFKILPPLRDYK------EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGE--TPYL   79 (437)
T ss_dssp             CCGGGTTCC-CCCCGGGCG------GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSS--SCEE
T ss_pred             HHHHHhccCCCCCChhchh------hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCC--CCEE
Confidence            3344444444444443322      3788998888765      488 457788888678999999999999 7  7999


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECC---CCCCCCCCC
Q 004290          111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR---QGSSCPPAG  187 (763)
Q Consensus       111 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~  187 (763)
                      ++|+.||+|++||+.......    ...+...+ .|...|.+|+|+| ++.+|++++.||.|++||+.   .++..    
T Consensus        80 ~s~s~dg~v~vwd~~~~~~~~----~~~~~~~~-~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~----  149 (437)
T 3gre_A           80 ITGSDQGVIKIWNLKEIIVGE----VYSSSLTY-DCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEV----  149 (437)
T ss_dssp             EEEETTSEEEEEEHHHHHTTC----CCSCSEEE-ECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEE----
T ss_pred             EEecCCceEEEeECcccccCc----ccceeeec-cCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCcee----
Confidence            999999999999997511100    01223333 5999999999999 67899999999999999995   33211    


Q ss_pred             CCCcccceEEEecCCCceeeccCCC-CCccceEEEE--EeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcc
Q 004290          188 SSHQECRNILLDLRCGAKRSLADPP-KQTLSLKSCD--ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (763)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~--~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (763)
                             ..+ ...  ....+...+ ++...+.++.  ++|+ +.+|++|+.|+.|++||+++++.+..+..        
T Consensus       150 -------~~~-~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------  210 (437)
T 3gre_A          150 -------KFL-NCE--CIRKINLKNFGKNEYAVRMRAFVNEE-KSLLVALTNLSRVIIFDIRTLERLQIIEN--------  210 (437)
T ss_dssp             -------EEE-EEE--EEEEEEGGGGSSCCCEEEEEEEECSS-CEEEEEEETTSEEEEEETTTCCEEEEEEC--------
T ss_pred             -------ecc-ccc--eeEEEEccCcccccCceEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeeeEEEcc--------
Confidence                   000 000  111111111 1345677777  5575 68999999999999999998764433210        


Q ss_pred             cccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       265 ~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                                ..|.. .|++++|+|++++|++++.|+.|++||++++
T Consensus       211 ----------~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  246 (437)
T 3gre_A          211 ----------SPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFN  246 (437)
T ss_dssp             ----------CGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             ----------CCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCc
Confidence                      01333 6999999999999999999999999999873

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=1.6e-31  Score=289.20  Aligned_cols=212  Identities=21%  Similarity=0.216  Sum_probs=165.5

Q ss_pred             CceEEEEeCCCCCE-EEEEeCCCcEEEEeCCCCeE----EEEEccCCCCceEEEEEee-CCCCcEEEEEeCCCcEEEEEC
Q 004290           51 GCVNAISWNSKGSL-LISGSDDTHINVWSYSSRKL----LHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNL  124 (763)
Q Consensus        51 ~~V~~l~fsp~g~~-Lasgs~D~~v~iWd~~~~~~----~~~~~~~h~~~V~~v~~~p-~~~~~~l~s~s~dg~I~iwd~  124 (763)
                      .....++++|+... +++++.||.|+|||+.+...    +..+ .+|...|++++|+| +  +.+|++|+.||.|++||+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~--~~~l~s~s~dg~v~vw~~  111 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHN--DNVIASGSEDCTVMVWEI  111 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTC--TTEEEEEETTSEEEEEEC
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCC--CCEEEEEeCCCeEEEEEc
Confidence            34556889987754 44688999999999966432    2334 68999999999999 6  799999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                      .......   ....++..+.+|...|.+++|+|++..+|++++.||.|++||+++++..              ..+    
T Consensus       112 ~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--------------~~~----  170 (402)
T 2aq5_A          112 PDGGLVL---PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV--------------LTL----  170 (402)
T ss_dssp             CTTCCSS---CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE--------------EEE----
T ss_pred             cCCCCcc---ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc--------------EEE----
Confidence            8742110   0114477888999999999999965579999999999999999876521              100    


Q ss_pred             eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (763)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  284 (763)
                           ....|...|.+++|+|+ +++|++++.|+.|++||+++++.+..+.                   .+|....+.+
T Consensus       171 -----~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------------~~~~~~~~~~  225 (402)
T 2aq5_A          171 -----GPDVHPDTIYSVDWSRD-GALICTSCRDKRVRVIEPRKGTVVAEKD-------------------RPHEGTRPVH  225 (402)
T ss_dssp             -----CTTTCCSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEE-------------------CSSCSSSCCE
T ss_pred             -----ecCCCCCceEEEEECCC-CCEEEEEecCCcEEEEeCCCCceeeeec-------------------cCCCCCcceE
Confidence                 01346778999999996 7899999999999999999865432220                   1244435899


Q ss_pred             EEEcCCCCEEEEE---eCCCeEEEEECCCC
Q 004290          285 VTFSPNGEEVLLS---YSGEHVYLMDVNHA  311 (763)
Q Consensus       285 v~~spdg~~l~~~---s~d~~i~iwd~~~~  311 (763)
                      ++|+|++++|+++   +.|+.|++||+.+.
T Consensus       226 ~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          226 AVFVSEGKILTTGFSRMSERQVALWDTKHL  255 (402)
T ss_dssp             EEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred             EEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence            9999999999999   78999999999874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.98  E-value=2.9e-30  Score=281.81  Aligned_cols=223  Identities=15%  Similarity=0.181  Sum_probs=160.0

Q ss_pred             CceEEEEeCCCC----------CEEEEEeC----CCcEEEEeCC--------------------------CCeEEEEEcc
Q 004290           51 GCVNAISWNSKG----------SLLISGSD----DTHINVWSYS--------------------------SRKLLHSIET   90 (763)
Q Consensus        51 ~~V~~l~fsp~g----------~~Lasgs~----D~~v~iWd~~--------------------------~~~~~~~~~~   90 (763)
                      -+..++.|.|+.          .+|+.|+.    ...|.+.++.                          +++.......
T Consensus        46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  125 (430)
T 2xyi_A           46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI  125 (430)
T ss_dssp             SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred             CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence            467889999864          46777764    3456676532                          1222212225


Q ss_pred             CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC
Q 004290           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  170 (763)
Q Consensus        91 ~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg  170 (763)
                      .|.+.|++++|+|+. +.+|++++.||.|++||+..............++..+.+|...|.+|+|+|.+..+|++++.||
T Consensus       126 ~h~~~v~~l~~~p~~-~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  204 (430)
T 2xyi_A          126 NHEGEVNRARYMPQN-ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH  204 (430)
T ss_dssp             EESSCCSEEEEETTE-EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred             cCCCcEEEEEECCCC-CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence            799999999999973 5799999999999999998621111101113557888899999999999996655999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 004290          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (763)
Q Consensus       171 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~  250 (763)
                      .|++||+......          ...+        ........|...|.+++|+|.++.+|++++.|+.|++||+++...
T Consensus       205 ~i~vwd~~~~~~~----------~~~~--------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~  266 (430)
T 2xyi_A          205 TICLWDINATPKE----------HRVI--------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT  266 (430)
T ss_dssp             CEEEEETTSCCBG----------GGEE--------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred             eEEEEeCCCCCCC----------Ccee--------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence            9999999875321          0000        011222357788999999997688999999999999999997631


Q ss_pred             CcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCeEEEEECCC
Q 004290          251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~-~l~~~s~d~~i~iwd~~~  310 (763)
                      ..          ++..+       .+|.. .|++++|+|+++ +|++++.|+.|++||+++
T Consensus       267 ~~----------~~~~~-------~~~~~-~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~  309 (430)
T 2xyi_A          267 SK----------PSHTV-------DAHTA-EVNCLSFNPYSEFILATGSADKTVALWDLRN  309 (430)
T ss_dssp             SS----------CSEEE-------ECCSS-CEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             Cc----------ceeEe-------ecCCC-CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence            10          11111       23444 599999999997 588999999999999987

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=1.2e-30  Score=285.48  Aligned_cols=193  Identities=14%  Similarity=0.120  Sum_probs=160.0

Q ss_pred             CcccccccccchhhhhccccceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEccC--CCCceEEE
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCT   99 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~--h~~~V~~v   99 (763)
                      .+..+..|++|+...........+.+|.+.|++|+|+| ++.+|+||+.|++|+|||++++...... ..  +...+.++
T Consensus       137 sGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~  215 (435)
T 4e54_B          137 VGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA-SSDTINIWFCSL  215 (435)
T ss_dssp             EEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE-CCSSCSCCCCCE
T ss_pred             EEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe-ccCCCCccEEEE
Confidence            45678999999966666666777889999999999998 7899999999999999999876543333 33  34567899


Q ss_pred             EEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (763)
Q Consensus       100 ~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~  179 (763)
                      +|+|+  +.+|++|+.||.|++||++.           ..+..+.+|...|.+++|+|++..+|++++.|+.|++||+++
T Consensus       216 ~~~~~--~~~l~~g~~dg~i~~wd~~~-----------~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~  282 (435)
T 4e54_B          216 DVSAS--SRMVVTGDNVGNVILLNMDG-----------KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ  282 (435)
T ss_dssp             EEETT--TTEEEEECSSSBEEEEESSS-----------CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred             EECCC--CCEEEEEeCCCcEeeeccCc-----------ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence            99999  79999999999999999974           336678899999999999997778999999999999999988


Q ss_pred             CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCc
Q 004290          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT  252 (763)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~  252 (763)
                      .+...                      .+....+|...|++++|+|+ +.+|++++.|+.|+|||++++....
T Consensus       283 ~~~~~----------------------~~~~~~~h~~~v~~~~~spd-g~~l~s~~~D~~i~iwd~~~~~~~~  332 (435)
T 4e54_B          283 VRGKA----------------------SFLYSLPHRHPVNAACFSPD-GARLLTTDQKSEIRVYSASQWDCPL  332 (435)
T ss_dssp             CCSSS----------------------CCSBCCBCSSCEEECCBCTT-SSEEEEEESSSCEEEEESSSSSSEE
T ss_pred             ccccc----------------------eEEEeeeccccccceeECCC-CCeeEEEcCCCEEEEEECCCCccce
Confidence            75321                      12223357788999999997 7899999999999999999876443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.1e-31  Score=285.74  Aligned_cols=220  Identities=12%  Similarity=0.083  Sum_probs=143.7

Q ss_pred             CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCc-EEEEEeCCCcEEEEEC----CCCCCCCCCCCCCCCceeee--
Q 004290           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNL----SRFSGRGLDDNAITPSALYQ--  144 (763)
Q Consensus        72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~-~l~s~s~dg~I~iwd~----~~~~~~~~~~~~~~~~~~~~--  144 (763)
                      ..+.+|++......... ..|...|.+++|+|+  +. +|++|+.|+.|++||+    ..+.....    ......+.  
T Consensus        25 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~   97 (425)
T 1r5m_A           25 SIDSSDDLDGFVKILKE-IVKLDNIVSSTWNPL--DESILAYGEKNSVARLARIVETDQEGKKYWK----LTIIAELRHP   97 (425)
T ss_dssp             ---------CCCEECEE-EEECSCCSEEEECSS--CTTEEEEEETBTEEEEEEEEEC------CEE----EEEEEEEECC
T ss_pred             cccccccchhhhhheee-eeccCceEEEEECCC--CCcEEEEecCCceEEEEEEecccCCcccccc----cccccccccc
Confidence            34568888766555444 467799999999999  67 9999999999999999    65321000    00122222  


Q ss_pred             --------cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCcc
Q 004290          145 --------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL  216 (763)
Q Consensus       145 --------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (763)
                              +|.+.|++++|+| ++.+|++++.||.|++||. +++.                         +.....|..
T Consensus        98 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~~-~~~~-------------------------~~~~~~~~~  150 (425)
T 1r5m_A           98 FALSASSGKTTNQVTCLAWSH-DGNSIVTGVENGELRLWNK-TGAL-------------------------LNVLNFHRA  150 (425)
T ss_dssp             CCCC------CBCEEEEEECT-TSSEEEEEETTSCEEEEET-TSCE-------------------------EEEECCCCS
T ss_pred             ccccccccCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeC-CCCe-------------------------eeeccCCCc
Confidence                    2688999999999 6789999999999999993 3221                         112235678


Q ss_pred             ceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEE
Q 004290          217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  296 (763)
Q Consensus       217 ~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~  296 (763)
                      .|.+++|+|+ +++|++++.|+.|++||+++++.+..+.....+.......      ........+.+++|+|++ .+++
T Consensus       151 ~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~  222 (425)
T 1r5m_A          151 PIVSVKWNKD-GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE------NHSGDGSLGVDVEWVDDD-KFVI  222 (425)
T ss_dssp             CEEEEEECTT-SSEEEEEETTCCEEEEETTTTEEEEEECCC---------------------CCCBSCCEEEETT-EEEE
T ss_pred             cEEEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec------cccCCcceeeEEEEcCCC-EEEE
Confidence            8999999997 6899999999999999999876554432211110000000      000111138899999986 4889


Q ss_pred             EeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004290          297 SYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (763)
Q Consensus       297 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (763)
                      ++.|+.|++||+.++........+...+..++|+|+.
T Consensus       223 ~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~  259 (425)
T 1r5m_A          223 PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN  259 (425)
T ss_dssp             ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred             EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence            9999999999999976555555666777788888753

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=1.8e-30  Score=301.59  Aligned_cols=232  Identities=20%  Similarity=0.239  Sum_probs=186.6

Q ss_pred             CCcccccccccchhhhhc---cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEE
Q 004290           22 TRPDVNHSLQMHSSLVRR---LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC   98 (763)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~---~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~   98 (763)
                      .+.+.++.|++|+.....   ....+.+.+|...|++++|+|+|++|++|+.|++|+|||+.+++.+..+ .+|...|.+
T Consensus       399 ~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~  477 (694)
T 3dm0_A          399 VSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLS  477 (694)
T ss_dssp             EEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEE
T ss_pred             EEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE-eCCCCCEEE
Confidence            346678999999843222   2345789999999999999999999999999999999999999999988 799999999


Q ss_pred             EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC-CCEEEEEeCCCcEEEEEC
Q 004290           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDF  177 (763)
Q Consensus        99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~  177 (763)
                      ++|+|+  +.+|++|+.|++|++||.......       .......+|...|.+++|+|++ ..++++++.|++|++||+
T Consensus       478 ~~~s~~--~~~l~s~s~D~~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~  548 (694)
T 3dm0_A          478 VAFSLD--NRQIVSASRDRTIKLWNTLGECKY-------TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL  548 (694)
T ss_dssp             EEECTT--SSCEEEEETTSCEEEECTTSCEEE-------EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred             EEEeCC--CCEEEEEeCCCEEEEEECCCCcce-------eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEEC
Confidence            999999  799999999999999998642100       0112235789999999999954 258999999999999999


Q ss_pred             CCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCC
Q 004290          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  257 (763)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~  257 (763)
                      ++.+.                         .....+|...|++++|+|+ +++|++|+.|+.|++||+++++.+..+   
T Consensus       549 ~~~~~-------------------------~~~~~~h~~~v~~v~~spd-g~~l~sg~~Dg~i~iwd~~~~~~~~~~---  599 (694)
T 3dm0_A          549 SNCKL-------------------------RSTLAGHTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKLYSL---  599 (694)
T ss_dssp             TTCCE-------------------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSBCEEEETTTTEEEECC---
T ss_pred             CCCcE-------------------------EEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCceEEEe---
Confidence            87642                         1122357788999999997 789999999999999999987544322   


Q ss_pred             CCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                                       ..+  ..|++++|+|++.+|+++ .++.|++||+.++.
T Consensus       600 -----------------~~~--~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~  634 (694)
T 3dm0_A          600 -----------------EAN--SVIHALCFSPNRYWLCAA-TEHGIKIWDLESKS  634 (694)
T ss_dssp             -----------------BCS--SCEEEEEECSSSSEEEEE-ETTEEEEEETTTTE
T ss_pred             -----------------cCC--CcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCC
Confidence                             111  259999999999876665 46679999998853

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=9.4e-30  Score=265.49  Aligned_cols=228  Identities=16%  Similarity=0.218  Sum_probs=181.2

Q ss_pred             cccccccccchhhhhcccccee--eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEE
Q 004290           24 PDVNHSLQMHSSLVRRLSQERE--LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF  101 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~--l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~  101 (763)
                      ...++.|++|+.  .+.++++.  +.+|...|++++|+|++++||+|+.|++|+|||+++++.+..+ .+|...+.++.+
T Consensus        41 vg~D~tV~iWd~--~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~  117 (318)
T 4ggc_A           41 VALDNSVYLWSA--SSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSW  117 (318)
T ss_dssp             EEETTEEEEEET--TTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEE
T ss_pred             EEeCCEEEEEEC--CCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe-cCccceEEEeec
Confidence            346899999994  44555554  4578889999999999999999999999999999999999998 799998887665


Q ss_pred             eeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (763)
Q Consensus       102 ~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~  181 (763)
                      .    +.++++++.++.+++|+.....         ..+..+.+|...+..+.+.+ .+.++++++.||.|++||+++++
T Consensus       118 ~----~~~l~s~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          118 N----SYILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             E----TTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBT
T ss_pred             C----CCEEEEEecCCceEeeecCCCc---------eeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCc
Confidence            5    4699999999999999988632         34677889999999999999 66899999999999999998875


Q ss_pred             CCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEE--EEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004290          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL--LVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (763)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l--~sgs~Dg~i~iwd~~~~~~~~~~~~~~~  259 (763)
                      ....                     .......+...|.+++++|.++..+  ++++.++.|++||.+........     
T Consensus       184 ~~~~---------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-----  237 (318)
T 4ggc_A          184 GGWV---------------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-----  237 (318)
T ss_dssp             TBSC---------------------CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-----
T ss_pred             cccc---------------------ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-----
Confidence            3210                     1111223556789999999876665  45667899999999876432111     


Q ss_pred             CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCeEEEEECCCC
Q 004290          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNHA  311 (763)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s--~d~~i~iwd~~~~  311 (763)
                                      .+.. .+..+.|+|++..+++++  .|+.|++||+.++
T Consensus       238 ----------------~~~~-~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~  274 (318)
T 4ggc_A          238 ----------------DAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  274 (318)
T ss_dssp             ----------------ECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             ----------------ccee-eeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence                            1222 599999999999988776  5999999998774

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=2.2e-30  Score=278.33  Aligned_cols=179  Identities=17%  Similarity=0.158  Sum_probs=141.3

Q ss_pred             EEeCCCCeEEEEEccCCCCceEEEEEeeCCCC-cEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEE
Q 004290           76 VWSYSSRKLLHSIETGHSANVFCTKFVPETSD-ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLA  154 (763)
Q Consensus        76 iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  154 (763)
                      +|++...+....+ .+|...|++++|+|+  + .+|++|+.|+.|++||+.....        .......+|...|.+++
T Consensus        57 ~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~h~~~v~~~~  125 (383)
T 3ei3_B           57 IRSLKSYKLHRTA-SPFDRRVTSLEWHPT--HPTTVAVGSKGGDIILWDYDVQNK--------TSFIQGMGPGDAITGMK  125 (383)
T ss_dssp             HHHHTTCEEEEEE-CCCSSCEEEEEECSS--CTTEEEEEEBTSCEEEEETTSTTC--------EEEECCCSTTCBEEEEE
T ss_pred             cccccccceEEec-cCCCCCEEEEEECCC--CCCEEEEEcCCCeEEEEeCCCccc--------ceeeecCCcCCceeEEE
Confidence            3444566667777 799999999999999  6 8999999999999999986432        11222346999999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEE
Q 004290          155 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG  234 (763)
Q Consensus       155 ~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sg  234 (763)
                      |+|+++.+|++++.|+.|++||++...                       ...+.....+...|.+++|+|+ +.+|++|
T Consensus       126 ~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~  181 (383)
T 3ei3_B          126 FNQFNTNQLFVSSIRGATTLRDFSGSV-----------------------IQVFAKTDSWDYWYCCVDVSVS-RQMLATG  181 (383)
T ss_dssp             EETTEEEEEEEEETTTEEEEEETTSCE-----------------------EEEEECCCCSSCCEEEEEEETT-TTEEEEE
T ss_pred             eCCCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEeccCCCCCCeEEEEECCC-CCEEEEE
Confidence            999667899999999999999998532                       1122223345678999999997 6899999


Q ss_pred             eCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 004290          235 GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       235 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~-~l~~~s~d~~i~iwd~~~~  311 (763)
                      +.|+.|++||++ ++.+.             .+       .+|.. .|++++|+|+++ +|++++.|+.|++||+.+.
T Consensus       182 ~~d~~i~i~d~~-~~~~~-------------~~-------~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  237 (383)
T 3ei3_B          182 DSTGRLLLLGLD-GHEIF-------------KE-------KLHKA-KVTHAEFNPRCDWLMATSSVDATVKLWDLRNI  237 (383)
T ss_dssp             ETTSEEEEEETT-SCEEE-------------EE-------ECSSS-CEEEEEECSSCTTEEEEEETTSEEEEEEGGGC
T ss_pred             CCCCCEEEEECC-CCEEE-------------Ee-------ccCCC-cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCC
Confidence            999999999995 32221             11       23444 599999999999 8999999999999999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=1.1e-29  Score=267.64  Aligned_cols=177  Identities=20%  Similarity=0.276  Sum_probs=136.5

Q ss_pred             CCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC
Q 004290           81 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP  160 (763)
Q Consensus        81 ~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  160 (763)
                      +.+...++ .||.+.|++|+|+|+. +++|+||+.|++|+|||+.......     ..+...+.+|...|.+++|+| ++
T Consensus        27 ~~~l~~tL-~GH~~~V~~v~~sp~~-~~~l~S~s~D~~i~vWd~~~~~~~~-----~~~~~~l~~h~~~V~~~~~s~-dg   98 (340)
T 4aow_A           27 QMTLRGTL-KGHNGWVTQIATTPQF-PDMILSASRDKTIIMWKLTRDETNY-----GIPQRALRGHSHFVSDVVISS-DG   98 (340)
T ss_dssp             EEEEEEEE-CCCSSCEEEEEECTTC-TTEEEEEETTSCEEEEEECCSSSCS-----EEEEEEECCCSSCEEEEEECT-TS
T ss_pred             ceEEEEEE-CCccCCEEEEEEeCCC-CCEEEEEcCCCeEEEEECCCCCccc-----ceeeEEEeCCCCCEEEEEECC-CC
Confidence            33455567 8999999999999984 6899999999999999998643221     234677889999999999999 67


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004290          161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (763)
Q Consensus       161 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i  240 (763)
                      .+|++++.|+.|++|+.......                         .....+...+..+.+++. +.+|++++.|+.+
T Consensus        99 ~~l~s~~~d~~i~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~~  152 (340)
T 4aow_A           99 QFALSGSWDGTLRLWDLTTGTTT-------------------------RRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTI  152 (340)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEE-------------------------EEEECCSSCEEEEEECTT-SSCEEEEETTSCE
T ss_pred             CEEEEEcccccceEEeeccccee-------------------------eeecCCCCceeEEEEeec-CccceeecCCCeE
Confidence            89999999999999998876421                         001123456778888887 6899999999999


Q ss_pred             EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC--CEEEEEeCCCeEEEEECCCC
Q 004290          241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg--~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ++||+.......                   ....+|.. .+..++|++++  .++++++.|+.|++||+.++
T Consensus       153 ~~~d~~~~~~~~-------------------~~~~~~~~-~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~  205 (340)
T 4aow_A          153 KLWNTLGVCKYT-------------------VQDESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC  205 (340)
T ss_dssp             EEECTTSCEEEE-------------------ECSSSCSS-CEEEEEECSCSSSCEEEEEETTSCEEEEETTTT
T ss_pred             EEEEeCCCceEE-------------------EEeccccC-cccceEEccCCCCcEEEEEcCCCEEEEEECCCC
Confidence            999987543211                   11133444 59999999865  56888999999999998773

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-30  Score=280.35  Aligned_cols=199  Identities=15%  Similarity=0.174  Sum_probs=144.0

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~  127 (763)
                      .-...|.+|+|+|||++|||++.|++|+  |...++.+    .+|...|++++|+|+  |       .++.+.+|+.+. 
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l----~gh~~~v~~V~FsPd--g-------~~~~~~~~~~~~-   76 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI----NCNSKNLFHVKEFPL--E-------FENKLDFELAQQ-   76 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC----SSBGGGTEEEEEECC--C-------CCCTTTTSCCCS-
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee----cCCCccEEEEEECCC--C-------CcceEEEEeCCC-
Confidence            3457899999999999999999999999  76665433    689999999999999  5       466665555442 


Q ss_pred             CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (763)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (763)
                        .        ....+ .|...|.+++|+| ++.+|++++.||.|++||...                .+..+. .    
T Consensus        77 --~--------~~~~~-~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~----------------~l~~l~-~----  123 (588)
T 2j04_A           77 --N--------GLLNS-QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK----------------MLTNLD-S----  123 (588)
T ss_dssp             --S--------CSSTT-SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE----------------EEEECC-C----
T ss_pred             --c--------eEeec-CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc----------------eeeecc-C----
Confidence              1        12222 4588999999999 678999999999999999432                111000 0    


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcc-cCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004290          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS-CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (763)
Q Consensus       208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~  286 (763)
                        ..+-....+.+++|+|+ +++||+|+.||+|+|||+..+..... +       ..+..+   .....||.. +|.+++
T Consensus       124 --~~~~~~~sv~svafSPD-G~~LAsgs~DGtVkIWd~~~~~l~~~~~-------i~l~ti---~~~~~gh~~-~V~sVa  189 (588)
T 2j04_A          124 --KGNLSSRTYHCFEWNPI-ESSIVVGNEDGELQFFSIRKNSENTPEF-------YFESSI---RLSDAGSKD-WVTHIV  189 (588)
T ss_dssp             --SSCSTTTCEEEEEECSS-SSCEEEEETTSEEEEEECCCCTTTCCCC-------EEEEEE---ECSCTTCCC-CEEEEE
T ss_pred             --CCccccccEEEEEEcCC-CCEEEEEcCCCEEEEEECCCCccccccc-------eeeeee---ecccccccc-cEEEEE
Confidence              00001235899999997 79999999999999999987642100 0       000110   011134554 799999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          287 FSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       287 ~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      |+|||  |++++.|+.|++|++.+.
T Consensus       190 wSPdg--Laass~D~tVrlWd~~~~  212 (588)
T 2j04_A          190 WYEDV--LVAALSNNSVFSMTVSAS  212 (588)
T ss_dssp             EETTE--EEEEETTCCEEEECCCSS
T ss_pred             EcCCc--EEEEeCCCeEEEEECCCC
Confidence            99999  889999999999998773

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.1e-30  Score=281.52  Aligned_cols=174  Identities=14%  Similarity=0.076  Sum_probs=119.0

Q ss_pred             CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEec-------CCCCEEEEEeCCCcEEEEECCC
Q 004290          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-------GNPHVVWSASEDGTLRQHDFRQ  179 (763)
Q Consensus       107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-------~~~~~l~s~s~dg~i~iwd~~~  179 (763)
                      +.+|++++.|++|+|||+..+....     ..++..+.+|.+.|++|+|+|       .++++|+|++.|++|++||+++
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~-----~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIIT-----QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEE-----EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred             CCEEEEEeCCCcEEEEECCCCccce-----eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence            5689999999999999998643211     123456789999999999987       2568999999999999999987


Q ss_pred             CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004290          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (763)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~  259 (763)
                      ...+           ..+              ..|...|.+++|+|+++.+|++|+.|++|++||+++++..........
T Consensus       176 ~~~~-----------~~~--------------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~  230 (393)
T 4gq1_A          176 EGPI-----------LAG--------------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL  230 (393)
T ss_dssp             TEEE-----------EEE--------------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred             Ccee-----------eee--------------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence            6421           111              135568999999998667899999999999999998875443321111


Q ss_pred             CC--Cccccc-cc--ccccCCCCCccceeEEEEc-CCCCEEEEEeCCCeEEEEECCCC
Q 004290          260 PP--PCVNYF-CP--MHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       260 ~~--~~~~~~-~~--~~~~~~g~~~~~i~~v~~s-pdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ..  .+.... .+  ......+|.. .+.++.|+ |+++.|++++.|+.+++||+..+
T Consensus       231 ~~~~~~~s~~~~~~~~~~~~~~~~~-~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~  287 (393)
T 4gq1_A          231 VKNPWLLTLNTLPLVNTCHSSGIAS-SLANVRWIGSDGSGILAMCKSGAWLRWNLFAN  287 (393)
T ss_dssp             CSCCCSEEEESGGGC------CCSS-SCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred             cccceEEecccccceeeeecccccc-cceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence            00  000000 00  0011134554 58999987 89999999999999999999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=2.3e-30  Score=279.51  Aligned_cols=264  Identities=11%  Similarity=0.116  Sum_probs=193.9

Q ss_pred             CCchhhhhhccccCCCcccccccccchhhhhc----cccceeeccccCceEEEEeCCC----C---CEEEEEeCCCcEEE
Q 004290            8 DGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRR----LSQERELEGHQGCVNAISWNSK----G---SLLISGSDDTHINV   76 (763)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~gH~~~V~~l~fsp~----g---~~Lasgs~D~~v~i   76 (763)
                      ...+..+.....+-.....+..|++|+.....    .+++..+.+|...|++++|+|+    |   ++|++++.|+.|++
T Consensus        16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i   95 (397)
T 1sq9_A           16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF   95 (397)
T ss_dssp             SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred             hcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence            33333333333334455678899999854443    3478899999999999999999    9   99999999999999


Q ss_pred             EeCCCCeE-----EEEEccCC-----CCceEEEEEe----eCCCCcE-EEEEeCCCcEEEEECCC------CCCCCCCCC
Q 004290           77 WSYSSRKL-----LHSIETGH-----SANVFCTKFV----PETSDEL-VVSGAGDAEVRLFNLSR------FSGRGLDDN  135 (763)
Q Consensus        77 Wd~~~~~~-----~~~~~~~h-----~~~V~~v~~~----p~~~~~~-l~s~s~dg~I~iwd~~~------~~~~~~~~~  135 (763)
                      ||+.+++.     +..+ ..|     ...|.+++|+    |+  +.+ |++++.|+.|++||+..      .....    
T Consensus        96 w~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----  168 (397)
T 1sq9_A           96 YRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRL--LSHRLVATDVKGTTYIWKFHPFADESNSLTLN----  168 (397)
T ss_dssp             EEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSSSHHHHTTTC----
T ss_pred             EEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCC--CceEEEEEeCCCcEEEEeCCccccccccceee----
Confidence            99998876     7777 678     5899999999    88  788 99999999999999986      32111    


Q ss_pred             CCCCceee-------ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290          136 AITPSALY-------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (763)
Q Consensus       136 ~~~~~~~~-------~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (763)
                       ..+...+       ..|...|.+++|+| ++ +|++++.||.|++||+++.+..              .        .+
T Consensus       169 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~--------------~--------~~  223 (397)
T 1sq9_A          169 -WSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPL--------------Y--------NF  223 (397)
T ss_dssp             -CCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEE--------------E--------EE
T ss_pred             -ccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCcee--------------E--------EE
Confidence             1112255       34899999999999 55 9999999999999999876421              1        11


Q ss_pred             cCCCCC---ccceEEEEEeCCCCcEEEEEeCC---CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccce
Q 004290          209 ADPPKQ---TLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (763)
Q Consensus       209 ~~~~~~---~~~v~~i~~~p~~~~~l~sgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i  282 (763)
                      .....|   ...|.+++|+|+ +.+|++++.|   +.|++||+++++.+..+..+..+....       .....|.. .|
T Consensus       224 ~~~~~h~~~~~~i~~i~~~~~-~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~v  294 (397)
T 1sq9_A          224 ESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS-------LGEFAHSS-WV  294 (397)
T ss_dssp             ECCC---CCCCCEEEEEECSS-TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------------CCBSBSS-CE
T ss_pred             eccccccccCCccceEEECCC-CCEEEEEecCCCCceEEEEECCCCcccceeccCccccccc-------ccccccCC-cE
Confidence            111125   678999999997 7899999999   999999999876554432110000000       00001333 69


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       283 ~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      ++++|+|++++|++++.|+.|++||+.+++
T Consensus       295 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          295 MSLSFNDSGETLCSAGWDGKLRFWDVKTKE  324 (397)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            999999999999999999999999998853

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=3.7e-29  Score=270.70  Aligned_cols=249  Identities=16%  Similarity=0.199  Sum_probs=182.2

Q ss_pred             Ccccccccccchhhhhccccceee-------------ccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 004290           23 RPDVNHSLQMHSSLVRRLSQEREL-------------EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSI   88 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l-------------~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~   88 (763)
                      ....+..+++|+...  .+....+             .+|...|++++|+| ++.+|++++.|+.|++||+.+++.+..+
T Consensus        61 ~~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  138 (408)
T 4a11_B           61 SGGSDGVIVLYDLEN--SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF  138 (408)
T ss_dssp             EEETTSCEEEEECCC--CSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEcCCCeEEEEECCC--CcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec
Confidence            345578899998443  3333333             36999999999999 7889999999999999999999988887


Q ss_pred             ccCCCCceEEEEEeeCC-CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe
Q 004290           89 ETGHSANVFCTKFVPET-SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  167 (763)
Q Consensus        89 ~~~h~~~V~~v~~~p~~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s  167 (763)
                        .+...+.++.|+|.. ++.++++++.|+.|++||+..+          .++..+.+|...|.+++|+|++..+|++++
T Consensus       139 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~  206 (408)
T 4a11_B          139 --NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG----------SCSHILQGHRQEILAVSWSPRYDYILATAS  206 (408)
T ss_dssp             --ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS----------CCCEEECCCCSCEEEEEECSSCTTEEEEEE
T ss_pred             --cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc----------ceeeeecCCCCcEEEEEECCCCCcEEEEEc
Confidence              377889999999963 1459999999999999999863          346778899999999999996666899999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                      .||.|++||++...........+...         ...........|...|.+++|+|+ +++|++++.|+.|++||+++
T Consensus       207 ~dg~i~i~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~  276 (408)
T 4a11_B          207 ADSRVKLWDVRRASGCLITLDQHNGK---------KSQAVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWNSSN  276 (408)
T ss_dssp             TTSCEEEEETTCSSCCSEECCTTTTC---------SCCCTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEECCCCCcccccccccccc---------cceeeccccccccCceeEEEEcCC-CCEEEEecCCCeEEEEECCC
Confidence            99999999999876331111100000         001112233567889999999997 78999999999999999998


Q ss_pred             CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ++..........              .....  .+........+..+++++.|+.|++||+.++
T Consensus       277 ~~~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~  324 (408)
T 4a11_B          277 GENTLVNYGKVC--------------NNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG  324 (408)
T ss_dssp             CCBCCCCCCCCC--------------CCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTC
T ss_pred             Cccceecccccc--------------ccccc--cceeEEecCCCceEEEEecCCEEEEEECcCC
Confidence            764432211100              00011  1222333344566788888999999998774

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=9e-30  Score=267.79  Aligned_cols=227  Identities=17%  Similarity=0.230  Sum_probs=183.7

Q ss_pred             eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE---EEEE-ccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004290           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---LHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (763)
Q Consensus        46 l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~---~~~~-~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i  121 (763)
                      ..+|.+.|++++|+|++++|++++ |+.|++||+.+++.   +..+ ..+|...|.+++|+|+  +++|++++.|+.|++
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLIVGGEASTLSI  123 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEEEEESSSEEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC--CCEEEEEcCCCcEEE
Confidence            347999999999999999999999 99999999987642   2222 1278999999999999  799999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004290          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (763)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  201 (763)
                      ||+..+..        .....+..|...|.+++|+| ++.++++++.||.|++||+++++..                  
T Consensus       124 ~d~~~~~~--------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~------------------  176 (337)
T 1gxr_A          124 WDLAAPTP--------RIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLV------------------  176 (337)
T ss_dssp             EECCCC----------EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE------------------
T ss_pred             EECCCCCc--------ceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCcee------------------
Confidence            99987431        23567788999999999999 6689999999999999999876421                  


Q ss_pred             CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccc
Q 004290          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (763)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  281 (763)
                             .....|...|.+++|+|+ +++|++++.|+.|++||+++++.+..+                     .+.. .
T Consensus       177 -------~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~---------------------~~~~-~  226 (337)
T 1gxr_A          177 -------RQFQGHTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQLQQH---------------------DFTS-Q  226 (337)
T ss_dssp             -------EEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE---------------------ECSS-C
T ss_pred             -------eeeecccCceEEEEECCC-CCEEEEEecCCcEEEEECCCCceEeee---------------------cCCC-c
Confidence                   112346678999999997 689999999999999999986533221                     1222 5


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004290          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (763)
Q Consensus       282 i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (763)
                      +.+++|+|++++|++++.|+.|++||+.++. ......+...+..++|+|+.
T Consensus       227 v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~  277 (337)
T 1gxr_A          227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCG  277 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTSSC-EEEECCCSSCEEEEEECTTS
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCCC-eEEEcCCccceeEEEECCCC
Confidence            9999999999999999999999999999854 33445556667778888753

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=3.2e-30  Score=273.67  Aligned_cols=229  Identities=15%  Similarity=0.182  Sum_probs=179.1

Q ss_pred             ccccccchhhhhccccceeeccccCceEEEEeCCC---CCEEEEEeCCCcEEEEeCCCCe-EEEEEccCCCCceEEEEEe
Q 004290           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK---GSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFV  102 (763)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~---g~~Lasgs~D~~v~iWd~~~~~-~~~~~~~~h~~~V~~v~~~  102 (763)
                      +..+++|+....+...... .+|...|++++|+|+   |.+|++|+.|+.|++||+.+++ .+..+ .+|...|.+++|.
T Consensus        43 d~~v~iw~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~  120 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGI  120 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEE
T ss_pred             CcEEEEEeCCCCcccceee-ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeec
Confidence            7889999854333332222 379999999999998   7999999999999999999887 77777 7999999999764


Q ss_pred             ------eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC----ceeEEE----EecCCCCEEEEEeC
Q 004290          103 ------PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR----RVKKLA----VEVGNPHVVWSASE  168 (763)
Q Consensus       103 ------p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~l~----~sp~~~~~l~s~s~  168 (763)
                            |+  +.+|++++.|+.|++||+....         .++..+..|.+    .|.+++    |+| ++.+|++++.
T Consensus       121 ~~~~~s~~--~~~l~~~~~d~~i~vwd~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~  188 (357)
T 3i2n_A          121 GGLGIGEG--APEIVTGSRDGTVKVWDPRQKD---------DPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYD  188 (357)
T ss_dssp             SGGGCC-C--CCEEEEEETTSCEEEECTTSCS---------SCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEET
T ss_pred             cccccCCC--ccEEEEEeCCCeEEEEeCCCCC---------CcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEcc
Confidence                  56  7899999999999999998743         23555655544    899998    566 6789999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeC---CCCcEEEEEeCCCcEEEEeC
Q 004290          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS---TRPHLLLVGGSDAFARLYDR  245 (763)
Q Consensus       169 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p---~~~~~l~sgs~Dg~i~iwd~  245 (763)
                      ||.|++||+++++..            ..              ..+...|.+++|+|   + +.+|++++.|+.|++||+
T Consensus       189 d~~i~i~d~~~~~~~------------~~--------------~~~~~~v~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~  241 (357)
T 3i2n_A          189 NGDIKLFDLRNMALR------------WE--------------TNIKNGVCSLEFDRKDIS-MNKLVATSLEGKFHVFDM  241 (357)
T ss_dssp             TSEEEEEETTTTEEE------------EE--------------EECSSCEEEEEESCSSSS-CCEEEEEESTTEEEEEEE
T ss_pred             CCeEEEEECccCcee------------ee--------------cCCCCceEEEEcCCCCCC-CCEEEEECCCCeEEEEeC
Confidence            999999999886521            00              12456799999999   5 689999999999999999


Q ss_pred             CCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCeEEEEECCCCC
Q 004290          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~-~l~~~s~d~~i~iwd~~~~~  312 (763)
                      ++++....+.             ..  ...+|.. .|++++|+|+++ +|++++.|+.|++||+..+.
T Consensus       242 ~~~~~~~~~~-------------~~--~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          242 RTQHPTKGFA-------------SV--SEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             EEEETTTEEE-------------EE--EEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             cCCCccccee-------------ee--ccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            8765433221             00  0013444 599999999998 89999999999999998853

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=2.8e-29  Score=266.47  Aligned_cols=217  Identities=9%  Similarity=0.037  Sum_probs=141.1

Q ss_pred             hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEE-EEEeCC
Q 004290           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD  116 (763)
Q Consensus        38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l-~s~s~d  116 (763)
                      ...+++..+++|.+.|++++|+|||++||+|+.|+ ++|||+.+++.+... ..  ..+..+++.+.  ++.+ ++++.|
T Consensus         7 ~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~-~~--~~~~~~~~~~~--~~~~~~~~~~d   80 (355)
T 3vu4_A            7 ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ-EM--RHLSKVRMLHR--TNYVAFVTGVK   80 (355)
T ss_dssp             ------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE-EC--SCCCEEEECTT--SSEEEEECSST
T ss_pred             cccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee-ec--CCeEEEEEcCC--CCEEEEEECCc
Confidence            33455667789999999999999999999998775 789999988776554 22  24778888888  4555 677888


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCC-CCCCCCCCCCcccce
Q 004290          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG-SSCPPAGSSHQECRN  195 (763)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~  195 (763)
                      ++|++||+.++          +++..+. |...|.+++|++ +  .++.+ .|+.|++||+.+. +....          
T Consensus        81 ~~v~iWd~~~~----------~~~~~~~-~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~----------  135 (355)
T 3vu4_A           81 EVVHIWDDVKK----------QDVSRIK-VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITD----------  135 (355)
T ss_dssp             TEEEEEETTTT----------EEEEEEE-CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSC----------
T ss_pred             cEEEEEECCCC----------cEEEEEE-CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEE----------
Confidence            99999999873          3355555 677999999987 3  34444 4789999999887 32200          


Q ss_pred             EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEE--EeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccccccc
Q 004290          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV--GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (763)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~s--gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (763)
                                     ..   .....+++++   .++++  |+.||.|++||++++...........    .....|....
T Consensus       136 ---------------~~---~~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~----~~~~~p~~~~  190 (355)
T 3vu4_A          136 ---------------DI---RFGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ----QKAILGKGVL  190 (355)
T ss_dssp             ---------------CE---EEEEEEEEET---TEEEEEESSCTTCEEEEECCC----------------------CCEE
T ss_pred             ---------------ec---cCCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCcccccccccc----ccccCcccEE
Confidence                           00   0334456676   35655  68999999999997652211100000    0000000011


Q ss_pred             CCCCCccceeEEEEcCCCCEEEEEeCCCe-EEEEECCCC
Q 004290          274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEH-VYLMDVNHA  311 (763)
Q Consensus       274 ~~g~~~~~i~~v~~spdg~~l~~~s~d~~-i~iwd~~~~  311 (763)
                      ..+|.. .|++++|+|+|++|++++.|++ |++||+.++
T Consensus       191 ~~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~  228 (355)
T 3vu4_A          191 IKAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG  228 (355)
T ss_dssp             ECCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTC
T ss_pred             EEccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            145666 6999999999999999999998 999999874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.3e-29  Score=271.73  Aligned_cols=209  Identities=10%  Similarity=0.129  Sum_probs=163.2

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEcc------------------------------------
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIET------------------------------------   90 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~---~~~~~~~------------------------------------   90 (763)
                      ..+|.+++|+|+|++|++++ ++.|++||+.+++   .+..+..                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            35789999999999777664 6799999999988   5555421                                    


Q ss_pred             -----------------CCCCceEEEEEeeCCCCcEE-EEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee--cccCce
Q 004290           91 -----------------GHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRV  150 (763)
Q Consensus        91 -----------------~h~~~V~~v~~~p~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v  150 (763)
                                       +|...|.+++|+|+  +.+| ++++.|+.|++||+....+        ..+..+.  .|...|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~v  152 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD--ESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRP  152 (450)
T ss_dssp             -----------------CCCCCEEEEEECTT--SSEEEEEEGGGTEEEEEEECSSSS--------SCEEEEEEEECSSCE
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCC--CCEEEEEECCCCeEEEEECcCCCC--------ceeeeeecccCCCCc
Confidence                             23347999999999  6775 8999999999999982112        2355554  567899


Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC--CC
Q 004290          151 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST--RP  228 (763)
Q Consensus       151 ~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~--~~  228 (763)
                      .+++|+| ++.+|++++.||.|++|++.+.+....                     ......+|...|++++|+|+  ++
T Consensus       153 ~~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~---------------------~~~~~~~h~~~v~~~~~sp~~~~~  210 (450)
T 2vdu_B          153 NAISIAE-DDTTVIIADKFGDVYSIDINSIPEEKF---------------------TQEPILGHVSMLTDVHLIKDSDGH  210 (450)
T ss_dssp             EEEEECT-TSSEEEEEETTSEEEEEETTSCCCSSC---------------------CCCCSEECSSCEEEEEEEECTTSC
T ss_pred             eEEEEcC-CCCEEEEEeCCCcEEEEecCCcccccc---------------------cceeeecccCceEEEEEcCCCCCC
Confidence            9999999 668999999999999999987753210                     11122346778999999996  25


Q ss_pred             cEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004290          229 HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (763)
Q Consensus       229 ~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~  308 (763)
                      .+|++|+.|+.|++||+++++.+..+                   ..+|.. .|++++|+ ++++|++++.|+.|++||+
T Consensus       211 ~~l~s~~~d~~i~vwd~~~~~~~~~~-------------------~~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~  269 (450)
T 2vdu_B          211 QFIITSDRDEHIKISHYPQCFIVDKW-------------------LFGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDW  269 (450)
T ss_dssp             EEEEEEETTSCEEEEEESCTTCEEEE-------------------CCCCSS-CEEEEEEC-STTEEEEEESSSEEEEEET
T ss_pred             cEEEEEcCCCcEEEEECCCCceeeee-------------------ecCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEEC
Confidence            79999999999999999987543221                   024544 59999999 9999999999999999999


Q ss_pred             CCCC
Q 004290          309 NHAG  312 (763)
Q Consensus       309 ~~~~  312 (763)
                      .+++
T Consensus       270 ~~~~  273 (450)
T 2vdu_B          270 KTGK  273 (450)
T ss_dssp             TTCC
T ss_pred             CCCc
Confidence            9864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=2.5e-29  Score=265.23  Aligned_cols=161  Identities=10%  Similarity=0.092  Sum_probs=130.7

Q ss_pred             EccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCC-EEEEE
Q 004290           88 IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH-VVWSA  166 (763)
Q Consensus        88 ~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~-~l~s~  166 (763)
                      +..+|...|.+++|+|+  +.+|++++.|+.|++||+......       .....+.+|...|.+++|+| ++. +|+++
T Consensus         6 ~~~~h~~~v~~~~~s~~--~~~l~~~~~d~~v~iw~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~   75 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQAKN-------VDLLQSLRYKHPLLCCNFID-NTDLQIYVG   75 (342)
T ss_dssp             CSSCCSSCEEEEEEEGG--GTEEEEEETTSEEEEEEEETTTTE-------EEEEEEEECSSCEEEEEEEE-SSSEEEEEE
T ss_pred             cccCCCCcEEEEEEcCC--CCEEEEEcCCCeEEEEEeCCCCcc-------ccceeeeecCCceEEEEECC-CCCcEEEEE
Confidence            33689999999999999  799999999999999999863211       12455668999999999999 568 89999


Q ss_pred             eCCCcEEEEEC-CCCCCCCCCCCCCcccceEEEecCCCceeeccCCCC--CccceEEEEEeCCCCcEEEEEeCCCcEEEE
Q 004290          167 SEDGTLRQHDF-RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK--QTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (763)
Q Consensus       167 s~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iw  243 (763)
                      +.||.|++||+ .+++.                          .....  |...|.+++|+|  +.+|++++.|+.|++|
T Consensus        76 ~~dg~i~~wd~~~~~~~--------------------------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iw  127 (342)
T 1yfq_A           76 TVQGEILKVDLIGSPSF--------------------------QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVI  127 (342)
T ss_dssp             ETTSCEEEECSSSSSSE--------------------------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEE
T ss_pred             cCCCeEEEEEeccCCce--------------------------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEE
Confidence            99999999999 76541                          11123  678899999999  5799999999999999


Q ss_pred             eCCC---------CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          244 DRRM---------LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       244 d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      |+++         ++.+..+                    . +.. .|++++|+|++  |++++.|+.|++||+.+
T Consensus       128 d~~~~~~~~~~~~~~~~~~~--------------------~-~~~-~v~~~~~~~~~--l~~~~~d~~i~i~d~~~  179 (342)
T 1yfq_A          128 DPRNYGDGVIAVKNLNSNNT--------------------K-VKN-KIFTMDTNSSR--LIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             CHHHHTTBCEEEEESCSSSS--------------------S-SCC-CEEEEEECSSE--EEEEESTTEEEEEESSC
T ss_pred             cccccccccccccCCeeeEE--------------------e-eCC-ceEEEEecCCc--EEEEeCCCeEEEEECCc
Confidence            9986         4433222                    1 222 59999999987  99999999999999987

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.4e-29  Score=259.67  Aligned_cols=167  Identities=12%  Similarity=0.104  Sum_probs=131.2

Q ss_pred             eCCCC-eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEe
Q 004290           78 SYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE  156 (763)
Q Consensus        78 d~~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  156 (763)
                      |..++ +....+ .+|...|.+++| |+  +.+|++++.||.|++||+...          .....+..|...|.+++|+
T Consensus         3 d~~~~~~~~~~l-~~h~~~v~~~~~-~~--~~~l~s~~~dg~v~vw~~~~~----------~~~~~~~~~~~~v~~~~~~   68 (313)
T 3odt_A            3 DPFTGYQLSATL-KGHDQDVRDVVA-VD--DSKVASVSRDGTVRLWSKDDQ----------WLGTVVYTGQGFLNSVCYD   68 (313)
T ss_dssp             --CCCCEEEEEE-CCCSSCEEEEEE-EE--TTEEEEEETTSEEEEEEESSS----------EEEEEEEECSSCEEEEEEE
T ss_pred             CccccHHHHHHh-hCCCCCcEEEEe-cC--CCEEEEEEcCCcEEEEECCCC----------EEEEEeecCCccEEEEEEC
Confidence            44444 556666 899999999999 87  689999999999999999752          3466778899999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC
Q 004290          157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS  236 (763)
Q Consensus       157 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~  236 (763)
                      | ++.+|++++.||.|++|++......                      ..+.....|...|.+++|+   +++|++++.
T Consensus        69 ~-~~~~l~~~~~dg~i~~~~~~~~~~~----------------------~~~~~~~~~~~~i~~~~~~---~~~l~~~~~  122 (313)
T 3odt_A           69 S-EKELLLFGGKDTMINGVPLFATSGE----------------------DPLYTLIGHQGNVCSLSFQ---DGVVISGSW  122 (313)
T ss_dssp             T-TTTEEEEEETTSCEEEEETTCCTTS----------------------CC-CEECCCSSCEEEEEEE---TTEEEEEET
T ss_pred             C-CCCEEEEecCCCeEEEEEeeecCCC----------------------CcccchhhcccCEEEEEec---CCEEEEEeC
Confidence            9 6789999999999999999875421                      1122224577889999994   469999999


Q ss_pred             CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCeEEEEE
Q 004290          237 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMD  307 (763)
Q Consensus       237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s~d~~i~iwd  307 (763)
                      |+.|++||  ..+...             .+       .+|.. .|.+++|+| ++.+|++++.|+.|++||
T Consensus       123 d~~i~~~d--~~~~~~-------------~~-------~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~i~d  171 (313)
T 3odt_A          123 DKTAKVWK--EGSLVY-------------NL-------QAHNA-SVWDAKVVSFSENKFLTASADKTIKLWQ  171 (313)
T ss_dssp             TSEEEEEE--TTEEEE-------------EE-------ECCSS-CEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CCCEEEEc--CCcEEE-------------ec-------ccCCC-ceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence            99999999  222111             11       22434 599999998 999999999999999998

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=1.9e-29  Score=269.43  Aligned_cols=170  Identities=7%  Similarity=0.025  Sum_probs=136.4

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      ..|..+|++++|+|+  +++|++++.|+.|++||+....        ...+..+.+|...|.+++|+| ++.+|++++.|
T Consensus         5 ~~~~~~i~~~~~s~~--~~~l~~~~~d~~v~i~~~~~~~--------~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d   73 (372)
T 1k8k_C            5 SFLVEPISCHAWNKD--RTQIAICPNNHEVHIYEKSGNK--------WVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTD   73 (372)
T ss_dssp             ESCSSCCCEEEECTT--SSEEEEECSSSEEEEEEEETTE--------EEEEEEEECCSSCEEEEEEET-TTTEEEEEETT
T ss_pred             cccCCCeEEEEECCC--CCEEEEEeCCCEEEEEeCCCCc--------EEeeeeecCCCCcccEEEEeC-CCCEEEEEcCC
Confidence            458899999999999  7999999999999999998632        124778889999999999999 67899999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      |.|++||+.+++..                       .......+...|.+++|+|+ +++|++++.|+.|++||++...
T Consensus        74 g~i~vwd~~~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~  129 (372)
T 1k8k_C           74 RNAYVWTLKGRTWK-----------------------PTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQEN  129 (372)
T ss_dssp             SCEEEEEEETTEEE-----------------------EEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTT
T ss_pred             CeEEEEECCCCeee-----------------------eeEEeecCCCceeEEEECCC-CCEEEEEeCCCEEEEEEecCCC
Confidence            99999999776411                       11112346678999999997 6899999999999999998764


Q ss_pred             CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ....          ...+      ..+|.. .|++++|+|++++|++++.|+.|++||+...
T Consensus       130 ~~~~----------~~~~------~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  174 (372)
T 1k8k_C          130 DWWV----------CKHI------KKPIRS-TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  174 (372)
T ss_dssp             TEEE----------EEEE------CTTCCS-CEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             ccee----------eeee------ecccCC-CeeEEEEcCCCCEEEEEcCCCCEEEEEcccc
Confidence            2110          0000      022333 5999999999999999999999999999763

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=2.4e-29  Score=259.98  Aligned_cols=242  Identities=15%  Similarity=0.178  Sum_probs=191.2

Q ss_pred             CcccccccccchhhhhccccceeeccccCceEEEEeCCC--CCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEE
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFC   98 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~--g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~   98 (763)
                      +...++.+++|+......+++.+|.+|.+.|++++|+|+  +++||||+.|++|+|||+.+++  .+..+ .+|...|.+
T Consensus        26 s~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v~~  104 (297)
T 2pm7_B           26 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH-AVHSASVNS  104 (297)
T ss_dssp             EEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE-CCCSSCEEE
T ss_pred             EEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe-ecCCCceeE
Confidence            456789999998554556788999999999999999874  8999999999999999998874  45556 689999999


Q ss_pred             EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC------------CCEEEEE
Q 004290           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN------------PHVVWSA  166 (763)
Q Consensus        99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~------------~~~l~s~  166 (763)
                      ++|+|+..+.+|++++.|++|++||++....        .....+.+|...|.+++|+|+.            +.+|++|
T Consensus       105 v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~--------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sg  176 (297)
T 2pm7_B          105 VQWAPHEYGPMLLVASSDGKVSVVEFKENGT--------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG  176 (297)
T ss_dssp             EEECCGGGCSEEEEEETTSEEEEEEBCSSSC--------BCCEEEECCSSCEEEEEECCCC------------CCEEEEE
T ss_pred             EEeCcCCCCcEEEEEECCCcEEEEEecCCCc--------eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEE
Confidence            9999973358999999999999999986321        1135677899999999999952            4699999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC--CcEEEEEeCCCcEEEEe
Q 004290          167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYD  244 (763)
Q Consensus       167 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~--~~~l~sgs~Dg~i~iwd  244 (763)
                      +.|++|++||+++.+..                     ........+|...|.+++|+|+.  +.+|++++.|++|+|||
T Consensus       177 s~D~~v~lwd~~~~~~~---------------------~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd  235 (297)
T 2pm7_B          177 GADNLVKIWKYNSDAQT---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT  235 (297)
T ss_dssp             ETTSCEEEEEEETTTTE---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             cCCCcEEEEEEcCCCce---------------------EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence            99999999999875411                     00112234678899999999974  47999999999999999


Q ss_pred             CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      ++......           ...    .+...+|.. .|.+++|+|+|++|++++.|+.|++|+...
T Consensus       236 ~~~~~~~~-----------~~~----~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          236 QDNEQGPW-----------KKT----LLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             ESSTTSCC-----------EEE----ESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             eCCCCCcc-----------cee----eeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            98642100           000    000123433 699999999999999999999999999875

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=6.5e-30  Score=272.23  Aligned_cols=258  Identities=13%  Similarity=0.129  Sum_probs=185.4

Q ss_pred             ccccccchhhhhccccceeecc-----ccCceEEEEeCCC----CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceE
Q 004290           27 NHSLQMHSSLVRRLSQERELEG-----HQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF   97 (763)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~g-----H~~~V~~l~fsp~----g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~   97 (763)
                      +..+++|+.  .+.+.+..++.     |...|++++|+|+    |.+|++|+.|+.|++||+.+++.+..+ .+|...|.
T Consensus        43 ~~~v~vw~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~  119 (366)
T 3k26_A           43 SNRVTLYEC--HSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAIN  119 (366)
T ss_dssp             TTEEEEEEE--CGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEE
T ss_pred             CCEEEEEEc--CCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee-cCCCCcEE
Confidence            457888884  33444555544     5678999999998    679999999999999999999999988 78999999


Q ss_pred             EEEEee-CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceee---ecccCceeEEEEecCCCCEEEEEeCCCcEE
Q 004290           98 CTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY---QCHTRRVKKLAVEVGNPHVVWSASEDGTLR  173 (763)
Q Consensus        98 ~v~~~p-~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~  173 (763)
                      +++|+| +  +.+|++++.||.|++||+..+          ..+..+   .+|...|.+++|+| ++.+|++++.||.|+
T Consensus       120 ~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~  186 (366)
T 3k26_A          120 ELKFHPRD--PNLLLSVSKDHALRLWNIQTD----------TLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLK  186 (366)
T ss_dssp             EEEECSSC--TTEEEEEETTSCEEEEETTTT----------EEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred             EEEECCCC--CCEEEEEeCCCeEEEEEeecC----------eEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEE
Confidence            999999 6  799999999999999999863          234455   68999999999999 668999999999999


Q ss_pred             EEECCCCCCCCCCCC---CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 004290          174 QHDFRQGSSCPPAGS---SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (763)
Q Consensus       174 iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~  250 (763)
                      +||+++++.......   .........................|...|.+++|+   +++|++++.|+.|++||++++..
T Consensus       187 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~  263 (366)
T 3k26_A          187 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMED  263 (366)
T ss_dssp             EEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTC
T ss_pred             EEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccc
Confidence            999987643200000   000000000000000001112223477889999998   35999999999999999988754


Q ss_pred             CcccCCCCC-CCCcccccccccccCCCCCccceeEEEEcCC--CCEEEEEeCCCeEEEEECCCC
Q 004290          251 LTSCQKRMS-PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN--GEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       251 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd--g~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ......... ....+..+       .+|.. .|++++|+|+  +++|++++.||.|++||+.++
T Consensus       264 ~~~~~~~~~~~~~~~~~~-------~~~~~-~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          264 DIDKIKPSESNVTILGRF-------DYSQC-DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             CGGGCCTTCCCEEEEEEE-------ECSSC-CSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred             cccccccCCcchheeccc-------cccCC-cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence            221111100 00011111       23444 5999999999  999999999999999999874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=9e-30  Score=272.85  Aligned_cols=246  Identities=11%  Similarity=0.103  Sum_probs=182.5

Q ss_pred             CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEccCCCCceEEE
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCT   99 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~---~~~~~~~~h~~~V~~v   99 (763)
                      ....+..+++|+......+++..+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++   ....+ .+|...|.++
T Consensus        28 ~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~  106 (377)
T 3dwl_C           28 TTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFV  106 (377)
T ss_dssp             CCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEE
T ss_pred             EecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEE
Confidence            3456789999996554447888999999999999999999999999999999999999877   55566 6899999999


Q ss_pred             EEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeec-ccCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004290          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (763)
Q Consensus       100 ~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~  178 (763)
                      +|+|+  +.+|++++.|+.|++||++....       ......+.. |...|.+++|+| ++.+|++++.|+.|++||++
T Consensus       107 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          107 RWSPN--EDKFAVGSGARVISVCYFEQEND-------WWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             ECCTT--SSCCEEEESSSCEEECCC------------CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEEC
T ss_pred             EECCC--CCEEEEEecCCeEEEEEECCccc-------ceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEE
Confidence            99998  79999999999999999987431       123566777 999999999999 66899999999999999997


Q ss_pred             CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC----Cccc
Q 004290          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP----LTSC  254 (763)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~----~~~~  254 (763)
                      ............       +.........+... .|...|.+++|+|+ +++|++++.|+.|++||+++++.    +..+
T Consensus       177 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~v~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  247 (377)
T 3dwl_C          177 VRDVDAKPEASV-------WGSRLPFNTVCAEY-PSGGWVHAVGFSPS-GNALAYAGHDSSVTIAYPSAPEQPPRALITV  247 (377)
T ss_dssp             CSSCC-CCCSCS-------SCSCCCEEEEEECC-CCSSSEEEEEECTT-SSCEEEEETTTEEC-CEECSTTSCEEECCCE
T ss_pred             ecccCCCccccc-------cccccchhhhhhcc-cCCceEEEEEECCC-CCEEEEEeCCCcEEEEECCCCCCcceeeEee
Confidence            654221110000       00000001122233 67889999999997 68999999999999999998764    2211


Q ss_pred             CCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                                          .+|.. .|++++|+|++++|++++.++.+ +|+...
T Consensus       248 --------------------~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          248 --------------------KLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             --------------------ECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred             --------------------cCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence                                23444 59999999999999888766666 776654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=262.89  Aligned_cols=177  Identities=15%  Similarity=0.157  Sum_probs=138.6

Q ss_pred             EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEE
Q 004290           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (763)
Q Consensus        84 ~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  163 (763)
                      ....+ .+|...|++++|+|+  +.+|++++.||.|++||+.++          ..+..+.+|...|.+++|+| ++.+|
T Consensus        24 ~~~~l-~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l   89 (369)
T 3zwl_B           24 KAIKL-TGHERPLTQVKYNKE--GDLLFSCSKDSSASVWYSLNG----------ERLGTLDGHTGTIWSIDVDC-FTKYC   89 (369)
T ss_dssp             EEEEE-ECCSSCEEEEEECTT--SCEEEEEESSSCEEEEETTTC----------CEEEEECCCSSCEEEEEECT-TSSEE
T ss_pred             ccEEE-EEeeceEEEEEEcCC--CCEEEEEeCCCEEEEEeCCCc----------hhhhhhhhcCCcEEEEEEcC-CCCEE
Confidence            34445 799999999999999  799999999999999999863          44778889999999999999 67899


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC-----C
Q 004290          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----A  238 (763)
Q Consensus       164 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D-----g  238 (763)
                      ++++.||.|++||+.+++..           ..+               .+...+.+++|+|+ +.+|++++.+     +
T Consensus        90 ~s~~~dg~i~iwd~~~~~~~-----------~~~---------------~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g  142 (369)
T 3zwl_B           90 VTGSADYSIKLWDVSNGQCV-----------ATW---------------KSPVPVKRVEFSPC-GNYFLAILDNVMKNPG  142 (369)
T ss_dssp             EEEETTTEEEEEETTTCCEE-----------EEE---------------ECSSCEEEEEECTT-SSEEEEEECCBTTBCC
T ss_pred             EEEeCCCeEEEEECCCCcEE-----------EEe---------------ecCCCeEEEEEccC-CCEEEEecCCccCCCC
Confidence            99999999999999887522           111               13457999999997 7899999999     9


Q ss_pred             cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC-ccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS-SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      .|++||++.......+.....  .....     +  .++. ...+++++|+|++++|++++.|+.|++||+.+
T Consensus       143 ~i~~~d~~~~~~~~~~~~~~~--~~~~~-----~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  206 (369)
T 3zwl_B          143 SINIYEIERDSATHELTKVSE--EPIHK-----I--ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN  206 (369)
T ss_dssp             EEEEEEEEECTTTCCEEEECS--SCSEE-----E--ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             EEEEEEecCCccceeeccccc--ceeee-----c--cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence            999999987764433211100  00000     0  1111 11599999999999999999999999999876

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.8e-30  Score=299.78  Aligned_cols=130  Identities=18%  Similarity=0.268  Sum_probs=109.0

Q ss_pred             ceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~--~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      +..+++|.+.|++++|+|+|++|++|+.||.|+|||+.  +++.+..+ .+|...|.+++|+|+.++++|++|+.||.|+
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            46789999999999999999999999999999999998  45667777 7999999999999874468999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC-CCEEEEEeCCCcEEEEECCCCC
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGS  181 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~~~~~  181 (763)
                      +||+..+.        ......+.+|...|.+++|+|+. +.++++++.||.|++||++...
T Consensus        81 vwd~~~~~--------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~  134 (753)
T 3jro_A           81 IWKEENGR--------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG  134 (753)
T ss_dssp             EEEEETTE--------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred             EEECCCCc--------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence            99998632        12467778899999999999942 7899999999999999998764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=5.5e-29  Score=273.23  Aligned_cols=204  Identities=15%  Similarity=0.202  Sum_probs=134.9

Q ss_pred             CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCC-CCCCCCCCceeeeccc------------CceeEEEEec
Q 004290           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG-LDDNAITPSALYQCHT------------RRVKKLAVEV  157 (763)
Q Consensus        91 ~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~h~------------~~v~~l~~sp  157 (763)
                      .+.+.|.+++|+|+  +.+|++|+.||.|+|||+....... .......+...+.+|.            ..|.+++|+|
T Consensus        26 ~~~~~V~~v~~s~~--g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           26 AEADIISTVEFNHS--GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             CGGGSEEEEEECSS--SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             cccCcEEEEEECCC--CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            46789999999999  7999999999999999998643100 0011123467788898            8899999999


Q ss_pred             CCC-CEEEEEeCCCcEEEEECCCCCCCCCCCC--CCcc-----------cceEE--EecCCCceeeccCCCCCccceEEE
Q 004290          158 GNP-HVVWSASEDGTLRQHDFRQGSSCPPAGS--SHQE-----------CRNIL--LDLRCGAKRSLADPPKQTLSLKSC  221 (763)
Q Consensus       158 ~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~-----------~~~~~--~~~~~~~~~~~~~~~~~~~~v~~i  221 (763)
                      ++. .+|++++.|++|++||+...........  .+..           ....+  ...............+|...|.++
T Consensus       104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence            533 6899999999999999976432100000  0000           00000  000000000011134688899999


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEEeCCCCC-CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC-CEEEEEeC
Q 004290          222 DISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYS  299 (763)
Q Consensus       222 ~~~p~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg-~~l~~~s~  299 (763)
                      +|+|+ +++|++| .|+.|++||+++.. .+..+.           ..+..+  .+|.. .|++++|+|++ .+|++++.
T Consensus       184 ~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~-----------~~~~~~--~~~~~-~v~~~~~~p~~~~~l~s~~~  247 (447)
T 3dw8_B          184 SINSD-YETYLSA-DDLRINLWHLEITDRSFNIVD-----------IKPANM--EELTE-VITAAEFHPNSCNTFVYSSS  247 (447)
T ss_dssp             EECTT-SSEEEEE-CSSEEEEEETTEEEEEEEEEE-----------CCCSSG--GGCCC-CEEEEEECSSCTTEEEEEET
T ss_pred             EEcCC-CCEEEEe-CCCeEEEEECCCCCceeeeee-----------cccccc--cccCc-ceEEEEECCCCCcEEEEEeC
Confidence            99997 7899998 89999999998432 111100           000011  23544 59999999998 99999999


Q ss_pred             CCeEEEEECCCCC
Q 004290          300 GEHVYLMDVNHAG  312 (763)
Q Consensus       300 d~~i~iwd~~~~~  312 (763)
                      |+.|++||+.++.
T Consensus       248 dg~i~iwd~~~~~  260 (447)
T 3dw8_B          248 KGTIRLCDMRASA  260 (447)
T ss_dssp             TSCEEEEETTTCS
T ss_pred             CCeEEEEECcCCc
Confidence            9999999998853

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.6e-28  Score=246.99  Aligned_cols=220  Identities=16%  Similarity=0.177  Sum_probs=125.9

Q ss_pred             hccccceeeccccCc----eEEEEeCCCC-C--EEEEEeCCCcEEEEeCCCC---eEEEEEccCCCCceEEEEEeeCCCC
Q 004290           38 RRLSQERELEGHQGC----VNAISWNSKG-S--LLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFVPETSD  107 (763)
Q Consensus        38 ~~~~~~~~l~gH~~~----V~~l~fsp~g-~--~Lasgs~D~~v~iWd~~~~---~~~~~~~~~h~~~V~~v~~~p~~~~  107 (763)
                      ..++++.+|+.-.+.    |.++.|-..| +  -++++++ ..|++|+..++   +++++. .+|..+|..+.|.|+. .
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~   99 (356)
T 2w18_A           23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTW-HFAEVPVLQIVPVPDV-Y   99 (356)
T ss_dssp             -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEE-ECCSSCEEEECCCTTC-C
T ss_pred             ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEE-eccCceeEEEEEcCcc-c
Confidence            345666777655443    4556665433 2  4566776 59999999998   889998 7999999999999985 4


Q ss_pred             cEEEEEeCCCcE-EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe--CCCcEEEEECCC-CCCC
Q 004290          108 ELVVSGAGDAEV-RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQ-GSSC  183 (763)
Q Consensus       108 ~~l~s~s~dg~I-~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s--~dg~i~iwd~~~-~~~~  183 (763)
                      +++..+-..=.+ .++-+.....    ...........+|...|..+   + +++++.+++  .|+.|++|++.. ++  
T Consensus       100 ~~~~~~~~~~~~~~v~sla~spd----~~~~~~~l~s~g~~~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~--  169 (356)
T 2w18_A          100 NLVCVALGNLEIREIRALFCSSD----DESEKQVLLKSGNIKAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGG--  169 (356)
T ss_dssp             SCEEEEECSSSEEEEEEECC----------CCEEEEEEEEEEEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSC--
T ss_pred             ceeeeeeccccccceEEEEECCC----ccccccEEEeCCCeEEEEec---C-CCcEEEecccCCCCcEEEEEECCCCc--
Confidence            444443321111 1111111000    00000111112333333332   2 444444432  466677776643 22  


Q ss_pred             CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeC--CCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC
Q 004290          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (763)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p--~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (763)
                                             .+.....|...+..++|+|  .++.+|++|+.|++|+|||+.+++.+.++...    
T Consensus       170 -----------------------~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~----  222 (356)
T 2w18_A          170 -----------------------GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID----  222 (356)
T ss_dssp             -----------------------EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC----
T ss_pred             -----------------------eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC----
Confidence                                   1111223555667777777  23689999999999999999998765544210    


Q ss_pred             CcccccccccccCCCCCccceeEEEEcCCCCEEE------------EEeCCCeEEEEECCCC
Q 004290          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL------------LSYSGEHVYLMDVNHA  311 (763)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~------------~~s~d~~i~iwd~~~~  311 (763)
                                   +.+ ...+.+++|+|+|.+++            +|+.|++|++||..++
T Consensus       223 -------------~~~-v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg  270 (356)
T 2w18_A          223 -------------DSY-QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT  270 (356)
T ss_dssp             -------------C----CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred             -------------Ccc-eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence                         001 12488889999999874            4666788888887774

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=6.3e-28  Score=263.70  Aligned_cols=211  Identities=12%  Similarity=0.060  Sum_probs=163.0

Q ss_pred             ccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc----cCCCCceEEEEEeeCCCCcEEEEEe
Q 004290           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGA  114 (763)
Q Consensus        39 ~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~----~~h~~~V~~v~~~p~~~~~~l~s~s  114 (763)
                      +++.+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++.+..+.    .+|...|.+++|+|+  +.++++++
T Consensus       112 ~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~  188 (433)
T 3bws_A          112 THRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH--NELWVSQM  188 (433)
T ss_dssp             SEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG--TEEEEEEG
T ss_pred             cceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC--CEEEEEEC
Confidence            345666666554 46699999988888888899999999999998876431    478889999999998  79999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      .|+.|++||+.++          ..+..+..|...+.+++|+|++..++++++.|+.|++||+++++..           
T Consensus       189 ~d~~v~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~-----------  247 (433)
T 3bws_A          189 QANAVHVFDLKTL----------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI-----------  247 (433)
T ss_dssp             GGTEEEEEETTTC----------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE-----------
T ss_pred             CCCEEEEEECCCc----------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE-----------
Confidence            9999999999863          3466777889999999999965445566668999999999876421           


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe--------CCCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs--------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (763)
                         ..           .. ....+.+++|+|+ +++|++++        .|+.|++||+++++.+..+            
T Consensus       248 ---~~-----------~~-~~~~~~~~~~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~------------  299 (433)
T 3bws_A          248 ---RK-----------TD-KIGLPRGLLLSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI------------  299 (433)
T ss_dssp             ---EE-----------CC-CCSEEEEEEECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE------------
T ss_pred             ---EE-----------ec-CCCCceEEEEcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEeec------------
Confidence               11           11 1234889999997 67888887        5899999999876432211            


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCeEEEEECCCC
Q 004290          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVL-LSYSGEHVYLMDVNHA  311 (763)
Q Consensus       267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~-~~s~d~~i~iwd~~~~  311 (763)
                               .+.. .+.+++|+|++++|+ +++.|+.|++||+.++
T Consensus       300 ---------~~~~-~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~  335 (433)
T 3bws_A          300 ---------GPPG-NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK  335 (433)
T ss_dssp             ---------EEEE-CEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred             ---------cCCC-CcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence                     1122 488999999998665 4577999999999874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=3.4e-28  Score=265.38  Aligned_cols=219  Identities=17%  Similarity=0.275  Sum_probs=174.7

Q ss_pred             eeeccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCC----------CeEEEEEccCCCCceEEEEEeeCCCCc-EEE
Q 004290           44 RELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS----------RKLLHSIETGHSANVFCTKFVPETSDE-LVV  111 (763)
Q Consensus        44 ~~l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~----------~~~~~~~~~~h~~~V~~v~~~p~~~~~-~l~  111 (763)
                      ..+.+|.+.|++++|+|+ +.+||+|+.||.|+|||+.+          ...+..+ .+|...|++++|+|+  +. +|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~--~~~~l~  198 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPN--LNGYLL  198 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTT--STTEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCC--CCCeEE
Confidence            445679999999999997 78999999999999999986          5666777 689999999999999  45 999


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004290          112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  191 (763)
Q Consensus       112 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  191 (763)
                      +|+.||.|++||+.......   ....+...+.+|...|.+++|+|.++.+|++++.||.|++||+++....        
T Consensus       199 s~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~--------  267 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEH---RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS--------  267 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGG---GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--------
T ss_pred             EEeCCCeEEEEeCCCCCCCC---ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--------
Confidence            99999999999998632110   0012245677899999999999977899999999999999999976311        


Q ss_pred             ccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC-CCcccCCCCCCCCcccccccc
Q 004290          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPM  270 (763)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~  270 (763)
                                    ..+.....|...|++++|+|++..+|++|+.||.|++||+++.. .+..+                
T Consensus       268 --------------~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~----------------  317 (430)
T 2xyi_A          268 --------------KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF----------------  317 (430)
T ss_dssp             --------------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE----------------
T ss_pred             --------------cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe----------------
Confidence                          00111124667899999999866689999999999999999743 22111                


Q ss_pred             cccCCCCCccceeEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 004290          271 HLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       271 ~~~~~g~~~~~i~~v~~spdg~-~l~~~s~d~~i~iwd~~~~  311 (763)
                          .+|.. .|++++|+|+++ +|++++.|+.|++||+...
T Consensus       318 ----~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          318 ----ESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             ----ECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred             ----ecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence                23444 699999999995 5888999999999999873

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=1.5e-28  Score=256.32  Aligned_cols=241  Identities=15%  Similarity=0.159  Sum_probs=188.6

Q ss_pred             CcccccccccchhhhhccccceeeccccCceEEEEeCC--CCCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEE
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFC   98 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp--~g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~   98 (763)
                      +...++.+++|+....+..++..|++|.+.|++++|+|  ++++||||+.|++|+|||+.++.  .+..+ .+|...|.+
T Consensus        30 sgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~  108 (316)
T 3bg1_A           30 TCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH-AGHDSSVNS  108 (316)
T ss_dssp             EEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE-CCCSSCCCE
T ss_pred             EEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc-cCCCCceEE
Confidence            45678999999854444456788999999999999986  48999999999999999999873  56666 789999999


Q ss_pred             EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC----------------CCE
Q 004290           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN----------------PHV  162 (763)
Q Consensus        99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~----------------~~~  162 (763)
                      ++|+|+..+.+|++|+.|++|++||++....       ......+.+|...|.+++|+|+.                +.+
T Consensus       109 v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (316)
T 3bg1_A          109 VCWAPHDYGLILACGSSDGAISLLTYTGEGQ-------WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKR  181 (316)
T ss_dssp             EEECCTTTCSCEEEECSSSCEEEEEECSSSC-------EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCB
T ss_pred             EEECCCCCCcEEEEEcCCCCEEEEecCCCCC-------cceeeeeccccCCcceEEEccccCCccccccccccCccccce
Confidence            9999984468999999999999999985321       11234567899999999999952                368


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC---CcEEEEEeCCCc
Q 004290          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---PHLLLVGGSDAF  239 (763)
Q Consensus       163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~---~~~l~sgs~Dg~  239 (763)
                      |++++.|++|++||++....                      ...+....+|...|.+++|+|++   +.+|++++.|++
T Consensus       182 l~sgs~D~~v~lWd~~~~~~----------------------~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~  239 (316)
T 3bg1_A          182 FASGGCDNLIKLWKEEEDGQ----------------------WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR  239 (316)
T ss_dssp             EECCBTTSBCCEEEECTTSC----------------------EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred             EEEecCCCeEEEEEeCCCCc----------------------cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence            99999999999999865421                      01223345678899999999974   379999999999


Q ss_pred             EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      |++||+++.....         .....     +  .+|.. .|.+++|+|++++|++++.|+.|++|+...
T Consensus       240 v~iw~~~~~~~~~---------~~~~~-----~--~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          240 VFIWTCDDASSNT---------WSPKL-----L--HKFND-VVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEEECSSTTCCC---------CBCCE-----E--EECSS-CEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             EEEEEccCccccc---------hhhhh-----h--hcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            9999997632100         00000     0  12333 699999999999999999999999999864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.9e-28  Score=257.50  Aligned_cols=198  Identities=14%  Similarity=0.126  Sum_probs=150.4

Q ss_pred             EeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004290           57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA  136 (763)
Q Consensus        57 ~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~  136 (763)
                      .+.+++.+|++|+.||+|++||+.+++.+..+.   ...|.++.|+|.     +++++.|++|++|+..... ...+...
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~~~-~~~~~~~  113 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA-----IISRGPCNRLLLLYPGNQI-TILDSKT  113 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS-----EEEECSTTEEEEEETTTEE-EEEETTT
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc-----eEEecCCCeEEEEEccCce-EEeecCC
Confidence            445688999999999999999999999888873   567888888875     9999999999999877310 0000001


Q ss_pred             CCCceeee-cccCceeEEEEec--CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCC
Q 004290          137 ITPSALYQ-CHTRRVKKLAVEV--GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK  213 (763)
Q Consensus       137 ~~~~~~~~-~h~~~v~~l~~sp--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (763)
                      ...+..+. +|.+.|.+++|+|  + +.+|++++.||+|++||+++++..            ...            ...
T Consensus       114 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~------------~~~------------~~~  168 (343)
T 3lrv_A          114 NKVLREIEVDSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQY------------IVH------------SAK  168 (343)
T ss_dssp             CCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEE------------EEE------------CCC
T ss_pred             cceeEEeecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEE------------EEE------------ecC
Confidence            12233332 5678999999999  5 478999999999999999887521            000            112


Q ss_pred             CccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC-cccCCCCCCCCcccccccccccCCC-CCccceeEEEEcCCC
Q 004290          214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL-TSCQKRMSPPPCVNYFCPMHLSEHG-RSSLHLTHVTFSPNG  291 (763)
Q Consensus       214 ~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~v~~spdg  291 (763)
                      +...+.+++|+|+ +.+|++|+.|+.|++||+++++.+ ..+                    .+ |.. +|++++|+|+|
T Consensus       169 ~~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~~~~~~~~--------------------~~~h~~-~v~~l~fs~~g  226 (343)
T 3lrv_A          169 SDVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPDQASSRF--------------------PVDEEA-KIKEVKFADNG  226 (343)
T ss_dssp             SSCCCCEEEECTT-SCEEEEECTTSCEEEEESSCTTSCCEEC--------------------CCCTTS-CEEEEEECTTS
T ss_pred             CCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCCCCccEE--------------------eccCCC-CEEEEEEeCCC
Confidence            3446899999997 789999999999999999987643 222                    22 444 69999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCC
Q 004290          292 EEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       292 ~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .+|++++ |+.|++||++++
T Consensus       227 ~~l~s~~-~~~v~iwd~~~~  245 (343)
T 3lrv_A          227 YWMVVEC-DQTVVCFDLRKD  245 (343)
T ss_dssp             SEEEEEE-SSBEEEEETTSS
T ss_pred             CEEEEEe-CCeEEEEEcCCC
Confidence            9999999 559999999884

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=1.7e-27  Score=260.36  Aligned_cols=157  Identities=16%  Similarity=0.278  Sum_probs=125.7

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      .+|...|.++.|  +  +.+|++|+.||.|++||+.++          +....+.+|...|.+++|   ++.+|++|+.|
T Consensus       130 ~~~~~~v~~~~~--d--~~~l~~g~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~---~~~~l~sg~~d  192 (435)
T 1p22_A          130 SETSKGVYCLQY--D--DQKIVSGLRDNTIKIWDKNTL----------ECKRILTGHTGSVLCLQY---DERVIITGSSD  192 (435)
T ss_dssp             CSSCCCEEEEEC--C--SSEEEEEESSSCEEEEESSSC----------CEEEEECCCSSCEEEEEC---CSSEEEEEETT
T ss_pred             cCCCCcEEEEEE--C--CCEEEEEeCCCeEEEEeCCCC----------eEEEEEcCCCCcEEEEEE---CCCEEEEEcCC
Confidence            467778999887  4  689999999999999999863          447788899999999998   45799999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      |.|++||+.+++..                         .....|...|.+++|++   .+|++|+.|+.|++||++++.
T Consensus       193 g~i~vwd~~~~~~~-------------------------~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~  244 (435)
T 1p22_A          193 STVRVWDVNTGEML-------------------------NTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPT  244 (435)
T ss_dssp             SCEEEEESSSCCEE-------------------------EEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSS
T ss_pred             CeEEEEECCCCcEE-------------------------EEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCC
Confidence            99999999887521                         12235677899999975   499999999999999998765


Q ss_pred             CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .....          ..       ..+|.. .|++++|  ++++|++++.|+.|++||+.++
T Consensus       245 ~~~~~----------~~-------~~~~~~-~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~  286 (435)
T 1p22_A          245 DITLR----------RV-------LVGHRA-AVNVVDF--DDKYIVSASGDRTIKVWNTSTC  286 (435)
T ss_dssp             CCEEE----------EE-------ECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTTC
T ss_pred             Cceee----------eE-------ecCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCcC
Confidence            33100          00       133544 5999999  7889999999999999998874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=2.7e-27  Score=259.69  Aligned_cols=218  Identities=20%  Similarity=0.272  Sum_probs=181.3

Q ss_pred             cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p  103 (763)
                      ...++.+++|+  ..+.+++..+.+|.+.|.+++|+  +++|++|+.|++|++||+.+++.+..+ .+|...|.++.|+ 
T Consensus       135 g~~dg~i~vwd--~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~-  208 (445)
T 2ovr_B          135 GSDDNTLKVWS--AVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH-  208 (445)
T ss_dssp             EETTSCEEEEE--TTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE-
T ss_pred             EECCCcEEEEE--CCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEec-
Confidence            44578899998  56678889999999999999997  679999999999999999999999998 7999999999996 


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (763)
Q Consensus       104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~  183 (763)
                         +..|++|+.|+.|++||+.++          .++..+.+|...|.+++|   ++.++++++.||.|++||+++++. 
T Consensus       209 ---~~~l~s~s~dg~i~~wd~~~~----------~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~-  271 (445)
T 2ovr_B          209 ---EKRVVSGSRDATLRVWDIETG----------QCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETC-  271 (445)
T ss_dssp             ---TTEEEEEETTSEEEEEESSSC----------CEEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEE-
T ss_pred             ---CCEEEEEeCCCEEEEEECCCC----------cEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcE-
Confidence               358999999999999999863          347788899999999999   457899999999999999987642 


Q ss_pred             CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004290          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (763)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (763)
                                              +....+|...|.+++|  + +.++++|+.|+.|++||+++++.+..+         
T Consensus       272 ------------------------~~~~~~~~~~v~~~~~--~-~~~l~~~~~d~~i~i~d~~~~~~~~~~---------  315 (445)
T 2ovr_B          272 ------------------------LHTLQGHTNRVYSLQF--D-GIHVVSGSLDTSIRVWDVETGNCIHTL---------  315 (445)
T ss_dssp             ------------------------EEEECCCSSCEEEEEE--C-SSEEEEEETTSCEEEEETTTCCEEEEE---------
T ss_pred             ------------------------eEEecCCCCceEEEEE--C-CCEEEEEeCCCeEEEEECCCCCEEEEE---------
Confidence                                    1122356778999999  3 579999999999999999987644332         


Q ss_pred             ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCcc
Q 004290          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  314 (763)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~  314 (763)
                                 .+|.. .+.++.+  ++.+|++++.|+.|++||+.++...
T Consensus       316 -----------~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~  352 (445)
T 2ovr_B          316 -----------TGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL  352 (445)
T ss_dssp             -----------CCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE
T ss_pred             -----------cCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEE
Confidence                       23433 4777776  5679999999999999999886543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=5.8e-27  Score=252.27  Aligned_cols=185  Identities=16%  Similarity=0.176  Sum_probs=140.6

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEE-EEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004290           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (763)
Q Consensus        63 ~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  141 (763)
                      .++++++.|+.|++||+.+++.+..+ ..|. .+.+++|+|+  +.+| ++++.|+.|++||+.++          +.+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~-~~~~-~~~~~~~s~d--g~~l~~~~~~d~~i~v~d~~~~----------~~~~   68 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATI-PVGS-NPMGAVISPD--GTKVYVANAHSNDVSIIDTATN----------NVIA   68 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEE-ECSS-SEEEEEECTT--SSEEEEEEGGGTEEEEEETTTT----------EEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEe-ecCC-CcceEEECCC--CCEEEEECCCCCeEEEEECCCC----------eEEE
Confidence            46889999999999999999999888 5554 5899999999  6665 77779999999999863          3355


Q ss_pred             eeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEE
Q 004290          142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  221 (763)
Q Consensus       142 ~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  221 (763)
                      .+..+ ..+.+++|+|++..++++++.++.|++||+.+++..           . ...              +...+.++
T Consensus        69 ~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~-----------~-~~~--------------~~~~~~~~  121 (391)
T 1l0q_A           69 TVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA-----------G-TVK--------------TGKSPLGL  121 (391)
T ss_dssp             EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----------E-EEE--------------CSSSEEEE
T ss_pred             EEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEE-----------E-EEe--------------CCCCcceE
Confidence            55544 489999999955445566667899999999876521           0 000              12357899


Q ss_pred             EEeCCCCcEE-EEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEE-EEEeC
Q 004290          222 DISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV-LLSYS  299 (763)
Q Consensus       222 ~~~p~~~~~l-~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l-~~~s~  299 (763)
                      +|+|+ +++| ++++.|+.|++||+++++.+..+                    ..+.  .+..++|+|++++| ++++.
T Consensus       122 ~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~--~~~~~~~~~dg~~l~~~~~~  178 (391)
T 1l0q_A          122 ALSPD-GKKLYVTNNGDKTVSVINTVTKAVINTV--------------------SVGR--SPKGIAVTPDGTKVYVANFD  178 (391)
T ss_dssp             EECTT-SSEEEEEETTTTEEEEEETTTTEEEEEE--------------------ECCS--SEEEEEECTTSSEEEEEETT
T ss_pred             EECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEE--------------------ecCC--CcceEEECCCCCEEEEEeCC
Confidence            99998 4555 78888999999999876543222                    1122  37899999999988 45667


Q ss_pred             CCeEEEEECCCC
Q 004290          300 GEHVYLMDVNHA  311 (763)
Q Consensus       300 d~~i~iwd~~~~  311 (763)
                      ++.|++||+.++
T Consensus       179 ~~~v~~~d~~~~  190 (391)
T 1l0q_A          179 SMSISVIDTVTN  190 (391)
T ss_dssp             TTEEEEEETTTT
T ss_pred             CCEEEEEECCCC
Confidence            999999999873

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=2.1e-27  Score=252.90  Aligned_cols=174  Identities=15%  Similarity=0.184  Sum_probs=136.4

Q ss_pred             EeCCCCeEEEEEccCCCCceEEEEEeeCC-CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEE
Q 004290           77 WSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV  155 (763)
Q Consensus        77 Wd~~~~~~~~~~~~~h~~~V~~v~~~p~~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  155 (763)
                      |+....+.+..+ .+|...|++++|+|+. ++.+|++|+.||.|++||+.....        .....+.+|...|.+++|
T Consensus        24 ~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~--------~~~~~~~~h~~~v~~~~~   94 (368)
T 3mmy_A           24 DNHNPMKDIEVT-SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ--------TIPKAQQMHTGPVLDVCW   94 (368)
T ss_dssp             CSSCTTCCEECS-SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--------EEEEEEEECSSCEEEEEE
T ss_pred             CCCCCcceeEec-cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--------eeEEEeccccCCEEEEEE
Confidence            445555666666 7999999999999981 138999999999999999986221        223678889999999999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEE--eCCCCcEEEE
Q 004290          156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI--SSTRPHLLLV  233 (763)
Q Consensus       156 sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~p~~~~~l~s  233 (763)
                      +| ++.+|++++.||.|++||+++++..            .              ...|...|.+++|  +|+ +.+|++
T Consensus        95 ~~-~~~~l~s~~~dg~v~iwd~~~~~~~------------~--------------~~~~~~~v~~~~~~~~~~-~~~l~~  146 (368)
T 3mmy_A           95 SD-DGSKVFTASCDKTAKMWDLSSNQAI------------Q--------------IAQHDAPVKTIHWIKAPN-YSCVMT  146 (368)
T ss_dssp             CT-TSSEEEEEETTSEEEEEETTTTEEE------------E--------------EEECSSCEEEEEEEECSS-CEEEEE
T ss_pred             Cc-CCCEEEEEcCCCcEEEEEcCCCCce------------e--------------eccccCceEEEEEEeCCC-CCEEEE
Confidence            99 6789999999999999999876521            0              1136678999999  786 689999


Q ss_pred             EeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          234 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       234 gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ++.|+.|++||+++++.+..+.                    .+.  .+.++.+.+  ..+++++.++.+++|++...
T Consensus       147 ~~~dg~i~vwd~~~~~~~~~~~--------------------~~~--~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~  200 (368)
T 3mmy_A          147 GSWDKTLKFWDTRSSNPMMVLQ--------------------LPE--RCYCADVIY--PMAVVATAERGLIVYQLENQ  200 (368)
T ss_dssp             EETTSEEEEECSSCSSCSEEEE--------------------CSS--CEEEEEEET--TEEEEEEGGGCEEEEECSSS
T ss_pred             ccCCCcEEEEECCCCcEEEEEe--------------------cCC--CceEEEecC--CeeEEEeCCCcEEEEEeccc
Confidence            9999999999999876544331                    122  366666654  57899999999999999874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.4e-26  Score=249.34  Aligned_cols=223  Identities=9%  Similarity=0.117  Sum_probs=168.9

Q ss_pred             CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEE
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF  101 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~  101 (763)
                      ....+..|++|+  ..+.+++..+.+|.. +.+++|+|+|++| ++++.|+.|++||+.+++.+..+ ..+. .+.+++|
T Consensus         7 s~~~d~~v~v~d--~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~-~~~~-~v~~~~~   81 (391)
T 1l0q_A            7 ANSESDNISVID--VTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-PAGS-SPQGVAV   81 (391)
T ss_dssp             EETTTTEEEEEE--TTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-ECSS-SEEEEEE
T ss_pred             EcCCCCEEEEEE--CCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE-ECCC-CccceEE
Confidence            345567889998  456677888887754 8999999999976 67779999999999999998888 3443 8999999


Q ss_pred             eeCCCCcEE-EEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 004290          102 VPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (763)
Q Consensus       102 ~p~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~  180 (763)
                      +|+  +++| ++++.++.|++||+.++          +.+..+. +...+.+++|+|++..++++++.|+.|++||++++
T Consensus        82 spd--g~~l~~~~~~~~~v~v~d~~~~----------~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  148 (391)
T 1l0q_A           82 SPD--GKQVYVTNMASSTLSVIDTTSN----------TVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK  148 (391)
T ss_dssp             CTT--SSEEEEEETTTTEEEEEETTTT----------EEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCC--CCEEEEEECCCCEEEEEECCCC----------eEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            999  6766 45556799999999863          2244444 44578999999955445578888999999999876


Q ss_pred             CCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCC
Q 004290          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (763)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~  260 (763)
                      +..           ..+   .            ....+.+++|+|++..++++++.++.|++||+++++....+.     
T Consensus       149 ~~~-----------~~~---~------------~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-----  197 (391)
T 1l0q_A          149 AVI-----------NTV---S------------VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-----  197 (391)
T ss_dssp             EEE-----------EEE---E------------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----
T ss_pred             cEE-----------EEE---e------------cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-----
Confidence            521           010   0            113468999999843344778889999999998764332210     


Q ss_pred             CCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe---CCCeEEEEECCCC
Q 004290          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY---SGEHVYLMDVNHA  311 (763)
Q Consensus       261 ~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s---~d~~i~iwd~~~~  311 (763)
                                      +.. .+.+++|+|+|++|++++   .++.|++||+.++
T Consensus       198 ----------------~~~-~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          198 ----------------VEA-APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             ----------------CSS-EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             ----------------cCC-CccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence                            112 489999999999999988   6899999998874

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.3e-28  Score=259.88  Aligned_cols=239  Identities=9%  Similarity=0.020  Sum_probs=167.7

Q ss_pred             cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p  103 (763)
                      .+.|+.++  +     .+....+++|...|.+++|+|+|       .++.+.+|+.+...   .+...|...|.+++|+|
T Consensus        33 as~D~TV~--d-----~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~---~~~~~~~~~V~~vawSP   95 (588)
T 2j04_A           33 TFPDISIG--Q-----PKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG---LLNSQPVCYPRVCKPSP   95 (588)
T ss_dssp             CSSSEEEE--E-----ECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC---SSTTSCSCCEEEEEECS
T ss_pred             EcCCceee--c-----ccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCce---EeecCCCCcEEEEEECC
Confidence            34555555  2     44455668999999999999999       56666666543222   23236688999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC-----ceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004290          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR-----RVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (763)
Q Consensus       104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~  178 (763)
                      +  |.+||+++.||.|++||...            .+..+. |..     .|.+++|+| ++++|++|+.||+|++||+.
T Consensus        96 d--G~~LAs~s~dg~V~iwd~~~------------~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           96 I--DDWMAVLSNNGNVSVFKDNK------------MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             S--SSCEEEEETTSCEEEEETTE------------EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECC
T ss_pred             C--CCEEEEEeCCCcEEEEeCCc------------eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECC
Confidence            9  89999999999999999652            255555 665     499999999 67999999999999999998


Q ss_pred             CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCC
Q 004290          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM  258 (763)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~  258 (763)
                      .+......       -..+..+       -....+|...|.+++|+|+ +  +++++.|++|++||+.......      
T Consensus       160 ~~~l~~~~-------~i~l~ti-------~~~~~gh~~~V~sVawSPd-g--Laass~D~tVrlWd~~~~~~~~------  216 (588)
T 2j04_A          160 KNSENTPE-------FYFESSI-------RLSDAGSKDWVTHIVWYED-V--LVAALSNNSVFSMTVSASSHQP------  216 (588)
T ss_dssp             CCTTTCCC-------CEEEEEE-------ECSCTTCCCCEEEEEEETT-E--EEEEETTCCEEEECCCSSSSCC------
T ss_pred             CCcccccc-------ceeeeee-------ecccccccccEEEEEEcCC-c--EEEEeCCCeEEEEECCCCcccc------
Confidence            86421000       0001100       0012356789999999997 4  8899999999999998754210      


Q ss_pred             CCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeee--ccC
Q 004290          259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF--TPT  332 (763)
Q Consensus       259 ~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~p~  332 (763)
                          ....+     . .+|.. .|.+|+|+  |..|++++ ++.|++||+.++.......++...+..++|  +|+
T Consensus       217 ----~~~tL-----~-~~h~~-~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d  278 (588)
T 2j04_A          217 ----VSRMI-----Q-NASRR-KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKE  278 (588)
T ss_dssp             ----CEEEE-----E-CCCSS-CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSS
T ss_pred             ----ceeee-----c-ccccC-cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCC
Confidence                00001     0 13433 59999999  68888887 699999999985543444456666666666  553

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=1.2e-26  Score=246.19  Aligned_cols=83  Identities=19%  Similarity=0.229  Sum_probs=78.4

Q ss_pred             ceEEeeecccccceeeeecccCCCCEEEEecCCCc-EEEEEcCcCcEEEEEe-c-CCcceEEEEeeCCCCeEEEEeCCCc
Q 004290          616 KQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGR-WFIWEKQTGRLIKMLL-G-DEAVVNCVQCHPFDCVVATSGIDNT  692 (763)
Q Consensus       616 ~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~-i~iWd~~tg~~~~~l~-g-H~~~V~~v~~sp~~~~laS~s~D~~  692 (763)
                      .+.+.+|...++++.    |+|||++|||||.|++ |+|||+.+++++..+. | |.+.|++++|+|++++|||+|.|++
T Consensus       188 ~~~~~~h~~~v~~~~----~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~  263 (355)
T 3vu4_A          188 GVLIKAHTNPIKMVR----LNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT  263 (355)
T ss_dssp             CEEECCCSSCEEEEE----ECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred             cEEEEccCCceEEEE----ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence            567889999999888    9999999999999999 9999999999999999 7 9999999999999999999999999


Q ss_pred             EEEEcCCCCC
Q 004290          693 IKIWTPSASV  702 (763)
Q Consensus       693 IrvW~~~~~~  702 (763)
                      |+||++..+.
T Consensus       264 v~iw~~~~~~  273 (355)
T 3vu4_A          264 LHVFEIFNDQ  273 (355)
T ss_dssp             EEEEESSCCS
T ss_pred             EEEEEccCCC
Confidence            9999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.7e-26  Score=247.00  Aligned_cols=244  Identities=16%  Similarity=0.189  Sum_probs=196.8

Q ss_pred             CcccccccccchhhhhccccceeeccccCceEEEEeCCC--CCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEE
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFC   98 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~--g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~   98 (763)
                      ....+..|++|+....+.+.+..+.+|.+.|++++|+|+  +++|++|+.|+.|++||+.+++  .+..+ .+|...|.+
T Consensus        28 ~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~  106 (379)
T 3jrp_A           28 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNS  106 (379)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEE
T ss_pred             EEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEE
Confidence            345678899999665577888999999999999999987  9999999999999999999987  66666 689999999


Q ss_pred             EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC------------CCCEEEEE
Q 004290           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG------------NPHVVWSA  166 (763)
Q Consensus        99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~------------~~~~l~s~  166 (763)
                      ++|+|+..+.+|++++.|+.|++||+.....        .....+..|...|.+++|+|.            ++.+|+++
T Consensus       107 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~  178 (379)
T 3jrp_A          107 VQWAPHEYGPLLLVASSDGKVSVVEFKENGT--------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG  178 (379)
T ss_dssp             EEECCGGGCSEEEEEETTSEEEEEECCTTSC--------CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred             EEeCCCCCCCEEEEecCCCcEEEEecCCCCc--------eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence            9999983348999999999999999987432        224567789999999999995            47899999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC--CcEEEEEeCCCcEEEEe
Q 004290          167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYD  244 (763)
Q Consensus       167 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~--~~~l~sgs~Dg~i~iwd  244 (763)
                      +.||.|++||++.....                     ...+.....|...|.+++|+|++  +.+|++++.|+.|++||
T Consensus       179 ~~dg~i~i~d~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          179 GADNLVKIWKYNSDAQT---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             ETTSCEEEEEEETTTTE---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             eCCCeEEEEEecCCCcc---------------------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence            99999999999876421                     01122234577889999999974  68999999999999999


Q ss_pred             CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      ++++......          .     ......+.. .|++++|+|+|++|++++.||.|++|++....
T Consensus       238 ~~~~~~~~~~----------~-----~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          238 QDNEQGPWKK----------T-----LLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             ESSTTSCCEE----------E-----ESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             CCCCCcccee----------e-----eeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            9976421100          0     001122333 69999999999999999999999999998643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.95  E-value=4.9e-27  Score=250.00  Aligned_cols=208  Identities=13%  Similarity=0.119  Sum_probs=163.4

Q ss_pred             cccCceEEEEeCCCCCEEEEE--eCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004290           48 GHQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasg--s~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~  125 (763)
                      .+...+++++|||||++||++  +.|++|+|||+.+++++..+  .|...|.+++|+|+  +++|++++.+ .+++|+..
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~--~~~~~V~~v~fspd--g~~l~s~s~~-~~~~~~~~  205 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI--ETRGEVKDLHFSTD--GKVVAYITGS-SLEVISTV  205 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE--ECSSCCCEEEECTT--SSEEEEECSS-CEEEEETT
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe--CCCCceEEEEEccC--CceEEeccce-eEEEEEec
Confidence            345679999999999998755  47899999999999999887  47788999999999  7999999855 56666666


Q ss_pred             CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC----cEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004290          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (763)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  201 (763)
                      ++..        ........|...|.+++|+| ++.++++++.|+    .+++||+......             .    
T Consensus       206 ~~~~--------~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~-------------~----  259 (365)
T 4h5i_A          206 TGSC--------IARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTS-------------V----  259 (365)
T ss_dssp             TCCE--------EEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEE-------------E----
T ss_pred             cCcc--------eeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceec-------------c----
Confidence            5321        11234567889999999999 668888988887    5888887765311             0    


Q ss_pred             CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccc
Q 004290          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (763)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  281 (763)
                          .......+|...|++++|+|+ +++||+|+.|++|+|||+++++.+..+                   ..+|.. .
T Consensus       260 ----~~~~~~~~~~~~V~~~~~Spd-g~~lasgs~D~~V~iwd~~~~~~~~~~-------------------~~gH~~-~  314 (365)
T 4h5i_A          260 ----LRSKQVTNRFKGITSMDVDMK-GELAVLASNDNSIALVKLKDLSMSKIF-------------------KQAHSF-A  314 (365)
T ss_dssp             ----EEEEEEESSCSCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEE-------------------TTSSSS-C
T ss_pred             ----eeeeeecCCCCCeEeEEECCC-CCceEEEcCCCEEEEEECCCCcEEEEe-------------------cCcccC-C
Confidence                011122356778999999997 789999999999999999987644322                   145666 6


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       282 i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      |++|+|+|||++|++++.|++|+||++...
T Consensus       315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          315 ITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999999999999999999999763

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=1.5e-26  Score=250.27  Aligned_cols=256  Identities=16%  Similarity=0.219  Sum_probs=198.2

Q ss_pred             cccccccccchhhhh-c-cccceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCC-------eEEEEEccCCC
Q 004290           24 PDVNHSLQMHSSLVR-R-LSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHS   93 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~-~-~~~~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~-------~~~~~~~~~h~   93 (763)
                      ...+..|.+|+.... + .+.+..+.+|.+.|++++|+| ++++||+|+.|++|+|||+.++       +.+..+ .+|.
T Consensus        53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~  131 (402)
T 2aq5_A           53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHT  131 (402)
T ss_dssp             CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCS
T ss_pred             EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCC
Confidence            345678888874221 1 145667899999999999999 9999999999999999999987       556677 7899


Q ss_pred             CceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceee--ecccCceeEEEEecCCCCEEEEEeCCCc
Q 004290           94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGT  171 (763)
Q Consensus        94 ~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~s~s~dg~  171 (763)
                      ..|.+++|+|++ ..+|++++.|+.|++||+.++          .++..+  .+|...|.+++|+| ++.+|++++.||.
T Consensus       132 ~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~  199 (402)
T 2aq5_A          132 KRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTG----------AAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKR  199 (402)
T ss_dssp             SCEEEEEECSSB-TTEEEEEETTSCEEEEETTTT----------EEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSE
T ss_pred             CeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCC----------CccEEEecCCCCCceEEEEECC-CCCEEEEEecCCc
Confidence            999999999993 379999999999999999863          336667  78999999999999 6689999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCcc-ceEEEEEeCCCCcEEEEE---eCCCcEEEEeCCC
Q 004290          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVG---GSDAFARLYDRRM  247 (763)
Q Consensus       172 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~~l~sg---s~Dg~i~iwd~~~  247 (763)
                      |++||+++++..              ..+.          ..|.. .+.+++|+|+ +.+|++|   +.|+.|++||+++
T Consensus       200 i~iwd~~~~~~~--------------~~~~----------~~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~  254 (402)
T 2aq5_A          200 VRVIEPRKGTVV--------------AEKD----------RPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKH  254 (402)
T ss_dssp             EEEEETTTTEEE--------------EEEE----------CSSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTB
T ss_pred             EEEEeCCCCcee--------------eeec----------cCCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCcc
Confidence            999999886521              1000          12333 3789999997 7899998   7999999999997


Q ss_pred             CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCCc-cce--EeecCCC
Q 004290          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGG-RAM--RYTVGDA  323 (763)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~~~~-~~~--~~~~~~~  323 (763)
                      +.....            ..      ...+.. .|.+++|+|++++|++++ .|+.|++||+.++.. ...  .+.+...
T Consensus       255 ~~~~~~------------~~------~~~~~~-~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~  315 (402)
T 2aq5_A          255 LEEPLS------------LQ------ELDTSS-GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKES  315 (402)
T ss_dssp             CSSCSE------------EE------ECCCCS-SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSC
T ss_pred             ccCCce------------EE------eccCCC-ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCc
Confidence            653110            00      011222 599999999999997655 699999999998663 222  2334578


Q ss_pred             CeeeeeccCCCCc
Q 004290          324 SKIMSFTPTLNGL  336 (763)
Q Consensus       324 ~~~~~~~p~~~~~  336 (763)
                      +..++|+|+...+
T Consensus       316 v~~~~~sp~~~~~  328 (402)
T 2aq5_A          316 QRGMGYMPKRGLE  328 (402)
T ss_dssp             CSEEEECCGGGSC
T ss_pred             ccceEEecccccc
Confidence            8899999975543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=1.2e-26  Score=249.85  Aligned_cols=248  Identities=12%  Similarity=0.033  Sum_probs=149.6

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEE----EccCCCCceEEEEEee--------CCCCcEEEEEeCC
Q 004290           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS----IETGHSANVFCTKFVP--------ETSDELVVSGAGD  116 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~----~~~~h~~~V~~v~~~p--------~~~~~~l~s~s~d  116 (763)
                      |...+....+++++.+||+|+.|++|+|||..++.....    .+.+|.+.|++++|+|        +  +++|+||+.|
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d--~~~las~s~D  165 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLA--EQVIASVGDD  165 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEE--EEEEEEEETT
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCC--CCEEEEEECC
Confidence            333344444455677899999999999999998865432    1368999999999998        5  6899999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (763)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  196 (763)
                      ++|+|||+...          .++..+..|...|.+++|+|+++.+|++++.||+|++||+++++...............
T Consensus       166 ~tv~~Wd~~~~----------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~  235 (393)
T 4gq1_A          166 CTLIIWRLTDE----------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW  235 (393)
T ss_dssp             SEEEEEEEETT----------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred             CeEEEEECCCC----------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence            99999999763          33566778999999999999777799999999999999999887542221111111111


Q ss_pred             EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (763)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (763)
                      ................+|...+.++.|.+.++..|++++.|+.+++||+..++....+.........+. +.+.......
T Consensus       236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~  314 (393)
T 4gq1_A          236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN-LLPNVQGISL  314 (393)
T ss_dssp             SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------C-CSCSEEEECS
T ss_pred             EEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE-Eccccccccc
Confidence            111111111122233467778899999854588999999999999999998765544322111100110 1110000011


Q ss_pred             CCccceeEEEEcC--CCCEEEEEeCCCeEEEEECCCC
Q 004290          277 RSSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       277 ~~~~~i~~v~~sp--dg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      + . ....+.|+|  ++.++++|+.|+.|++||+.++
T Consensus       315 ~-~-~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~  349 (393)
T 4gq1_A          315 F-P-SLLGACPHPRYMDYFATAHSQHGLIQLINTYEK  349 (393)
T ss_dssp             S-C-CSSCCEECSSCTTEEEEEETTTTEEEEEETTCT
T ss_pred             c-C-cceeEEEccCCCCEEEEEECCCCEEEEEECCCC
Confidence            1 1 133344554  4445667778999999998874

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=1.2e-25  Score=237.01  Aligned_cols=265  Identities=13%  Similarity=0.147  Sum_probs=190.0

Q ss_pred             Ccccccccccchhhhhc--cccceeeccccCceEEEEeCC--CCCEEEEEeCCCcEEEEeCCCC---------eEEEEEc
Q 004290           23 RPDVNHSLQMHSSLVRR--LSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSR---------KLLHSIE   89 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~--~~~~~~l~gH~~~V~~l~fsp--~g~~Lasgs~D~~v~iWd~~~~---------~~~~~~~   89 (763)
                      ....+..+++|+.....  .+....+.+|...|++++|+|  ++++|++|+.|+.|++||+.++         +.+..+ 
T Consensus        28 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-  106 (351)
T 3f3f_A           28 TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-  106 (351)
T ss_dssp             EEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-
T ss_pred             EeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee-
Confidence            34567899999854322  256788899999999999999  6999999999999999999887         556777 


Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC---CCCCceeeecccCceeEEEEecC--CCCEEE
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN---AITPSALYQCHTRRVKKLAVEVG--NPHVVW  164 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~sp~--~~~~l~  164 (763)
                      .+|...|.+++|+|+.++.+|++++.|+.|++||++..........   ..........|...+.+++|+|+  ++.+++
T Consensus       107 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~  186 (351)
T 3f3f_A          107 NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLA  186 (351)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEE
T ss_pred             cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEE
Confidence            7899999999999983348999999999999999987432110000   00000111268889999999995  378999


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCC---cEEEEEeCCCcEE
Q 004290          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGSDAFAR  241 (763)
Q Consensus       165 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~---~~l~sgs~Dg~i~  241 (763)
                      +++.|+.+.+|+...++.                       ..+....+|...|++++|+|+++   ++|++|+.|+.|+
T Consensus       187 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          187 VSALEQAIIYQRGKDGKL-----------------------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             EEETTEEEEEEECTTSCE-----------------------EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             EecCCCcEEEEccCCCce-----------------------eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence            999999998888766541                       12333456788999999999742   7999999999999


Q ss_pred             EEeCCCCCCCcccCCCCCCCC------c----------------ccc---cc-cccccCCCCCccceeEEEEcCCCCEEE
Q 004290          242 LYDRRMLPPLTSCQKRMSPPP------C----------------VNY---FC-PMHLSEHGRSSLHLTHVTFSPNGEEVL  295 (763)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~------~----------------~~~---~~-~~~~~~~g~~~~~i~~v~~spdg~~l~  295 (763)
                      +||++.+..............      .                ...   .. .......+|.. .|++++|+|++++|+
T Consensus       244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~  322 (351)
T 3f3f_A          244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG-EVWSVSWNLTGTILS  322 (351)
T ss_dssp             EEEEEECC---------------------------------------CCSEEEEEEEEECTTSS-CEEEEEECSSSCCEE
T ss_pred             EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc-cEEEEEEcCCCCEEE
Confidence            999987543221110000000      0                000   00 00001134555 699999999999999


Q ss_pred             EEeCCCeEEEEECCCCC
Q 004290          296 LSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       296 ~~s~d~~i~iwd~~~~~  312 (763)
                      +++.|+.|++|++.+++
T Consensus       323 s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          323 SAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             EEETTSCEEEEEECTTS
T ss_pred             EecCCCcEEEEecCcCc
Confidence            99999999999999865

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.9e-26  Score=248.36  Aligned_cols=173  Identities=13%  Similarity=0.041  Sum_probs=120.6

Q ss_pred             CceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC---CCCC-C-CC---------------------------------
Q 004290           94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS---GRGL-D-DN---------------------------------  135 (763)
Q Consensus        94 ~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~---~~~~-~-~~---------------------------------  135 (763)
                      .++.+++|+|+  |++|+++ .++.|++||+.++.   .... . ..                                 
T Consensus         5 ~p~~~v~~s~d--g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            5 HPLQNLLTSRD--GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             CCCCEEEECSS--SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             ccEEEEEecCC--CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            57889999999  6766665 47899999988754   0000 0 00                                 


Q ss_pred             ---------CCCCceeeecccCceeEEEEecCCCCE-EEEEeCCCcEEEEECC--CCCCCCCCCCCCcccceEEEecCCC
Q 004290          136 ---------AITPSALYQCHTRRVKKLAVEVGNPHV-VWSASEDGTLRQHDFR--QGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       136 ---------~~~~~~~~~~h~~~v~~l~~sp~~~~~-l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                               ...+.....+|.+.|.+++|+|++ .+ +++++.||.|++||+.  +++..           ..+..    
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~dg~v~iwd~~~~~~~~~-----------~~~~~----  145 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDE-SRLIACADSDKSLLVFDVDKTSKNVL-----------KLRKR----  145 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTS-SEEEEEEGGGTEEEEEEECSSSSSCE-----------EEEEE----
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCC-CEEEEEECCCCeEEEEECcCCCCcee-----------eeeec----
Confidence                     000011123466689999999954 55 5899999999999998  54421           11110    


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  283 (763)
                              ..+...|.+++|+|+ +.+|++|+.|+.|++|++.++.....         +...+       .+|.. .|+
T Consensus       146 --------~~~~~~v~~~~~sp~-~~~l~~~~~~g~v~~~~~~~~~~~~~---------~~~~~-------~~h~~-~v~  199 (450)
T 2vdu_B          146 --------FCFSKRPNAISIAED-DTTVIIADKFGDVYSIDINSIPEEKF---------TQEPI-------LGHVS-MLT  199 (450)
T ss_dssp             --------EECSSCEEEEEECTT-SSEEEEEETTSEEEEEETTSCCCSSC---------CCCCS-------EECSS-CEE
T ss_pred             --------ccCCCCceEEEEcCC-CCEEEEEeCCCcEEEEecCCcccccc---------cceee-------ecccC-ceE
Confidence                    123467999999997 68999999999999999987654320         00011       23444 699


Q ss_pred             EEEEcCC---CCEEEEEeCCCeEEEEECCCC
Q 004290          284 HVTFSPN---GEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       284 ~v~~spd---g~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +++|+|+   +++|++++.|+.|++||+.++
T Consensus       200 ~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~  230 (450)
T 2vdu_B          200 DVHLIKDSDGHQFIITSDRDEHIKISHYPQC  230 (450)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred             EEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence            9999999   999999999999999998773

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.2e-26  Score=241.79  Aligned_cols=153  Identities=6%  Similarity=-0.046  Sum_probs=114.9

Q ss_pred             CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (763)
Q Consensus       107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  186 (763)
                      +.+|++|+.||.|++||+.++.          .+..+.  ...|.++.|+|.    +++++.|++|++|+....      
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~~----------~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~------  105 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDSK----------TITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQ------  105 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSSS----------CEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTE------
T ss_pred             CCEEEEECCCCcEEEEECCCCc----------EEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCc------
Confidence            6899999999999999998632          244444  467888899883    889999999999997652      


Q ss_pred             CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeC--CCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcc
Q 004290          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (763)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p--~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (763)
                              ..+++...+...... ...|...|.+++|+|  + +++|++++.|+.|++||+++++.+...          
T Consensus       106 --------~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~----------  165 (343)
T 3lrv_A          106 --------ITILDSKTNKVLREI-EVDSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQYIVH----------  165 (343)
T ss_dssp             --------EEEEETTTCCEEEEE-ECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEE----------
T ss_pred             --------eEEeecCCcceeEEe-ecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEEEEE----------
Confidence                    233444443311111 123456899999999  7 689999999999999999987542211          


Q ss_pred             cccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       265 ~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                                .++....|++++|+|+|.+|++|+.|+.|++||++++
T Consensus       166 ----------~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~  202 (343)
T 3lrv_A          166 ----------SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP  202 (343)
T ss_dssp             ----------CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred             ----------ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence                      1122225999999999999999999999999999884

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.8e-25  Score=259.47  Aligned_cols=243  Identities=16%  Similarity=0.178  Sum_probs=196.9

Q ss_pred             CcccccccccchhhhhccccceeeccccCceEEEEeCCC--CCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEE
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFC   98 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~--g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~   98 (763)
                      ....++.|++|+....+.+.+..+.+|.+.|++++|+|+  +++|++|+.||.|++||+.+++  .+..+ .+|...|.+
T Consensus        26 tg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~  104 (753)
T 3jro_A           26 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNS  104 (753)
T ss_dssp             EEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEE
T ss_pred             EEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEE
Confidence            355688999998665577888999999999999999988  9999999999999999999987  66666 789999999


Q ss_pred             EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC------------CCCEEEEE
Q 004290           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG------------NPHVVWSA  166 (763)
Q Consensus        99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~------------~~~~l~s~  166 (763)
                      ++|+|+..+.+|++|+.||.|++||+.....        .....+.+|...|.+++|+|.            ++.+|++|
T Consensus       105 v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~--------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg  176 (753)
T 3jro_A          105 VQWAPHEYGPLLLVASSDGKVSVVEFKENGT--------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG  176 (753)
T ss_dssp             EEECCGGGCSEEEEEETTSEEEEEECCSSSC--------CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEE
T ss_pred             EEECCCCCCCEEEEEeCCCcEEEEEeecCCC--------cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEE
Confidence            9999983358999999999999999987432        224567789999999999995            46889999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC--CcEEEEEeCCCcEEEEe
Q 004290          167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYD  244 (763)
Q Consensus       167 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~--~~~l~sgs~Dg~i~iwd  244 (763)
                      +.||.|++||++++...                     ...+....+|...|++++|+|++  +.+|++|+.||.|++||
T Consensus       177 s~dg~I~iwd~~~~~~~---------------------~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          177 GADNLVKIWKYNSDAQT---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             ETTSCEEEEEEETTTTE---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             ECCCeEEEEeccCCccc---------------------ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence            99999999999876421                     01122234577899999999974  68999999999999999


Q ss_pred             CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +++++.....           .    .....+|.. .|++++|+|+|++|++++.||.|++|++..+
T Consensus       236 ~~~~~~~~~~-----------~----~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          236 QDNEQGPWKK-----------T----LLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             ESSSSSCCBC-----------C----BSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             CCCCCCccee-----------E----EeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            9976421110           0    001122433 5999999999999999999999999999853

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=2.5e-24  Score=240.38  Aligned_cols=228  Identities=11%  Similarity=0.125  Sum_probs=163.7

Q ss_pred             cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeC--CCCeEEEEEccCCCCceEEEEE
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY--SSRKLLHSIETGHSANVFCTKF  101 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~--~~~~~~~~~~~~h~~~V~~v~~  101 (763)
                      ...+..+.+|+  ..+.+++.++..+.. +.+++|+|+|++|++++.|++|++||+  .+++.+.++ . +...+..++|
T Consensus       155 ~~~d~~V~v~D--~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i-~-~g~~p~~va~  229 (543)
T 1nir_A          155 LRDAGQIALVD--GDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-K-IGIEARSVES  229 (543)
T ss_dssp             EGGGTEEEEEE--TTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-E-CCSEEEEEEE
T ss_pred             EcCCCeEEEEE--CCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-e-cCCCcceEEe
Confidence            34456788887  556677888883333 899999999999999999999999999  889988888 3 4556899999


Q ss_pred             ee----CCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCCCceeeec----------cc-CceeEEEEecCCCCEEEE
Q 004290          102 VP----ETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQC----------HT-RRVKKLAVEVGNPHVVWS  165 (763)
Q Consensus       102 ~p----~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----------h~-~~v~~l~~sp~~~~~l~s  165 (763)
                      +|    +  +++|++++. +++|.+||..+.          +++..+..          |. ..+..+.++|+++.++++
T Consensus       230 sp~~~~d--g~~l~v~~~~~~~v~v~D~~t~----------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs  297 (543)
T 1nir_A          230 SKFKGYE--DRYTIAGAYWPPQFAIMDGETL----------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  297 (543)
T ss_dssp             CCSTTCT--TTEEEEEEEESSEEEEEETTTC----------CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             CCCcCCC--CCEEEEEEccCCeEEEEecccc----------ccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence            99    8  788888874 899999998863          33444432          22 378999999988888889


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEE-EeCCCcEEEEe
Q 004290          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYD  244 (763)
Q Consensus       166 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~s-gs~Dg~i~iwd  244 (763)
                      ...++.|.+||+.+.+.+           . +..        +    .+...+.+++|+|+ +++|++ +..+++|.+||
T Consensus       298 ~~~~g~i~vvd~~~~~~l-----------~-~~~--------i----~~~~~~~~~~~spd-g~~l~va~~~~~~v~v~D  352 (543)
T 1nir_A          298 VKETGKVLLVNYKDIDNL-----------T-VTS--------I----GAAPFLHDGGWDSS-HRYFMTAANNSNKVAVID  352 (543)
T ss_dssp             ETTTTEEEEEECTTSSSC-----------E-EEE--------E----ECCSSCCCEEECTT-SCEEEEEEGGGTEEEEEE
T ss_pred             ECCCCeEEEEEecCCCcc-----------e-eEE--------e----ccCcCccCceECCC-CCEEEEEecCCCeEEEEE
Confidence            999999999999876532           0 000        0    01234667899998 566555 45689999999


Q ss_pred             CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC-CCEEEEEe-CCCeEEEEECCCC
Q 004290          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSY-SGEHVYLMDVNHA  311 (763)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd-g~~l~~~s-~d~~i~iwd~~~~  311 (763)
                      +.+++.+..+....                ..|... ...+ ++|+ |..++++. .|++|.+||+.+.
T Consensus       353 ~~tg~l~~~i~~g~----------------~ph~g~-g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~  403 (543)
T 1nir_A          353 SKDRRLSALVDVGK----------------TPHPGR-GANF-VHPKYGPVWSTSHLGDGSISLIGTDPK  403 (543)
T ss_dssp             TTTTEEEEEEECSS----------------SBCCTT-CEEE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             CCCCeEEEeeccCC----------------CCCCCC-Cccc-CCCCCccEEEeccCCCceEEEEEeCCC
Confidence            99886543332100                112221 2222 5787 55555555 5899999999873

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=7.6e-25  Score=221.63  Aligned_cols=227  Identities=11%  Similarity=0.050  Sum_probs=158.2

Q ss_pred             ccccccchhhhh-ccccceeeccccC-------------------------ceEEEEeCCC----CCEEEEEeC------
Q 004290           27 NHSLQMHSSLVR-RLSQERELEGHQG-------------------------CVNAISWNSK----GSLLISGSD------   70 (763)
Q Consensus        27 ~~~~~~~~~~~~-~~~~~~~l~gH~~-------------------------~V~~l~fsp~----g~~Lasgs~------   70 (763)
                      ...+.+|+.... .++.++++++|+.                         .|++|+|+|+    +.++++++.      
T Consensus        62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~  141 (356)
T 2w18_A           62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLG  141 (356)
T ss_dssp             SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEE
T ss_pred             cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEe
Confidence            466777764332 3377788888875                         4566677778    777887663      


Q ss_pred             --------------CCcEEEEeC-CCCeEEEEEccCCCCceEEEEEee-CCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290           71 --------------DTHINVWSY-SSRKLLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  134 (763)
Q Consensus        71 --------------D~~v~iWd~-~~~~~~~~~~~~h~~~V~~v~~~p-~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~  134 (763)
                                    |+.|++|++ .+++.+..+ .+|...+..++|+| ++++.+|++++.|++|+|||+.++       
T Consensus       142 l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-------  213 (356)
T 2w18_A          142 LTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-------  213 (356)
T ss_dssp             ETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-------
T ss_pred             cCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-------
Confidence                          788888888 447766666 57888888888888 333789999999999999999974       


Q ss_pred             CCCCCceeeeccc---CceeEEEEecCCCCEE------------EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          135 NAITPSALYQCHT---RRVKKLAVEVGNPHVV------------WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       135 ~~~~~~~~~~~h~---~~v~~l~~sp~~~~~l------------~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                         +++.++.+|.   ..+.+++|+| ++.++            ++|+.|++|++||..+++..           ..+  
T Consensus       214 ---k~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l-----------~v~--  276 (356)
T 2w18_A          214 ---QLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV-----------GVM--  276 (356)
T ss_dssp             ---CEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEE-----------EEE--
T ss_pred             ---cEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE-----------EEE--
Confidence               3467777654   4677889999 55655            67888999999999877522           000  


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                             .+....+|...+.+..++   +.++++|+.|++|+|||+.+++.+.++                    .+|..
T Consensus       277 -------~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL--------------------~gH~~  326 (356)
T 2w18_A          277 -------LYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALL--------------------PPVSD  326 (356)
T ss_dssp             -------EECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEE--------------------CCC--
T ss_pred             -------EeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcEEEEe--------------------cCCCC
Confidence                   001112343344444554   468999999999999999998655443                    34555


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004290          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (763)
Q Consensus       280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~  308 (763)
                      ..+..++|+|||++|++|+.|++|+|||+
T Consensus       327 ~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          327 QHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            34567999999999999999999999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=8.2e-24  Score=230.98  Aligned_cols=205  Identities=9%  Similarity=0.113  Sum_probs=146.7

Q ss_pred             ccCceEEEE---eCCCCCEEEEEe--------------CCC--cEEEEeCCCC--eEEEEEccCCCCceEEEEEeeCCCC
Q 004290           49 HQGCVNAIS---WNSKGSLLISGS--------------DDT--HINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSD  107 (763)
Q Consensus        49 H~~~V~~l~---fsp~g~~Lasgs--------------~D~--~v~iWd~~~~--~~~~~~~~~h~~~V~~v~~~p~~~~  107 (763)
                      ....+..++   |+|+++.++..+              .++  .|.+||..++  +.+..+ ..+ ..+.+++|+|+  +
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~-~~~~~~~~s~~--~  134 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRF-KTG-FQPKSVRFIDN--T  134 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEE-ECS-SCBCCCEESSS--S
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEE-cCC-CCceEEEEeCC--C
Confidence            455678888   999887665432              233  4444455445  555555 333 45669999996  7


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290          108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG  187 (763)
Q Consensus       108 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  187 (763)
                      .++++++.++.|++||+.++....     ......+.+|...|.+++|+| ++.++++++.|+.|++||+++++..    
T Consensus       135 ~~~~~~~~~~~i~~~d~~~g~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~----  204 (433)
T 3bws_A          135 RLAIPLLEDEGMDVLDINSGQTVR-----LSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYK----  204 (433)
T ss_dssp             EEEEEBTTSSSEEEEETTTCCEEE-----ECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEE----
T ss_pred             eEEEEeCCCCeEEEEECCCCeEee-----ecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEE----
Confidence            889999999999999998643111     001114567899999999988 6789999999999999999876521    


Q ss_pred             CCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEE-EEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004290          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (763)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l-~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (763)
                                           .....+...+.+++|+|++ .++ ++++.|+.|++||+++++.+..+            
T Consensus       205 ---------------------~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~~~d~~~~~~~~~~------------  250 (433)
T 3bws_A          205 ---------------------ATVDLTGKWSKILLYDPIR-DLVYCSNWISEDISVIDRKTKLEIRKT------------  250 (433)
T ss_dssp             ---------------------EEEECSSSSEEEEEEETTT-TEEEEEETTTTEEEEEETTTTEEEEEC------------
T ss_pred             ---------------------EEEcCCCCCeeEEEEcCCC-CEEEEEecCCCcEEEEECCCCcEEEEe------------
Confidence                                 1111345678999999984 555 56668999999999876533222            


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEe--------CCCeEEEEECCCC
Q 004290          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--------SGEHVYLMDVNHA  311 (763)
Q Consensus       267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s--------~d~~i~iwd~~~~  311 (763)
                              ..+.  .+.+++|+|+|++|++++        .|+.|++||+.++
T Consensus       251 --------~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~  293 (433)
T 3bws_A          251 --------DKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE  293 (433)
T ss_dssp             --------CCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred             --------cCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence                    1111  489999999999999988        4889999998773

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=4e-24  Score=231.51  Aligned_cols=201  Identities=11%  Similarity=0.069  Sum_probs=145.7

Q ss_pred             ccCceEEEEeCCCCC-EEEEEe----CCC----cEEEEeC--CCCeEE--EEEccCCCCceEEEEEeeCC----------
Q 004290           49 HQGCVNAISWNSKGS-LLISGS----DDT----HINVWSY--SSRKLL--HSIETGHSANVFCTKFVPET----------  105 (763)
Q Consensus        49 H~~~V~~l~fsp~g~-~Lasgs----~D~----~v~iWd~--~~~~~~--~~~~~~h~~~V~~v~~~p~~----------  105 (763)
                      +...|+..+|++.|. ++++|+    .||    +|+|||+  .+++++  ..+ .+|...+..+++.+..          
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~g~~  139 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSY-KVNKQWLRYAGHTASDEVFEKLTGIK  139 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEE-EcChhHHHHHHHHHHHHHHHHHcCCC
Confidence            345788889988874 666876    567    8999999  888877  335 6888888887777510          


Q ss_pred             --CCcEEEEEeCC------CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC---cEEE
Q 004290          106 --SDELVVSGAGD------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQ  174 (763)
Q Consensus       106 --~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg---~i~i  174 (763)
                        .+..++.++.+      +.|++||+..           .....+.+|...+.+++|+| +++.|++++.++   .|++
T Consensus       140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-----------~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~  207 (415)
T 2hqs_A          140 GAFRTRIAYVVQTNGGQFPYELRVSDYDG-----------YNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVI  207 (415)
T ss_dssp             CCTTCEEEEEEECSSSSCCEEEEEEETTS-----------CSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEE
T ss_pred             CcCCCEEEEEEecCCCCccceEEEEcCCC-----------CCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEE
Confidence              02455555544      7999999974           22567778999999999999 668888888875   9999


Q ss_pred             EECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEE-EEeCCCc--EEEEeCCCCCCC
Q 004290          175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAF--ARLYDRRMLPPL  251 (763)
Q Consensus       175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~-sgs~Dg~--i~iwd~~~~~~~  251 (763)
                      ||+.+++..            .+              ..+...+.+++|+|+ +++|+ +++.|+.  |++||+.+++..
T Consensus       208 ~d~~tg~~~------------~l--------------~~~~~~~~~~~~spd-g~~la~~~~~~g~~~i~~~d~~~~~~~  260 (415)
T 2hqs_A          208 QTLANGAVR------------QV--------------ASFPRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQIR  260 (415)
T ss_dssp             EETTTCCEE------------EE--------------ECCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred             EECCCCcEE------------Ee--------------ecCCCcccCEEEcCC-CCEEEEEEecCCCceEEEEECCCCCEE
Confidence            999887521            11              123456889999998 56666 6766655  999999876421


Q ss_pred             cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCC
Q 004290          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE--HVYLMDVNHA  311 (763)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~--~i~iwd~~~~  311 (763)
                       .+                    .++.. .+.+++|+|||++|+.++. ++  .|++||+.++
T Consensus       261 -~l--------------------~~~~~-~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~  301 (415)
T 2hqs_A          261 -QV--------------------TDGRS-NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG  301 (415)
T ss_dssp             -EC--------------------CCCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred             -eC--------------------cCCCC-cccceEECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence             11                    12332 5899999999999998886 44  6777787663

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=1.9e-23  Score=226.09  Aligned_cols=222  Identities=9%  Similarity=0.038  Sum_probs=162.0

Q ss_pred             cccccccchhhhhccccc--eeeccccCceEEEEeCC--------------CCCEEEEEeCC------CcEEEEeCCCCe
Q 004290           26 VNHSLQMHSSLVRRLSQE--RELEGHQGCVNAISWNS--------------KGSLLISGSDD------THINVWSYSSRK   83 (763)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~--~~l~gH~~~V~~l~fsp--------------~g~~Lasgs~D------~~v~iWd~~~~~   83 (763)
                      .+..+++|+....+.+++  ..+.+|...+..+++++              .+..|+.++.+      +.|++||+..+ 
T Consensus        91 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-  169 (415)
T 2hqs_A           91 YNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-  169 (415)
T ss_dssp             EEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-
T ss_pred             EEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-
Confidence            444889998511333444  66899999999888875              26667766654      79999999754 


Q ss_pred             EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC---cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC
Q 004290           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP  160 (763)
Q Consensus        84 ~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  160 (763)
                      ....+ .+|...|.+++|+|+  ++.|++++.++   .|++||+.++.           ...+..|...+.+++|+|++.
T Consensus       170 ~~~~l-~~~~~~v~~~~~Spd--g~~la~~s~~~~~~~i~~~d~~tg~-----------~~~l~~~~~~~~~~~~spdg~  235 (415)
T 2hqs_A          170 NQFVV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGA-----------VRQVASFPRHNGAPAFSPDGS  235 (415)
T ss_dssp             SCEEE-EEESSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCC-----------EEEEECCSSCEEEEEECTTSS
T ss_pred             CCEEE-eCCCCcceeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCc-----------EEEeecCCCcccCEEEcCCCC
Confidence            45556 578899999999999  79999999885   99999998642           345667888999999999543


Q ss_pred             CEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC-C
Q 004290          161 HVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-D  237 (763)
Q Consensus       161 ~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~-D  237 (763)
                      .++++++.++.  |++||+.+++..                          ....+...+.+++|+|+ +++|++++. +
T Consensus       236 ~la~~~~~~g~~~i~~~d~~~~~~~--------------------------~l~~~~~~~~~~~~spd-g~~l~~~s~~~  288 (415)
T 2hqs_A          236 KLAFALSKTGSLNLYVMDLASGQIR--------------------------QVTDGRSNNTEPTWFPD-SQNLAFTSDQA  288 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEE--------------------------ECCCCSSCEEEEEECTT-SSEEEEEECTT
T ss_pred             EEEEEEecCCCceEEEEECCCCCEE--------------------------eCcCCCCcccceEECCC-CCEEEEEECCC
Confidence            34447777665  999999876411                          11124457889999998 677887776 4


Q ss_pred             C--cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---CeEEEEECCCC
Q 004290          238 A--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA  311 (763)
Q Consensus       238 g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d---~~i~iwd~~~~  311 (763)
                      +  .|++||+.+++... +                    ..+.. .+.+++|+|+|++|+.++.+   ..|++||+.++
T Consensus       289 g~~~i~~~d~~~~~~~~-l--------------------~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~  345 (415)
T 2hqs_A          289 GRPQVYKVNINGGAPQR-I--------------------TWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  345 (415)
T ss_dssp             SSCEEEEEETTSSCCEE-C--------------------CCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred             CCcEEEEEECCCCCEEE-E--------------------ecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence            5  67777888754211 0                    01212 48899999999999988864   58999998874

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=5.7e-23  Score=229.41  Aligned_cols=204  Identities=12%  Similarity=0.122  Sum_probs=149.7

Q ss_pred             EeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC--CCCCCCCCCC
Q 004290           57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL--SRFSGRGLDD  134 (763)
Q Consensus        57 ~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~--~~~~~~~~~~  134 (763)
                      +|+|++.++++++.|++|.+||..+++++.++..++.  +.+++|+|+  +++|++++.|++|++||+  .+.       
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spd--g~~l~v~~~d~~V~v~D~~~~t~-------  212 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSAS--GRYLLVIGRDARIDMIDLWAKEP-------  212 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTT--SCEEEEEETTSEEEEEETTSSSC-------
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCC--CCEEEEECCCCeEEEEECcCCCC-------
Confidence            3889999999999999999999999999999844554  899999999  799999999999999999  442       


Q ss_pred             CCCCCceeeecccCceeEEEEec----CCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeecc
Q 004290          135 NAITPSALYQCHTRRVKKLAVEV----GNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (763)
Q Consensus       135 ~~~~~~~~~~~h~~~v~~l~~sp----~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (763)
                         +.+..+. +...+..++|+|    ++ +++++++ .+++|.+||..+.+..           ..+ ....   ....
T Consensus       213 ---~~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~-----------~~i-~~~g---~~~~  272 (543)
T 1nir_A          213 ---TKVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPK-----------QIV-STRG---MTVD  272 (543)
T ss_dssp             ---EEEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEE-----------EEE-ECCE---ECSS
T ss_pred             ---cEEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccc-----------eee-cccC---cccC
Confidence               3355665 456689999999    66 5555665 5899999998876532           111 1000   0000


Q ss_pred             CCCCC-ccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc
Q 004290          210 DPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (763)
Q Consensus       210 ~~~~~-~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s  288 (763)
                      ....| ...+.++.++|+++.++++...++.|.+||..+.+.+..           ...        .+. ..+..++|+
T Consensus       273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~-----------~~i--------~~~-~~~~~~~~s  332 (543)
T 1nir_A          273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV-----------TSI--------GAA-PFLHDGGWD  332 (543)
T ss_dssp             SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE-----------EEE--------ECC-SSCCCEEEC
T ss_pred             ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee-----------EEe--------ccC-cCccCceEC
Confidence            00001 226889999998777888888999999999987643210           000        011 137789999


Q ss_pred             CCCCEEEEEe-CCCeEEEEECCCC
Q 004290          289 PNGEEVLLSY-SGEHVYLMDVNHA  311 (763)
Q Consensus       289 pdg~~l~~~s-~d~~i~iwd~~~~  311 (763)
                      |+|++|++++ .+++|.+||+.++
T Consensus       333 pdg~~l~va~~~~~~v~v~D~~tg  356 (543)
T 1nir_A          333 SSHRYFMTAANNSNKVAVIDSKDR  356 (543)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             CCCCEEEEEecCCCeEEEEECCCC
Confidence            9999887665 4899999999885

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=2.7e-21  Score=226.37  Aligned_cols=218  Identities=8%  Similarity=0.014  Sum_probs=149.3

Q ss_pred             cCceEEEEeCCCCCEEEEEeC-CC-----cEEEEeCCCCeEEEEEccCCCC------------------------ceEEE
Q 004290           50 QGCVNAISWNSKGSLLISGSD-DT-----HINVWSYSSRKLLHSIETGHSA------------------------NVFCT   99 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~-D~-----~v~iWd~~~~~~~~~~~~~h~~------------------------~V~~v   99 (763)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++....+ ..+..                        .|.++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence            457999999999999999998 88     8999999999877666 33332                        37899


Q ss_pred             EEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (763)
Q Consensus       100 ~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~  179 (763)
                      +|+|+  +++|++++. +.|++||+..+..        .....+..|...+..++|+| ++++|+.++ ++.|++||+.+
T Consensus       115 ~~SpD--g~~l~~~~~-~~i~~~d~~~~~~--------~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~  181 (741)
T 2ecf_A          115 QWSPD--AQRLLFPLG-GELYLYDLKQEGK--------AAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLAS  181 (741)
T ss_dssp             EECTT--SSEEEEEET-TEEEEEESSSCST--------TSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTT
T ss_pred             EECCC--CCEEEEEeC-CcEEEEECCCCCc--------ceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCC
Confidence            99999  799999886 9999999986410        01445666788899999999 667887776 46999999987


Q ss_pred             CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC---------------------
Q 004290          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---------------------  238 (763)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg---------------------  238 (763)
                      ++..........   ...... .   ..+.  ......+.+++|+|+ +++|++++.|+                     
T Consensus       182 g~~~~~~~~~~~---~~~~g~-~---~~v~--~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~  251 (741)
T 2ecf_A          182 GRQMQLTADGST---TIGNGI-A---EFVA--DEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQ  251 (741)
T ss_dssp             TEEEECCCCCCS---SEEESC-C---CHHH--HHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred             CCEEEeccCCcc---ceeccc-c---ceee--eeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence            652211000000   000000 0   0000  000112467999998 67888887665                     


Q ss_pred             ------------cEEEEeCCC-CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-----C
Q 004290          239 ------------FARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-----G  300 (763)
Q Consensus       239 ------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-----d  300 (763)
                                  .|++||+.+ ++......             .     .++.. .+..++| |||++|++++.     +
T Consensus       252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~-------------~-----~~~~~-~~~~~~~-pDg~~l~~~~~~~~~~~  311 (741)
T 2ecf_A          252 RYPAAGDANVQVKLGVISPAEQAQTQWIDL-------------G-----KEQDI-YLARVNW-RDPQHLSFQRQSRDQKK  311 (741)
T ss_dssp             ECCBTTSCCCEEEEEEECSSTTCCCEEECC-------------C-----SCSSE-EEEEEEE-EETTEEEEEEEETTSSE
T ss_pred             ecCCCCCCCCeeEEEEEECCCCCceEEecC-------------C-----CCcce-EEEEEEe-CCCCEEEEEEecccCCe
Confidence                        788899887 64321100             0     11323 5999999 99999997764     5


Q ss_pred             CeEEEEECCCC
Q 004290          301 EHVYLMDVNHA  311 (763)
Q Consensus       301 ~~i~iwd~~~~  311 (763)
                      ..|++||+.++
T Consensus       312 ~~i~~~d~~~g  322 (741)
T 2ecf_A          312 LDLVEVTLASN  322 (741)
T ss_dssp             EEEEEEETTTC
T ss_pred             EEEEEEECCCC
Confidence            68999998875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=6e-22  Score=240.21  Aligned_cols=237  Identities=11%  Similarity=0.066  Sum_probs=154.3

Q ss_pred             cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCC------CcEEEEeCCCCeEEEEEccCCCCce-----
Q 004290           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANV-----   96 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D------~~v~iWd~~~~~~~~~~~~~h~~~V-----   96 (763)
                      ..|.+|+.  .. ...+.|.+|...|.+++|||||++||+++.+      ..|++||+.+++ ...+ ..|...+     
T Consensus        33 ~~l~~~~~--~g-g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~l-t~~~~~~~~~~~  107 (1045)
T 1k32_A           33 DDLWEHDL--KS-GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRI-TYFSGKSTGRRM  107 (1045)
T ss_dssp             TEEEEEET--TT-CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEEC-CCCCEEEETTEE
T ss_pred             CcEEEEEC--CC-CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEc-ccCCCccccccc
Confidence            35555552  22 3356788999999999999999999988643      479999998887 4555 6788888     


Q ss_pred             --EEEEEeeCCCCcEEEEEeCC------CcEEEEECCCCCCCCCCCCC--------------------------------
Q 004290           97 --FCTKFVPETSDELVVSGAGD------AEVRLFNLSRFSGRGLDDNA--------------------------------  136 (763)
Q Consensus        97 --~~v~~~p~~~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~--------------------------------  136 (763)
                        .+++|+|+  ++++++++.+      ..|.+|++..+....+....                                
T Consensus       108 ~~~~~~~SpD--g~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~  185 (1045)
T 1k32_A          108 FTDVAGFDPD--GNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRG  185 (1045)
T ss_dssp             CSEEEEECTT--CCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCC
T ss_pred             ccccccCCCC--CEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcC
Confidence              99999999  6777777754      35777877643211100000                                


Q ss_pred             -------CCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeecc
Q 004290          137 -------ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (763)
Q Consensus       137 -------~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (763)
                             ......+.+|...+.++.|++ + .++++++.|+.+.+|.+......                     ...+.
T Consensus       186 ~lw~~~~~~~~~~l~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~---------------------~~~l~  242 (1045)
T 1k32_A          186 KIWIEVNSGAFKKIVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKD---------------------LRKHT  242 (1045)
T ss_dssp             EEEEEEETTEEEEEECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCS---------------------CEECC
T ss_pred             CEEEECCCCCeEECcCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCCCc---------------------ceEec
Confidence                   001123456888899999998 4 67778888899999986542210                     00111


Q ss_pred             CCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc-
Q 004290          210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS-  288 (763)
Q Consensus       210 ~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s-  288 (763)
                         .+. .+...+|+|+ +++|+.+ .++.|++||+... .+..+...... ...        ....+.. .+.+++|+ 
T Consensus       243 ---~~~-~~~~~~~SpD-G~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~-~~~--------~~~~~~~-~v~~~~~S~  305 (1045)
T 1k32_A          243 ---SFT-DYYPRHLNTD-GRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLE-SPE--------DRIISIP-SKFAEDFSP  305 (1045)
T ss_dssp             ---CCC-SSCEEEEEES-SSCEEEE-ETTEEEEECTTTC-CEEECCCCCCC-BCC--------SEEEECG-GGGEEEEEE
T ss_pred             ---CCC-CcceeeEcCC-CCEEEEE-eCCEEEEecCCce-EeeeeccCccc-ccc--------ccccccc-ccceeeecC
Confidence               111 2456799997 6777776 4899999998432 22221110000 000        0001122 48999999 


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCC
Q 004290          289 PNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       289 pdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      |||++|++++ ++.|++|++.++.
T Consensus       306 pdG~~la~~~-~~~i~~~~~~~~~  328 (1045)
T 1k32_A          306 LDGDLIAFVS-RGQAFIQDVSGTY  328 (1045)
T ss_dssp             CGGGCEEEEE-TTEEEEECTTSSB
T ss_pred             CCCCEEEEEE-cCEEEEEcCCCCc
Confidence            9999998887 8899999988753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=1.4e-19  Score=189.51  Aligned_cols=198  Identities=13%  Similarity=0.135  Sum_probs=134.0

Q ss_pred             EEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-CCcEEEEECCCCCCCCCC
Q 004290           56 ISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLD  133 (763)
Q Consensus        56 l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~  133 (763)
                      ..|.+++. .+++++.++.|.+||+.+++.+..+ ..+...+ +++|+|+  ++++++++. ++.|.+||+.++.     
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~-~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~~-----   73 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI-TLGYDFV-DTAITSD--CSNVVVTSDFCQTLVQIETQLEP-----   73 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-ECCCCEE-EEEECSS--SCEEEEEESTTCEEEEEECSSSS-----
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-EccCCcc-eEEEcCC--CCEEEEEeCCCCeEEEEECCCCc-----
Confidence            34556555 4778889999999999999988887 4555666 9999999  675555554 8999999998632     


Q ss_pred             CCCCCC-ceeeecccCceeEEEEecCCCCEEEEEeCCC---cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeecc
Q 004290          134 DNAITP-SALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (763)
Q Consensus       134 ~~~~~~-~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (763)
                           . ...+..+..+..+++|+| ++++++++..++   .|.+||+.+++..           .. ..          
T Consensus        74 -----~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~-----------~~-~~----------  125 (331)
T 3u4y_A           74 -----PKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFI-----------ST-IP----------  125 (331)
T ss_dssp             -----CEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEE-----------EE-EE----------
T ss_pred             -----eeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeE-----------EE-EE----------
Confidence                 2 445555666666699999 557776555443   8999999876521           00 00          


Q ss_pred             CCCCCccceEEEEEeCCCCcEEEEEeCCCc-EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc
Q 004290          210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (763)
Q Consensus       210 ~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s  288 (763)
                          ......+++|+|++..++++...++. |.+|++.....+....              .....  . ......++|+
T Consensus       126 ----~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--------------~~~~~--~-~~~~~~~~~s  184 (331)
T 3u4y_A          126 ----IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--------------QEFIS--G-GTRPFNITFT  184 (331)
T ss_dssp             ----CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--------------EEEEC--S-SSSEEEEEEC
T ss_pred             ----CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC--------------Ccccc--C-CCCccceEEC
Confidence                12245799999984445566667688 9999998543221100              00001  1 1137899999


Q ss_pred             CCCCEEEEEe-CCCeEEEEECCCC
Q 004290          289 PNGEEVLLSY-SGEHVYLMDVNHA  311 (763)
Q Consensus       289 pdg~~l~~~s-~d~~i~iwd~~~~  311 (763)
                      |+|++|++++ .++.|++||+.++
T Consensus       185 pdg~~l~v~~~~~~~v~v~d~~~~  208 (331)
T 3u4y_A          185 PDGNFAFVANLIGNSIGILETQNP  208 (331)
T ss_dssp             TTSSEEEEEETTTTEEEEEECSST
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCC
Confidence            9999776665 5899999998874

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.86  E-value=7.7e-20  Score=192.31  Aligned_cols=195  Identities=14%  Similarity=0.197  Sum_probs=128.0

Q ss_pred             EEEEEeCCCcEEEEeCC-CC--eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC-CcEEEEECCCCCCCCCCCCCCCC
Q 004290           64 LLISGSDDTHINVWSYS-SR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSGRGLDDNAITP  139 (763)
Q Consensus        64 ~Lasgs~D~~v~iWd~~-~~--~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d-g~I~iwd~~~~~~~~~~~~~~~~  139 (763)
                      ++++++.|+.|++||+. ++  +.+..+  .+...+.+++|+|+  +++|++++.+ +.|.+|++....+.      ...
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spd--g~~l~~~~~~~~~v~~~~~~~~~~~------~~~   76 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGA------LTF   76 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCC------EEE
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCC--CCEEEEeecCCCeEEEEEecCCCCc------eee
Confidence            44555789999999995 34  333333  57778999999999  7888888876 99999999732111      122


Q ss_pred             ceeeecccCceeEEEEecCCCCEEE-EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccce
Q 004290          140 SALYQCHTRRVKKLAVEVGNPHVVW-SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL  218 (763)
Q Consensus       140 ~~~~~~h~~~v~~l~~sp~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  218 (763)
                      +..+..+. .+..++|+|++ .+++ ++..++.|.+||+..+..           ...+..        +    .....+
T Consensus        77 ~~~~~~~~-~~~~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~-----------~~~~~~--------~----~~~~~~  131 (343)
T 1ri6_A           77 AAESALPG-SLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLP-----------VGVVDV--------V----EGLDGC  131 (343)
T ss_dssp             EEEEECSS-CCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEE-----------EEEEEE--------E----CCCTTB
T ss_pred             ccccccCC-CCcEEEEcCCC-CEEEEEecCCCeEEEEECCCCcc-----------cccccc--------c----cCCCCc
Confidence            34444333 78999999954 5554 444588999999852210           000000        0    012347


Q ss_pred             EEEEEeCCCCcEEEEEe-CCCcEEEEeCCC-CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEE
Q 004290          219 KSCDISSTRPHLLLVGG-SDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  296 (763)
Q Consensus       219 ~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~  296 (763)
                      .+++|+|+ ++++++++ .++.|++||+.+ ++... .          .   ....  ..+....+..++|+|+|++|++
T Consensus       132 ~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~-~----------~---~~~~--~~~~~~~~~~~~~~pdg~~l~~  194 (343)
T 1ri6_A          132 HSANISPD-NRTLWVPALKQDRICLFTVSDDGHLVA-Q----------D---PAEV--TTVEGAGPRHMVFHPNEQYAYC  194 (343)
T ss_dssp             CCCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEE-E----------E---EEEE--ECSTTCCEEEEEECTTSSEEEE
T ss_pred             eEEEECCC-CCEEEEecCCCCEEEEEEecCCCceee-e----------c---cccc--ccCCCCCcceEEECCCCCEEEE
Confidence            78999997 56677766 899999999986 32110 0          0   0000  0011124888999999998876


Q ss_pred             Ee-CCCeEEEEECCC
Q 004290          297 SY-SGEHVYLMDVNH  310 (763)
Q Consensus       297 ~s-~d~~i~iwd~~~  310 (763)
                      ++ .++.|.+|++..
T Consensus       195 ~~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          195 VNELNSSVDVWELKD  209 (343)
T ss_dssp             EETTTTEEEEEESSC
T ss_pred             EeCCCCEEEEEEecC
Confidence            66 689999999965

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=1.6e-20  Score=219.28  Aligned_cols=224  Identities=8%  Similarity=-0.002  Sum_probs=145.4

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCC---ceEEEEEeeCCCCcEEEEEeCC---------CcE
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAGD---------AEV  119 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~---~V~~v~~~p~~~~~~l~s~s~d---------g~I  119 (763)
                      .+.+++|+|||+++++ +.|++|++||+.+++....+ ..|..   .|.+++|+|+  |++|++++.+         +.|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~SpD--g~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISPD--REYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECTT--SSEEEEEESCCCCSSSCCCSEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-ccccccccccceEEECCC--CCEEEEEecCccceeecceeeE
Confidence            4678999999998877 78999999999999887777 56654   4999999999  7999999875         778


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      ++||+.++..        ..+.....|...+..++|+| +++.|+.++. +.|++||+.+++.......+...  .++..
T Consensus        94 ~~~d~~~~~~--------~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~--~~~~g  161 (723)
T 1xfd_A           94 VLSKIPHGDP--------QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG--VIYNG  161 (723)
T ss_dssp             EEEESSSCCC--------EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTT--TEEEE
T ss_pred             EEEECCCCce--------EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCC--ceECc
Confidence            8999987432        11222334556689999999 5677777765 79999999876532000000000  00000


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC----------------------------------cEEEEeC
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----------------------------------FARLYDR  245 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg----------------------------------~i~iwd~  245 (763)
                      .. .   .+.. ......+.+++|+|+ +++|++++.|+                                  .|++||+
T Consensus       162 ~~-~---~v~~-ee~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~  235 (723)
T 1xfd_A          162 LS-D---WLYE-EEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL  235 (723)
T ss_dssp             EC-C---HHHH-HTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred             cc-c---eeEE-EEeccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence            00 0   0000 000113478999998 68888887553                                  6888888


Q ss_pred             CCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC----CCeEEEEECCCCC
Q 004290          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAG  312 (763)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~----d~~i~iwd~~~~~  312 (763)
                      .+++....+...            ...  .++ ...+..++|+|||++|++.+.    +..|++||+.++.
T Consensus       236 ~~~~~~~~l~~~------------~~~--~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~  291 (723)
T 1xfd_A          236 NGPTHDLEMMPP------------DDP--RMR-EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV  291 (723)
T ss_dssp             SSSCCCEECCCC------------CCG--GGS-SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             CCCceeEEeeCC------------ccC--CCc-cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence            766532221100            000  011 225899999999998877653    3579999988753

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.85  E-value=7e-20  Score=187.86  Aligned_cols=180  Identities=13%  Similarity=0.122  Sum_probs=125.5

Q ss_pred             EEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC-CCCCCCCCCCCCCceeeec
Q 004290           67 SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR-FSGRGLDDNAITPSALYQC  145 (763)
Q Consensus        67 sgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~  145 (763)
                      +++.|++|++||+.+++.....  .|...|.+++|+|+  +++|++++ ++.|++||+.. +..          ......
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spd--g~~l~~~~-~~~i~~~d~~~~~~~----------~~~~~~   81 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPD--GKYLLLNS-EGLLYRLSLAGDPSP----------EKVDTG   81 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEE--EESSCCEEEEECTT--SSEEEEEE-TTEEEEEESSSCCSC----------EECCCT
T ss_pred             CCCcceeEEEEeCCCCceeeec--cCCcceEeeEECCC--CCEEEEEc-CCeEEEEeCCCCCCc----------eEeccc
Confidence            4567899999999998876444  68889999999999  78999887 78999999986 431          333334


Q ss_pred             c-cCceeEEEEecCCCCEEEEEe--CCCcEEEEECC--CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEE
Q 004290          146 H-TRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFR--QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS  220 (763)
Q Consensus       146 h-~~~v~~l~~sp~~~~~l~s~s--~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (763)
                      + ...+.+++|+| ++.+|++++  .++.+.+|.+.  .++.                       ..+.    ....+..
T Consensus        82 ~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~~~----~~~~~~~  133 (297)
T 2ojh_A           82 FATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGTP-----------------------RLMT----KNLPSYW  133 (297)
T ss_dssp             TCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCCC-----------------------EECC----SSSSEEE
T ss_pred             cccccccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCce-----------------------EEee----cCCCccc
Confidence            4 46789999999 567888887  34556666553  3321                       0111    1123788


Q ss_pred             EEEeCCCCcEEE-EEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 004290          221 CDISSTRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  299 (763)
Q Consensus       221 i~~~p~~~~~l~-sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~  299 (763)
                      ++|+|+ +++|+ +++.++.++||+++.....            ...+       ..+.. .+.+++|+|+|++|+.++.
T Consensus       134 ~~~spd-g~~l~~~~~~~~~~~l~~~~~~~~~------------~~~~-------~~~~~-~~~~~~~s~dg~~l~~~~~  192 (297)
T 2ojh_A          134 HGWSPD-GKSFTYCGIRDQVFDIYSMDIDSGV------------ETRL-------THGEG-RNDGPDYSPDGRWIYFNSS  192 (297)
T ss_dssp             EEECTT-SSEEEEEEEETTEEEEEEEETTTCC------------EEEC-------CCSSS-CEEEEEECTTSSEEEEEEC
T ss_pred             eEECCC-CCEEEEEECCCCceEEEEEECCCCc------------ceEc-------ccCCC-ccccceECCCCCEEEEEec
Confidence            999998 45555 7889999999996532100            0000       11222 5899999999998887774


Q ss_pred             -CCeEEEEECCC
Q 004290          300 -GEHVYLMDVNH  310 (763)
Q Consensus       300 -d~~i~iwd~~~  310 (763)
                       ++.+++|++..
T Consensus       193 ~~~~~~i~~~~~  204 (297)
T 2ojh_A          193 RTGQMQIWRVRV  204 (297)
T ss_dssp             TTSSCEEEEEET
T ss_pred             CCCCccEEEECC
Confidence             88999998763

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=7.5e-20  Score=212.87  Aligned_cols=201  Identities=12%  Similarity=-0.012  Sum_probs=139.3

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC----
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR----  126 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~----  126 (763)
                      ..|.+++|+|| +.|+.+. |+.|++||+.+++.....  .+...+.+++|+|+  |+.|+++ .|+.|++||+..    
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~Spd--G~~la~~-~~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLF--DTNEETASLDFSPV--GDRVAYV-RNHNLYIARGGKLGEG  154 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEE--CCTTCCTTCEECTT--SSEEEEE-ETTEEEEEECBCTTSC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEcc--CCcccccCCcCCCC--CCEEEEE-ECCeEEEEecCccccc
Confidence            56999999999 6555554 489999999998765544  56677899999999  7888885 689999999986    


Q ss_pred             -CCCCCCCCCCCCCceeeeccc--------------CceeEEEEecCCCCEEEEEe------------------------
Q 004290          127 -FSGRGLDDNAITPSALYQCHT--------------RRVKKLAVEVGNPHVVWSAS------------------------  167 (763)
Q Consensus       127 -~~~~~~~~~~~~~~~~~~~h~--------------~~v~~l~~sp~~~~~l~s~s------------------------  167 (763)
                       +..          ......+.              ..+.++.|+| ++++|++++                        
T Consensus       155 ~g~~----------~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~  223 (706)
T 2z3z_A          155 MSRA----------IAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL  223 (706)
T ss_dssp             CCCC----------EESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred             CCCc----------EEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence             332          11111122              2358999999 567777776                        


Q ss_pred             ---------CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004290          168 ---------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (763)
Q Consensus       168 ---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg  238 (763)
                               .+..|++||+.+++                       ...+.....+...+.+++|+|+ +++|++++.++
T Consensus       224 ~y~~~g~~~~~~~l~~~d~~~~~-----------------------~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~  279 (706)
T 2z3z_A          224 YYPMAGTPSHHVTVGIYHLATGK-----------------------TVYLQTGEPKEKFLTNLSWSPD-ENILYVAEVNR  279 (706)
T ss_dssp             CCCBTTSCCCEEEEEEEETTTTE-----------------------EEECCCCSCTTCEEEEEEECTT-SSEEEEEEECT
T ss_pred             eCCCCCCCCCeeEEEEEECCCCc-----------------------eEeeccCCCCceeEeeEEEECC-CCEEEEEEeCC
Confidence                     23457777766543                       2222222245567899999997 68888887775


Q ss_pred             -----cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC--CCCEEEEEeCCCeEEEEECC
Q 004290          239 -----FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVN  309 (763)
Q Consensus       239 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp--dg~~l~~~s~d~~i~iwd~~  309 (763)
                           .|++||+.+++....+.             ....  ..... .+..++|+|  ||++|+++..|+.++||.+.
T Consensus       280 ~~~~~~v~~~d~~~g~~~~~~~-------------~~~~--~~~~~-~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          280 AQNECKVNAYDAETGRFVRTLF-------------VETD--KHYVE-PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             TSCEEEEEEEETTTCCEEEEEE-------------EEEC--SSCCC-CCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCeeEEEEEECCCCceeeEEE-------------EccC--CCeEC-ccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence                 89999998873221110             0000  00000 246789999  99999989889999999876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=8.3e-19  Score=185.31  Aligned_cols=206  Identities=9%  Similarity=0.077  Sum_probs=146.8

Q ss_pred             ccCceEEEEeCCCCCEEEEEeC-------CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCc-EEEEEeCCCcEE
Q 004290           49 HQGCVNAISWNSKGSLLISGSD-------DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVR  120 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~-------D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~-~l~s~s~dg~I~  120 (763)
                      ....+..++|+|+|++|++++.       ++.|.+||..+++.+..+.  ....+.+++|+|+  ++ ++++...++.|.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~d--g~~l~v~~~~~~~v~  114 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINNT--TQTLWFGNTVNSAVT  114 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEETT--TTEEEEEETTTTEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECCC--CCEEEEEecCCCEEE
Confidence            4467889999999998888774       5689999999999888873  2345788999999  56 555666689999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccC---------ceeEEEEecCCCCEEEEE-eCCCcEEEEECCCCCCCCCCCCCC
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTR---------RVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSH  190 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~sp~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~  190 (763)
                      +||..+++          .+..+..+..         .+.+++|+|++..++++. +.++.|.+||+.+++..       
T Consensus       115 ~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~-------  177 (353)
T 3vgz_A          115 AIDAKTGE----------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK-------  177 (353)
T ss_dssp             EEETTTCC----------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE-------
T ss_pred             EEeCCCCe----------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE-------
Confidence            99998642          2344443322         278899999554444444 35788999999876521       


Q ss_pred             cccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccc
Q 004290          191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  270 (763)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (763)
                             ..+           +.+...+.+++|+|+ ++++++++.++.|.+||+.+++.+..+...             
T Consensus       178 -------~~~-----------~~~~~~~~~~~~s~d-g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-------------  225 (353)
T 3vgz_A          178 -------TAI-----------QNTGKMSTGLALDSE-GKRLYTTNADGELITIDTADNKILSRKKLL-------------  225 (353)
T ss_dssp             -------EEE-----------CCCCTTCCCCEEETT-TTEEEEECTTSEEEEEETTTTEEEEEEECC-------------
T ss_pred             -------EEe-----------cCCCCccceEEECCC-CCEEEEEcCCCeEEEEECCCCeEEEEEEcC-------------
Confidence                   100           111223667899997 678999999999999999987644322110             


Q ss_pred             cccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCC
Q 004290          271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA  311 (763)
Q Consensus       271 ~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~  311 (763)
                         ..++.. .+..++|+|+|++|++++. ++.|.+||+.++
T Consensus       226 ---~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          226 ---DDGKEH-FFINISLDTARQRAFITDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             ---CSSSCC-CEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred             ---CCCCCc-ccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence               011222 4888999999998887776 599999999774

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=9.9e-20  Score=190.92  Aligned_cols=147  Identities=6%  Similarity=-0.029  Sum_probs=105.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCC-ceEEEEEeeCCCCcE-EEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDEL-VVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (763)
Q Consensus        63 ~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~-~V~~v~~~p~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (763)
                      ++|++++.++.|.+||+.+++.+..+..++.. .+.+++|+|+  ++. ++++..++.|.+||+.++.          .+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~v~~~~~~~v~~~d~~~~~----------~~   69 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTGE----------TL   69 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTCC----------EE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCC--CCEEEEEeCCCCeEEEEECCCCC----------eE
Confidence            47899999999999999999988887434322 4889999999  554 5666678999999998632          23


Q ss_pred             eeeec-----ccCceeEEEEecCCCCEEEEEe------------CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290          141 ALYQC-----HTRRVKKLAVEVGNPHVVWSAS------------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       141 ~~~~~-----h~~~v~~l~~sp~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                      ..+..     |...+..++|+| ++.++++++            .++.|.+||+.+++..            ..+.    
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------------~~~~----  132 (337)
T 1pby_B           70 GRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR------------KAFE----  132 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE------------EEEE----
T ss_pred             eeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEE------------EEEe----
Confidence            33321     123678899999 556666665            5799999999776421            0000    


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~  251 (763)
                                ....+.+++|+|+ +++|+++  ++.|++||+.+++..
T Consensus       133 ----------~~~~~~~~~~s~d-g~~l~~~--~~~i~~~d~~~~~~~  167 (337)
T 1pby_B          133 ----------APRQITMLAWARD-GSKLYGL--GRDLHVMDPEAGTLV  167 (337)
T ss_dssp             ----------CCSSCCCEEECTT-SSCEEEE--SSSEEEEETTTTEEE
T ss_pred             ----------CCCCcceeEECCC-CCEEEEe--CCeEEEEECCCCcEe
Confidence                      0123567889997 5667766  689999999987543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.84  E-value=6.3e-20  Score=214.76  Aligned_cols=201  Identities=10%  Similarity=0.020  Sum_probs=139.3

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      .|.+++|||||++|++++. +.|++||+.++.  .+..+ ..|...+.+++|+|+  |++|++++ ++.|++||+..+..
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SPD--G~~la~~~-~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSPK--GGFVSFIR-GRNLWVIDLASGRQ  184 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECTT--SSEEEEEE-TTEEEEEETTTTEE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCCC--CCEEEEEe-CCcEEEEecCCCCE
Confidence            3899999999999999887 899999999872  33345 577888999999999  79999887 56999999986321


Q ss_pred             CCCCCCCCCCceeeecccC----------------ceeEEEEecCCCCEEEEEeCCC-----------------------
Q 004290          130 RGLDDNAITPSALYQCHTR----------------RVKKLAVEVGNPHVVWSASEDG-----------------------  170 (763)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~----------------~v~~l~~sp~~~~~l~s~s~dg-----------------------  170 (763)
                                ......+..                .+..++|+| ++++|++++.|+                       
T Consensus       185 ----------~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~  253 (741)
T 2ecf_A          185 ----------MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY  253 (741)
T ss_dssp             ----------EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred             ----------EEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence                      111122222                257899999 556676776654                       


Q ss_pred             ----------cEEEEECCC-CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC---
Q 004290          171 ----------TLRQHDFRQ-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS---  236 (763)
Q Consensus       171 ----------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~---  236 (763)
                                .|++||+.+ ++.                       ..+.....+...+..++| |+ +++|++++.   
T Consensus       254 ~~~g~~~~~~~l~~~d~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~-pD-g~~l~~~~~~~~  308 (741)
T 2ecf_A          254 PAAGDANVQVKLGVISPAEQAQT-----------------------QWIDLGKEQDIYLARVNW-RD-PQHLSFQRQSRD  308 (741)
T ss_dssp             CBTTSCCCEEEEEEECSSTTCCC-----------------------EEECCCSCSSEEEEEEEE-EE-TTEEEEEEEETT
T ss_pred             CCCCCCCCeeEEEEEECCCCCce-----------------------EEecCCCCcceEEEEEEe-CC-CCEEEEEEeccc
Confidence                      566666655 431                       112111245678899999 97 677776653   


Q ss_pred             --CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          237 --DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       237 --Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                        +..|++||+.+++....+.              .+.  .+.-. .+..++|+|||+++++++.|+.+.||.++.
T Consensus       309 ~~~~~i~~~d~~~g~~~~~~~--------------~~~--~~~~~-~~~~~~~spdg~~~~~~~~~g~~~l~~~~~  367 (741)
T 2ecf_A          309 QKKLDLVEVTLASNQQRVLAH--------------ETS--PTWVP-LHNSLRFLDDGSILWSSERTGFQHLYRIDS  367 (741)
T ss_dssp             SSEEEEEEEETTTCCEEEEEE--------------EEC--SSCCC-CCSCCEECTTSCEEEEECTTSSCEEEEECS
T ss_pred             CCeEEEEEEECCCCceEEEEE--------------cCC--CCcCC-cCCceEECCCCeEEEEecCCCccEEEEEcC
Confidence              5789999999875322110              000  00000 246789999999888888899888887653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.84  E-value=2.2e-19  Score=217.66  Aligned_cols=201  Identities=10%  Similarity=0.063  Sum_probs=147.6

Q ss_pred             cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~-~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      ....+.+|...+.++.|+++ .++++++.|+.++||.+.. +.....+ ..|. .+...+|+|+  |+.|+++. ++.|+
T Consensus       195 ~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpD--G~~la~~~-~~~i~  268 (1045)
T 1k32_A          195 AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTD--GRRILFSK-GGSIY  268 (1045)
T ss_dssp             EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEES--SSCEEEEE-TTEEE
T ss_pred             CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCC--CCEEEEEe-CCEEE
Confidence            34556899999999999988 6777888899999998753 3344445 4454 4667899999  78888875 89999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeee-----------cccCceeEEEEe-cCCCCEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQ-----------CHTRRVKKLAVE-VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~-----------~h~~~v~~l~~s-p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  188 (763)
                      +||+....           +..+.           .|...+.+++|+ | ++..+++++ ++.|++|++..++..     
T Consensus       269 ~~d~~~~~-----------l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~-----  330 (1045)
T 1k32_A          269 IFNPDTEK-----------IEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVL-----  330 (1045)
T ss_dssp             EECTTTCC-----------EEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEE-----
T ss_pred             EecCCceE-----------eeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceE-----
Confidence            99984311           22222           255679999999 9 556676666 789999998765411     


Q ss_pred             CCcccceEEEecCCCceeeccCCCCCcc-ceEEEEEeCCCCcEEEEEeCCCcEE-EEeCCCCCCCcccCCCCCCCCcccc
Q 004290          189 SHQECRNILLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVGGSDAFAR-LYDRRMLPPLTSCQKRMSPPPCVNY  266 (763)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~~l~sgs~Dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~  266 (763)
                                        .   ...+.. .+..++|+ + ++.|+.++.+..+. +||+..++..              .
T Consensus       331 ------------------~---~~~~~~~~~~~~~~s-d-g~~l~~~s~~~~l~~~~d~~~~~~~--------------~  373 (1045)
T 1k32_A          331 ------------------K---VPEPLRIRYVRRGGD-T-KVAFIHGTREGDFLGIYDYRTGKAE--------------K  373 (1045)
T ss_dssp             ------------------E---CSCCSCEEEEEECSS-S-EEEEEEEETTEEEEEEEETTTCCEE--------------E
T ss_pred             ------------------E---ccCCCcceEEeeeEc-C-CCeEEEEECCCceEEEEECCCCCce--------------E
Confidence                              0   112333 68899999 6 68888888888888 9998765311              0


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +       .++.. .+..++|+|||++|++++.++.|++||+.++
T Consensus       374 l-------~~~~~-~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg  410 (1045)
T 1k32_A          374 F-------EENLG-NVFAMGVDRNGKFAVVANDRFEIMTVDLETG  410 (1045)
T ss_dssp             C-------CCCCC-SEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             e-------cCCcc-ceeeeEECCCCCEEEEECCCCeEEEEECCCC
Confidence            0       11222 5899999999999999999999999999874

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.82  E-value=5.1e-18  Score=179.05  Aligned_cols=196  Identities=12%  Similarity=0.146  Sum_probs=122.0

Q ss_pred             CCcEEEEeC--CCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---CCcEEEEECCCCCCCCCCCCCCCCceeeec
Q 004290           71 DTHINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQC  145 (763)
Q Consensus        71 D~~v~iWd~--~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  145 (763)
                      ++.|.+|++  .+++........+...+..++|+|+  ++ |++++.   ++.|.+|++..+..        ..+..+..
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spd--g~-l~~~~~~~~~~~v~~~~~~~g~~--------~~~~~~~~   83 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAK--DC-LYSVDKEDDEGGIAAWQIDGQTA--------HKLNTVVA   83 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTT--CE-EEEEEEETTEEEEEEEEEETTEE--------EEEEEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccC--Ce-EEEEEecCCCceEEEEEecCCcE--------EEeeeeec
Confidence            456777665  4565443221345577889999999  67 444443   68999999965321        22444456


Q ss_pred             ccCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEe
Q 004290          146 HTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS  224 (763)
Q Consensus       146 h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  224 (763)
                      +...+..++|+| ++++|++++ .++.|.+||+......           ..+...........  .......+.+++|+
T Consensus        84 ~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~-----------~~~~~~~~~~~~p~--~~~~~~~~~~~~~s  149 (347)
T 3hfq_A           84 PGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGAL-----------TLTDTVQHSGHGPR--PEQDGSHIHYTDLT  149 (347)
T ss_dssp             ESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCE-----------EEEEEEECCCCCSS--TTCSSCCEEEEEEC
T ss_pred             CCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCe-----------eecceeecCCCCCC--ccccCCCceEEEEC
Confidence            778899999999 556666666 7899999999643211           11111100000000  11123458899999


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCC-CCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCe
Q 004290          225 STRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEH  302 (763)
Q Consensus       225 p~~~~~l~sgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~-s~d~~  302 (763)
                      |+ ++++++...++.|++||+. +++ +...          ..+       .......+..++|+|||++|+++ ..++.
T Consensus       150 pd-g~l~v~~~~~~~v~~~~~~~~g~-~~~~----------~~~-------~~~~g~~p~~~~~spdg~~l~v~~~~~~~  210 (347)
T 3hfq_A          150 PD-NRLAVIDLGSDKVYVYNVSDAGQ-LSEQ----------SVL-------TMEAGFGPRHLVFSPDGQYAFLAGELSSQ  210 (347)
T ss_dssp             TT-SCEEEEETTTTEEEEEEECTTSC-EEEE----------EEE-------ECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CC-CcEEEEeCCCCEEEEEEECCCCc-EEEe----------eeE-------EcCCCCCCceEEECCCCCEEEEEeCCCCE
Confidence            98 5577777778999999998 332 1100          000       00111137789999999977765 45899


Q ss_pred             EEEEECCC
Q 004290          303 VYLMDVNH  310 (763)
Q Consensus       303 i~iwd~~~  310 (763)
                      |.+|++..
T Consensus       211 v~v~~~~~  218 (347)
T 3hfq_A          211 IASLKYDT  218 (347)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEecC
Confidence            99999875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.82  E-value=3.1e-18  Score=179.98  Aligned_cols=237  Identities=7%  Similarity=0.078  Sum_probs=152.3

Q ss_pred             ccccccccchhhh-hccccceeeccccCceEEEEeCCCCCEEEEEeCC-CcEEEEeCC--CCe--EEEEEccCCCCceEE
Q 004290           25 DVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLISGSDD-THINVWSYS--SRK--LLHSIETGHSANVFC   98 (763)
Q Consensus        25 ~~~~~~~~~~~~~-~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D-~~v~iWd~~--~~~--~~~~~~~~h~~~V~~   98 (763)
                      ..+..+++|+... .+.+.+..+ .|...+.+++|+|+|++|++++.+ +.|++|++.  +++  .+..+ ..+. .+.+
T Consensus        12 ~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~-~~~~   88 (343)
T 1ri6_A           12 PESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-ALPG-SLTH   88 (343)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-ECSS-CCSE
T ss_pred             CCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc-ccCC-CCcE
Confidence            4567788887422 233334443 477889999999999999888876 999999997  554  34444 3333 7899


Q ss_pred             EEEeeCCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-CCCcEEEEE
Q 004290           99 TKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHD  176 (763)
Q Consensus        99 v~~~p~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd  176 (763)
                      ++|+|+  +++|++++. ++.|.+||+..+..       ......+. ....+.+++|+|+ +.++++++ .++.|++||
T Consensus        89 ~~~s~d--g~~l~~~~~~~~~i~~~d~~~~~~-------~~~~~~~~-~~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d  157 (343)
T 1ri6_A           89 ISTDHQ--GQFVFVGSYNAGNVSVTRLEDGLP-------VGVVDVVE-GLDGCHSANISPD-NRTLWVPALKQDRICLFT  157 (343)
T ss_dssp             EEECTT--SSEEEEEETTTTEEEEEEEETTEE-------EEEEEEEC-CCTTBCCCEECTT-SSEEEEEEGGGTEEEEEE
T ss_pred             EEEcCC--CCEEEEEecCCCeEEEEECCCCcc-------cccccccc-CCCCceEEEECCC-CCEEEEecCCCCEEEEEE
Confidence            999999  677766654 88999999952110       12233343 3346899999995 45555555 899999999


Q ss_pred             CCC-CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEE-EEEeCCCcEEEEeCCC--CCCCc
Q 004290          177 FRQ-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRM--LPPLT  252 (763)
Q Consensus       177 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l-~sgs~Dg~i~iwd~~~--~~~~~  252 (763)
                      +.+ ++..            .+..      .....  .....+..++|+|+ ++++ +++..++.|++||+..  +... 
T Consensus       158 ~~~~~~~~------------~~~~------~~~~~--~~~~~~~~~~~~pd-g~~l~~~~~~~~~i~~~~~~~~~g~~~-  215 (343)
T 1ri6_A          158 VSDDGHLV------------AQDP------AEVTT--VEGAGPRHMVFHPN-EQYAYCVNELNSSVDVWELKDPHGNIE-  215 (343)
T ss_dssp             ECTTSCEE------------EEEE------EEEEC--STTCCEEEEEECTT-SSEEEEEETTTTEEEEEESSCTTSCCE-
T ss_pred             ecCCCcee------------eecc------ccccc--CCCCCcceEEECCC-CCEEEEEeCCCCEEEEEEecCCCCcEE-
Confidence            986 3210            0000      00000  11235778999998 5655 4555889999999964  2210 


Q ss_pred             ccCCCCCCCCcccccccccccCCCCC-ccceeEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q 004290          253 SCQKRMSPPPCVNYFCPMHLSEHGRS-SLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH  310 (763)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~  310 (763)
                      .          ....   .....++. ...+..++|+|+|++|+++. .++.|++|++..
T Consensus       216 ~----------~~~~---~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          216 C----------VQTL---DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  262 (343)
T ss_dssp             E----------EEEE---ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             E----------Eeec---cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence            0          0000   00001111 11477899999999888655 699999999874

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=8e-19  Score=199.19  Aligned_cols=197  Identities=9%  Similarity=0.009  Sum_probs=137.7

Q ss_pred             cCceEEEEeCCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---CCcEEEEECC
Q 004290           50 QGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLS  125 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~-D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---dg~I~iwd~~  125 (763)
                      ..+|++++|+|||++||+++. |++++||++.+++.. .+...+...+.++.|+|+   +++++++.   +...++|.+.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd---~~l~~~~~~~g~~~~~l~~~~   96 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG---RVILVRDVSKGAEQHALFKVN   96 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS---EEEEEEECSTTSCCEEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC---eEEEEeccCCCCcceEEEEEe
Confidence            557999999999999999887 999999999766654 442334368999999987   67777775   5566776665


Q ss_pred             C--CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290          126 R--FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       126 ~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                      .  ...          ...+... ..+...+|+|++..++++.+.++.+.+||+.+++..            .+.     
T Consensus        97 ~~~~g~----------~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~------------~l~-----  148 (582)
T 3o4h_A           97 TSRPGE----------EQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR------------ELA-----  148 (582)
T ss_dssp             TTSTTC----------CEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE------------EEE-----
T ss_pred             ccCCCc----------cccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE------------Eee-----
Confidence            3  111          1122212 234466888866555555555566669999876421            111     


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC----CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                            ..   ..  .+++|+|+ |++|+.++.+    +.|++||+.+++... +                    .++..
T Consensus       149 ------~~---~~--~~~~~spD-G~~la~~~~~~~~~~~i~~~d~~~g~~~~-l--------------------~~~~~  195 (582)
T 3o4h_A          149 ------RL---PG--FGFVSDIR-GDLIAGLGFFGGGRVSLFTSNLSSGGLRV-F--------------------DSGEG  195 (582)
T ss_dssp             ------EE---SS--CEEEEEEE-TTEEEEEEEEETTEEEEEEEETTTCCCEE-E--------------------CCSSC
T ss_pred             ------cC---CC--ceEEECCC-CCEEEEEEEcCCCCeEEEEEcCCCCCceE-e--------------------ecCCC
Confidence                  00   11  68899997 7899988877    789999998765321 1                    12333


Q ss_pred             cceeEEEEcCCCCEEEEEeCCC--eEEEEECCCCC
Q 004290          280 LHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNHAG  312 (763)
Q Consensus       280 ~~i~~v~~spdg~~l~~~s~d~--~i~iwd~~~~~  312 (763)
                       .+..++|||||++|+++..++  .|++||+.++.
T Consensus       196 -~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          196 -SFSSASISPGMKVTAGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             -EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred             -ccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence             489999999999999887888  89999998753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.82  E-value=3.7e-18  Score=178.72  Aligned_cols=229  Identities=9%  Similarity=0.058  Sum_probs=160.5

Q ss_pred             CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeC-CCcEEEEeCCCCeE-EEEEccCCCCceEEEE
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKL-LHSIETGHSANVFCTK  100 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~-D~~v~iWd~~~~~~-~~~~~~~h~~~V~~v~  100 (763)
                      ....+..|.+++  ..+.+.+..+..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+ ..+..++.+++
T Consensus        15 ~~~~~~~v~~~d--~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~   90 (331)
T 3u4y_A           15 VEQHLRRISFFS--TDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVD   90 (331)
T ss_dssp             EEGGGTEEEEEE--TTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEE
T ss_pred             EecCCCeEEEEe--CcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-ccCCCCccceE
Confidence            344567888887  45556667777667777 9999999997666555 89999999999887 6666 55666666699


Q ss_pred             EeeCCCCcEEEEEeCCC---cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc-EEEEE
Q 004290          101 FVPETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHD  176 (763)
Q Consensus       101 ~~p~~~~~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~-i~iwd  176 (763)
                      |+|+  +++|+++..++   .|.+||+..+          +.+..+. +...+.+++|+|++..++++...++. |.+|+
T Consensus        91 ~s~d--g~~l~~~~~~~~~~~i~v~d~~~~----------~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~  157 (331)
T 3u4y_A           91 ITPD--DQFAVTVTGLNHPFNMQSYSFLKN----------KFISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFK  157 (331)
T ss_dssp             ECTT--SSEEEECCCSSSSCEEEEEETTTT----------EEEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred             ECCC--CCEEEEecCCCCcccEEEEECCCC----------CeEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence            9999  78888555553   8999999863          2244444 34557899999966556667677788 99999


Q ss_pred             CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcE-EEEEeCCCcEEEEeCCCCCC---Cc
Q 004290          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL-LLVGGSDAFARLYDRRMLPP---LT  252 (763)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~-l~sgs~Dg~i~iwd~~~~~~---~~  252 (763)
                      +......              .+..   ...+    .....+..++|+|+ +++ ++++..++.|++||+.+++.   +.
T Consensus       158 ~~~~g~~--------------~~~~---~~~~----~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~d~~~~~~~~~~~  215 (331)
T 3u4y_A          158 IDADGVL--------------FDTG---QEFI----SGGTRPFNITFTPD-GNFAFVANLIGNSIGILETQNPENITLLN  215 (331)
T ss_dssp             ECTTCCE--------------EEEE---EEEE----CSSSSEEEEEECTT-SSEEEEEETTTTEEEEEECSSTTSCEEEE
T ss_pred             ECCCCcE--------------eecC---Cccc----cCCCCccceEECCC-CCEEEEEeCCCCeEEEEECCCCcccceee
Confidence            9854311              1100   0000    11234689999998 564 45555789999999988764   22


Q ss_pred             ccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCC
Q 004290          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG  312 (763)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~  312 (763)
                      .+.                    ..  ..+..++|+|+|++|+++.. ++.|.+||+.+++
T Consensus       216 ~~~--------------------~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~  254 (331)
T 3u4y_A          216 AVG--------------------TN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGT  254 (331)
T ss_dssp             EEE--------------------CS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred             ecc--------------------CC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence            211                    01  14778999999998877664 7899999998753

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.82  E-value=8.6e-19  Score=203.94  Aligned_cols=220  Identities=10%  Similarity=0.029  Sum_probs=133.2

Q ss_pred             hhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEE-EEEccCCC-----------------CceEE
Q 004290           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-HSIETGHS-----------------ANVFC   98 (763)
Q Consensus        37 ~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~-~~~~~~h~-----------------~~V~~   98 (763)
                      +...+....|..+  .+..+.|.  |..+++++.|+ | +||+.+++.+ ..+ ..|.                 ..|.+
T Consensus        14 ~~~~~~~~~~~~~--~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~v~~   86 (706)
T 2z3z_A           14 MPGGKEFYNFYPE--YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTR-FSAADLNALMPEGCKFQTTDAFPSFR   86 (706)
T ss_dssp             ----------------CTTCEEE--TTEEEEEETTE-E-EEEC-------CEE-EEHHHHHTTC-----------CCCEE
T ss_pred             cCCcccccccccc--cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEe-echhHhhhhccchhccccccccCcee
Confidence            3344455555554  35667888  66778888888 8 9999999873 333 2232                 46999


Q ss_pred             EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004290           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (763)
Q Consensus        99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~  178 (763)
                      ++|+|+  +.++++ . ++.|++||+.++.           ...+..+...+.+++|+| +++.|+++ .++.|++||+.
T Consensus        87 ~~~spd--~~~~~~-~-~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~  149 (706)
T 2z3z_A           87 TLDAGR--GLVVLF-T-QGGLVGFDMLARK-----------VTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGG  149 (706)
T ss_dssp             EEETTT--TEEEEE-E-TTEEEEEETTTTE-----------EEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECB
T ss_pred             EEECCC--CeEEEE-E-CCEEEEEECCCCc-----------eEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecC
Confidence            999998  455554 3 5999999998632           344555677899999999 55777774 67999999998


Q ss_pred             C-----CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe------------------
Q 004290          179 Q-----GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG------------------  235 (763)
Q Consensus       179 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs------------------  235 (763)
                      +     ++..........   .......        ....+...+.+++|+|+ +++|++++                  
T Consensus       150 ~~~~~~g~~~~~~~~~~~---~~~~g~~--------~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~  217 (706)
T 2z3z_A          150 KLGEGMSRAIAVTIDGTE---TLVYGQA--------VHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLE  217 (706)
T ss_dssp             CTTSCCCCCEESCSCCBT---TEEESSC--------CGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSS
T ss_pred             cccccCCCcEEeccCCCC---CeEcccc--------hhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCC
Confidence            7     542211100000   0000000        00011223578999998 68888887                  


Q ss_pred             ---------------CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC
Q 004290          236 ---------------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG  300 (763)
Q Consensus       236 ---------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d  300 (763)
                                     .+..|++||+.+++.....                  ...++.. .+..++|+|||++|++++.+
T Consensus       218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~------------------~~~~~~~-~~~~~~~spdg~~l~~~~~~  278 (706)
T 2z3z_A          218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ------------------TGEPKEK-FLTNLSWSPDENILYVAEVN  278 (706)
T ss_dssp             CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC------------------CCSCTTC-EEEEEEECTTSSEEEEEEEC
T ss_pred             CceEEeeCCCCCCCCCeeEEEEEECCCCceEeec------------------cCCCCce-eEeeEEEECCCCEEEEEEeC
Confidence                           4577999999876421110                  0011222 58999999999999998876


Q ss_pred             C-----eEEEEECCCC
Q 004290          301 E-----HVYLMDVNHA  311 (763)
Q Consensus       301 ~-----~i~iwd~~~~  311 (763)
                      +     .|++||+.++
T Consensus       279 ~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          279 RAQNECKVNAYDAETG  294 (706)
T ss_dssp             TTSCEEEEEEEETTTC
T ss_pred             CCCCeeEEEEEECCCC
Confidence            5     8999998875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.82  E-value=7.9e-19  Score=179.98  Aligned_cols=255  Identities=11%  Similarity=0.080  Sum_probs=175.7

Q ss_pred             CCCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEccCC-CCceEE
Q 004290           21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGH-SANVFC   98 (763)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~-~~~~~~~~~~h-~~~V~~   98 (763)
                      ..+...+..|.+|+..  ..+ ...+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++..... ..+ ...|.+
T Consensus        15 ~~~~~~~~~i~~~d~~--~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~   89 (297)
T 2ojh_A           15 GPGGSMRSSIEIFNIR--TRK-MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD-TGFATICNND   89 (297)
T ss_dssp             ---CCCCEEEEEEETT--TTE-EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC-CTTCCCBCSC
T ss_pred             cCCCCcceeEEEEeCC--CCc-eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec-cccccccccc
Confidence            3345677889998843  333 335566899999999999999999987 68999999998 7766555 444 478899


Q ss_pred             EEEeeCCCCcEEEEEe--CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004290           99 TKFVPETSDELVVSGA--GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (763)
Q Consensus        99 v~~~p~~~~~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd  176 (763)
                      ++|+|+  +++|++++  .++.++||.+....+         ....+..+ ..+..++|+|++..++++++.++.+++|+
T Consensus        90 ~~~spd--g~~l~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~  157 (297)
T 2ojh_A           90 HGISPD--GALYAISDKVEFGKSAIYLLPSTGG---------TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYS  157 (297)
T ss_dssp             CEECTT--SSEEEEEECTTTSSCEEEEEETTCC---------CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred             eEECCC--CCEEEEEEeCCCCcceEEEEECCCC---------ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEE
Confidence            999999  79999998  445666666643221         12333333 34889999995544555888999999998


Q ss_pred             CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-CCCcEEEEeCCC-CCCCccc
Q 004290          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRM-LPPLTSC  254 (763)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~~-~~~~~~~  254 (763)
                      +......                     .   .....+...+.+++|+|+ +++|++++ .++.+++|++.. ......+
T Consensus       158 ~~~~~~~---------------------~---~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~~~~~~~~~~~~~  212 (297)
T 2ojh_A          158 MDIDSGV---------------------E---TRLTHGEGRNDGPDYSPD-GRWIYFNSSRTGQMQIWRVRVDGSSVERI  212 (297)
T ss_dssp             EETTTCC---------------------E---EECCCSSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred             EECCCCc---------------------c---eEcccCCCccccceECCC-CCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence            6533210                     0   011123457899999997 56666555 589999999863 2221111


Q ss_pred             CCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCCccceEe--ecC
Q 004290          255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-----------EHVYLMDVNHAGGRAMRY--TVG  321 (763)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d-----------~~i~iwd~~~~~~~~~~~--~~~  321 (763)
                                          ..+.. .+..++|+|+|++|++++.+           +.|++||+.+++......  .+.
T Consensus       213 --------------------~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  271 (297)
T 2ojh_A          213 --------------------TDSAY-GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQ  271 (297)
T ss_dssp             --------------------CCCSE-EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEEST
T ss_pred             --------------------ecCCc-ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCC
Confidence                                11222 58999999999999988875           579999999865433332  445


Q ss_pred             CCCeeeeeccCCCCccc
Q 004290          322 DASKIMSFTPTLNGLEL  338 (763)
Q Consensus       322 ~~~~~~~~~p~~~~~~~  338 (763)
                      ..+..++|+|+.+.+..
T Consensus       272 ~~~~~~~~spdg~~l~~  288 (297)
T 2ojh_A          272 GTMNSPNWSPDGDEFAY  288 (297)
T ss_dssp             TTSCSCCBCTTSSEEEE
T ss_pred             cccccceECCCCCEEEE
Confidence            67778889988765543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.80  E-value=1.1e-18  Score=203.61  Aligned_cols=244  Identities=8%  Similarity=0.022  Sum_probs=152.1

Q ss_pred             cccccccchhhhhccccceeeccccC---ceEEEEeCCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEEc--cC
Q 004290           26 VNHSLQMHSSLVRRLSQERELEGHQG---CVNAISWNSKGSLLISGSDD---------THINVWSYSSRKLLHSIE--TG   91 (763)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~gH~~---~V~~l~fsp~g~~Lasgs~D---------~~v~iWd~~~~~~~~~~~--~~   91 (763)
                      .+..+.+|+  ..+.+....+.+|..   .|.+++|||||++||+++.+         +.|.+||+.+++. ..+.  .+
T Consensus        35 ~dg~i~~~d--~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~  111 (723)
T 1xfd_A           35 QKGTVRLWN--VETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEV  111 (723)
T ss_dssp             SSSCEEEBC--GGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTC
T ss_pred             CCCCEEEEE--CCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCcc
Confidence            456788887  455566677777765   49999999999999999875         6788999998876 3331  23


Q ss_pred             CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC------------------ceeEE
Q 004290           92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR------------------RVKKL  153 (763)
Q Consensus        92 h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~l  153 (763)
                      |...+..++|+|+  |+.|++++. +.|++||+..+..          ......+..                  .+.++
T Consensus       112 ~~~~~~~~~~SPd--G~~la~~~~-~~i~~~~~~~g~~----------~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~  178 (723)
T 1xfd_A          112 SNAKLQYAGWGPK--GQQLIFIFE-NNIYYCAHVGKQA----------IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (723)
T ss_dssp             CSCCCSBCCBCSS--TTCEEEEET-TEEEEESSSSSCC----------EEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             ccccccccEECCC--CCEEEEEEC-CeEEEEECCCCce----------EEEecCCCCCceECcccceeEEEEeccCcceE
Confidence            4555889999999  789999886 7999999986431          222222222                  23789


Q ss_pred             EEecCCCCEEEEEeCC-CcEEEEECCCCCCCCC----------CCCCCcccceEEEecCCCce-eeccCC---CCCccce
Q 004290          154 AVEVGNPHVVWSASED-GTLRQHDFRQGSSCPP----------AGSSHQECRNILLDLRCGAK-RSLADP---PKQTLSL  218 (763)
Q Consensus       154 ~~sp~~~~~l~s~s~d-g~i~iwd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~v  218 (763)
                      +|+| +++.|++++.| +.+.+|++........          ...........++++..+.. ..+...   ..+...+
T Consensus       179 ~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~  257 (723)
T 1xfd_A          179 WWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI  257 (723)
T ss_dssp             EECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred             EECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcccee
Confidence            9999 55777776654 4566666532211000          00000112334555544432 222111   1135678


Q ss_pred             EEEEEeCCCCcEEEEEeC----CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccce----eEEEEcCC
Q 004290          219 KSCDISSTRPHLLLVGGS----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL----THVTFSPN  290 (763)
Q Consensus       219 ~~i~~~p~~~~~l~sgs~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i----~~v~~spd  290 (763)
                      .+++|+|+ +++|++.+.    +..|++||+.+++....+.                    .+....+    ..++|+||
T Consensus       258 ~~~~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------------~~~~~~~~~~~~~~~~spd  316 (723)
T 1xfd_A          258 TMVKWATS-TKVAVTWLNRAQNVSILTLCDATTGVCTKKHE--------------------DESEAWLHRQNEEPVFSKD  316 (723)
T ss_dssp             EEEEESSS-SEEEEEEEETTSCEEEEEEEETTTCCEEEEEE--------------------EECSSCCCCCCCCCEECTT
T ss_pred             EEEEEeCC-CeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE--------------------eccCCEEeccCCCceEcCC
Confidence            99999997 677766653    3679999998875322110                    0000112    36899999


Q ss_pred             CCEEEEE--eCCC------eEEEEE
Q 004290          291 GEEVLLS--YSGE------HVYLMD  307 (763)
Q Consensus       291 g~~l~~~--s~d~------~i~iwd  307 (763)
                      |+.|+..  ..++      .|++||
T Consensus       317 g~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          317 GRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             SCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             CCeEEEEEecccCCCcceeEEEEEe
Confidence            9987764  4466      455555

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=2.9e-18  Score=180.76  Aligned_cols=158  Identities=11%  Similarity=0.061  Sum_probs=110.6

Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcE-EEEEeCCCcEEEEECCCCCCCCCC
Q 004290           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDEL-VVSGAGDAEVRLFNLSRFSGRGLD  133 (763)
Q Consensus        55 ~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~  133 (763)
                      .+++++++.++++++.+++|.+||+.+++.+..+..+....+..++|+|+  +++ ++++..++.|.+||+.++.     
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~~~v~~~~~~~i~~~d~~t~~-----   76 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTCK-----   76 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTTE-----
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCC--CCEEEEEeCCCCcEEEEeCCCCc-----
Confidence            45788899999999999999999999999888874333236789999999  564 4566678999999998632     


Q ss_pred             CCCCCCceeeecc------cCceeEEEEecCCCCEEEEEeCC------------CcEEEEECCCCCCCCCCCCCCcccce
Q 004290          134 DNAITPSALYQCH------TRRVKKLAVEVGNPHVVWSASED------------GTLRQHDFRQGSSCPPAGSSHQECRN  195 (763)
Q Consensus       134 ~~~~~~~~~~~~h------~~~v~~l~~sp~~~~~l~s~s~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~  195 (763)
                           ....+...      ...+..++|+| +++++++++.+            +.|.+||+.+++.....         
T Consensus        77 -----~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---------  141 (349)
T 1jmx_B           77 -----NTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV---------  141 (349)
T ss_dssp             -----EEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS---------
T ss_pred             -----EEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCcccccee---------
Confidence                 23333321      23378999999 55777777754            89999999875421000         


Q ss_pred             EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCc
Q 004290          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT  252 (763)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~  252 (763)
                      ...              .+...+.+++|+|+ ++ +++++.  .|++||+.+++.+.
T Consensus       142 ~~~--------------~~~~~~~~~~~s~d-g~-l~~~~~--~i~~~d~~~~~~~~  180 (349)
T 1jmx_B          142 RTF--------------PMPRQVYLMRAADD-GS-LYVAGP--DIYKMDVKTGKYTV  180 (349)
T ss_dssp             EEE--------------ECCSSCCCEEECTT-SC-EEEESS--SEEEECTTTCCEEE
T ss_pred             eec--------------cCCCcccceeECCC-Cc-EEEccC--cEEEEeCCCCceec
Confidence            000              01124778899998 56 555543  49999999876443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.78  E-value=1.9e-18  Score=187.43  Aligned_cols=218  Identities=11%  Similarity=0.072  Sum_probs=153.6

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC----------eEEEEE----ccCCCCceEEEEEeeCCCCcEEE---
Q 004290           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----------KLLHSI----ETGHSANVFCTKFVPETSDELVV---  111 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~----------~~~~~~----~~~h~~~V~~v~~~p~~~~~~l~---  111 (763)
                      ....++.|++++++.+|++++.|+ ++||+....          ..+...    ...+...|.+++|+|+  +++|+   
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd--g~~lav~~  111 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD--NLTLSACM  111 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT--SCEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC--CCEEEEEE
Confidence            345689999999999999999987 899875311          011111    0245678999999999  78888   


Q ss_pred             -EEeCCCcEEEEECCCCCCC-CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004290          112 -SGAGDAEVRLFNLSRFSGR-GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (763)
Q Consensus       112 -s~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  189 (763)
                       +|+.|+.|+|||+...... .........+..+.+|...|.+++|+|+++.+|++++.||+|++||++++...      
T Consensus       112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~------  185 (434)
T 2oit_A          112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV------  185 (434)
T ss_dssp             EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE------
T ss_pred             eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce------
Confidence             7889999999998753100 00000011245567799999999999976899999999999999999876311      


Q ss_pred             CcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccc
Q 004290          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (763)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  269 (763)
                                         .....|...|.+++|+|+ +++|++|+.||.|++||++ ++....+.              
T Consensus       186 -------------------~~~~~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~~~~~--------------  230 (434)
T 2oit_A          186 -------------------CATLPSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEKKVIP--------------  230 (434)
T ss_dssp             -------------------EEEECGGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEEEEEC--------------
T ss_pred             -------------------eeccCCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-Cccccccc--------------
Confidence                               011135678999999997 7899999999999999998 33222111              


Q ss_pred             ccccCC-CCCccceeEEEEcCCCCEEEEEe-CCC------eEEEEECCCC
Q 004290          270 MHLSEH-GRSSLHLTHVTFSPNGEEVLLSY-SGE------HVYLMDVNHA  311 (763)
Q Consensus       270 ~~~~~~-g~~~~~i~~v~~spdg~~l~~~s-~d~------~i~iwd~~~~  311 (763)
                      .+.... .|. ..|.+++|++++.++++.+ .||      .+++|++...
T Consensus       231 ~~~~~~~~~~-~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          231 CPPFYESDHP-VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CCTTCCTTSC-EEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCcccCCCCc-eeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            011001 122 2599999999988776544 343      3899999874

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.77  E-value=2.9e-17  Score=176.12  Aligned_cols=212  Identities=14%  Similarity=0.117  Sum_probs=141.8

Q ss_pred             cccceeeccccCceEE-----EEeCCCCCEEEEEeC-CCc--EEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEE
Q 004290           40 LSQERELEGHQGCVNA-----ISWNSKGSLLISGSD-DTH--INVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV  111 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~-----l~fsp~g~~Lasgs~-D~~--v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~  111 (763)
                      ...+..|..|...+..     .+|+|||++|+.++. ++.  |.+||+.+++..... .++...+..+.|+|+  ++.|+
T Consensus        20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~spd--g~~l~   96 (388)
T 3pe7_A           20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNTFGGFLSPD--DDALF   96 (388)
T ss_dssp             CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCSSSCEECTT--SSEEE
T ss_pred             CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCccceEEcCC--CCEEE
Confidence            4556777777766666     889999999998887 663  888899988876655 566666667889999  79999


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEE--EecCCCCEEEEE----------------------e
Q 004290          112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLA--VEVGNPHVVWSA----------------------S  167 (763)
Q Consensus       112 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~sp~~~~~l~s~----------------------s  167 (763)
                      .++.++.|++||+.++..          ...+..+...+....  ++| ++.+++..                      .
T Consensus        97 ~~~~~~~l~~~d~~~g~~----------~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T 3pe7_A           97 YVKDGRNLMRVDLATLEE----------NVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTK  165 (388)
T ss_dssp             EEETTTEEEEEETTTCCE----------EEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred             EEeCCCeEEEEECCCCcc----------eeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccC
Confidence            999999999999987431          233344444454444  377 55666532                      2


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeC-CCCcEEEEEeCC------CcE
Q 004290          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS-TRPHLLLVGGSD------AFA  240 (763)
Q Consensus       168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~~l~sgs~D------g~i  240 (763)
                      .+..|.+||+.+++..                       .+.   .+...+..++|+| + ++.|+....+      ..|
T Consensus       166 ~~~~l~~~d~~~g~~~-----------------------~l~---~~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~l  218 (388)
T 3pe7_A          166 PCCRLMRVDLKTGEST-----------------------VIL---QENQWLGHPIYRPYD-DSTVAFCHEGPHDLVDARM  218 (388)
T ss_dssp             CCEEEEEEETTTCCEE-----------------------EEE---EESSCEEEEEEETTE-EEEEEEEECSCTTTSSCSE
T ss_pred             CcceEEEEECCCCceE-----------------------Eee---cCCccccccEECCCC-CCEEEEEEecCCCCCcceE
Confidence            3467888888776411                       111   1223578899999 7 6777766653      367


Q ss_pred             EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC----eEEEEECCCCC
Q 004290          241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE----HVYLMDVNHAG  312 (763)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~----~i~iwd~~~~~  312 (763)
                      .++|+....... +                  . .+.....+..++|+|||+.|+..+. ++    .|++||+.+++
T Consensus       219 ~~~d~~~~~~~~-l------------------~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~  275 (388)
T 3pe7_A          219 WLINEDGTNMRK-V------------------K-THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE  275 (388)
T ss_dssp             EEEETTSCCCEE-S------------------C-CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred             EEEeCCCCceEE-e------------------e-eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence            888876543211 0                  0 1111124788999999998866544 22    39999988753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.77  E-value=7.1e-17  Score=170.25  Aligned_cols=236  Identities=10%  Similarity=0.049  Sum_probs=147.6

Q ss_pred             ccccccchhhhhccccce-eeccccCceEEEEeCCCCCEEEEEeC---CCcEEEEeCCCCe--EEEEEccCCCCceEEEE
Q 004290           27 NHSLQMHSSLVRRLSQER-ELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRK--LLHSIETGHSANVFCTK  100 (763)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~-~l~gH~~~V~~l~fsp~g~~Lasgs~---D~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~  100 (763)
                      .+.+.+|.....+.++.. ....+...+..++|+|+|+ |++++.   ++.|.+||+.+++  .+..+ ..+...+..++
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a   92 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVA   92 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEE
Confidence            345556654444333322 2334567788999999999 554443   6899999998776  34443 35677889999


Q ss_pred             EeeCCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCCCceeeec---------ccCceeEEEEecCCCCEEEEEeCCC
Q 004290          101 FVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQC---------HTRRVKKLAVEVGNPHVVWSASEDG  170 (763)
Q Consensus       101 ~~p~~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~---------h~~~v~~l~~sp~~~~~l~s~s~dg  170 (763)
                      |+|+  +++|++++ .++.|.+|++... +..      ..+..+..         +...+.+++|+|++ +++++...++
T Consensus        93 ~spd--g~~l~~~~~~~~~v~v~~~~~~-g~~------~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~  162 (347)
T 3hfq_A           93 VDEA--RQLVYSANYHKGTAEVMKIAAD-GAL------TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSD  162 (347)
T ss_dssp             EETT--TTEEEEEETTTTEEEEEEECTT-SCE------EEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTT
T ss_pred             ECCC--CCEEEEEeCCCCEEEEEEeCCC-CCe------eecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCC
Confidence            9999  78888877 6899999999631 110      11222211         22348899999955 5777777789


Q ss_pred             cEEEEECCC-CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEE-EEEeCCCcEEEEeCCC-
Q 004290          171 TLRQHDFRQ-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRM-  247 (763)
Q Consensus       171 ~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l-~sgs~Dg~i~iwd~~~-  247 (763)
                      .|++||+.. ++..            .+..        +..  .....+..++|+|+ ++++ +++..++.|++|++.. 
T Consensus       163 ~v~~~~~~~~g~~~------------~~~~--------~~~--~~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~  219 (347)
T 3hfq_A          163 KVYVYNVSDAGQLS------------EQSV--------LTM--EAGFGPRHLVFSPD-GQYAFLAGELSSQIASLKYDTQ  219 (347)
T ss_dssp             EEEEEEECTTSCEE------------EEEE--------EEC--CTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEEETT
T ss_pred             EEEEEEECCCCcEE------------Eeee--------EEc--CCCCCCceEEECCC-CCEEEEEeCCCCEEEEEEecCC
Confidence            999999983 3210            0000        000  01124678999998 5644 4566789999999874 


Q ss_pred             -CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCeEEEEECCC
Q 004290          248 -LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH  310 (763)
Q Consensus       248 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~-s~d~~i~iwd~~~  310 (763)
                       ++.. .          +.....  ..........+..++|+|||++|+++ ..++.|.+|++..
T Consensus       220 ~g~~~-~----------~~~~~~--~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          220 TGAFT-Q----------LGIVKT--IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             TTEEE-E----------EEEEES--SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             CCceE-E----------eeeeee--cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence             2210 0          000000  00000001248899999999988554 5589999999864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.76  E-value=4.6e-16  Score=164.99  Aligned_cols=242  Identities=6%  Similarity=0.031  Sum_probs=146.2

Q ss_pred             ccccccchhhhhc--cccceeeccccCceEEEEeCCCCCEEEEEeCC----CcEEEEeCCC--CeE--EEEEccCCCCce
Q 004290           27 NHSLQMHSSLVRR--LSQERELEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSS--RKL--LHSIETGHSANV   96 (763)
Q Consensus        27 ~~~~~~~~~~~~~--~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D----~~v~iWd~~~--~~~--~~~~~~~h~~~V   96 (763)
                      +..|.+|....++  ++.+..+  |...+..++|+|+|++|++++.+    +.|.+|++..  ++.  +..+ ..+...+
T Consensus        26 ~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p  102 (361)
T 3scy_A           26 SKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADP  102 (361)
T ss_dssp             CCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCE
T ss_pred             CCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCc
Confidence            4566676543333  3334444  77788899999999999999886    7999998865  442  3333 3355667


Q ss_pred             EEEEEeeCCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCCCceee----------ecccCceeEEEEecCCCCEEEE
Q 004290           97 FCTKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALY----------QCHTRRVKKLAVEVGNPHVVWS  165 (763)
Q Consensus        97 ~~v~~~p~~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~----------~~h~~~v~~l~~sp~~~~~l~s  165 (763)
                      ..+++  +  +++|++++ .++.|.+|++.......      ......          ..+...+.+++|+|++..++++
T Consensus       103 ~~~~~--d--g~~l~~~~~~~~~v~~~~~~~~g~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~  172 (361)
T 3scy_A          103 CYLTT--N--GKNIVTANYSGGSITVFPIGQDGALL------PASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLAD  172 (361)
T ss_dssp             EEEEE--C--SSEEEEEETTTTEEEEEEBCTTSCBC------SCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEE
T ss_pred             EEEEE--C--CCEEEEEECCCCEEEEEEeCCCCcCc------ccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEE
Confidence            77887  5  56666665 58899999997522110      001110          1123346889999954335555


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-CCCcEEEEe
Q 004290          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYD  244 (763)
Q Consensus       166 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd  244 (763)
                      ...++.|.+|++.......................            .....+..++|+|+ ++++++++ .++.|.+||
T Consensus       173 ~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~  239 (361)
T 3scy_A          173 DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV------------APGSGPRHLIFNSD-GKFAYLINEIGGTVIAFR  239 (361)
T ss_dssp             ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC------------CTTCCEEEEEECTT-SSEEEEEETTTCEEEEEE
T ss_pred             eCCCCEEEEEEEcCCCCcccccceeecccccceec------------CCCCCCeEEEEcCC-CCEEEEEcCCCCeEEEEE
Confidence            55689999999876531000000000000000000            11234678999998 67776666 689999999


Q ss_pred             CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC--CeEEEEECCC
Q 004290          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--EHVYLMDVNH  310 (763)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d--~~i~iwd~~~  310 (763)
                      +.++....           +...   ... ..+.. ....++|+|||++|+++..+  +.|.+|++..
T Consensus       240 ~~~g~~~~-----------~~~~---~~~-~~~~~-~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~  291 (361)
T 3scy_A          240 YADGMLDE-----------IQTV---AAD-TVNAQ-GSGDIHLSPDGKYLYASNRLKADGVAIFKVDE  291 (361)
T ss_dssp             EETTEEEE-----------EEEE---ESC-SSCCC-CEEEEEECTTSSEEEEEECSSSCEEEEEEECT
T ss_pred             ecCCceEE-----------eEEE---ecC-CCCCC-CcccEEECCCCCEEEEECCCCCCEEEEEEEcC
Confidence            98653110           0000   000 01111 36899999999999777654  8999999864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.76  E-value=2e-16  Score=167.84  Aligned_cols=214  Identities=13%  Similarity=0.111  Sum_probs=127.7

Q ss_pred             CCCEEEEEe----CCCcEEEEeC--CCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC----CcEEEEECCCCCCC
Q 004290           61 KGSLLISGS----DDTHINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD----AEVRLFNLSRFSGR  130 (763)
Q Consensus        61 ~g~~Lasgs----~D~~v~iWd~--~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d----g~I~iwd~~~~~~~  130 (763)
                      ...+++.|+    .++.|.+|.+  .+++....... +...+..++|+|+  +++|++++.+    +.|.+|++....+.
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spd--g~~l~~~~~~~~~~~~v~~~~~~~~~g~   88 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSAD--GKFVYSVNEFSKDQAAVSAFAFDKEKGT   88 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTT--SSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCC--CCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence            344566664    3568888866  45654433322 6677889999999  7889988876    79999998753221


Q ss_pred             CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccC
Q 004290          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (763)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (763)
                      .      ..+.....+...+..+++  ++..++++...++.|.+|++.........        ..........   ...
T Consensus        89 ~------~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~--------~~~~~~~g~~---~~~  149 (361)
T 3scy_A           89 L------HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPA--------SDVIEFKGSG---PDK  149 (361)
T ss_dssp             E------EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSC--------SEEEECCCCC---SCT
T ss_pred             E------EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccc--------ceeEEccCCC---CCc
Confidence            1      223344445566777887  34334444446889999999764422111        0000000000   000


Q ss_pred             CCCCccceEEEEEeCCCCcEEEE-EeCCCcEEEEeCCCCCC------CcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290          211 PPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPP------LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (763)
Q Consensus       211 ~~~~~~~v~~i~~~p~~~~~l~s-gs~Dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  283 (763)
                      ...+...+.+++|+|+ ++++++ ...++.|++|++.....      +....       ....     .. . .....+.
T Consensus       150 ~~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~-------~~~~-----~~-~-~~~~~~~  214 (361)
T 3scy_A          150 ERQTMPHLHCVRITPD-GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG-------TPEA-----FK-V-APGSGPR  214 (361)
T ss_dssp             TTCSSCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE-------EEEE-----EE-C-CTTCCEE
T ss_pred             cccCCCcceEEEECCC-CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc-------cccc-----ee-c-CCCCCCe
Confidence            1112334688999998 565544 44589999999875431      10000       0000     00 0 1111478


Q ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEECCCC
Q 004290          284 HVTFSPNGEEVLLSY-SGEHVYLMDVNHA  311 (763)
Q Consensus       284 ~v~~spdg~~l~~~s-~d~~i~iwd~~~~  311 (763)
                      .++|+|||++|++++ .++.|.+|++.++
T Consensus       215 ~~~~spdg~~l~v~~~~~~~v~v~~~~~g  243 (361)
T 3scy_A          215 HLIFNSDGKFAYLINEIGGTVIAFRYADG  243 (361)
T ss_dssp             EEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred             EEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence            899999999888887 5899999998863

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.76  E-value=1.4e-17  Score=194.08  Aligned_cols=211  Identities=10%  Similarity=0.045  Sum_probs=136.7

Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCC---ceEEEEEeeCCCCcEEEEEeC---------CCcEEEE
Q 004290           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAG---------DAEVRLF  122 (763)
Q Consensus        55 ~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~---~V~~v~~~p~~~~~~l~s~s~---------dg~I~iw  122 (763)
                      +++|+|+|+++++ +.|++|++||+.+++....+ .+|..   .+.+++|+|+  |++|++++.         ++.|++|
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpD--g~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPD--RQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTT--SSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCC--CCeEEEEecCceeEEeecceEEEEE
Confidence            7899999976655 46999999999999877666 44443   3899999999  799998876         7899999


Q ss_pred             ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (763)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (763)
                      |+.++....        ...+   ...+..++|+| +++.|+.+. ++.|++||+.+++.......++.  ..++     
T Consensus        96 d~~~g~~~~--------~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~--~~v~-----  155 (719)
T 1z68_A           96 DLSNGEFVR--------GNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE--NKIF-----  155 (719)
T ss_dssp             ETTTTEECC--------SSCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBT--TTEE-----
T ss_pred             ECCCCcccc--------ceec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc--CCeE-----
Confidence            998643100        0112   24688999999 556776664 78999999987753211111100  0000     


Q ss_pred             CceeeccCCCCCc---------cceEEEEEeCCCCcEEEEEeCCC----------------------------------c
Q 004290          203 GAKRSLADPPKQT---------LSLKSCDISSTRPHLLLVGGSDA----------------------------------F  239 (763)
Q Consensus       203 ~~~~~~~~~~~~~---------~~v~~i~~~p~~~~~l~sgs~Dg----------------------------------~  239 (763)
                               .++.         ....+++|+|+ +++|+.++.|.                                  .
T Consensus       156 ---------~g~~~~v~~ee~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~  225 (719)
T 1z68_A          156 ---------NGIPDWVYEEEMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVR  225 (719)
T ss_dssp             ---------ESSCCHHHHHHTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEE
T ss_pred             ---------cccccceeeeecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeE
Confidence                     0111         11258999998 78898887652                                  6


Q ss_pred             EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC----CeEEEEE----CCCC
Q 004290          240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMD----VNHA  311 (763)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d----~~i~iwd----~~~~  311 (763)
                      |++||+.+++....+          ....+..+  .++.. .+..++|+||++++++....    ..|++||    +.++
T Consensus       226 l~~~d~~~~~~~~~~----------~~~~~~~~--~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g  292 (719)
T 1z68_A          226 IFIIDTTYPAYVGPQ----------EVPVPAMI--ASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW  292 (719)
T ss_dssp             EEEEESSCHHHHCCE----------ECCCCHHH--HTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred             EEEEECCCCCcccee----------EccCCccC--CCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence            888888765421000          00000001  12333 58999999998877664432    3588899    7665


Q ss_pred             C
Q 004290          312 G  312 (763)
Q Consensus       312 ~  312 (763)
                      .
T Consensus       293 ~  293 (719)
T 1z68_A          293 D  293 (719)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.74  E-value=2e-17  Score=187.72  Aligned_cols=63  Identities=8%  Similarity=0.005  Sum_probs=59.9

Q ss_pred             ccCCCCEEEEecCCC--cEEEEEcCcCcEEEEEecCCcceEEEE--------eeCCCCeEEEEeCCCcEEEEcC
Q 004290          635 LGQRGDYIASGSDDG--RWFIWEKQTGRLIKMLLGDEAVVNCVQ--------CHPFDCVVATSGIDNTIKIWTP  698 (763)
Q Consensus       635 ~s~d~~~l~sgs~Dg--~i~iWd~~tg~~~~~l~gH~~~V~~v~--------~sp~~~~laS~s~D~~IrvW~~  698 (763)
                      |||||++|++++.|+  .|++||++++++. .+.+|...|..++        |+|++.++++++.|++++||++
T Consensus       202 ~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          202 ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            999999999988999  9999999999998 8899998888888        9999999999999999999999

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.72  E-value=1.6e-16  Score=172.35  Aligned_cols=219  Identities=10%  Similarity=0.012  Sum_probs=146.3

Q ss_pred             ccCceEEEEeCCCCCEEE----EEeCCCcEEEEeCCCC--------eE---EEEEccCCCCceEEEEEeeCCCCcEEEEE
Q 004290           49 HQGCVNAISWNSKGSLLI----SGSDDTHINVWSYSSR--------KL---LHSIETGHSANVFCTKFVPETSDELVVSG  113 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~La----sgs~D~~v~iWd~~~~--------~~---~~~~~~~h~~~V~~v~~~p~~~~~~l~s~  113 (763)
                      |...|++++|+|+|++||    +|+.|++|+|||+.++        +.   +..+ .+|...|.+++|+|+. +.+|+++
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~-~~~las~  168 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-KDAGGMVIDMKWNPTV-PSMVAVC  168 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-CSGGGSEEEEEECSSC-TTEEEEE
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-CCCCCceEEEEECCCC-CCEEEEE
Confidence            567899999999999999    8889999999998654        21   3333 6899999999999984 6899999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004290          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (763)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  193 (763)
                      +.||+|++||+++.          .......+|...|.+++|+| ++.+|++|+.||+|++||++ ++..          
T Consensus       169 s~Dg~v~iwD~~~~----------~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~----------  226 (434)
T 2oit_A          169 LADGSIAVLQVTET----------VKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEK----------  226 (434)
T ss_dssp             ETTSCEEEEEESSS----------EEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEE----------
T ss_pred             ECCCeEEEEEcCCC----------cceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-Cccc----------
Confidence            99999999999863          12444567899999999999 57899999999999999998 3211          


Q ss_pred             ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEE-EeCCC------cEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004290          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDA------FARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (763)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~s-gs~Dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (763)
                        ..+...      ......|...|.+++|+++ ..++++ .+.||      .+++||++........        ....
T Consensus       227 --~~~~~~------~~~~~~~~~~v~~v~w~~~-~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~--------~~~~  289 (434)
T 2oit_A          227 --KVIPCP------PFYESDHPVRVLDVLWIGT-YVFAIVYAAADGTLETSPDVVMALLPKKEEKHPE--------IFVN  289 (434)
T ss_dssp             --EEECCC------TTCCTTSCEEEEEEEEEET-TEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCC--------EEEE
T ss_pred             --ccccCC------cccCCCCceeEEEEEEecC-ceEEEEEccCCCccCCCCceEEEEeccCCCCCCc--------ceEe
Confidence              000000      0001134558999999996 444433 33443      3899999865321100        0011


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECC
Q 004290          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVN  309 (763)
Q Consensus       267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~  309 (763)
                      +........+.+. +-..+.+-++.+++++++. ...|.+....
T Consensus       290 ~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          290 FMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             CCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             cccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEec
Confidence            1010000011222 2224445577777777766 6667777643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.72  E-value=2.2e-16  Score=165.32  Aligned_cols=246  Identities=11%  Similarity=0.118  Sum_probs=166.5

Q ss_pred             ccccccccchhhhhccccceeecc-ccC-ceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCC----CCceE
Q 004290           25 DVNHSLQMHSSLVRRLSQERELEG-HQG-CVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGH----SANVF   97 (763)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~l~g-H~~-~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h----~~~V~   97 (763)
                      ..+..|.+++  ..+.+.+..+.. +.. .+..++|+|+|++| ++++.++.|.+||+.+++.+..+..++    ...+.
T Consensus         8 ~~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~   85 (337)
T 1pby_B            8 ARPDKLVVID--TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF   85 (337)
T ss_dssp             ETTTEEEEEE--TTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT
T ss_pred             CCCCeEEEEE--CCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc
Confidence            3456777777  345556666653 222 48899999999765 556678899999999999887774333    22677


Q ss_pred             EEEEeeCCCCcEEEEEe------------CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEE
Q 004290           98 CTKFVPETSDELVVSGA------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  165 (763)
Q Consensus        98 ~v~~~p~~~~~~l~s~s------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s  165 (763)
                      +++|+|+  +++|++++            .++.|.+||+.++.          .+..+. ....+.+++|+|+ +.++++
T Consensus        86 ~~~~s~d--g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~-~~~~~~~~~~s~d-g~~l~~  151 (337)
T 1pby_B           86 GAALSPD--GKTLAIYESPVRLELTHFEVQPTRVALYDAETLS----------RRKAFE-APRQITMLAWARD-GSKLYG  151 (337)
T ss_dssp             CEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE----------EEEEEE-CCSSCCCEEECTT-SSCEEE
T ss_pred             ceEECCC--CCEEEEEecccccccccccccCceEEEEECCCCc----------EEEEEe-CCCCcceeEECCC-CCEEEE
Confidence            8999999  78888876            57999999998632          234443 2456888999995 455555


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCC--------cc----------c------------------------ceEEEecCCC
Q 004290          166 ASEDGTLRQHDFRQGSSCPPAGSSH--------QE----------C------------------------RNILLDLRCG  203 (763)
Q Consensus       166 ~s~dg~i~iwd~~~~~~~~~~~~~~--------~~----------~------------------------~~~~~~~~~~  203 (763)
                      +  ++.|++||+.+++.........        ..          .                        ...++++..+
T Consensus       152 ~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  229 (337)
T 1pby_B          152 L--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             E--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             e--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence            5  6899999998775431100000        00          0                        1234454444


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  283 (763)
                      ... ......+...+.+++|+|+ +++++++  ++.|++||+.+++.+..+.                   . .  ..+.
T Consensus       230 ~~~-~~~~~~~~~~~~~~~~s~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~-------------------~-~--~~~~  283 (337)
T 1pby_B          230 EMA-MREVRIMDVFYFSTAVNPA-KTRAFGA--YNVLESFDLEKNASIKRVP-------------------L-P--HSYY  283 (337)
T ss_dssp             CEE-EEEEEECSSCEEEEEECTT-SSEEEEE--ESEEEEEETTTTEEEEEEE-------------------C-S--SCCC
T ss_pred             Cce-EeecCCCCCceeeEEECCC-CCEEEEe--CCeEEEEECCCCcCcceec-------------------C-C--Ccee
Confidence            332 1111223345778999997 6788877  7999999998765432221                   0 1  1378


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCCcc
Q 004290          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  314 (763)
Q Consensus       284 ~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~  314 (763)
                      +++|+|+|++|++++.++.|++||+.+++..
T Consensus       284 ~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             eEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence            8999999999999988999999999986543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.71  E-value=1.2e-15  Score=160.98  Aligned_cols=249  Identities=9%  Similarity=0.043  Sum_probs=172.8

Q ss_pred             ccccccchhhhhccccceeeccccCceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCCCC--------ceE
Q 004290           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSA--------NVF   97 (763)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h~~--------~V~   97 (763)
                      +..+.+++  ..+.+.+..+.. ...+..++|+|+|++| +++..++.|.+||..+++.+..+..++..        .+.
T Consensus        68 ~~~v~~~d--~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (353)
T 3vgz_A           68 GGVVYRLD--PVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPR  144 (353)
T ss_dssp             SEEEEEEC--TTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEE
T ss_pred             CccEEEEc--CCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCc
Confidence            34566666  445556666654 3457889999999955 45566899999999999988887432222        278


Q ss_pred             EEEEeeCCCCcEEEEEe--CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004290           98 CTKFVPETSDELVVSGA--GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (763)
Q Consensus        98 ~v~~~p~~~~~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iw  175 (763)
                      +++|+|+  ++++++++  .++.|.+||..+.          +....+..+...+.+++|+| ++.++++++.++.|.+|
T Consensus       145 ~~~~s~d--g~~l~~~~~~~~~~i~~~d~~~~----------~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~  211 (353)
T 3vgz_A          145 ELVADDA--TNTVYISGIGKESVIWVVDGGNI----------KLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITI  211 (353)
T ss_dssp             EEEEETT--TTEEEEEEESSSCEEEEEETTTT----------EEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEE
T ss_pred             eEEECCC--CCEEEEEecCCCceEEEEcCCCC----------ceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEE
Confidence            9999999  67666655  4788999999863          23445554566688999999 55778888889999999


Q ss_pred             ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-CCCcEEEEeCCCCCCCccc
Q 004290          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSC  254 (763)
Q Consensus       176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~~~~~~~~~  254 (763)
                      |+.+++..            .....         ...++...+.+++|+|+ ++++++++ .++.|.+||+.+++.+..+
T Consensus       212 d~~~~~~~------------~~~~~---------~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~  269 (353)
T 3vgz_A          212 DTADNKIL------------SRKKL---------LDDGKEHFFINISLDTA-RQRAFITDSKAAEVLVVDTRNGNILAKV  269 (353)
T ss_dssp             ETTTTEEE------------EEEEC---------CCSSSCCCEEEEEEETT-TTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred             ECCCCeEE------------EEEEc---------CCCCCCcccceEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            99877521            00100         01123446788999998 45555554 5599999999887644322


Q ss_pred             CCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004290          255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (763)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (763)
                      ..                   +    ....++|+|+|++|+++. .++.|.+||+.+++ .......+..+..++|+|+.
T Consensus       270 ~~-------------------~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~s~dg  325 (353)
T 3vgz_A          270 AA-------------------P----ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK-VVKTFDTPTHPNSLALSADG  325 (353)
T ss_dssp             EC-------------------S----SCCCEEEETTTTEEEEEETTTTEEEEEETTTTE-EEEEEECCSEEEEEEECTTS
T ss_pred             Ec-------------------C----CCceEEECCCCCEEEEEECCCCeEEEEECCCCe-EEEEEecCCCCCeEEEcCCC
Confidence            10                   0    124589999999777666 59999999998854 33344445567788999987


Q ss_pred             CCcc
Q 004290          334 NGLE  337 (763)
Q Consensus       334 ~~~~  337 (763)
                      +.+.
T Consensus       326 ~~l~  329 (353)
T 3vgz_A          326 KTLY  329 (353)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            6543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.67  E-value=6.2e-16  Score=166.00  Aligned_cols=211  Identities=10%  Similarity=0.029  Sum_probs=127.8

Q ss_pred             ccceeeccccC-----ceEEEEeCCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEE
Q 004290           41 SQERELEGHQG-----CVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVS  112 (763)
Q Consensus        41 ~~~~~l~gH~~-----~V~~l~fsp~g~~Lasgs~D---~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s  112 (763)
                      +.+..|..+..     .+..++|+|||++|+.....   ..|.+||+.+++..... .++......+.|+|+  ++.|+.
T Consensus        21 ~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~spd--g~~l~~   97 (396)
T 3c5m_A           21 VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-EGKGDNTFGGFISTD--ERAFFY   97 (396)
T ss_dssp             CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-CSSCBCTTTCEECTT--SSEEEE
T ss_pred             cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-cCCCCccccceECCC--CCEEEE
Confidence            34455554433     37889999999998877543   46888999888765433 333333334789999  799999


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeE-------------------EEEecCCCCEEEEE-----eC
Q 004290          113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK-------------------LAVEVGNPHVVWSA-----SE  168 (763)
Q Consensus       113 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-------------------l~~sp~~~~~l~s~-----s~  168 (763)
                      ++.++.|++||+..+..          ......+......                   +.|+|+ +..++.+     ..
T Consensus        98 ~~~~~~l~~~d~~~~~~----------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd-g~~~~~~~~~~~~~  166 (396)
T 3c5m_A           98 VKNELNLMKVDLETLEE----------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL-TSWEKFAEFYHTNP  166 (396)
T ss_dssp             EETTTEEEEEETTTCCE----------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC-CSHHHHHHHHHTCC
T ss_pred             EEcCCcEEEEECCCCCc----------EEEEecccccCCCCCEEEeccCCccccccccccccCCC-CcceeeeeeccCCC
Confidence            99999999999986321          2222222221111                   234553 2333222     34


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC------CcEEE
Q 004290          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------AFARL  242 (763)
Q Consensus       169 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D------g~i~i  242 (763)
                      +..|++||+.+++..                       .+.   .+...+..+.|+|+++..|+..+.+      ..|.+
T Consensus       167 ~~~l~~~d~~~g~~~-----------------------~~~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~  220 (396)
T 3c5m_A          167 TCRLIKVDIETGELE-----------------------VIH---QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL  220 (396)
T ss_dssp             CEEEEEEETTTCCEE-----------------------EEE---EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred             cceEEEEECCCCcEE-----------------------eec---cCCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence            567888887765411                       111   1234578899999335666655543      35888


Q ss_pred             EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 004290          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-----EHVYLMDVNHA  311 (763)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d-----~~i~iwd~~~~  311 (763)
                      ||+..++... +                  . .......+..++|+|||++|+.++.+     +.|++||+.++
T Consensus       221 ~d~~~~~~~~-l------------------~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          221 VNEDGSNVRK-I------------------K-EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             EETTSCCCEE-S------------------S-CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             EECCCCceeE-e------------------e-ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence            8876543111 0                  0 00111248889999999988777653     44888888764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.66  E-value=4.8e-15  Score=170.87  Aligned_cols=208  Identities=10%  Similarity=-0.003  Sum_probs=136.6

Q ss_pred             eeeccccCceEEEEeCCCCCEEEEE--eCCCcEEEEeCCCCeEEEEEccCCCCceE---------EEEEe--eCCCCcE-
Q 004290           44 RELEGHQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVF---------CTKFV--PETSDEL-  109 (763)
Q Consensus        44 ~~l~gH~~~V~~l~fsp~g~~Lasg--s~D~~v~iWd~~~~~~~~~~~~~h~~~V~---------~v~~~--p~~~~~~-  109 (763)
                      ..+.+|...|..++|++++-++++.  +.++...||....+.....+ ..|...+.         ...|+  |+  ++. 
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SPD--g~~~   93 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRPA--GGPL   93 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCSS--SSCE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeecC--CCeE
Confidence            3466899999999999887777777  66889999996555555566 56666666         66676  88  566 


Q ss_pred             EEEEeC-CCcEEEEECC--C-CCCCCCCCCCCCCceeeec-----ccCceeEEEEecCCCCEEEEEeCC----------C
Q 004290          110 VVSGAG-DAEVRLFNLS--R-FSGRGLDDNAITPSALYQC-----HTRRVKKLAVEVGNPHVVWSASED----------G  170 (763)
Q Consensus       110 l~s~s~-dg~I~iwd~~--~-~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~~l~s~s~d----------g  170 (763)
                      |+.++. +..|.+|++.  . +.           ...+..     |...+..++|+| +++.|++++.+          .
T Consensus        94 la~~~~~~~~l~~~~~~~~g~~~-----------~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~  161 (662)
T 3azo_A           94 LVFTHFGDQRLYAFEPDAPGGAV-----------PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRR  161 (662)
T ss_dssp             EEEEBTTTCCEEEECTTSTTCCC-----------CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEE
T ss_pred             EEEEECCCCeEEEEcCCCCCCCC-----------CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCcee
Confidence            665553 5566666654  1 11           223333     667789999999 55777777766          5


Q ss_pred             cEEEEECCC------CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC-------
Q 004290          171 TLRQHDFRQ------GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-------  237 (763)
Q Consensus       171 ~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D-------  237 (763)
                      .|++||+.+      ++..                       .+.  ..+...+..++|+|+ +++|+.++.+       
T Consensus       162 ~i~~~~~~~~~~~~~~~~~-----------------------~l~--~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~  215 (662)
T 3azo_A          162 FLAAVPLDGSAAADRSAVR-----------------------ELS--DDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWE  215 (662)
T ss_dssp             EEEEEETTSTTTTCGGGSE-----------------------ESS--CSCSSEECCCEECTT-SSEEEEEEECTTCCTTT
T ss_pred             EEEEEECCCCccccCCcee-----------------------EEE--ecCCCcccCceECCC-CCEEEEEECCCCCCCCC
Confidence            899999877      3210                       111  012245677899998 6888877755       


Q ss_pred             -CcEEEEeCC-CCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC--eEEEEECCC
Q 004290          238 -AFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNH  310 (763)
Q Consensus       238 -g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~--~i~iwd~~~  310 (763)
                       ..|++||+. ++...           ....+.      .++.. .+..++|+|||++++++..++  .|++||+.+
T Consensus       216 ~~~i~~~d~~~~g~~~-----------~~~~l~------~~~~~-~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~  274 (662)
T 3azo_A          216 GTELKTARVTEDGRFA-----------DTRTLL------GGPEE-AIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT  274 (662)
T ss_dssp             CEEEEEEEECTTSCEE-----------EEEEEE------EETTB-CEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred             CcEEEEEEECCCCccc-----------ccEEeC------CCCCc-eEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence             379999998 44100           000000      11122 588999999999777777788  566666544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.66  E-value=5e-15  Score=157.22  Aligned_cols=195  Identities=10%  Similarity=0.022  Sum_probs=119.6

Q ss_pred             EEEEEeCC--CcEEEEeC--CCCeEEE--EEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC-CCCCCCCCCCC
Q 004290           64 LLISGSDD--THINVWSY--SSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS-RFSGRGLDDNA  136 (763)
Q Consensus        64 ~Lasgs~D--~~v~iWd~--~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~  136 (763)
                      +|+.|+..  +.|.+|++  .+++...  .........+..++|+|+  +++|++++.+ .|.+|++. .+.        
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd--g~~l~~~~~~-~v~~~~~~~~g~--------   72 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE--RKNIYGAAMK-KWSSFAVKSPTE--------   72 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT--SSEEEEEEBT-EEEEEEEEETTE--------
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCC--CCEEEEEccc-eEEEEEECCCCC--------
Confidence            35556553  46777664  5665422  221134456889999999  7889988887 99999986 421        


Q ss_pred             CCCceeeec-ccCceeEEEEecCCCC-EEEEEe-------------CCCcEEEEECCC-CCCCCCCCCCCcccceEEEec
Q 004290          137 ITPSALYQC-HTRRVKKLAVEVGNPH-VVWSAS-------------EDGTLRQHDFRQ-GSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       137 ~~~~~~~~~-h~~~v~~l~~sp~~~~-~l~s~s-------------~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~  200 (763)
                        ....... ..+.+.+++|+|++.. +++++.             .++.+.+|++.. ++..           ..+...
T Consensus        73 --~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~-----------~~~~~~  139 (365)
T 1jof_A           73 --IVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE-----------KNVQNY  139 (365)
T ss_dssp             --EEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE-----------EEEEEE
T ss_pred             --EEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc-----------ceEeeE
Confidence              1111110 1133566899995432 344553             689999999974 3210           001000


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-CCCcEEEEeCC-CCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (763)
                      .          ..+...+.+++|+|+ +++|+++. .++.|++||+. +++...           +..     +....+ 
T Consensus       140 ~----------~~~~~~~~~~~~spd-G~~l~~~~~~~~~v~~~~~~~~g~~~~-----------~~~-----~~~~~~-  191 (365)
T 1jof_A          140 E----------YQENTGIHGMVFDPT-ETYLYSADLTANKLWTHRKLASGEVEL-----------VGS-----VDAPDP-  191 (365)
T ss_dssp             E----------CCTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTSCEEE-----------EEE-----EECSST-
T ss_pred             E----------eCCCCcceEEEECCC-CCEEEEEcCCCCEEEEEEECCCCCEEE-----------eee-----EecCCC-
Confidence            0          012346789999998 67777765 46899999998 553210           000     000001 


Q ss_pred             ccceeEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 004290          279 SLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  310 (763)
Q Consensus       279 ~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~  310 (763)
                      ...+..++|+|||++|++++. ++.|.+|++..
T Consensus       192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  224 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence            114889999999999988775 78999998764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.65  E-value=2.9e-15  Score=157.67  Aligned_cols=248  Identities=10%  Similarity=0.069  Sum_probs=162.3

Q ss_pred             Ccccccccccchhhhhccccceeecccc-CceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCC-----CCc
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGH-----SAN   95 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~-~~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h-----~~~   95 (763)
                      ....+..|.+|+  ..+.+.+..+..+. ..+..++|+|+|+++ +++..++.|.+||+.+++.+..+...+     ...
T Consensus        16 ~~~~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~   93 (349)
T 1jmx_B           16 VTNYPNNLHVVD--VASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS   93 (349)
T ss_dssp             EEETTTEEEEEE--TTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEEC
T ss_pred             EeCCCCeEEEEE--CCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccc
Confidence            344567888887  34556666666443 257899999999865 455678999999999999887773333     234


Q ss_pred             eEEEEEeeCCCCcEEEEEeCC------------CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEE
Q 004290           96 VFCTKFVPETSDELVVSGAGD------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (763)
Q Consensus        96 V~~v~~~p~~~~~~l~s~s~d------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  163 (763)
                      +.+++|+|+  +++|++++.+            +.|.+||+.++...       ..+..+. +...+.+++|+|++ +++
T Consensus        94 ~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------~~~~~~~-~~~~~~~~~~s~dg-~l~  162 (349)
T 1jmx_B           94 MYSFAISPD--GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-------KPVRTFP-MPRQVYLMRAADDG-SLY  162 (349)
T ss_dssp             SSCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-------CCSEEEE-CCSSCCCEEECTTS-CEE
T ss_pred             ccceEECCC--CCEEEEEcccccccccccccCCCeEEEEECCCcccc-------ceeeecc-CCCcccceeECCCC-cEE
Confidence            789999999  7888888865            89999999863211       1233333 34468999999955 544


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCC-----------------cc------c---------------------ceEEEe
Q 004290          164 WSASEDGTLRQHDFRQGSSCPPAGSSH-----------------QE------C---------------------RNILLD  199 (763)
Q Consensus       164 ~s~s~dg~i~iwd~~~~~~~~~~~~~~-----------------~~------~---------------------~~~~~~  199 (763)
                       +++  +.|++||+.+++.........                 ..      .                     ....++
T Consensus       163 -~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          163 -VAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             -EES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             -Ecc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence             444  349999998876431111110                 00      0                     000011


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeC-CCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISS-TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (763)
                      ...+....+.. ......+.+++|+| + +++++++  ++.|.+||+.+++.+..+.                   .++ 
T Consensus       240 ~~~~~~~~~~~-~~~~~~~~~~~~sp~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~-------------------~~~-  295 (349)
T 1jmx_B          240 LKTGKTHTQEF-ADLTELYFTGLRSPKD-PNQIYGV--LNRLAKYDLKQRKLIKAAN-------------------LDH-  295 (349)
T ss_dssp             TTTCCEEEEEE-EECSSCEEEEEECSSC-TTEEEEE--ESEEEEEETTTTEEEEEEE-------------------CSS-
T ss_pred             ccCCcEEeccc-ccCCCcceeeEecCCC-CCEEEEE--cCeEEEEECccCeEEEEEc-------------------CCC-
Confidence            11111111100 11223567889999 7 6788877  8899999998865432221                   011 


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                        .+.+++|+|+|++|++++.++.|++||+.+++
T Consensus       296 --~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          296 --TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             --CCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             --CccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence              36789999999999998889999999998854

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.65  E-value=4.9e-14  Score=148.97  Aligned_cols=185  Identities=6%  Similarity=-0.031  Sum_probs=121.7

Q ss_pred             cccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEccC----
Q 004290           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG----   91 (763)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs----------~D~~v~iWd~~~~~~~~~~~~~----   91 (763)
                      .+..+.+++  ..+.+++..+..+..+  .++|+|||++|+++.          .++.|.+||..+++.+..+...    
T Consensus        29 ~d~~v~v~D--~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~  104 (361)
T 2oiz_A           29 TESRVHVYD--YTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV  104 (361)
T ss_dssp             GGCEEEEEE--TTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred             ccCeEEEEE--CCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence            355777776  4556677788777666  899999999999886          3678999999999888877322    


Q ss_pred             -CCCceEEEEEeeCCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCCCcee-eecccCceeEEEEecCCCCEEEEEe
Q 004290           92 -HSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSAS  167 (763)
Q Consensus        92 -h~~~V~~v~~~p~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~s~s  167 (763)
                       +......++|+|+  +++|+++..  ++.|.+||+.+.          +.+.. +. +. ....+.+.|.++..+++.+
T Consensus       105 ~~g~~p~~i~~spd--g~~l~v~n~~~~~~v~v~d~~~~----------~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~  170 (361)
T 2oiz_A          105 QGLNYDGLFRQTTD--GKFIVLQNASPATSIGIVDVAKG----------DYVEDVTA-AA-GCWSVIPQPNRPRSFMTIC  170 (361)
T ss_dssp             CBCCCGGGEEECTT--SSEEEEEEESSSEEEEEEETTTT----------EEEEEEGG-GT-TEEEEEECTTSSSEEEEEE
T ss_pred             ccCCCcceEEECCC--CCEEEEECCCCCCeEEEEECCCC----------cEEEEEec-CC-CcceeEEcCCCCeeEEEEC
Confidence             2345678999999  788888764  689999999863          22333 22 22 2233667786667888999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                      .||.+.+|++......             ......   ..+..  ....+ ..+.+.|+ +..++..+.++.|.++|+..
T Consensus       171 ~dg~~~~v~~~~~g~~-------------~~~~~~---~~~~~--~~~~~-~~~~~~~~-g~~~~~~~~~~~v~v~d~~~  230 (361)
T 2oiz_A          171 GDGGLLTINLGEDGKV-------------ASQSRS---KQMFS--VKDDP-IFIAPALD-KDKAHFVSYYGNVYSADFSG  230 (361)
T ss_dssp             TTSSEEEEEECTTSSE-------------EEEEEC---CCCSC--TTTSC-BCSCCEEC-SSEEEEEBTTSEEEEEECSS
T ss_pred             CCCcEEEEEECCCCcE-------------eeeccc---cceEc--CCCCc-eEEEeccc-CCEEEEEeCCCeEEEEEecC
Confidence            9999999998653211             000000   00000  01111 12223555 45666677889999999875


Q ss_pred             C
Q 004290          248 L  248 (763)
Q Consensus       248 ~  248 (763)
                      .
T Consensus       231 ~  231 (361)
T 2oiz_A          231 D  231 (361)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.64  E-value=1.1e-14  Score=169.78  Aligned_cols=112  Identities=8%  Similarity=0.045  Sum_probs=88.5

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCc-----eEEEEEeeCCCCcEEEEEeCC---------C
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-----VFCTKFVPETSDELVVSGAGD---------A  117 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~-----V~~v~~~p~~~~~~l~s~s~d---------g  117 (763)
                      ...+++|+|||++|+++  |++|++||+.++++...+ .+|...     ...+.|+|+  +++|+.++.+         +
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTT--SSEEEEEEEEEECSSSCEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECCC--CCEEEEEECCeeeEEEccce
Confidence            35689999999999986  899999999999887666 566533     234789999  7999998876         5


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~  181 (763)
                      .+.+||+.++.           ...+..|...+...+|+| +++.|+.+ .++.|++||+.+++
T Consensus        93 ~~~~~d~~~~~-----------~~~l~~~~~~~~~~~~SP-dG~~la~~-~~~~i~~~~~~~~~  143 (740)
T 4a5s_A           93 SYDIYDLNKRQ-----------LITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLP  143 (740)
T ss_dssp             EEEEEETTTTE-----------ECCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSC
T ss_pred             EEEEEECCCCc-----------EEEcccCCCcceeeEECC-CCCEEEEE-ECCeEEEEECCCCc
Confidence            56799999743           334556778899999999 55666666 46899999998775

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.63  E-value=7.4e-14  Score=147.58  Aligned_cols=193  Identities=10%  Similarity=0.073  Sum_probs=123.6

Q ss_pred             CCCEEEEEe------CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe----------CCCcEEEEEC
Q 004290           61 KGSLLISGS------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNL  124 (763)
Q Consensus        61 ~g~~Lasgs------~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s----------~dg~I~iwd~  124 (763)
                      +++++....      .|+.|.+||..+++.+..+ ..+..+  .++|+|+  ++++++++          .++.|.+||.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i-~~g~~p--~i~~spd--g~~lyv~~~~~~~~~~g~~~~~v~v~d~   88 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV-PTAFNG--HVQVSND--GKKIYTMTTYHERITRGKRSDVVEVWDA   88 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE-ECCEEE--EEEECTT--SSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe-cCCCCC--ceEECCC--CCEEEEEEecccccccCCCCCEEEEEEC
Confidence            556665543      3779999999999988888 445444  8999999  78888876          3678999998


Q ss_pred             CCCCCCCCCCCCCCCceeeec------ccCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290          125 SRFSGRGLDDNAITPSALYQC------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~sp~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~  196 (763)
                      .+.          +.+..+..      +......++++| ++++++++..  +++|.+||+.+.+..             
T Consensus        89 ~t~----------~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~-------------  144 (361)
T 2oiz_A           89 DKL----------TFEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYV-------------  144 (361)
T ss_dssp             TTC----------CEEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEE-------------
T ss_pred             cCC----------cEEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEE-------------
Confidence            763          22344332      234577899999 5567766653  689999999887521             


Q ss_pred             EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC-CCCCcccCCCCCCCCcccccccccccCC
Q 004290          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (763)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (763)
                       ..+       +.     ......+.+.|+++..+++.+.||.+.+|+... ++.......       ...+     .  
T Consensus       145 -~~~-------i~-----~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~-------~~~~-----~--  197 (361)
T 2oiz_A          145 -EDV-------TA-----AAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS-------KQMF-----S--  197 (361)
T ss_dssp             -EEE-------GG-----GTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC-------CCCS-----C--
T ss_pred             -EEE-------ec-----CCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc-------cceE-----c--
Confidence             000       00     001123557776557888999999999999865 321100000       0000     0  


Q ss_pred             CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       276 g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ....  ...+.++|++..++..+.++.|+++|+...
T Consensus       198 ~~~~--~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~  231 (361)
T 2oiz_A          198 VKDD--PIFIAPALDKDKAHFVSYYGNVYSADFSGD  231 (361)
T ss_dssp             TTTS--CBCSCCEECSSEEEEEBTTSEEEEEECSSS
T ss_pred             CCCC--ceEEEecccCCEEEEEeCCCeEEEEEecCC
Confidence            0000  112334677878888888999999998763

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.63  E-value=9.9e-14  Score=144.82  Aligned_cols=116  Identities=19%  Similarity=0.140  Sum_probs=86.3

Q ss_pred             cCceEEEEeCCCCCEEEEEeCC------------------------CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC
Q 004290           50 QGCVNAISWNSKGSLLISGSDD------------------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D------------------------~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~  105 (763)
                      -+.|.+|+++|+|+++++.+.+                        ++|.+||..+++.+..+..++-..+..++++|+ 
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~-  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD-  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT-
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC-
Confidence            4679999999999999988877                        479999999999887774456678999999998 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceee---------ecccCceeEEEEecCCCCEEEEEe-CCCcEEEE
Q 004290          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY---------QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQH  175 (763)
Q Consensus       106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iw  175 (763)
                       ++++++...++.|++||.....         ..+..+         .++...+..|+++|+++.++++.+ .++.|++|
T Consensus       102 -g~l~v~d~~~~~v~~~~~~g~~---------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~  171 (329)
T 3fvz_A          102 -GNYWVTDVALHQVFKLDPHSKE---------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF  171 (329)
T ss_dssp             -SCEEEEETTTTEEEEECTTCSS---------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEE
T ss_pred             -CCEEEEECCCCEEEEEeCCCCe---------EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEE
Confidence             7888888889999999986321         012322         233445677777775556666665 46677777


Q ss_pred             E
Q 004290          176 D  176 (763)
Q Consensus       176 d  176 (763)
                      |
T Consensus       172 ~  172 (329)
T 3fvz_A          172 S  172 (329)
T ss_dssp             C
T ss_pred             c
Confidence            6

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.62  E-value=4.8e-14  Score=149.62  Aligned_cols=216  Identities=10%  Similarity=0.106  Sum_probs=135.5

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC-CCeEEEEEccCCCCceEEEEEeeCCCCcE--EEEEe-----------
Q 004290           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDEL--VVSGA-----------  114 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~-~~~~~~~~~~~h~~~V~~v~~~p~~~~~~--l~s~s-----------  114 (763)
                      +...+..++|+|+|++|++++.+ .|.+||+. +++..........+.+.+++|+|+  +++  ++++.           
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN--TRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC--CCEEEEEEecCCcceecccee
Confidence            34568899999999999999888 99999997 777654331111123567899999  673  44553           


Q ss_pred             --CCCcEEEEECCCCCCCCCCCCCCCCceeee----cccCceeEEEEecCCCCEEEEEe-CCCcEEEEECC-CCCCCCCC
Q 004290          115 --GDAEVRLFNLSRFSGRGLDDNAITPSALYQ----CHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFR-QGSSCPPA  186 (763)
Q Consensus       115 --~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~-~~~~~~~~  186 (763)
                        .++.+.+|++... +.        ....+.    .+...+.+++|+| ++++++++. .++.|++||+. +++..   
T Consensus       115 ~~~~g~v~v~~~~~~-g~--------~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~---  181 (365)
T 1jof_A          115 YKFAGYGNVFSVSET-GK--------LEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVE---  181 (365)
T ss_dssp             SSSCCEEEEEEECTT-CC--------EEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEE---
T ss_pred             ecCCceEEEEccCCC-Cc--------CcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEE---
Confidence              6899999999741 11        112222    2456799999999 456666654 46899999997 44311   


Q ss_pred             CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC-CCcEEEEeCC--CCCCCcccCCCCCCCCc
Q 004290          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRR--MLPPLTSCQKRMSPPPC  263 (763)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~-Dg~i~iwd~~--~~~~~~~~~~~~~~~~~  263 (763)
                               .+..        + ..+.+...+..++|+|+ ++++++++. ++.|.+|++.  +++......       .
T Consensus       182 ---------~~~~--------~-~~~~~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-------~  235 (365)
T 1jof_A          182 ---------LVGS--------V-DAPDPGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPVYTHH-------S  235 (365)
T ss_dssp             ---------EEEE--------E-ECSSTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEE-------E
T ss_pred             ---------Eeee--------E-ecCCCCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEccc-------e
Confidence                     0000        0 00112345789999998 677777664 7899999875  332110000       0


Q ss_pred             ccccccccccCCCCCc-----cceeEEE-EcCCCCEEEEEeCC-C-----eEEEEECC
Q 004290          264 VNYFCPMHLSEHGRSS-----LHLTHVT-FSPNGEEVLLSYSG-E-----HVYLMDVN  309 (763)
Q Consensus       264 ~~~~~~~~~~~~g~~~-----~~i~~v~-~spdg~~l~~~s~d-~-----~i~iwd~~  309 (763)
                      +.. .+...  .++..     ..+..++ |+|||++|+++..+ +     .|.+|++.
T Consensus       236 ~~~-~~~~~--~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          236 FPL-IPPGI--PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             EES-SCTTC--CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             EEc-CCCCc--CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence            000 00000  11110     0378999 99999998877653 3     89999986

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.61  E-value=1.9e-15  Score=175.94  Aligned_cols=158  Identities=14%  Similarity=0.124  Sum_probs=102.4

Q ss_pred             EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC---ceeEEEEecCCCCEEEEEeC------
Q 004290           98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASE------  168 (763)
Q Consensus        98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~sp~~~~~l~s~s~------  168 (763)
                      +++|+|+  +.+++ .+.|+.|++||+..+.          +...+..|..   .+.+++|+| ++++|++++.      
T Consensus        20 ~~~~s~d--g~~~~-~~~d~~i~~~~~~~g~----------~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~   85 (719)
T 1z68_A           20 FPNWISG--QEYLH-QSADNNIVLYNIETGQ----------SYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWR   85 (719)
T ss_dssp             CCEESSS--SEEEE-ECTTSCEEEEESSSCC----------EEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSS
T ss_pred             ccEECCC--CeEEE-EcCCCCEEEEEcCCCc----------EEEEEccccccccceeeEEECC-CCCeEEEEecCceeEE
Confidence            7899999  65444 5569999999998743          2333443433   389999999 6677777765      


Q ss_pred             ---CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeC
Q 004290          169 ---DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (763)
Q Consensus       169 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~  245 (763)
                         ++.|++||+.+++....                    ..+      ...+..++|+|+ |+.|+.+. ++.|++||+
T Consensus        86 ~s~~~~i~~~d~~~g~~~~~--------------------~~l------~~~~~~~~~SPD-G~~la~~~-~~~i~~~~~  137 (719)
T 1z68_A           86 YSYTATYYIYDLSNGEFVRG--------------------NEL------PRPIQYLCWSPV-GSKLAYVY-QNNIYLKQR  137 (719)
T ss_dssp             SCEEEEEEEEETTTTEECCS--------------------SCC------CSSBCCEEECSS-TTCEEEEE-TTEEEEESS
T ss_pred             eecceEEEEEECCCCccccc--------------------eec------CcccccceECCC-CCEEEEEE-CCeEEEEeC
Confidence               78999999988763100                    000      134678999998 67888775 789999999


Q ss_pred             CCCCCCcccCCCCCCCCcccccccccccCCCCCc--------cceeEEEEcCCCCEEEEEeCC-CeEEEEEC
Q 004290          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS--------LHLTHVTFSPNGEEVLLSYSG-EHVYLMDV  308 (763)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~i~~v~~spdg~~l~~~s~d-~~i~iwd~  308 (763)
                      .+++........    .....       ..|+..        ....+++|||||++|+.++.| +.+.+|.+
T Consensus       138 ~~g~~~~l~~~~----~~~~v-------~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~  198 (719)
T 1z68_A          138 PGDPPFQITFNG----RENKI-------FNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAY  198 (719)
T ss_dssp             TTSCCEECCCCC----BTTTE-------EESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             CCCCcEEEecCC----CcCCe-------EcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence            887543211000    00000       011111        013589999999999998864 45555544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.58  E-value=9.5e-13  Score=134.29  Aligned_cols=161  Identities=7%  Similarity=0.098  Sum_probs=108.8

Q ss_pred             CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee------cccCceeEEEEecCCCCEEE
Q 004290           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVW  164 (763)
Q Consensus        91 ~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~  164 (763)
                      ++-..+.+++++|+  +.++++...++.|.+||...           ..+..+.      ++...+..+++.+.++.+++
T Consensus        27 g~~~~p~~v~~~~~--g~l~v~~~~~~~i~~~d~~g-----------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v   93 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQ--NDIIVADTNNHRIQIFDKEG-----------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIV   93 (286)
T ss_dssp             TCBSCEEEEEECTT--CCEEEEEGGGTEEEEECTTS-----------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEE
T ss_pred             CccCCCceEEECCC--CCEEEEECCCCEEEEECCCC-----------cEEEEecccCCCcccccCceEEEEEcCCCeEEE
Confidence            45567899999998  78888888899999999763           1122222      34467899999543666666


Q ss_pred             EEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEE
Q 004290          165 SASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (763)
Q Consensus       165 s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iw  243 (763)
                      +... ++.|++|| .+++..              ..+.          ..+...+.+++++|+ ++++++...++.|.+|
T Consensus        94 ~~~~~~~~i~~~d-~~g~~~--------------~~~~----------~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~  147 (286)
T 1q7f_A           94 TERSPTHQIQIYN-QYGQFV--------------RKFG----------ATILQHPRGVTVDNK-GRIIVVECKVMRVIIF  147 (286)
T ss_dssp             EECGGGCEEEEEC-TTSCEE--------------EEEC----------TTTCSCEEEEEECTT-SCEEEEETTTTEEEEE
T ss_pred             EcCCCCCEEEEEC-CCCcEE--------------EEec----------CccCCCceEEEEeCC-CCEEEEECCCCEEEEE
Confidence            6643 78999999 333311              0000          012345789999997 6788877788999999


Q ss_pred             eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      |.. ++.+..+.             .     .++.. .+..++++|+|+.+++.+.++.|++||...
T Consensus       148 ~~~-g~~~~~~~-------------~-----~~~~~-~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g  194 (286)
T 1q7f_A          148 DQN-GNVLHKFG-------------C-----SKHLE-FPNGVVVNDKQEIFISDNRAHCVKVFNYEG  194 (286)
T ss_dssp             CTT-SCEEEEEE-------------C-----TTTCS-SEEEEEECSSSEEEEEEGGGTEEEEEETTC
T ss_pred             cCC-CCEEEEeC-------------C-----CCccC-CcEEEEECCCCCEEEEECCCCEEEEEcCCC
Confidence            964 32221110             0     01111 488999999999777777799999999743

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.54  E-value=1.1e-12  Score=137.09  Aligned_cols=197  Identities=5%  Similarity=0.012  Sum_probs=134.8

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~  130 (763)
                      ..|.+++|++++..+++.+.++.++.|   .++....+ ..+...+.+++|+|+  +++++++..++.|.+||...+.  
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~--g~l~~~~~~~~~i~~~d~~~~~--   77 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEI-SKKGLQLEGLNFDRQ--GQLFLLDVFEGNIFKINPETKE--   77 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEE-ESSCCCEEEEEECTT--SCEEEEETTTCEEEEECTTTCC--
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEE-eccCccccCcEECCC--CCEEEEECCCCEEEEEeCCCCc--
Confidence            457889999998888877888999999   45566666 466677899999998  7888888889999999987532  


Q ss_pred             CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC----CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (763)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (763)
                              .......+...+.+++++| ++.++++...+    +.|.+||..+....            .+..       
T Consensus        78 --------~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~------------~~~~-------  129 (333)
T 2dg1_A           78 --------IKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQ------------DIIE-------  129 (333)
T ss_dssp             --------EEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCE------------EEEC-------
T ss_pred             --------EEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEE------------EEEc-------
Confidence                    1222224567899999999 55777776666    68999998766421            0100       


Q ss_pred             eccCCCCCccceEEEEEeCCCCcEEEEEeC------CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (763)
Q Consensus       207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (763)
                          .......+.+++++|+ ++++++...      .+.|..||..+++..              .+. .      .. .
T Consensus       130 ----~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~--------------~~~-~------~~-~  182 (333)
T 2dg1_A          130 ----DLSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDFRTVT--------------PII-Q------NI-S  182 (333)
T ss_dssp             ----SSSSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTSCCEE--------------EEE-E------EE-S
T ss_pred             ----cCccCCcccceEECCC-CCEEEEeccccccCCCceEEEEeCCCCEEE--------------Eee-c------CC-C
Confidence                0012346889999997 566666543      245666665443211              000 0      00 1


Q ss_pred             ceeEEEEcCCCCEEEEE-eCCCeEEEEECCC
Q 004290          281 HLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH  310 (763)
Q Consensus       281 ~i~~v~~spdg~~l~~~-s~d~~i~iwd~~~  310 (763)
                      .+..++|+|+|++|+.+ +.++.|++|++.+
T Consensus       183 ~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          183 VANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            37889999999876555 4588999999864

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.53  E-value=3.9e-13  Score=156.65  Aligned_cols=262  Identities=10%  Similarity=0.094  Sum_probs=156.6

Q ss_pred             ccccccchhhhhccccceeeccccCc-----eEEEEeCCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEEccCC
Q 004290           27 NHSLQMHSSLVRRLSQERELEGHQGC-----VNAISWNSKGSLLISGSDD---------THINVWSYSSRKLLHSIETGH   92 (763)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~gH~~~-----V~~l~fsp~g~~Lasgs~D---------~~v~iWd~~~~~~~~~~~~~h   92 (763)
                      +..|.+|+  +.+.+....+.+|...     ...++|||||++|+.++.+         +.+.+||+.+++... + ..|
T Consensus        35 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l-~~~  110 (740)
T 4a5s_A           35 ENNILVFN--AEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-E-ERI  110 (740)
T ss_dssp             TTEEEEEE--TTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-S-SCC
T ss_pred             CCcEEEEE--CCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-c-ccC
Confidence            56778887  4455556667777643     3448899999999998876         556799999988543 4 567


Q ss_pred             CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC---------ceeEEEEecCCCCEE
Q 004290           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---------RVKKLAVEVGNPHVV  163 (763)
Q Consensus        93 ~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~sp~~~~~l  163 (763)
                      ...+...+|+|+  |+.||.+. ++.|++|++..+....+.. .......+.++.+         ....+.|+| +++.|
T Consensus       111 ~~~~~~~~~SPd--G~~la~~~-~~~i~~~~~~~~~~~~lt~-~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~l  185 (740)
T 4a5s_A          111 PNNTQWVTWSPV--GHKLAYVW-NNDIYVKIEPNLPSYRITW-TGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFL  185 (740)
T ss_dssp             CTTEEEEEECSS--TTCEEEEE-TTEEEEESSTTSCCEECCS-CCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEE
T ss_pred             CCcceeeEECCC--CCEEEEEE-CCeEEEEECCCCceEEEcC-CCCccceecCcccccccchhcCCCcceEECC-CCCEE
Confidence            788999999999  78888885 6899999998643211100 0001112223322         224589999 55777


Q ss_pred             EEEeCC-CcEEEEECCCCCCC------------CCCCCCCcccceEEEecCC---C---ceeeccCCC---CCccceEEE
Q 004290          164 WSASED-GTLRQHDFRQGSSC------------PPAGSSHQECRNILLDLRC---G---AKRSLADPP---KQTLSLKSC  221 (763)
Q Consensus       164 ~s~s~d-g~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~---~~~~~v~~i  221 (763)
                      +.++.| +.+.+|++......            +............++++..   +   ....+....   ++...+..+
T Consensus       186 a~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  265 (740)
T 4a5s_A          186 AYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDV  265 (740)
T ss_dssp             EEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEE
T ss_pred             EEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEE
Confidence            776654 44888876432211            0011111122345667666   5   232332211   366779999


Q ss_pred             EEeCCCCcEEEEEeC----CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccce-----eEEEEcCCCC
Q 004290          222 DISSTRPHLLLVGGS----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL-----THVTFSPNGE  292 (763)
Q Consensus       222 ~~~p~~~~~l~sgs~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i-----~~v~~spdg~  292 (763)
                      +|+|+ +++++....    +..|++||+.+++....         |....   .+...++.. .|     ..++|+|||+
T Consensus       266 ~wspd-g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~---------~~~~~---~l~~~~~~~-~v~~~~~~~p~fspDG~  331 (740)
T 4a5s_A          266 TWATQ-ERISLQWLRRIQNYSVMDICDYDESSGRWN---------CLVAR---QHIEMSTTG-WVGRFRPSEPHFTLDGN  331 (740)
T ss_dssp             EEEET-TEEEEEEEESSTTEEEEEEEEEETTTTEEE---------ECGGG---CEEEECSSS-CSSSSSCCCCEECTTSS
T ss_pred             EEeCC-CeEEEEEeCCCCCEEEEEEEECCCCccccc---------eeEEE---EeeeccCCc-eEccCcCCCceEcCCCC
Confidence            99998 666655432    34799999998751000         00000   000011111 22     3678999999


Q ss_pred             EEE-EEeC-CC--eEEEEECCCC
Q 004290          293 EVL-LSYS-GE--HVYLMDVNHA  311 (763)
Q Consensus       293 ~l~-~~s~-d~--~i~iwd~~~~  311 (763)
                      .|+ ..+. +|  .|++||+.++
T Consensus       332 ~l~~~~s~~~G~~~l~~~~~~~~  354 (740)
T 4a5s_A          332 SFYKIISNEEGYRHICYFQIDKK  354 (740)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCS
T ss_pred             EEEEEEEcCCCceEEEEEECCCC
Confidence            877 6654 43  6777777653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.52  E-value=6.3e-13  Score=139.75  Aligned_cols=72  Identities=8%  Similarity=0.001  Sum_probs=54.5

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcE-EEEcCCCCCCccccCCCCCC
Q 004290          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTI-KIWTPSASVPSIVSGGAAGP  713 (763)
Q Consensus       635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~I-rvW~~~~~~~~~~~~g~~~~  713 (763)
                      |+ |+ ++++++.|+.++|| +.+|++. .+..+.+.|.+++|+|  .++++++.++.. +||.+. ++ ...+.+|+..
T Consensus       271 ~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~  342 (347)
T 2gop_A          271 KD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP  342 (347)
T ss_dssp             ET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred             Ec-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence            78 88 99999999999999 8878774 4455688899999999  777887777765 777766 43 4445555544


Q ss_pred             C
Q 004290          714 D  714 (763)
Q Consensus       714 ~  714 (763)
                      +
T Consensus       343 ~  343 (347)
T 2gop_A          343 I  343 (347)
T ss_dssp             T
T ss_pred             H
Confidence            3

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.49  E-value=4.5e-13  Score=154.30  Aligned_cols=232  Identities=11%  Similarity=-0.018  Sum_probs=143.5

Q ss_pred             cccccchhhhhccccceeeccccCceE---------EEEeC--CCCCE-EEEEeC-CCcEEEEeCC--C-CeEEEEEccC
Q 004290           28 HSLQMHSSLVRRLSQERELEGHQGCVN---------AISWN--SKGSL-LISGSD-DTHINVWSYS--S-RKLLHSIETG   91 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~---------~l~fs--p~g~~-Lasgs~-D~~v~iWd~~--~-~~~~~~~~~~   91 (763)
                      ....+|..  ......+.|..|...|.         ...|+  |||++ |+.++. +..|.+|++.  + ++ ...+ ..
T Consensus        47 ~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l-~~  122 (662)
T 3azo_A           47 GRATLVRR--RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPL-TP  122 (662)
T ss_dssp             TEEEEEEE--CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEEC-SC
T ss_pred             CcEEEEEE--CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEec-cC
Confidence            34455543  22234566777776666         66665  99998 776654 5667777765  3 43 3444 34


Q ss_pred             -----CCCceEEEEEeeCCCCcEEEEEeCC----------CcEEEEECCCCCCCCCCCCCCCCceeee-cccCceeEEEE
Q 004290           92 -----HSANVFCTKFVPETSDELVVSGAGD----------AEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAV  155 (763)
Q Consensus        92 -----h~~~V~~v~~~p~~~~~~l~s~s~d----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~  155 (763)
                           |...+.+++|+|+  |+.|++++.+          ..|++||+.......     ......+. .+...+..++|
T Consensus       123 ~~~~~~~~~~~~~~~spD--g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~  195 (662)
T 3azo_A          123 VSAVGGGLRWADPVLLPE--RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD-----RSAVRELSDDAHRFVTGPRL  195 (662)
T ss_dssp             CCCSTTCEEEEEEEEETT--TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC-----GGGSEESSCSCSSEECCCEE
T ss_pred             CccCCCCccccCcEECCC--CCEEEEEEecccCCCCCCceeEEEEEECCCCcccc-----CCceeEEEecCCCcccCceE
Confidence                 6778899999999  7899988877          589999998511000     00023344 45677888999


Q ss_pred             ecCCCCEEEEEeCC--------CcEEEEECC-CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004290          156 EVGNPHVVWSASED--------GTLRQHDFR-QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (763)
Q Consensus       156 sp~~~~~l~s~s~d--------g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~  226 (763)
                      +| ++++|+.++.+        ..|++||+. +++..         ....+.             ..+...+..++|+|+
T Consensus       196 Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---------~~~~l~-------------~~~~~~~~~~~~spd  252 (662)
T 3azo_A          196 SP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA---------DTRTLL-------------GGPEEAIAQAEWAPD  252 (662)
T ss_dssp             CT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE---------EEEEEE-------------EETTBCEEEEEECTT
T ss_pred             CC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc---------ccEEeC-------------CCCCceEcceEECCC
Confidence            99 56777766654        379999988 34100         001111             112456789999998


Q ss_pred             CCcEEEEEeCCC--cEEEEeCCCCCCCcccCCCCCCCCcccccccccccC-CCCCccceeEEEEcCCCCEEEEEeCCCeE
Q 004290          227 RPHLLLVGGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE-HGRSSLHLTHVTFSPNGEEVLLSYSGEHV  303 (763)
Q Consensus       227 ~~~~l~sgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~v~~spdg~~l~~~s~d~~i  303 (763)
                       +++++++..++  .|.+||+.+++......              .+... ...-...+..++|+|+++++++++. +.+
T Consensus       253 -g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~--------------~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~  316 (662)
T 3azo_A          253 -GSLIVATDRTGWWNLHRVDPATGAATQLCR--------------REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA  316 (662)
T ss_dssp             -SCEEEEECTTSSCEEEEECTTTCCEEESSC--------------CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC
T ss_pred             -CeEEEEECCCCCeEEEEEECCCCceeeccc--------------ccccccCccccccCceEeEeCCCEEEEEEEc-Ccc
Confidence             56888888888  56666665543211110              00000 0000001567899999999999988 999


Q ss_pred             EEEECC
Q 004290          304 YLMDVN  309 (763)
Q Consensus       304 ~iwd~~  309 (763)
                      +||.++
T Consensus       317 ~l~~~d  322 (662)
T 3azo_A          317 VLGILD  322 (662)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.46  E-value=3.7e-11  Score=133.46  Aligned_cols=226  Identities=12%  Similarity=0.127  Sum_probs=149.1

Q ss_pred             ccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEccCCCCceEEEEEe--
Q 004290           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFV--  102 (763)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~--~~~~~~~~~~~h~~~V~~v~~~--  102 (763)
                      +..+.+.+  ..+.+++.++... ..+..+.|+|||++|++++.|+.|.+||+.  +++.+..+..+  .....++|+  
T Consensus       176 ~~~V~viD--~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G--~~P~~ia~s~~  250 (567)
T 1qks_A          176 AGQIALID--GSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--SEARSIETSKM  250 (567)
T ss_dssp             TTEEEEEE--TTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--SEEEEEEECCS
T ss_pred             CCeEEEEE--CCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC--CCCceeEEccc
Confidence            34555555  4455666666533 356799999999999999999999999996  88888888433  346899999  


Q ss_pred             --eCCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCCCceeeec----------ccC-ceeEEEEecCCCCEEEEEeC
Q 004290          103 --PETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQC----------HTR-RVKKLAVEVGNPHVVWSASE  168 (763)
Q Consensus       103 --p~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----------h~~-~v~~l~~sp~~~~~l~s~s~  168 (763)
                        |+  |+++++++. ++.|.++|..+.          +++..+..          |.. .+..+..+++++.++++...
T Consensus       251 ~~pD--Gk~l~v~n~~~~~v~ViD~~t~----------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          251 EGWE--DKYAIAGAYWPPQYVIMDGETL----------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             TTCT--TTEEEEEEEETTEEEEEETTTC----------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             cCCC--CCEEEEEEccCCeEEEEECCCC----------cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence              68  677666554 699999998763          22333321          222 67788888877778888888


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-CCCcEEEEeCCC
Q 004290          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRM  247 (763)
Q Consensus       169 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~~  247 (763)
                      +|.|.++|....+..            .+....            .......+.|+|+ +++|+++. .++.|.++|+.+
T Consensus       319 ~g~v~~vd~~~~~~~------------~v~~i~------------~~~~~~d~~~~pd-gr~~~va~~~sn~V~ViD~~t  373 (567)
T 1qks_A          319 TGKILLVDYTDLNNL------------KTTEIS------------AERFLHDGGLDGS-HRYFITAANARNKLVVIDTKE  373 (567)
T ss_dssp             TTEEEEEETTCSSEE------------EEEEEE------------CCSSEEEEEECTT-SCEEEEEEGGGTEEEEEETTT
T ss_pred             CCeEEEEecCCCccc------------eeeeee------------ccccccCceECCC-CCEEEEEeCCCCeEEEEECCC
Confidence            899999998765311            011000            1123567889998 56665554 678999999998


Q ss_pred             CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCeEEEEECCCC
Q 004290          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNHA  311 (763)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s--~d~~i~iwd~~~~  311 (763)
                      ++.+..+...             ..  ..|....++ + ++|++..+.+.+  .++.|.++|..+.
T Consensus       374 ~kl~~~i~vg-------------g~--~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~  422 (567)
T 1qks_A          374 GKLVAIEDTG-------------GQ--TPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPE  422 (567)
T ss_dssp             TEEEEEEECS-------------SS--SBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             CcEEEEEecc-------------Cc--CCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence            7644332110             00  112211232 2 688855555443  4689999998773

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.46  E-value=2e-10  Score=117.41  Aligned_cols=200  Identities=10%  Similarity=0.061  Sum_probs=138.6

Q ss_pred             eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004290           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (763)
Q Consensus        46 l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~  125 (763)
                      +..+...+.++++.++|+++++...++.|.+||.. ++........+...+.++++.++  +.++++...++.|..||..
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSD--GEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCC--CCEEEeCCCCCeEEEECCC
Confidence            44566789999999999988877778899999988 55433221335577999999998  7888887778899999976


Q ss_pred             CCCCCCCCCCCCCCceee--ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290          126 RFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                      . .           ...+  ......+..|++.| ++.++++...++.|.+||. +++..             .+.    
T Consensus        87 g-~-----------~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~-------------~~~----  135 (299)
T 2z2n_A           87 G-I-----------IKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIR-------------EYE----  135 (299)
T ss_dssp             S-C-----------EEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEE-------------EEE----
T ss_pred             C-c-----------EEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEE-------------Eec----
Confidence            2 1           1112  22455789999998 5577777777889999997 43310             010    


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  283 (763)
                             .+.....+..++++++ ++++++...++.|..||. +++... +            ..+      ... ..+.
T Consensus       136 -------~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~~-~------------~~~------~~~-~~~~  186 (299)
T 2z2n_A          136 -------LPNKGSYPSFITLGSD-NALWFTENQNNAIGRITE-SGDITE-F------------KIP------TPA-SGPV  186 (299)
T ss_dssp             -------CSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCCEEE-E------------ECS------STT-CCEE
T ss_pred             -------CCCCCCCCceEEEcCC-CCEEEEeCCCCEEEEEcC-CCcEEE-e------------eCC------CCC-Ccce
Confidence                   0112345789999997 577777767789999998 543211 0            000      011 1478


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEC
Q 004290          284 HVTFSPNGEEVLLSYSGEHVYLMDV  308 (763)
Q Consensus       284 ~v~~spdg~~l~~~s~d~~i~iwd~  308 (763)
                      +++++++|...++...++.|.+|+.
T Consensus       187 ~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          187 GITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             EEEECTTSSEEEEETTTTEEEEECT
T ss_pred             eEEECCCCCEEEEccCCceEEEECC
Confidence            9999999997666666889999987

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.45  E-value=1.8e-11  Score=141.94  Aligned_cols=194  Identities=9%  Similarity=0.010  Sum_probs=117.2

Q ss_pred             CCCCEEEEEeCC-C----cEEEEeCCCCeEEEEE-----ccCCCCceEEEEEeeCCCCcEEEEEeCCC-----cEEEEEC
Q 004290           60 SKGSLLISGSDD-T----HINVWSYSSRKLLHSI-----ETGHSANVFCTKFVPETSDELVVSGAGDA-----EVRLFNL  124 (763)
Q Consensus        60 p~g~~Lasgs~D-~----~v~iWd~~~~~~~~~~-----~~~h~~~V~~v~~~p~~~~~~l~s~s~dg-----~I~iwd~  124 (763)
                      |+|++++-...+ +    .+.+.+..+++....+     ..+|...+..++|+|+  |++|+.++.++     .|++||+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPD--g~~la~~~~~~G~~~~~i~v~d~  158 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSED--GEYFAYGLSASGSDWVTIKFMKV  158 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTT--SSEEEEEEEETTCSCEEEEEEET
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCC--CCEEEEEEcCCCCceEEEEEEEC
Confidence            889988755432 2    3344444444432222     1235456889999999  78888766543     8999999


Q ss_pred             CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc----------------EEEEECCCCCCCCCCCC
Q 004290          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT----------------LRQHDFRQGSSCPPAGS  188 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~----------------i~iwd~~~~~~~~~~~~  188 (763)
                      .++.          ...... ....+..++|+| +++.|+.++.++.                |++|++.+++..     
T Consensus       159 ~tg~----------~~~~~~-~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~-----  221 (710)
T 2xdw_A          159 DGAK----------ELPDVL-ERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE-----  221 (710)
T ss_dssp             TTTE----------EEEEEE-EEECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG-----
T ss_pred             CCCC----------CCcccc-cCcccceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCccc-----
Confidence            8743          122111 122367899999 5567777777665                889998765411     


Q ss_pred             CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC-----CCcEEEEeCCC------CC-CCcccCC
Q 004290          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-----DAFARLYDRRM------LP-PLTSCQK  256 (763)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~-----Dg~i~iwd~~~------~~-~~~~~~~  256 (763)
                            .          ..+.....+...+..+.|+|+ +++|+.++.     +..|++||+.+      +. ....   
T Consensus       222 ------~----------~~v~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~---  281 (710)
T 2xdw_A          222 ------D----------ILCAEFPDEPKWMGGAELSDD-GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK---  281 (710)
T ss_dssp             ------C----------EEEECCTTCTTCEEEEEECTT-SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE---
T ss_pred             ------c----------eEEeccCCCCeEEEEEEEcCC-CCEEEEEEEccCCCccEEEEEECcccccccCCccceEE---
Confidence                  0          011122223445778999998 577776664     56899999875      32 1111   


Q ss_pred             CCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC----CeEEEEECCCC
Q 004290          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMDVNHA  311 (763)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d----~~i~iwd~~~~  311 (763)
                                +       ..+.. .+.. .|+|+|+.|+..+..    ..|++||+.++
T Consensus       282 ----------l-------~~~~~-~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~  321 (710)
T 2xdw_A          282 ----------L-------IDNFE-GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDP  321 (710)
T ss_dssp             ----------E-------ECSSS-SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred             ----------e-------eCCCC-cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence                      1       01111 1333 488999988877653    36888887663

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.45  E-value=7.6e-12  Score=133.65  Aligned_cols=247  Identities=9%  Similarity=-0.019  Sum_probs=153.8

Q ss_pred             hhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEE--eeCCCCcEEEEE-
Q 004290           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF--VPETSDELVVSG-  113 (763)
Q Consensus        37 ~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~--~p~~~~~~l~s~-  113 (763)
                      ....+......+|...+..++|+|||+.|+.++.++.|++||+.+++....+ ..+...+....|  +|+  +.+++.. 
T Consensus        67 ~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~d--g~~l~~~~  143 (388)
T 3pe7_A           67 LNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSD--CTKLVGIE  143 (388)
T ss_dssp             TTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTT--SSEEEEEE
T ss_pred             CCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCC--CCeecccc
Confidence            4555555566677766667889999999999999999999999998876655 455555554544  666  6777643 


Q ss_pred             ---------------------eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEec-CCCCEEEEEeCC--
Q 004290          114 ---------------------AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASED--  169 (763)
Q Consensus       114 ---------------------s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-~~~~~l~s~s~d--  169 (763)
                                           ..+..|.+||+.++.           ...+..+...+..++|+| ++ ..|+.+..+  
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-----------~~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~  211 (388)
T 3pe7_A          144 IRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-----------STVILQENQWLGHPIYRPYDD-STVAFCHEGPH  211 (388)
T ss_dssp             EEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEE-EEEEEEECSCT
T ss_pred             ccCcccccccccchhhhhhccCCcceEEEEECCCCc-----------eEEeecCCccccccEECCCCC-CEEEEEEecCC
Confidence                                 244679999998642           444556777899999999 65 555555443  


Q ss_pred             ----CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEE-EeCCC----cE
Q 004290          170 ----GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDA----FA  240 (763)
Q Consensus       170 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~s-gs~Dg----~i  240 (763)
                          ..|.++|+......                       .+.. ......+...+|+|+ ++.|+. +..++    .|
T Consensus       212 ~~~~~~l~~~d~~~~~~~-----------------------~l~~-~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~l  266 (388)
T 3pe7_A          212 DLVDARMWLINEDGTNMR-----------------------KVKT-HAEGESCTHEFWVPD-GSALVYVSYLKGSPDRFI  266 (388)
T ss_dssp             TTSSCSEEEEETTSCCCE-----------------------ESCC-CCTTEEEEEEEECTT-SSCEEEEEEETTCCCEEE
T ss_pred             CCCcceEEEEeCCCCceE-----------------------Eeee-CCCCcccccceECCC-CCEEEEEecCCCCCcceE
Confidence                36777777654311                       1111 011135678899998 555544 33322    39


Q ss_pred             EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEE---------eCCCeEEEEECCCC
Q 004290          241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS---------YSGEHVYLMDVNHA  311 (763)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~---------s~d~~i~iwd~~~~  311 (763)
                      ++||+.+++...           +..+ +..    .+.......++|+|||+.|+..         ..+..|++||+.++
T Consensus       267 ~~~d~~~g~~~~-----------l~~~-~~~----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~  330 (388)
T 3pe7_A          267 YSADPETLENRQ-----------LTSM-PAC----SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG  330 (388)
T ss_dssp             EEECTTTCCEEE-----------EEEE-CCE----EEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred             EEEecCCCceEE-----------EEcC-CCc----eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence            999999875211           0000 000    0000001223799999988864         44679999999985


Q ss_pred             CccceEeecCC-----------CCeeeeeccCCCCcccCC
Q 004290          312 GGRAMRYTVGD-----------ASKIMSFTPTLNGLELQP  340 (763)
Q Consensus       312 ~~~~~~~~~~~-----------~~~~~~~~p~~~~~~~~~  340 (763)
                      .. .....+..           .....+|+|+.+.+.+..
T Consensus       331 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s  369 (388)
T 3pe7_A          331 TQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS  369 (388)
T ss_dssp             EE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             ce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence            43 33333333           356678999887665543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.43  E-value=2.9e-11  Score=123.88  Aligned_cols=165  Identities=10%  Similarity=0.019  Sum_probs=109.5

Q ss_pred             EEEEEccCCCCceEEEEEeeCCCCc-EEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE
Q 004290           84 LLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (763)
Q Consensus        84 ~~~~~~~~h~~~V~~v~~~p~~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  162 (763)
                      .+..+ ..+.....+++|+|+  ++ +++++..++.|..||...+            ...+..+...+.+|+++| ++.+
T Consensus        19 ~~~~l-~~~~~~~eg~~~d~~--g~~l~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~~~l~~~~-dg~l   82 (296)
T 3e5z_A           19 EARRL-ADGFTWTEGPVYVPA--RSAVIFSDVRQNRTWAWSDDGQ------------LSPEMHPSHHQNGHCLNK-QGHL   82 (296)
T ss_dssp             CCEEE-ECCCSSEEEEEEEGG--GTEEEEEEGGGTEEEEEETTSC------------EEEEESSCSSEEEEEECT-TCCE
T ss_pred             cEEEE-ecCCccccCCeEeCC--CCEEEEEeCCCCEEEEEECCCC------------eEEEECCCCCcceeeECC-CCcE
Confidence            33444 345567889999999  56 7888888999999999852            344556777899999999 5677


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEE----e---
Q 004290          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG----G---  235 (763)
Q Consensus       163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sg----s---  235 (763)
                      +++...++.|.+||..+++..            .+.....+         .....++.++++|+ ++++++.    +   
T Consensus        83 ~v~~~~~~~i~~~d~~~g~~~------------~~~~~~~~---------~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~  140 (296)
T 3e5z_A           83 IACSHGLRRLERQREPGGEWE------------SIADSFEG---------KKLNSPNDVCLAPD-GSLWFSDPTYGIDKP  140 (296)
T ss_dssp             EEEETTTTEEEEECSTTCCEE------------EEECEETT---------EECCCCCCEEECTT-SCEEEEECSHHHHCG
T ss_pred             EEEecCCCeEEEEcCCCCcEE------------EEeeccCC---------CCCCCCCCEEECCC-CCEEEECCccccccc
Confidence            777767789999998766521            11100000         01224668999997 6777763    2   


Q ss_pred             ----------CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEE
Q 004290          236 ----------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL  305 (763)
Q Consensus       236 ----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~i  305 (763)
                                ..+.|..++.. ++ +..+                    ..+.. ..+.++|+|+|+.|++.+.++.|++
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~-g~-~~~~--------------------~~~~~-~~~gi~~s~dg~~lv~~~~~~~i~~  197 (296)
T 3e5z_A          141 EEGYGGEMELPGRWVFRLAPD-GT-LSAP--------------------IRDRV-KPNGLAFLPSGNLLVSDTGDNATHR  197 (296)
T ss_dssp             GGSSCCCCCSSSCEEEEECTT-SC-EEEE--------------------ECCCS-SEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             cccccccccCCCcEEEEECCC-CC-EEEe--------------------ecCCC-CCccEEECCCCCEEEEeCCCCeEEE
Confidence                      12345555543 22 1100                    00111 3788999999999877777899999


Q ss_pred             EECC
Q 004290          306 MDVN  309 (763)
Q Consensus       306 wd~~  309 (763)
                      |++.
T Consensus       198 ~~~~  201 (296)
T 3e5z_A          198 YCLN  201 (296)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9987

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.42  E-value=1.1e-11  Score=143.73  Aligned_cols=209  Identities=11%  Similarity=0.027  Sum_probs=130.2

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc----
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE----  118 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D~-----~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~----  118 (763)
                      +|...+..++|||||++||.++.++     +|++||+.+++.+.... .+ ..+..++|+|+  ++.|+.++.++.    
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~-~~~~~~~wspD--g~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ER-VKFSCMAWTHD--GKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EE-ECSCCEEECTT--SSEEEEEECCCCSSCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cC-cccceEEEEeC--CCEEEEEEECCccccc
Confidence            3555788999999999999775543     89999999998776431 22 23678999999  788988888766    


Q ss_pred             ------------EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC-----CCcEEEEECCC--
Q 004290          119 ------------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-----DGTLRQHDFRQ--  179 (763)
Q Consensus       119 ------------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~-----dg~i~iwd~~~--  179 (763)
                                  |++|++.++....      ..+.....|...+..+.|+|+ +++|+.++.     +..|++||+.+  
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~------~~v~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~~l~~~d~~~~~  270 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSED------ILCAEFPDEPKWMGGAELSDD-GRYVLLSIREGCDPVNRLWYCDLQQES  270 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGC------EEEECCTTCTTCEEEEEECTT-SCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred             cccccccCCCCEEEEEECCCCcccc------eEEeccCCCCeEEEEEEEcCC-CCEEEEEEEccCCCccEEEEEECcccc
Confidence                        9999998643211      012222235566789999995 456555543     56899999876  


Q ss_pred             ----CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC----CcEEEEeCCCCCCC
Q 004290          180 ----GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPPL  251 (763)
Q Consensus       180 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D----g~i~iwd~~~~~~~  251 (763)
                          +...          ...+.              .+...+.. .|+|+ +..|+..+.+    ..|.+||+.++...
T Consensus       271 ~~~~~~~~----------~~~l~--------------~~~~~~~~-~~s~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~  324 (710)
T 2xdw_A          271 NGITGILK----------WVKLI--------------DNFEGEYD-YVTNE-GTVFTFKTNRHSPNYRLINIDFTDPEES  324 (710)
T ss_dssp             SSSCSSCC----------CEEEE--------------CSSSSCEE-EEEEE-TTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred             cccCCccc----------eEEee--------------CCCCcEEE-EEecc-CCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence                3210          01111              01112222 47786 4555555443    36999998765310


Q ss_pred             cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeE--EEEECCC
Q 004290          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV--YLMDVNH  310 (763)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i--~iwd~~~  310 (763)
                                 ....+.+     . .....+..++|++++.++++...|+..  ++|++.+
T Consensus       325 -----------~~~~l~~-----~-~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~  368 (710)
T 2xdw_A          325 -----------KWKVLVP-----E-HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT  368 (710)
T ss_dssp             -----------GCEEEEC-----C-CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT
T ss_pred             -----------cceeccC-----C-CCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC
Confidence                       0011100     1 111248889999887778888888854  5555544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.42  E-value=3.1e-11  Score=122.96  Aligned_cols=221  Identities=10%  Similarity=0.134  Sum_probs=150.5

Q ss_pred             ccccccchhhhhccccceeec------cccCceEEEEe-CCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEccCCCCceEE
Q 004290           27 NHSLQMHSSLVRRLSQERELE------GHQGCVNAISW-NSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFC   98 (763)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~------gH~~~V~~l~f-sp~g~~Lasgs~-D~~v~iWd~~~~~~~~~~~~~h~~~V~~   98 (763)
                      +..|.+++..   .+.+..+.      +|...+.++++ .+++.++++... ++.|++|| .+++.+..+...+...+.+
T Consensus        50 ~~~i~~~d~~---g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~  125 (286)
T 1q7f_A           50 NHRIQIFDKE---GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRG  125 (286)
T ss_dssp             GTEEEEECTT---SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEE
T ss_pred             CCEEEEECCC---CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceE
Confidence            4556666532   23334442      35567899999 578887777643 78999999 5677777774445567899


Q ss_pred             EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee--cccCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004290           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (763)
Q Consensus        99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd  176 (763)
                      +++.|+  ++++++...++.|.+||...           ..+..+.  .+...+..|+++| +++++++...++.|++||
T Consensus       126 i~~~~~--g~l~v~~~~~~~i~~~~~~g-----------~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~  191 (286)
T 1q7f_A          126 VTVDNK--GRIIVVECKVMRVIIFDQNG-----------NVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFN  191 (286)
T ss_dssp             EEECTT--SCEEEEETTTTEEEEECTTS-----------CEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEE
T ss_pred             EEEeCC--CCEEEEECCCCEEEEEcCCC-----------CEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEc
Confidence            999998  78888888889999999653           1233332  3456789999999 557777777889999999


Q ss_pred             CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC-cEEEEeCCCCCCCcccC
Q 004290          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQ  255 (763)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg-~i~iwd~~~~~~~~~~~  255 (763)
                      .....               +..+         ...++...+..++++|+ ++++++...++ .|++||.. ++.+..+.
T Consensus       192 ~~g~~---------------~~~~---------~~~g~~~~p~~i~~d~~-G~l~v~~~~~~~~i~~~~~~-g~~~~~~~  245 (286)
T 1q7f_A          192 YEGQY---------------LRQI---------GGEGITNYPIGVGINSN-GEILIADNHNNFNLTIFTQD-GQLISALE  245 (286)
T ss_dssp             TTCCE---------------EEEE---------SCTTTSCSEEEEEECTT-CCEEEEECSSSCEEEEECTT-SCEEEEEE
T ss_pred             CCCCE---------------EEEE---------ccCCccCCCcEEEECCC-CCEEEEeCCCCEEEEEECCC-CCEEEEEc
Confidence            74321               1110         01122346789999997 67888887776 99999964 33222111


Q ss_pred             CCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                                   .     .... ..+.+++++|+|+++++ +.|+.|++|++...
T Consensus       246 -------------~-----~~~~-~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          246 -------------S-----KVKH-AQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             -------------E-----SSCC-SCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             -------------c-----cCCC-CcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence                         0     0011 13778999999986665 67999999998663

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.41  E-value=2.8e-12  Score=148.31  Aligned_cols=204  Identities=9%  Similarity=-0.002  Sum_probs=127.2

Q ss_pred             cccCceEEEEeCCCCCEEE-----EEeCCCcEEEEeCCCCeEEEEEccCCCCce--EEEEEeeCCCCcEEEEEeCCCc--
Q 004290           48 GHQGCVNAISWNSKGSLLI-----SGSDDTHINVWSYSSRKLLHSIETGHSANV--FCTKFVPETSDELVVSGAGDAE--  118 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~La-----sgs~D~~v~iWd~~~~~~~~~~~~~h~~~V--~~v~~~p~~~~~~l~s~s~dg~--  118 (763)
                      +|...+.+++|||||++||     +|+.+.+|++||+.+++.+.   ..+...+  ..++|+|+  ++.|+.++.|..  
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---~~~~~~~~~~~~~wspD--g~~l~~~~~d~~~~  192 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---VDVIEGGKYATPKWTPD--SKGFYYEWLPTDPS  192 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---SCCBSCCTTCCCEECTT--SSEEEEEECCCCTT
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---CcccCcccccceEEecC--CCEEEEEEecCCCC
Confidence            5666799999999999999     44556789999999987641   1122222  68999999  799999988876  


Q ss_pred             -----------EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC----cEEEEECCCCCCC
Q 004290          119 -----------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSSC  183 (763)
Q Consensus       119 -----------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg----~i~iwd~~~~~~~  183 (763)
                                 |++|++.++....      ..+.....|...+..+.|+|++ ++|+.++.++    .|++||..+++. 
T Consensus       193 ~~~~~~~~~~~v~~~~l~t~~~~~------~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~-  264 (695)
T 2bkl_A          193 IKVDERPGYTTIRYHTLGTEPSKD------TVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDF-  264 (695)
T ss_dssp             SCGGGGGGGCEEEEEETTSCGGGC------EEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSC-
T ss_pred             CccccCCCCCEEEEEECCCCchhc------eEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCce-
Confidence                       9999998743211      1233333455678899999955 5555555444    566665433321 


Q ss_pred             CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe---CCCcEEEEeCCCCCCCcccCCCCCC
Q 004290          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---SDAFARLYDRRMLPPLTSCQKRMSP  260 (763)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs---~Dg~i~iwd~~~~~~~~~~~~~~~~  260 (763)
                                 ..+..              +...+....+ +++ .+++.+.   .++.|.+||+.++...         
T Consensus       265 -----------~~l~~--------------~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~---------  308 (695)
T 2bkl_A          265 -----------RLLVK--------------GVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARA---------  308 (695)
T ss_dssp             -----------EEEEE--------------CSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGG---------
T ss_pred             -----------EEeec--------------CCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCcc---------
Confidence                       11111              1122344445 443 4444444   2578999998765310         


Q ss_pred             CCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004290          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (763)
Q Consensus       261 ~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~  309 (763)
                        ....+.      ..+....+..++|+ ++..+++...|+..+||.+.
T Consensus       309 --~~~~l~------~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          309 --SWKEIV------PEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             --GCEEEE------CCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             --CCeEEe------cCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence              001110      01112247888888 66777888889988888654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.40  E-value=1.8e-11  Score=127.49  Aligned_cols=225  Identities=9%  Similarity=0.017  Sum_probs=152.9

Q ss_pred             ccccchhhhhccccceeec-cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEc--------cCCCCceEE
Q 004290           29 SLQMHSSLVRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIE--------TGHSANVFC   98 (763)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~-gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~~~~--------~~h~~~V~~   98 (763)
                      .|.+++.  .+.+++..+. ++-.....|+|+|+|+++++...++.|++||..... .+..+.        .++...+..
T Consensus        70 ~i~~~d~--~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~  147 (329)
T 3fvz_A           70 TILVIDP--NNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD  147 (329)
T ss_dssp             CEEEECT--TTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred             cEEEEEC--CCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence            4555542  2333444443 455678999999999999999999999999986542 445552        234457899


Q ss_pred             EEEeeCCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCCCceeee----------cccCceeEEEEecCCCCEEEEEe
Q 004290           99 TKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQ----------CHTRRVKKLAVEVGNPHVVWSAS  167 (763)
Q Consensus        99 v~~~p~~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~----------~h~~~v~~l~~sp~~~~~l~s~s  167 (763)
                      ++|+|+. +.++++.+ .++.|++||...           ..+..+.          ++...+..|+++|+++.++++..
T Consensus       148 ia~~~~~-g~lyv~d~~~~~~I~~~~~~g-----------~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~  215 (329)
T 3fvz_A          148 VAVEPST-GAVFVSDGYCNSRIVQFSPSG-----------KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR  215 (329)
T ss_dssp             EEECTTT-CCEEEEECSSCCEEEEECTTS-----------CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET
T ss_pred             EEEeCCC-CeEEEEeCCCCCeEEEEcCCC-----------CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC
Confidence            9999932 78888886 699999999542           2233332          23345899999996578888888


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEE-------eCCCcE
Q 004290          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-------GSDAFA  240 (763)
Q Consensus       168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sg-------s~Dg~i  240 (763)
                      .++.|++||..+++..              .         ......+...+.+++|+|  +..+++.       ..+..|
T Consensus       216 ~~~~I~~~~~~~G~~~--------------~---------~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v  270 (329)
T 3fvz_A          216 ENGRIQCFKTDTKEFV--------------R---------EIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQG  270 (329)
T ss_dssp             TTTEEEEEETTTCCEE--------------E---------EECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCE
T ss_pred             CCCEEEEEECCCCcEE--------------E---------EEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEE
Confidence            8999999998866421              0         011112334677888988  2333333       334589


Q ss_pred             EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      ++||..+++.+..+...                 .++.. ....|+++|+|..+++...++.|++|++..
T Consensus       271 ~~~~~~~g~~~~~~~~~-----------------~~~~~-~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          271 FVMNFSSGEIIDVFKPV-----------------RKHFD-MPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEETTTCCEEEEECCS-----------------SSCCS-SEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EEEEcCCCeEEEEEcCC-----------------CCccC-CeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            99999888655433110                 11222 488999999997777777899999999875

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.39  E-value=1.3e-11  Score=142.70  Aligned_cols=194  Identities=7%  Similarity=-0.025  Sum_probs=114.7

Q ss_pred             CCCCCEEEEEeCCC---cEEEE--eCCCCeEEEEE-----ccCCCCceEEEEEeeCCCCcEEE-----EEeCCCcEEEEE
Q 004290           59 NSKGSLLISGSDDT---HINVW--SYSSRKLLHSI-----ETGHSANVFCTKFVPETSDELVV-----SGAGDAEVRLFN  123 (763)
Q Consensus        59 sp~g~~Lasgs~D~---~v~iW--d~~~~~~~~~~-----~~~h~~~V~~v~~~p~~~~~~l~-----s~s~dg~I~iwd  123 (763)
                      +|+|++++....++   .-.||  +...+.....+     ..+|...+.+++|+|+  |++|+     .|+.+..|++||
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPD--G~~la~~~~~~G~~~~~i~v~d  153 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWD--GKKVAFAQKPNAADEAVLHVID  153 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTT--SSEEEEEEEETTCSCCEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCC--CCEEEEEECCCCCceEEEEEEE
Confidence            37899888766543   34445  44444433222     1246667999999999  78888     344457899999


Q ss_pred             CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc-------------EEEEECCCCCCCCCCCCCC
Q 004290          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-------------LRQHDFRQGSSCPPAGSSH  190 (763)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~-------------i~iwd~~~~~~~~~~~~~~  190 (763)
                      +.++....        ...+...  ....++|+| +++.|+.++.|..             |++|++.+++..       
T Consensus       154 l~tg~~~~--------~~~~~~~--~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~-------  215 (695)
T 2bkl_A          154 VDSGEWSK--------VDVIEGG--KYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK-------  215 (695)
T ss_dssp             TTTCCBCS--------SCCBSCC--TTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG-------
T ss_pred             CCCCCCcC--------CcccCcc--cccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh-------
Confidence            99743210        0011111  126789999 5577777777766             999998876411       


Q ss_pred             cccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC----cEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004290          191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----FARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (763)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (763)
                                    ...+...+.+...+.++.|+|+ +++|+.++.++    .|++||..++...              .
T Consensus       216 --------------~~lv~~~~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~l~~~~~~~~~~~--------------~  266 (695)
T 2bkl_A          216 --------------DTVVHERTGDPTTFLQSDLSRD-GKYLFVYILRGWSENDVYWKRPGEKDFR--------------L  266 (695)
T ss_dssp             --------------CEEEECCCCCTTCEEEEEECTT-SCCEEEEEEETTTEEEEEEECTTCSSCE--------------E
T ss_pred             --------------ceEEEecCCCCEEEEEEEECCC-CCEEEEEEeCCCCceEEEEEcCCCCceE--------------E
Confidence                          0112222334456789999998 57777666555    5666655433211              1


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeC----CCeEEEEECCCC
Q 004290          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHA  311 (763)
Q Consensus       267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~----d~~i~iwd~~~~  311 (763)
                      +.       .+.. .+....+ ++|. |+..+.    ++.|++||+.++
T Consensus       267 l~-------~~~~-~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~  305 (695)
T 2bkl_A          267 LV-------KGVG-AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP  305 (695)
T ss_dssp             EE-------ECSS-CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred             ee-------cCCC-ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence            10       0111 2445556 5666 554443    578888887663

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.38  E-value=9.7e-11  Score=122.16  Aligned_cols=240  Identities=10%  Similarity=0.055  Sum_probs=155.0

Q ss_pred             cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---
Q 004290           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---  116 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---  116 (763)
                      .+....+.++...+.+++|+|+|++++++..++.|.+||..+++..... ..+...+.+++|+|+  ++++++...+   
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~d--g~l~v~~~~~~~~  110 (333)
T 2dg1_A           34 AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKD--GRLFVCYLGDFKS  110 (333)
T ss_dssp             CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTT--SCEEEEECTTSSS
T ss_pred             cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCC--CcEEEEeCCCCCC
Confidence            3455667778788899999999998889989999999999988765544 356678999999999  6888877766   


Q ss_pred             -CcEEEEECCCCCCCCCCCCCCCCceee--ecccCceeEEEEecCCCCEEEEEeC------CCcEEEEECCCCCCCCCCC
Q 004290          117 -AEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQGSSCPPAG  187 (763)
Q Consensus       117 -g~I~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~  187 (763)
                       +.|.+||......          ...+  ..+...+.+++++| ++.++++...      .+.|..+|..+++.     
T Consensus       111 ~~~i~~~d~~~~~~----------~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~-----  174 (333)
T 2dg1_A          111 TGGIFAATENGDNL----------QDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-----  174 (333)
T ss_dssp             CCEEEEECTTSCSC----------EEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCE-----
T ss_pred             CceEEEEeCCCCEE----------EEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEE-----
Confidence             6899999875321          1111  12445789999999 5567666543      24555565543321     


Q ss_pred             CCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEE-EEEeCCCcEEEEeCCC-CCCCcccCCCCCCCCccc
Q 004290          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVN  265 (763)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l-~sgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~  265 (763)
                             ..+.              .....+..++|+|+ ++.| ++.+.++.|.+||+.+ +..+..+..        .
T Consensus       175 -------~~~~--------------~~~~~~~~i~~~~d-g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~--------~  224 (333)
T 2dg1_A          175 -------TPII--------------QNISVANGIALSTD-EKVLWVTETTANRLHRIALEDDGVTIQPFGA--------T  224 (333)
T ss_dssp             -------EEEE--------------EEESSEEEEEECTT-SSEEEEEEGGGTEEEEEEECTTSSSEEEEEE--------E
T ss_pred             -------EEee--------------cCCCcccceEECCC-CCEEEEEeCCCCeEEEEEecCCCcCcccccc--------e
Confidence                   0010              01124678999997 5544 5556688999999864 222111000        0


Q ss_pred             ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCC------CCeeeeeccCCCC
Q 004290          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD------ASKIMSFTPTLNG  335 (763)
Q Consensus       266 ~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~p~~~~  335 (763)
                      .+  ...  .++  ..+..++++++|+++++...++.|.+||... +..........      .+..++|+|+...
T Consensus       225 ~~--~~~--~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g-~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~  293 (333)
T 2dg1_A          225 IP--YYF--TGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG-YPIGQILIPGRDEGHMLRSTHPQFIPGTNQ  293 (333)
T ss_dssp             EE--EEC--CSS--SEEEEEEEBTTCCEEEEEETTTEEEEECTTS-CEEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred             EE--Eec--CCC--CCCCceEECCCCCEEEEEcCCCEEEEECCCC-CEEEEEEcCCCccccccCcceEEECCCCCE
Confidence            00  000  112  1478899999999877777889999999843 32222222211      4567778776433

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.36  E-value=4.4e-11  Score=124.51  Aligned_cols=183  Identities=5%  Similarity=-0.070  Sum_probs=116.3

Q ss_pred             CCCcEEEEeCCCCeEEEEEcc-----CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee
Q 004290           70 DDTHINVWSYSSRKLLHSIET-----GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ  144 (763)
Q Consensus        70 ~D~~v~iWd~~~~~~~~~~~~-----~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  144 (763)
                      .++.|.+||.++++....+..     ........+.+..   +.++++...++.|.+||..+.+          .+..+.
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~---~~lyv~~~~~~~v~viD~~t~~----------~~~~i~   81 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD---GIGWIVVNNSHVIFAIDINTFK----------EVGRIT   81 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET---TEEEEEEGGGTEEEEEETTTCC----------EEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC---CEEEEEEcCCCEEEEEECcccE----------EEEEcC
Confidence            478999999999987655421     1224467787753   4677777778999999998732          245553


Q ss_pred             cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEe
Q 004290          145 CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS  224 (763)
Q Consensus       145 ~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  224 (763)
                       .......|+++++ +.++++...++.|.+||+.+.+..            ..+...        ...+.......+++ 
T Consensus        82 -~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~------------~~i~~g--------~~~~~~~~p~~i~~-  138 (328)
T 3dsm_A           82 -GFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEIT------------GYIECP--------DMDMESGSTEQMVQ-  138 (328)
T ss_dssp             -CCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEEE------------EEEECT--------TCCTTTCBCCCEEE-
T ss_pred             -CCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeEE------------EEEEcC--------CccccCCCcceEEE-
Confidence             3467889999884 466655558899999999876521            001100        00011113345666 


Q ss_pred             CCCCcEEEEEe-CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---
Q 004290          225 STRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---  300 (763)
Q Consensus       225 p~~~~~l~sgs-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d---  300 (763)
                      . ++.++++.. .++.|.+||+.+++.+..+..                   +.   ....++++|+|++++++..+   
T Consensus       139 ~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-------------------g~---~p~~i~~~~dG~l~v~~~~~~~~  195 (328)
T 3dsm_A          139 Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTI-------------------GI---QPTSLVMDKYNKMWTITDGGYEG  195 (328)
T ss_dssp             E-TTEEEEEECTTCCEEEEEETTTTEEEEEEEC-------------------SS---CBCCCEECTTSEEEEEBCCBCTT
T ss_pred             E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-------------------CC---CccceEEcCCCCEEEEECCCccC
Confidence            2 344444443 489999999998754432210                   00   24568899999876666554   


Q ss_pred             -------CeEEEEECCCC
Q 004290          301 -------EHVYLMDVNHA  311 (763)
Q Consensus       301 -------~~i~iwd~~~~  311 (763)
                             +.|.+||..++
T Consensus       196 ~~~~~~~~~v~~id~~t~  213 (328)
T 3dsm_A          196 SPYGYEAPSLYRIDAETF  213 (328)
T ss_dssp             CSSCBCCCEEEEEETTTT
T ss_pred             CccccCCceEEEEECCCC
Confidence                   67888887663

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.35  E-value=3.3e-10  Score=125.85  Aligned_cols=204  Identities=11%  Similarity=0.061  Sum_probs=136.5

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCC
Q 004290           60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP  139 (763)
Q Consensus        60 p~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~  139 (763)
                      |.+.++++...+++|.++|..+++.+..+..  ...+..+.|+|+  ++++++++.|+.|.+||+.....        +.
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~t~--------~~  232 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEP--------TT  232 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSC--------CE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECCC--CCEEEEEcCCCeEEEEECCCCCC--------cE
Confidence            4456777888899999999999999988843  345779999999  79999999999999999952111        22


Q ss_pred             ceeeecccCceeEEEEe----cCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCC-
Q 004290          140 SALYQCHTRRVKKLAVE----VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-  214 (763)
Q Consensus       140 ~~~~~~h~~~v~~l~~s----p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  214 (763)
                      +..+.. ......++|+    |++..++++...+++|.++|..+.+...            .+...  .. .......| 
T Consensus       233 v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~------------~i~~~--~~-~~~~~~~~p  296 (567)
T 1qks_A          233 VAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK------------IQSTR--GM-TYDEQEYHP  296 (567)
T ss_dssp             EEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE------------EEECC--EE-CTTTCCEES
T ss_pred             eEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE------------EEecc--cc-ccccccccC
Confidence            444543 3346789999    6554445455567999999988765321            01100  00 00000001 


Q ss_pred             ccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEE
Q 004290          215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV  294 (763)
Q Consensus       215 ~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l  294 (763)
                      ...+..+.++++++.+++....+|.|.++|....+.+.           +..     +. .   ......+.|+|+|+++
T Consensus       297 ~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~-----------v~~-----i~-~---~~~~~d~~~~pdgr~~  356 (567)
T 1qks_A          297 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK-----------TTE-----IS-A---ERFLHDGGLDGSHRYF  356 (567)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-----------EEE-----EE-C---CSSEEEEEECTTSCEE
T ss_pred             CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce-----------eee-----ee-c---cccccCceECCCCCEE
Confidence            12467788888766677777778999999987643111           000     00 0   1136678999999998


Q ss_pred             EEEeC-CCeEEEEECCCC
Q 004290          295 LLSYS-GEHVYLMDVNHA  311 (763)
Q Consensus       295 ~~~s~-d~~i~iwd~~~~  311 (763)
                      +++.. ++.|.++|+.++
T Consensus       357 ~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          357 ITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             EEEEGGGTEEEEEETTTT
T ss_pred             EEEeCCCCeEEEEECCCC
Confidence            87775 889999999885

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.32  E-value=1.6e-11  Score=131.33  Aligned_cols=223  Identities=7%  Similarity=-0.063  Sum_probs=138.4

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEE-------------------EEEeeCCCCcEEEEE
Q 004290           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC-------------------TKFVPETSDELVVSG  113 (763)
Q Consensus        53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~-------------------v~~~p~~~~~~l~s~  113 (763)
                      ...+.|+|||++|+.++.++.|++||+.+++..... ..+......                   +.|+|+  ++.++.+
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd--g~~~~~~  159 (396)
T 3c5m_A           83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL--TSWEKFA  159 (396)
T ss_dssp             TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC--CSHHHHH
T ss_pred             cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCC--Ccceeee
Confidence            334889999999999999999999999988765544 333332222                   245565  4444433


Q ss_pred             -----eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC------CcEEEEECCCCCC
Q 004290          114 -----AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGSS  182 (763)
Q Consensus       114 -----s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d------g~i~iwd~~~~~~  182 (763)
                           ..+..|.+||+..+.           ...+..+...+..+.|+|+++..|+.++.+      ..|.+||+..++.
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~-----------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~  228 (396)
T 3c5m_A          160 EFYHTNPTCRLIKVDIETGE-----------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV  228 (396)
T ss_dssp             HHHHTCCCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred             eeccCCCcceEEEEECCCCc-----------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence                 356789999988632           233345677889999999444545444433      3588888765431


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC-----CcEEEEeCCCCCCCcccCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRMLPPLTSCQKR  257 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D-----g~i~iwd~~~~~~~~~~~~~  257 (763)
                      .                       .+.. ......+..++|+|+ +++|+.++.+     +.|++||+.+++...     
T Consensus       229 ~-----------------------~l~~-~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-----  278 (396)
T 3c5m_A          229 R-----------------------KIKE-HAEGESCTHEFWIPD-GSAMAYVSYFKGQTDRVIYKANPETLENEE-----  278 (396)
T ss_dssp             E-----------------------ESSC-CCTTEEEEEEEECTT-SSCEEEEEEETTTCCEEEEEECTTTCCEEE-----
T ss_pred             e-----------------------Eeec-cCCCccccceEECCC-CCEEEEEecCCCCccceEEEEECCCCCeEE-----
Confidence            1                       1111 011235778999998 5666655443     459999998764211     


Q ss_pred             CCCCCcccccccccccCCCCCccceeEEEEcC-CCCEEEEEe----------------CCCeEEEEECCCCCccceEeec
Q 004290          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSY----------------SGEHVYLMDVNHAGGRAMRYTV  320 (763)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s----------------~d~~i~iwd~~~~~~~~~~~~~  320 (763)
                            +..          ..  ... +.|+| ||++|+.++                .+..|++||+.++... .....
T Consensus       279 ------l~~----------~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~  338 (396)
T 3c5m_A          279 ------VMV----------MP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH  338 (396)
T ss_dssp             ------EEE----------CC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC
T ss_pred             ------eee----------CC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC
Confidence                  000          00  133 88999 999888765                3478999999886532 22222


Q ss_pred             CC-----------CCeeeeeccCCCCcccC
Q 004290          321 GD-----------ASKIMSFTPTLNGLELQ  339 (763)
Q Consensus       321 ~~-----------~~~~~~~~p~~~~~~~~  339 (763)
                      ..           .....+|+|+.+.+.+.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  368 (396)
T 3c5m_A          339 STSWDVLDGDRQITHPHPSFTPNDDGVLFT  368 (396)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred             CCccccccccccCCCCCceEccCCCeEEEE
Confidence            22           14456788877665543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.31  E-value=3.2e-10  Score=114.17  Aligned_cols=155  Identities=8%  Similarity=-0.027  Sum_probs=100.8

Q ss_pred             ceEEEEEeeCCCCcEEE-EEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEE
Q 004290           95 NVFCTKFVPETSDELVV-SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR  173 (763)
Q Consensus        95 ~V~~v~~~p~~~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~  173 (763)
                      ...+++++++  +++++ +...++.|.+||......          ......+...+.+|++.+ ++.++++.. ++.|.
T Consensus        25 ~p~~i~~~~~--g~l~v~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~   90 (270)
T 1rwi_B           25 SPSGVAVDSA--GNVYVTSEGMYGRVVKLATGSTGT----------TVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVV   90 (270)
T ss_dssp             CEEEEEECTT--CCEEEEECSSSCEEEEECC---------------EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEE
T ss_pred             CccceEECCC--CCEEEEccCCCCcEEEecCCCccc----------ceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEE
Confidence            7789999998  67777 546789999999764211          111122335688899999 456666655 88999


Q ss_pred             EEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcc
Q 004290          174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (763)
Q Consensus       174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~  253 (763)
                      +||.......             .+            .......+.+++++|+ ++++++...++.|.+|+..+......
T Consensus        91 ~~d~~~~~~~-------------~~------------~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~~  144 (270)
T 1rwi_B           91 TLAAGSNNQT-------------VL------------PFDGLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQTVL  144 (270)
T ss_dssp             EECTTCSCCE-------------EC------------CCCSCSSEEEEEECTT-CCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred             EEeCCCceEe-------------ee------------ecCCcCCCcceEECCC-CCEEEEECCCCEEEEEECCCceeEee
Confidence            9997654311             00            0011245789999996 67777777788999997654321100


Q ss_pred             cCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      .                    ..... .+.+++++|+|+.+++...++.|.+|+...
T Consensus       145 ~--------------------~~~~~-~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  180 (270)
T 1rwi_B          145 P--------------------FTGLN-DPDGVAVDNSGNVYVTDTDNNRVVKLEAES  180 (270)
T ss_dssp             C--------------------CCSCC-SCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             c--------------------cccCC-CceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence            0                    00111 377899999999776666788999998765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.31  E-value=2.1e-10  Score=117.40  Aligned_cols=234  Identities=10%  Similarity=0.043  Sum_probs=150.2

Q ss_pred             cccceeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004290           40 LSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~  118 (763)
                      ...+..+..+.....+++|+|+|+ +++++..++.|.+||..++  ...+ ..+...+.+++|+|+  ++++++...++.
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~d--g~l~v~~~~~~~   91 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQ--GHLIACSHGLRR   91 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTT--CCEEEEETTTTE
T ss_pred             CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCC--CcEEEEecCCCe
Confidence            344556666777889999999998 8888889999999999887  4555 456778999999998  788887777789


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEeC-----------------CCcEEEEECCCC
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASE-----------------DGTLRQHDFRQG  180 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s~-----------------dg~i~iwd~~~~  180 (763)
                      |.+||..++....       ...... .....+..++++| ++.++++.+.                 .+.|..+|.. +
T Consensus        92 i~~~d~~~g~~~~-------~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g  162 (296)
T 3e5z_A           92 LERQREPGGEWES-------IADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G  162 (296)
T ss_dssp             EEEECSTTCCEEE-------EECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S
T ss_pred             EEEEcCCCCcEEE-------EeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-C
Confidence            9999986532110       000111 1123567899999 5577776321                 2345555443 2


Q ss_pred             CCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC-CCCCCcccCCCCC
Q 004290          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMS  259 (763)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~-~~~~~~~~~~~~~  259 (763)
                      +.            ..+              ..+......++|+|+ ++++++.+.++.|++||+. .+.....      
T Consensus       163 ~~------------~~~--------------~~~~~~~~gi~~s~d-g~~lv~~~~~~~i~~~~~~~~g~~~~~------  209 (296)
T 3e5z_A          163 TL------------SAP--------------IRDRVKPNGLAFLPS-GNLLVSDTGDNATHRYCLNARGETEYQ------  209 (296)
T ss_dssp             CE------------EEE--------------ECCCSSEEEEEECTT-SCEEEEETTTTEEEEEEECSSSCEEEE------
T ss_pred             CE------------EEe--------------ecCCCCCccEEECCC-CCEEEEeCCCCeEEEEEECCCCcCcCC------
Confidence            10            000              012345688999998 5677777888999999987 3321000      


Q ss_pred             CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeee-ccCCCCc
Q 004290          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF-TPTLNGL  336 (763)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~  336 (763)
                          ...+ .      .+.. .+.+++++++|+++++.  ++.|.+|+.. ++.......+.. +..++| .|+.+.+
T Consensus       210 ----~~~~-~------~~~~-~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L  271 (296)
T 3e5z_A          210 ----GVHF-T------VEPG-KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTL  271 (296)
T ss_dssp             ----EEEE-C------CSSS-CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEE
T ss_pred             ----CeEe-e------CCCC-CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEE
Confidence                0011 0      0111 36679999999865555  8899999987 343333333333 677778 4554433

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.30  E-value=4e-09  Score=111.31  Aligned_cols=194  Identities=13%  Similarity=0.024  Sum_probs=119.8

Q ss_pred             EeCCCCCEEEEEeC--CC---cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe----------CCCcEEE
Q 004290           57 SWNSKGSLLISGSD--DT---HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRL  121 (763)
Q Consensus        57 ~fsp~g~~Lasgs~--D~---~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s----------~dg~I~i  121 (763)
                      ...|+++++.....  ..   +|.++|..+++.+..+..+ ..+  .+.|+|+  ++.++.+.          .++.|.+
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~spD--g~~lyv~n~~~~~~~rg~~~~~v~v  101 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAHS--GSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECCC--CCEEEEEeccccccccCCCCCeEEE
Confidence            34577877766553  22   8899999999998888433 333  9999999  78887775          3678999


Q ss_pred             EECCCCCCCCCCCCCCCCceeeecc-------cCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcc
Q 004290          122 FNLSRFSGRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQE  192 (763)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~  192 (763)
                      ||..+.+          .+..+.--       ......++|+| ++++|+.++.  ++.|.++| .+++....       
T Consensus       102 iD~~t~~----------~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~-------  162 (373)
T 2mad_H          102 FDPVTFL----------PIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQ-------  162 (373)
T ss_pred             EECCCCc----------EEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeE-------
Confidence            9998632          12222111       13356899999 5566666653  57899999 87752200       


Q ss_pred             cceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccc
Q 004290          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (763)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (763)
                          +          + ..+      .++.+.|.+...+++.+.||.+.++|. +++........       ..+     
T Consensus       163 ----~----------i-~~~------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~-------~~~-----  208 (373)
T 2mad_H          163 ----L----------L-SSP------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVG-------AML-----  208 (373)
T ss_pred             ----E----------c-CCC------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecc-------ccc-----
Confidence                0          0 000      124556665667888889999999999 76543111000       000     


Q ss_pred             cCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       273 ~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                        .+... -.....+.+++..++..+..+.+.+.|+...
T Consensus       209 --~~~~p-~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~  244 (373)
T 2mad_H          209 --TAAQN-LLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             --cCCcc-eeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence              00000 1233556777665555557788999988763

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.29  E-value=1.4e-09  Score=109.73  Aligned_cols=99  Identities=7%  Similarity=0.028  Sum_probs=74.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCC-CceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCC
Q 004290           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP  139 (763)
Q Consensus        61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~  139 (763)
                      .+++|++++.|+.|.+||.++|+.+.++ ..+. ..+.++.++|+  |++|+  +.++.|..||. ++          +.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~-~~~~~~~~~~~~~~pd--G~ilv--s~~~~V~~~d~-~G----------~~   67 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEY-PLEKGWECNSVAATKA--GEILF--SYSKGAKMITR-DG----------RE   67 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEE-ECCTTCCCCEEEECTT--SCEEE--ECBSEEEEECT-TS----------CE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEe-CCCccCCCcCeEECCC--CCEEE--eCCCCEEEECC-CC----------CE
Confidence            4678999999999999999999999998 4444 57899999999  78888  45788999998 42          33


Q ss_pred             ceeeecc-cCceeEEEEecCCCCEEEEEeC-CCcEEEEE
Q 004290          140 SALYQCH-TRRVKKLAVEVGNPHVVWSASE-DGTLRQHD  176 (763)
Q Consensus       140 ~~~~~~h-~~~v~~l~~sp~~~~~l~s~s~-dg~i~iwd  176 (763)
                      +..+..+ ...+.++.+.| +++++++.+. ++.|..+|
T Consensus        68 ~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd  105 (276)
T 3no2_A           68 LWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVN  105 (276)
T ss_dssp             EEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEEC
T ss_pred             EEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEe
Confidence            5566543 24677888888 5577777665 55554444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.27  E-value=6.8e-09  Score=105.99  Aligned_cols=200  Identities=9%  Similarity=0.041  Sum_probs=135.5

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~  127 (763)
                      .....+.++++.++|+++++...++.|.+||.. ++........+...+.++++.++  +.++++...++.|..||.. +
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL--GDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT-S
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCC--CCEEEEecCCCeEEEECCC-C
Confidence            345678999999999988888788999999988 55443222334467899999988  6777777768889999977 2


Q ss_pred             CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (763)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (763)
                      ...         ..........+.++++.+ ++.++++...++.|..||.. ++..             .+.        
T Consensus        93 ~~~---------~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~-------------~~~--------  140 (300)
T 2qc5_A           93 GFT---------EYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIY-------------EYD--------  140 (300)
T ss_dssp             CEE---------EEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEE-------------EEE--------
T ss_pred             CeE---------EecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEE-------------Ecc--------
Confidence            210         111222346789999998 55777777667889999876 3310             010        


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (763)
Q Consensus       208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~  287 (763)
                         .+.....+.+++++++ ++++++...++.|..||. +++... +.            .+      +.. ..+..+++
T Consensus       141 ---~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~-~~------------~~------~~~-~~~~~i~~  195 (300)
T 2qc5_A          141 ---LPNKGSYPAFITLGSD-NALWFTENQNNSIGRITN-TGKLEE-YP------------LP------TNA-AAPVGITS  195 (300)
T ss_dssp             ---CSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEE-EE------------CS------STT-CCEEEEEE
T ss_pred             ---CCCCCCCceeEEECCC-CCEEEEecCCCeEEEECC-CCcEEE-ee------------CC------CCC-CCcceEEE
Confidence               0112345789999997 566666666788999998 443111 10            00      011 14889999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEC
Q 004290          288 SPNGEEVLLSYSGEHVYLMDV  308 (763)
Q Consensus       288 spdg~~l~~~s~d~~i~iwd~  308 (763)
                      +++|...++....+.|.+|+.
T Consensus       196 d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          196 GNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             CTTSSEEEEETTTTEEEEECT
T ss_pred             CCCCCEEEEccCCCEEEEEcC
Confidence            999986666666778998887

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.24  E-value=2.9e-10  Score=132.36  Aligned_cols=193  Identities=9%  Similarity=0.038  Sum_probs=112.0

Q ss_pred             CCCCCEEEEEeCCCc---EEEEeC--C---CCeEEEE-----EccCCCCceEEEEEeeCCCCcEEEEEeCC-----CcEE
Q 004290           59 NSKGSLLISGSDDTH---INVWSY--S---SRKLLHS-----IETGHSANVFCTKFVPETSDELVVSGAGD-----AEVR  120 (763)
Q Consensus        59 sp~g~~Lasgs~D~~---v~iWd~--~---~~~~~~~-----~~~~h~~~V~~v~~~p~~~~~~l~s~s~d-----g~I~  120 (763)
                      +|+|++++....++.   -.||-.  .   .+.....     +..+|...+..++|+|+  |++|+.++.+     ..|+
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPD--G~~la~~~~~~G~e~~~i~  192 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDD--GRLLAYSVQDGGSDWRTVK  192 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTT--SSEEEEEEEETTCSEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCC--CCEEEEEEcCCCCceEEEE
Confidence            389998886654432   555644  3   3332222     11234457889999999  7888876653     4599


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc--------------EEEEECCCCCCCCCC
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--------------LRQHDFRQGSSCPPA  186 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~--------------i~iwd~~~~~~~~~~  186 (763)
                      +||+.++..          +. ...+...+..++|+|+  +.|+.++.++.              |++|++.++...   
T Consensus       193 v~dl~tg~~----------~~-~~~~~~~~~~~~wspD--~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~---  256 (741)
T 1yr2_A          193 FVGVADGKP----------LA-DELKWVKFSGLAWLGN--DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA---  256 (741)
T ss_dssp             EEETTTCCE----------EE-EEEEEEESCCCEESTT--SEEEEEECCCC--------CCCCCEEEEEETTSCGGG---
T ss_pred             EEECCCCCC----------CC-ccCCCceeccEEEECC--CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh---
Confidence            999987431          11 1112222367899995  56666665544              788887655310   


Q ss_pred             CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC-----cEEEEeCCCC--CCCcccCCCCC
Q 004290          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-----FARLYDRRML--PPLTSCQKRMS  259 (763)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg-----~i~iwd~~~~--~~~~~~~~~~~  259 (763)
                             ..           .+...+.+...+..+.|+|+ +++|+..+.++     .|++||+.++  +....+     
T Consensus       257 -------~~-----------lv~~~~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-----  312 (741)
T 1yr2_A          257 -------DQ-----------PVFATPELPKRGHGASVSSD-GRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL-----  312 (741)
T ss_dssp             -------CE-----------EEECCTTCTTCEEEEEECTT-SCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE-----
T ss_pred             -------CE-----------EEeccCCCCeEEEEEEECCC-CCEEEEEEEccCCCcceEEEEECCCCCCcccEEe-----
Confidence                   01           11222223345788999998 67777766543     7999998765  201111     


Q ss_pred             CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC----CeEEEEECCC
Q 004290          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMDVNH  310 (763)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d----~~i~iwd~~~  310 (763)
                                     ..+.. .+... ++|+|+.|+..+.+    +.|++||+.+
T Consensus       313 ---------------~~~~~-~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          313 ---------------IPDLK-AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             ---------------ECSSS-SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             ---------------cCCCC-ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence                           00111 13333 34889988887763    4588887765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.23  E-value=4.7e-09  Score=108.14  Aligned_cols=66  Identities=6%  Similarity=0.040  Sum_probs=58.9

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCC-eEEEEeCCCcEEEEcCCC
Q 004290          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSGIDNTIKIWTPSA  700 (763)
Q Consensus       635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~-~laS~s~D~~IrvW~~~~  700 (763)
                      ++++|++.++...++.|.+||.++++.+..+..+...+.+++|+|++. ++++...++.|..|++..
T Consensus       233 ~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            789999999988899999999999999888888888999999999998 667777788999999865

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.21  E-value=4.5e-10  Score=117.73  Aligned_cols=205  Identities=7%  Similarity=-0.006  Sum_probs=128.1

Q ss_pred             CceEEEEeCCCCCEEEEEeCC---C--cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---------
Q 004290           51 GCVNAISWNSKGSLLISGSDD---T--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---------  116 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D---~--~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---------  116 (763)
                      ..+..++|+|||++||.++.+   +  .|.+||+.+++..... ..+ . +..++|+|+  ++.|+.++.+         
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~~~-~-~~~~~wspd--g~~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL-EAK-N-IRSLEWNED--SRKLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-EES-E-EEEEEECTT--SSEEEEEEECCCC------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE-cCC-C-ccceeECCC--CCEEEEEEccCCCcCCcEE
Confidence            468899999999999987654   2  3888899888765544 233 3 999999999  6878777632         


Q ss_pred             ------------------CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-------c
Q 004290          117 ------------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-------T  171 (763)
Q Consensus       117 ------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-------~  171 (763)
                                        ..|.+||+..+.          .+..+.. . .+..++|+| ++ +++++..++       .
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~----------~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~  199 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEE----------VIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKF  199 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTTE----------EEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCC
T ss_pred             EcccceeecCcccccCccceEEEEECCCCe----------EEeeecC-C-CcccccCCC-Ce-EEEEEeccccccccccc
Confidence                              568899987632          1133433 3 788999999 44 777776542       3


Q ss_pred             EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC--------CcEEEE
Q 004290          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD--------AFARLY  243 (763)
Q Consensus       172 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D--------g~i~iw  243 (763)
                      ..+|.+.+++                       ...+..   + ..+..+  +|+ +++|+.++.+        ..|.+|
T Consensus       200 ~~l~~~d~~~-----------------------~~~l~~---~-~~~~~~--spd-g~~l~~~~~~~~~~~~~~~~l~~~  249 (347)
T 2gop_A          200 WDIYIWEDGK-----------------------EEKMFE---K-VSFYAV--DSD-GERILLYGKPEKKYMSEHNKLYIY  249 (347)
T ss_dssp             EEEEEEETTE-----------------------EEEEEE---E-ESEEEE--EEC-SSCEEEEECCSSSCCCSSCEEEEE
T ss_pred             ccEEEeCCCc-----------------------eEEecc---C-cceeeE--CCC-CCEEEEEEccccCCccccceEEEE
Confidence            4444443221                       011110   1 223333  887 5677666644        367788


Q ss_pred             eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE-EEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCC
Q 004290          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH-VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD  322 (763)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~-v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~  322 (763)
                      |  +++.. .+             .      .++.. .+.. +.|+ ++ .+++++.++.++|| +.++. .........
T Consensus       250 d--~~~~~-~l-------------~------~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~-~~~~~~~~~  302 (347)
T 2gop_A          250 D--GKEVM-GI-------------L------DEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE-IKPIAKGRH  302 (347)
T ss_dssp             C--SSCEE-ES-------------S------TTCCS-EEEEEEEET-TE-EEEEEEETTEEEEE-EESSS-EEEEECSSS
T ss_pred             C--CCceE-ec-------------c------ccCCc-ccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc-eEEEecCCC
Confidence            7  33211 00             0      11222 4776 8999 88 88888999999999 88533 333333344


Q ss_pred             CCeeeeecc
Q 004290          323 ASKIMSFTP  331 (763)
Q Consensus       323 ~~~~~~~~p  331 (763)
                      .+..++|+|
T Consensus       303 ~v~~~~~s~  311 (347)
T 2gop_A          303 WIMGFDVDE  311 (347)
T ss_dssp             EEEEEEESS
T ss_pred             eEEeeeeeC
Confidence            455666776

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.19  E-value=1.9e-09  Score=108.49  Aligned_cols=219  Identities=6%  Similarity=-0.017  Sum_probs=141.0

Q ss_pred             ceEEEEeCCCCCEEE-EEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290           52 CVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (763)
Q Consensus        52 ~V~~l~fsp~g~~La-sgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~  130 (763)
                      ...+++++++|++++ +...++.|.+||..++... .+...+...+.++++.++  ++++++.. ++.|.+||.....  
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~--g~l~v~~~-~~~i~~~d~~~~~--   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGA--GTVYVTDF-NNRVVTLAAGSNN--   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTT--CCEEEEET-TTEEEEECTTCSC--
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCC--CCEEEEcC-CCEEEEEeCCCce--
Confidence            678999999999877 5477899999998665433 221234456889999998  67666665 8899999987421  


Q ss_pred             CCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeecc
Q 004290          131 GLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (763)
Q Consensus       131 ~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (763)
                               ...+. .....+..|++.| ++.++++...++.|.+|+..+....             .            
T Consensus        99 ---------~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~-------------~------------  143 (270)
T 1rwi_B           99 ---------QTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQT-------------V------------  143 (270)
T ss_dssp             ---------CEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCE-------------E------------
T ss_pred             ---------EeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeE-------------e------------
Confidence                     22221 2235688999999 5577777777889999975543211             0            


Q ss_pred             CCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC
Q 004290          210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  289 (763)
Q Consensus       210 ~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp  289 (763)
                      ........+.+++++|+ ++++++...++.|.+||..........                    .... ..+.++++++
T Consensus       144 ~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~~~--------------------~~~~-~~p~~i~~d~  201 (270)
T 1rwi_B          144 LPFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVVLP--------------------FTDI-TAPWGIAVDE  201 (270)
T ss_dssp             CCCCSCCSCCCEEECTT-CCEEEEEGGGTEEEEECTTTCCEEECC--------------------CSSC-CSEEEEEECT
T ss_pred             eccccCCCceeEEEeCC-CCEEEEECCCCEEEEEecCCCceEeec--------------------ccCC-CCceEEEECC
Confidence            00111234678999996 577777777889999998764321100                    0011 1488999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004290          290 NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (763)
Q Consensus       290 dg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (763)
                      +|..+++...++.|.+|+................+..++++|+.
T Consensus       202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g  245 (270)
T 1rwi_B          202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR  245 (270)
T ss_dssp             TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC
T ss_pred             CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCC
Confidence            99766666678999999987643222111111344566676654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.17  E-value=1.7e-09  Score=109.00  Aligned_cols=225  Identities=11%  Similarity=0.118  Sum_probs=156.9

Q ss_pred             cccccccccchhhhhccccceeecccc-CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~-~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~  102 (763)
                      .+.+..+.+++  .++.+.+..+..+. ..++++.++|+|++|+  +.++.|..||. +++.+..+..+....+.++.+.
T Consensus        11 ~~~~~~v~~~d--~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~   85 (276)
T 3no2_A           11 GSGWNKIAIIN--KDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARIL   85 (276)
T ss_dssp             CTTCSEEEEEE--TTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEEC
T ss_pred             eCCCCEEEEEE--CCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEEC
Confidence            34567788887  55677788888776 5789999999999998  45778999999 8999988843334578899999


Q ss_pred             eCCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCCCceeee------cccCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004290          103 PETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (763)
Q Consensus       103 p~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iw  175 (763)
                      |+  ++++++.+. ++.|..+|..   +.        .+..+.      .+......+++.+ +++++++...++.|..|
T Consensus        86 ~d--G~~lv~~~~~~~~v~~vd~~---Gk--------~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~  151 (276)
T 3no2_A           86 PD--GNALVAWCGHPSTILEVNMK---GE--------VLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREI  151 (276)
T ss_dssp             TT--SCEEEEEESTTEEEEEECTT---SC--------EEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEE
T ss_pred             CC--CCEEEEecCCCCEEEEEeCC---CC--------EEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEE
Confidence            99  789998887 7777777753   21        122222      2223455667788 67899999999999999


Q ss_pred             ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccC
Q 004290          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (763)
Q Consensus       176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~  255 (763)
                      |.. ++              .+|.....            ..+.++.+.++ ++++++++.++.|..+|..+++.+.++.
T Consensus       152 d~~-G~--------------~~w~~~~~------------~~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          152 APN-GQ--------------LLNSVKLS------------GTPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             CTT-SC--------------EEEEEECS------------SCCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             CCC-CC--------------EEEEEECC------------CCccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            987 65              23433221            13445677786 6888888888899999999888665543


Q ss_pred             CCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC--------CeEEEEECCC
Q 004290          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--------EHVYLMDVNH  310 (763)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d--------~~i~iwd~~~  310 (763)
                      ...             +  .+..-..++.++..++|..+++.+..        +..+++++..
T Consensus       204 ~~~-------------~--~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~  251 (276)
T 3no2_A          204 AND-------------I--EGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS  251 (276)
T ss_dssp             GGG-------------S--BSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT
T ss_pred             CCC-------------C--CCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECC
Confidence            110             0  00111148889999999988887522        2445666644

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.17  E-value=1.4e-10  Score=121.36  Aligned_cols=178  Identities=15%  Similarity=0.096  Sum_probs=128.2

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-----------EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-----------~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      +++.|++++...+|++|+.+ .+++|++....           ....+  .+.. |+.++|  +  +..|+++ .++.|+
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~--~lp~-V~~l~f--d--~~~L~v~-~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK--EIPD-VIFVCF--H--GDQVLVS-TRNALY  109 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTT-EEEEEE--E--TTEEEEE-ESSEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe--eCCC-eeEEEE--C--CCEEEEE-cCCcEE
Confidence            69999999999999999998 56679865322           11222  3555 999999  5  6899988 789999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  200 (763)
                      +||+....          .......|...+.++.+.+.  + ++++..||.|.+||+..+...                 
T Consensus       110 v~dv~sl~----------~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~-----------------  159 (388)
T 1xip_A          110 SLDLEELS----------EFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTK-----------------  159 (388)
T ss_dssp             EEESSSTT----------CEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEE-----------------
T ss_pred             EEEchhhh----------ccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCccc-----------------
Confidence            99998632          13345567778888887652  2 778899999999999876521                 


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC--CcccCCCCCCCCcccccccccccC-CCC
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSE-HGR  277 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~g~  277 (763)
                                  .....|.|++|+|. |  ++.|..||.+++|+......  ..++.            +|..+.. .+|
T Consensus       160 ------------~~~~~Vs~v~WSpk-G--~~vg~~dg~i~~~~~~~~~~~~k~~I~------------~Pp~~~~~~~~  212 (388)
T 1xip_A          160 ------------QLAQNVTSFDVTNS-Q--LAVLLKDRSFQSFAWRNGEMEKQFEFS------------LPSELEELPVE  212 (388)
T ss_dssp             ------------EEEESEEEEEECSS-E--EEEEETTSCEEEEEEETTEEEEEEEEC------------CCHHHHTSCTT
T ss_pred             ------------cccCCceEEEEcCC-c--eEEEEcCCcEEEEcCCCccccccceec------------CCcccccccCC
Confidence                        02347999999997 4  78899999999998876542  11111            1111111 123


Q ss_pred             CccceeEEEEcCCCCEEEE
Q 004290          278 SSLHLTHVTFSPNGEEVLL  296 (763)
Q Consensus       278 ~~~~i~~v~~spdg~~l~~  296 (763)
                      . ..|.+|+|.+++.+|++
T Consensus       213 ~-~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          213 E-YSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             T-SEEEEEEESSSSEEEEE
T ss_pred             C-eeEEEEEEecCCeEEEE
Confidence            3 36999999999998875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.17  E-value=5.1e-09  Score=108.76  Aligned_cols=238  Identities=10%  Similarity=-0.020  Sum_probs=153.1

Q ss_pred             cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCC----CceEEEEEee
Q 004290           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS----ANVFCTKFVP  103 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~----~~V~~v~~~p  103 (763)
                      ..+.+++  .++.+.+.++.. ......++++++++++++...++.|.+||..+++....+..+..    .....+++ .
T Consensus        64 ~~v~viD--~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~  139 (328)
T 3dsm_A           64 HVIFAID--INTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y  139 (328)
T ss_dssp             TEEEEEE--TTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E
T ss_pred             CEEEEEE--CcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E
Confidence            4555555  455666677753 46688999999996666655889999999999998877743321    14567777 3


Q ss_pred             CCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC----------CcE
Q 004290          104 ETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----------GTL  172 (763)
Q Consensus       104 ~~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d----------g~i  172 (763)
                      .  +.++++.. .++.|.++|+.+..          .+..+.. ......++++| ++++++++..+          +.|
T Consensus       140 ~--~~lyv~~~~~~~~v~viD~~t~~----------~~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v  205 (328)
T 3dsm_A          140 G--KYVYVNCWSYQNRILKIDTETDK----------VVDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSL  205 (328)
T ss_dssp             T--TEEEEEECTTCCEEEEEETTTTE----------EEEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEE
T ss_pred             C--CEEEEEcCCCCCEEEEEECCCCe----------EEEEEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCceE
Confidence            3  45555544 48999999998632          2333332 33467889999 55666666544          789


Q ss_pred             EEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCc
Q 004290          173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT  252 (763)
Q Consensus       173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~  252 (763)
                      .++|..+.+..            ..+.+.           . ......++|+|+ ++.|+++..  .|.+||..+++...
T Consensus       206 ~~id~~t~~v~------------~~~~~~-----------~-g~~p~~la~~~d-~~~lyv~~~--~v~~~d~~t~~~~~  258 (328)
T 3dsm_A          206 YRIDAETFTVE------------KQFKFK-----------L-GDWPSEVQLNGT-RDTLYWINN--DIWRMPVEADRVPV  258 (328)
T ss_dssp             EEEETTTTEEE------------EEEECC-----------T-TCCCEEEEECTT-SCEEEEESS--SEEEEETTCSSCCS
T ss_pred             EEEECCCCeEE------------EEEecC-----------C-CCCceeEEEecC-CCEEEEEcc--EEEEEECCCCceee
Confidence            99998876421            011110           0 125689999997 567776654  89999998775421


Q ss_pred             ccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEE-----eCCCeEEEEECCCCCccceEeecCCCCeee
Q 004290          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-----YSGEHVYLMDVNHAGGRAMRYTVGDASKIM  327 (763)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~-----s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  327 (763)
                      ..            +.+     .+  ......++++|++..|+++     ..++.|.+||.. ++ ....+..+..+..+
T Consensus       259 ~~------------~~~-----~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~-~~~~i~~G~~P~~~  317 (328)
T 3dsm_A          259 RP------------FLE-----FR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK-LIDEFYVGIIPGAF  317 (328)
T ss_dssp             SC------------SBC-----CC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC-EEEEEEEEESEEEE
T ss_pred             ee------------eec-----CC--CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC-EEEEEEeccCcceE
Confidence            10            000     00  1247889999954445444     468999999998 44 34444556666667


Q ss_pred             eecc
Q 004290          328 SFTP  331 (763)
Q Consensus       328 ~~~p  331 (763)
                      +|..
T Consensus       318 ~~~~  321 (328)
T 3dsm_A          318 CWKL  321 (328)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            7654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.15  E-value=3.6e-09  Score=110.69  Aligned_cols=193  Identities=17%  Similarity=0.132  Sum_probs=119.5

Q ss_pred             ccccceeeccccCceEEEEeCCCCCEEEEEe--CCCcEEEEeCCCCeEEEEEc------cCCCCceEEEEEeeCCCCcEE
Q 004290           39 RLSQERELEGHQGCVNAISWNSKGSLLISGS--DDTHINVWSYSSRKLLHSIE------TGHSANVFCTKFVPETSDELV  110 (763)
Q Consensus        39 ~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs--~D~~v~iWd~~~~~~~~~~~------~~h~~~V~~v~~~p~~~~~~l  110 (763)
                      .++.+..+.   ..+..++++|+|+++++..  .++.++||.+.+++. ..+.      ..|...+.+++|.++  ++++
T Consensus         8 ~~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~--g~L~   81 (343)
T 2qe8_A            8 RLEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGN--GIVW   81 (343)
T ss_dssp             CCEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSS--SEEE
T ss_pred             eeEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCC--CcEE
Confidence            445555544   6789999999999998864  234356666655543 3331      134568999999998  6766


Q ss_pred             EEEeC-----CCcEEEEECCCCCCCCCCCCCCCCceeee------cccCceeEEEEecCCCCEEEEEe---CCCcEEEEE
Q 004290          111 VSGAG-----DAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHD  176 (763)
Q Consensus       111 ~s~s~-----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~s~s---~dg~i~iwd  176 (763)
                      ++-..     +..|.+||+.+++          .+..+.      .+...+..++++|+++.++++-.   .++.|.+||
T Consensus        82 v~D~g~~~~~~~~i~~~d~~tg~----------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d  151 (343)
T 2qe8_A           82 MLDNGNQSKSVPKLVAWDTLNNQ----------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVD  151 (343)
T ss_dssp             EEECHHHHTSCCEEEEEETTTTE----------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEE
T ss_pred             EEcCCCCcCCCCeEEEEECCCCe----------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEE
Confidence            65543     5789999998632          122221      22345789999986666666665   678999999


Q ss_pred             CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCC
Q 004290          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (763)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~  256 (763)
                      +.+++..            .+.+   ++.    ..  ....   ..+.++ +..+.+.+.++.++.|..           
T Consensus       152 ~~~g~~~------------r~~~---~~~----~~--~~~~---~~~~~~-g~~~~~~~~~g~~~~~~~-----------  195 (343)
T 2qe8_A          152 LQTGLAA------------RVLQ---GYP----GI--APED---IDLVID-GVPVQIGQPDGTVIRPHL-----------  195 (343)
T ss_dssp             TTTCCEE------------EECT---TCT----TT--SCCS---CCCEET-TEECBEECTTSCEECCCC-----------
T ss_pred             CCCCCEE------------EEec---CCC----cc--cccc---cceeEC-CEEEEeccCCCceeceec-----------
Confidence            9876421            0000   000    00  0000   223333 456666777777766532           


Q ss_pred             CCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC-eEEEEE
Q 004290          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-HVYLMD  307 (763)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~-~i~iwd  307 (763)
                                              .++.|+|+|+|+.|+.+..++ .|+.++
T Consensus       196 ------------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          196 ------------------------GVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             ------------------------CEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             ------------------------ccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence                                    278899999999888887655 444333

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.13  E-value=3.3e-08  Score=102.89  Aligned_cols=194  Identities=11%  Similarity=0.056  Sum_probs=122.0

Q ss_pred             EEeCCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe----------CCCcEE
Q 004290           56 ISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVR  120 (763)
Q Consensus        56 l~fsp~g~~Lasgs~-----D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s----------~dg~I~  120 (763)
                      ....|+++.+.....     ++.|.+.|..+++.+.++..+.. + . ++++|+  +++++.++          .++.|.
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spD--G~~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADD--GSFIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTT--SSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCC--CCEEEEEcccccccccCCCCCEEE
Confidence            445789988877765     67999999999999999854433 4 4 999999  67666654          367899


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecc-------cCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCCCCCCCCCCCCc
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQ  191 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~  191 (763)
                      +||..+..          .+..+.-.       ......++|+|+ +++++.+..  ++.|.++|+.+.+..        
T Consensus       113 viD~~t~~----------v~~~I~v~~g~r~~~g~~P~~~a~spD-Gk~lyVan~~~~~~VsVID~~t~~vv--------  173 (386)
T 3sjl_D          113 VFDPVTLL----------PTADIELPDAPRFLVGTYPWMTSLTPD-GKTLLFYQFSPAPAVGVVDLEGKAFK--------  173 (386)
T ss_dssp             EECTTTCC----------EEEEEEETTCCCCCBSCCGGGEEECTT-SSEEEEEECSSSCEEEEEETTTTEEE--------
T ss_pred             EEECCCCe----------EEEEEECCCccccccCCCCceEEEcCC-CCEEEEEEcCCCCeEEEEECCCCcEE--------
Confidence            99998732          23433211       124677999995 566666553  689999999987632        


Q ss_pred             ccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC-CCCCcccCCCCCCCCcccccccc
Q 004290          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPM  270 (763)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~  270 (763)
                            .        .+. .++      +..+.|.+...+++.+.||.+-+.++.. ++......              .
T Consensus       174 ------~--------tI~-v~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~--------------~  218 (386)
T 3sjl_D          174 ------R--------MLD-VPD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT--------------E  218 (386)
T ss_dssp             ------E--------EEE-CCS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC--------------C
T ss_pred             ------E--------EEE-CCC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec--------------c
Confidence                  0        000 000      1122344456788888899999999876 43311000              0


Q ss_pred             cccCCCCCccceeEEEEc-CCCCEEEEEeCCCeEEEEECCCC
Q 004290          271 HLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       271 ~~~~~g~~~~~i~~v~~s-pdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .+..  ....-.....|. ++|++++ .+.++.|++.|+.+.
T Consensus       219 ~~~~--~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~  257 (386)
T 3sjl_D          219 VFHP--EDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSG  257 (386)
T ss_dssp             CCSC--TTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred             eecc--ccccccccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence            0000  000011223564 7887555 555899999999774

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.10  E-value=1.1e-09  Score=127.39  Aligned_cols=204  Identities=12%  Similarity=0.054  Sum_probs=119.8

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc----
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE----  118 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D-----~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~----  118 (763)
                      +|...+..++|||||++||.++.+     .+|++||+.+++.+...  .+...+..++|+|+   +.|+.++.++.    
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--~~~~~~~~~~wspD---~~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--LKWVKFSGLAWLGN---DALLYSRFAEPKEGQ  234 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--EEEEESCCCEESTT---SEEEEEECCCC----
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--CCCceeccEEEECC---CEEEEEEecCccccc
Confidence            344578899999999999977654     46999999999876542  12222457899998   45655555543    


Q ss_pred             ----------EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-----CcEEEEECCCCCCC
Q 004290          119 ----------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSC  183 (763)
Q Consensus       119 ----------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-----g~i~iwd~~~~~~~  183 (763)
                                |++|++.++....      ..+.....+...+..+.|+| ++++|+..+.+     ..|++||+.++...
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~~------~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~  307 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSAD------QPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIG  307 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGGC------EEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEEC
T ss_pred             ccccCCCCCEEEEEECCCCchhC------EEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCc
Confidence                      8899987643111      11222223334588999999 55666555543     37999998765200


Q ss_pred             CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC----CcEEEEeCCCCC-CCcccCCCC
Q 004290          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLP-PLTSCQKRM  258 (763)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D----g~i~iwd~~~~~-~~~~~~~~~  258 (763)
                               +...+..              +...+... +.|+ ++.|+..+.+    +.|.+||+.++. ..       
T Consensus       308 ---------~~~~l~~--------------~~~~~~~~-~~~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~~-------  355 (741)
T 1yr2_A          308 ---------PVTALIP--------------DLKAQWDF-VDGV-GDQLWFVSGDGAPLKKIVRVDLSGSTPRF-------  355 (741)
T ss_dssp             ---------CCEEEEC--------------SSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEECSSSSCEE-------
T ss_pred             ---------ccEEecC--------------CCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCcccc-------
Confidence                     0011110              11122233 2365 5667666653    459999987631 11       


Q ss_pred             CCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004290          259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (763)
Q Consensus       259 ~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~  309 (763)
                            ..+.+      ++.. .+..+.|+ ++..+++...|+..+||.+.
T Consensus       356 ------~~l~~------~~~~-~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          356 ------DTVVP------ESKD-NLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             ------EEEEC------CCSS-EEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             ------EEEec------CCCC-eEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence                  11101      1122 37778887 55667777789888887654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.09  E-value=2.5e-08  Score=105.16  Aligned_cols=243  Identities=11%  Similarity=0.036  Sum_probs=148.6

Q ss_pred             ccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEccC------C
Q 004290           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------H   92 (763)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs----------~D~~v~iWd~~~~~~~~~~~~~------h   92 (763)
                      .+.+++  ..+.+++.++..-..+  .++|+|||++|+.+.          .++.|.+||..+.+.+..+..+      +
T Consensus        48 ~v~v~D--~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~  123 (373)
T 2mad_H           48 QQWVLD--AGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV  123 (373)
T ss_pred             EEEEEE--CCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence            444444  3455666677654444  899999999998875          3678999999998888776332      0


Q ss_pred             CCceEEEEEeeCCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCCCcee-eecccCceeEEEEecCCCCEEEEEeCC
Q 004290           93 SANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        93 ~~~V~~v~~~p~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      ......+.|+|+  +++|+.++.  ++.|.++| .+++          .+.. +. ..   .++.+.|.+...+++.+.|
T Consensus       124 g~~p~~~~~spD--G~~l~v~n~~~~~~v~viD-~t~~----------~~~~~i~-~~---~~~~~~~~~~~~~~~~~~d  186 (373)
T 2mad_H          124 GPYSWMNANTPN--NADLLFFQFAAGPAVGLVV-QGGS----------SDDQLLS-SP---TCYHIHPGAPSTFYLLCAQ  186 (373)
T ss_pred             CCCccceEECCC--CCEEEEEecCCCCeEEEEE-CCCC----------EEeEEcC-CC---ceEEEEeCCCceEEEEcCC
Confidence            133568999999  788888774  57899999 7632          2333 22 11   2355667666777888899


Q ss_pred             CcEEEEECCCCCCCCCCC-----CCCc-----------c---------cceEEEecCCCceeeccCCC----------CC
Q 004290          170 GTLRQHDFRQGSSCPPAG-----SSHQ-----------E---------CRNILLDLRCGAKRSLADPP----------KQ  214 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~-----~~~~-----------~---------~~~~~~~~~~~~~~~~~~~~----------~~  214 (763)
                      |.+.++|. +++......     ....           .         .....++........+....          ..
T Consensus       187 g~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~  265 (373)
T 2mad_H          187 GGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWR  265 (373)
T ss_pred             CCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccccee
Confidence            99999998 654331000     0000           0         01111222111101000000          00


Q ss_pred             ccceEEEEEeCCCCcEEEEEeC----------CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290          215 TLSLKSCDISSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (763)
Q Consensus       215 ~~~v~~i~~~p~~~~~l~sgs~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  284 (763)
                      ......++++|+ ++.+++...          .+.|.++|+.+++.+.++..                   +.   ...+
T Consensus       266 p~g~~~~~~s~d-~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-------------------g~---~p~~  322 (373)
T 2mad_H          266 PGGWQQVAYLKS-SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-------------------GH---DVDA  322 (373)
T ss_pred             cCceEeEEECCC-CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-------------------CC---CcCe
Confidence            112234778887 455555443          35799999998875544321                   11   3678


Q ss_pred             EEEcCCCC-EEEEEe-CCCeEEEEECCCCCccce
Q 004290          285 VTFSPNGE-EVLLSY-SGEHVYLMDVNHAGGRAM  316 (763)
Q Consensus       285 v~~spdg~-~l~~~s-~d~~i~iwd~~~~~~~~~  316 (763)
                      ++|+|||+ .++++. .++.|.+||+.+.+....
T Consensus       323 i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          323 ISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            99999999 677776 489999999999764433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.08  E-value=9.5e-08  Score=97.28  Aligned_cols=159  Identities=7%  Similarity=0.005  Sum_probs=106.2

Q ss_pred             cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      ..+...+.++++.++  +.++++...++.|.+||.. +...         ......+...+.+|++.+ ++.++++...+
T Consensus        11 ~~~~~~~~~i~~d~~--g~l~v~~~~~~~v~~~d~~-~~~~---------~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~   77 (299)
T 2z2n_A           11 TNQDTGPYGITVSDK--GKVWITQHKANMISCINLD-GKIT---------EYPLPTPDAKVMCLTISS-DGEVWFTENAA   77 (299)
T ss_dssp             CSSSCCEEEEEECTT--SCEEEEETTTTEEEEECTT-CCEE---------EEECSSTTCCEEEEEECT-TSCEEEEETTT
T ss_pred             CCcCCCccceEECCC--CCEEEEecCCCcEEEEcCC-CCeE---------EecCCcccCceeeEEECC-CCCEEEeCCCC
Confidence            345567999999998  7877777668899999987 3210         111122456789999998 55777776668


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      +.|..||.. ++.             ..+.+           +.....+.+++++|+ +.++++...++.|.+||. +++
T Consensus        78 ~~i~~~~~~-g~~-------------~~~~~-----------~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~-~g~  130 (299)
T 2z2n_A           78 NKIGRITKK-GII-------------KEYTL-----------PNPDSAPYGITEGPN-GDIWFTEMNGNRIGRITD-DGK  130 (299)
T ss_dssp             TEEEEECTT-SCE-------------EEEEC-----------SSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCC
T ss_pred             CeEEEECCC-CcE-------------EEEeC-----------CCcCCCceeeEECCC-CCEEEEecCCceEEEECC-CCC
Confidence            889999875 220             01110           112345789999996 677777777889999998 443


Q ss_pred             CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004290          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~  308 (763)
                      ... +            ..+      .. ...+..+++.++|+..++...++.|..||.
T Consensus       131 ~~~-~------------~~~------~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  169 (299)
T 2z2n_A          131 IRE-Y------------ELP------NK-GSYPSFITLGSDNALWFTENQNNAIGRITE  169 (299)
T ss_dssp             EEE-E------------ECS------ST-TCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             EEE-e------------cCC------CC-CCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence            110 0            000      01 114889999999987776666889999987

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.06  E-value=1.5e-07  Score=96.19  Aligned_cols=160  Identities=8%  Similarity=-0.019  Sum_probs=98.1

Q ss_pred             CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC
Q 004290           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  170 (763)
Q Consensus        91 ~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg  170 (763)
                      .+..-..+..|+|+. +.++++...++.|..||...+.           ...+ .....+.+++++| ++.++++ . ++
T Consensus        10 ~~~~~~Egp~w~~~~-~~l~~~d~~~~~i~~~d~~~~~-----------~~~~-~~~~~~~~i~~~~-dG~l~v~-~-~~   73 (297)
T 3g4e_A           10 ENCRCGESPVWEEVS-NSLLFVDIPAKKVCRWDSFTKQ-----------VQRV-TMDAPVSSVALRQ-SGGYVAT-I-GT   73 (297)
T ss_dssp             CCCSBEEEEEEETTT-TEEEEEETTTTEEEEEETTTCC-----------EEEE-ECSSCEEEEEEBT-TSSEEEE-E-TT
T ss_pred             cCCccccCCeEECCC-CEEEEEECCCCEEEEEECCCCc-----------EEEE-eCCCceEEEEECC-CCCEEEE-E-CC
Confidence            344456789999974 6677777788999999998632           2223 2456799999999 4565544 3 56


Q ss_pred             cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---------CcEE
Q 004290          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---------AFAR  241 (763)
Q Consensus       171 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---------g~i~  241 (763)
                      .|.+||..+++.            ..+.....         ......++.++++|+ ++++++...+         ..-.
T Consensus        74 ~l~~~d~~~g~~------------~~~~~~~~---------~~~~~~~~di~~d~d-G~l~~~~~~~~~~~~~~~~~~~~  131 (297)
T 3g4e_A           74 KFCALNWKEQSA------------VVLATVDN---------DKKNNRFNDGKVDPA-GRYFAGTMAEETAPAVLERHQGA  131 (297)
T ss_dssp             EEEEEETTTTEE------------EEEEECCT---------TCSSEEEEEEEECTT-SCEEEEEEECCSBTTBCCTTCEE
T ss_pred             eEEEEECCCCcE------------EEEEecCC---------CCCCCCCCCEEECCC-CCEEEecCCcccccccccCCCcE
Confidence            899999876541            11111110         012345789999997 5655544321         2334


Q ss_pred             EEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCeEEEEECC
Q 004290          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVN  309 (763)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~-s~d~~i~iwd~~  309 (763)
                      ||.+.....+..+              ..      .. ...+.++|+|+++.|+.+ +.++.|.+|++.
T Consensus       132 l~~~d~~g~~~~~--------------~~------~~-~~pngi~~spdg~~lyv~~~~~~~i~~~~~d  179 (297)
T 3g4e_A          132 LYSLFPDHHVKKY--------------FD------QV-DISNGLDWSLDHKIFYYIDSLSYSVDAFDYD  179 (297)
T ss_dssp             EEEECTTSCEEEE--------------EE------EE-SBEEEEEECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEECCCCEEEE--------------ee------cc-ccccceEEcCCCCEEEEecCCCCcEEEEecc
Confidence            5544421111000              00      00 136789999999977655 458899999874

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.06  E-value=3.4e-08  Score=104.76  Aligned_cols=191  Identities=12%  Similarity=0.061  Sum_probs=119.8

Q ss_pred             CCCCEEEEEeC-C----CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe----------CCCcEEEEEC
Q 004290           60 SKGSLLISGSD-D----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNL  124 (763)
Q Consensus        60 p~g~~Lasgs~-D----~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s----------~dg~I~iwd~  124 (763)
                      ++++.+..... +    +.|.++|..+++.+.++..+. .+  .+.++|+  ++.|+.+.          .++.|.++|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpD--gk~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAED--GSFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTT--SSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCC--CCEEEEEeccccccccCCCCCEEEEEEC
Confidence            46776665544 2    699999999999999995443 34  8999999  66666665          4678999999


Q ss_pred             CCCCCCCCCCCCCCCceeeec-------ccCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccce
Q 004290          125 SRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRN  195 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~sp~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~  195 (763)
                      .+.+          .+..+.-       .......+.|+| ++++++.+..  ++.|.+.|+.+.+..            
T Consensus       157 ~t~~----------vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv------------  213 (426)
T 3c75_H          157 VTFL----------PIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFD------------  213 (426)
T ss_dssp             TTCC----------EEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEE------------
T ss_pred             CCCc----------EEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEE------------
Confidence            8732          2333321       123456789999 5566666653  578999999987632            


Q ss_pred             EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (763)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (763)
                        ..        +.. + .     +....|++...+++.+.||.+.+.+..+++......         ..+.      .
T Consensus       214 --~~--------I~v-~-g-----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~---------~~~~------v  261 (426)
T 3c75_H          214 --RM--------LDV-P-D-----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT---------EVFH------T  261 (426)
T ss_dssp             --EE--------EEC-C-S-----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC---------CCCS------C
T ss_pred             --EE--------EEc-C-C-----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee---------eeec------c
Confidence              00        000 0 0     123344434567777788888888875443321100         0000      0


Q ss_pred             CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       276 g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +... ....+.|.+++..++..+..+.|++.|+...
T Consensus       262 ~~~p-~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~  296 (426)
T 3c75_H          262 EDEL-LINHPAFSLRSGRLVWPTYTGKIFQADLTAE  296 (426)
T ss_dssp             TTSC-BCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred             CCCc-eeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence            0000 1223578999988888888899999998763

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.05  E-value=5.9e-08  Score=103.82  Aligned_cols=164  Identities=12%  Similarity=0.046  Sum_probs=99.5

Q ss_pred             CceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC--c
Q 004290           94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--T  171 (763)
Q Consensus        94 ~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg--~  171 (763)
                      ..+..|+|+|+  ++++++...++.|++||...+.           +..+........ ++|+| ++..|+++..++  .
T Consensus       131 ~~P~~la~d~~--g~lyv~d~~~~~I~~id~~~g~-----------~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~  195 (409)
T 3hrp_A          131 KYMWGIAAVGN--NTVLAYQRDDPRVRLISVDDNK-----------VTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHT  195 (409)
T ss_dssp             CCEEEEEECST--TEEEEEETTTTEEEEEETTTTE-----------EEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCE
T ss_pred             CCceEEEEeCC--CCEEEEecCCCcEEEEECCCCE-----------EEEeeccCCCCc-eeEec-CCCcEEEEecCCCce
Confidence            46789999998  6888887778999999998532           233322233344 99999 556777777655  7


Q ss_pred             EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 004290          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (763)
Q Consensus       172 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~  251 (763)
                      |.+||.......           ..+-..          .......+.+++++|+++ .|+++..++.|+.||..++...
T Consensus       196 I~~~d~~~~~~~-----------~~~g~~----------~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~~~~  253 (409)
T 3hrp_A          196 VYVYMKASGWAP-----------TRIGQL----------GSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQEVT  253 (409)
T ss_dssp             EEEEEGGGTTCE-----------EEEEEC----------CTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTCCEE
T ss_pred             EEEEEcCCCcee-----------EEeeec----------cchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCCCEE
Confidence            888887654310           001000          001224567889999645 4555777889999999865311


Q ss_pred             cccCCCCCCCCcccccccccccCCCCCcc-ceeEEEEcCC-CCEEEEEeCCCeEEEEECCC
Q 004290          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSL-HLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~v~~spd-g~~l~~~s~d~~i~iwd~~~  310 (763)
                       .+.             ...  ..+.... +...++|+|+ +.++++-..++.|+.|+...
T Consensus       254 -~~~-------------~~~--~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g  298 (409)
T 3hrp_A          254 -LIK-------------QLE--LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG  298 (409)
T ss_dssp             -EEE-------------ECC--CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred             -EEe-------------ccc--ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence             100             000  0111110 1238999996 55444555688999998765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.99  E-value=1e-07  Score=99.12  Aligned_cols=259  Identities=10%  Similarity=0.075  Sum_probs=157.7

Q ss_pred             ccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEccCC------
Q 004290           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGH------   92 (763)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs----------~D~~v~iWd~~~~~~~~~~~~~h------   92 (763)
                      .+.+.+  ..+.+.+.++..-..+ . ++++|||++|+.++          .++.|.+||..+++.+.++..+.      
T Consensus        60 ~V~ViD--~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~  135 (386)
T 3sjl_D           60 QQFVID--GEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV  135 (386)
T ss_dssp             EEEEEE--TTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             EEEEEE--CCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence            444444  4566777777654455 4 99999999887665          36789999999999888874322      


Q ss_pred             CCceEEEEEeeCCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC
Q 004290           93 SANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  170 (763)
Q Consensus        93 ~~~V~~v~~~p~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg  170 (763)
                      ......+.|+|+  |++++.+..  ++.|.++|+.+.          +.+..+.- .+   +..+.|.+.+.+++.+.||
T Consensus       136 g~~P~~~a~spD--Gk~lyVan~~~~~~VsVID~~t~----------~vv~tI~v-~g---~~~~~P~g~~~~~~~~~DG  199 (386)
T 3sjl_D          136 GTYPWMTSLTPD--GKTLLFYQFSPAPAVGVVDLEGK----------AFKRMLDV-PD---CYHIFPTAPDTFFMHCRDG  199 (386)
T ss_dssp             SCCGGGEEECTT--SSEEEEEECSSSCEEEEEETTTT----------EEEEEEEC-CS---EEEEEEEETTEEEEEETTS
T ss_pred             CCCCceEEEcCC--CCEEEEEEcCCCCeEEEEECCCC----------cEEEEEEC-CC---cceeecCCCceeEEECCCC
Confidence            124667999999  788887764  689999999973          22344421 11   1223354666777888888


Q ss_pred             cEEEEECCC-CCCC----CCCCCC--C----c----ccceEEEecCCCceeeccCCCCC---------------------
Q 004290          171 TLRQHDFRQ-GSSC----PPAGSS--H----Q----ECRNILLDLRCGAKRSLADPPKQ---------------------  214 (763)
Q Consensus       171 ~i~iwd~~~-~~~~----~~~~~~--~----~----~~~~~~~~~~~~~~~~~~~~~~~---------------------  214 (763)
                      ++.+.++.. ++..    ......  .    .    .....+|....+....+ .....                     
T Consensus       200 ~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~-d~~~~~~~v~~~~~~~~~~~~~~g~~  278 (386)
T 3sjl_D          200 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQI-DLSSGDAKFLPAVEALTEAERADGWR  278 (386)
T ss_dssp             CEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEE-ECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred             CEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEE-ECCCCcceeecceecccccccccccc
Confidence            888888876 3320    000000  0    0    01122222222211111 11000                     


Q ss_pred             ccceEEEEEeCCCCcEEEEEeC----------CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290          215 TLSLKSCDISSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (763)
Q Consensus       215 ~~~v~~i~~~p~~~~~l~sgs~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  284 (763)
                      ......++++|+. +.+++...          .+.|.++|+.+++.+..+..                      ...+.+
T Consensus       279 p~g~q~~a~~~~~-~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v----------------------g~~~~~  335 (386)
T 3sjl_D          279 PGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----------------------GHEIDS  335 (386)
T ss_dssp             ECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----------------------EEEECE
T ss_pred             CCCcceeeECCCC-CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC----------------------CCCcce
Confidence            1112246778874 55555432          25799999998876544321                      114789


Q ss_pred             EEEcCCCC-EEEEEeC-CCeEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004290          285 VTFSPNGE-EVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (763)
Q Consensus       285 v~~spdg~-~l~~~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (763)
                      |+++||++ +|+++.. ++.|.++|..+++ .............+.++++
T Consensus       336 lavs~D~~~~ly~tn~~~~~VsViD~~t~k-~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          336 INVSQDEKPLLYALSTGDKTLYIHDAESGE-ELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EEECSSSSCEEEEEETTTTEEEEEETTTCC-EEEEECCCCSSCCEEEECC
T ss_pred             EEECCCCCeEEEEEcCCCCeEEEEECCCCc-EEEEecCCCCCceeEECCc
Confidence            99999997 6776554 8999999999965 4455555555666666665

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.97  E-value=1.1e-07  Score=101.58  Aligned_cols=219  Identities=9%  Similarity=0.016  Sum_probs=137.8

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC--cEEEEECCCCC
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFS  128 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg--~I~iwd~~~~~  128 (763)
                      .....|+|+++|+++++...++.|++||..++...... ... .... ++|+|+  ++.|+++..++  .|.+|+.....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~-~~~-~~~~-ia~~~~--g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH-PGF-KGGK-PAVTKD--KQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-ETC-CBCB-CEECTT--SSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-ccC-CCCc-eeEecC--CCcEEEEecCCCceEEEEEcCCCc
Confidence            46789999999998888888899999999988766554 332 2233 999999  68888888766  78888876421


Q ss_pred             CCCCCCCCCCCceee---ec-ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          129 GRGLDDNAITPSALY---QC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~---~~-h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                      .          ...+   .. ....+.+++++|+++.+++ +..++.|+.||..++...            .+...... 
T Consensus       206 ~----------~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~------------~~~~~~~~-  261 (409)
T 3hrp_A          206 A----------PTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT------------LIKQLELS-  261 (409)
T ss_dssp             C----------EEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE------------EEEECCCC-
T ss_pred             e----------eEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE------------EEeccccc-
Confidence            1          1122   12 4567889999996555554 667889999998765411            11000000 


Q ss_pred             eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (763)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  284 (763)
                            ......+...++|+|+++.++++-..++.|+.|+....  +..+......    ..+... ......-. ....
T Consensus       262 ------g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~----~g~~dg-~~~~~~~~-~P~g  327 (409)
T 3hrp_A          262 ------GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQ----KTVQDG-LREEALFA-QPNG  327 (409)
T ss_dssp             ------SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTC----CSCBCE-EGGGCBCS-SEEE
T ss_pred             ------CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCC----CCcCCC-cccccEeC-CCeE
Confidence                  00001111389999965777777778899999987642  1111000000    000000 00000011 3789


Q ss_pred             EEEcCCCCEEEEEe-CCCeEEEEECCCCC
Q 004290          285 VTFSPNGEEVLLSY-SGEHVYLMDVNHAG  312 (763)
Q Consensus       285 v~~spdg~~l~~~s-~d~~i~iwd~~~~~  312 (763)
                      ++++|+|+++++-+ .++.|+.|++.++.
T Consensus       328 ia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          328 MTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             EEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             EEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            99999999777777 78999999977643

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.94  E-value=5.4e-08  Score=100.07  Aligned_cols=205  Identities=10%  Similarity=0.092  Sum_probs=131.9

Q ss_pred             ccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCeEEEE-Ecc--C-CCCceEEEEEeeCCCCcEEEEEeCC-------
Q 004290           49 HQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHS-IET--G-HSANVFCTKFVPETSDELVVSGAGD-------  116 (763)
Q Consensus        49 H~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~~~~~-~~~--~-h~~~V~~v~~~p~~~~~~l~s~s~d-------  116 (763)
                      +...+.+++++++ |+++++... ..|.+||.. ++.... ...  + ....+.++++.|+  ++++++...+       
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~  144 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADMR-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADY  144 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEETT-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCC
T ss_pred             CCCCCceEEEecCCCcEEEEECC-CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccc
Confidence            5677999999999 776665544 479999998 665432 211  1 1245889999998  6777776654       


Q ss_pred             --------CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEe----cCCCCEEEEEeCCCcEEEEECC-CCCCC
Q 004290          117 --------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE----VGNPHVVWSASEDGTLRQHDFR-QGSSC  183 (763)
Q Consensus       117 --------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s----p~~~~~l~s~s~dg~i~iwd~~-~~~~~  183 (763)
                              +.|..||.. +.           ...+..+......++|+    |++..++++...++.|.+||+. .++..
T Consensus       145 ~~~~~~~~~~l~~~~~~-g~-----------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~  212 (314)
T 1pjx_A          145 TRSMQEKFGSIYCFTTD-GQ-----------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE  212 (314)
T ss_dssp             CBTTSSSCEEEEEECTT-SC-----------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE
T ss_pred             cccccCCCCeEEEECCC-CC-----------EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc
Confidence                    456666654 11           22223344567889999    8443455555678899999976 22100


Q ss_pred             CCCCCCCcccceEEEecCCCceeeccCCCCCc-cceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQT-LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (763)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (763)
                               ....+..           .+.+. ..+..++++++ ++++++...++.|.+||..+++.+..+.       
T Consensus       213 ---------~~~~~~~-----------~~~~~~~~p~~i~~d~~-G~l~v~~~~~~~i~~~d~~~g~~~~~~~-------  264 (314)
T 1pjx_A          213 ---------NKKVWGH-----------IPGTHEGGADGMDFDED-NNLLVANWGSSHIEVFGPDGGQPKMRIR-------  264 (314)
T ss_dssp             ---------EEEEEEE-----------CCCCSSCEEEEEEEBTT-CCEEEEEETTTEEEEECTTCBSCSEEEE-------
T ss_pred             ---------cceEEEE-----------CCCCCCCCCCceEECCC-CCEEEEEcCCCEEEEEcCCCCcEeEEEe-------
Confidence                     0001111           11222 45678999997 6788877788999999988665332211       


Q ss_pred             cccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCC
Q 004290          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHA  311 (763)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~~  311 (763)
                                   .+. ..+.+++|+|+|++|++++ .++.|..|++...
T Consensus       265 -------------~~~-~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          265 -------------CPF-EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             -------------CSS-SCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             -------------CCC-CCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence                         011 1489999999999666554 5789999998763

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.92  E-value=1.3e-08  Score=117.17  Aligned_cols=207  Identities=15%  Similarity=0.108  Sum_probs=126.1

Q ss_pred             cccCceEEEEeCCCCCEEEE-----EeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc----
Q 004290           48 GHQGCVNAISWNSKGSLLIS-----GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE----  118 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Las-----gs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~----  118 (763)
                      +|...+..++|||||++||-     |+.+.+|++||+.+++.+......  .....++|+ +  ++.|+.++.+..    
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-D--g~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-G--NEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-T--TTEEEEEESSCCC---
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-C--CCEEEEEEecCccccc
Confidence            46667899999999999984     333467999999999865432111  113578899 8  688888887743    


Q ss_pred             ---------EEEEECCCCCCCCCCCCCCCCceeeec-ccCceeEEEEecCCCCEEEEEeC---CCcEEEEECCCCCCCCC
Q 004290          119 ---------VRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASE---DGTLRQHDFRQGSSCPP  185 (763)
Q Consensus       119 ---------I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~s~s~---dg~i~iwd~~~~~~~~~  185 (763)
                               |++|++.+.....      ..+..... |...+..+.|+|++..++++.+.   ...|+++|+.++...  
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~------~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~--  272 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDD------RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP--  272 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGC------EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC--
T ss_pred             ccccCCCcEEEEEECCCCcccc------eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc--
Confidence                     9999988643211      11222233 45567889999965445455543   257999998776311  


Q ss_pred             CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---CcEEEEeCCCCCCCcccCCCCCCCC
Q 004290          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPP  262 (763)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~  262 (763)
                              ...+.              .+....... |+++++.++++...+   +.|..+|+.++...           
T Consensus       273 --------~~~l~--------------~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-----------  318 (693)
T 3iuj_A          273 --------LLTVQ--------------GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-----------  318 (693)
T ss_dssp             --------CEEEE--------------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-----------
T ss_pred             --------eEEEe--------------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-----------
Confidence                    01111              011122232 556545555555544   57888998865320           


Q ss_pred             cccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCC
Q 004290          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE--HVYLMDVNHA  311 (763)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~--~i~iwd~~~~  311 (763)
                      ..+.+.+       +.. .+.  .|++++++|+.... ++  .|++|++..+
T Consensus       319 ~~~~l~~-------~~~-~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          319 HWRDLIP-------ERQ-QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             GCEEEEC-------CCS-SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             ccEEEec-------CCC-CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence            0111111       222 133  88999998888776 44  7899998753

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.91  E-value=1.9e-07  Score=95.36  Aligned_cols=235  Identities=11%  Similarity=0.068  Sum_probs=142.9

Q ss_pred             eeccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004290           45 ELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (763)
Q Consensus        45 ~l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd  123 (763)
                      .+..+..--.+..|+|+ +.++++...++.|..||..+++.. .+  .....+.+++++|+  ++++++ . ++.|.+||
T Consensus         7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~d--G~l~v~-~-~~~l~~~d   79 (297)
T 3g4e_A            7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQS--GGYVAT-I-GTKFCALN   79 (297)
T ss_dssp             EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTT--SSEEEE-E-TTEEEEEE
T ss_pred             EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCC--CCEEEE-E-CCeEEEEE
Confidence            34445556678999995 557777778899999999887653 33  24567999999999  675554 4 56899999


Q ss_pred             CCCCCCCCCCCCCCCCceeee--cccCceeEEEEecCCCCEEEEEeCC---------CcEEEEECCCCCCCCCCCCCCcc
Q 004290          124 LSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASED---------GTLRQHDFRQGSSCPPAGSSHQE  192 (763)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~  192 (763)
                      ..++..        ..+....  .....++.++++| +++++++....         ....+|.+......         
T Consensus        80 ~~~g~~--------~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~---------  141 (297)
T 3g4e_A           80 WKEQSA--------VVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV---------  141 (297)
T ss_dssp             TTTTEE--------EEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE---------
T ss_pred             CCCCcE--------EEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE---------
Confidence            875321        1111111  1124578899999 45665544221         22344444322100         


Q ss_pred             cceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC--CCCCCcccCCCCCCCCcccccccc
Q 004290          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR--MLPPLTSCQKRMSPPPCVNYFCPM  270 (763)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~  270 (763)
                        ..+.              ......+.++|+|++..++++.+.++.|.+||+.  ++....           .+.+.. 
T Consensus       142 --~~~~--------------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~-----------~~~~~~-  193 (297)
T 3g4e_A          142 --KKYF--------------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN-----------RRSVYK-  193 (297)
T ss_dssp             --EEEE--------------EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE-----------EEEEEE-
T ss_pred             --EEEe--------------eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC-----------cEEEEE-
Confidence              0010              1123457899999843344566678899999874  432100           000000 


Q ss_pred             cccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeec-cCCCCc
Q 004290          271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLNGL  336 (763)
Q Consensus       271 ~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~  336 (763)
                       +  .... .....++++++|++.++...++.|..||..+++.......+...+..++|. |+.+.+
T Consensus       194 -~--~~~~-~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L  256 (297)
T 3g4e_A          194 -L--EKEE-QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEM  256 (297)
T ss_dssp             -C--CGGG-CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEE
T ss_pred             -C--CCCC-CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEE
Confidence             0  0011 147889999999877777778999999998766444444444567788887 654443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.90  E-value=1.3e-07  Score=100.38  Aligned_cols=254  Identities=10%  Similarity=0.058  Sum_probs=151.5

Q ss_pred             cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEccC------
Q 004290           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------   91 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs----------~D~~v~iWd~~~~~~~~~~~~~------   91 (763)
                      ..+.+.+  ..+.+.+.++.--..+  .++++|||++|+.+.          .++.|.++|..+++.+..+..+      
T Consensus        99 ~~VsVID--~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~  174 (426)
T 3c75_H           99 TQQFVID--GSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL  174 (426)
T ss_dssp             EEEEEEE--TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred             CeEEEEE--CCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence            4555555  5666777777644455  899999999887775          3678999999999988887432      


Q ss_pred             CCCceEEEEEeeCCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           92 HSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        92 h~~~V~~v~~~p~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      .......+.|+|+  +++++.+..  ++.|.+.|+.+.+          .+..+.- .+   +....|.+...+++.+.|
T Consensus       175 ~g~~P~~~~~spD--Gk~lyV~n~~~~~~VsVID~~t~k----------vv~~I~v-~g---~~~~~p~g~~~~v~~~~d  238 (426)
T 3c75_H          175 VGTYQWMNALTPD--NKNLLFYQFSPAPAVGVVDLEGKT----------FDRMLDV-PD---CYHIFPASPTVFYMNCRD  238 (426)
T ss_dssp             BSCCGGGSEECTT--SSEEEEEECSSSCEEEEEETTTTE----------EEEEEEC-CS---EEEEEEEETTEEEEEETT
T ss_pred             cCCCcceEEEcCC--CCEEEEEecCCCCeEEEEECCCCe----------EEEEEEc-CC---ceeeccCCCcEEEEEcCC
Confidence            1234567899999  788888774  5789999998732          2333331 11   123344444666677777


Q ss_pred             CcEEEEECCCCCCCC----CC--CC------C--Ccccc----------eEEEecCCCceeeccCC-----CC-----Cc
Q 004290          170 GTLRQHDFRQGSSCP----PA--GS------S--HQECR----------NILLDLRCGAKRSLADP-----PK-----QT  215 (763)
Q Consensus       170 g~i~iwd~~~~~~~~----~~--~~------~--~~~~~----------~~~~~~~~~~~~~~~~~-----~~-----~~  215 (763)
                      |.+.+.++..++...    ..  ..      .  .....          ...++........+...     ..     ..
T Consensus       239 G~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p  318 (426)
T 3c75_H          239 GSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP  318 (426)
T ss_dssp             SSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred             CCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence            887777774433210    00  00      0  00011          11222221111100000     00     00


Q ss_pred             cceEEEEEeCCCCcEEEEEeC----------CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEE
Q 004290          216 LSLKSCDISSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (763)
Q Consensus       216 ~~v~~i~~~p~~~~~l~sgs~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v  285 (763)
                      .....++++|++ +.+++...          .+.|.++|+.+++.+..+..                      ......+
T Consensus       319 ~g~~~va~s~dg-~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----------------------g~~P~gi  375 (426)
T 3c75_H          319 GGWQQTAYHRQS-DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL----------------------GHEIDSI  375 (426)
T ss_dssp             CSSSCEEEEGGG-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----------------------EEEECEE
T ss_pred             CCceeeEEcCCC-CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC----------------------CCCcCeE
Confidence            111136899974 45555432          35799999999876554421                      0137889


Q ss_pred             EEcCCCC-EEEEEe-CCCeEEEEECCCCCccceEeecCCCC
Q 004290          286 TFSPNGE-EVLLSY-SGEHVYLMDVNHAGGRAMRYTVGDAS  324 (763)
Q Consensus       286 ~~spdg~-~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~~  324 (763)
                      +|+|||+ +++++. .++.|.++|+.+.+........+...
T Consensus       376 a~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P  416 (426)
T 3c75_H          376 NVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGP  416 (426)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSC
T ss_pred             EEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCC
Confidence            9999999 888887 49999999999976443332334333

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.89  E-value=7.6e-07  Score=90.52  Aligned_cols=201  Identities=6%  Similarity=-0.034  Sum_probs=135.6

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~  127 (763)
                      .+...+.++++.++|.++++...++.|..||.. ++............+.++++.++  +.++++...++.|..+|.. +
T Consensus        59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~-g  134 (300)
T 2qc5_A           59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN--GDIWFTQLNGDRIGKLTAD-G  134 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST--TCEEEEETTTTEEEEECTT-S
T ss_pred             CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCC--CCEEEEccCCCeEEEECCC-C
Confidence            344679999999999988887778899999988 55432221334467899999988  7888877778899999876 2


Q ss_pred             CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (763)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (763)
                      ..        . ...+......+..+++.+ +++++++...++.|..||. +++..             .+.        
T Consensus       135 ~~--------~-~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~-------------~~~--------  182 (300)
T 2qc5_A          135 TI--------Y-EYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLE-------------EYP--------  182 (300)
T ss_dssp             CE--------E-EEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEE-------------EEE--------
T ss_pred             CE--------E-EccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEE-------------Eee--------
Confidence            21        0 111222345788999998 5567766666788999997 43310             011        


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (763)
Q Consensus       208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~  287 (763)
                         .+.....+..++++++ ++++++....+.|.+||. +++... +            ..+      ... ..+.++++
T Consensus       183 ---~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~-~------------~~~------~~~-~~~~~i~~  237 (300)
T 2qc5_A          183 ---LPTNAAAPVGITSGND-GALWFVEIMGNKIGRITT-TGEISE-Y------------DIP------TPN-ARPHAITA  237 (300)
T ss_dssp             ---CSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEE-E------------ECS------STT-CCEEEEEE
T ss_pred             ---CCCCCCCcceEEECCC-CCEEEEccCCCEEEEEcC-CCcEEE-E------------ECC------CCC-CCceEEEE
Confidence               1122345789999996 677776666778999998 332111 0            000      011 14889999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECC
Q 004290          288 SPNGEEVLLSYSGEHVYLMDVN  309 (763)
Q Consensus       288 spdg~~l~~~s~d~~i~iwd~~  309 (763)
                      +++|+..++...++.|..|+..
T Consensus       238 d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          238 GKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             CSTTCEEEEETTTTEEEEECTT
T ss_pred             CCCCCEEEeccCCCeEEEECCC
Confidence            9999866666667999999983

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.82  E-value=9.2e-07  Score=90.56  Aligned_cols=159  Identities=14%  Similarity=0.102  Sum_probs=102.3

Q ss_pred             CCCCceEEEEEeeCCCCc-EEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           91 GHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        91 ~h~~~V~~v~~~p~~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                      ..........|+|+  ++ ++++...++.|..|+... .           ...+..+...+..+++++ +++++++...+
T Consensus        42 ~~~~~~egp~~~~~--g~~l~~~d~~~~~i~~~~~~g-~-----------~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~  106 (305)
T 3dr2_A           42 DQATWSEGPAWWEA--QRTLVWSDLVGRRVLGWREDG-T-----------VDVLLDATAFTNGNAVDA-QQRLVHCEHGR  106 (305)
T ss_dssp             CCCSSEEEEEEEGG--GTEEEEEETTTTEEEEEETTS-C-----------EEEEEESCSCEEEEEECT-TSCEEEEETTT
T ss_pred             cCCcCccCCeEeCC--CCEEEEEECCCCEEEEEeCCC-C-----------EEEEeCCCCccceeeECC-CCCEEEEECCC
Confidence            34456788999999  56 777777889999998742 1           344555667889999999 55766655556


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEE----EeC---------
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV----GGS---------  236 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~s----gs~---------  236 (763)
                      +.|.+||.. ++.            ..+.....+         .....++.++++|+ ++++++    |..         
T Consensus       107 ~~v~~~~~~-g~~------------~~~~~~~~~---------~~~~~~~~i~~d~d-G~l~~td~~~g~~~~~~~~~~~  163 (305)
T 3dr2_A          107 RAITRSDAD-GQA------------HLLVGRYAG---------KRLNSPNDLIVARD-GAIWFTDPPFGLRKPSQGCPAD  163 (305)
T ss_dssp             TEEEEECTT-SCE------------EEEECEETT---------EECSCCCCEEECTT-SCEEEECCSGGGSCGGGSCCCC
T ss_pred             CEEEEECCC-CCE------------EEEEeccCC---------CccCCCCCEEECCC-CCEEEeCcCCCccccccccccc
Confidence            789999875 321            111111000         01134667899997 677775    332         


Q ss_pred             ----CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC------CeEEEE
Q 004290          237 ----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG------EHVYLM  306 (763)
Q Consensus       237 ----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d------~~i~iw  306 (763)
                          .+.|..||..+++...              ..  .+       ...+.++|+||++.|+.+...      +.|++|
T Consensus       164 ~~~~~~~v~~~d~~~g~~~~--------------~~--~~-------~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~  220 (305)
T 3dr2_A          164 PELAHHSVYRLPPDGSPLQR--------------MA--DL-------DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAF  220 (305)
T ss_dssp             CSSSCEEEEEECSSSCCCEE--------------EE--EE-------SSEEEEEECTTSSEEEEEECCC---CCCEEEEE
T ss_pred             cccCCCeEEEEcCCCCcEEE--------------Ee--cC-------CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEE
Confidence                2457777765553211              00  01       136789999999988877665      688888


Q ss_pred             ECCC
Q 004290          307 DVNH  310 (763)
Q Consensus       307 d~~~  310 (763)
                      ++..
T Consensus       221 ~~~~  224 (305)
T 3dr2_A          221 AWRD  224 (305)
T ss_dssp             EEET
T ss_pred             EecC
Confidence            8765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.82  E-value=1e-06  Score=91.24  Aligned_cols=224  Identities=10%  Similarity=-0.017  Sum_probs=133.1

Q ss_pred             cCceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290           50 QGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (763)
Q Consensus        50 ~~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~  128 (763)
                      ..-..+..|+|++ .++++...++.|.+||..+++.. .+  .....+.++.|+|+  ++++++. .+ .|.+||..++.
T Consensus        48 ~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~v~~i~~~~d--g~l~v~~-~~-gl~~~d~~~g~  120 (326)
T 2ghs_A           48 MLLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH--ALPFMGSALAKISD--SKQLIAS-DD-GLFLRDTATGV  120 (326)
T ss_dssp             CSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE--ECSSCEEEEEEEET--TEEEEEE-TT-EEEEEETTTCC
T ss_pred             CCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE--ECCCcceEEEEeCC--CeEEEEE-CC-CEEEEECCCCc
Confidence            3345788999974 56677777899999999887653 23  13467999999999  6776654 44 49999987532


Q ss_pred             CCCCCCCCCCCceeee--cccCceeEEEEecCCCCEEEEEeC------CCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290          129 GRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  200 (763)
                      .        ..+....  .....+++++++|+ +.++++...      .+.|..+|  +++.            ..+.  
T Consensus       121 ~--------~~~~~~~~~~~~~~~~~i~~d~~-G~l~v~~~~~~~~~~~~~l~~~~--~g~~------------~~~~--  175 (326)
T 2ghs_A          121 L--------TLHAELESDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA--KGKV------------TKLF--  175 (326)
T ss_dssp             E--------EEEECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE--TTEE------------EEEE--
T ss_pred             E--------EEEeeCCCCCCCCCCCCEEECCC-CCEEEEeCCCcCCCCceEEEEEe--CCcE------------EEee--
Confidence            1        0011111  11246889999994 466554432      23455555  2220            0010  


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCCCCcEE-EEEeCCCcEEEEeCC--CC-CCCcccCCCCCCCCcccccccccccCCC
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRR--ML-PPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l-~sgs~Dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (763)
                                  ......+.++|+|+ ++.| ++.+.++.|.+||+.  ++ ....           ...+..  +  .+
T Consensus       176 ------------~~~~~~~~i~~s~d-g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----------~~~~~~--~--~~  227 (326)
T 2ghs_A          176 ------------ADISIPNSICFSPD-GTTGYFVDTKVNRLMRVPLDARTGLPTGK-----------AEVFID--S--TG  227 (326)
T ss_dssp             ------------EEESSEEEEEECTT-SCEEEEEETTTCEEEEEEBCTTTCCBSSC-----------CEEEEE--C--TT
T ss_pred             ------------CCCcccCCeEEcCC-CCEEEEEECCCCEEEEEEcccccCCcccC-----------ceEEEE--C--CC
Confidence                        01123578999998 5555 555567899999986  43 2110           000000  0  00


Q ss_pred             CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeec-cCCCC
Q 004290          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLNG  335 (763)
Q Consensus       277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-p~~~~  335 (763)
                      ... ....++++++|.+.++...++.|.+|+. +++...........+..++|. |+...
T Consensus       228 ~~~-~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~  285 (326)
T 2ghs_A          228 IKG-GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASR  285 (326)
T ss_dssp             SSS-EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCE
T ss_pred             CCC-CCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCE
Confidence            111 3678999999987777777889999998 434333333333456677787 65443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.80  E-value=8.7e-08  Score=99.91  Aligned_cols=256  Identities=9%  Similarity=-0.011  Sum_probs=150.0

Q ss_pred             ccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEccCC------
Q 004290           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGH------   92 (763)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs----------~D~~v~iWd~~~~~~~~~~~~~h------   92 (763)
                      .+.+.+  ..+.+.+.++..-..+  .+.|+|||++|..+.          .++.|.+||+.+++.+.++..+.      
T Consensus        47 ~vsvID--~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~  122 (368)
T 1mda_H           47 ENWVSC--AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV  122 (368)
T ss_dssp             EEEEEE--TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred             eEEEEE--CCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence            344444  5667778887654555  799999999888876          36889999999999999884320      


Q ss_pred             CCceEEEEEeeCCCCcEEEEEeC--CCcEEE--EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC
Q 004290           93 SANVFCTKFVPETSDELVVSGAG--DAEVRL--FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE  168 (763)
Q Consensus        93 ~~~V~~v~~~p~~~~~~l~s~s~--dg~I~i--wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~  168 (763)
                      ......+.|+|+  +++++.+..  +..|.+  +|..+             +..+.- .+.   +.+.|++...+++.+.
T Consensus       123 g~~P~~ia~SpD--Gk~lyVan~~~~~~v~V~~iD~~t-------------v~~i~v-~~~---~~~~p~g~~~~~~~~~  183 (368)
T 1mda_H          123 GPRVHIIGNCAS--SACLLFFLFGSSAAAGLSVPGASD-------------DQLTKS-ASC---FHIHPGAAATHYLGSC  183 (368)
T ss_dssp             SCCTTSEEECTT--SSCEEEEECSSSCEEEEEETTTEE-------------EEEEEC-SSC---CCCEEEETTEEECCCC
T ss_pred             CCCcceEEEcCC--CCEEEEEccCCCCeEEEEEEchhh-------------ceEEEC-CCc---eEEccCCCeEEEEEcC
Confidence            124568999999  788888765  456888  88864             122211 111   1233545566667777


Q ss_pred             CCcEEEEECCC-----CCCCC----CCCCC-----Ccc---------cceEEEecCCCceeeccCCCC-------C---c
Q 004290          169 DGTLRQHDFRQ-----GSSCP----PAGSS-----HQE---------CRNILLDLRCGAKRSLADPPK-------Q---T  215 (763)
Q Consensus       169 dg~i~iwd~~~-----~~~~~----~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~-------~---~  215 (763)
                      |+.+.+.|+.+     ++...    ....+     ...         .....++........+....-       .   .
T Consensus       184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p  263 (368)
T 1mda_H          184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRS  263 (368)
T ss_dssp             TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred             CCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEecccccccccccc
Confidence            88888888776     22110    00000     000         011122221111000000000       0   0


Q ss_pred             cceEEEEEeCCCCcEEEEEeC---------CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004290          216 LSLKSCDISSTRPHLLLVGGS---------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (763)
Q Consensus       216 ~~v~~i~~~p~~~~~l~sgs~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~  286 (763)
                      .....++|+|++ +.++++..         ++.+.++|+.+++.+..+..                      ......++
T Consensus       264 ~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----------------------g~~p~gi~  320 (368)
T 1mda_H          264 AGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----------------------GHDSDAII  320 (368)
T ss_dssp             CSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----------------------EEEECEEE
T ss_pred             CcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----------------------CCCcceEE
Confidence            011126899984 55555432         23566999998875544321                      11378899


Q ss_pred             EcCCCCE-EEEEe-CCCeEEEEECCCCCccceEeecCCCCeeeeecc
Q 004290          287 FSPNGEE-VLLSY-SGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (763)
Q Consensus       287 ~spdg~~-l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (763)
                      |+|||++ +++.. .++.|.++|+.+.+ .......+.....+++.+
T Consensus       321 ~s~Dg~~l~va~~~~~~~VsVID~~t~k-vv~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          321 AAQDGASDNYANSAGTEVLDIYDAASDQ-DQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             ECCSSSCEEEEEETTTTEEEEEESSSCE-EEEECCCCSCCCEEECCC
T ss_pred             ECCCCCEEEEEccCCCCeEEEEECCCCc-EEEEEECCCCCCEEEeec
Confidence            9999985 55555 49999999999954 444445555555555543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.80  E-value=6.2e-08  Score=101.28  Aligned_cols=146  Identities=16%  Similarity=0.151  Sum_probs=103.3

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~  127 (763)
                      .+.. |+.|+|  |+.+|+++ .++.|++||+.+....... ..|...|.++.+.+.    .++++..||.|.+||+...
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~  156 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTK  156 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS----EEEEEETTSEEEEEETTTC
T ss_pred             eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcc-ceeecceeeEEecCC----CEEEEECCCCEEEEEccCC
Confidence            4666 999999  99999999 8899999999876554445 567778998888765    2888899999999999863


Q ss_pred             CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (763)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (763)
                      .           .   ..+...|++++|+|.+   ++.|..||++++|+....+..         ....+   ...  ..
T Consensus       157 ~-----------~---~~~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~---------~k~~I---~~P--p~  205 (388)
T 1xip_A          157 S-----------T---KQLAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEME---------KQFEF---SLP--SE  205 (388)
T ss_dssp             C-----------E---EEEEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEE---------EEEEE---CCC--HH
T ss_pred             c-----------c---ccccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCcccc---------cccee---cCC--cc
Confidence            2           1   1255689999999944   667999999999987665410         00000   000  00


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEE
Q 004290          208 LADPPKQTLSLKSCDISSTRPHLLLVG  234 (763)
Q Consensus       208 ~~~~~~~~~~v~~i~~~p~~~~~l~sg  234 (763)
                      +....++...|.++.|.++ ..++++-
T Consensus       206 ~~~~~~~~~~V~sI~wl~~-~~flv~y  231 (388)
T 1xip_A          206 LEELPVEEYSPLSVTILSP-QDFLAVF  231 (388)
T ss_dssp             HHTSCTTTSEEEEEEESSS-SEEEEEE
T ss_pred             cccccCCCeeEEEEEEecC-CeEEEEE
Confidence            1111235678999999996 5666653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.78  E-value=1.3e-07  Score=98.58  Aligned_cols=79  Identities=8%  Similarity=-0.047  Sum_probs=63.9

Q ss_pred             ccCCCCEEEEecC---------CCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCC-eEEEEe-CCCcEEEEcCCCCCC
Q 004290          635 LGQRGDYIASGSD---------DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSG-IDNTIKIWTPSASVP  703 (763)
Q Consensus       635 ~s~d~~~l~sgs~---------Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~-~laS~s-~D~~IrvW~~~~~~~  703 (763)
                      |++|+++|+.+..         +..+.|+|+++++.++.+.... ...+++|+|+++ ++++.. .+++|.|+|+.+.+.
T Consensus       271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence            8999988876532         2356699999999999887654 589999999996 678887 699999999999999


Q ss_pred             ccccCCCCCCC
Q 004290          704 SIVSGGAAGPD  714 (763)
Q Consensus       704 ~~~~~g~~~~~  714 (763)
                      +....-+.+|.
T Consensus       350 v~~I~vg~~P~  360 (368)
T 1mda_H          350 QSSVELDKGPE  360 (368)
T ss_dssp             EEECCCCSCCC
T ss_pred             EEEEECCCCCC
Confidence            88876555553

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.78  E-value=2.3e-09  Score=113.20  Aligned_cols=185  Identities=11%  Similarity=0.081  Sum_probs=103.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (763)
Q Consensus        61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (763)
                      ++.+|++++.|+.|+.||..+|+.+..+. .  ..+.+..+.++  +..+++++.|+.|+.||..+++.          +
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~-~--~~~~s~p~~~~--g~~~v~~s~dg~l~a~d~~tG~~----------~   72 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK-E--DPVLQVPTHVE--EPAFLPDPNDGSLYTLGSKNNEG----------L   72 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEE-C--CCSCCCC-------CCEEECTTTCCEEEC-----CC----------S
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEec-C--CCceecceEcC--CCEEEEeCCCCEEEEEECCCCce----------e
Confidence            57889999999999999999999998883 3  45555556666  56788888999999999986432          2


Q ss_pred             eeeecccC-cee-EEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccce
Q 004290          141 ALYQCHTR-RVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL  218 (763)
Q Consensus       141 ~~~~~h~~-~v~-~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  218 (763)
                      ..+..+.. .+. ...+.  .+..+++++.|+.|+.||.++++..              |.....           .   
T Consensus        73 w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~--------------w~~~~~-----------~---  122 (369)
T 2hz6_A           73 TKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQ--------------QTLSSA-----------F---  122 (369)
T ss_dssp             EECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------------------
T ss_pred             eeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEE--------------EEecCC-----------C---
Confidence            22221111 110 00111  2246677888999999999988732              211110           0   


Q ss_pred             EEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC---CEEE
Q 004290          219 KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG---EEVL  295 (763)
Q Consensus       219 ~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg---~~l~  295 (763)
                       ...++|. +..+++++.|+.|+.||.++++.+..+...                       .....++.++.   ..++
T Consensus       123 -~~~~~p~-~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-----------------------~~~~~~~~~~~~~~~~v~  177 (369)
T 2hz6_A          123 -ADSLSPS-TSLLYLGRTEYTITMYDTKTRELRWNATYF-----------------------DYAASLPEDDVDYKMSHF  177 (369)
T ss_dssp             ------------EEEEEEEEEEECCCSSSSSCCCEEEEE-----------------------EECCBCCCCCTTCCCCEE
T ss_pred             -ccccccc-CCEEEEEecCCEEEEEECCCCCEEEeEecc-----------------------cccCccccCCccccceEE
Confidence             1234554 568889999999999999998765433100                       01112233322   4577


Q ss_pred             EEeCCCeEEEEECCCCCccc
Q 004290          296 LSYSGEHVYLMDVNHAGGRA  315 (763)
Q Consensus       296 ~~s~d~~i~iwd~~~~~~~~  315 (763)
                      +++.|+.|+.||..+++...
T Consensus       178 ~~~~dg~v~a~d~~tG~~~W  197 (369)
T 2hz6_A          178 VSNGDGLVVTVDSESGDVLW  197 (369)
T ss_dssp             EEETSCEEEEECTTTCCEEE
T ss_pred             EECCCCEEEEEECCCCcEEE
Confidence            88899999999999976433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.77  E-value=1.1e-06  Score=100.40  Aligned_cols=53  Identities=23%  Similarity=0.221  Sum_probs=42.7

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcc-eEEEEeeCCCC-eEEEE
Q 004290          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV-VNCVQCHPFDC-VVATS  687 (763)
Q Consensus       635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~-V~~v~~sp~~~-~laS~  687 (763)
                      ++..+.+|+.|+.||.++.||.+||+++-.++.+.+. .+-+.|..+++ |++..
T Consensus       482 ~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          482 LSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             ceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence            5668889999999999999999999999999865443 35677888886 55544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.77  E-value=4.6e-07  Score=104.25  Aligned_cols=68  Identities=9%  Similarity=-0.005  Sum_probs=49.2

Q ss_pred             ccCCCCEEEEecCCC---cEEEEEcCcCcEEEEEe-cCCcceEEEEeeCCCCeEEEEeCC----CcEEEEcCCCCCC
Q 004290          635 LGQRGDYIASGSDDG---RWFIWEKQTGRLIKMLL-GDEAVVNCVQCHPFDCVVATSGID----NTIKIWTPSASVP  703 (763)
Q Consensus       635 ~s~d~~~l~sgs~Dg---~i~iWd~~tg~~~~~l~-gH~~~V~~v~~sp~~~~laS~s~D----~~IrvW~~~~~~~  703 (763)
                      |++++++|+....++   .|++||++.+ ..+.+. .+.+.|..+.++|++..|+-...+    ++|..||+.+++.
T Consensus       333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          333 VHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            788888887776544   7999999854 455554 355678889999988755544444    7899999877653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.71  E-value=6e-07  Score=91.95  Aligned_cols=230  Identities=10%  Similarity=0.033  Sum_probs=139.4

Q ss_pred             ccceeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           41 SQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      ..+..+..+........|+|+|+ +++++..++.|..|+. +++ ...+ ..+...+.+++++++  ++++++...++.|
T Consensus        35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~-~~~~~~~~gl~~d~d--G~l~v~~~~~~~v  109 (305)
T 3dr2_A           35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVL-LDATAFTNGNAVDAQ--QRLVHCEHGRRAI  109 (305)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEE-EESCSCEEEEEECTT--SCEEEEETTTTEE
T ss_pred             CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEE-eCCCCccceeeECCC--CCEEEEECCCCEE
Confidence            34455555667788999999998 6778888899999998 444 2334 345567899999998  6777666666889


Q ss_pred             EEEECCCCCCCCCCCCCCCCce-eeec-ccCceeEEEEecCCCCEEEE----EeC-------------CCcEEEEECCCC
Q 004290          120 RLFNLSRFSGRGLDDNAITPSA-LYQC-HTRRVKKLAVEVGNPHVVWS----ASE-------------DGTLRQHDFRQG  180 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~-~~~~-h~~~v~~l~~sp~~~~~l~s----~s~-------------dg~i~iwd~~~~  180 (763)
                      .+|+.. +..        ..+. ...+ ....++.+++.| ++.+++|    |..             .+.|..||..++
T Consensus       110 ~~~~~~-g~~--------~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g  179 (305)
T 3dr2_A          110 TRSDAD-GQA--------HLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS  179 (305)
T ss_dssp             EEECTT-SCE--------EEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC
T ss_pred             EEECCC-CCE--------EEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC
Confidence            999875 221        0011 1111 123577899999 5567765    322             245666666544


Q ss_pred             CCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC------CcEEEEeCCCCCCCccc
Q 004290          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------AFARLYDRRMLPPLTSC  254 (763)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D------g~i~iwd~~~~~~~~~~  254 (763)
                      +..                       .+.    .....+.++|+|+ ++.|+++...      +.|++||+.... +.. 
T Consensus       180 ~~~-----------------------~~~----~~~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~-  229 (305)
T 3dr2_A          180 PLQ-----------------------RMA----DLDHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGA-LHD-  229 (305)
T ss_dssp             CCE-----------------------EEE----EESSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTE-EEE-
T ss_pred             cEE-----------------------EEe----cCCCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCC-ccC-
Confidence            311                       010    1224578999998 5667766655      789999987532 110 


Q ss_pred             CCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCC
Q 004290          255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN  334 (763)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~  334 (763)
                               ...+...      . ......++++++|+ |.++..+ .|.+|+... +. ...+.....+..++|.|+.+
T Consensus       230 ---------~~~~~~~------~-~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~g-~~-~~~~~~~~~~~~~~f~~d~~  289 (305)
T 3dr2_A          230 ---------RRHFASV------P-DGLPDGFCVDRGGW-LWSSSGT-GVCVFDSDG-QL-LGHIPTPGTASNCTFDQAQQ  289 (305)
T ss_dssp             ---------EEEEECC------S-SSCCCSEEECTTSC-EEECCSS-EEEEECTTS-CE-EEEEECSSCCCEEEECTTSC
T ss_pred             ---------CeEEEEC------C-CCCCCeEEECCCCC-EEEecCC-cEEEECCCC-CE-EEEEECCCceeEEEEeCCCC
Confidence                     0000000      0 11245688999999 4555544 599999843 32 23333333466777876544


Q ss_pred             C
Q 004290          335 G  335 (763)
Q Consensus       335 ~  335 (763)
                      .
T Consensus       290 ~  290 (305)
T 3dr2_A          290 R  290 (305)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.68  E-value=2.8e-06  Score=87.88  Aligned_cols=193  Identities=11%  Similarity=0.117  Sum_probs=117.8

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccC--C-CCceEEEEEeeCCCCcEEEEEeCC----CcEEEE
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--H-SANVFCTKFVPETSDELVVSGAGD----AEVRLF  122 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~--h-~~~V~~v~~~p~~~~~~l~s~s~d----g~I~iw  122 (763)
                      ...|.+++|+|+|+++++. .+ .|.+||..+++........  . ...+.+++++|+  |+++++...+    +...||
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~v~~~~~~~~~~~~~l~  164 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIY  164 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC--CCEEEEeCCCcCCCCceEEE
Confidence            4579999999999987765 44 4999999888754332111  1 246889999998  6776655421    223444


Q ss_pred             ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECC--CC-CCCCCCCCCCcccceEEEe
Q 004290          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QG-SSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~  199 (763)
                      .+..  +.         ...+..+......++|+|++..++++.+.++.|.+||+.  ++ +..         ....+..
T Consensus       165 ~~~~--g~---------~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------~~~~~~~  224 (326)
T 2ghs_A          165 HVAK--GK---------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---------KAEVFID  224 (326)
T ss_dssp             EEET--TE---------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---------CCEEEEE
T ss_pred             EEeC--Cc---------EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---------CceEEEE
Confidence            4332  11         222323344678899999554455555667899999986  33 210         0111111


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                      +           ......+..++++++ ++++++...++.|.+||. +++.+..+.                    ... 
T Consensus       225 ~-----------~~~~~~p~gi~~d~~-G~lwva~~~~~~v~~~d~-~g~~~~~i~--------------------~~~-  270 (326)
T 2ghs_A          225 S-----------TGIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDT-DGNHIARYE--------------------VPG-  270 (326)
T ss_dssp             C-----------TTSSSEEEEEEECTT-SCEEEEEETTTEEEEECT-TCCEEEEEE--------------------CSC-
T ss_pred             C-----------CCCCCCCCeeEECCC-CCEEEEEeCCCEEEEECC-CCCEEEEEE--------------------CCC-
Confidence            1           112234578999997 577776666788999998 443222110                    011 


Q ss_pred             cceeEEEEc-CCCCEEEEEeCC
Q 004290          280 LHLTHVTFS-PNGEEVLLSYSG  300 (763)
Q Consensus       280 ~~i~~v~~s-pdg~~l~~~s~d  300 (763)
                      ..+++++|+ |+++.|++++..
T Consensus       271 ~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          271 KQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             SBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCcEEEEEecCCCCEEEEEecC
Confidence            148999998 898877666543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.59  E-value=4.5e-06  Score=95.19  Aligned_cols=65  Identities=17%  Similarity=0.142  Sum_probs=49.4

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecC-CcceEEEEeeCCCC-eEEEEeC----------------CCcEEEE
Q 004290          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGD-EAVVNCVQCHPFDC-VVATSGI----------------DNTIKIW  696 (763)
Q Consensus       635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH-~~~V~~v~~sp~~~-~laS~s~----------------D~~IrvW  696 (763)
                      +..++.+|+.|+.||.+++||..||+++..+.-. ....+-+.|.++++ +++..+.                .+.+.++
T Consensus       484 ~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f  563 (677)
T 1kb0_A          484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTF  563 (677)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEE
T ss_pred             eEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEE
Confidence            5668889999999999999999999999999744 44455677788886 4444222                3677888


Q ss_pred             cCC
Q 004290          697 TPS  699 (763)
Q Consensus       697 ~~~  699 (763)
                      .+.
T Consensus       564 ~l~  566 (677)
T 1kb0_A          564 VVG  566 (677)
T ss_dssp             EET
T ss_pred             ecc
Confidence            776

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.57  E-value=4e-06  Score=95.65  Aligned_cols=60  Identities=12%  Similarity=0.049  Sum_probs=50.5

Q ss_pred             CCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccC
Q 004290          648 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG  708 (763)
Q Consensus       648 Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~  708 (763)
                      .|.|..||+.||+.+-.+.. ...+++..+++.+.+++.++.|+.|++||..+++.+..+.
T Consensus       456 ~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          456 FGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             EEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence            48899999999999888764 3456666777888888889999999999999999887664

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.57  E-value=7.4e-06  Score=80.55  Aligned_cols=226  Identities=7%  Similarity=-0.026  Sum_probs=137.0

Q ss_pred             ccccceeeccccC--ceEEEEeCCCCCEEEEEeC--CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004290           39 RLSQERELEGHQG--CVNAISWNSKGSLLISGSD--DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (763)
Q Consensus        39 ~~~~~~~l~gH~~--~V~~l~fsp~g~~Lasgs~--D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s  114 (763)
                      +.+.+.++. |..  ....|+|++++.+.++.+.  ++.|.+.|+.+++.+..+..+.......+++..   +.+.++.-
T Consensus         8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g---~~lyv~t~   83 (266)
T 2iwa_A            8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN---EKLYQVVW   83 (266)
T ss_dssp             EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET---TEEEEEET
T ss_pred             CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC---CEEEEEEe
Confidence            355666664 543  3689999998766666553  579999999999999887433222333455552   35666666


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      .++.|.++|..+.          +.+..+..-..  ....+++++..++++ ..++.|.++|..+.+..           
T Consensus        84 ~~~~v~viD~~t~----------~v~~~i~~g~~--~g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~-----------  139 (266)
T 2iwa_A           84 LKNIGFIYDRRTL----------SNIKNFTHQMK--DGWGLATDGKILYGS-DGTSILYEIDPHTFKLI-----------  139 (266)
T ss_dssp             TCSEEEEEETTTT----------EEEEEEECCSS--SCCEEEECSSSEEEE-CSSSEEEEECTTTCCEE-----------
T ss_pred             cCCEEEEEECCCC----------cEEEEEECCCC--CeEEEEECCCEEEEE-CCCCeEEEEECCCCcEE-----------
Confidence            7899999999863          23444432112  223455655556655 46889999999886522           


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (763)
                      ..+ .        +.........++.+.|. + +.+++....++.|.+.|..+++.+..+....        ..+.....
T Consensus       140 ~~I-~--------Vg~~~~p~~~~nele~~-d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g--------~~~~~~~~  200 (266)
T 2iwa_A          140 KKH-N--------VKYNGHRVIRLNELEYI-N-GEVWANIWQTDCIARISAKDGTLLGWILLPN--------LRKKLIDE  200 (266)
T ss_dssp             EEE-E--------CEETTEECCCEEEEEEE-T-TEEEEEETTSSEEEEEETTTCCEEEEEECHH--------HHHHHHHT
T ss_pred             EEE-E--------ECCCCcccccceeEEEE-C-CEEEEecCCCCeEEEEECCCCcEEEEEECCC--------cccccccc
Confidence            000 0        00000011235677787 4 5566665568899999999988655443110        00000000


Q ss_pred             CCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCC
Q 004290          275 HGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHA  311 (763)
Q Consensus       275 ~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~~  311 (763)
                      ........+.|+|+|+++.|++++ ..+.|+..++...
T Consensus       201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            001112478999999987776666 4889999988763

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.54  E-value=6.9e-06  Score=93.88  Aligned_cols=61  Identities=8%  Similarity=0.041  Sum_probs=51.4

Q ss_pred             CCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccCC
Q 004290          648 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGG  709 (763)
Q Consensus       648 Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~g  709 (763)
                      +|.|+.||+.||+.+-.+..+.. +..-.++..+.+++.++.|+.|++||.++++.+..+.-
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence            58999999999999988877654 34446777888999999999999999999999876653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.51  E-value=1.7e-07  Score=98.80  Aligned_cols=143  Identities=12%  Similarity=0.071  Sum_probs=73.3

Q ss_pred             CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (763)
Q Consensus       107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  186 (763)
                      +..+++++.|+.|+.||..+++          .+..+..  +.+.+..+.. ++.++++++.||.|+.||..+++..   
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~----------~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~---   72 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGS----------IKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGL---   72 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCC----------EEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCS---
T ss_pred             CCEEEEEcCCCEEEEEECCCCC----------EEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCcee---
Confidence            5789999999999999998743          2445543  4555554555 4457777789999999999887632   


Q ss_pred             CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004290          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (763)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (763)
                                 |.........+.     ..+    .+. . +..+++++.|+.|+.||..+++.+..+..          
T Consensus        73 -----------w~~~~~~~~~~~-----~sp----~~~-~-~~~v~~g~~dg~v~a~D~~tG~~~w~~~~----------  120 (369)
T 2hz6_A           73 -----------TKLPFTIPELVQ-----ASP----CRS-S-DGILYMGKKQDIWYVIDLLTGEKQQTLSS----------  120 (369)
T ss_dssp             -----------EECSCCHHHHHT-----TCS----CC-------CCCCEEEEEEEEECCC--------------------
T ss_pred             -----------eeeeccCccccc-----cCc----eEe-c-CCEEEEEeCCCEEEEEECCCCcEEEEecC----------
Confidence                       110000000000     000    111 1 34778888999999999999876543311          


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                                +.     .+.++|++..|++++.|+.|+.||..+++
T Consensus       121 ----------~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A          121 ----------AF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             ---------------------------EEEEEEEEEEECCCSSSSS
T ss_pred             ----------CC-----cccccccCCEEEEEecCCEEEEEECCCCC
Confidence                      10     13456788889999999999999998854

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.50  E-value=3.8e-06  Score=87.53  Aligned_cols=221  Identities=10%  Similarity=0.026  Sum_probs=132.5

Q ss_pred             cccCceEEEEeCCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEEccC-----CCCceEEEEEeeCCCCcEEEEEe---
Q 004290           48 GHQGCVNAISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETG-----HSANVFCTKFVPETSDELVVSGA---  114 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~-----D~~v~iWd~~~~~~~~~~~~~-----h~~~V~~v~~~p~~~~~~l~s~s---  114 (763)
                      +|...+..++|+++|+++++-..     ++.|.+||+.+++.+..+...     +...+..+++.|+. +..+++..   
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~-g~~yvtd~~~~  142 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH-NFVYISDPAPD  142 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT-TEEEEEECCSG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC-CEEEEEcCccC
Confidence            46678999999999987776544     578999999999877766321     22456899999863 55566665   


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCcee-EEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  193 (763)
                      .++.|.+||+.++.          ....+.+|..... ...+.+ ++..+.+.+.++.++.|.                 
T Consensus       143 ~~~~i~v~d~~~g~----------~~r~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~-----------------  194 (343)
T 2qe8_A          143 DKAALIRVDLQTGL----------AARVLQGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH-----------------  194 (343)
T ss_dssp             GGCEEEEEETTTCC----------EEEECTTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC-----------------
T ss_pred             CCCeEEEEECCCCC----------EEEEecCCCcccccccceeE-CCEEEEeccCCCceecee-----------------
Confidence            68899999998632          1233333321110 133444 445666677777776553                 


Q ss_pred             ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC-cEEEEeCCCCCCCcccCCCCCCCCcccccccccc
Q 004290          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (763)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (763)
                                            ..++.++|+|+ ++.|+++..++ .+..++....... .+       .....+.  .+
T Consensus       195 ----------------------~~~~gia~s~d-g~~ly~~~~~~~~l~~~~~~~~~~~-~~-------~~~~~~~--~~  241 (343)
T 2qe8_A          195 ----------------------LGVNGIVLDAE-NEWLYLSPMHSTSMYRIKSADLSNL-QL-------TDAELGS--KI  241 (343)
T ss_dssp             ----------------------CCEEEEEECTT-SCEEEEEESSCSEEEEEEHHHHTCT-TC-------CHHHHHT--TC
T ss_pred             ----------------------cccceeEeccC-CCEEEEEeCCCCeEEEEEHHHhcCC-CC-------Chhhhhc--ce
Confidence                                  12578999997 67777777665 4444443211000 00       0000000  00


Q ss_pred             cCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeec--CCCCeeeeeccC
Q 004290          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV--GDASKIMSFTPT  332 (763)
Q Consensus       273 ~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~p~  332 (763)
                      ...++.. ....++++++|.++++...++.|.+||..++.. ......  ...+..++|.|+
T Consensus       242 ~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~~p~~va~~~~  301 (343)
T 2qe8_A          242 ERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLSWTDSFNFGSD  301 (343)
T ss_dssp             EEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGSCEEEEEECTT
T ss_pred             EecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEEECCceecCCeeEECCC
Confidence            0001111 356799999999888888899999999855432 222211  233556777765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.45  E-value=0.00014  Score=76.53  Aligned_cols=106  Identities=13%  Similarity=0.115  Sum_probs=68.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCC--------CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004290           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGH--------SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  132 (763)
Q Consensus        61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h--------~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~  132 (763)
                      .+..|+.++.++.|..+|..+|+.+..+....        ...+.+.- ...  +..++.++.++.|..+|..+++    
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~v~v~~~~g~l~a~d~~tG~----  124 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVS--GGHVYIGSEKAQVYALNTSDGT----  124 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEE--TTEEEEEETTSEEEEEETTTCC----
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEe--CCEEEEEcCCCEEEEEECCCCC----
Confidence            46678888889999999999999887663221        12232222 223  4678888899999999998743    


Q ss_pred             CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       133 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                            .+................  + ..++.++.++.|..+|.++++.
T Consensus       125 ------~~W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~  165 (376)
T 3q7m_A          125 ------VAWQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAV  165 (376)
T ss_dssp             ------EEEEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCE
T ss_pred             ------EEEEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcE
Confidence                  133333222212222232  2 3666788899999999988763

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.42  E-value=5.9e-05  Score=75.22  Aligned_cols=219  Identities=7%  Similarity=0.013  Sum_probs=132.6

Q ss_pred             CceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        51 ~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      ..+..++|++++. ++++-..++.|..+++.++.....+ .........+++.|+. +.++++-...+.|.++++.... 
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-~~~~~~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~-  112 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQ-  112 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-ECCCCCccEEEEEecC-CeEEEEECCCCEEEEEEcCCCC-
Confidence            4578999999655 4455556789999999866543333 2333567999999973 5566666667899999987421 


Q ss_pred             CCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290          130 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (763)
Q Consensus       130 ~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (763)
                                ...+ .........++++|+++.++++...  .+.|..+++.....            ..+..       
T Consensus       113 ----------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~------------~~~~~-------  163 (267)
T 1npe_A          113 ----------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR------------RILAQ-------  163 (267)
T ss_dssp             ----------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC------------EEEEC-------
T ss_pred             ----------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc------------EEEEE-------
Confidence                      1122 1122467899999966566655543  46788888754321            11110       


Q ss_pred             eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004290          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (763)
Q Consensus       207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~  286 (763)
                            ........++++|+++.++++-...+.|.++|+......              .+..      +..  ....++
T Consensus       164 ------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--------------~~~~------~~~--~P~gi~  215 (267)
T 1npe_A          164 ------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR--------------KVLE------GLQ--YPFAVT  215 (267)
T ss_dssp             ------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE--------------EEEE------CCC--SEEEEE
T ss_pred             ------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE--------------EEec------CCC--CceEEE
Confidence                  012346889999975555566666789999998743211              0100      011  134566


Q ss_pred             EcCCCCEEEEEe-CCCeEEEEECCCCCccceEeecCC--CCeeeeeccC
Q 004290          287 FSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTVGD--ASKIMSFTPT  332 (763)
Q Consensus       287 ~spdg~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~p~  332 (763)
                      ..  +..|+.+. ..+.|..+|..+++..... ..+.  .+..+++.|+
T Consensus       216 ~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i-~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          216 SY--GKNLYYTDWKTNSVIAMDLAISKEMDTF-HPHKQTRLYGITIALS  261 (267)
T ss_dssp             EE--TTEEEEEETTTTEEEEEETTTTEEEEEE-CCSSCCCCCCEEEECS
T ss_pred             Ee--CCEEEEEECCCCeEEEEeCCCCCceEEE-ccccccccceeeecCc
Confidence            54  45555555 5789999999886533332 2222  3555666664

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.41  E-value=0.00018  Score=71.60  Aligned_cols=190  Identities=7%  Similarity=0.041  Sum_probs=113.3

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEE----EEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCC
Q 004290           63 SLLISGSDDTHINVWSYSSRKLL----HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAIT  138 (763)
Q Consensus        63 ~~Lasgs~D~~v~iWd~~~~~~~----~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~  138 (763)
                      .+|..+.. +.|+.+++......    ..+.......+.+++|+|+. +.++++-..++.|..+++....          
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~-~~ly~~d~~~~~I~~~~~~g~~----------   69 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVD-KVVYWTDISEPSIGRASLHGGE----------   69 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTT-TEEEEEETTTTEEEEEESSSCC----------
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCC-CEEEEEECCCCEEEEEecCCCC----------
Confidence            44555443 47888888754321    11111122457899999973 5566666667899999987421          


Q ss_pred             CceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccce
Q 004290          139 PSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL  218 (763)
Q Consensus       139 ~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  218 (763)
                      ..............|+++|.++.++++-...+.|.++++.....            ..+..             ......
T Consensus        70 ~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~------------~~~~~-------------~~~~~P  124 (267)
T 1npe_A           70 PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR------------RVLFD-------------TGLVNP  124 (267)
T ss_dssp             CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-------------SSCSSE
T ss_pred             cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE------------EEEEE-------------CCCCCc
Confidence            11122222346789999996666777777778999999864321            11110             011345


Q ss_pred             EEEEEeCCCCcEEEEEeC--CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEE
Q 004290          219 KSCDISSTRPHLLLVGGS--DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  296 (763)
Q Consensus       219 ~~i~~~p~~~~~l~sgs~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~  296 (763)
                      ..++++|+++.++++...  .+.|..+++.... ...+             ..     .+.  .....++++|++.+|+.
T Consensus       125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~-------------~~-----~~~--~~P~gia~d~~~~~lyv  183 (267)
T 1npe_A          125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRIL-------------AQ-----DNL--GLPNGLTFDAFSSQLCW  183 (267)
T ss_dssp             EEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEE-------------EC-----TTC--SCEEEEEEETTTTEEEE
T ss_pred             cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEE-------------EE-----CCC--CCCcEEEEcCCCCEEEE
Confidence            789999975544444433  4678888875321 1110             00     001  13788999998877766


Q ss_pred             EeC-CCeEEEEECCC
Q 004290          297 SYS-GEHVYLMDVNH  310 (763)
Q Consensus       297 ~s~-d~~i~iwd~~~  310 (763)
                      +.. .+.|..+++..
T Consensus       184 ~d~~~~~I~~~~~~g  198 (267)
T 1npe_A          184 VDAGTHRAECLNPAQ  198 (267)
T ss_dssp             EETTTTEEEEEETTE
T ss_pred             EECCCCEEEEEecCC
Confidence            654 67888888764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.37  E-value=1.7e-05  Score=76.89  Aligned_cols=211  Identities=10%  Similarity=0.024  Sum_probs=126.7

Q ss_pred             ccccceeeccccC--ceEEEEeCCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004290           39 RLSQERELEGHQG--CVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (763)
Q Consensus        39 ~~~~~~~l~gH~~--~V~~l~fsp~g~~Lasgs~D~--~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s  114 (763)
                      ..+.++++ .|..  ....|.|+ ++.++.+.+.+|  .|+++|+++++.+..+...  ...+.....+.. +.+.+..-
T Consensus        30 ~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~--~~~FgeGit~~g-~~ly~ltw  104 (262)
T 3nol_A           30 DYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG--KRYFGEGISDWK-DKIVGLTW  104 (262)
T ss_dssp             EEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC--TTCCEEEEEEET-TEEEEEES
T ss_pred             ceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC--CccceeEEEEeC-CEEEEEEe
Confidence            35666777 3543  35789998 677777888766  8999999999998887332  344443333442 35555555


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      .++.+.++|..+.          +.+..+.. ..  ....+.+++..+++| ..++.|.++|..+.+..           
T Consensus       105 ~~~~v~v~D~~t~----------~~~~ti~~-~~--eG~glt~dg~~L~~S-dGs~~i~~iDp~T~~v~-----------  159 (262)
T 3nol_A          105 KNGLGFVWNIRNL----------RQVRSFNY-DG--EGWGLTHNDQYLIMS-DGTPVLRFLDPESLTPV-----------  159 (262)
T ss_dssp             SSSEEEEEETTTC----------CEEEEEEC-SS--CCCCEEECSSCEEEC-CSSSEEEEECTTTCSEE-----------
T ss_pred             eCCEEEEEECccC----------cEEEEEEC-CC--CceEEecCCCEEEEE-CCCCeEEEEcCCCCeEE-----------
Confidence            6899999999873          33555542 22  223333545555555 44678999998887632           


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (763)
                      ..+ ....+        ......++.+.|. + +.+++..-.++.|.+.|..+++.+..+......+...        . 
T Consensus       160 ~~I-~V~~~--------g~~~~~lNELe~~-~-G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~--------~-  219 (262)
T 3nol_A          160 RTI-TVTAH--------GEELPELNELEWV-D-GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG--------P-  219 (262)
T ss_dssp             EEE-ECEET--------TEECCCEEEEEEE-T-TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC--------S-
T ss_pred             EEE-EeccC--------CccccccceeEEE-C-CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccc--------c-
Confidence            000 00000        0011234556776 3 5666665578899999999998765553221100000        0 


Q ss_pred             CCCCccceeEEEEcCCCCEEEEEeC
Q 004290          275 HGRSSLHLTHVTFSPNGEEVLLSYS  299 (763)
Q Consensus       275 ~g~~~~~i~~v~~spdg~~l~~~s~  299 (763)
                      ........+.|+|+|+++.|++.+.
T Consensus       220 ~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          220 LPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             CCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ccCcCCceEEEEEcCCCCEEEEECC
Confidence            0011124799999999888887775

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.31  E-value=4e-05  Score=80.25  Aligned_cols=216  Identities=13%  Similarity=0.111  Sum_probs=123.4

Q ss_pred             EeC--CCCCEEE-EEeCCCcEEEEeCCCC----eEEEEEc------cCCCCceEEEEEeeCCCCcEEEEEeCC------C
Q 004290           57 SWN--SKGSLLI-SGSDDTHINVWSYSSR----KLLHSIE------TGHSANVFCTKFVPETSDELVVSGAGD------A  117 (763)
Q Consensus        57 ~fs--p~g~~La-sgs~D~~v~iWd~~~~----~~~~~~~------~~h~~~V~~v~~~p~~~~~~l~s~s~d------g  117 (763)
                      .++  +++++|+ +|..+++|.|+|+.+.    +..+++.      .........+...|+  + +++++..+      +
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd--G-i~Vs~~g~~~g~~~g  164 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD--A-IYISALGNEEGEGPG  164 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS--C-EEEEEEEETTSCSCC
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC--e-EEEEcCCCcCCCCCC
Confidence            336  7787766 4567889999999755    5666661      001124566788898  6 77777666      7


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecc---cCceeEEEEecCCCCEEEEEe-------------------CCCcEEEE
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCH---TRRVKKLAVEVGNPHVVWSAS-------------------EDGTLRQH  175 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~sp~~~~~l~s~s-------------------~dg~i~iw  175 (763)
                      .|.+.|..+.          +.+..+..-   ...-+.+-|+| +.+.+++..                   ...+|.+|
T Consensus       165 ~v~vlD~~T~----------~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~  233 (462)
T 2ece_A          165 GILMLDHYSF----------EPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW  233 (462)
T ss_dssp             EEEEECTTTC----------CEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred             eEEEEECCCC----------eEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence            8999999873          234444311   12345688899 556777764                   36899999


Q ss_pred             ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEE--eCCCCcEEEEEe------CCCcEEEEeCCC
Q 004290          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI--SSTRPHLLLVGG------SDAFARLYDRRM  247 (763)
Q Consensus       176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~p~~~~~l~sgs------~Dg~i~iwd~~~  247 (763)
                      |+.+.+..            .-+++.          . .......+.|  +|+ ++++++++      .++.|.+|....
T Consensus       234 D~~~~k~~------------~tI~vg----------~-~g~~P~~i~f~~~Pd-g~~aYV~~e~~~~~Lss~V~v~~~d~  289 (462)
T 2ece_A          234 DLRKRKRI------------HSLTLG----------E-ENRMALELRPLHDPT-KLMGFINMVVSLKDLSSSIWLWFYED  289 (462)
T ss_dssp             ETTTTEEE------------EEEESC----------T-TEEEEEEEEECSSTT-CCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred             ECCCCcEe------------eEEecC----------C-CCCccceeEeeECCC-CCEEEEEEeeeccCCCceEEEEEecC
Confidence            99876421            011110          0 1122334545  997 56666655      567888776654


Q ss_pred             CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCC
Q 004290          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA  311 (763)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~  311 (763)
                      +. .........+...+....+.-....+........+.+||||++|+++.. .+.|.+||+...
T Consensus       290 g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          290 GK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             TE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred             Cc-eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            22 0000000000000000000000000000113788999999999998887 789999999743

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.24  E-value=0.00013  Score=70.16  Aligned_cols=211  Identities=13%  Similarity=0.127  Sum_probs=126.2

Q ss_pred             cccceeecccc--CceEEEEeCCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004290           40 LSQERELEGHQ--GCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (763)
Q Consensus        40 ~~~~~~l~gH~--~~V~~l~fsp~g~~Lasgs~D~--~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~  115 (763)
                      .+.+.++ .|.  .....|.|++ +.++.+.+.+|  .|+++|+.+++.+..+...  ...+.....+.. +++.+..-.
T Consensus         9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~--~~~fgeGi~~~~-~~ly~ltw~   83 (243)
T 3mbr_X            9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVP--PPYFGAGIVAWR-DRLIQLTWR   83 (243)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC--TTCCEEEEEEET-TEEEEEESS
T ss_pred             eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC--CCcceeEEEEeC-CEEEEEEee
Confidence            4566666 464  4467899986 66777777754  8999999999998887322  233333333332 466666667


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (763)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  195 (763)
                      ++.+.++|..+.          +.+..+.. ...-..++  +++..+++|- .++.|.++|..+.+..           .
T Consensus        84 ~~~v~v~D~~tl----------~~~~ti~~-~~~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~-----------~  138 (243)
T 3mbr_X           84 NHEGFVYDLATL----------TPRARFRY-PGEGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQV-----------G  138 (243)
T ss_dssp             SSEEEEEETTTT----------EEEEEEEC-SSCCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEE-----------E
T ss_pred             CCEEEEEECCcC----------cEEEEEeC-CCCceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEE-----------E
Confidence            899999999873          33555542 22234444  4455566554 5789999998887532           0


Q ss_pred             EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (763)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (763)
                      . +.        +.........++.+.+.  ++.+++..-.+..|.+.|.++++.+..+......+....      .  .
T Consensus       139 ~-I~--------V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~------~--~  199 (243)
T 3mbr_X          139 S-IK--------VTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA------L--T  199 (243)
T ss_dssp             E-EE--------CEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS------C--C
T ss_pred             E-EE--------EccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc------c--c
Confidence            0 00        00000011234566666  356666555688999999999986655532211000000      0  0


Q ss_pred             CCCccceeEEEEcCCCCEEEEEeC
Q 004290          276 GRSSLHLTHVTFSPNGEEVLLSYS  299 (763)
Q Consensus       276 g~~~~~i~~v~~spdg~~l~~~s~  299 (763)
                      .......+.|+++|+++.|++.+.
T Consensus       200 ~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          200 DSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             CTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCcCCceEEEEEcCCCCEEEEECC
Confidence            011224799999998887777765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.22  E-value=1.3e-05  Score=82.58  Aligned_cols=182  Identities=10%  Similarity=0.137  Sum_probs=102.9

Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  134 (763)
Q Consensus        55 ~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~  134 (763)
                      +..+..+|. |..++.++.|..|| .+++.+..+ ......+.++...++  + .|..++.+  |..+|.. +.      
T Consensus        24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~-~~~~~~~~~~~~~~~--g-~l~v~t~~--l~~~d~~-g~------   88 (330)
T 3hxj_A           24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFF-KSGEIIECRPSIGKD--G-TIYFGSDK--VYAINPD-GT------   88 (330)
T ss_dssp             CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESS-CGGGEEEECCEETTT--T-EECCSSCE--EEEECCC-GG------
T ss_pred             CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEE-ecCCCcccceEEecC--C-cEEEecCc--EEEECCC-Cc------
Confidence            444545565 55667788999999 888876654 333344566666655  4 45555544  8888853 11      


Q ss_pred             CCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCC
Q 004290          135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ  214 (763)
Q Consensus       135 ~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (763)
                          .+..+...........+.  + ..++.++.++.|..+|.. ++.              .+....           .
T Consensus        89 ----~~~~~~~~~~~~~~~~~~--~-~~l~v~t~~~~l~~~d~~-g~~--------------~~~~~~-----------~  135 (330)
T 3hxj_A           89 ----EKWRFDTKKAIVSDFTIF--E-DILYVTSMDGHLYAINTD-GTE--------------KWRFKT-----------K  135 (330)
T ss_dssp             ----GGGGSCC-----CCEEEE--T-TEEEEECTTSEEEEECTT-SCE--------------EEEEEC-----------S
T ss_pred             ----EEEEEECCCCcccCceEE--C-CEEEEEecCCEEEEEcCC-CCE--------------EEEEcC-----------C
Confidence                122222222222333333  3 456678888999999987 431              121111           1


Q ss_pred             ccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEE
Q 004290          215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV  294 (763)
Q Consensus       215 ~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l  294 (763)
                      ...+.++...++ + .+.+++.++.|..||.. ++.+..+..                    . ...+.++.+.+++.. 
T Consensus       136 ~~~~~~~~~~~~-g-~l~vgt~~~~l~~~d~~-g~~~~~~~~--------------------~-~~~~~~~~~d~~g~l-  190 (330)
T 3hxj_A          136 KAIYATPIVSED-G-TIYVGSNDNYLYAINPD-GTEKWRFKT--------------------N-DAITSAASIGKDGTI-  190 (330)
T ss_dssp             SCCCSCCEECTT-S-CEEEECTTSEEEEECTT-SCEEEEEEC--------------------S-SCCCSCCEECTTCCE-
T ss_pred             CceeeeeEEcCC-C-EEEEEcCCCEEEEECCC-CCEeEEEec--------------------C-CCceeeeEEcCCCEE-
Confidence            112344455654 3 47778888999999988 543322210                    0 113666777788874 


Q ss_pred             EEEeCCCeEEEEECCCCC
Q 004290          295 LLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       295 ~~~s~d~~i~iwd~~~~~  312 (763)
                      ..++  +.|+.|| .++.
T Consensus       191 ~v~t--~~l~~~d-~~g~  205 (330)
T 3hxj_A          191 YFGS--DKVYAIN-PDGT  205 (330)
T ss_dssp             EEES--SSEEEEC-TTSC
T ss_pred             EEEe--CEEEEEC-CCCc
Confidence            4455  8889998 5543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.20  E-value=5.4e-05  Score=79.26  Aligned_cols=248  Identities=11%  Similarity=0.043  Sum_probs=138.4

Q ss_pred             ccccCCCcccccccccchhh--hhccccceeec------cc-cCceEEEEeCCCCCEEEEEeCC------CcEEEEeCCC
Q 004290           17 TRHTDTRPDVNHSLQMHSSL--VRRLSQERELE------GH-QGCVNAISWNSKGSLLISGSDD------THINVWSYSS   81 (763)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~------gH-~~~V~~l~fsp~g~~Lasgs~D------~~v~iWd~~~   81 (763)
                      +|.+-..+-...+|.+.+..  -++.++.++++      .. ...-..+..+|+| +++++..+      +.|.+.|.++
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T  173 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS  173 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred             CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence            34443334445566666632  33446666663      11 1245567889999 77776655      7899999999


Q ss_pred             CeEEEEEccCCC--CceEEEEEeeCCCCcEEEEEe-------------------CCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290           82 RKLLHSIETGHS--ANVFCTKFVPETSDELVVSGA-------------------GDAEVRLFNLSRFSGRGLDDNAITPS  140 (763)
Q Consensus        82 ~~~~~~~~~~h~--~~V~~v~~~p~~~~~~l~s~s-------------------~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (763)
                      .+.+.++..+-.  .--..+.|+|+  ++.+++..                   ...+|.+||+.+.          +.+
T Consensus       174 ~~v~~~~~~~~~~~~~~Yd~~~~p~--~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~----------k~~  241 (462)
T 2ece_A          174 FEPLGKWEIDRGDQYLAYDFWWNLP--NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR----------KRI  241 (462)
T ss_dssp             CCEEEECCSBCTTCCCCCCEEEETT--TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT----------EEE
T ss_pred             CeEEEEEccCCCCccccceEEECCC--CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC----------cEe
Confidence            999998843322  22345888999  67888874                   3789999999863          223


Q ss_pred             eeeec--ccCceeEEEE--ecCCCCEEEEEe-----CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee-ccC
Q 004290          141 ALYQC--HTRRVKKLAV--EVGNPHVVWSAS-----EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS-LAD  210 (763)
Q Consensus       141 ~~~~~--h~~~v~~l~~--sp~~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  210 (763)
                      ..+.-  .......|.|  +|++...++++-     .+++|.+|....++.          .....+++....... +..
T Consensus       242 ~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~----------~~~~vIdi~~~~v~~~lp~  311 (462)
T 2ece_A          242 HSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW----------NAEKVIEIPAEPLEGNLPE  311 (462)
T ss_dssp             EEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE----------EEEEEEEECCEECCSSCCG
T ss_pred             eEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce----------eEEEEEeCCCccccccccc
Confidence            34432  1123455666  995544444444     677888877643220          111222222111000 000


Q ss_pred             CC----CCccceEEEEEeCCCCcEEEEEe-CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccc-cc--cC--CCC-Cc
Q 004290          211 PP----KQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM-HL--SE--HGR-SS  279 (763)
Q Consensus       211 ~~----~~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~--~g~-~~  279 (763)
                      .+    +.......|.++|+ +++|+++. ..+.|.+||+........          +...... .+  ..  .|. -.
T Consensus       312 ~~~~f~~~~~~pa~I~lS~D-GrfLYVSnrg~d~VavfdV~d~~~~~l----------v~~I~tGG~~~~~~~~~G~~~~  380 (462)
T 2ece_A          312 ILKPFKAVPPLVTDIDISLD-DKFLYLSLWGIGEVRQYDISNPFKPVL----------TGKVKLGGIFHRADHPAGHKLT  380 (462)
T ss_dssp             GGGGGTEECCCCCCEEECTT-SCEEEEEETTTTEEEEEECSSTTSCEE----------EEEEECBTTTTCBCCTTSCCCC
T ss_pred             cccccccCCCceeEEEECCC-CCEEEEEeCCCCEEEEEEecCCCCcEE----------EEEEEeCCeeccccccccccCC
Confidence            00    00134678999998 56666665 468999999863321110          0000000 00  00  000 00


Q ss_pred             cceeEEEEcCCCCEEEEEe
Q 004290          280 LHLTHVTFSPNGEEVLLSY  298 (763)
Q Consensus       280 ~~i~~v~~spdg~~l~~~s  298 (763)
                      ..-..++++|||++|+++.
T Consensus       381 ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          381 GAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCCCCEEECTTSSEEEEEC
T ss_pred             CCCCEEEEcCCCCEEEEEc
Confidence            0246689999999999988

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.19  E-value=4.1e-05  Score=74.27  Aligned_cols=210  Identities=7%  Similarity=-0.056  Sum_probs=125.2

Q ss_pred             cccceeecccc--CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290           40 LSQERELEGHQ--GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (763)
Q Consensus        40 ~~~~~~l~gH~--~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg  117 (763)
                      .+.+.++ .|.  .....|.|+ ++.++++.+.+|.|+++|+++++.+..+ ......-..+++..   +.+.+..-.++
T Consensus        43 ~~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g---~~Ly~ltw~~~  116 (268)
T 3nok_A           43 AHIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG---ERLYQLTWTEG  116 (268)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS---SCEEEEESSSC
T ss_pred             eEEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC---CEEEEEEccCC
Confidence            3566666 343  335789997 4677788889999999999999887776 33221123355543   46666666799


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  197 (763)
                      .+.+||..+.          +.+..+.. ...-..++  +++ ..|+.+..++.|.++|..+.+..           ..+
T Consensus       117 ~v~V~D~~Tl----------~~~~ti~~-~~eGwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~-----------~~I  171 (268)
T 3nok_A          117 LLFTWSGMPP----------QRERTTRY-SGEGWGLC--YWN-GKLVRSDGGTMLTFHEPDGFALV-----------GAV  171 (268)
T ss_dssp             EEEEEETTTT----------EEEEEEEC-SSCCCCEE--EET-TEEEEECSSSEEEEECTTTCCEE-----------EEE
T ss_pred             EEEEEECCcC----------cEEEEEeC-CCceeEEe--cCC-CEEEEECCCCEEEEEcCCCCeEE-----------EEE
Confidence            9999999873          33455542 22234455  434 44445556889999998887632           000


Q ss_pred             EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004290          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (763)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (763)
                       .        +.........++.+.|. + +.+++..-.+..|.+.|..+++.+..+....        +.+........
T Consensus       172 -~--------V~~~g~~v~~lNeLe~~-d-G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~--------L~~~~~~~~~~  232 (268)
T 3nok_A          172 -Q--------VKLRGQPVELINELECA-N-GVIYANIWHSSDVLEIDPATGTVVGVIDASA--------LTRAVAGQVTN  232 (268)
T ss_dssp             -E--------CEETTEECCCEEEEEEE-T-TEEEEEETTCSEEEEECTTTCBEEEEEECHH--------HHHHHTTTCCC
T ss_pred             -E--------eCCCCcccccccccEEe-C-CEEEEEECCCCeEEEEeCCCCcEEEEEECCC--------CcccccccccC
Confidence             0        00011112245667777 3 5666555578899999999998665543210        00000000001


Q ss_pred             CccceeEEEEcCCCCEEEEEeC
Q 004290          278 SSLHLTHVTFSPNGEEVLLSYS  299 (763)
Q Consensus       278 ~~~~i~~v~~spdg~~l~~~s~  299 (763)
                      .....+.|+|+|+++.|++.+.
T Consensus       233 ~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          233 PEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TTCCEEEEEECTTTCCEEEEET
T ss_pred             cCCceEEEEEcCCCCEEEEeCC
Confidence            1224799999998777776654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.12  E-value=0.0017  Score=63.38  Aligned_cols=226  Identities=12%  Similarity=0.152  Sum_probs=135.1

Q ss_pred             eeeccccCceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004290           44 RELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (763)
Q Consensus        44 ~~l~gH~~~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw  122 (763)
                      +.|.|-.+.+..|+|+|++..| ++...++.|...|.. ++.+..+..+-......|++.++  +.++++.-.++.+.++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~--g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGD--NQFVISDERDYAIYVI   96 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECST--TEEEEEETTTTEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCC--CEEEEEECCCCcEEEE
Confidence            4566766789999999976655 457778899999998 88887774333356888999887  6666766677889999


Q ss_pred             ECCCCCCCCCCCCCCCCceee------ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290          123 NLSRFSGRGLDDNAITPSALY------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (763)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  196 (763)
                      ++..... .      ..+...      .......-.|+|+|.+ +.|+++.+.....+|.+. +...       ......
T Consensus        97 ~v~~~~~-i------~~~~~~~~~~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~-g~~~-------~~~l~i  160 (255)
T 3qqz_A           97 SLTPNSE-V------KILKKIKIPLQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVN-GLLS-------SNELHI  160 (255)
T ss_dssp             EECTTCC-E------EEEEEEECCCSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEEE-STTC-------SSCCEE
T ss_pred             EcCCCCe-e------eeeeeeccccccccccCCcceEEEeCCC-CEEEEEECcCCceEEEEc-cccc-------CCceee
Confidence            8875321 0      001111      1234456899999955 444455554455555544 1100       000111


Q ss_pred             EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (763)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (763)
                      +.+..      + ........+.+++++|..+.+++.+.....+.++|... +.+..+.-           .+.... -.
T Consensus       161 ~~~~~------~-~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L-----------~~g~~~-l~  220 (255)
T 3qqz_A          161 SKDKA------L-QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSL-----------TKGSRG-LS  220 (255)
T ss_dssp             EECHH------H-HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEEC-----------STTGGG-CS
T ss_pred             ecchh------h-ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEc-----------CCccCC-cc
Confidence            11100      0 00011234689999998888888888889999999763 32222110           000000 00


Q ss_pred             CCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004290          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (763)
Q Consensus       277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~  309 (763)
                      +.-..-..|+|.++|+ |+..+.-+.++.|.-.
T Consensus       221 ~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          221 HNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             SCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred             cccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence            1111478899999998 5666777788887544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.05  E-value=0.0012  Score=67.22  Aligned_cols=243  Identities=9%  Similarity=0.001  Sum_probs=133.5

Q ss_pred             cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC--
Q 004290           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--  117 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg--  117 (763)
                      .+.+..|... .....++|+++|+++++-..++.|..||..+. ....+  .....+..+++.++  ++++++.....  
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~--~~~~~p~gia~~~d--G~l~vad~~~~~~   95 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA--TVEGKVSGLAFTSN--GDLVATGWNADSI   95 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE--ECSSEEEEEEECTT--SCEEEEEECTTSC
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE--eCCCCceeEEEcCC--CcEEEEeccCCcc
Confidence            4455555433 46789999999998888778899999998764 33333  22356889999998  67666654433  


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  197 (763)
                      .|..+|...+..        ..+..+ ........++..+ ++..+++-..++.|+++|...++.             .+
T Consensus        96 ~v~~~d~~~g~~--------~~~~~~-~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~-------------~v  152 (306)
T 2p4o_A           96 PVVSLVKSDGTV--------ETLLTL-PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSG-------------SI  152 (306)
T ss_dssp             EEEEEECTTSCE--------EEEEEC-TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEE-------------EE
T ss_pred             eEEEEcCCCCeE--------EEEEeC-CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcE-------------eE
Confidence            366666554221        111111 1122334555544 445555555688899998765320             00


Q ss_pred             EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC-CCCCcccCCCCCCCCcccccccccccCCC
Q 004290          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (763)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (763)
                      +.... ... ...........+.+  +|+++.++++-...+.|..||+.. +. +..          ...+..  .    
T Consensus       153 ~~~~~-~~~-~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~-~~~----------~~~~~~--~----  211 (306)
T 2p4o_A          153 WLEHP-MLA-RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK-PGE----------PEIFVE--Q----  211 (306)
T ss_dssp             EEECG-GGS-CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSC-BCC----------CEEEEE--S----
T ss_pred             EEECC-ccc-cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC-CCc----------cEEEec--c----
Confidence            00000 000 00000111234455  776444556666778999999874 21 100          011100  0    


Q ss_pred             CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccce-EeecC-CCCeeeeec---cCCCCc
Q 004290          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTVG-DASKIMSFT---PTLNGL  336 (763)
Q Consensus       277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~-~~~~~-~~~~~~~~~---p~~~~~  336 (763)
                         .....++++++|++.++....+.|.+|+.. +..... ....+ ..+..++|.   |+...+
T Consensus       212 ---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~L  272 (306)
T 2p4o_A          212 ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAI  272 (306)
T ss_dssp             ---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEE
T ss_pred             ---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEE
Confidence               025568999999876666678899999875 332111 11222 445667777   554444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.98  E-value=0.0007  Score=76.98  Aligned_cols=64  Identities=6%  Similarity=-0.013  Sum_probs=51.2

Q ss_pred             EecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccC
Q 004290          644 SGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG  708 (763)
Q Consensus       644 sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~  708 (763)
                      ....+|.|+.||..||+.+-....+. .+....+...+.+++.++.|+.|++||..+++.+..+.
T Consensus       433 ~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          433 AAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             GGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence            44567999999999999987776543 34445566678889999999999999999999887664

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.97  E-value=0.012  Score=68.66  Aligned_cols=205  Identities=10%  Similarity=0.065  Sum_probs=120.9

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004290           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  132 (763)
Q Consensus        53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~  132 (763)
                      |.++...++|.+++ |..++-|..||..+++............|.++...++  +.+.+ ++.++-|.+||..+..    
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~--g~lwi-gt~~~Gl~~~~~~~~~----  246 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSP--TRIWV-ATEGAGLFLINPKTKE----  246 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEET--TEEEE-EEBSSCEEEEETTTTE----
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCC--CCEEE-EECCCCeEEEeCCCCe----
Confidence            88888888887665 5655568999988776543211223467888888887  45544 4544458889987522    


Q ss_pred             CCCCCCCceeee--------cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          133 DDNAITPSALYQ--------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       133 ~~~~~~~~~~~~--------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                             ...+.        -....|.+|...+ ++. |+.|+.+ -|.+||..+.+..             .+..... 
T Consensus       247 -------~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~-------------~~~~~~~-  302 (795)
T 4a2l_A          247 -------IKNYLHSPSNPKSISSNYIRSLAMDS-QNR-LWIGTFN-DLNIYHEGTDSFA-------------SYSSNPV-  302 (795)
T ss_dssp             -------EEEECCCTTCTTSCSCSBEEEEEECT-TSC-EEEEESS-CEEEEETTTTEEE-------------EECCCTT-
T ss_pred             -------EEEeecCCCCccccCCCeEEEEEEcC-CCC-EEEEeCC-hhheEcCCCCeEE-------------EEecCCC-
Confidence                   11111        1235689998877 334 4445555 5889997665311             0000000 


Q ss_pred             eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (763)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  284 (763)
                          ....-....|.++..+++ + .|-+|+.++-|..|+..+.... .+             ..... ..+.....|.+
T Consensus       303 ----~~~~l~~~~i~~i~~D~~-g-~lWigt~~~Gl~~~~~~~~~~~-~~-------------~~~~~-~~~l~~~~V~~  361 (795)
T 4a2l_A          303 ----ENGSLSQRSVRSIFMDSQ-G-GMWLGTYFGGLNYYHPIRNRFK-NI-------------RNIPY-KNSLSDNVVSC  361 (795)
T ss_dssp             ----STTSCSSSCEEEEEECTT-S-CEEEEESSSCEEEECGGGGSSE-EE-------------CCCTT-SSSCSCSSEEE
T ss_pred             ----CCCCCCCCcEEEEEEeCC-c-CEEEEECCCCeEEeCCCcccce-EE-------------cCCCC-CCCCCCCeeEE
Confidence                000112356899999886 3 4667888888999987654211 00             00000 01112225999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          285 VTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       285 v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +...++|. |..|+.++-|..|+..++
T Consensus       362 i~~d~~g~-lWiGt~~~Gl~~~~~~~~  387 (795)
T 4a2l_A          362 IVEDKDKN-LWIGTNDGGLNLYNPITQ  387 (795)
T ss_dssp             EEECTTSC-EEEEESSSCEEEECTTTC
T ss_pred             EEECCCCC-EEEEECCCCeEEEcCCCC
Confidence            99999887 566777777888887663

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.97  E-value=0.0059  Score=63.18  Aligned_cols=223  Identities=8%  Similarity=0.027  Sum_probs=134.8

Q ss_pred             CceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        51 ~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      ..+..++|++.+. ++++-...+.|..+++..+.....+ .........+++.+.. +.++++-...+.|.+.++.... 
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~-  149 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAH-  149 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-eCCCCCccEEEEecCC-CeEEEEcCCCCeEEEEcCCCCc-
Confidence            3478899997554 5555567788999998876544333 2333456789999863 5666776777899999987421 


Q ss_pred             CCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (763)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (763)
                               ....+.........|++.|.++.++++-... +.|..+++......                       .+
T Consensus       150 ---------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-----------------------~~  197 (349)
T 3v64_C          150 ---------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-----------------------II  197 (349)
T ss_dssp             ---------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-----------------------ES
T ss_pred             ---------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-----------------------EE
Confidence                     0112223345678999999777777776666 78888887653211                       00


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc
Q 004290          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (763)
Q Consensus       209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s  288 (763)
                      .  .......+.++++|+++.++++-...+.|..+|+..... ..+             ....       ......+++ 
T Consensus       198 ~--~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~-------------~~~~-------~~~P~giav-  253 (349)
T 3v64_C          198 A--DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAV-------------ISQG-------LPHPFAITV-  253 (349)
T ss_dssp             C--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE-------------ECSS-------CSSEEEEEE-
T ss_pred             E--ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEE-------------EeCC-------CCCceEEEE-
Confidence            0  011235689999997665666666678899999864221 111             0000       013567777 


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCccceEeec-CCCCeeeeeccC
Q 004290          289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPT  332 (763)
Q Consensus       289 pdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~  332 (763)
                      ..+..+++-...+.|..++..+++........ ..+.....++|.
T Consensus       254 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~  298 (349)
T 3v64_C          254 FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQ  298 (349)
T ss_dssp             ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEECGG
T ss_pred             ECCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEEEccc
Confidence            34444455556889999987666544333322 233333444553

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.95  E-value=0.0012  Score=75.05  Aligned_cols=54  Identities=15%  Similarity=0.239  Sum_probs=39.5

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcce-EEEEeeCCCC-eEEEEe
Q 004290          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVV-NCVQCHPFDC-VVATSG  688 (763)
Q Consensus       635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V-~~v~~sp~~~-~laS~s  688 (763)
                      +...+.+|+.|+.|+.+++||.++|+++..++...+.. .-+.+..+++ +++.++
T Consensus       465 ~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          465 LSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             eEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            44578899999999999999999999999987764322 3344455665 555443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.91  E-value=0.0038  Score=65.65  Aligned_cols=223  Identities=9%  Similarity=0.054  Sum_probs=135.1

Q ss_pred             CceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           51 GCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        51 ~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      ..+..++|.+.+ .++++-...+.|..+++..+.....+ .........+++.+.. +.++++-...+.|.+.++.... 
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~-g~lY~~d~~~~~I~~~~~dg~~-  192 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAH-  192 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTT-TEEEEEETTTTEEEECBTTSCS-
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCC-CeEEEEcCCCCeEEEEeCCCCc-
Confidence            457889999754 45556567788999998876544444 3333456788999864 5666666667888888876321 


Q ss_pred             CCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (763)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (763)
                               ....+.........|++.|.++.++++-... +.|..+++.....            ..+..         
T Consensus       193 ---------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------------~~~~~---------  242 (386)
T 3v65_B          193 ---------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------------RIIAD---------  242 (386)
T ss_dssp             ---------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC---------
T ss_pred             ---------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc------------EEEEE---------
Confidence                     0112223345678999999777777776555 7888888765321            11110         


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc
Q 004290          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (763)
Q Consensus       209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s  288 (763)
                          ......+.|+|+|+++.++++-+..+.|..+|+..... ..+             ..     .+.  .....|++ 
T Consensus       243 ----~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~-------------~~-----~~~--~~P~giav-  296 (386)
T 3v65_B          243 ----THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAV-------------IS-----QGL--PHPFAITV-  296 (386)
T ss_dssp             ----SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEE-------------EC-----SSC--SSEEEEEE-
T ss_pred             ----CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEE-------------EE-----CCC--CCceEEEE-
Confidence                11234689999987665666666678899999864221 111             00     001  13567777 


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCccceEeec-CCCCeeeeeccC
Q 004290          289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPT  332 (763)
Q Consensus       289 pdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~  332 (763)
                      ..+..+++-...+.|..++..++......... ..+.....++|.
T Consensus       297 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~  341 (386)
T 3v65_B          297 FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQ  341 (386)
T ss_dssp             ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEESGG
T ss_pred             ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEEchh
Confidence            34444555556889999997666544443332 233334445554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.90  E-value=0.00012  Score=79.53  Aligned_cols=169  Identities=5%  Similarity=-0.036  Sum_probs=108.8

Q ss_pred             CceEEEEe-C-CCCCEEEEEe------------------CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEE
Q 004290           51 GCVNAISW-N-SKGSLLISGS------------------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV  110 (763)
Q Consensus        51 ~~V~~l~f-s-p~g~~Lasgs------------------~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l  110 (763)
                      .....+++ + |++++++.++                  .++.+.+.|.++.+.+.++..+-  ....++++|+  ++++
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spd--Gk~~  209 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYE--GKWA  209 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSS--SSEE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCC--CCEE
Confidence            45788998 5 9999998884                  34579999999999888884432  4577889999  7888


Q ss_pred             EEEeCCC--------------------------------------cEEEEECCCCCCCCCCCCCCCC-ceeeecccCcee
Q 004290          111 VSGAGDA--------------------------------------EVRLFNLSRFSGRGLDDNAITP-SALYQCHTRRVK  151 (763)
Q Consensus       111 ~s~s~dg--------------------------------------~I~iwd~~~~~~~~~~~~~~~~-~~~~~~h~~~v~  151 (763)
                      ++.+.+.                                      .|.+.|..+..+        .. +..+. -.....
T Consensus       210 ~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~--------~~~~~~Ip-vg~~Ph  280 (595)
T 1fwx_A          210 FSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS--------SLFTRYIP-IANNPH  280 (595)
T ss_dssp             EEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC--------CSSEEEEE-EESSCC
T ss_pred             EEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC--------ceeEEEEe-cCCCce
Confidence            8877553                                      245555543110        11 22332 234578


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEE
Q 004290          152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL  231 (763)
Q Consensus       152 ~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l  231 (763)
                      ++.++|++..+++++..+.+|.++|+.+.+.... ... ..........            .-......++|+|+ |..+
T Consensus       281 Gv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~-~~l-~~~~~v~~~v------------~vG~gP~h~aF~~d-G~aY  345 (595)
T 1fwx_A          281 GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY-ENA-DPRSAVVAEP------------ELGLGPLHTAFDGR-GNAY  345 (595)
T ss_dssp             CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH-SCC-CGGGGEEECC------------BCCSCEEEEEECTT-SEEE
T ss_pred             EEEEcCCCCEEEEeCCCCCeEEEEECcccccccc-ccc-CcccceEEEc------------CCCCCcceEEECCC-CeEE
Confidence            8999996655666666789999999986421000 000 0000011111            11234678999998 5666


Q ss_pred             EEEeCCCcEEEEeCCC
Q 004290          232 LVGGSDAFARLYDRRM  247 (763)
Q Consensus       232 ~sgs~Dg~i~iwd~~~  247 (763)
                      ++...|+.|.+||+..
T Consensus       346 ~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          346 TSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEETTTTEEEEEEHHH
T ss_pred             EEEecCCcEEEEEhhH
Confidence            7778899999999876

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.87  E-value=0.022  Score=66.28  Aligned_cols=208  Identities=12%  Similarity=0.099  Sum_probs=125.3

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccC-------CCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG-------HSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~-------h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw  122 (763)
                      ...|.++...++|.+++. +.++-|.+||..+++...-. ..       ....|.++...++  +.+.+ |+.+ -|.+|
T Consensus       214 ~~~i~~i~~d~~g~lwig-t~~~Gl~~~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~--g~lWi-gt~~-Gl~~~  287 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVA-TEGAGLFLINPKTKEIKNYL-HSPSNPKSISSNYIRSLAMDSQ--NRLWI-GTFN-DLNIY  287 (795)
T ss_dssp             CCCEEEEEEEETTEEEEE-EBSSCEEEEETTTTEEEEEC-CCTTCTTSCSCSBEEEEEECTT--SCEEE-EESS-CEEEE
T ss_pred             CCeeEEEEEcCCCCEEEE-ECCCCeEEEeCCCCeEEEee-cCCCCccccCCCeEEEEEEcCC--CCEEE-EeCC-hhheE
Confidence            456888888877876654 44445889998877654322 21       1356899988877  55544 4445 58889


Q ss_pred             ECCCCCCCCCCCCCCCCceeee--------cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290          123 NLSRFSGRGLDDNAITPSALYQ--------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (763)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  194 (763)
                      |.....           ...+.        -....|.+|...+++  .|..|+.++-|..|+.......           
T Consensus       288 ~~~~~~-----------~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~-----------  343 (795)
T 4a2l_A          288 HEGTDS-----------FASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFK-----------  343 (795)
T ss_dssp             ETTTTE-----------EEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSE-----------
T ss_pred             cCCCCe-----------EEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccce-----------
Confidence            877532           11111        123568999887733  4556778888999987654311           


Q ss_pred             eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004290          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (763)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (763)
                        .+.....      ...-....|.++...++ + .|-+|+.++-|..||..+++...              +.......
T Consensus       344 --~~~~~~~------~~~l~~~~V~~i~~d~~-g-~lWiGt~~~Gl~~~~~~~~~~~~--------------~~~~~~~~  399 (795)
T 4a2l_A          344 --NIRNIPY------KNSLSDNVVSCIVEDKD-K-NLWIGTNDGGLNLYNPITQRFTS--------------YTLQEDES  399 (795)
T ss_dssp             --EECCCTT------SSSCSCSSEEEEEECTT-S-CEEEEESSSCEEEECTTTCCEEE--------------ECCC----
T ss_pred             --EEcCCCC------CCCCCCCeeEEEEECCC-C-CEEEEECCCCeEEEcCCCCcEEE--------------EecCCCCc
Confidence              0000000      00012345889988886 4 46668888889999987653111              10000000


Q ss_pred             C-CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          275 H-GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       275 ~-g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      . +.....|.+++..++|+.|.+|+.++-|.+||..++
T Consensus       400 ~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          400 ARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             --CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred             ccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence            0 111225999999999985677787778999998774

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.85  E-value=0.01  Score=60.39  Aligned_cols=226  Identities=7%  Similarity=-0.037  Sum_probs=131.4

Q ss_pred             cCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCC---CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004290           50 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (763)
Q Consensus        50 ~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~---~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~  125 (763)
                      ...+.+++|++.+. ++++-..++.|..+++.+   +.....+.......+..+++.+.. +.++++-...+.|.+.++.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~-~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC-CeEEEEECCCCEEEEEeCC
Confidence            34578999998654 555666678999999876   122222212233456889998763 5666666778899999987


Q ss_pred             CCCCCCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290          126 RFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                      ...           ...+ .........+++.|.++.++++.... +.|...++.....            ..+..    
T Consensus       108 g~~-----------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~------------~~~~~----  160 (316)
T 1ijq_A          108 GVK-----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT----  160 (316)
T ss_dssp             SSS-----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEEC----
T ss_pred             CCc-----------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe------------EEEEE----
Confidence            421           2222 22345678999999776666665443 6788888754320            11110    


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  283 (763)
                               ......+.++++|+++.++++-...+.|..+|+... ....+.             ..    .+.. ....
T Consensus       161 ---------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~-------------~~----~~~~-~~P~  212 (316)
T 1ijq_A          161 ---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTIL-------------ED----EKRL-AHPF  212 (316)
T ss_dssp             ---------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE-------------EC----TTTT-SSEE
T ss_pred             ---------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEe-------------ec----CCcc-CCcE
Confidence                     112356899999976555556566789999998742 111110             00    0000 1256


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeec-CCCCeeeeeccC
Q 004290          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPT  332 (763)
Q Consensus       284 ~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~  332 (763)
                      .+++. .+..+++-...+.|..++..+++........ ..+.....++|.
T Consensus       213 giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~~~~p~~i~v~~~~  261 (316)
T 1ijq_A          213 SLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNL  261 (316)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGG
T ss_pred             EEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEecCCCCceEEEEeccc
Confidence            67774 3455555556889999998776543333222 233344445543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.84  E-value=0.0097  Score=61.55  Aligned_cols=201  Identities=8%  Similarity=0.025  Sum_probs=125.7

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      .+..+|.+..+++ +|+.+ ....|+..++........+ . ....+..++|++.. +.++++-...+.|..+++.... 
T Consensus        33 ~d~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~-~-~~~~~~~l~~d~~~-~~ly~~D~~~~~I~r~~~~g~~-  106 (349)
T 3v64_C           33 PDRRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSN-  106 (349)
T ss_dssp             TTSSCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEE-C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred             CCCCcccccccCc-eeEee-cccceEEEeCCCCeeEEee-c-CCCceEEEEEeccc-cEEEEEeccCCceEEEecCCCC-
Confidence            3445676766644 44433 3356888888766554444 3 33458899999874 5566665667889999987522 


Q ss_pred             CCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeecc
Q 004290          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (763)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (763)
                               ..............|++.+.++.++++-...+.|.+.++.....            ..+..          
T Consensus       107 ---------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------~~l~~----------  155 (349)
T 3v64_C          107 ---------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------KVLLW----------  155 (349)
T ss_dssp             ---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC----------
T ss_pred             ---------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce------------EEEEe----------
Confidence                     11122222345678999986777777877788999999865421            11110          


Q ss_pred             CCCCCccceEEEEEeCCCCcEEEEEeCC-CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc
Q 004290          210 DPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (763)
Q Consensus       210 ~~~~~~~~v~~i~~~p~~~~~l~sgs~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s  288 (763)
                         ........++++|.++.++++-... +.|..+++.... ...+             ..     .+  -...+.|+|+
T Consensus       156 ---~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~-------------~~-----~~--~~~PnGla~d  211 (349)
T 3v64_C          156 ---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRII-------------AD-----TH--LFWPNGLTID  211 (349)
T ss_dssp             ---TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEES-------------CC-----SS--CSCEEEEEEE
T ss_pred             ---CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEE-------------EE-----CC--CCCcceEEEe
Confidence               1123468999999766666665555 788888876422 1111             00     00  1137889999


Q ss_pred             CCCCEEEEEeC-CCeEEEEECCCC
Q 004290          289 PNGEEVLLSYS-GEHVYLMDVNHA  311 (763)
Q Consensus       289 pdg~~l~~~s~-d~~i~iwd~~~~  311 (763)
                      |++..|+.+.. .+.|..+++...
T Consensus       212 ~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          212 YAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCEEEEEECCCCEEEEEeCCCC
Confidence            97777776654 789999998763

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.70  E-value=0.054  Score=54.67  Aligned_cols=174  Identities=13%  Similarity=0.039  Sum_probs=94.0

Q ss_pred             CCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC
Q 004290           81 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP  160 (763)
Q Consensus        81 ~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  160 (763)
                      ..+.+..+. . ......++|.++  ++++++-..++.|..||....           ....+ .....+..|++.++ +
T Consensus        21 ~~~~~~~~p-~-~~~pegia~~~~--g~lyv~d~~~~~I~~~d~~g~-----------~~~~~-~~~~~p~gia~~~d-G   83 (306)
T 2p4o_A           21 PAKIITSFP-V-NTFLENLASAPD--GTIFVTNHEVGEIVSITPDGN-----------QQIHA-TVEGKVSGLAFTSN-G   83 (306)
T ss_dssp             CEEEEEEEC-T-TCCEEEEEECTT--SCEEEEETTTTEEEEECTTCC-----------EEEEE-ECSSEEEEEEECTT-S
T ss_pred             CceEeEeCC-C-CCCcceEEECCC--CCEEEEeCCCCeEEEECCCCc-----------eEEEE-eCCCCceeEEEcCC-C
Confidence            345556662 2 256789999998  677777778899999987641           11222 23456889999994 4


Q ss_pred             CEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004290          161 HVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (763)
Q Consensus       161 ~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg  238 (763)
                      +++++.....  .|..+|..+++.            ..+....           . ......++..+. +..+++-..++
T Consensus        84 ~l~vad~~~~~~~v~~~d~~~g~~------------~~~~~~~-----------~-~~~~~g~~~~~~-~~~~v~d~~~g  138 (306)
T 2p4o_A           84 DLVATGWNADSIPVVSLVKSDGTV------------ETLLTLP-----------D-AIFLNGITPLSD-TQYLTADSYRG  138 (306)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSCE------------EEEEECT-----------T-CSCEEEEEESSS-SEEEEEETTTT
T ss_pred             cEEEEeccCCcceEEEEcCCCCeE------------EEEEeCC-----------C-ccccCcccccCC-CcEEEEECCCC
Confidence            6665544322  466677665541            1111110           0 112234444443 44455444688


Q ss_pred             cEEEEeCCCCC-CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 004290          239 FARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  310 (763)
Q Consensus       239 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~  310 (763)
                      .|.++|...+. .+......      ....    ....+..  ..+.+  +|++++|+.+.. .+.|..|++..
T Consensus       139 ~i~~~d~~~~~~~v~~~~~~------~~~~----~~~~~~~--~pngi--s~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          139 AIWLIDVVQPSGSIWLEHPM------LARS----NSESVFP--AANGL--KRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             EEEEEETTTTEEEEEEECGG------GSCS----STTCCSC--SEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred             eEEEEeCCCCcEeEEEECCc------cccc----cccCCCC--cCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence            89999876531 01000000      0000    0000001  24555  788887766654 77888888764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.70  E-value=0.008  Score=66.74  Aligned_cols=54  Identities=7%  Similarity=-0.074  Sum_probs=37.8

Q ss_pred             CCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcc-eEEEEeeCCCC-eEEEEeCC
Q 004290          637 QRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV-VNCVQCHPFDC-VVATSGID  690 (763)
Q Consensus       637 ~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~-V~~v~~sp~~~-~laS~s~D  690 (763)
                      ..+..|+.|+.||.|+.||.+||+++-.++..... ..-+.+.++++ ++++.+.+
T Consensus       473 t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~G~  528 (571)
T 2ad6_A          473 TKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGV  528 (571)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred             ECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEECCC
Confidence            35677888999999999999999999988754322 22344667776 44444433

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.68  E-value=0.0009  Score=65.65  Aligned_cols=196  Identities=11%  Similarity=0.060  Sum_probs=113.9

Q ss_pred             CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCCCceeeec-ccCceeEEEEecC
Q 004290           82 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVG  158 (763)
Q Consensus        82 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~  158 (763)
                      .+.+.++..+.......+.|+|+  +.++++.+.  ++.|+++|+.+++          .+..+.- .......+++.  
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~d--g~Lyvstg~~~~s~v~~iD~~tg~----------v~~~i~l~~~~fgeGi~~~--   74 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAEN--DTLFESTGLYGRSSVRQVALQTGK----------VENIHKMDDSYFGEGLTLL--   74 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECST--TEEEEEECSTTTCEEEEEETTTCC----------EEEEEECCTTCCEEEEEEE--
T ss_pred             ceEEEEEECCCCCCcccEEEeCC--CeEEEECCCCCCCEEEEEECCCCC----------EEEEEecCCCcceEEEEEe--
Confidence            34566663222234689999997  566666554  6899999999743          2333321 11122345554  


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004290          159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (763)
Q Consensus       159 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg  238 (763)
                      ++.+.++.-.++.+.++|..+.+..              ..        +......     ...++++ ++.++++..++
T Consensus        75 g~~lyv~t~~~~~v~viD~~t~~v~--------------~~--------i~~g~~~-----g~glt~D-g~~l~vs~gs~  126 (266)
T 2iwa_A           75 NEKLYQVVWLKNIGFIYDRRTLSNI--------------KN--------FTHQMKD-----GWGLATD-GKILYGSDGTS  126 (266)
T ss_dssp             TTEEEEEETTCSEEEEEETTTTEEE--------------EE--------EECCSSS-----CCEEEEC-SSSEEEECSSS
T ss_pred             CCEEEEEEecCCEEEEEECCCCcEE--------------EE--------EECCCCC-----eEEEEEC-CCEEEEECCCC
Confidence            4456666667899999999876522              11        1100001     1224455 34555556788


Q ss_pred             cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEe
Q 004290          239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY  318 (763)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~  318 (763)
                      .|.++|..+.+.+..+....                .+..-..++.+.|. +|+..+....++.|.+.|..+++......
T Consensus       127 ~l~viD~~t~~v~~~I~Vg~----------------~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~  189 (266)
T 2iwa_A          127 ILYEIDPHTFKLIKKHNVKY----------------NGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL  189 (266)
T ss_dssp             EEEEECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred             eEEEEECCCCcEEEEEEECC----------------CCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence            99999999876554432110                01111126778888 77544444458899999999977544433


Q ss_pred             ecC-------------CCCeeeeeccCCCCc
Q 004290          319 TVG-------------DASKIMSFTPTLNGL  336 (763)
Q Consensus       319 ~~~-------------~~~~~~~~~p~~~~~  336 (763)
                      ..+             .....++|+|+.+.+
T Consensus       190 ~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l  220 (266)
T 2iwa_A          190 LPNLRKKLIDEGFRDIDVLNGIAWDQENKRI  220 (266)
T ss_dssp             CHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred             CCCcccccccccccccCceEEEEEcCCCCEE
Confidence            221             244678888875543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.66  E-value=0.0082  Score=63.10  Aligned_cols=198  Identities=8%  Similarity=0.032  Sum_probs=121.6

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004290           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  132 (763)
Q Consensus        53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~  132 (763)
                      -+|.+..+.+ +|+.+ ....|+..++........+ . ....+..++|.+.. +.++++-...+.|..+++....    
T Consensus        79 ~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~-~-~~~~~~gl~~d~~~-~~ly~~D~~~~~I~r~~~~g~~----  149 (386)
T 3v65_B           79 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSN----  149 (386)
T ss_dssp             SCEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEE-C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCC----
T ss_pred             CeECCccccc-eeEee-cCccceeeccCCCcEEEEe-c-CCCccEEEEEecCC-CeEEEEeCCCCcEEEEecCCCC----
Confidence            4455555533 44433 3357899998876554444 2 33468899999873 5566666677889999987521    


Q ss_pred             CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCC
Q 004290          133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  212 (763)
Q Consensus       133 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (763)
                            ....+.........|++.+.++.++++-...+.|.+.++.....            ..+..             
T Consensus       150 ------~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~------------~~l~~-------------  198 (386)
T 3v65_B          150 ------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------KVLLW-------------  198 (386)
T ss_dssp             ------EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC------------EEEEC-------------
T ss_pred             ------cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce------------EEeec-------------
Confidence                  01112222345678899886777777777778888888764321            11110             


Q ss_pred             CCccceEEEEEeCCCCcEEEEEeCC-CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC
Q 004290          213 KQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (763)
Q Consensus       213 ~~~~~v~~i~~~p~~~~~l~sgs~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg  291 (763)
                      ........++++|.++.++++-... +.|..+++..... ..+             ..     .+.  ...+.|+|+|++
T Consensus       199 ~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~-------------~~-----~~~--~~PnGlavd~~~  257 (386)
T 3v65_B          199 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RII-------------AD-----THL--FWPNGLTIDYAG  257 (386)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEE-------------EC-----SSC--SCEEEEEEEGGG
T ss_pred             CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEE-------------EE-----CCC--CCeeeEEEeCCC
Confidence            1123568999999766555555555 6788888764221 110             00     001  136889999877


Q ss_pred             CEEEEEeC-CCeEEEEECCCC
Q 004290          292 EEVLLSYS-GEHVYLMDVNHA  311 (763)
Q Consensus       292 ~~l~~~s~-d~~i~iwd~~~~  311 (763)
                      ..|+.+.. .+.|..+++...
T Consensus       258 ~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          258 RRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             TEEEEEETTTTEEEEECTTSC
T ss_pred             CEEEEEECCCCEEEEEeCCCC
Confidence            77766654 788999998753

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.62  E-value=0.032  Score=58.85  Aligned_cols=227  Identities=7%  Similarity=-0.017  Sum_probs=131.8

Q ss_pred             ccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCC----eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004290           49 HQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (763)
Q Consensus        49 H~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd  123 (763)
                      ....+..|+|++.+. +.++-...+.|..+++...    .....+ .........+++.+.. +.++++-...+.|.+.+
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~glavD~~~-~~lY~~d~~~~~I~~~~  187 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVAD  187 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-CSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEC
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-eCCCCCcccEEEEecC-CceEEEECCCCeEEEEe
Confidence            345688999998555 4455556788999998752    222233 3344567899999853 56667767788899998


Q ss_pred             CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (763)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (763)
                      +....          ....+.........|++.|.++.++++-.. .+.|...++.....            ..+..   
T Consensus       188 ~~g~~----------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------------~~~~~---  242 (400)
T 3p5b_L          188 TKGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT---  242 (400)
T ss_dssp             TTTCS----------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------------EEEEC---
T ss_pred             CCCCc----------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------------EEEEE---
Confidence            87421          112222234557899999977667666533 47888888765431            11110   


Q ss_pred             CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccce
Q 004290          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (763)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i  282 (763)
                                ......+.|+++|+++.++++=...+.|..+|+.... ...+.             ..    .+.-. ..
T Consensus       243 ----------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~-------------~~----~~~l~-~P  293 (400)
T 3p5b_L          243 ----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTIL-------------ED----EKRLA-HP  293 (400)
T ss_dssp             ----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-CEEEE-------------EC----SSTTS-SE
T ss_pred             ----------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc-cEEEE-------------eC----CCCCC-CC
Confidence                      1124568999998765555555567889999986432 11110             00    00001 24


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeec-CCCCeeeeeccC
Q 004290          283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPT  332 (763)
Q Consensus       283 ~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~  332 (763)
                      .+|++. .+..+++-...+.|..+|..++......... ..+.....++|.
T Consensus       294 ~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~~  343 (400)
T 3p5b_L          294 FSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNL  343 (400)
T ss_dssp             EEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEESGG
T ss_pred             EEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEeec
Confidence            566663 3344445556788999997776544333322 223334445553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.61  E-value=0.0049  Score=62.99  Aligned_cols=202  Identities=11%  Similarity=0.055  Sum_probs=113.9

Q ss_pred             CceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEc---cC-CCCceEEEEEee-CCCCcEEEEEeC---------
Q 004290           51 GCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIE---TG-HSANVFCTKFVP-ETSDELVVSGAG---------  115 (763)
Q Consensus        51 ~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~---~~-h~~~V~~v~~~p-~~~~~~l~s~s~---------  115 (763)
                      ..+..+++.+ +|+++++ ...+.|..+|..+++. ..+.   .+ .......+++.| +  +++.++-..         
T Consensus        80 ~~p~gi~~~~~~g~l~v~-d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~--G~l~v~d~~~~~~~~~~~  155 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIV-DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRT--GIVYFTDVSTLYDDRGVQ  155 (322)
T ss_dssp             CCEEEEEEETTTTEEEEE-ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTT--CCEEEEESCSSCCTTCHH
T ss_pred             CCCceEEEcCCCCcEEEE-ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCC--CEEEEECCcccccccccc
Confidence            3578999998 6665554 4445588899876542 2221   11 113478899999 7  677776432         


Q ss_pred             --------CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290          116 --------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG  187 (763)
Q Consensus       116 --------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  187 (763)
                              ++.|..||...+.           ...+.........|+++|++..++++-...+.|.+|++.....-    
T Consensus       156 ~~~~~~~~~g~v~~~d~~~~~-----------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~----  220 (322)
T 2fp8_A          156 QIMDTSDKTGRLIKYDPSTKE-----------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG----  220 (322)
T ss_dssp             HHHHHTCCCEEEEEEETTTTE-----------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT----
T ss_pred             eehcccCCCceEEEEeCCCCE-----------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC----
Confidence                    3668888876421           22222223456789999944335555566789999998753210    


Q ss_pred             CCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC----------CCcEEEEeCCCCCCCcccCCC
Q 004290          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKR  257 (763)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~----------Dg~i~iwd~~~~~~~~~~~~~  257 (763)
                           ....+.           ..+   . ...++++++ ++++++...          .+.|..+|.. ++.+..+..+
T Consensus       221 -----~~~~~~-----------~~~---g-P~gi~~d~~-G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~  278 (322)
T 2fp8_A          221 -----TAEVLV-----------KIP---N-PGNIKRNAD-GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP  278 (322)
T ss_dssp             -----CEEEEE-----------ECS---S-EEEEEECTT-SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC
T ss_pred             -----ccceEE-----------eCC---C-CCCeEECCC-CCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC
Confidence                 001111           111   1 567899997 566555544          4668888764 4332222110


Q ss_pred             CCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                                       .|..-..++.+++ .+++..++....+.|..+++...
T Consensus       279 -----------------~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          279 -----------------PPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             -----------------TTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             -----------------CCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence                             1110113667776 35655555556889999998753

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.61  E-value=0.00015  Score=78.81  Aligned_cols=222  Identities=12%  Similarity=0.135  Sum_probs=125.0

Q ss_pred             CCCCEEEEEe-CCCcEEEEeCCCCeEEEEEccCCCCceEEEEE-e-eCCCCcEEEEEe------------------CCCc
Q 004290           60 SKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKF-V-PETSDELVVSGA------------------GDAE  118 (763)
Q Consensus        60 p~g~~Lasgs-~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~-~-p~~~~~~l~s~s------------------~dg~  118 (763)
                      +||++|.... .+..|.+.|+.+.++...+.......+..+++ . |+  +.+++.++                  .++.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~--~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR--SNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB--CSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCC--CcEEEEecccccccCCCCcccccccccCce
Confidence            3788777655 45679999999999888542233456888888 4 88  67777774                  2457


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC---------------cEEEEECCCCCCC
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---------------TLRQHDFRQGSSC  183 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg---------------~i~iwd~~~~~~~  183 (763)
                      +.+.|..+.          +....+.- .+....++++|+ +.++++.+.+.               .|.+.|.......
T Consensus       177 vtvID~~t~----------~v~~qI~V-gg~pd~~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~  244 (595)
T 1fwx_A          177 FTAVDADKW----------EVAWQVLV-SGNLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  244 (595)
T ss_dssp             EEEEETTTT----------EEEEEEEE-SSCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             EEEEECCCC----------eEEEEEEe-CCCccceEECCC-CCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence            888888862          22333331 124567889995 56666666442               3666665432211


Q ss_pred             CCCCCCCcccceEEEecCC--Cce--eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004290          184 PPAGSSHQECRNILLDLRC--GAK--RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (763)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~  259 (763)
                      ........-....++|...  +..  ..+..    .....++.++|++...++++..+..|.++|+.+.+...  .....
T Consensus       245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv----g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~--~~~l~  318 (595)
T 1fwx_A          245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPI----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--YENAD  318 (595)
T ss_dssp             HHHTCSEEETTEEEEECSGGGCCSSEEEEEE----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--HSCCC
T ss_pred             ccCCCeeEECcEEEEeCcccCCceeEEEEec----CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc--ccccC
Confidence            0000000001234444443  111  01100    12345789999854445555578999999998642110  00000


Q ss_pred             CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q 004290          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH  310 (763)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~  310 (763)
                      +..++..        .-.-+.....++|+|+| ++++.. .|+.|..||+..
T Consensus       319 ~~~~v~~--------~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          319 PRSAVVA--------EPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             GGGGEEE--------CCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             cccceEE--------EcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            0000000        00111247789999999 666555 499999999977

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.58  E-value=0.0018  Score=62.81  Aligned_cols=192  Identities=11%  Similarity=0.100  Sum_probs=110.3

Q ss_pred             eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC
Q 004290           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP  160 (763)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  160 (763)
                      +.+.++......-...+.|+ +  +.++.+.+.+|  .|+++|+.+++          .+..+.- ..........+.+.
T Consensus        32 ~vv~~~phd~~~ftqGL~~~-~--~~LyestG~~g~S~v~~vD~~Tgk----------v~~~~~l-~~~~FgeGit~~g~   97 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYR-N--GYFYESTGLNGRSSIRKVDIESGK----------TLQQIEL-GKRYFGEGISDWKD   97 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEE-T--TEEEEEEEETTEEEEEEECTTTCC----------EEEEEEC-CTTCCEEEEEEETT
T ss_pred             EEEEEecCCCCcccceEEEE-C--CEEEEECCCCCCceEEEEECCCCc----------EEEEEec-CCccceeEEEEeCC
Confidence            34556632233445889998 5  67888888776  89999999743          2333322 23343333333344


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004290          161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (763)
Q Consensus       161 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i  240 (763)
                      .+.+..-.++.+.+||..+.+...                      .+.. ..     ....+.++ +..|+.+..++.|
T Consensus        98 ~ly~ltw~~~~v~v~D~~t~~~~~----------------------ti~~-~~-----eG~glt~d-g~~L~~SdGs~~i  148 (262)
T 3nol_A           98 KIVGLTWKNGLGFVWNIRNLRQVR----------------------SFNY-DG-----EGWGLTHN-DQYLIMSDGTPVL  148 (262)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEE----------------------EEEC-SS-----CCCCEEEC-SSCEEECCSSSEE
T ss_pred             EEEEEEeeCCEEEEEECccCcEEE----------------------EEEC-CC-----CceEEecC-CCEEEEECCCCeE
Confidence            566566678999999998876320                      0100 01     11123344 3456555567889


Q ss_pred             EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeec
Q 004290          241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV  320 (763)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~  320 (763)
                      .++|..+.+.+..+....                .+..-..++.+.|. +|+..+....++.|.+.|..+++........
T Consensus       149 ~~iDp~T~~v~~~I~V~~----------------~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~  211 (262)
T 3nol_A          149 RFLDPESLTPVRTITVTA----------------HGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLN  211 (262)
T ss_dssp             EEECTTTCSEEEEEECEE----------------TTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECT
T ss_pred             EEEcCCCCeEEEEEEecc----------------CCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECC
Confidence            999999887554432110                11111135667776 6764444445889999999997644333221


Q ss_pred             ------------CCCCeeeeeccCCC
Q 004290          321 ------------GDASKIMSFTPTLN  334 (763)
Q Consensus       321 ------------~~~~~~~~~~p~~~  334 (763)
                                  ....+.+||+|..+
T Consensus       212 ~L~~~~~~~~~~~~vlNGIA~dp~~~  237 (262)
T 3nol_A          212 GILAEAGPLPSPIDVLNGIAWDKEHH  237 (262)
T ss_dssp             TGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred             cCccccccccCcCCceEEEEEcCCCC
Confidence                        22445677777543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.57  E-value=0.035  Score=61.58  Aligned_cols=61  Identities=10%  Similarity=-0.088  Sum_probs=46.6

Q ss_pred             CCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccC
Q 004290          647 DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG  708 (763)
Q Consensus       647 ~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~  708 (763)
                      .+|.|+.||..||+.+-.+.... .+.+..+...+.+++.++.|+.|+.||.++++.+..+.
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence            57899999999999988776432 33333444456677778999999999999999887664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.56  E-value=0.0073  Score=58.52  Aligned_cols=190  Identities=8%  Similarity=0.017  Sum_probs=113.4

Q ss_pred             eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE
Q 004290           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (763)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  162 (763)
                      +.+.++...-......+.|+.   +.++++.+.+|.|+++|+.+++          .+..+  -..........+.+..+
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~---~~Ly~stG~~g~v~~iD~~Tgk----------v~~~~--l~~~~FgeGit~~g~~L  108 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQ---GHFFESTGHQGTLRQLSLESAQ----------PVWME--RLGNIFAEGLASDGERL  108 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEET---TEEEEEETTTTEEEECCSSCSS----------CSEEE--ECTTCCEEEEEECSSCE
T ss_pred             EEEEEEcCCCccccceEEEEC---CEEEEEcCCCCEEEEEECCCCc----------EEeEE--CCCCcceeEEEEeCCEE
Confidence            445555323334457888874   5888899999999999999743          23333  22233332233335566


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEE
Q 004290          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (763)
Q Consensus       163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~i  242 (763)
                      ++..-.++.+.+||..+.+..              -        .+.. ...   -..++  ++ ++.|+++..++.|.+
T Consensus       109 y~ltw~~~~v~V~D~~Tl~~~--------------~--------ti~~-~~e---GwGLt--~D-g~~L~vSdGs~~l~~  159 (268)
T 3nok_A          109 YQLTWTEGLLFTWSGMPPQRE--------------R--------TTRY-SGE---GWGLC--YW-NGKLVRSDGGTMLTF  159 (268)
T ss_dssp             EEEESSSCEEEEEETTTTEEE--------------E--------EEEC-SSC---CCCEE--EE-TTEEEEECSSSEEEE
T ss_pred             EEEEccCCEEEEEECCcCcEE--------------E--------EEeC-CCc---eeEEe--cC-CCEEEEECCCCEEEE
Confidence            666777899999999887632              0        0110 011   12333  33 456777677899999


Q ss_pred             EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCCccceEeec-
Q 004290          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTV-  320 (763)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~-  320 (763)
                      +|..+.+.+.++....                .+..-..++.+.|. +|+ |.++. .++.|.+.|..+++........ 
T Consensus       160 iDp~T~~v~~~I~V~~----------------~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~~  221 (268)
T 3nok_A          160 HEPDGFALVGAVQVKL----------------RGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDASA  221 (268)
T ss_dssp             ECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEECHH
T ss_pred             EcCCCCeEEEEEEeCC----------------CCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEECCC
Confidence            9999887655442211                11111136777877 775 55554 5889999999997643333221 


Q ss_pred             ------------CCCCeeeeeccCCC
Q 004290          321 ------------GDASKIMSFTPTLN  334 (763)
Q Consensus       321 ------------~~~~~~~~~~p~~~  334 (763)
                                  ....+.+||.|..+
T Consensus       222 L~~~~~~~~~~~~~vlNGIA~dp~~~  247 (268)
T 3nok_A          222 LTRAVAGQVTNPEAVLNGIAVEPGSG  247 (268)
T ss_dssp             HHHHHTTTCCCTTCCEEEEEECTTTC
T ss_pred             CcccccccccCcCCceEEEEEcCCCC
Confidence                        23456677777543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.53  E-value=0.0014  Score=67.10  Aligned_cols=179  Identities=9%  Similarity=0.039  Sum_probs=108.9

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004290           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (763)
Q Consensus        62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  141 (763)
                      +..|..++.++.|..+|.. ++..... ......+.++...++  +. |..++.++.|..+|.. +.          ...
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~~~~--g~-l~vgt~~~~l~~~d~~-g~----------~~~  170 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRF-KTKKAIYATPIVSED--GT-IYVGSNDNYLYAINPD-GT----------EKW  170 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEECTT--SC-EEEECTTSEEEEECTT-SC----------EEE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEE-cCCCceeeeeEEcCC--CE-EEEEcCCCEEEEECCC-CC----------EeE
Confidence            4557778888999999998 7766665 344445566666665  44 6667778999999987 32          133


Q ss_pred             eeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEE
Q 004290          142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  221 (763)
Q Consensus       142 ~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  221 (763)
                      .+......+.++.+.+ ++.++ .++  +.|..+| .+++              .++....           ....+.++
T Consensus       171 ~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~--------------~~~~~~~-----------~~~~~~~~  220 (330)
T 3hxj_A          171 RFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PDGT--------------EKWNFYA-----------GYWTVTRP  220 (330)
T ss_dssp             EEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TTSC--------------EEEEECC-----------SSCCCSCC
T ss_pred             EEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CCCc--------------EEEEEcc-----------CCcceece
Confidence            4444455677777766 44444 444  8899999 5543              1121111           11345666


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 004290          222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE  301 (763)
Q Consensus       222 ~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~  301 (763)
                      ...++ + .|.+++.++.|..+|. ++..+..+..                    ... .+..+.+.+++. |.+++.++
T Consensus       221 ~~~~~-g-~l~v~t~~~gl~~~~~-~g~~~~~~~~--------------------~~~-~~~~~~~~~~g~-l~v~t~~g  275 (330)
T 3hxj_A          221 AISED-G-TIYVTSLDGHLYAINP-DGTEKWRFKT--------------------GKR-IESSPVIGNTDT-IYFGSYDG  275 (330)
T ss_dssp             EECTT-S-CEEEEETTTEEEEECT-TSCEEEEEEC--------------------SSC-CCSCCEECTTSC-EEEECTTC
T ss_pred             EECCC-C-eEEEEcCCCeEEEECC-CCCEeEEeeC--------------------CCC-ccccceEcCCCe-EEEecCCC
Confidence            77775 3 5667777888888874 3332211100                    000 133355566665 77888888


Q ss_pred             eEEEEECCCCC
Q 004290          302 HVYLMDVNHAG  312 (763)
Q Consensus       302 ~i~iwd~~~~~  312 (763)
                      .|+.+|. +++
T Consensus       276 gl~~~d~-~g~  285 (330)
T 3hxj_A          276 HLYAINP-DGT  285 (330)
T ss_dssp             EEEEECT-TSC
T ss_pred             CEEEECC-CCc
Confidence            9999986 434

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.53  E-value=0.027  Score=57.29  Aligned_cols=223  Identities=9%  Similarity=0.037  Sum_probs=132.2

Q ss_pred             CceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           51 GCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        51 ~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      ..+.+|+|.+. +.+..+-...+.|..+++..+.....+....-.....+++.+.. +.++++-...+.|.++++.... 
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~-  112 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSL-  112 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC-CeEEEEECCCCEEEEEECCCCc-
Confidence            35678999985 55556666778899999876632111111222456789998763 5666776677899999987421 


Q ss_pred             CCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290          130 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (763)
Q Consensus       130 ~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (763)
                                ...+ .........|++.|.++.++++-. ..+.|...++.....            ..+..        
T Consensus       113 ----------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------------~~~~~--------  162 (318)
T 3sov_A          113 ----------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------------FIIIN--------  162 (318)
T ss_dssp             ----------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC------------EEEEC--------
T ss_pred             ----------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe------------EEEEE--------
Confidence                      2222 234456789999996666666653 357888888764321            11110        


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (763)
Q Consensus       208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~  287 (763)
                           ......+.++++|+++.++++=+..+.|..+|+.... ...+             ...      . ......+++
T Consensus       163 -----~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~-------------~~~------~-~~~P~glav  216 (318)
T 3sov_A          163 -----SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAV-------------VKG------S-LPHPFALTL  216 (318)
T ss_dssp             -----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE-------------ECS------C-CSCEEEEEE
T ss_pred             -----CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEE-------------ecC------C-CCCceEEEE
Confidence                 1123468999999766556665667889999986422 1111             000      0 012566777


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCCccceEeec-CCCCeeeeeccC
Q 004290          288 SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPT  332 (763)
Q Consensus       288 spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~  332 (763)
                      .. +..+.+-...+.|..++..+++........ ..+.....++|.
T Consensus       217 ~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v~~~~  261 (318)
T 3sov_A          217 FE-DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQ  261 (318)
T ss_dssp             ET-TEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEEECGG
T ss_pred             eC-CEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEEeccc
Confidence            53 344445555889999999876644333222 233334445553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.51  E-value=0.0047  Score=63.15  Aligned_cols=202  Identities=9%  Similarity=0.062  Sum_probs=115.4

Q ss_pred             eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcc-C------------------CCCceEEEEEeeCCC
Q 004290           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET-G------------------HSANVFCTKFVPETS  106 (763)
Q Consensus        46 l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~-~------------------h~~~V~~v~~~p~~~  106 (763)
                      +.+.-....+++|.++|++|.++..++.|..||..+++.. .+.. .                  ....+.++++.++. 
T Consensus        14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~-   91 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN-   91 (322)
T ss_dssp             EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT-
T ss_pred             cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCC-
Confidence            3343345678999999998888888999999998876432 2211 0                  01357899999831 


Q ss_pred             CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeec-----ccCceeEEEEec-CCCCEEEEEeC------------
Q 004290          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-----HTRRVKKLAVEV-GNPHVVWSASE------------  168 (763)
Q Consensus       107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~sp-~~~~~l~s~s~------------  168 (763)
                      ++ |+.+...+.|..+|...+.           +..+..     .......+++.+ ++ ++.++-..            
T Consensus        92 g~-l~v~d~~~~i~~~d~~~g~-----------~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           92 NQ-LYIVDCYYHLSVVGSEGGH-----------ATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             TE-EEEEETTTEEEEECTTCEE-----------CEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHH
T ss_pred             Cc-EEEEECCCCEEEEeCCCCE-----------EEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceeh
Confidence            44 4445445558888876421           111111     123467788887 44 55544322            


Q ss_pred             -----CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEE-eCCCcEEE
Q 004290          169 -----DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-GSDAFARL  242 (763)
Q Consensus       169 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sg-s~Dg~i~i  242 (763)
                           ++.|..||..+++.            ..+..              .....+.++|+|+ ++.|+++ +..+.|.+
T Consensus       159 ~~~~~~g~v~~~d~~~~~~------------~~~~~--------------~~~~p~gia~~~d-g~~lyv~d~~~~~I~~  211 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKET------------TLLLK--------------ELHVPGGAEVSAD-SSFVLVAEFLSHQIVK  211 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEE------------EEEEE--------------EESCCCEEEECTT-SSEEEEEEGGGTEEEE
T ss_pred             cccCCCceEEEEeCCCCEE------------EEecc--------------CCccCcceEECCC-CCEEEEEeCCCCeEEE
Confidence                 25566676554321            00000              0123457899997 5655544 56689999


Q ss_pred             EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC----------CCeEEEEECC
Q 004290          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVN  309 (763)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~----------d~~i~iwd~~  309 (763)
                      |++..... .          ....+.  ..  .+     ...+++.++|++.++...          .+.|..+|..
T Consensus       212 ~~~~~~~~-~----------~~~~~~--~~--~g-----P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          212 YWLEGPKK-G----------TAEVLV--KI--PN-----PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             EESSSTTT-T----------CEEEEE--EC--SS-----EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred             EECCCCcC-C----------ccceEE--eC--CC-----CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC
Confidence            99875311 0          011110  00  11     567899999986666544          3556666653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.49  E-value=0.042  Score=60.97  Aligned_cols=63  Identities=10%  Similarity=-0.062  Sum_probs=46.9

Q ss_pred             cCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccCC
Q 004290          646 SDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGG  709 (763)
Q Consensus       646 s~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~g  709 (763)
                      ..+|.|+-||..||+.+-....+. .+..-.....+.+++.++.|+.++.||.++++.+..+..
T Consensus       463 ~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          463 DHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            357999999999999987765432 222222233466778899999999999999998877653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.47  E-value=0.019  Score=63.83  Aligned_cols=61  Identities=11%  Similarity=-0.083  Sum_probs=44.6

Q ss_pred             CCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccC
Q 004290          647 DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG  708 (763)
Q Consensus       647 ~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~  708 (763)
                      .+|.|.-||+.||+.+-...-. .+++.-.....+.+++.++.|+.|+.||.++++.+..+.
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence            4689999999999988766421 122222223356677779999999999999999887664

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.45  E-value=0.025  Score=62.90  Aligned_cols=50  Identities=12%  Similarity=0.276  Sum_probs=38.9

Q ss_pred             CCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcce-EEEEeeCCCC-eEEEE
Q 004290          638 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVV-NCVQCHPFDC-VVATS  687 (763)
Q Consensus       638 d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V-~~v~~sp~~~-~laS~  687 (763)
                      .+.+|+.|+.||.++.||.+||+++-.++...+.+ .-+.|..+++ |++..
T Consensus       496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence            57788889999999999999999999998765433 2366777886 55544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.43  E-value=0.033  Score=56.63  Aligned_cols=191  Identities=13%  Similarity=0.075  Sum_probs=115.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceee
Q 004290           64 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY  143 (763)
Q Consensus        64 ~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  143 (763)
                      +|+.+.. ..|+..|+.+......+  .....+.+++|++.. +.++++-...+.|..+++.......      .....+
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~-~~ly~~D~~~~~I~~~~~~g~~~~~------~~~~~~   72 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVI   72 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEE--CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------------CEEEE
T ss_pred             EEEEECC-CeEEEEECCCcceEehh--cCCCceEEEEEEeCC-CEEEEEECCCCcEEEEECCCCCCCc------ccEEEE
Confidence            3444333 57999999887665554  234568899999873 4566666667899999987410000      001112


Q ss_pred             ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEE
Q 004290          144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  223 (763)
Q Consensus       144 ~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  223 (763)
                      .........|++.+.+++++++-...+.|.++|+.....            ..+..             ........+++
T Consensus        73 ~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~------------~~~~~-------------~~~~~P~~iav  127 (316)
T 1ijq_A           73 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVV  127 (316)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE------------EEEEE-------------CTTCCEEEEEE
T ss_pred             eCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce------------EEEEE-------------CCCCCcceEEe
Confidence            222345688999876667777777788999999764321            11111             01234688999


Q ss_pred             eCCCCcEEEEEeCC-CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC
Q 004290          224 SSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE  301 (763)
Q Consensus       224 ~p~~~~~l~sgs~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~  301 (763)
                      +|.++.++++.... +.|..+++... ....+             ...       .-...+.|+++|++..|+.+.. .+
T Consensus       128 dp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~-------------~~~-------~~~~P~gla~d~~~~~lY~~D~~~~  186 (316)
T 1ijq_A          128 DPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSL-------------VTE-------NIQWPNGITLDLLSGRLYWVDSKLH  186 (316)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSC-CEEEE-------------ECS-------SCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCCCCEEEEEccCCCCeEEEEcCCCC-CeEEE-------------EEC-------CCCCceEEEEeccCCEEEEEECCCC
Confidence            99756555554433 67888877532 11110             000       0113788999998777776654 67


Q ss_pred             eEEEEECCC
Q 004290          302 HVYLMDVNH  310 (763)
Q Consensus       302 ~i~iwd~~~  310 (763)
                      .|..+|+..
T Consensus       187 ~I~~~d~dg  195 (316)
T 1ijq_A          187 SISSIDVNG  195 (316)
T ss_dssp             EEEEEETTS
T ss_pred             eEEEEecCC
Confidence            999999875

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.42  E-value=0.0048  Score=71.21  Aligned_cols=120  Identities=13%  Similarity=0.093  Sum_probs=71.8

Q ss_pred             cccC-ceEEEEeC-CCCCEEEEEeC-C----CcEEEEeCCCC-eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---
Q 004290           48 GHQG-CVNAISWN-SKGSLLISGSD-D----THINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---  116 (763)
Q Consensus        48 gH~~-~V~~l~fs-p~g~~Lasgs~-D----~~v~iWd~~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---  116 (763)
                      +|.- .+...+|| |||++||-+.. +    .+|+++|+.++ +.+...   -......+.|+|+  ++.|+....|   
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspD--g~~l~y~~~d~~~  244 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPD--HTSLFYVTKDETL  244 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSS--TTEEEEEEECTTC
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecC--CCEEEEEEECCCC
Confidence            3443 68889999 99998885432 2    35999999998 632110   0112346889999  6666666654   


Q ss_pred             --CcEEEEECCCCCCCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCC
Q 004290          117 --AEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQG  180 (763)
Q Consensus       117 --g~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s~--dg~i~iwd~~~~  180 (763)
                        ..|.++++.++...        ....+. ........+.|+|++..++++...  ...|+++|+.++
T Consensus       245 ~~~~v~~~~lgt~~~~--------~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          245 RENKVWRHVMGKLQSE--------DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             CEEEEEEEETTSCGGG--------CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             CCCEEEEEECCCCchh--------cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence              25777887653211        112222 223446678999955434444432  335777887764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.39  E-value=0.061  Score=61.71  Aligned_cols=225  Identities=8%  Similarity=-0.023  Sum_probs=132.2

Q ss_pred             cCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCC----eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290           50 QGCVNAISWNSK-GSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (763)
Q Consensus        50 ~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~  124 (763)
                      ...+..|+|.+. +.++++-...+.|+.+++...    .....+ ......+..|++.+.. ++++++-...+.|.+.++
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-~~~l~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~l  500 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADT  500 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEET
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-ecCCCCcceeeeeecC-CcEEEEecCCCeEEEEeC
Confidence            456788999985 445556666788999998753    222233 3344567789999874 466777777889999998


Q ss_pred             CCCCCCCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290          125 SRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (763)
                      ....           ...+ .........|++.|..+.++++-... +.|...++.....            ..+..   
T Consensus       501 dG~~-----------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~------------~~lv~---  554 (791)
T 3m0c_C          501 KGVK-----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT---  554 (791)
T ss_dssp             TSSS-----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEEC---
T ss_pred             CCCe-----------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce------------EEEEe---
Confidence            7421           2222 23345688999999766677665433 6788888765431            11111   


Q ss_pred             CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccce
Q 004290          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (763)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i  282 (763)
                                ......+.|++++..+.++++=.....|..+++..... ..+.             ..    .+.-. ..
T Consensus       555 ----------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~-------------~~----~~~l~-~P  605 (791)
T 3m0c_C          555 ----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTIL-------------ED----EKRLA-HP  605 (791)
T ss_dssp             ----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-------------EC----TTTTS-SE
T ss_pred             ----------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEe-------------cC----CCccC-CC
Confidence                      12345789999987655555545567899999864321 1110             00    00001 24


Q ss_pred             eEEEEcCCCCEEEEEe-CCCeEEEEECCCCCccceEeec-CCCCeeeeeccCC
Q 004290          283 THVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTL  333 (763)
Q Consensus       283 ~~v~~spdg~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~~  333 (763)
                      .+|++.  +.+|+.+. ..+.|...+..++......... ..+..+..|+|..
T Consensus       606 ~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~  656 (791)
T 3m0c_C          606 FSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLT  656 (791)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGG
T ss_pred             CEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeecccc
Confidence            466663  33555554 5788999998776644433322 3344445566543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.35  E-value=0.055  Score=60.07  Aligned_cols=52  Identities=19%  Similarity=0.086  Sum_probs=38.3

Q ss_pred             CCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcc-eEEEEeeCCCC-eEEEEe
Q 004290          637 QRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV-VNCVQCHPFDC-VVATSG  688 (763)
Q Consensus       637 ~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~-V~~v~~sp~~~-~laS~s  688 (763)
                      ..+.+|+.|+.|+.++.||.+||+++-.++-..+. ..-+.|..+++ |+++.+
T Consensus       482 tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~  535 (599)
T 1w6s_A          482 TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY  535 (599)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             ecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence            36778888999999999999999999888755432 23456667775 555443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.34  E-value=0.029  Score=58.51  Aligned_cols=207  Identities=11%  Similarity=0.018  Sum_probs=113.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (763)
Q Consensus        61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (763)
                      ++..|+.++.++.|..+|..+|+.+..+. ............    +..++.++.++.|..+|..+++.          +
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~p~~~----~~~v~v~~~~g~l~~~d~~tG~~----------~  166 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTK-VAGEALSRPVVS----DGLVLIHTSNGQLQALNEADGAV----------K  166 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEE-CSSCCCSCCEEE----TTEEEEECTTSEEEEEETTTCCE----------E
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEe-CCCceEcCCEEE----CCEEEEEcCCCeEEEEECCCCcE----------E
Confidence            45677788899999999999999887663 222111111122    35788888899999999987431          2


Q ss_pred             eeeecccCc-----eeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC-----------------CCCCCc-------
Q 004290          141 ALYQCHTRR-----VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP-----------------AGSSHQ-------  191 (763)
Q Consensus       141 ~~~~~h~~~-----v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~-----------------~~~~~~-------  191 (763)
                      .........     .......  + ..++.++.++.|..+|..+++..-.                 ......       
T Consensus       167 W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~  243 (376)
T 3q7m_A          167 WTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVF  243 (376)
T ss_dssp             EEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEE
T ss_pred             EEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEE
Confidence            222211111     0112222  2 3566777888999999887764200                 000000       


Q ss_pred             ----ccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccc
Q 004290          192 ----ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (763)
Q Consensus       192 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  267 (763)
                          ......++...+.......    ......+...   +..+++++.++.|..+|..+++.+......          
T Consensus       244 ~~~~~g~l~~~d~~tG~~~w~~~----~~~~~~~~~~---~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~----------  306 (376)
T 3q7m_A          244 ALAYNGNLTALDLRSGQIMWKRE----LGSVNDFIVD---GNRIYLVDQNDRVMALTIDGGVTLWTQSDL----------  306 (376)
T ss_dssp             EECTTSCEEEEETTTCCEEEEEC----CCCEEEEEEE---TTEEEEEETTCCEEEEETTTCCEEEEECTT----------
T ss_pred             EEecCcEEEEEECCCCcEEeecc----CCCCCCceEE---CCEEEEEcCCCeEEEEECCCCcEEEeeccc----------
Confidence                0011112222222111111    0112233332   347778888899999999888644322100          


Q ss_pred             ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCcc
Q 004290          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  314 (763)
Q Consensus       268 ~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~  314 (763)
                              +..  .+.....  .+..|++++.+|.|+++|..+++..
T Consensus       307 --------~~~--~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          307 --------LHR--LLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             --------TTS--CCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             --------CCC--cccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence                    000  1122222  2467889999999999999997643

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.30  E-value=0.068  Score=56.26  Aligned_cols=193  Identities=12%  Similarity=0.067  Sum_probs=118.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceee
Q 004290           64 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY  143 (763)
Q Consensus        64 ~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  143 (763)
                      +|+.+.. ..|+..++........+  .....+..++|++.. +.++.+-...+.|+.+++.......      .....+
T Consensus        85 ~ll~~~~-~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~-~~lywsD~~~~~I~~~~~~g~~~~~------~~~~~~  154 (400)
T 3p5b_L           85 YLFFTNR-HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVI  154 (400)
T ss_dssp             EEEEEET-TEEEEECTTSCSCEEEE--CSCSCEEEEEEETTT-TEEEEEETTTTEEEEEEC------C------CCEEEE
T ss_pred             eeEEecc-ceeEEEccCCcceeEec--cccCcceEEeeeecc-CceEEEecCCCeEEEEEcccCCCCC------cceEEE
Confidence            4444443 68999999876554444  345678899999873 5555665667889999887421000      112222


Q ss_pred             ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEE
Q 004290          144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  223 (763)
Q Consensus       144 ~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  223 (763)
                      .........|++.+.+++++++-...+.|.+.++.....            ..+..             ........|++
T Consensus       155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~------------~~l~~-------------~~~~~P~~iav  209 (400)
T 3p5b_L          155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVV  209 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE------------EEEEE-------------CSSCCEEEEEE
T ss_pred             eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce------------EEEEe-------------CCCCCcceEEE
Confidence            224456788999886677777777788999998765431            11111             11234689999


Q ss_pred             eCCCCcEEEEEeC-CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC
Q 004290          224 SSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE  301 (763)
Q Consensus       224 ~p~~~~~l~sgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~  301 (763)
                      +|.++.++.+-.. .+.|...++..... ..+             ..     .+.  ...+.|+++|++..|+.+.. .+
T Consensus       210 dp~~g~ly~td~~~~~~I~~~~~dG~~~-~~~-------------~~-----~~l--~~P~glavd~~~~~lY~aD~~~~  268 (400)
T 3p5b_L          210 DPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSL-------------VT-----ENI--QWPNGITLDLLSGRLYWVDSKLH  268 (400)
T ss_dssp             ETTTTEEEEEECSSSCCEEEEETTSCSC-EEE-------------EC-----SSC--SCEEEEEEETTTTEEEEEETTTT
T ss_pred             ecccCeEEEEeCCCCCEEEEEeCCCCcc-EEE-------------EE-----CCC--CceEEEEEEeCCCEEEEEECCCC
Confidence            9975555554423 36788888764221 111             00     001  14788999998887777754 78


Q ss_pred             eEEEEECCCCC
Q 004290          302 HVYLMDVNHAG  312 (763)
Q Consensus       302 ~i~iwd~~~~~  312 (763)
                      .|..+|+....
T Consensus       269 ~I~~~d~dG~~  279 (400)
T 3p5b_L          269 SISSIDVNGGN  279 (400)
T ss_dssp             EEEEEETTSCC
T ss_pred             EEEEEeCCCCc
Confidence            99999987643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.28  E-value=0.014  Score=55.95  Aligned_cols=174  Identities=13%  Similarity=0.034  Sum_probs=100.9

Q ss_pred             eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC
Q 004290           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP  160 (763)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  160 (763)
                      +.+.++.......+..+.|++.   .++.+.+.+|  .|+.+|+.+++          .+.... -..........+.+.
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~~---~LyestG~~g~S~v~~vD~~tgk----------v~~~~~-l~~~~fgeGi~~~~~   75 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLRG---HLYESTGETGRSSVRKVDLETGR----------ILQRAE-VPPPYFGAGIVAWRD   75 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEETT---EEEEEECCTTSCEEEEEETTTCC----------EEEEEE-CCTTCCEEEEEEETT
T ss_pred             EEEEEcCCCCccccccEEEECC---EEEEECCCCCCceEEEEECCCCC----------EEEEEe-CCCCcceeEEEEeCC
Confidence            4455553223345679999864   6777777754  89999999743          233332 122333332333345


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004290          161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (763)
Q Consensus       161 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i  240 (763)
                      ++++..-.++.+.+||..+.+..              -        .+.. .+.   -..++  ++ +..|+++..++.|
T Consensus        76 ~ly~ltw~~~~v~v~D~~tl~~~--------------~--------ti~~-~~~---Gwglt--~d-g~~L~vSdgs~~l  126 (243)
T 3mbr_X           76 RLIQLTWRNHEGFVYDLATLTPR--------------A--------RFRY-PGE---GWALT--SD-DSHLYMSDGTAVI  126 (243)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEE--------------E--------EEEC-SSC---CCEEE--EC-SSCEEEECSSSEE
T ss_pred             EEEEEEeeCCEEEEEECCcCcEE--------------E--------EEeC-CCC---ceEEe--eC-CCEEEEECCCCeE
Confidence            66666677899999999887632              0        0110 011   12333  44 3455555668899


Q ss_pred             EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccce
Q 004290          241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM  316 (763)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~  316 (763)
                      .++|..+.+.+.++....                .+..-..++.+.|. +|+..+....+..|.+.|..+++....
T Consensus       127 ~~iDp~t~~~~~~I~V~~----------------~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~  185 (243)
T 3mbr_X          127 RKLDPDTLQQVGSIKVTA----------------GGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAW  185 (243)
T ss_dssp             EEECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEE
T ss_pred             EEEeCCCCeEEEEEEEcc----------------CCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEE
Confidence            999999887654442110                11111136667766 666444444588999999999764433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.26  E-value=0.25  Score=57.13  Aligned_cols=200  Identities=10%  Similarity=0.052  Sum_probs=117.9

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-------------cCCCCceEEEEEeeCCCCcEEEEEeCC
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-------------TGHSANVFCTKFVPETSDELVVSGAGD  116 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~-------------~~h~~~V~~v~~~p~~~~~~l~s~s~d  116 (763)
                      ...|.++...++|.+.+ |+..+-|.++|..++.......             .-....|.++...++  +. |-.|+.+
T Consensus       257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~--g~-lWigt~~  332 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF--NN-IWIGTWG  332 (781)
T ss_dssp             CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSS--CC-EEEEEBS
T ss_pred             CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCC--CC-EEEEecC
Confidence            35688998888887554 5664568899988765332110             013457889888877  44 5556667


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeee----------cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290          117 AEVRLFNLSRFSGRGLDDNAITPSALYQ----------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (763)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~----------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  186 (763)
                      +-|..++.....           ...+.          -....|.++...+ ++ .|..|+.++-|..||..+....   
T Consensus       333 ~Gl~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~---  396 (781)
T 3v9f_A          333 GGINFISNAPPT-----------FHTWSYSPTQMNESSLSNKVVSSVCDDG-QG-KLWIGTDGGGINVFENGKRVAI---  396 (781)
T ss_dssp             SCEEEECSSCCS-----------CEEEC----CCCSSCCSSSCEEEEEECT-TS-CEEEEEBSSCEEEEETTEEEEE---
T ss_pred             CeEEEeCCCCCc-----------ceeeccCccccccCCCCCcceEEEEEcC-CC-CEEEEeCCCcEEEEECCCCeEE---
Confidence            778888877522           11111          1235688888876 33 3556776777999997654211   


Q ss_pred             CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004290          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (763)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (763)
                                  .....       .......|.++...++ + .|.+|+.++-|..||..+++..              .
T Consensus       397 ------------~~~~~-------~~~~~~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~--------------~  441 (781)
T 3v9f_A          397 ------------YNKEN-------RELLSNSVLCSLKDSE-G-NLWFGTYLGNISYYNTRLKKFQ--------------I  441 (781)
T ss_dssp             ------------CC------------CCCSBEEEEEECTT-S-CEEEEETTEEEEEECSSSCEEE--------------E
T ss_pred             ------------EccCC-------CCCCCcceEEEEECCC-C-CEEEEeccCCEEEEcCCCCcEE--------------E
Confidence                        00000       0112356888888875 4 4556777778889988765311              0


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +...     +.....|.++...++|.. ..|+. +-|.+||..++
T Consensus       442 ~~~~-----~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~  479 (781)
T 3v9f_A          442 IELE-----KNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASK  479 (781)
T ss_dssp             CCST-----TTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSS
T ss_pred             eccC-----CCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCC
Confidence            0000     111225899999888874 44555 56888887663

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.24  E-value=0.0077  Score=68.41  Aligned_cols=115  Identities=17%  Similarity=0.097  Sum_probs=73.8

Q ss_pred             EEEeCC-CCCEEEEEeCCC-----------cEEEEeCCCCeE--EEEEccCCCCceEEEEEeeCCCCcEEEEEeC-CCcE
Q 004290           55 AISWNS-KGSLLISGSDDT-----------HINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEV  119 (763)
Q Consensus        55 ~l~fsp-~g~~Lasgs~D~-----------~v~iWd~~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-dg~I  119 (763)
                      ++++.+ +|++++.|+.+.           .+.+||+.+++.  +..+...+.....++++.++  +.+++.|+. +..+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~--g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN--GQIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT--SCEEEECSSSTTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC--CCEEEeCCCCCCce
Confidence            566677 899999987653           588999988752  23332334444456777887  789999884 5689


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-CC-----CcEEEEECCCCC
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-ED-----GTLRQHDFRQGS  181 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-~d-----g~i~iwd~~~~~  181 (763)
                      .+||..+...        ..+..+... ..-.+++..+ ++++++.|+ .+     ..+.+||..+.+
T Consensus       268 ~~yd~~t~~W--------~~~~~~~~~-R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          268 SLYDSSSDSW--------IPGPDMQVA-RGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEEEGGGTEE--------EECCCCSSC-CSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEecCcCCce--------eECCCCCcc-ccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            9999986432        112222211 1123455556 567888888 34     579999987754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.22  E-value=0.038  Score=56.12  Aligned_cols=183  Identities=7%  Similarity=0.030  Sum_probs=112.8

Q ss_pred             CCcEEEEeCCCCe--EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC
Q 004290           71 DTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (763)
Q Consensus        71 D~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (763)
                      ...|+..|+....  ....+  .....+.+++|.+.. +.++.+-...+.|..+++.....         ....+.....
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~--~~~~~~~~ld~d~~~-~~lyw~D~~~~~I~r~~~~g~~~---------~~~~~~~~l~   79 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVV--GGLEDAAAVDFVFSH-GLIYWSDVSEEAIKRTEFNKTES---------VQNVVVSGLL   79 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEE--EEEEEEEEEEEEGGG-TEEEEEETTTTEEEEEETTSSSC---------CCEEEEECCS
T ss_pred             cCeEEEEECCCCceEEEEEe--cCCCccEEEEEEeCC-CEEEEEECCCCcEEEEEccCCCc---------eEEEEcCCCC
Confidence            4679999998753  21112  223457799999863 56666666778899999875311         0112222334


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCC
Q 004290          149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP  228 (763)
Q Consensus       149 ~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  228 (763)
                      ....+++.+.++.++++-...+.|.++++.....            ..+..             ........++++|.++
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------~~l~~-------------~~~~~P~giavdp~~g  134 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR------------KVLFW-------------QELDQPRAIALDPSSG  134 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-------------SSCSSEEEEEEEGGGT
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE------------EEEEe-------------CCCCCccEEEEeCCCC
Confidence            5778999886777777777788999999865421            11110             1223467899999755


Q ss_pred             cEEEEEe-CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEE
Q 004290          229 HLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLM  306 (763)
Q Consensus       229 ~~l~sgs-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iw  306 (763)
                      .++.+-. ..+.|...++.... ...+             ..     .+.  ..-+.|+|+|++..|+.+.. .+.|..+
T Consensus       135 ~ly~td~~~~~~I~r~~~dG~~-~~~~-------------~~-----~~l--~~Pnglavd~~~~~lY~aD~~~~~I~~~  193 (318)
T 3sov_A          135 FMYWTDWGEVPKIERAGMDGSS-RFII-------------IN-----SEI--YWPNGLTLDYEEQKLYWADAKLNFIHKS  193 (318)
T ss_dssp             EEEEEECSSSCEEEEEETTSCS-CEEE-------------EC-----SSC--SCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEEecCCCCEEEEEEcCCCC-eEEE-------------EE-----CCC--CCccEEEEeccCCEEEEEECCCCEEEEE
Confidence            4444432 35778888776321 1111             00     001  13688999997777776654 7899999


Q ss_pred             ECCCC
Q 004290          307 DVNHA  311 (763)
Q Consensus       307 d~~~~  311 (763)
                      ++...
T Consensus       194 d~dG~  198 (318)
T 3sov_A          194 NLDGT  198 (318)
T ss_dssp             ETTSC
T ss_pred             cCCCC
Confidence            98753

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.19  E-value=0.066  Score=61.44  Aligned_cols=188  Identities=12%  Similarity=0.077  Sum_probs=116.3

Q ss_pred             CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCc
Q 004290           70 DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (763)
Q Consensus        70 ~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (763)
                      ....|+..++........+  .....+..|+|.+.. +.++++-...+.|+.+++.......      .....+......
T Consensus       402 n~~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~~~-~~lY~sD~~~~~I~~~~l~g~~~~~------~~~~vi~~~l~~  472 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVISRDIQA  472 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEE--CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------------CEEEECSSCSC
T ss_pred             cccceeEeeccCCcceeee--cCCCceEEEeecccC-CeeEEeeccceeEEEEeccCCCCCc------ceeEEEecCCCC
Confidence            3457888888766554444  334567899999863 5666666667889999887421000      112223334456


Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCc
Q 004290          150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH  229 (763)
Q Consensus       150 v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  229 (763)
                      ...|++.+.+++++++-...+.|.+.++.....            ..+..             ........|+++|.++.
T Consensus       473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~------------~~l~~-------------~~l~~P~gIaVDp~~g~  527 (791)
T 3m0c_C          473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVVDPVHGF  527 (791)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSSE------------EEEEE-------------CTTCCEEEEEEETTTTE
T ss_pred             cceeeeeecCCcEEEEecCCCeEEEEeCCCCeE------------EEEEe-------------CCCCCcceEEEecCCCC
Confidence            788999986777888888889999999875431            11211             11234689999997555


Q ss_pred             EEEEEeCC-CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEE
Q 004290          230 LLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMD  307 (763)
Q Consensus       230 ~l~sgs~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd  307 (763)
                      ++++-... +.|...++.... ...+             ....     .  ...+.|++++.+..|+.+.. .+.|..++
T Consensus       528 LYwtD~g~~~~I~~~~~dG~~-~~~l-------------v~~~-----l--~~P~GLavD~~~~~LYwaD~~~~~I~~~d  586 (791)
T 3m0c_C          528 MYWTDWGTPAKIKKGGLNGVD-IYSL-------------VTEN-----I--QWPNGITLDLLSGRLYWVDSKLHSISSID  586 (791)
T ss_dssp             EEEEECSSSCEEEEEETTSCC-EEEE-------------ECSS-----C--SCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEecCCCCCeEEEEecCCCc-eEEE-------------EeCC-----C--CCceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence            55544333 678888876322 1111             0000     1  14788999987777777654 67899999


Q ss_pred             CCCCC
Q 004290          308 VNHAG  312 (763)
Q Consensus       308 ~~~~~  312 (763)
                      +....
T Consensus       587 ~dG~~  591 (791)
T 3m0c_C          587 VNGGN  591 (791)
T ss_dssp             TTSCS
T ss_pred             cCCCc
Confidence            87644

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.07  E-value=0.72  Score=53.26  Aligned_cols=216  Identities=8%  Similarity=0.063  Sum_probs=119.8

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcc------CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~------~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~  124 (763)
                      ..|.++...++|.+++. ..+ -|.+||..+++...-...      .....|.++...++  + .|..|+..+-|.++|.
T Consensus       211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~--g-~lWigt~~~Gl~~~~~  285 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKD--N-KLWIATELNGIMILDL  285 (781)
T ss_dssp             SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTT--S-EEEEEESSSCEEEEET
T ss_pred             CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCC--C-CEEEEeCCCCeEEECC
Confidence            46889988888886654 444 688999887654322100      12356888888776  4 4555666567888998


Q ss_pred             CCCCCCCCCCCCC----CCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290          125 SRFSGRGLDDNAI----TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       125 ~~~~~~~~~~~~~----~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  200 (763)
                      .............    .......-....|.+|...+++  .|..|+.++-|..++.......             .+..
T Consensus       286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~-------------~~~~  350 (781)
T 3v9f_A          286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFH-------------TWSY  350 (781)
T ss_dssp             TCC---------CEEECBCSSTTSBSSSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCE-------------EEC-
T ss_pred             CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcce-------------eecc
Confidence            7532111000000    0000001134568888887633  4566777788999987654311             0000


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (763)
                      ....   ..........|.++...++ + .|.+|+.++-|..||..++...              .+...    .+....
T Consensus       351 ~~~~---~~~~~l~~~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~--------------~~~~~----~~~~~~  407 (781)
T 3v9f_A          351 SPTQ---MNESSLSNKVVSSVCDDGQ-G-KLWIGTDGGGINVFENGKRVAI--------------YNKEN----RELLSN  407 (781)
T ss_dssp             ---C---CCSSCCSSSCEEEEEECTT-S-CEEEEEBSSCEEEEETTEEEEE--------------CC---------CCCS
T ss_pred             Cccc---cccCCCCCcceEEEEEcCC-C-CEEEEeCCCcEEEEECCCCeEE--------------EccCC----CCCCCc
Confidence            0000   0000012346888888875 3 4667777777889998753211              00000    011122


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      .|.++...++|. |..|+.++-|..++..+
T Consensus       408 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~  436 (781)
T 3v9f_A          408 SVLCSLKDSEGN-LWFGTYLGNISYYNTRL  436 (781)
T ss_dssp             BEEEEEECTTSC-EEEEETTEEEEEECSSS
T ss_pred             ceEEEEECCCCC-EEEEeccCCEEEEcCCC
Confidence            599999888887 45577667788887765

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.03  E-value=0.13  Score=51.96  Aligned_cols=202  Identities=9%  Similarity=0.116  Sum_probs=117.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC--CCc---EEEEEeC---CCcEEEEECCCCCCCCCC
Q 004290           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET--SDE---LVVSGAG---DAEVRLFNLSRFSGRGLD  133 (763)
Q Consensus        62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~--~~~---~l~s~s~---dg~I~iwd~~~~~~~~~~  133 (763)
                      ..+++.....+-+.++|+ +|+.+..+ ..  +.++.+..-|.-  ++.   ++++...   +++|.+|++.....    
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~-~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~----  111 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSY-NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG----  111 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEE-CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC----
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEc-cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC----
Confidence            355665567788999999 88888887 32  567788777741  011   2333333   57899997742111    


Q ss_pred             CCCCCCceeee-------cccCceeEEEE--ecCCCC-EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290          134 DNAITPSALYQ-------CHTRRVKKLAV--EVGNPH-VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       134 ~~~~~~~~~~~-------~h~~~v~~l~~--sp~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                           .+..+.       .-...++.+++  +|..+. +++....+|.+..|++.....-       ......+..+.  
T Consensus       112 -----~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g-------~~~~~lVR~f~--  177 (355)
T 3amr_A          112 -----TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG-------YISGKKVRAFK--  177 (355)
T ss_dssp             -----CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS-------CEEEEEEEEEE--
T ss_pred             -----ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC-------cccceEEEEec--
Confidence                 122221       11156777888  664443 6777888899999998542100       00001111111  


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  283 (763)
                                ....+-.|...+. ...|+++-.+.-|..||.+-.....        ...+..+..      ++-...+.
T Consensus       178 ----------lgsq~EgcvvDd~-~g~Lyv~eEd~GIw~~da~p~~~~~--------~~~v~~~~~------g~l~aDvE  232 (355)
T 3amr_A          178 ----------MNSQTEGMAADDE-YGRLYIAEEDEAIWKFSAEPDGGSN--------GTVIDRADG------RHLTRDIE  232 (355)
T ss_dssp             ----------CSSCEEEEEEETT-TTEEEEEETTTEEEEEECSTTSCSC--------CEEEEEBSS------SSBCSCEE
T ss_pred             ----------CCCCcceEEEcCC-CCeEEEecccceEEEEeCCcCCCCC--------ceEEEEecC------CccccCcc
Confidence                      0125678888886 4689999998777777755211000        001111111      11111477


Q ss_pred             EEEE--cCCCC-EEEEEeC-CCeEEEEECCC
Q 004290          284 HVTF--SPNGE-EVLLSYS-GEHVYLMDVNH  310 (763)
Q Consensus       284 ~v~~--spdg~-~l~~~s~-d~~i~iwd~~~  310 (763)
                      .|++  .++++ ||++++. ++...+||...
T Consensus       233 GLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          233 GLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             eEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            7877  56666 7877774 88999999974

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.00  E-value=0.015  Score=66.08  Aligned_cols=96  Identities=11%  Similarity=0.136  Sum_probs=63.2

Q ss_pred             ccccchhhhhccccceeecc-ccCceEEEEeCCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEccCCCC-ceEEEEEeeCC
Q 004290           29 SLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPET  105 (763)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~g-H~~~V~~l~fsp~g~~Lasgs~-D~~v~iWd~~~~~~~~~~~~~h~~-~V~~v~~~p~~  105 (763)
                      .+.+++....++..+..+.. +.....++++..+|++++.|+. +..+.+||..+.+....- ..+.. .-.++...++ 
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~d-  297 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSD-  297 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTT-
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC-CCCccccccceEEecC-
Confidence            45666666666666665533 3344556788899999999984 568999999887644321 11211 1234556667 


Q ss_pred             CCcEEEEEe-CC-----CcEEEEECCCC
Q 004290          106 SDELVVSGA-GD-----AEVRLFNLSRF  127 (763)
Q Consensus       106 ~~~~l~s~s-~d-----g~I~iwd~~~~  127 (763)
                       +++++.|+ .+     ..+.+||..+.
T Consensus       298 -g~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          298 -GRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             -SCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             -CeEEEEeCcccCCcccccceEeCCCCC
Confidence             78999888 34     56999999764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.99  E-value=0.0017  Score=74.12  Aligned_cols=204  Identities=7%  Similarity=-0.030  Sum_probs=116.1

Q ss_pred             CceEEEEeCCCCCEEE-EEeCCCcEEEEeCCC----CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004290           51 GCVNAISWNSKGSLLI-SGSDDTHINVWSYSS----RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (763)
Q Consensus        51 ~~V~~l~fsp~g~~La-sgs~D~~v~iWd~~~----~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~  125 (763)
                      ..+..|+|.+.+..|. +-...+.|+.+++.+    ......+ ......+..|++.+.. +.++++-...+.|.++++.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-~~~~~~P~glavD~~~-g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-CSCC--CCCEECCCSS-SBCEECCTTTSCEEEEBSS
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-eCCCCCcceEEEEeeC-CcEEEEeccCCeEEEEecC
Confidence            3466889998665555 444568899999875    2221111 1122345678888653 5666666667889999987


Q ss_pred             CCCCCCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290          126 RFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                      ...           ...+ .........|++.|.++.++++-... +.|.++++......            .+.     
T Consensus       484 g~~-----------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~------------~l~-----  535 (699)
T 1n7d_A          484 GVK-----------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY------------SLV-----  535 (699)
T ss_dssp             SCC-----------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC------------EES-----
T ss_pred             CCc-----------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee------------EEE-----
Confidence            421           2222 22234567889998666666554333 67777776543210            110     


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  283 (763)
                            .  ......+.|+|+|+++.++++-...+.|..+|+.... ...+.             ..    .+... ...
T Consensus       536 ------~--~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~-------------~~----~~~~~-~P~  588 (699)
T 1n7d_A          536 ------T--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTIL-------------ED----EKRLA-HPF  588 (699)
T ss_dssp             ------C--SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEEC-------------CC----SSSCS-SCC
T ss_pred             ------e--CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEE-------------ec----CCcCC-Cce
Confidence                  0  0123456899999866677776777889999986422 11110             00    00000 133


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       284 ~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                      .|++..+ ..+++....+.|..++..+++
T Consensus       589 glavd~~-~lywtd~~~~~V~~~d~~~G~  616 (699)
T 1n7d_A          589 SLAVFED-KVFWTDIINEAIFSANRLTGS  616 (699)
T ss_dssp             CCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred             EeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence            4555444 344444557899999987754

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.84  E-value=0.1  Score=55.44  Aligned_cols=156  Identities=12%  Similarity=0.073  Sum_probs=92.7

Q ss_pred             ceEEEEeCCC---CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---Cc-EEEEEC
Q 004290           52 CVNAISWNSK---GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AE-VRLFNL  124 (763)
Q Consensus        52 ~V~~l~fsp~---g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---g~-I~iwd~  124 (763)
                      ....|+|+|+   |.++++ ...+.|+.+|..++......  .......+++|+++  ++++++....   .. +...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~d--G~lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLN--GDMVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTT--CCEEEEECCSCTTSEEEEEECG
T ss_pred             CCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEee--cCCCCccEEEECCC--CCEEEEcCCCCcccceEEEEEC
Confidence            4568999985   554444 33389999999887755433  34456899999999  6755554321   11 333332


Q ss_pred             CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                      ..  ..       .....+. .......++++|.++.++++-..++.|+.+|..++...           ..+....   
T Consensus       215 ~~--~~-------~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-----------~~~~~~~---  270 (433)
T 4hw6_A          215 AS--GF-------TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-----------EEEVMMD---  270 (433)
T ss_dssp             GG--TT-------CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-----------EEEEECS---
T ss_pred             CC--Ce-------ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-----------EEEeccC---
Confidence            21  10       0011222 33456778999866677767667788999998755410           0111100   


Q ss_pred             eeeccCCCCCccceEEEEEeCCCCc-EEEEEeCCCcEEEEeCC
Q 004290          205 KRSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRR  246 (763)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~~p~~~~-~l~sgs~Dg~i~iwd~~  246 (763)
                               .......++|+|+ ++ ++++-...+.|+.++..
T Consensus       271 ---------~~~~~~~ia~dpd-G~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          271 ---------TKGSNFHIVWHPT-GDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             ---------CCSSCEEEEECTT-SSEEEEEETTTTEEEEEEBC
T ss_pred             ---------CCCCcccEEEeCC-CCEEEEEeCCCCEEEEEeCC
Confidence                     0112246999998 55 55555567889998865

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.77  E-value=0.45  Score=53.13  Aligned_cols=220  Identities=9%  Similarity=0.026  Sum_probs=133.6

Q ss_pred             CceEEEEeCCCCCE-EEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           51 GCVNAISWNSKGSL-LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        51 ~~V~~l~fsp~g~~-Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      ..+..|+|++.+.. .++-..++.|..+++........+ ......+..+++.+.. ++++++-...+.|.+.++.... 
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~-  113 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-EFGLDYPEGMAVDWLG-KNLYWADTGTNRIEVSKLDGQH-  113 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSTT-
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-eCCCCCcceEEEEeCC-CEEEEEECCCCEEEEEecCCCc-
Confidence            45789999986554 456567789999998765443333 2223457789998774 5666666667889999987421 


Q ss_pred             CCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEE-eCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290          130 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (763)
Q Consensus       130 ~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (763)
                                ...+ .........|++.|..+.++++- +..+.|...++.....            ..+..        
T Consensus       114 ----------~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------------~~l~~--------  163 (628)
T 4a0p_A          114 ----------RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------------TTLVP--------  163 (628)
T ss_dssp             ----------CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC--------
T ss_pred             ----------EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce------------EEEEC--------
Confidence                      1222 23345678999999776666664 3356787787765431            11111        


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (763)
Q Consensus       208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~  287 (763)
                            .....+.++++++++.++++=...+.|..+|+..... ..+              .     .+..  ...+|++
T Consensus       164 ------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~--------------~-----~~l~--~P~glav  215 (628)
T 4a0p_A          164 ------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVI--------------A-----DDLP--HPFGLTQ  215 (628)
T ss_dssp             ------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE--------------E-----ECCS--CEEEEEE
T ss_pred             ------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEe--------------e-----ccCC--CceEEEE
Confidence                  2345789999997555555556678899999875321 111              0     0011  2456777


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCCccceEeec-CCCCeeeeeccC
Q 004290          288 SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPT  332 (763)
Q Consensus       288 spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~  332 (763)
                      .. +..+++-...+.|...|..+++........ ..+.....+++.
T Consensus       216 ~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~  260 (628)
T 4a0p_A          216 YQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSS  260 (628)
T ss_dssp             ET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGG
T ss_pred             EC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeec
Confidence            65 343444445889999998887644433322 223334455553

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.61  E-value=0.45  Score=53.13  Aligned_cols=191  Identities=7%  Similarity=0.003  Sum_probs=119.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceee
Q 004290           64 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY  143 (763)
Q Consensus        64 ~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  143 (763)
                      +|+.+ ....|+..|+.+......+....-..+..++|++.. +.++.+-..++.|..+++....          ....+
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~-~~lywtD~~~~~I~r~~~~g~~----------~~~v~   75 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTD-NRIYWTDISLKTISRAFMNGSA----------LEHVV   75 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS----------CEEEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCC-CEEEEEECCCCeEEEEECCCCC----------cEEEE
Confidence            44443 346899999987654443322334578899999974 5666666678899999887421          11222


Q ss_pred             ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEE
Q 004290          144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  223 (763)
Q Consensus       144 ~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  223 (763)
                      .........|++.+.+++++++-...+.|.+.++.....            ..+..             ........|++
T Consensus        76 ~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~------------~~l~~-------------~~l~~P~~iav  130 (628)
T 4a0p_A           76 EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR------------QVLVW-------------KDLDSPRALAL  130 (628)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC------------EEEEC-------------SSCCCEEEEEE
T ss_pred             eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE------------EEEEe-------------CCCCCcccEEE
Confidence            222346788999886777887877788999999865431            11111             11234689999


Q ss_pred             eCCCCcEEEEE-eCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC
Q 004290          224 SSTRPHLLLVG-GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE  301 (763)
Q Consensus       224 ~p~~~~~l~sg-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~  301 (763)
                      +|.++.++.+- +..+.|...++..... ..+             .      .+  -...+.|++++++..|+.+.. .+
T Consensus       131 dp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l-------------~------~~--~~~P~GlalD~~~~~LY~aD~~~~  188 (628)
T 4a0p_A          131 DPAEGFMYWTEWGGKPKIDRAAMDGSER-TTL-------------V------PN--VGRANGLTIDYAKRRLYWTDLDTN  188 (628)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSCSC-EEE-------------E------CS--CSSEEEEEEETTTTEEEEEETTTT
T ss_pred             ccCCCeEEEeCCCCCCEEEEEeCCCCce-EEE-------------E------CC--CCCcceEEEccccCEEEEEECCCC
Confidence            99756554443 2246677777653321 110             0      00  114788999998777777755 78


Q ss_pred             eEEEEECCCCCc
Q 004290          302 HVYLMDVNHAGG  313 (763)
Q Consensus       302 ~i~iwd~~~~~~  313 (763)
                      .|..+++.....
T Consensus       189 ~I~~~d~dG~~~  200 (628)
T 4a0p_A          189 LIESSNMLGLNR  200 (628)
T ss_dssp             EEEEEETTSCSC
T ss_pred             EEEEEcCCCCce
Confidence            999999977443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.50  E-value=0.18  Score=50.47  Aligned_cols=170  Identities=10%  Similarity=0.053  Sum_probs=105.1

Q ss_pred             eeccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEccC----CC--CceEEEEE---eeCCCCcEEEEEe
Q 004290           45 ELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETG----HS--ANVFCTKF---VPETSDELVVSGA  114 (763)
Q Consensus        45 ~l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~----h~--~~V~~v~~---~p~~~~~~l~s~s  114 (763)
                      .+.+..---.+++|.+. +.++++.-..++|..||...+........+    ..  ..+..|.|   .|+  ++++++..
T Consensus         7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~--grL~vv~~   84 (334)
T 2p9w_A            7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS--KRLFAVMK   84 (334)
T ss_dssp             EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC--CEEEEEEE
T ss_pred             EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC--CcEEEEEc
Confidence            34444445567899874 555555558999999999866443332122    11  24689999   577  67777644


Q ss_pred             -------------CCCcEEEEECC---CCCCCCCCCCCCCCceeeecc-----------cCceeEEEEecCCCCEEEEEe
Q 004290          115 -------------GDAEVRLFNLS---RFSGRGLDDNAITPSALYQCH-----------TRRVKKLAVEVGNPHVVWSAS  167 (763)
Q Consensus       115 -------------~dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~~h-----------~~~v~~l~~sp~~~~~l~s~s  167 (763)
                                   .+..|..+|+.   +++...        ...+...           ......|+..+ +++..++++
T Consensus        85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~--------~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s  155 (334)
T 2p9w_A           85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVW--------SVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFA  155 (334)
T ss_dssp             ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSE--------EEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEE
T ss_pred             ccccccccccccCCCCEEEEEcCCcCCCCCEEE--------EecCccccccccccccccccCCceeEECC-CCCEEEeCC
Confidence                         26779999988   432110        1111111           13488999999 567777888


Q ss_pred             CC-CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004290          168 ED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (763)
Q Consensus       168 ~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~  246 (763)
                      .- +.|...+.....             ...+.+...       ........+.|+++|+ +++|++....+.+..+|+.
T Consensus       156 ~~~~~I~rV~pdG~~-------------~~~~~~~~~-------~~~~~~G~nGIv~~pd-g~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          156 LGMPAIARVSADGKT-------------VSTFAWESG-------NGGQRPGYSGITFDPH-SNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             ESSCEEEEECTTSCC-------------EEEEEECCC-------CSSSCCSCSEEEEETT-TTEEEEESSSSSEEEEECS
T ss_pred             CCCCeEEEEeCCCCE-------------EeeeeecCC-------CcccccCcceEEEeCC-CCEEEEEcCCCeEEEEcCC
Confidence            77 777777654332             111211110       0112345779999997 6777777669999999988

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.43  E-value=0.072  Score=56.69  Aligned_cols=157  Identities=7%  Similarity=0.028  Sum_probs=96.6

Q ss_pred             ceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-CC----cEEEEECC
Q 004290           52 CVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA----EVRLFNLS  125 (763)
Q Consensus        52 ~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-dg----~I~iwd~~  125 (763)
                      ....|+|+| ++..|..+...+.|+.+|+.++......  ........++|+++  ++.|+.+.. ++    .+...+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~~--G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY--SGLSKVRTICWTHE--ADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE--CCCSCEEEEEECTT--SSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe--cCCCCcceEEEeCC--CCEEEEEeCCCCcccceEEEEeCC
Confidence            457899998 3555555544488999999877654443  34456889999999  675555443 22    23334432


Q ss_pred             CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004290          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (763)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (763)
                      . ..        .....+. .......++++|+++.++++-..++.|..+|.......            .+...     
T Consensus       214 g-~~--------~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~------------~~~~~-----  266 (430)
T 3tc9_A          214 S-GF--------KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT------------PLFTI-----  266 (430)
T ss_dssp             G-TS--------CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE------------EEEEC-----
T ss_pred             C-ce--------eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE------------EEEEc-----
Confidence            1 11        1112222 23456788999966777777777889999998754310            11110     


Q ss_pred             eeccCCCCCccceEEEEEeCCCCc-EEEEEeCCCcEEEEeCCC
Q 004290          206 RSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~~p~~~~-~l~sgs~Dg~i~iwd~~~  247 (763)
                             ........++|+|+ ++ ++++-...+.|..++...
T Consensus       267 -------~~~~~P~gia~~pd-G~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          267 -------QDSGWEFHIQFHPS-GNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             -------SSSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEET
T ss_pred             -------CCCCcceeEEEcCC-CCEEEEEECCCCEEEEEeCCc
Confidence                   01134578999998 56 555556678899988653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.42  E-value=0.078  Score=53.14  Aligned_cols=179  Identities=7%  Similarity=0.037  Sum_probs=104.9

Q ss_pred             CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeec----c--cCceeEEEE---ecCCCCE
Q 004290           92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC----H--TRRVKKLAV---EVGNPHV  162 (763)
Q Consensus        92 h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----h--~~~v~~l~~---sp~~~~~  162 (763)
                      ...-..+++|++.. +.++++.-..++|..||...+..        ..+ .+..    .  ...+..|.|   .|. +.+
T Consensus        11 ~~~yPE~~~wd~~~-g~~~vs~l~~g~V~~~~~~~~~~--------~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~-grL   79 (334)
T 2p9w_A           11 KNLTPEDTIYDRTR-QVFYQSNLYKGRIEVYNPKTQSH--------FNV-VIDGASSNGDGEQQMSGLSLLTHDNS-KRL   79 (334)
T ss_dssp             TTCCCSCEEEETTT-TEEEEEETTTTEEEEECTTTCCE--------EEE-CCTTTCCSSCCSEEEEEEEESSSSSC-CEE
T ss_pred             cccCCcCccCcCCC-CEEEEEeccCCEEEEEcCCCCeE--------EEE-ecCCccccCCCcceeeEEEEeccCCC-CcE
Confidence            33445688999863 55555555799999999874211        001 1211    0  113578999   674 567


Q ss_pred             EEEEe-------------CCCcEEEEECC---CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004290          163 VWSAS-------------EDGTLRQHDFR---QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (763)
Q Consensus       163 l~s~s-------------~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~  226 (763)
                      +++..             .+..|..+|+.   +++..            ...++..-...............+.++..++
T Consensus        80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~------------~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~  147 (334)
T 2p9w_A           80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPV------------WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD  147 (334)
T ss_dssp             EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCS------------EEEESHHHHHHHHHHHSSCCEEEEEEEECTT
T ss_pred             EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEE------------EEecCccccccccccccccccCCceeEECCC
Confidence            66543             25778999988   55432            1122110000000000001235789999997


Q ss_pred             CCcEEEEEeCC-CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEE
Q 004290          227 RPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL  305 (763)
Q Consensus       227 ~~~~l~sgs~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~i  305 (763)
                       |+..++++.- +.|..++.... .+..+....               +........+.++++|+|..|++....+.|..
T Consensus       148 -GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~---------------~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~  210 (334)
T 2p9w_A          148 -GNSYVAFALGMPAIARVSADGK-TVSTFAWES---------------GNGGQRPGYSGITFDPHSNKLIAFGGPRALTA  210 (334)
T ss_dssp             -SCEEEEEEESSCEEEEECTTSC-CEEEEEECC---------------CCSSSCCSCSEEEEETTTTEEEEESSSSSEEE
T ss_pred             -CCEEEeCCCCCCeEEEEeCCCC-EEeeeeecC---------------CCcccccCcceEEEeCCCCEEEEEcCCCeEEE
Confidence             7888888888 88777776643 111110000               00111124788999999999999988999999


Q ss_pred             EECCC
Q 004290          306 MDVNH  310 (763)
Q Consensus       306 wd~~~  310 (763)
                      +|+.+
T Consensus       211 fD~~~  215 (334)
T 2p9w_A          211 FDVSK  215 (334)
T ss_dssp             EECSS
T ss_pred             EcCCC
Confidence            99984

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.29  E-value=0.26  Score=56.59  Aligned_cols=116  Identities=14%  Similarity=0.083  Sum_probs=68.7

Q ss_pred             eEEEEeCCCCCEEEEEeCC-----CcEEEEeCCCCe--EEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---CCcEEEE
Q 004290           53 VNAISWNSKGSLLISGSDD-----THINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLF  122 (763)
Q Consensus        53 V~~l~fsp~g~~Lasgs~D-----~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---dg~I~iw  122 (763)
                      ...++|+|||+.|+....|     ..|.++++.++.  ....+..........+.|+|+  +++|+..+.   ...|.++
T Consensus       223 ~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~l~~~  300 (751)
T 2xe4_A          223 NGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD--TNTLCIGSQSPETAEVHLL  300 (751)
T ss_dssp             CSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT--SSEEEEEEECSSCEEEEEE
T ss_pred             eeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCC--CCEEEEEecCCCCceEEEE
Confidence            3468899999988877665     368888988763  122221223345678899999  677766552   3458888


Q ss_pred             ECCCCCCCCCCCCCCCC--ceeeecccCceeEEEEecCCCCEEEEEeCC--C--cEEEEECCC
Q 004290          123 NLSRFSGRGLDDNAITP--SALYQCHTRRVKKLAVEVGNPHVVWSASED--G--TLRQHDFRQ  179 (763)
Q Consensus       123 d~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d--g--~i~iwd~~~  179 (763)
                      |+..+.+        ..  ........+...++.|+. ++.+++....+  +  .|..+|+.+
T Consensus       301 d~~~~~~--------~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          301 DLRKGNA--------HNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             ESSSCTT--------CCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             ECCCCCC--------CceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            8876321        11  111223345556666654 54555555444  2  566666653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.27  E-value=1.2  Score=45.18  Aligned_cols=61  Identities=8%  Similarity=0.046  Sum_probs=40.7

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEec---CCcceEEEEeeCCCCeEEEEeCCCcEEEEcC
Q 004290          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLG---DEAVVNCVQCHPFDCVVATSGIDNTIKIWTP  698 (763)
Q Consensus       635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~g---H~~~V~~v~~sp~~~~laS~s~D~~IrvW~~  698 (763)
                      +.+++++++.|. +|.| .+..+.|+.-..+..   +...+.+|.|.+++ .++.+|.+|.|.-++-
T Consensus       257 ~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          257 YRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             ESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             ecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence            566777777665 6666 455666665555542   34568899998555 4666778998877764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.21  E-value=0.66  Score=47.05  Aligned_cols=200  Identities=11%  Similarity=0.059  Sum_probs=105.2

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~  128 (763)
                      +.+.+..+.+.+++..++.+. ++.|.. ..+.|+.-..+.......+..+.+.|+  +.+++.+...+..+-+|-.   
T Consensus       120 ~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~--~~~~~~g~~G~~~~S~d~g---  192 (327)
T 2xbg_A          120 LPGSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPS--GEYVAVSSRGSFYSTWEPG---  192 (327)
T ss_dssp             CSSCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTT--SCEEEEETTSSEEEEECTT---
T ss_pred             CCCCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCC--CcEEEEECCCcEEEEeCCC---
Confidence            335578888877777776654 554422 122343333332456668899999987  6777666443333334421   


Q ss_pred             CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (763)
                      +..     +..+  -......+..+.+.++ +.++ .++.+|.+++.+...++               -|..       +
T Consensus       193 G~t-----W~~~--~~~~~~~~~~~~~~~~-g~~~-~~~~~G~~~~s~~D~G~---------------tW~~-------~  241 (327)
T 2xbg_A          193 QTA-----WEPH--NRTTSRRLHNMGFTPD-GRLW-MIVNGGKIAFSDPDNSE---------------NWGE-------L  241 (327)
T ss_dssp             CSS-----CEEE--ECCSSSCEEEEEECTT-SCEE-EEETTTEEEEEETTEEE---------------EECC-------C
T ss_pred             CCc-----eeEC--CCCCCCccceeEECCC-CCEE-EEeCCceEEEecCCCCC---------------eeEe-------c
Confidence            111     1212  1234567888999884 4544 55667887776422111               0100       0


Q ss_pred             cCC-CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290          209 ADP-PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (763)
Q Consensus       209 ~~~-~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~  287 (763)
                      ... ......+.++++.++ +.+++++ .++.| ++....++.-..+...                 ..... .+..|.|
T Consensus       242 ~~~~~~~~~~~~~v~~~~~-~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~-----------------~~~~~-~~~~v~~  300 (327)
T 2xbg_A          242 LSPLRRNSVGFLDLAYRTP-NEVWLAG-GAGAL-LCSQDGGQTWQQDVDV-----------------KKVPS-NFYKILF  300 (327)
T ss_dssp             BCTTSSCCSCEEEEEESSS-SCEEEEE-STTCE-EEESSTTSSCEECGGG-----------------TTSSS-CCCEEEE
T ss_pred             cCCcccCCcceEEEEecCC-CEEEEEe-CCCeE-EEeCCCCcccEEcCcc-----------------CCCCC-CeEEEEE
Confidence            000 011234788889885 5555554 46766 3444444322111000                 00111 3778888


Q ss_pred             cCCCCEEEEEeCCCeEEEEEC
Q 004290          288 SPNGEEVLLSYSGEHVYLMDV  308 (763)
Q Consensus       288 spdg~~l~~~s~d~~i~iwd~  308 (763)
                      .+++. +++++.+|.|.-++-
T Consensus       301 ~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          301 FSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             EETTE-EEEECSTTEEEEECC
T ss_pred             ECCCc-eEEEcCCceEEEEcC
Confidence            75554 777788898877754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.18  E-value=1.5  Score=45.47  Aligned_cols=224  Identities=11%  Similarity=0.141  Sum_probs=128.8

Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  134 (763)
Q Consensus        55 ~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~  134 (763)
                      +.-.+|..+.||-=. ..++.|+|+++...++.+ . ....|.--.|..+   +.|+-.+ +..|+.|++...       
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~-~-~~e~VvfWkWis~---~~l~lVT-~taVyHWsi~~~-------  135 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-T-MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGE-------  135 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE-E-CSSCCCEEEEEET---TEEEEEC-SSEEEEEESSSS-------
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcce-e-cCCCceEEEecCC---CeEEEEc-CCeeEEecccCC-------
Confidence            344578888888665 579999999999998887 3 3456777788776   4666555 578999999742       


Q ss_pred             CCCCCceeeeccc----CceeEEEEecCCCCEEEEEe------CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          135 NAITPSALYQCHT----RRVKKLAVEVGNPHVVWSAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       135 ~~~~~~~~~~~h~----~~v~~l~~sp~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                        ..|.+.|..|.    ..|..-..+++...++++|-      -.|.+.+|..+.+...             .+      
T Consensus       136 --s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-------------~i------  194 (494)
T 1bpo_A          136 --SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-------------PI------  194 (494)
T ss_dssp             --CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-------------EE------
T ss_pred             --CCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-------------hh------
Confidence              24566666553    35666667774433444432      2467888887765411             11      


Q ss_pred             eeeccCCCCCccceEEEEEe--CCCCcEEEEEeC---CCcEEEEeCCCCC-CCcccCCCCCCCCcccccccccccCCCCC
Q 004290          205 KRSLADPPKQTLSLKSCDIS--STRPHLLLVGGS---DAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~~--p~~~~~l~sgs~---Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (763)
                             .+|......+.+.  +....+|+-+..   .+.++|-++.... ....+.     ...+..+.|    +....
T Consensus       195 -------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~-----kk~vdv~fp----pe~~~  258 (494)
T 1bpo_A          195 -------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-----KKAVDVFFP----PEAQN  258 (494)
T ss_dssp             -------CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC-----CEEEECCCC----TTSTT
T ss_pred             -------eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc-----ceeeeeeCC----ccccc
Confidence                   1222222222221  110122222222   2688888885421 100110     011111111    12223


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeec
Q 004290          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT  330 (763)
Q Consensus       279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  330 (763)
                      + ---++..++.-..++.-+.-|.|++||+.++.......-..+.+-..+..
T Consensus       259 D-FPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~  309 (494)
T 1bpo_A          259 D-FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH  309 (494)
T ss_dssp             C-CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE
T ss_pred             C-ceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEeccc
Confidence            3 25578889988899999999999999999987554444444444333333

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.01  E-value=0.43  Score=50.60  Aligned_cols=234  Identities=7%  Similarity=0.016  Sum_probs=116.1

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCC---Cc-EEEEeCCCCeE-EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004290           49 HQGCVNAISWNSKGSLLISGSDD---TH-INVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D---~~-v~iWd~~~~~~-~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd  123 (763)
                      .......|+|+++|+++++....   .. +...+...+.. ...+ . .......++++|.. +.++++-..++.|+.+|
T Consensus       180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~-~-~~~~P~giavd~~~-G~lyv~d~~~~~V~~~d  256 (433)
T 4hw6_A          180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSL-C-NARGAKTCAVHPQN-GKIYYTRYHHAMISSYD  256 (433)
T ss_dssp             CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEE-E-ECSSBCCCEECTTT-CCEEECBTTCSEEEEEC
T ss_pred             CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccc-c-ccCCCCEEEEeCCC-CeEEEEECCCCEEEEEE
Confidence            34568899999999955554321   12 33333322211 1112 1 22345678899942 67777766778899998


Q ss_pred             CCCCCCCCCCCCCCCCceee-e-cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec-
Q 004290          124 LSRFSGRGLDDNAITPSALY-Q-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL-  200 (763)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~-~-~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-  200 (763)
                      ...+..          ...+ . +.......|+|+|++..++++-...+.|+.+++.......       .....+... 
T Consensus       257 ~~~g~~----------~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~-------~~~~~~ag~~  319 (433)
T 4hw6_A          257 PATGTL----------TEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL-------AVPYIVCGQH  319 (433)
T ss_dssp             TTTCCE----------EEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB-------CCCEEEEECT
T ss_pred             CCCCeE----------EEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc-------CcEEEEEecC
Confidence            874321          0111 1 1122234699999554366666677899998876321100       000111110 


Q ss_pred             C-CCceeeccCCCCCccceEEEEE---------eCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccc
Q 004290          201 R-CGAKRSLADPPKQTLSLKSCDI---------SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  270 (763)
Q Consensus       201 ~-~~~~~~~~~~~~~~~~v~~i~~---------~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (763)
                      . .+.... ............+++         .++ ++++++-...+.|+.++. ++. +.++.....  .+...+...
T Consensus       320 g~~g~~dg-~~~~a~~~~P~giav~~n~~y~~dd~~-g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~--~~~~G~~dG  393 (433)
T 4hw6_A          320 SSPGWVDG-MGTGARLWGPNQGIFVKNEAYAGEEDE-YDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGN--SREWGYVDG  393 (433)
T ss_dssp             TCCCCBCE-EGGGSBCSSEEEEEEEECGGGTTSSCC-EEEEEEETTTTEEEEECT-TSE-EEEEECCCT--TCSSCCBCE
T ss_pred             CCCccCCC-cccceEEcCCccEEEEccccccccCCC-CcEEEEECCCCEEEEECC-CCC-EEEEEeCCC--CCccccCCC
Confidence            0 000000 000011234567888         554 566666666788999985 332 222111100  000000000


Q ss_pred             cccCCCCCccceeEEEEc-CCCCEEEEEeCCCeEEEEECC
Q 004290          271 HLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVN  309 (763)
Q Consensus       271 ~~~~~g~~~~~i~~v~~s-pdg~~l~~~s~d~~i~iwd~~  309 (763)
                      .......-. .-..|+++ ++|.++++=...+.|+.++++
T Consensus       394 ~~~~~~~~~-~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          394 ELRSQALFN-HPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             ETTTTCBCS-SEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ccccccEeC-CCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            000000111 36789999 566655555568889888764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.96  E-value=0.027  Score=64.13  Aligned_cols=164  Identities=9%  Similarity=0.034  Sum_probs=97.9

Q ss_pred             eEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC-CcEEEEECCCCCCC
Q 004290           53 VNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSGR  130 (763)
Q Consensus        53 V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d-g~I~iwd~~~~~~~  130 (763)
                      ...|++.+ .++++++-...+.|.+.++........+ .........+++.|.. +.++++-... +.|..+++....  
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~--  530 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-REQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVD--  530 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-CCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCC--
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEE-eCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCC--
Confidence            45688875 4555566566789999998765433333 3333456889999973 4444443333 677777765311  


Q ss_pred             CCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeecc
Q 004290          131 GLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (763)
Q Consensus       131 ~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (763)
                               ...+ .......+.|+|+|+++.++++-+..+.|..+|+.....            ..+..          
T Consensus       531 ---------~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~------------~~~~~----------  579 (699)
T 1n7d_A          531 ---------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------KTILE----------  579 (699)
T ss_dssp             ---------CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC------------EEECC----------
T ss_pred             ---------eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce------------EEEEe----------
Confidence                     1111 122345678999997778887877788999999864321            11111          


Q ss_pred             CCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCccc
Q 004290          210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (763)
Q Consensus       210 ~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~  254 (763)
                       ..........|++..+  .++++-...+.|..+|..+++.+..+
T Consensus       580 -~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          580 -DEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             -CSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             -cCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEEe
Confidence             0011122334555543  46666666788999998777654444

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.85  E-value=1.4  Score=49.17  Aligned_cols=201  Identities=7%  Similarity=-0.004  Sum_probs=119.1

Q ss_pred             CceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290           51 GCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (763)
Q Consensus        51 ~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~  129 (763)
                      ..+.+|+|.+.+ .++++-...+.|+.+++........+ ......+..+++.+.+ ++++++-+..+.|.+.++.... 
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-~~~~~~p~GlAvD~~~-~~lY~tD~~~~~I~v~~~~G~~-  425 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-TAQIAHPDGIAVDWVA-RNLYWTDTGTDRIEVTRLNGTM-  425 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-ECCCCCcCceEEeccc-CcEEEEeCCCCcEEEEeCCCCe-
Confidence            346788998854 44555556788999988764433333 3333567889998753 5677776778899999987421 


Q ss_pred             CCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290          130 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (763)
Q Consensus       130 ~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (763)
                                ...+ ...-.....|++.|..+.++++-. ..+.|...++.....            ..+.         
T Consensus       426 ----------~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~------------~~l~---------  474 (619)
T 3s94_A          426 ----------RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR------------VVLV---------  474 (619)
T ss_dssp             ----------CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEE---------
T ss_pred             ----------EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc------------EEEE---------
Confidence                      2222 223456889999996666666643 235677776653321            1111         


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (763)
Q Consensus       208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~  287 (763)
                          .......+.+++++..+.++++=+..+.|..+++.... ...+             ....+   .    ...+|++
T Consensus       475 ----~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~-~~~~-------------~~~~l---~----~P~glav  529 (619)
T 3s94_A          475 ----NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG-RRVL-------------VEDKI---P----HIFGFTL  529 (619)
T ss_dssp             ----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEE-------------EECCC---C----SSCCEEE
T ss_pred             ----eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc-eEEE-------------eccCC---C----CcEEEEE
Confidence                01234578999998755444444556789889886432 1111             00000   0    1234555


Q ss_pred             cCCCCEEEEEeC-CCeEEEEECCCCC
Q 004290          288 SPNGEEVLLSYS-GEHVYLMDVNHAG  312 (763)
Q Consensus       288 spdg~~l~~~s~-d~~i~iwd~~~~~  312 (763)
                      ..+  +|+.+.. .+.|...+..++.
T Consensus       530 ~~~--~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          530 LGD--YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             ETT--EEEEECTTSSCEEEEESSSCC
T ss_pred             ECC--EEEEeecCCCeEEEEEcCCCc
Confidence            433  5555544 6788888888864

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.82  E-value=3.1  Score=46.24  Aligned_cols=205  Identities=9%  Similarity=0.058  Sum_probs=121.2

Q ss_pred             cCceEEEEeCCCCCEEE-EEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290           50 QGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~La-sgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~  128 (763)
                      -+.+..|+|++.+..|. +-...+.|..+++........+.......+..+++.+.+ ++++++-...+.|.+.++....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~-~~ly~~d~~~~~I~v~~~dG~~  117 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSL  117 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC-CEEEEEeCCCCEEEEEECCCCC
Confidence            34578999998665554 545567899999876532222213333578999999963 5666666678899999987421


Q ss_pred             CCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290          129 GRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (763)
                                 ...+. ........|++.|.++.+++|-- ..+.|...++.....            ..+..       
T Consensus       118 -----------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~------------~~l~~-------  167 (619)
T 3s94_A          118 -----------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------------FIIIN-------  167 (619)
T ss_dssp             -----------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC-------
T ss_pred             -----------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce------------EEEEe-------
Confidence                       22222 34456789999997666666642 245676667654321            11110       


Q ss_pred             eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004290          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (763)
Q Consensus       207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~  286 (763)
                            ......+.++++++++.++++=...+.|..+|+..... ..+             ....+   .    ...+|+
T Consensus       168 ------~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~-~~~-------------~~~~~---~----~P~gi~  220 (619)
T 3s94_A          168 ------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAV-------------VKGSL---P----HPFALT  220 (619)
T ss_dssp             ------SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE-C-----------------------------CCCEE
T ss_pred             ------CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc-EEE-------------EeCCC---C----CceEEE
Confidence                  11245689999997565556656677899988864221 111             00000   0    134567


Q ss_pred             EcCCCCEEEEEe-CCCeEEEEECCCCCcc
Q 004290          287 FSPNGEEVLLSY-SGEHVYLMDVNHAGGR  314 (763)
Q Consensus       287 ~spdg~~l~~~s-~d~~i~iwd~~~~~~~  314 (763)
                      +..+  .|+.+. ..+.|...|..+++..
T Consensus       221 ~~~~--~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          221 LFED--ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             ESSS--EEEEECTTTCSEEEEESSSCCCC
T ss_pred             EeCC--EEEEecCCCCEEEEEECCCCccc
Confidence            7655  455554 4788999999886543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=95.78  E-value=1.5  Score=42.34  Aligned_cols=168  Identities=9%  Similarity=0.084  Sum_probs=99.5

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE---EEEEcc-----CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---LHSIET-----GHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~---~~~~~~-----~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw  122 (763)
                      .....|++.+++.++++.-.++.+.++++.....   +.....     ........++|.|.  ++.|.++.......||
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~--~~~L~va~E~~p~~i~  147 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ--DHTFWFFKEKNPIEVY  147 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT--TTEEEEEEESSSEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCC--CCEEEEEECcCCceEE
Confidence            4577888988888777765678899998765432   222211     23345689999999  4555556555555555


Q ss_pred             ECCCCCCCCCCCCCCCCceeee-------cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290          123 NLSRFSGRGLDDNAITPSALYQ-------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (763)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  195 (763)
                      .+......       ..+..+.       .+...+..++++|..+++++.....+.|.++|....-             .
T Consensus       148 ~~~g~~~~-------~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~-------------~  207 (255)
T 3qqz_A          148 KVNGLLSS-------NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV-------------I  207 (255)
T ss_dssp             EEESTTCS-------SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-------------E
T ss_pred             EEcccccC-------CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE-------------E
Confidence            55410000       0111111       1234578999999888888888888899999966431             2


Q ss_pred             EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004290          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (763)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~  246 (763)
                      ..+.+..+...    ........-.|+|.++ ++ |++.+.-+.++.|...
T Consensus       208 ~~~~L~~g~~~----l~~~~~qpEGia~d~~-G~-lyIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          208 GEMSLTKGSRG----LSHNIKQAEGVAMDAS-GN-IYIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             EEEECSTTGGG----CSSCCCSEEEEEECTT-CC-EEEEETTTEEEEEEC-
T ss_pred             EEEEcCCccCC----cccccCCCCeeEECCC-CC-EEEEcCCceEEEEEec
Confidence            23333322100    0011234568999997 56 4445777777776543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.70  E-value=0.12  Score=54.86  Aligned_cols=158  Identities=10%  Similarity=0.075  Sum_probs=92.0

Q ss_pred             ceEEEEEee-CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC---
Q 004290           95 NVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---  170 (763)
Q Consensus        95 ~V~~v~~~p-~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg---  170 (763)
                      ....++|+| +  +..|..+...+.|+.+|+....           +..+.........|+|++++..++++...++   
T Consensus       138 ~P~~lavdp~~--~g~Lyv~d~~~~I~~id~~~~~-----------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~  204 (430)
T 3tc9_A          138 GAVWLSFDPKN--HNHLYLVGEQHPTRLIDFEKEY-----------VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDR  204 (430)
T ss_dssp             CCCEEEEETTE--EEEEEEEEBTEEEEEEETTTTE-----------EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTS
T ss_pred             CCCEEEECCCC--CCeEEEEeCCCcEEEEECCCCE-----------EEEEecCCCCcceEEEeCCCCEEEEEeCCCCccc
Confidence            457899997 4  2445555444889999987521           3334345566889999994432555544322   


Q ss_pred             -cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          171 -TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       171 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                       .+.+++. .+...         ....+.               .......++++|+++.++++-..++.|..||.....
T Consensus       205 ~~v~~~~~-~g~~~---------~~~~l~---------------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~  259 (430)
T 3tc9_A          205 PNNYILTR-ESGFK---------VITELT---------------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE  259 (430)
T ss_dssp             EEEEEEEG-GGTSC---------SEEEEE---------------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred             ceEEEEeC-CCcee---------eeeeec---------------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence             2333332 22210         000110               012346788999657777777778899999987542


Q ss_pred             CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q 004290          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH  310 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~  310 (763)
                      ...             .+   .   .+. ...-..++|+|+|++|+.+. ..+.|..++.+.
T Consensus       260 ~~~-------------~~---~---~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          260 TTP-------------LF---T---IQD-SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEE-------------EE---E---CSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEE-------------EE---E---cCC-CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            100             00   0   000 11367899999999666554 578999988764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.51  E-value=6.1  Score=47.38  Aligned_cols=77  Identities=18%  Similarity=0.150  Sum_probs=54.3

Q ss_pred             cCceEEEEeCCC------CCEEEEEeC-CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004290           50 QGCVNAISWNSK------GSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (763)
Q Consensus        50 ~~~V~~l~fsp~------g~~Lasgs~-D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw  122 (763)
                      .+.|.|+++.|.      +.++|.|.. |++|+|+++.+.+.+....-+-...+.++.+..-....+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999999863      369999996 9999999999877665432222234555555533214678899999998777


Q ss_pred             ECCC
Q 004290          123 NLSR  126 (763)
Q Consensus       123 d~~~  126 (763)
                      .+..
T Consensus       633 ~~d~  636 (1158)
T 3ei3_A          633 GLNI  636 (1158)
T ss_dssp             EECT
T ss_pred             EEcC
Confidence            6654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.47  E-value=0.17  Score=52.33  Aligned_cols=123  Identities=14%  Similarity=0.128  Sum_probs=80.4

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe------------EEEEEccC-----CCCceEEEEEeeCC-CCcEEEEE
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK------------LLHSIETG-----HSANVFCTKFVPET-SDELVVSG  113 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~------------~~~~~~~~-----h~~~V~~v~~~p~~-~~~~l~s~  113 (763)
                      .|..+..||+|++||..+. ..|.|-.+..+.            ..+.+.-+     ...+|..+.|+|-+ ++..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            5788999999999998866 588888876321            12233212     24679999999964 14689999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe--CCCcEEEEE
Q 004290          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHD  176 (763)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s--~dg~i~iwd  176 (763)
                      ..|+.|++||+.........-+.......+......|.+++|.+ ++-.|+..+  +.|.|+-.-
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEEES
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEEEC
Confidence            99999999999963322110000000111222336788999988 666666655  777776553

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.28  E-value=1.4  Score=43.90  Aligned_cols=95  Identities=8%  Similarity=0.133  Sum_probs=50.1

Q ss_pred             cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCC----CcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004290           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D----~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p  103 (763)
                      ..+..++....++..+..+........++.+  ++.+++.|+.+    ..+.+||+.+.+-...-.......-.++... 
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-  100 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-  100 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-
T ss_pred             ceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-
Confidence            3445555555555444443322222222332  56777788754    5688999988764332211111111122222 


Q ss_pred             CCCCcEEEEEeCC------CcEEEEECCCC
Q 004290          104 ETSDELVVSGAGD------AEVRLFNLSRF  127 (763)
Q Consensus       104 ~~~~~~l~s~s~d------g~I~iwd~~~~  127 (763)
                      +  +.+++.|+.+      ..+.+||+.+.
T Consensus       101 ~--~~iyv~GG~~~~~~~~~~~~~~d~~~~  128 (306)
T 3ii7_A          101 E--GKIYTSGGSEVGNSALYLFECYDTRTE  128 (306)
T ss_dssp             T--TEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred             C--CEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence            4  5788888765      45888998864

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.24  E-value=0.85  Score=46.59  Aligned_cols=194  Identities=11%  Similarity=0.095  Sum_probs=104.4

Q ss_pred             ceEEEEeCCCCCEEEEEe------------CCCcEEEEeCCC--CeEE-EEEccC-----CCCceEEEEEeeCCCCc--E
Q 004290           52 CVNAISWNSKGSLLISGS------------DDTHINVWSYSS--RKLL-HSIETG-----HSANVFCTKFVPETSDE--L  109 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs------------~D~~v~iWd~~~--~~~~-~~~~~~-----h~~~V~~v~~~p~~~~~--~  109 (763)
                      ....+...|+|..+++++            .+|.|.++|+.+  ++.. ..+ .+     .......+.+.++.++.  +
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~-~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI-IGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEE-ECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEc-cCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            456677888886655542            689999999873  2221 122 22     23577889988742132  4


Q ss_pred             EEEEeC--CCcEEEEECCCCCCCCCCCCCCCCceeeecc-cCceeEEEEecCCCCEEEEEeC-----------------C
Q 004290          110 VVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASE-----------------D  169 (763)
Q Consensus       110 l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~s~s~-----------------d  169 (763)
                      +++-..  +.+|.+|++......      ...+..+.+. -...+.+++.+ ++.+.++...                 .
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~------~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~  202 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKS------LLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAW  202 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTE------EEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred             EEEECCCCCCeEEEEEEECCCCE------EEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCc
Confidence            444333  567889888753221      1223333322 24578899988 4555555431                 1


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      |.|..+|.  ++           +. .+.              ......+.++|+|++..++++-+..+.|..|++....
T Consensus       203 g~vyr~d~--~~-----------~~-~~~--------------~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g  254 (355)
T 3sre_A          203 SFVTYYSP--ND-----------VR-VVA--------------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  254 (355)
T ss_dssp             EEEEEECT--TC-----------CE-EEE--------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             cEEEEEEC--Ce-----------EE-Eee--------------cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC
Confidence            23333332  11           00 010              1123468999999843444455567899999987321


Q ss_pred             CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCC
Q 004290          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSG  300 (763)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s~d  300 (763)
                      .+..          .+.+   .+      ....-.+++.+ +|++.+++..+
T Consensus       255 ~l~~----------~~~~---~~------~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          255 TLTP----------LRVL---SF------DTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             CEEE----------EEEE---EC------SSEEEEEEECTTTCCEEEEEESC
T ss_pred             cEec----------CEEE---eC------CCCCceEEEeCCCCcEEEEecCC
Confidence            1110          0111   01      11367788888 58866655533

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.21  E-value=0.67  Score=49.59  Aligned_cols=173  Identities=13%  Similarity=0.116  Sum_probs=98.0

Q ss_pred             eEEEEeCCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEccC--CCCceEEEEE-------eeCCCCcEEEEEeCCC-c--
Q 004290           53 VNAISWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKF-------VPETSDELVVSGAGDA-E--  118 (763)
Q Consensus        53 V~~l~fsp~--g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~--h~~~V~~v~~-------~p~~~~~~l~s~s~dg-~--  118 (763)
                      ...|+|.|.  ++++++-...+.|++.|++++.....+..+  .......++|       +++  +..|+.+...+ .  
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~--G~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADE--AEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCT--TCEEEEEECCCTTGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCC--CCEEEEEeCCCCCcc
Confidence            568999983  445555555578999999887765544221  1235899999       998  67555555543 2  


Q ss_pred             ----EEEEECCCCCCCCCCCCCCCC-ceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECC-------CCCCCCCC
Q 004290          119 ----VRLFNLSRFSGRGLDDNAITP-SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR-------QGSSCPPA  186 (763)
Q Consensus       119 ----I~iwd~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~-------~~~~~~~~  186 (763)
                          |.+.+... .+...    ... ...+.. ......++++|+++.++++-..++.|..+|+.       ++..-...
T Consensus       219 ~~~~V~~i~r~~-~G~~~----~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          219 ESPSVYIIKRNA-DGTFD----DRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             GEEEEEEEECCT-TSCCS----TTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             cCceEEEEecCC-CCcee----ecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence                55665332 11110    000 012222 23456788999777888888888999999987       44320000


Q ss_pred             CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcE-EEEEeCCCcEEEEeCC
Q 004290          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL-LLVGGSDAFARLYDRR  246 (763)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~-l~sgs~Dg~i~iwd~~  246 (763)
                      ..........+...            ......+.|+|+|+ +++ +++=+....|+.++..
T Consensus       293 ~~~~~g~~~~l~~~------------~~~~~p~~ia~~p~-G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          293 VKNNPNTFKQLFTI------------ADPSWEFQIFIHPT-GKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             GGGCTTTEEEEEEC------------SSSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEE
T ss_pred             ccccccccceeEec------------CCCCCceEEEEcCC-CCEEEEEeCCCCEEEEEecC
Confidence            00000000111111            11234578999998 564 4444566788886654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.19  E-value=1.1  Score=44.69  Aligned_cols=107  Identities=10%  Similarity=0.070  Sum_probs=54.7

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC-----cEEEEECCCCCCC
Q 004290           61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-----EVRLFNLSRFSGR  130 (763)
Q Consensus        61 ~g~~Lasgs~D-----~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg-----~I~iwd~~~~~~~  130 (763)
                      ++.+++.|+.+     ..+.+||..+.+-...-.......-.++... +  +.+++.|+.++     .+.+||+.+... 
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~~~W-  136 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-N--GLLYAVGGFDGSTGLSSVEAYNIKSNEW-  136 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEEEEECSSCEEEEEEEEETTTTEE-
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-C--CEEEEEcCCCCCccCceEEEEeCCCCeE-
Confidence            57777777754     3588999988764332111111111122222 4  57888887653     477888875332 


Q ss_pred             CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-------CcEEEEECCCCC
Q 004290          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-------GTLRQHDFRQGS  181 (763)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-------g~i~iwd~~~~~  181 (763)
                             ..+..+..... -.+++..  ++.+++.|+.+       ..+.+||+.+.+
T Consensus       137 -------~~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~  184 (302)
T 2xn4_A          137 -------FHVAPMNTRRS-SVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE  184 (302)
T ss_dssp             -------EEECCCSSCCB-SCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred             -------eecCCCCCccc-CceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence                   11222211111 1222222  44666666643       347788876653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.82  E-value=0.66  Score=49.65  Aligned_cols=176  Identities=12%  Similarity=0.078  Sum_probs=94.0

Q ss_pred             ceEEEEEee-CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeec----ccCceeEEEE-------ecCCCCE
Q 004290           95 NVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC----HTRRVKKLAV-------EVGNPHV  162 (763)
Q Consensus        95 ~V~~v~~~p-~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~-------sp~~~~~  162 (763)
                      ....|+|.| +. ++++++....+.|++.|+....           +..+..    .......|+|       ++++..+
T Consensus       140 ~p~~la~dp~~~-~~Lyv~~~~~~~i~~ID~~~~~-----------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~l  207 (496)
T 3kya_A          140 DNGRLAFDPLNK-DHLYICYDGHKAIQLIDLKNRM-----------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYM  207 (496)
T ss_dssp             SEEEEEEETTEE-EEEEEEEETEEEEEEEETTTTE-----------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEE
T ss_pred             CCCEEEEccCCC-CEEEEEECCCCeEEEEECCCCE-----------EEEEEccCccccCCCcEEEEeecccccCCCCCEE
Confidence            357899998 32 4566665555778888887532           333321    2235899999       9854335


Q ss_pred             EEEEeCCCc------EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC
Q 004290          163 VWSASEDGT------LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS  236 (763)
Q Consensus       163 l~s~s~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~  236 (763)
                      +++-..++.      |.+++..........  .  . ...+..               ......++++|+++.++++-..
T Consensus       208 yvad~~~~~~~~~~~V~~i~r~~~G~~~~~--~--~-~~~v~~---------------~~~p~giavdp~~g~LYvtd~~  267 (496)
T 3kya_A          208 IVAIDYDGKGDESPSVYIIKRNADGTFDDR--S--D-IQLIAA---------------YKQCNGATIHPINGELYFNSYE  267 (496)
T ss_dssp             EEEECCCTTGGGEEEEEEEECCTTSCCSTT--S--C-EEEEEE---------------ESCCCCEEECTTTCCEEEEETT
T ss_pred             EEEeCCCCCcccCceEEEEecCCCCceeec--c--c-ceeecc---------------CCCceEEEEcCCCCeEEEEECC
Confidence            544443322      666663321100000  0  0 001100               1123577889976777888888


Q ss_pred             CCcEEEEeCC-------CCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 004290          237 DAFARLYDRR-------MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDV  308 (763)
Q Consensus       237 Dg~i~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~  308 (763)
                      ++.|..+|+.       ++..-..... ..+. ....+     ...+. ...-..|+|+|+|++|+.+. ..+.|+.++.
T Consensus       268 ~g~V~r~d~~~~~~~~~tg~~~tp~~~-~~~g-~~~~l-----~~~~~-~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          268 KGQVFRLDLVDYFKTIKNGGSWDPIVK-NNPN-TFKQL-----FTIAD-PSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TTEEEEECHHHHHHHHHTTCCCCCBGG-GCTT-TEEEE-----EECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEecccccccccCceeeccccc-cccc-cccee-----EecCC-CCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            8999999987       4432000000 0000 00000     00011 11357899999999666554 5788988776


Q ss_pred             CC
Q 004290          309 NH  310 (763)
Q Consensus       309 ~~  310 (763)
                      ..
T Consensus       340 dg  341 (496)
T 3kya_A          340 DE  341 (496)
T ss_dssp             ET
T ss_pred             CC
Confidence            54

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.79  E-value=1.3  Score=44.12  Aligned_cols=136  Identities=13%  Similarity=0.126  Sum_probs=66.2

Q ss_pred             cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCC-----CcEEEEeCCCCe---EEE--EEccCCCCceE
Q 004290           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD-----THINVWSYSSRK---LLH--SIETGHSANVF   97 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D-----~~v~iWd~~~~~---~~~--~~~~~h~~~V~   97 (763)
                      ..+..++....++..+..+........++.  -++++++.|+.+     ..+.+||+.+.+   -..  .+. ...... 
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p-~~r~~~-  106 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN-VRRGLA-  106 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS-SCCBSC-
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC-CCccce-
Confidence            344455544444444433332222222222  256777777754     468899988765   222  221 111111 


Q ss_pred             EEEEeeCCCCcEEEEEeCC-----CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC---
Q 004290           98 CTKFVPETSDELVVSGAGD-----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---  169 (763)
Q Consensus        98 ~v~~~p~~~~~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d---  169 (763)
                      ++... +  +.+++.|+.+     ..+.+||+.+...        ..+..+..... -.+++..  ++.+++.|+.+   
T Consensus       107 ~~~~~-~--~~lyv~GG~~~~~~~~~~~~~d~~~~~W--------~~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~  172 (301)
T 2vpj_A          107 GATTL-G--DMIYVSGGFDGSRRHTSMERYDPNIDQW--------SMLGDMQTARE-GAGLVVA--SGVIYCLGGYDGLN  172 (301)
T ss_dssp             EEEEE-T--TEEEEECCBCSSCBCCEEEEEETTTTEE--------EEEEECSSCCB-SCEEEEE--TTEEEEECCBCSSC
T ss_pred             eEEEE-C--CEEEEEcccCCCcccceEEEEcCCCCeE--------EECCCCCCCcc-cceEEEE--CCEEEEECCCCCCc
Confidence            22222 4  5777777654     3588888876331        11222221111 1222222  45677777654   


Q ss_pred             --CcEEEEECCCCC
Q 004290          170 --GTLRQHDFRQGS  181 (763)
Q Consensus       170 --g~i~iwd~~~~~  181 (763)
                        ..+.+||+.+.+
T Consensus       173 ~~~~~~~~d~~~~~  186 (301)
T 2vpj_A          173 ILNSVEKYDPHTGH  186 (301)
T ss_dssp             BCCCEEEEETTTTE
T ss_pred             ccceEEEEeCCCCc
Confidence              357778876653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.59  E-value=1.7  Score=44.91  Aligned_cols=168  Identities=13%  Similarity=0.069  Sum_probs=91.6

Q ss_pred             CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecc----cCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH----TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      +..++.+- ++.||.-++....          ..+.+..-    -..|..+..+| ++.+++..+ +..|.|-.+..+..
T Consensus        32 ~t~i~~a~-~n~iR~~~i~~~~----------~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~   98 (452)
T 3pbp_A           32 GTRIVFIQ-DNIIRWYNVLTDS----------LYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYS   98 (452)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCS----------SCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCS
T ss_pred             CCEEEEEE-CCEEEEEECCCCC----------cceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccc
Confidence            44455443 4677777776421          12333221    22578899999 678887765 46899999874432


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC--CcEEEEEeCCCcEEEEeCCCCCCCcc-cCCCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYDRRMLPPLTS-CQKRMS  259 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~--~~~l~sgs~Dg~i~iwd~~~~~~~~~-~~~~~~  259 (763)
                      ...........+...+.+..-       ......+|..+.|+|-+  +..|++-..|+.||+||+........ +.    
T Consensus        99 ~~~~~~~~~~~q~~ty~l~~~-------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~----  167 (452)
T 3pbp_A           99 NVEDVSIQDAFQIFHYSIDEE-------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLN----  167 (452)
T ss_dssp             CCCCHHHHHTTEEEEEEGGGC-------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEES----
T ss_pred             cCcccccccccceeEEEcCCc-------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchh----
Confidence            211000001112222222110       00124679999999964  34899999999999999986321111 10    


Q ss_pred             CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCeEEEE
Q 004290          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLM  306 (763)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s--~d~~i~iw  306 (763)
                        .....|     ...... ..|.+++|.+++-.|.+.+  .+|-|+-.
T Consensus       168 --k~~~~f-----g~d~~~-~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          168 --KPNNSF-----GLDARV-NDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             --CCCSEE-----ESCSSC-CCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             --cccccc-----CCCccc-ceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence              000011     001111 2589999999776666644  55655544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.11  E-value=1.8  Score=40.48  Aligned_cols=148  Identities=12%  Similarity=-0.031  Sum_probs=75.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCe------EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290           61 KGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  134 (763)
Q Consensus        61 ~g~~Lasgs~D~~v~iWd~~~~~------~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~  134 (763)
                      ...+|+....| +|+.=....+.      ...++-.+-=..+..++|+|+  +.+.+.  .+|.+.-.+..+......  
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~--G~LYaV--~~G~Ly~~~~~t~~~~~W--   75 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPG--GELYGV--LNDKIYKGTPPTHDNDNW--   75 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTT--SCEEEE--ETTEEEEESCCCSTTCCH--
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCC--ccEEEE--eCCeEEEECCCCCCcccc--
Confidence            34567777777 66665554433      222331111246779999997  776666  567665555543211110  


Q ss_pred             CCCCCceeee--cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCC
Q 004290          135 NAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  212 (763)
Q Consensus       135 ~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (763)
                        ......+-  +... -..+.|.| ++.+.++  .||.|+-++-.+....        ..   +.+   +    .....
T Consensus        76 --~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~pP~~~~~--------~W---l~~---a----~~vg~  131 (236)
T 1tl2_A           76 --MGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASPPQSDTD--------NW---IAR---A----TEVGS  131 (236)
T ss_dssp             --HHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESCCCSTTC--------CH---HHH---S----EEEEC
T ss_pred             --cccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCCCcCCCC--------ce---ecc---c----cEecc
Confidence              00000000  1111 37888998 5566655  5699988874332210        00   000   0    00000


Q ss_pred             CCccceEEEEEeCCCCcEEEEEeCCCcEEE
Q 004290          213 KQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (763)
Q Consensus       213 ~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~i  242 (763)
                      ..-..+..|.|.|+ +.+.++.  |+.++-
T Consensus       132 ~gw~~~~~lff~p~-G~Lyav~--dg~lyr  158 (236)
T 1tl2_A          132 GGWSGFKFLFFHPN-GYLYAVH--GQQFYK  158 (236)
T ss_dssp             SSGGGEEEEEECTT-SCEEEEE--TTEEEE
T ss_pred             CCCCceEEEEECCC-ceEEEEe--CCcEEe
Confidence            11246789999997 6666665  777543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=93.96  E-value=6.2  Score=40.20  Aligned_cols=107  Identities=9%  Similarity=0.059  Sum_probs=60.6

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEc--cCCCCceEEEEEeeC---CCCcEEEEEeCC-----Cc
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIE--TGHSANVFCTKFVPE---TSDELVVSGAGD-----AE  118 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~--~~~~~--~~h~~~V~~v~~~p~---~~~~~l~s~s~d-----g~  118 (763)
                      ..-..|+|.|+|+++++ ..++.|++++  .++.  +..+.  .........|+|+|+   + +.++++-...     +.
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~-g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQE-PYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEECTTSSEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCC-CEEEEEEecCCCCCccE
Confidence            35679999999996665 5569999998  4432  22221  112356899999997   3 4555554433     56


Q ss_pred             EEEEECCCCCCCCCCCCCCCC-ceeee---cccCceeEEEEecCCCCEEEEEe
Q 004290          119 VRLFNLSRFSGRGLDDNAITP-SALYQ---CHTRRVKKLAVEVGNPHVVWSAS  167 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~-~~~~~---~h~~~v~~l~~sp~~~~~l~s~s  167 (763)
                      |..++.....  ..   ..+. +..+.   +.......|+|.|+ +.++++.+
T Consensus       107 v~r~~~~~~~--~~---~~~~l~~~~p~~~~~~h~~~~l~~~pd-G~Lyv~~G  153 (352)
T 2ism_A          107 VVRLRHLGER--GV---LDRVVLDGIPARPHGLHSGGRIAFGPD-GMLYVTTG  153 (352)
T ss_dssp             EEEEEECSSC--EE---EEEEEEEEECCCTTCCCCCCCEEECTT-SCEEEECC
T ss_pred             EEEEEeCCCC--cC---ceEEEEEeCCCCCCCCcCCceEEECCC-CCEEEEEC
Confidence            7777776311  00   0011 11122   11123468999994 46666644

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.93  E-value=3.8  Score=40.86  Aligned_cols=111  Identities=9%  Similarity=0.011  Sum_probs=55.7

Q ss_pred             EeCCCCCEEEEEeC-----C------CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC--------C
Q 004290           57 SWNSKGSLLISGSD-----D------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--------A  117 (763)
Q Consensus        57 ~fsp~g~~Lasgs~-----D------~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d--------g  117 (763)
                      ....++++++.|+.     .      ..+.+||..+.+-...-.......-.++... +  +.+++.|+.+        .
T Consensus        41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~  117 (315)
T 4asc_A           41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-L--NSIYVVGGREIKDGERCLD  117 (315)
T ss_dssp             EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-T--TEEEEECCEESSTTCCBCC
T ss_pred             EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-C--CEEEEEeCCcCCCCCcccc
Confidence            33457888888873     1      1277889888764321100011001122222 3  5777777742        4


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC-C-----CcEEEEECCCCC
Q 004290          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-D-----GTLRQHDFRQGS  181 (763)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~-d-----g~i~iwd~~~~~  181 (763)
                      .+.+||+.+....        .+..+..... -.+++..  ++.+++.|+. +     ..+.+||+.+.+
T Consensus       118 ~~~~~d~~~~~W~--------~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A          118 SVMCYDRLSFKWG--------ESDPLPYVVY-GHTVLSH--MDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             CEEEEETTTTEEE--------ECCCCSSCCB-SCEEEEE--TTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             eEEEECCCCCcEe--------ECCCCCCccc-ceeEEEE--CCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            5888998864321        1222211111 1222222  4567777776 2     367788877653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.48  E-value=2.9  Score=50.18  Aligned_cols=212  Identities=10%  Similarity=0.116  Sum_probs=116.6

Q ss_pred             EeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004290           57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA  136 (763)
Q Consensus        57 ~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~  136 (763)
                      -.+|..+.||.=. ..++.|+|+++...++.+ . ...+|.--.|...   +.|+-.+ +..|..|++...         
T Consensus        72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~-~-~~e~VvfWkWis~---~~l~lVT-~~aVyHW~~~~~---------  135 (1630)
T 1xi4_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-T-MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGE---------  135 (1630)
T ss_pred             ccCCCcceEEEec-CCeEEEeehHHhhhhccc-c-cCCCceEEEecCC---CeeEEEc-CCeEEEeccCCC---------
Confidence            3467777777654 579999999998888776 2 3456777777765   4555544 568999999641         


Q ss_pred             CCCceeeecc----cCceeEEEEecCCCCEEEEEe------CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290          137 ITPSALYQCH----TRRVKKLAVEVGNPHVVWSAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (763)
Q Consensus       137 ~~~~~~~~~h----~~~v~~l~~sp~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (763)
                      ..|.+.|..|    ...|..-..+++...++++|-      -.|.+.+|....+...  ...+|..+-   ......   
T Consensus       136 s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ--~iegha~~F---~~~~~~---  207 (1630)
T 1xi4_A          136 SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAASF---AQFKME---  207 (1630)
T ss_pred             CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch--hhhHhHhhh---heeccC---
Confidence            1455555555    345666677774444444442      3477888887665421  111111110   000000   


Q ss_pred             eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC-CCCcccCCCCCCCCcccccccccccCCCCCccceeEE
Q 004290          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (763)
Q Consensus       207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v  285 (763)
                          ...+...+.|.+.-.  .       ..+.++|-++... .....+.     ...+..+.|.    ....+. -.++
T Consensus       208 ----~~~~~~~l~~f~~~~--~-------~g~kLhi~Ei~~~~~~~~~f~-----kk~~~~~~~~----~~~~Df-pv~~  264 (1630)
T 1xi4_A          208 ----GNAEESTLFCFAVRG--Q-------AGGKLHIIEVGTPPTGNQPFP-----KKAVDVFFPP----EAQNDF-PVAM  264 (1630)
T ss_pred             ----CCCCCceEEEEEEec--C-------CCceEEEEecCCCccCCCCCc-----cccccccCCc----ccccCc-ceEE
Confidence                000111122222211  1       1267888888543 1111110     0111112111    122232 4567


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCCccc
Q 004290          286 TFSPNGEEVLLSYSGEHVYLMDVNHAGGRA  315 (763)
Q Consensus       286 ~~spdg~~l~~~s~d~~i~iwd~~~~~~~~  315 (763)
                      ..++.-..+..-+.-|.|++||+.++....
T Consensus       265 ~vs~k~g~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          265 QISEKHDVVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             EeccccCEEEEEecCceEEEEecccchhhh
Confidence            788888889999999999999999976443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.44  E-value=2.2  Score=43.55  Aligned_cols=29  Identities=14%  Similarity=0.318  Sum_probs=25.1

Q ss_pred             eeEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 004290          282 LTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  310 (763)
Q Consensus       282 i~~v~~spdg~~l~~~s~-d~~i~iwd~~~  310 (763)
                      -+.++|+||+++|+.+.. .+.|+.|++..
T Consensus       223 pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          223 ANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            688999999998887765 78999999874

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.41  E-value=2.8  Score=41.78  Aligned_cols=106  Identities=11%  Similarity=0.060  Sum_probs=54.3

Q ss_pred             CCCEEEEEeC----C-----CcEEEEeCCCCeEEEEEc-cCCCCceEEEEEeeCCCCcEEEEEeCC-----CcEEEEECC
Q 004290           61 KGSLLISGSD----D-----THINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLS  125 (763)
Q Consensus        61 ~g~~Lasgs~----D-----~~v~iWd~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~l~s~s~d-----g~I~iwd~~  125 (763)
                      ++.+++.|+.    +     ..+.+||+.+.+-...-. ....... ++... +  +.+++.|+.+     ..+.+||+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~  145 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-GVGVI-D--GHIYAVGGSHGCIHHNSVERYEPE  145 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-EEEEE-T--TEEEEECCEETTEECCCEEEEETT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-EEEEE-C--CEEEEEcCCCCCcccccEEEECCC
Confidence            5677777765    2     468899998875432210 1111111 22222 4  5777777643     358888887


Q ss_pred             CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-----CcEEEEECCCCC
Q 004290          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS  181 (763)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-----g~i~iwd~~~~~  181 (763)
                      +.....        +..+...... .+++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       146 ~~~W~~--------~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  195 (308)
T 1zgk_A          146 RDEWHL--------VAPMLTRRIG-VGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE  195 (308)
T ss_dssp             TTEEEE--------CCCCSSCCBS-CEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             CCeEeE--------CCCCCccccc-eEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence            643211        1112111111 122222  44677777654     357778876653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=92.43  E-value=3.5  Score=40.84  Aligned_cols=107  Identities=16%  Similarity=0.127  Sum_probs=55.5

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC-------CcEEEEECCCCC
Q 004290           61 KGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------AEVRLFNLSRFS  128 (763)
Q Consensus        61 ~g~~Lasgs~D~-----~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d-------g~I~iwd~~~~~  128 (763)
                      ++++++.|+.++     .+.+||+.+.+-...-.......-.++... +  +.+++.|+.+       ..+.+||+.+..
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~yd~~~~~  184 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-G--GLLYAVGGYDVASRQCLSTVECYNATTNE  184 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-C--CEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence            577777887653     477889887764332111111111122222 3  5677777643       358889987643


Q ss_pred             CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-----CcEEEEECCCCC
Q 004290          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS  181 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-----g~i~iwd~~~~~  181 (763)
                      ..        .+..+...... .+++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       185 W~--------~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          185 WT--------YIAEMSTRRSG-AGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             EE--------EECCCSSCCBS-CEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             EE--------ECCCCcccccc-ccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            21        12112111111 223222  45777777764     367888877653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=92.22  E-value=3.2  Score=41.08  Aligned_cols=105  Identities=14%  Similarity=0.115  Sum_probs=56.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEE--EEccCCCCceEEEEEeeCCCCcEEEEEeCC-----CcEEEEECCCCC
Q 004290           61 KGSLLISGSDD-----THINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRFS  128 (763)
Q Consensus        61 ~g~~Lasgs~D-----~~v~iWd~~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d-----g~I~iwd~~~~~  128 (763)
                      ++++++.|+.+     ..+.+||+.+.+-..  .+... ... .++... +  +.+++.|+.+     ..+.+||+.+..
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~~~  186 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA-REG-AGLVVA-S--GVIYCLGGYDGLNILNSVEKYDPHTGH  186 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC-CBS-CEEEEE-T--TEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC-ccc-ceEEEE-C--CEEEEECCCCCCcccceEEEEeCCCCc
Confidence            57777777654     358889988775332  22111 111 122222 4  5777877754     458889987643


Q ss_pred             CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-----CcEEEEECCCCC
Q 004290          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS  181 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-----g~i~iwd~~~~~  181 (763)
                      .        ..+..+..... -.+++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       187 W--------~~~~~~p~~r~-~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          187 W--------TNVTPMATKRS-GAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             E--------EEECCCSSCCB-SCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             E--------EeCCCCCcccc-cceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            2        11211211111 1122222  45677777764     468888887654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.21  E-value=3.2  Score=41.25  Aligned_cols=107  Identities=7%  Similarity=0.054  Sum_probs=55.7

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---------CCcEEEEECC
Q 004290           61 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---------DAEVRLFNLS  125 (763)
Q Consensus        61 ~g~~Lasgs~D------~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---------dg~I~iwd~~  125 (763)
                      ++++++.|+.+      ..+.+||+.+.+-...-.......-.++.. -+  +.+++.|+.         -..+.+||+.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~~~~yd~~  177 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-AN--GLIYVCGGSLGNNVSGRVLNSCEVYDPA  177 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ET--TEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-EC--CEEEEECCCCCCCCcccccceEEEeCCC
Confidence            57777888765      468899998876433210011111112222 24  567777764         3458899988


Q ss_pred             CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-----CcEEEEECCCCC
Q 004290          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS  181 (763)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-----g~i~iwd~~~~~  181 (763)
                      +...        ..+..+.... .-.+++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       178 ~~~W--------~~~~~~p~~r-~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          178 TETW--------TELCPMIEAR-KNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             TTEE--------EEECCCSSCC-BSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             CCeE--------EECCCccchh-hcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            6432        1122221111 11222222  44677777654     357788877653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=91.30  E-value=14  Score=37.58  Aligned_cols=111  Identities=12%  Similarity=0.012  Sum_probs=61.3

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEc--cCCCCceEEEEEeeC---CCCcEEEEEeC---C----
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIE--TGHSANVFCTKFVPE---TSDELVVSGAG---D----  116 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~~~~--~~h~~~V~~v~~~p~---~~~~~l~s~s~---d----  116 (763)
                      -.....|+|.|+|+++++ ..++.|+++|. +++ .+..+.  .........|+|+|+   . +.++++-+.   +    
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKK-SWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEEECGGGCEE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcC-CEEEEEEeccCCCCCcc
Confidence            345789999999986665 55699999973 454 222221  112356889999996   3 455555442   3    


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCc-eeee-cccCceeEEEEecCCCCEEEEEe
Q 004290          117 AEVRLFNLSRFSGRGLDDNAITPS-ALYQ-CHTRRVKKLAVEVGNPHVVWSAS  167 (763)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~-~~~~-~h~~~v~~l~~sp~~~~~l~s~s  167 (763)
                      ..|..|+.........   ..+.+ ..+. ........|+|.| ++.++++.+
T Consensus       105 ~~v~r~~~~~~~~~~~---~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G  153 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLK---EVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTG  153 (354)
T ss_dssp             EEEEEEEECSSSCCEE---EEEEEEEEEECCSSCCCCCEEECT-TSCEEEECC
T ss_pred             eEEEEEEECCCCcCcC---ccEEEEEcCCCCCCcCCceEEECC-CCcEEEEEC
Confidence            5677777654211000   00111 1121 1112346799999 456666644

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=90.59  E-value=14  Score=36.55  Aligned_cols=110  Identities=9%  Similarity=0.027  Sum_probs=54.1

Q ss_pred             eCCCCCEEEEEeC----CC-------cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC-------CcE
Q 004290           58 WNSKGSLLISGSD----DT-------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------AEV  119 (763)
Q Consensus        58 fsp~g~~Lasgs~----D~-------~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d-------g~I  119 (763)
                      ...++.+++.|+.    ++       .+.++|..+.+-...-.......-.++... +  +.+++.|+.+       ..+
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~  129 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-D--DKIYVVAGKDLQTEASLDSV  129 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-T--TEEEEEEEEBTTTCCEEEEE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-C--CEEEEEcCccCCCCcccceE
Confidence            3457888888873    12       177889887754322100111111122222 3  5778888764       247


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC------CCcEEEEECCCCC
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQGS  181 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~------dg~i~iwd~~~~~  181 (763)
                      .+||+.+....        .+..+..... -.+++. . ++.+++.|+.      -..+.+||+.+.+
T Consensus       130 ~~yd~~~~~W~--------~~~~~p~~r~-~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          130 LCYDPVAAKWS--------EVKNLPIKVY-GHNVIS-H-NGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             EEEETTTTEEE--------EECCCSSCEE-SCEEEE-E-TTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             EEEeCCCCCEe--------ECCCCCCccc-ccEEEE-E-CCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            78888763321        1111111111 112222 2 4566667664      2357888877653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=89.95  E-value=5.6  Score=39.59  Aligned_cols=107  Identities=12%  Similarity=0.078  Sum_probs=55.6

Q ss_pred             CCCEEEEEeCC--------CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-C-----CcEEEEECCC
Q 004290           61 KGSLLISGSDD--------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-D-----AEVRLFNLSR  126 (763)
Q Consensus        61 ~g~~Lasgs~D--------~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-d-----g~I~iwd~~~  126 (763)
                      ++++++.|+.+        ..+.+||+.+.+-...-.......-.++.. .+  +.+++.|+. +     ..+.+||+.+
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HM--DLVYVIGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ET--TEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-EC--CEEEEEeCCCCCCcccceEEEEeCCC
Confidence            56777777742        458899998875332110011111112222 33  577777776 2     4588999886


Q ss_pred             CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-----cEEEEECCCCC
Q 004290          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGS  181 (763)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-----~i~iwd~~~~~  181 (763)
                      ....        .+..+..... -.+++..  ++.+++.|+.++     .+.+||+.+.+
T Consensus       175 ~~W~--------~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          175 FEWK--------ELAPMQTARS-LFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TEEE--------ECCCCSSCCB-SCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CeEE--------ECCCCCCchh-ceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            4321        1222211111 1222222  457777887654     47778877653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=89.89  E-value=9.8  Score=38.50  Aligned_cols=78  Identities=12%  Similarity=0.086  Sum_probs=47.7

Q ss_pred             CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce----eeecccCceeEEEEecC---CCCEEE
Q 004290           92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA----LYQCHTRRVKKLAVEVG---NPHVVW  164 (763)
Q Consensus        92 h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~----~~~~h~~~v~~l~~sp~---~~~~l~  164 (763)
                      .-.....|+|.|+  +.++++--..|.|++++...+..        ..+.    .+.........|+++|+   ++.+.+
T Consensus        30 gL~~P~~ia~~pd--G~llVter~~G~I~~v~~~~g~~--------~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv   99 (347)
T 3das_A           30 GLNSPWGLAPLPG--GDLLVSSRDEATITRVDAKTGRK--------TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA   99 (347)
T ss_dssp             CCSSEEEEEECTT--SCEEEEETTTCEEEEECTTTCCE--------EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred             CCCCceEEEEcCC--CcEEEEEecCCEEEEEECCCCcE--------eeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence            3456789999999  77777765589999987653221        1111    11223556889999984   444444


Q ss_pred             EEe--CCCcEEEEECCC
Q 004290          165 SAS--EDGTLRQHDFRQ  179 (763)
Q Consensus       165 s~s--~dg~i~iwd~~~  179 (763)
                      +-+  .+..|.-|.+..
T Consensus       100 ~yt~~~~~~v~R~~~~~  116 (347)
T 3das_A          100 YFTSASDNRIVRMLYDE  116 (347)
T ss_dssp             EEECSSSEEEEEEEBCT
T ss_pred             EEecCCCCEEEEEEeCC
Confidence            322  345566666654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=89.67  E-value=7.6  Score=39.18  Aligned_cols=155  Identities=8%  Similarity=0.107  Sum_probs=87.6

Q ss_pred             CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC---CCC---EEEEEeC---CCcEEEEEC
Q 004290          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPH---VVWSASE---DGTLRQHDF  177 (763)
Q Consensus       107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~---~~~---~l~s~s~---dg~i~iwd~  177 (763)
                      ..+++.....+-+.+||+.-           +.++.+..  +.++.+..-|.   ++.   ++++...   +++|.+|++
T Consensus        40 ~s~ii~t~k~~gL~Vydl~G-----------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i  106 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSLDG-----------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI  106 (355)
T ss_dssp             GCEEEEEETTTEEEEEETTS-----------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred             ccEEEEEcCCCCEEEEcCCC-----------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence            35677777788999999952           23555542  56777777661   111   2333333   578999977


Q ss_pred             CCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEE--eCCCCc-EEEEEeCCCcEEEEeCCC---CCCC
Q 004290          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI--SSTRPH-LLLVGGSDAFARLYDRRM---LPPL  251 (763)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~p~~~~-~l~sgs~Dg~i~iwd~~~---~~~~  251 (763)
                      ......             +....... ..+   ......+..+++  +|..+. ++++...+|.+..|++..   ++.-
T Consensus       107 Dp~~~~-------------l~~i~~~~-~pv---~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~  169 (355)
T 3amr_A          107 DGKNGT-------------LQSMTDPD-HPI---ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS  169 (355)
T ss_dssp             CTTTCC-------------EEECSCTT-SCE---ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE
T ss_pred             CCCCCc-------------eeeccccc-cCc---CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc
Confidence            422110             11100000 000   011144566777  675443 688888899999999843   2110


Q ss_pred             cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004290          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (763)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~  309 (763)
                      .         +.++.|..         ...+-.++..+....|+.+-.+.-|..++..
T Consensus       170 ~---------~lVR~f~l---------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          170 G---------KKVRAFKM---------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             E---------EEEEEEEC---------SSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             c---------eEEEEecC---------CCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence            0         11222211         1148889999998999999998665555543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=89.58  E-value=6.2  Score=39.14  Aligned_cols=106  Identities=10%  Similarity=0.077  Sum_probs=56.0

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEEEEc-cCCCCceEEEEEeeCCCCcEEEEEeCC-----CcEEEEECCCCCC
Q 004290           61 KGSLLISGSDD-----THINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRFSG  129 (763)
Q Consensus        61 ~g~~Lasgs~D-----~~v~iWd~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~l~s~s~d-----g~I~iwd~~~~~~  129 (763)
                      ++++++.|+.+     ..+.+||+.+.+-...-. ....... ++... +  +.+++.|+.+     ..+.+||+.+...
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W  196 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVL-N--RLLYAVGGFDGTNRLNSAECYYPERNEW  196 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-T--TEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEE-C--CEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence            57777777643     368889998775432210 1111111 22222 4  5777777764     4588899876432


Q ss_pred             CCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-----CcEEEEECCCCC
Q 004290          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS  181 (763)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-----g~i~iwd~~~~~  181 (763)
                      ..        +..+..... -.+++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       197 ~~--------~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          197 RM--------ITAMNTIRS-GAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             EE--------CCCCSSCCB-SCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ee--------CCCCCCccc-cceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            11        111211111 1222222  45677777764     458888887653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=88.42  E-value=20  Score=37.85  Aligned_cols=68  Identities=9%  Similarity=0.007  Sum_probs=42.2

Q ss_pred             CCCEEEEecCCCcEEEEEcCc-Cc-EE---EEEecCCcceEEEEeeCCCC-eEEEEeCCCcEE------EEcCCCCCCcc
Q 004290          638 RGDYIASGSDDGRWFIWEKQT-GR-LI---KMLLGDEAVVNCVQCHPFDC-VVATSGIDNTIK------IWTPSASVPSI  705 (763)
Q Consensus       638 d~~~l~sgs~Dg~i~iWd~~t-g~-~~---~~l~gH~~~V~~v~~sp~~~-~laS~s~D~~Ir------vW~~~~~~~~~  705 (763)
                      .|++++..-..+.|....++. |. ..   ..+..-..++..|++.||+. ++++.+..|.|.      +|.+.....+.
T Consensus       368 ~g~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~~~R~~dv~~gpDG~~Lyv~~d~~G~i~~~~~~~~~~~~~~~~i~  447 (454)
T 1cru_A          368 ENTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNVQKDDGSVTNTLENPGSLI  447 (454)
T ss_dssp             TTEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCEECTTSCEECCCSSTTCEE
T ss_pred             CCcEEEeecCCCEEEEEEECCCCCeeeeeeeeecccCCCceeEEECCCCCEEEEEECCCCCCccCCCceeEeccCCCceE
Confidence            455566555566777666663 33 21   22322246899999999997 777766666654      67775554443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=87.54  E-value=14  Score=36.74  Aligned_cols=107  Identities=8%  Similarity=0.075  Sum_probs=54.2

Q ss_pred             CCCEEEEEeCC-------CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC------CCcEEEEECCCC
Q 004290           61 KGSLLISGSDD-------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG------DAEVRLFNLSRF  127 (763)
Q Consensus        61 ~g~~Lasgs~D-------~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~------dg~I~iwd~~~~  127 (763)
                      ++++++.|+.+       ..+.+||+.+.+-...-.......-.++.. .+  +.+++.|+.      -..+.+||+.+.
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~yd~~~~  185 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HN--GMIYCLGGKTDDKKCTNRVFIYNPKKG  185 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ET--TEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-EC--CEEEEEcCCCCCCCccceEEEEcCCCC
Confidence            57777777754       247888988775433210011000012222 34  567777764      235889998864


Q ss_pred             CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-----cEEEEECCCCC
Q 004290          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGS  181 (763)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-----~i~iwd~~~~~  181 (763)
                      ...        .+..+.... .-.+++..  ++.+++.|+.++     .+.+||+.+.+
T Consensus       186 ~W~--------~~~~~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          186 DWK--------DLAPMKTPR-SMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EEE--------EECCCSSCC-BSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             EEE--------ECCCCCCCc-ccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            321        121121111 11223332  456777776543     46678877654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=87.18  E-value=4.7  Score=40.67  Aligned_cols=109  Identities=14%  Similarity=0.157  Sum_probs=63.2

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeC-CCCcEEEEE-eCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPS  140 (763)
Q Consensus        63 ~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~-~~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (763)
                      .+++.++.||.|.-.|..+|+.+.++......++....-... .++..++.. ..||.|..++..++..          .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~----------~   80 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ----------K   80 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE----------E
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE----------E
Confidence            468889999999999999999999884331233332211100 012333333 5799999998775311          1


Q ss_pred             eeee--c--ccCceeE---EEE-ec---CCCCEEEEEeCCCcEEEEECCCCC
Q 004290          141 ALYQ--C--HTRRVKK---LAV-EV---GNPHVVWSASEDGTLRQHDFRQGS  181 (763)
Q Consensus       141 ~~~~--~--h~~~v~~---l~~-sp---~~~~~l~s~s~dg~i~iwd~~~~~  181 (763)
                      ..+.  .  ...++..   ... .+   ..+..+++++.+|.+...|+++++
T Consensus        81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~  132 (339)
T 2be1_A           81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE  132 (339)
T ss_dssp             EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred             eeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence            1111  0  1111211   000 00   023577899999999999999987

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=85.57  E-value=40  Score=40.38  Aligned_cols=152  Identities=11%  Similarity=0.121  Sum_probs=85.8

Q ss_pred             EEeCCC-CCEEEEEe----------CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290           56 ISWNSK-GSLLISGS----------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (763)
Q Consensus        56 l~fsp~-g~~Lasgs----------~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~  124 (763)
                      +.|..+ ..+|+.|.          ..|.|.++++..++..........++|++++-..   |. |+.|- ..+|++|++
T Consensus       837 v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~---g~-Lla~i-g~~l~vy~l  911 (1158)
T 3ei3_A          837 CKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN---GK-LLASI-NSTVRLYEW  911 (1158)
T ss_dssp             ECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEET---TE-EEEEE-TTEEEEEEE
T ss_pred             EEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC---CE-EEEEc-CCEEEEEEC
Confidence            334433 46888875          3478999998755433322234567888877552   44 44443 478999999


Q ss_pred             CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                      ...+          .+..-..+-..|..+.... .+++++.|..-..|.++-.+...             ..+..+.   
T Consensus       912 ~~~~----------~L~~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~~-------------~~L~~~a---  964 (1158)
T 3ei3_A          912 TTEK----------ELRTECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPME-------------GNFEEIA---  964 (1158)
T ss_dssp             CTTS----------CEEEEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETTT-------------TEEEEEE---
T ss_pred             CCCc----------eEEEEeeccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcCC-------------CeEEEEE---
Confidence            8522          1221111111233222222 24677788777777765443221             0111100   


Q ss_pred             eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                            ......+++++.|-.+  ..++.+..+|.+.++....
T Consensus       965 ------~D~~~~~vta~~~ld~--~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          965 ------RDFNPNWMSAVEILDD--DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             ------ECCSCBCEEEEEEEET--TEEEEEETTSEEEEEEECT
T ss_pred             ------eecccccEEEEEEEcc--CcEEEEcCCCcEEEEecCC
Confidence                  1123457888888764  4788899999999987764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=84.76  E-value=15  Score=34.32  Aligned_cols=117  Identities=11%  Similarity=0.016  Sum_probs=62.0

Q ss_pred             CceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC
Q 004290          148 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (763)
Q Consensus       148 ~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  227 (763)
                      ..+..++|+| ++.+.+.  .+|.++-.+..+.....            ....    ...+-.  ..-....++.|.|+ 
T Consensus        41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~------------W~~s----~t~IG~--~Gw~~F~a~~fD~~-   98 (236)
T 1tl2_A           41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDN------------WMGR----AKKIGN--GGWNQFQFLFFDPN-   98 (236)
T ss_dssp             TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCC------------HHHH----CEEEEC--SCGGGCSEEEECTT-
T ss_pred             ccceeEEECC-CccEEEE--eCCeEEEECCCCCCccc------------cccc----ccEecc--cccccceEEEECCC-
Confidence            4788999999 6666655  67877777654432110            0000    000000  00112468889997 


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEE
Q 004290          228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY  304 (763)
Q Consensus       228 ~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~  304 (763)
                      +.+.++  .||.|.-++..+...-.           ...- ...+...+-.  .+..|.|.|+|.+.++.  |+.++
T Consensus        99 G~LYav--~dG~iyr~~pP~~~~~~-----------Wl~~-a~~vg~~gw~--~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A           99 GYLYAV--SKDKLYKASPPQSDTDN-----------WIAR-ATEVGSGGWS--GFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             SCEEEE--ETTEEEEESCCCSTTCC-----------HHHH-SEEEECSSGG--GEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCEEEe--CCCEEEEeCCCcCCCCc-----------eecc-ccEeccCCCC--ceEEEEECCCceEEEEe--CCcEE
Confidence            666666  66988877764321110           0000 0001111122  38999999999865555  77754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=84.48  E-value=13  Score=37.72  Aligned_cols=53  Identities=11%  Similarity=0.188  Sum_probs=29.1

Q ss_pred             CCCEEEEEeC-C---------CcEEEEeCCCCeEEEEEccC-CCCceEEEEEeeCCCCcEEEEEeCC
Q 004290           61 KGSLLISGSD-D---------THINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELVVSGAGD  116 (763)
Q Consensus        61 ~g~~Lasgs~-D---------~~v~iWd~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~l~s~s~d  116 (763)
                      ++++++.|+. +         ..+.+||+.+.+-...-... ....-.++.. .+  +.+++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~--~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HN--GKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ET--TEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-EC--CEEEEEeCcC
Confidence            5677777765 2         46889999887643321111 1111122222 44  6788888765

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=84.27  E-value=17  Score=36.80  Aligned_cols=55  Identities=7%  Similarity=0.073  Sum_probs=39.4

Q ss_pred             CCCCEEEEecCCCcEEEEEcCcCcEEEE--Ee-cCCcceEEEEeeCCCCeEEEEe-CCC
Q 004290          637 QRGDYIASGSDDGRWFIWEKQTGRLIKM--LL-GDEAVVNCVQCHPFDCVVATSG-IDN  691 (763)
Q Consensus       637 ~d~~~l~sgs~Dg~i~iWd~~tg~~~~~--l~-gH~~~V~~v~~sp~~~~laS~s-~D~  691 (763)
                      .+|+++++.-..+.|...+++.++.+..  +. +-...+..|++.|++.++++.. .+|
T Consensus       287 ~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g  345 (353)
T 2g8s_A          287 WQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG  345 (353)
T ss_dssp             GTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE
T ss_pred             cCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC
Confidence            3678888888888888888887665433  32 2245799999999999777543 344

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=83.86  E-value=19  Score=40.46  Aligned_cols=158  Identities=10%  Similarity=0.073  Sum_probs=81.5

Q ss_pred             CCCCEEEEEeCC----CcEEEEeCCCCeEEEEE-c-----cCCCCceEEEEEee-CCCCcEEEEEeCCC------cEEEE
Q 004290           60 SKGSLLISGSDD----THINVWSYSSRKLLHSI-E-----TGHSANVFCTKFVP-ETSDELVVSGAGDA------EVRLF  122 (763)
Q Consensus        60 p~g~~Lasgs~D----~~v~iWd~~~~~~~~~~-~-----~~h~~~V~~v~~~p-~~~~~~l~s~s~dg------~I~iw  122 (763)
                      .++.+++.|+.+    ..+.+||..+++....- .     ......-.++...+ +  +.+++.|+.++      .+.+|
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~--~~lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN--NQLLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT--TEEEEECCBSSTTCBCCCCEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC--CEEEEEcCCCCCCCccccEEEE
Confidence            467778888753    46888998877543322 1     01111112333343 4  67888887543      47888


Q ss_pred             ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  200 (763)
                      |..+...        ..+..+.... .-.+++... ++.+++.||.++  .+.+||+.+.+-.               .+
T Consensus       474 d~~t~~W--------~~~~~~p~~R-~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~---------------~~  528 (695)
T 2zwa_A          474 DMKTREW--------SMIKSLSHTR-FRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFK---------------DV  528 (695)
T ss_dssp             ETTTTEE--------EECCCCSBCC-BSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEE---------------EC
T ss_pred             eCCCCcE--------EECCCCCCCc-ccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceE---------------Ec
Confidence            8876332        1122222111 112233323 557887887655  6888998775411               00


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC--C-----CcEEEEeCCCCC
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS--D-----AFARLYDRRMLP  249 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~--D-----g~i~iwd~~~~~  249 (763)
                      ....     ..+.......++.+....+.+++.|+.  +     ..+.+||+.+..
T Consensus       529 ~~~g-----~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          529 TPKD-----EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             CCSS-----GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             cCCC-----CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            0000     001111122335556543567777775  2     458899988764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=82.51  E-value=17  Score=36.77  Aligned_cols=126  Identities=12%  Similarity=0.089  Sum_probs=67.9

Q ss_pred             eeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEc---cCCCCceEEEEEeeC--CCCcEEEEEe--
Q 004290           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIE---TGHSANVFCTKFVPE--TSDELVVSGA--  114 (763)
Q Consensus        44 ~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~--~~~~~---~~h~~~V~~v~~~p~--~~~~~l~s~s--  114 (763)
                      ..+-..-..-+.|+|.|+|.+|++--..|.|++++..+++.  +..+.   .........|+|+|+  .++.+.++-+  
T Consensus        25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~  104 (347)
T 3das_A           25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA  104 (347)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred             EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence            33434445678999999999888776589999998766553  22221   123456899999995  1144544432  


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCc-eeee-cccCceeEEEEecCCCCEEEEEeCCC
Q 004290          115 GDAEVRLFNLSRFSGRGLDDNAITPS-ALYQ-CHTRRVKKLAVEVGNPHVVWSASEDG  170 (763)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~-~h~~~v~~l~~sp~~~~~l~s~s~dg  170 (763)
                      .++.|.-|.+.............+.+ ..+. ........|+|.| ++.++++.+..+
T Consensus       105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~  161 (347)
T 3das_A          105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESG  161 (347)
T ss_dssp             SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTT
T ss_pred             CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCC
Confidence            34455555554321100000000111 1111 1112346789998 456666655443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=80.87  E-value=57  Score=33.93  Aligned_cols=209  Identities=14%  Similarity=0.136  Sum_probs=119.1

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEccCCC----CceEEEEEeeCCCCcEEEEEe-------CCCc
Q 004290           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHS----ANVFCTKFVPETSDELVVSGA-------GDAE  118 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~-~~~~~~~~~h~----~~V~~v~~~p~~~~~~l~s~s-------~dg~  118 (763)
                      ..|.--.|-. .+.|+.... ..|.-|+++.. ..++.| .-|.    ..|..-.-+++  .+.++..+       -.|.
T Consensus       106 e~VvfWkWis-~~~l~lVT~-taVyHWsi~~~s~P~kvF-dR~~~L~~~QIInY~~d~~--~kW~~l~GI~~~~~~v~G~  180 (494)
T 1bpo_A          106 DDVTFWKWIS-LNTVALVTD-NAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAK--QKWLLLTGISAQQNRVVGA  180 (494)
T ss_dssp             SCCCEEEEEE-TTEEEEECS-SEEEEEESSSSCCCEEEE-ECCGGGTTCEEEEEEECTT--SSEEEEEEEEEETTEEEEE
T ss_pred             CCceEEEecC-CCeEEEEcC-CeeEEecccCCCCchhhe-ecchhcccceEEEEEECCC--CCeEEEEeecccCCcccce
Confidence            4566666653 345665554 48999999753 344444 3332    34555555555  56655433       2477


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEec--CCCCEEEEEeCC---CcEEEEECCCCCCCCCCCCCCccc
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV--GNPHVVWSASED---GTLRQHDFRQGSSCPPAGSSHQEC  193 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp--~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~  193 (763)
                      +.+|.++.           ...+.+.+|...-..+.+.-  ....+|+.+...   +++.|-++.....-      ....
T Consensus       181 mQLYS~er-----------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~------~~~f  243 (494)
T 1bpo_A          181 MQLYSVDR-----------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG------NQPF  243 (494)
T ss_dssp             EEEEESTT-----------CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTT------CCCC
T ss_pred             EEEeeccc-----------cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccC------CCCc
Confidence            89999986           33677888876655554421  111345444443   78888888553100      0011


Q ss_pred             ceEEEecCCCceeeccCCC-CCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccc
Q 004290          194 RNILLDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (763)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (763)
                      .....+        +...+ .......++..++.. ..++.-+.-|.|.+||+.++..+..-.                 
T Consensus       244 ~kk~vd--------v~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~i~~nr-----------------  297 (494)
T 1bpo_A          244 PKKAVD--------VFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNR-----------------  297 (494)
T ss_dssp             CCEEEE--------CCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEE-----------------
T ss_pred             cceeee--------eeCCcccccCceeEEEecccC-CEEEEEecCceEEEEecccceeeeeec-----------------
Confidence            111222        22222 234455688999974 588899999999999999987543210                 


Q ss_pred             cCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       273 ~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                          -....|-.-+......-++.....|.|.--.++..
T Consensus       298 ----Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          298 ----ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             ----CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             ----ccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence                11112444444444445566667777777777663

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=80.80  E-value=23  Score=29.31  Aligned_cols=105  Identities=21%  Similarity=0.196  Sum_probs=81.8

Q ss_pred             hhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCch
Q 004290          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR  442 (763)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~  442 (763)
                      .......++..+..|. +..++..+..++...+..      ...+.+++..+...   ++...|+.++..++.++|....
T Consensus        13 a~~~~~~G~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~~   82 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGD-YPTAMRHYNEAVKRDPEN------AILYSNRAACLTKL---MEFQRALDDCDTCIRLDSKFIK   82 (126)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhh---ccHHHHHHHHHHHHHhhhhhhH
Confidence            3444556666666666 789999999999876543      34566777766653   3455778889999999999999


Q ss_pred             hHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhh
Q 004290          443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (763)
Q Consensus       443 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~  477 (763)
                      +.+.+...+..+++..++...........|+....
T Consensus        83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a  117 (126)
T 4gco_A           83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA  117 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence            99999999999999999999998888888887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	763
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.004
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.7 bits (161), Expect = 2e-12
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 599 SSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT 658
           +  +D      +   D +     H N+   I   SF  + G  + +G DD    +W+   
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALK 301

Query: 659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
                +L G +  V+C+        VAT   D+ +KIW
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.7 bits (148), Expect = 9e-11
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 14/138 (10%)

Query: 37  VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINV-WSYSSRKLLHSIETGHSAN 95
           VR     +   GH+  +NAI +   G+   +GSDD    +    + ++L+          
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +    F    S  L+++G  D    +++  +             + +   H  RV  L V
Sbjct: 273 ITSVSFSK--SGRLLLAGYDDFNCNVWDALKA----------DRAGVLAGHDNRVSCLGV 320

Query: 156 EVGNPHVVWSASEDGTLR 173
                 V  + S D  L+
Sbjct: 321 TDDGMAVA-TGSWDSFLK 337

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.1 bits (144), Expect = 3e-10
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
               + ++S++  G LL++G DD + NVW          +  GH   V C     +    
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDD--GM 325

Query: 109 LVVSGAGDAEVRLFN 123
            V +G+ D+ ++++N
Sbjct: 326 AVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.4 bits (124), Expect = 8e-08
 Identities = 40/273 (14%), Positives = 76/273 (27%), Gaps = 20/273 (7%)

Query: 39  RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC 98
           ++   R L GH   + A+ W +   LL+S S D  + +W   +   +H+I    S+ V  
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMT 102

Query: 99  TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG 158
             +          + +G+        +  S   L           +              
Sbjct: 103 CAY----------APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152

Query: 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL 218
           + + + ++S D T    D   G           +  ++           L        S 
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL----SLAPDTRLFVSGACDASA 208

Query: 219 KSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275
           K  D+          G      A     +       T           +     +    H
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELMTYSH 266

Query: 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308
                 +T V+FS +G  +L  Y   +  + D 
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 12/133 (9%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
           H G V ++S      L +SG+ D    +W         +  TGH +++    F P  +  
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFP--NGN 239

Query: 109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 168
              +G+ DA  RLF+L               +  +      +  ++       ++ +  +
Sbjct: 240 AFATGSDDATCRLFDLRADQ--------ELMTYSHDNIICGITSVSFSKSGRLLL-AGYD 290

Query: 169 DGTLRQHDFRQGS 181
           D      D  +  
Sbjct: 291 DFNCNVWDALKAD 303

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 37  VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78
             +  +   L GH   V+ +     G  + +GS D+ + +W+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 637 QRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
                  SG+ D    +W+ + G   +   G E+ +N +   P     AT   D T +++
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 604 RIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIK 663
            I       +  ++   GH      +      G     + S S DG+  IW+  T   + 
Sbjct: 36  NIDPVGRIQMRTRRTLRGHLAKIYAMH----WGTDSRLLVSASQDGKLIIWDSYTTNKVH 91

Query: 664 MLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
            +    + V      P    VA  G+DN   I+
Sbjct: 92  AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.2 bits (162), Expect = 2e-12
 Identities = 30/244 (12%), Positives = 71/244 (29%), Gaps = 25/244 (10%)

Query: 46  LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-----TGHSANVFCTK 100
            + H   + ++S  +     +S S D ++ VW        +  +       H + +    
Sbjct: 10  GKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 101 FVPETS-----DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
            +           LV + +   ++  + ++R                          L  
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 156 EVGNPHVVW----SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211
              N  ++     +    GT     F   +    + + +      L       + ++  P
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL-------QGTVESP 180

Query: 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271
              +    S DIS     L+  G ++   ++ +   L PL + + + S     N    + 
Sbjct: 181 MTPSQFATSVDISER--GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238

Query: 272 LSEH 275
            S  
Sbjct: 239 FSPQ 242

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 2/125 (1%)

Query: 12  YDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD 71
                   T    +    +   S              H   V ++S+N  G  L S   D
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310

Query: 72  THINVWSYSSRKLLHSIETGHSANVFCTKF-VPETSDELVVSGAGDAEVRLFNLSRFSGR 130
             +  W   +++ + ++   H  ++   +  +        ++  G  +V+       SG 
Sbjct: 311 GKLRFWDVKTKERITTL-NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM 369

Query: 131 GLDDN 135
           G D N
Sbjct: 370 GADLN 374

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 13/71 (18%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLI------------KMLLGDEAVVNCVQCHPFD-CVVA 685
             +  S S DG   +W+ +                 K  L    V+  ++   F+ C+VA
Sbjct: 24  NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 83

Query: 686 TSGIDNTIKIW 696
           T+     +  +
Sbjct: 84  TTSFSGDLLFY 94

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (157), Expect = 6e-12
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
             L GH   V  + ++S G  ++S +DD  + VW Y +++ + ++   H   V    F  
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHK 299

Query: 104 ETSDELVVSGAGDAEVRLF 122
             +   VV+G+ D  V+++
Sbjct: 300 --TAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (155), Expect = 9e-12
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 4/112 (3%)

Query: 585 ETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIAS 644
           ET  +        S S++  I     +        VGH N    +         G +I S
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV----LFHSGGKFILS 264

Query: 645 GSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
            +DD    +W+ +  R +K L   E  V  +  H     V T  +D T+K+W
Sbjct: 265 CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.0 bits (141), Expect = 7e-10
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 39  RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC 98
           R  ++  L GH+  V  + ++   S+++S S+D  I VW Y +     +++ GH+ +V  
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQD 64

Query: 99  TKFVP 103
             F  
Sbjct: 65  ISFDH 69

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 35/191 (18%), Positives = 64/191 (33%), Gaps = 12/191 (6%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSL--VRRLSQERELEGHQGCVNAISW 58
                 H         +   +    V+ S      +  V+     +   GH+  V  +  
Sbjct: 92  ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 151

Query: 59  NSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118
           N  G+L+ S S+D  + VW  ++++    +   H   V C  + PE+S   +    G   
Sbjct: 152 NQDGTLIASCSNDQTVRVWVVATKECKAEL-REHRHVVECISWAPESSYSSISEATGSET 210

Query: 119 VRLFNLSRFSGRGLDDNAI--------TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170
            +      F   G  D  I                H   V+ +    G   ++ S ++D 
Sbjct: 211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDK 269

Query: 171 TLRQHDFRQGS 181
           TLR  D++   
Sbjct: 270 TLRVWDYKNKR 280

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 18/88 (20%), Positives = 32/88 (36%)

Query: 609 PETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGD 668
               I                 +    G+ G ++ SGS D    +W+  TG  +  L+G 
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 669 EAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           +  V  V  H     + +   D T+++W
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVW 274

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 6e-05
 Identities = 8/41 (19%), Positives = 19/41 (46%)

Query: 37  VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVW 77
            +     + L  H+  V ++ ++     +++GS D  + VW
Sbjct: 276 YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 9/44 (20%), Positives = 16/44 (36%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC 682
              + S S+D    +W+ +TG   + L G    V  +       
Sbjct: 29  FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.9 bits (148), Expect = 6e-11
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
           ++   GH   + A+S ++ G  L S   + HIN W  S+          H+  +   K 
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 641 YIASGSDDGRWFIWEKQTGRLIKMLL---GDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
            +A+GS D    +W         +++      + VN V     +  + ++G D+ IK W
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 615 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLL-GDEAVVN 673
           + Q   GH    T +         G  + S   +G    W+  TG   ++       ++ 
Sbjct: 4   IDQVRYGHNKAITALS----SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59

Query: 674 CVQCHPFDCVVATSGIDNTIKIWTPSASV 702
            ++      +   S  D+   +    + V
Sbjct: 60  GIKTTSKGDLFTVSWDDHLKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSD 107
           H   V  +SW+     L +GS D  + VW+ +       I +  H+ +   +      ++
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL--NE 280

Query: 108 ELVVSGAGDAEVRLFNLS 125
             +VS   D+ ++ +N+ 
Sbjct: 281 TTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 4/38 (10%), Positives = 13/38 (34%)

Query: 659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           G + ++  G    +  +        + ++  +  I  W
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 39

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 7e-10
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-- 106
           H+  V +++       ++SGS D  +  W   S   L  ++ GH  +V        +S  
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLG 365

Query: 107 --DELVVSGAGDAEVRLFNLSR 126
               +  +G+GD + R++   +
Sbjct: 366 PEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 1e-09
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 28/155 (18%)

Query: 41  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS------- 93
           S+     GH+  V ++ +   G  ++SGS D  + +W+  +       +T +S       
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 94  ----ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149
                 V         +DE ++SG+ D  V  ++               P  + Q H   
Sbjct: 305 IGHKDFVLSVATTQ--NDEYILSGSKDRGVLFWDKKSG----------NPLLMLQGHRNS 352

Query: 150 VKKLAVEVG-----NPHVVWSASEDGTLRQHDFRQ 179
           V  +AV  G       +V  + S D   R   +++
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 1e-09
 Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 6/88 (6%)

Query: 615 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNC 674
                        D   +    Q  +YI SGS D     W+K++G  + ML G    V  
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355

Query: 675 VQC------HPFDCVVATSGIDNTIKIW 696
           V         P   V AT   D   +IW
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 37/291 (12%), Positives = 75/291 (25%), Gaps = 41/291 (14%)

Query: 48  GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-----------------T 90
            H   V  + +++ G  L +G + T   V+  S   L+  +                   
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 91  GHSANVFCTKFVPETSDELVVS--------GAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142
                +    F P+       +           + ++ +            D   +   L
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202
                 R  ++         +  + EDG               AGS  +  R  + D   
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR--VWDSET 236

Query: 203 GAKRSLADPPKQTLSLKSCDISSTRPH----LLLVGGSDAFARLYDRRMLPPLTSCQKRM 258
           G      D   ++ +     + S         ++ G  D   +L++ +     +  +   
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296

Query: 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309
           S    V Y               +  V  + N E +L       V   D  
Sbjct: 297 SGTCEVTYIGHKD---------FVLSVATTQNDEYILSGSKDRGVLFWDKK 338

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 12/70 (17%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLG------------DEAVVNCVQCHPFDCVVAT 686
           G  + SGS D    +W  Q                       +  V  V     D  + +
Sbjct: 266 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 325

Query: 687 SGIDNTIKIW 696
              D  +  W
Sbjct: 326 GSKDRGVLFW 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 615 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRL-------IKMLLG 667
              +     ++   +   +     G YIA+GS D    +W+ +TG L        +   G
Sbjct: 193 RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 252

Query: 668 DEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
            +  V  V        V +  +D ++K+W
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 8/54 (14%)

Query: 37  VRRLSQERELEGHQGCVNAI------SWNSKGSLLISGSDDTHINVWSYSSRKL 84
            +  +    L+GH+  V ++      S   + ++  +GS D    +W Y  +K+
Sbjct: 337 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY--KKI 388

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.1 bits (141), Expect = 7e-10
 Identities = 40/231 (17%), Positives = 75/231 (32%), Gaps = 21/231 (9%)

Query: 42  QERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
           Q   L GH   V   + +    + +I+G+DD  I V+   ++K L  +  GH   V+  K
Sbjct: 4   QRTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALK 60

Query: 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160
           +       ++VSG+ D  VR++++ +     + +   +          +         N 
Sbjct: 61  YAH---GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK---------NI 108

Query: 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220
             + + S D TL      + SS P  G  H                 +           S
Sbjct: 109 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA-----S 163

Query: 221 CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271
               S   ++++ G  D    ++D   +  L              Y     
Sbjct: 164 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 214

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 2e-08
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
           H   ++AI+       ++    +   N+++  S KL+H+     +  ++   F       
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG---KT 336

Query: 109 LVVSGAGDAEVRLFNLSRFS 128
           LV +   D +  L  L  FS
Sbjct: 337 LVAAVEKDGQSFLEILD-FS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 615 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIK-MLLGDEAVVN 673
                       T++   +      + + SGS+  ++ I+  ++G+L+   +L D   + 
Sbjct: 270 ANDYSRKFSYHHTNLSAITTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANILKDADQIW 328

Query: 674 CVQCHPFDCVVATSGIDNTIKIW 696
            V       +VA    D    + 
Sbjct: 329 SVNFKG-KTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 7e-06
 Identities = 9/61 (14%), Positives = 23/61 (37%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 698
            +Y+ +G+DD    +++    + +  L G +  V  ++      +V+ S           
Sbjct: 23  DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK 82

Query: 699 S 699
            
Sbjct: 83  K 83

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 6/302 (1%)

Query: 37  VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
                   +L GH G V A+ + + G +L+SGS D  + VW        H  E  +S   
Sbjct: 40  SINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 98

Query: 97  FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
                  +     +V+G+ D  + ++ L + S             ++         + V 
Sbjct: 99  CLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 157

Query: 157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216
            G+   V + S  G +        ++      +  +C  IL         ++ D  ++  
Sbjct: 158 RGHMASVRTVSGHGNIVVSGSYD-NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 216

Query: 217 SLKSCD--ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274
              S D  I         +  +          +           +      +    +  +
Sbjct: 217 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK 276

Query: 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334
                 +L+ +T     + +L+S S     + ++  +G       + DA +I S      
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLR-SGKLVHANILKDADQIWSVNFKGK 335

Query: 335 GL 336
            L
Sbjct: 336 TL 337

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
           H+ CV ++ +   G   +S   D  +N W       +   ++  S++V          D+
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF--QSKESSSVLSCDISV--DDK 319

Query: 109 LVVSGAGDAEVRLFNL 124
            +V+G+GD +  ++ +
Sbjct: 320 YIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 9e-09
 Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 1/58 (1%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           G +  S   D     W    G  I     + + V        D  + T   D    ++
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 7e-06
 Identities = 25/292 (8%), Positives = 74/292 (25%), Gaps = 26/292 (8%)

Query: 48  GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS----RKLLHSIETGHSANVFCTKFVP 103
            H   V A++ ++    + +G     + VW  S       +           +   K +P
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
           +    +V   A    +          +    ++                      +    
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC-----FSCCSD 162

Query: 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223
            + +      Q   RQ        S      +       G   ++     +         
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD 222

Query: 224 SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283
            +++   L       +    +   +   +S  + +       Y   +H          + 
Sbjct: 223 FTSQIFSL------GYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH-------ESCVL 269

Query: 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335
            + F+  G+  + +     +      +    A  +   ++S ++S   +++ 
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPY---GASIFQSKESSSVLSCDISVDD 318

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 5/31 (16%), Positives = 11/31 (35%)

Query: 48  GHQGCVNAISWNSKGSLLISGSDDTHINVWS 78
                V +   +     +++GS D    V+ 
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 3e-09
 Identities = 43/262 (16%), Positives = 79/262 (30%), Gaps = 33/262 (12%)

Query: 39  RLSQERELEGHQGCVN-AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF 97
            L   + L+GH   V   + +   G+ ++SGSDD  + VWS  + K L ++  GH+  V+
Sbjct: 5   ELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVW 61

Query: 98  CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV 157
            ++                           + R L                    +    
Sbjct: 62  SSQMRDNIIIS-----------------GSTDRTLKVWNAETGECIHTLYGHTSTVRCMH 104

Query: 158 GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS------LADP 211
            +   V S S D TLR  D   G             R +  D R     +      + DP
Sbjct: 105 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 164

Query: 212 PKQTLSLK------SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265
             +T                     ++ G  D   R++D      + +     S    + 
Sbjct: 165 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224

Query: 266 YFCPMHLSEHGRSSLHLTHVTF 287
               + +S +  S++ +  +  
Sbjct: 225 LKDNILVSGNADSTVKIWDIKT 246

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 9e-07
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 17/137 (12%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
             L+GH   V ++ ++  G  ++SGS DT I VW   +   +H++ TGH +     +   
Sbjct: 171 HTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTL-TGHQSLTSGMEL-- 225

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
              D ++VSG  D+ V+++++                   Q   +    +     N + V
Sbjct: 226 --KDNILVSGNADSTVKIWDIKTG----------QCLQTLQGPNKHQSAVTCLQFNKNFV 273

Query: 164 WSASEDGTLRQHDFRQG 180
            ++S+DGT++  D + G
Sbjct: 274 ITSSDDGTVKLWDLKTG 290

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLL-----GDEAVVNCVQCHPFDCVVATSGIDNT- 692
            +++ + SDDG   +W+ +TG  I+ L+     G   VV  ++      V A    + T 
Sbjct: 270 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 329

Query: 693 ---IKIW 696
              + + 
Sbjct: 330 ETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 4e-05
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHP 679
           G+ I SGSDD    +W   TG+ ++ L+G    V   Q   
Sbjct: 27  GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           G ++ SGS D    +W+ +TG  I  L G +++ + ++      ++ +   D+T+KIW
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIW 242

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 13/85 (15%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET----GHSANVFCTKFVPE 104
           HQ  V  + +N   + +I+ SDD  + +W   + + + ++ T    G    V+  +    
Sbjct: 259 HQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN- 315

Query: 105 TSDELVVSGAGD----AEVRLFNLS 125
            +  +   G+ +     ++ + +  
Sbjct: 316 -TKLVCAVGSRNGTEETKLLVLDFD 339

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 4e-09
 Identities = 27/247 (10%), Positives = 64/247 (25%), Gaps = 5/247 (2%)

Query: 40  LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 99
           L +          V  + ++     ++SG  D  I +W  ++ +    + TGH+ +V C 
Sbjct: 5   LQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCL 61

Query: 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
           ++                          +     +  +             K  ++ V +
Sbjct: 62  QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121

Query: 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219
                  +    L  H                   +  + +   +              +
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH--KR 179

Query: 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279
                  R  L++ G SD   RL+D      L   +       C+ +     +S      
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK 239

Query: 280 LHLTHVT 286
           + +  + 
Sbjct: 240 IKVWDLV 246

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 13/173 (7%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
                 H  ++  +            + ++++ +         R L GH+  +  + +  
Sbjct: 131 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN--TSTCEFVRTLNGHKRGIACLQYR- 187

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
              L++SGS D  I +W       L  +E                    +VSGA D +++
Sbjct: 188 -DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-----RIVSGAYDGKIK 241

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
           +++L            +    L + H+ RV +L     +   + S+S D T+ 
Sbjct: 242 VWDLVAALDPRAPAGTLCLRTLVE-HSGRVFRLQF---DEFQIVSSSHDDTIL 290

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 641 YIASGSDDGRWFIWEKQTG---------RLIKMLLGDEAVVNCVQCHPFDCVVATSGIDN 691
            I SG+ DG+  +W+               ++ L+     V  +Q   F   + +S  D+
Sbjct: 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDD 287

Query: 692 TIKIW 696
           TI IW
Sbjct: 288 TILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCV 683
              I SG  D    IW+K T    ++L G    V C+Q      +
Sbjct: 25  DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVW 77
           R L  H G V  + ++     ++S S D  I +W
Sbjct: 261 RTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 641 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           YI S S D    +W   T   ++ L G +  + C      D +V +   DNTI++W
Sbjct: 150 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIRLW 203

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 1e-08
 Identities = 31/308 (10%), Positives = 77/308 (25%), Gaps = 24/308 (7%)

Query: 46  LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET--GHSANVFCTKFVP 103
            +  +  ++ I      SLL+  S D  + V+ +  +     +     +   + C  F+ 
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
            T  ++ V       +++  +   S + L +N         C     K +A        V
Sbjct: 67  NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126

Query: 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI--------------LLDLRCGAKRSLA 209
                 G          S+     +                         L      +  
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186

Query: 210 DPPKQTLSLKSCD-ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268
                         +             D    +          +  KR +      + C
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA------FRC 240

Query: 269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS 328
                +    +  +  + FSP  + +  + S   +   ++     +   +   +   ++ 
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ-TRKKIKNFAKFNEDSVVK 299

Query: 329 FTPTLNGL 336
              + N L
Sbjct: 300 IACSDNIL 307

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 12/138 (8%)

Query: 6   FHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL 65
           +   SI   +     D + D  +S +  +    R     +       VN+I ++ +   L
Sbjct: 209 YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR--LNLKDTNLAYPVNSIEFSPRHKFL 266

Query: 66  ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125
            +   D  I+ W+  +RK + +    +  +V   K     SD ++     D      +  
Sbjct: 267 YTAGSDGIISCWNLQTRKKIKNFAKFNEDSV--VKIAC--SDNILCLATSD------DTF 316

Query: 126 RFSGRGLDDNAITPSALY 143
           + +        +  S++Y
Sbjct: 317 KTNAAIDQTIELNASSIY 334

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 641 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           ++ +   DG    W  QT + IK           V+    D ++  +  D+T K  
Sbjct: 265 FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS-VVKIACSDNILCLATSDDTFKTN 319

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.5 bits (129), Expect = 2e-08
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
           H G V  ++W+  G+ + S S D  I +W+ ++ K+  +I  G          +   + +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQ 294

Query: 109 LVVSGAGDAEVRLFNL 124
            +VS + +  +   N 
Sbjct: 295 ALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKML-LGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT 697
           G  IAS S D    IW   T ++ K + +G       +        + +   +  I    
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

Query: 698 P 698
           P
Sbjct: 310 P 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 1/61 (1%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 698
           GD I   +     +     +    ++           +  P     A+  +   ++IW  
Sbjct: 29  GDKIQYCNGTSV-YTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT 87

Query: 699 S 699
           +
Sbjct: 88  T 88

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.2 bits (128), Expect = 2e-08
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 615 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWE-KQTGRLIKMLLGDEAVVN 673
            +   +   +     K A+      D +A+GS D   FI+  K+  ++IK L   +  VN
Sbjct: 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN 262

Query: 674 CVQCHPFDCVVATSGIDNTIKIWT 697
            +        + +SG D  IK W 
Sbjct: 263 NLLWET-PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 3e-06
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 10/62 (16%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
           + + GH   + A++ N     LISGS D  I  WS        S+   HS  +       
Sbjct: 7   KTISGHNKGITALTVNP----LISGSYDGRIMEWS------SSSMHQDHSNLIVSLDNSK 56

Query: 104 ET 105
             
Sbjct: 57  AQ 58

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.5 bits (108), Expect = 6e-06
 Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 3/117 (2%)

Query: 7   HDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLI 66
              +     D        D+       S    R S+   +        A     +  L+ 
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231

Query: 67  SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123
           +GS DT+I ++S      +      H   V    +        +VS   DA ++ +N
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET---PSTLVSSGADACIKRWN 285

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.5 bits (129), Expect = 3e-08
 Identities = 10/72 (13%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 53  VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVV 111
           ++  +WN   + +    ++  ++++  S  K +   E   H+  V    + P      +V
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP--DSNRIV 67

Query: 112 SGAGDAEVRLFN 123
           +   D    ++ 
Sbjct: 68  TCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 639 GDYIASGSDDGRWFIWEKQTGR--LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
              IA   ++    I+EK   +   +  L      V  V   P    + T G D    +W
Sbjct: 19  RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 78

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (109), Expect = 6e-06
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY 79
          NH + ++     +  Q  EL+ H G V  + W    + +++   D +  VW+ 
Sbjct: 28 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 80

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 24/182 (13%), Positives = 57/182 (31%), Gaps = 12/182 (6%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M       G ++ +  + +      V+H   +  +   +      L      + A+++ +
Sbjct: 194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT 253

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           + SL+ +G D     +++Y S     S   G       +     T+ E   +    A   
Sbjct: 254 ESSLVAAGHDC-FPVLFTYDSAAGKLSF-GGRLDVPKQSSQRGLTARERFQNLDKKASSE 311

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
               +      L  N+++  ++      +  +            +   DG +   D R  
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC----------TTGMDGGMSIWDVRSL 361

Query: 181 SS 182
            S
Sbjct: 362 ES 363

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 2/77 (2%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET-GHSANVFCTKFVPETSD 107
                             +   D  I VW  ++ K +                 V  T +
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-TGN 308

Query: 108 ELVVSGAGDAEVRLFNL 124
             ++S + D  +  + L
Sbjct: 309 GRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 4e-06
 Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ---CHPFDCVVATSGIDNTIKI 695
               A+   D    +W+  T + ++    D+  +   Q       +  + +  +D T+  
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 696 W 696
           +
Sbjct: 323 Y 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 11/119 (9%), Positives = 37/119 (31%), Gaps = 5/119 (4%)

Query: 49  HQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPET 105
            +     +S++   + +         +        K+  +       S+ V   KF P  
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164
             + + SG    +V ++  +    +  +   +   + +Q     +  ++ +     +  
Sbjct: 76  GSQYLCSGDESGKVIVWGWT--FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 7/89 (7%)

Query: 38  RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF 97
                   LE      +        +      +   +  +   +RK+     T    N+ 
Sbjct: 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-----TEVKNNLT 318

Query: 98  CTKFVPETSDELVVSGAGDAEVRLFNLSR 126
             +   +   + V+    D ++  F L +
Sbjct: 319 DLRLSAD--RKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 6/49 (12%), Positives = 20/49 (40%)

Query: 42  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET 90
           + R++   +  +  +  ++    ++   DD  I  +     +   ++ET
Sbjct: 306 KTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVET 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 13/120 (10%), Positives = 32/120 (26%), Gaps = 3/120 (2%)

Query: 7   HDGSIYDMLDTRHTDTRPDVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLL 65
           + G I+ +  +           +L         R    +++  H+          +    
Sbjct: 214 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 273

Query: 66  ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125
              +    + V    + + L   E GH   +       +    L     GD  + + +  
Sbjct: 274 RHKTASRFVVVLDAKTGERLAKFEMGHE--IDSINVSQDEKPLLYALSTGDKTLYIHDAE 331

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 9e-04
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 381 YYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440
                +  E  + + + +     H       A + + +   + + A+R    A  +    
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ--GNIEEAVRLYRKALEVFPEF 338

Query: 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475
             AH  ++  L+Q  K +EAL     A  + P+ +
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 2/131 (1%)

Query: 419 WKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478
                + A+ DC  A  +D  S +AH ++ +   ++  Y EA+     A  L     +  
Sbjct: 50  KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-- 107

Query: 479 EKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSER 538
              ++I   +  A+ ++ N   +     E      L+      R     +  ++    E 
Sbjct: 108 NFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167

Query: 539 EDSDYDEEVEV 549
           +     ++  +
Sbjct: 168 DGHIRAQQACI 178

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 5/83 (6%), Positives = 21/83 (25%), Gaps = 2/83 (2%)

Query: 12  YDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSD 70
               +           +   +             +         I+    G  + ++ S 
Sbjct: 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSF 264

Query: 71  DTHINVWSYSSRKLLHSIETGHS 93
              ++V   ++  +  ++  G +
Sbjct: 265 CNTVSVIDTATNTITATMAVGKN 287

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	763
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.98
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.98
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.83
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.82
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.74
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.66
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.66
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.66
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.63
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.62
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.41
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.3
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.26
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.22
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.91
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.9
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.78
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.77
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.61
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.59
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.52
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.52
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.4
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.37
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.32
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.29
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.25
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.23
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.21
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.12
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.0
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.95
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.89
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.38
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.11
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.1
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.59
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.46
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.23
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.12
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.88
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.77
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.43
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.1
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	92.84
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	92.83
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.68
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.5
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.43
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.58
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	90.26
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.32
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	87.34
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	86.76
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	85.46
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	81.44
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	80.34

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-39  Score=336.38  Aligned_cols=210  Identities=18%  Similarity=0.296  Sum_probs=172.5

Q ss_pred             cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      ....+.|+||.+.|++|+|+|++++||||+.||+|+|||+.+++.+.++ .+|...|.+++|+|+  +.+++++..++.+
T Consensus         7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-~~h~~~V~~~~~~~~--~~~~~~~~~~~~~   83 (317)
T d1vyhc1           7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS--GKLLASCSADMTI   83 (317)
T ss_dssp             SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCC
T ss_pred             CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCCCcEEEEeeecc--ccccccccccccc
Confidence            4456789999999999999999999999999999999999999999999 799999999999999  7999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      .+|+....          .....+.+|...+.++.|+| ++..+++++.|+.+++||+++++..                
T Consensus        84 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~----------------  136 (317)
T d1vyhc1          84 KLWDFQGF----------ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCV----------------  136 (317)
T ss_dssp             CEEETTSS----------CEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE----------------
T ss_pred             cccccccc----------ccccccccccccceeeeccC-CCceEEeeccCcceeEeecccceee----------------
Confidence            99998863          33556678999999999999 6688999999999999999887521                


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                               .....+...+.+++|+|+ +.+|++++.|+.|++|++++++.+..+..                    +..
T Consensus       137 ---------~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~~~~--------------------~~~  186 (317)
T d1vyhc1         137 ---------KTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAELRE--------------------HRH  186 (317)
T ss_dssp             ---------EEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECC--------------------CSS
T ss_pred             ---------eEEccCCCcceeeecccC-CCEEEEEeCCCeEEEEeeccceeeEEEec--------------------CCC
Confidence                     111245667899999997 78999999999999999998765443321                    222


Q ss_pred             cceeEEEEcC--------------------CCCEEEEEeCCCeEEEEECCC
Q 004290          280 LHLTHVTFSP--------------------NGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       280 ~~i~~v~~sp--------------------dg~~l~~~s~d~~i~iwd~~~  310 (763)
                       .+.+++|+|                    .+.++++++.|+.|++||+.+
T Consensus       187 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  236 (317)
T d1vyhc1         187 -VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  236 (317)
T ss_dssp             -CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             -CceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC
Confidence             244444444                    456788888888888888766

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-39  Score=338.30  Aligned_cols=214  Identities=19%  Similarity=0.258  Sum_probs=174.9

Q ss_pred             hhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE----EEEEccCCCCceEEEEEeeCCCCcEEEE
Q 004290           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL----LHSIETGHSANVFCTKFVPETSDELVVS  112 (763)
Q Consensus        37 ~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~----~~~~~~~h~~~V~~v~~~p~~~~~~l~s  112 (763)
                      .++.+.++.| +|...|++++|+|+|++||+|+ ||.|+|||+.++..    ......+|...|.+++|+|+  +++|++
T Consensus        39 p~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d--g~~l~s  114 (337)
T d1gxra_          39 PRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLIV  114 (337)
T ss_dssp             CSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEEE
T ss_pred             CCCceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCC--CCEEEE
Confidence            3455677777 7999999999999999999997 79999999976432    12222589999999999999  799999


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004290          113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  192 (763)
Q Consensus       113 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  192 (763)
                      |+.|+.|++||+.....        .....+..|...+.+++|+| ++.++++++.|+.|++||+++++..         
T Consensus       115 ~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~---------  176 (337)
T d1gxra_         115 GGEASTLSIWDLAAPTP--------RIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLV---------  176 (337)
T ss_dssp             EESSSEEEEEECCCC----------EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE---------
T ss_pred             eeccccccccccccccc--------cccccccccccccccccccc-ccccccccccccccccccccccccc---------
Confidence            99999999999986432        33567788999999999999 6689999999999999999876521         


Q ss_pred             cceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccc
Q 004290          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (763)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (763)
                                      .....|...|.+++|+++ +..+++++.|+.|++||+++++.+..+                  
T Consensus       177 ----------------~~~~~~~~~v~~l~~s~~-~~~~~~~~~d~~v~i~d~~~~~~~~~~------------------  221 (337)
T d1gxra_         177 ----------------RQFQGHTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQLQQH------------------  221 (337)
T ss_dssp             ----------------EEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE------------------
T ss_pred             ----------------cccccccccccccccccc-ccccccccccccccccccccceeeccc------------------
Confidence                            112245678999999997 689999999999999999987543221                  


Q ss_pred             cCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       273 ~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                         .+.. .|++++|+|++++|++++.|+.|++||+.++
T Consensus       222 ---~~~~-~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~  256 (337)
T d1gxra_         222 ---DFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             ---ECSS-CEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred             ---cccc-ceEEEEEcccccccceecccccccccccccc
Confidence               1223 5999999999999999999999999998773

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.4e-39  Score=343.20  Aligned_cols=211  Identities=19%  Similarity=0.291  Sum_probs=167.7

Q ss_pred             ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-----------------cCCCCceEEEEEeeCCCCcE
Q 004290           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-----------------TGHSANVFCTKFVPETSDEL  109 (763)
Q Consensus        47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~-----------------~~h~~~V~~v~~~p~~~~~~  109 (763)
                      .+|++.|+||+|+|||++||+|+ |++|+|||+.+++.+..+.                 ..|...|.+++|+|+  +++
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--~~~  135 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--GKF  135 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT--SSE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC--CCc
Confidence            36999999999999999999987 8999999999988776652                 246677999999999  799


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004290          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (763)
Q Consensus       110 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  189 (763)
                      |++|+.||.|++||....          ..+..+.+|...|.++.|++ ++..+++++.++.|++||+++....      
T Consensus       136 l~s~~~dg~v~i~~~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~------  198 (388)
T d1erja_         136 LATGAEDRLIRIWDIENR----------KIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCS------  198 (388)
T ss_dssp             EEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE------
T ss_pred             ceeccccccccccccccc----------cccccccccccccccccccc-ccccccccccceeeeeeeccccccc------
Confidence            999999999999999863          34677788999999999999 6688889999999999999876421      


Q ss_pred             CcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccc
Q 004290          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (763)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  269 (763)
                           . ..              .+.....++.+.+.++++|++|+.|+.|++||.+++..+..+..             
T Consensus       199 -----~-~~--------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-------------  245 (388)
T d1erja_         199 -----L-TL--------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS-------------  245 (388)
T ss_dssp             -----E-EE--------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------
T ss_pred             -----c-cc--------------ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecc-------------
Confidence                 0 00              12234566777776689999999999999999998765433321             


Q ss_pred             ccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       270 ~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ......+|.. .|++++|+|++++|++++.|+.|++||+.++
T Consensus       246 ~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         246 ENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             -----CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             ccccccCCCC-CEEEEEECCCCCEEEEEECCCcEEEEeccCC
Confidence            1111134555 6999999999999999999999999999874

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-37  Score=324.79  Aligned_cols=214  Identities=23%  Similarity=0.339  Sum_probs=174.9

Q ss_pred             cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      ++..++|+||.+.|++|+|+|++++||||+.||+|+|||+.+++.+..+ ..|...|.+++|+|+  +.++++|+.|+.+
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~v~~~~~--~~~l~~~~~d~~i  121 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPS--GNYVACGGLDNIC  121 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE-ECSCSCEEEEEECTT--SSEEEEEETTCCE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEE-ecccccEEeeEeecc--ceeeeeeccccee
Confidence            4567889999999999999999999999999999999999999999998 789999999999999  7999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      ++|+.......      ......+.+|...........  ...+.....|.....++.......                
T Consensus       122 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----------------  177 (340)
T d1tbga_         122 SIYNLKTREGN------VRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQQT----------------  177 (340)
T ss_dssp             EEEESSSSCSC------CCEEEEECCCSSCEEEEEEEE--TTEEEEEETTTEEEEEETTTTEEE----------------
T ss_pred             ecccccccccc------cccceeccccccccccccccc--cccccccccccccccccccccccc----------------
Confidence            99998864322      233556677887777776665  357778888999999987765311                


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                               .....+...+....+.+. ..++++|+.|+.|++||+++++.+..+                    .+|..
T Consensus       178 ---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~v~i~d~~~~~~~~~~--------------------~~h~~  227 (340)
T d1tbga_         178 ---------TTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTF--------------------TGHES  227 (340)
T ss_dssp             ---------EEEECCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEE--------------------CCCSS
T ss_pred             ---------ccccccceeEeeeccccc-cceeEEeecCceEEEEECCCCcEEEEE--------------------eCCCC
Confidence                     001123456778888886 689999999999999999987544322                    33544


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                       .|++++|+|++++|++++.|+.|++|++...
T Consensus       228 -~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         228 -DINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             -CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             -CeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence             5999999999999999999999999999873

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.8e-37  Score=318.15  Aligned_cols=204  Identities=15%  Similarity=0.194  Sum_probs=168.7

Q ss_pred             ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~  128 (763)
                      +.+.+..++++|+|+.||.++ ++.|.+||+.++.....+ .+|...|++++|+|+  +++|++|+.||+|+|||+....
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~-~~H~~~v~~~~~sp~--g~~latg~~dg~i~iwd~~~~~   91 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPS--GYYCASGDVHGNVRIWDTTQTT   91 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEEEEESSSTT
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEE-cCCCCCEEEEEEeCC--CCeEeccccCceEeeeeeeccc
Confidence            455677899999999999986 467999999999888888 799999999999999  8999999999999999998743


Q ss_pred             CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (763)
                      .        .....+..|..+|.+|+|+| ++.+|++++.  +..+++|++.+++..                       
T Consensus        92 ~--------~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~-----------------------  139 (311)
T d1nr0a1          92 H--------ILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSN-----------------------  139 (311)
T ss_dssp             C--------CEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBC-----------------------
T ss_pred             c--------ccccccccccCccccccccc-ccccccccccccccccccccccccccc-----------------------
Confidence            2        22356788999999999999 5678878875  466999999877532                       


Q ss_pred             eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004290          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (763)
Q Consensus       207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~  286 (763)
                        ....+|...|++++|+|++...|++|+.|+.|++||+++++....+                    .+|.. .|++++
T Consensus       140 --~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~--------------------~~~~~-~i~~v~  196 (311)
T d1nr0a1         140 --GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF--------------------GEHTK-FVHSVR  196 (311)
T ss_dssp             --BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE--------------------CCCSS-CEEEEE
T ss_pred             --ccccccccccccccccccceeeeccccccccccccccccccccccc--------------------ccccc-cccccc
Confidence              2234567789999999986667999999999999999976533221                    23444 599999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          287 FSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       287 ~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      |+|++++|++++.|+.|++||+.++
T Consensus       197 ~~p~~~~l~~~~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         197 YNPDGSLFASTGGDGTIVLYNGVDG  221 (311)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             cCccccccccccccccccccccccc
Confidence            9999999999999999999999874

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-36  Score=311.02  Aligned_cols=209  Identities=17%  Similarity=0.197  Sum_probs=164.5

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      ++.++++||.+.|++|+|+|+|++||||+.||+|++||+.+++.+..+..+|...|.+++|+|+  +. +++++.|+.++
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~--g~-~~~~~~d~~v~   79 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK--GD-LFTVSWDDHLK   79 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT--SC-EEEEETTTEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc--ce-eecccceeeEE
Confidence            5678999999999999999999999999999999999999999998886689999999999998  55 56677899999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  200 (763)
                      +|+.......       ........+...+.+++|+| ++.+++++ .++.+++|+......             .    
T Consensus        80 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~-~g~~~~~~-~~~~i~~~~~~~~~~-------------~----  133 (299)
T d1nr0a2          80 VVPAGGSGVD-------SSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYSHGKLTE-------------V----  133 (299)
T ss_dssp             EECSSSSSSC-------TTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEETTEEEE-------------E----
T ss_pred             EeccCCcccc-------cccccccccccccccccccc-cccccccc-ccccccccccccccc-------------c----
Confidence            9998753211       11233456788899999999 55666554 457899998543210             0    


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (763)
                                  .....+.+++|+|+ +++|++|+.|+.|++||+++.+....                   ...+|.. 
T Consensus       134 ------------~~~~~~~~~~~s~~-~~~l~~g~~dg~i~~~d~~~~~~~~~-------------------~~~~~~~-  180 (299)
T d1nr0a2         134 ------------PISYNSSCVALSND-KQFVAVGGQDSKVHVYKLSGASVSEV-------------------KTIVHPA-  180 (299)
T ss_dssp             ------------ECSSCEEEEEECTT-SCEEEEEETTSEEEEEEEETTEEEEE-------------------EEEECSS-
T ss_pred             ------------cccccccccccccc-cccccccccccccccccccccccccc-------------------ccccccc-
Confidence                        01234678999997 78999999999999999986532110                   0012333 


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .|++++|+|++++|++++.|+.|++||+.++
T Consensus       181 ~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~  211 (299)
T d1nr0a2         181 EITSVAFSNNGAFLVATDQSRKVIPYSVANN  211 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            5999999999999999999999999998773

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-35  Score=315.00  Aligned_cols=225  Identities=15%  Similarity=0.174  Sum_probs=173.6

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~  127 (763)
                      .++|+|++|+|+|++||+|+.|+.|+|||+.+++  .+..+ .+|.++|.+++|+|+  +++|++|+.|++|+|||+...
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l-~gH~~~V~~l~fsp~--~~~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETT--TTEEEEEETTSCEEEEEEETT
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEe-cCCCCCEEEEEECCC--CCEEEEEECCCeEEEEeeccc
Confidence            4789999999999999999999999999998775  55666 799999999999999  799999999999999999864


Q ss_pred             CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (763)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (763)
                      ..        .+...+.+|...|.+++|+| +++.|++++.|++|++|++......           .          ..
T Consensus        84 ~~--------~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~-----------~----------~~  133 (371)
T d1k8kc_          84 TW--------KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDW-----------W----------VC  133 (371)
T ss_dssp             EE--------EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTE-----------E----------EE
T ss_pred             cc--------cccccccccccccccccccc-ccccceeecccCcceeeeeeccccc-----------c----------cc
Confidence            32        23456678999999999999 6689999999999999998765421           0          11


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (763)
Q Consensus       208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~  287 (763)
                      ......+...|.+++|+|+ +.+|++|+.|+.|++||+...............  ....+........+|.. .|++++|
T Consensus       134 ~~~~~~~~~~v~~v~~~p~-~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~v~~~~~  209 (371)
T d1k8kc_         134 KHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG--SKMPFGELMFESSSSCG-WVHGVCF  209 (371)
T ss_dssp             EEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB--SCCCTTCEEEECCCCSS-CEEEEEE
T ss_pred             ccccccccccccccccccc-ccceeccccCcEEEEEeeccCcccccccccccc--ccccceeeeeeccCccC-cEEEEEe
Confidence            1223346778999999997 789999999999999999875533221110000  00000001111234554 6999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCC
Q 004290          288 SPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       288 spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +|+|++|++++.|+.|++||+.++
T Consensus       210 s~~g~~l~s~~~d~~i~iwd~~~~  233 (371)
T d1k8kc_         210 SANGSRVAWVSHDSTVCLADADKK  233 (371)
T ss_dssp             CSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             ecccccccccccCCcceEEeeecc
Confidence            999999999999999999998763

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.2e-34  Score=297.73  Aligned_cols=246  Identities=17%  Similarity=0.285  Sum_probs=168.9

Q ss_pred             ceeeccccCce-EEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004290           43 ERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (763)
Q Consensus        43 ~~~l~gH~~~V-~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i  121 (763)
                      ..+|+||.+.| +|++|  ++++||||+.|++|+|||+.+++.+.++ .+|.+.|++++|+|+   .+|++|+.|++|++
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l-~~H~~~V~~l~~s~~---~~l~s~s~D~~i~i   78 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHG---GILVSGSTDRTVRV   78 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEE-ECCSSCEEEEEEETT---TEEEEEETTCCEEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEE-ECCCCCEEEEEEcCC---CEEEEEeccccccc
Confidence            56799999886 66665  5889999999999999999999999999 799999999999986   58999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCceee--ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          122 FNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      |+.....          .....  ..+...+..+.+.+ ++.++++++.|+.|++||+++............  ......
T Consensus        79 w~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~--~~~~~~  145 (355)
T d1nexb2          79 WDIKKGC----------CTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD--YPLVFH  145 (355)
T ss_dssp             EETTTTE----------EEEEECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------C--CCEEES
T ss_pred             ccccccc----------ccccccccccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccce--ecccee
Confidence            9998632          12222  22333445566677 668899999999999999988764322111110  000110


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                      ........+.....+...+...  .++ +++++++..|+.|++||+++++.+...                    .++..
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~~--~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~--------------------~~~~~  202 (355)
T d1nexb2         146 TPEENPYFVGVLRGHMASVRTV--SGH-GNIVVSGSYDNTLIVWDVAQMKCLYIL--------------------SGHTD  202 (355)
T ss_dssp             CTTTCTTEEEEEECCSSCEEEE--EEE-TTEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS
T ss_pred             ccccccceeeeeeecccccccc--ccc-cceeeeecccceeeeeecccccceeee--------------------ecccc
Confidence            0000001111112233334433  333 579999999999999999976543221                    12222


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeecc
Q 004290          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (763)
Q Consensus       280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (763)
                       .+.++.|+|++.++++++.|+.|++||+.++........+...+..++++|
T Consensus       203 -~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~  253 (355)
T d1nexb2         203 -RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD  253 (355)
T ss_dssp             -CEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS
T ss_pred             -ccccccccccceeeecccccceEEeeecccccccccccccccccccccccc
Confidence             488999999999999999999999999999765555555555555555554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.8e-33  Score=287.14  Aligned_cols=229  Identities=15%  Similarity=0.150  Sum_probs=189.1

Q ss_pred             cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEE--EEEccCCCCceEEEEEeeCC
Q 004290           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPET  105 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~--~~~~~~h~~~V~~v~~~p~~  105 (763)
                      +.+.+|+  +.+....+.|.+|.+.|++++|+|+|++||+|+.||+|+|||+.++...  ..+ .+|..+|.+++|+|+ 
T Consensus        38 ~~v~i~~--~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~d-  113 (311)
T d1nr0a1          38 TSVYTVP--VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSE-  113 (311)
T ss_dssp             TEEEEEE--TTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-ECSSSCEEEEEECTT-
T ss_pred             CEEEEEE--CCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccc-ccccCcccccccccc-
Confidence            4566666  5677888899999999999999999999999999999999999887543  345 789999999999999 


Q ss_pred             CCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290          106 SDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (763)
Q Consensus       106 ~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~  183 (763)
                       +++|++++.  ++.+++|++.+.          ++...+.+|.+.|++++|+|++..+|++|+.|+.|++||+++.+..
T Consensus       114 -~~~l~~~~~~~~~~~~v~~~~~~----------~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~  182 (311)
T d1nr0a1         114 -SKRIAAVGEGRERFGHVFLFDTG----------TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK  182 (311)
T ss_dssp             -SCEEEEEECCSSCSEEEEETTTC----------CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE
T ss_pred             -ccccccccccccccccccccccc----------cccccccccccccccccccccceeeecccccccccccccccccccc
Confidence             789998886  466999999863          3366788999999999999977667999999999999999876421


Q ss_pred             CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004290          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (763)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (763)
                                               .....|...|++++|+|+ +++|++++.|+.|++||++++.....+.        
T Consensus       183 -------------------------~~~~~~~~~i~~v~~~p~-~~~l~~~~~d~~v~~~d~~~~~~~~~~~--------  228 (311)
T d1nr0a1         183 -------------------------STFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFE--------  228 (311)
T ss_dssp             -------------------------EEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECB--------
T ss_pred             -------------------------cccccccccccccccCcc-cccccccccccccccccccccccccccc--------
Confidence                                     122346778999999997 7899999999999999999876443332        


Q ss_pred             ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                           .......+|.. .|++++|+|++++|++|+.|+.|+|||++++
T Consensus       229 -----~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         229 -----DDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             -----CTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             -----ccccccccccc-cccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence                 12222245666 6999999999999999999999999999874

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-32  Score=285.78  Aligned_cols=228  Identities=21%  Similarity=0.282  Sum_probs=158.5

Q ss_pred             hhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC
Q 004290           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (763)
Q Consensus        37 ~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d  116 (763)
                      ..++++.+.|+||++.|.+ +++++|++||||+.||+|+|||+.+++++.++ .+|...|.+++|+|+    +|++|+.|
T Consensus         3 ~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~h~~~V~~v~~~~~----~l~s~s~D   76 (342)
T d2ovrb2           3 RGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRDN----IIISGSTD   76 (342)
T ss_dssp             HSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEETT----EEEEEETT
T ss_pred             CCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCCCCEEEEEeCCC----ccccceec
Confidence            3567888999999999865 36668999999999999999999999999998 799999999999864    89999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC----------
Q 004290          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA----------  186 (763)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----------  186 (763)
                      +.+++|+.....          .......+...+......+   ..+..+..|+.+.+|+..+++.....          
T Consensus        77 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~  143 (342)
T d2ovrb2          77 RTLKVWNAETGE----------CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV  143 (342)
T ss_dssp             SCEEEEETTTTE----------EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred             cccccccccccc----------ceecccccceeEeeeeccc---ccccccccceeEEEeecccccceeeeecccccceee
Confidence            999999998632          1223333444444444432   45667777888888887766532100          


Q ss_pred             -------CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004290          187 -------GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (763)
Q Consensus       187 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~  259 (763)
                             ..........+++.....  .+....+|...+..+.++   +.+|++|+.|+.|++||++.++.+..+     
T Consensus       144 ~~~~~~~~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~---~~~l~s~~~dg~i~~~d~~~~~~~~~~-----  213 (342)
T d2ovrb2         144 QYDGRRVVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQFD---GIHVVSGSLDTSIRVWDVETGNCIHTL-----  213 (342)
T ss_dssp             EECSSCEEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEEC---SSEEEEEETTSCEEEEETTTCCEEEEE-----
T ss_pred             ccccceeeeecCCCeEEEeecccce--eeEEEcCcccccccccCC---CCEEEEEeCCCeEEEeecccceeeeEe-----
Confidence                   000011122233333222  122233455555555553   569999999999999999987544322     


Q ss_pred             CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                                     .+|.. .+.++.+++  ++|++++.|+.|++||+...
T Consensus       214 ---------------~~~~~-~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~  247 (342)
T d2ovrb2         214 ---------------TGHQS-LTSGMELKD--NILVSGNADSTVKIWDIKTG  247 (342)
T ss_dssp             ---------------CCCCS-CEEEEEEET--TEEEEEETTSCEEEEETTTC
T ss_pred             ---------------ccccc-ceeEEecCC--CEEEEEcCCCEEEEEecccc
Confidence                           23443 477777654  69999999999999998874

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-32  Score=280.92  Aligned_cols=213  Identities=16%  Similarity=0.249  Sum_probs=155.6

Q ss_pred             ceEEEEeCCCCCEEEEEeCCC-cEEEEeCCCC--eEEEEEccCC-CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004290           52 CVNAISWNSKGSLLISGSDDT-HINVWSYSSR--KLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~-~v~iWd~~~~--~~~~~~~~~h-~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~  127 (763)
                      .+++++|+|+|+.||.++.+. .|+.||....  ..+..+ .+| ...|++++|+|..++.+|++|+.||+|+|||+...
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~-~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEE-eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            467899999999999887653 3566765433  346666 566 57899999999755789999999999999999753


Q ss_pred             CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe--CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004290          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (763)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (763)
                      .....  ........+..|.++|.+++|+| ++.++++++  .++.+++|+..+++.                       
T Consensus        98 ~~~~~--~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~-----------------------  151 (325)
T d1pgua1          98 KESNS--VEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNS-----------------------  151 (325)
T ss_dssp             GGGTE--EEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCE-----------------------
T ss_pred             cceee--eecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeeccccc-----------------------
Confidence            21100  00011123456889999999999 556666655  467899999887652                       


Q ss_pred             eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEE
Q 004290          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (763)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v  285 (763)
                        +....+|...|++++|+|+++.++++++.|+.|++||....+......                 ...+|.. .|+++
T Consensus       152 --~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~-----------------~~~~~~~-~v~~v  211 (325)
T d1pgua1         152 --LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-----------------THHKQGS-FVRDV  211 (325)
T ss_dssp             --EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-----------------SSSCTTC-CEEEE
T ss_pred             --ceeeeecccccccccccccccceEEEeecccccccccccccccceecc-----------------cccCCCC-ccEEe
Confidence              222345778899999999876678899999999999987654222110                 0123444 59999


Q ss_pred             EEcCC-CCEEEEEeCCCeEEEEECCCC
Q 004290          286 TFSPN-GEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       286 ~~spd-g~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +|+|+ +.+|++++.|+.|++||++++
T Consensus       212 ~~~pd~~~~l~s~~~d~~i~iwd~~~~  238 (325)
T d1pgua1         212 EFSPDSGEFVITVGSDRKISCFDGKSG  238 (325)
T ss_dssp             EECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred             eeccccceeccccccccceeeeeeccc
Confidence            99997 688999999999999998774

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.6e-32  Score=276.69  Aligned_cols=194  Identities=15%  Similarity=0.196  Sum_probs=154.3

Q ss_pred             EEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEE
Q 004290           76 VWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV  155 (763)
Q Consensus        76 iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  155 (763)
                      .|.... ....++ .||.++|++++|+|+  +++|+||+.||+|+|||+.++          +++..+.+|...|.+++|
T Consensus         2 ~w~p~~-~~~~~L-~GH~~~I~~l~~sp~--~~~l~s~s~Dg~i~iWd~~~~----------~~~~~~~~h~~~V~~~~~   67 (317)
T d1vyhc1           2 EWIPRP-PEKYAL-SGHRSPVTRVIFHPV--FSVMVSASEDATIKVWDYETG----------DFERTLKGHTDSVQDISF   67 (317)
T ss_dssp             CCCCCS-SCSCEE-ECCSSCEEEEEECSS--SSEEEEEESSSCEEEEETTTC----------CCCEEECCCSSCEEEEEE
T ss_pred             ccCCCC-CccEEE-cCCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC----------CEEEEEeCCCCcEEEEee
Confidence            454432 334456 799999999999999  799999999999999999873          447888999999999999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe
Q 004290          156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG  235 (763)
Q Consensus       156 sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs  235 (763)
                      +| ++.++++++.++.+.+|+....+.                         ......+...+.++.|+|+ ++.+++++
T Consensus        68 ~~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~  120 (317)
T d1vyhc1          68 DH-SGKLLASCSADMTIKLWDFQGFEC-------------------------IRTMHGHDHNVSSVSIMPN-GDHIVSAS  120 (317)
T ss_dssp             CT-TSSEEEEEETTSCCCEEETTSSCE-------------------------EECCCCCSSCEEEEEECSS-SSEEEEEE
T ss_pred             ec-cccccccccccccccccccccccc-------------------------ccccccccccceeeeccCC-CceEEeec
Confidence            99 668999999999999999877642                         1222356678899999997 68999999


Q ss_pred             CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccc
Q 004290          236 SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA  315 (763)
Q Consensus       236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~  315 (763)
                      .|+.+++||+++++.+..+                    .+|.. .+.+++|+|++.+|++++.|+.|++|++.++....
T Consensus       121 ~d~~~~~~~~~~~~~~~~~--------------------~~~~~-~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~  179 (317)
T d1vyhc1         121 RDKTIKMWEVQTGYCVKTF--------------------TGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA  179 (317)
T ss_dssp             TTSEEEEEETTTCCEEEEE--------------------ECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             cCcceeEeecccceeeeEE--------------------ccCCC-cceeeecccCCCEEEEEeCCCeEEEEeeccceeeE
Confidence            9999999999987543322                    23444 59999999999999999999999999999876544


Q ss_pred             eEeecCCCCeeeeecc
Q 004290          316 MRYTVGDASKIMSFTP  331 (763)
Q Consensus       316 ~~~~~~~~~~~~~~~p  331 (763)
                      ....+...+..++|+|
T Consensus       180 ~~~~~~~~i~~~~~~~  195 (317)
T d1vyhc1         180 ELREHRHVVECISWAP  195 (317)
T ss_dssp             EECCCSSCEEEEEECC
T ss_pred             EEecCCCCceEEEEee
Confidence            4444455555555555

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-30  Score=263.26  Aligned_cols=204  Identities=14%  Similarity=0.284  Sum_probs=153.4

Q ss_pred             cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      ++.++.+.+|...|+|++|  +|++||||+.||+|+|||+.+++++.++ .+|...|++++|+    +++|++|+.|+.|
T Consensus         5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l-~~H~~~V~~v~~~----~~~l~s~s~D~~i   77 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQYD----ERVIITGSSDSTV   77 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEECC----SSEEEEEETTSCE
T ss_pred             EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEeeeecc----cceeecccccccc
Confidence            4556667789999999775  7999999999999999999999999999 7999999999874    5799999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      ++|++..+.          .......+..  ....+.+ ....++++..++.+.+||.......                
T Consensus        78 ~~~~~~~~~----------~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------------  128 (293)
T d1p22a2          78 RVWDVNTGE----------MLNTLIHHCE--AVLHLRF-NNGMMVTCSKDRSIAVWDMASPTDI----------------  128 (293)
T ss_dssp             EEEESSSCC----------EEEEECCCCS--CEEEEEC-CTTEEEEEETTSCEEEEECSSSSCC----------------
T ss_pred             ccccccccc----------cccccccccc--ccccccc-cccceeecccccceeEeeccccccc----------------
Confidence            999998642          1222222222  2233444 4467889999999999998876532                


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (763)
                            ........+...+..+.+.+   ..+++++.|+.|++||+++++.+..+                    .++..
T Consensus       129 ------~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~--------------------~~~~~  179 (293)
T d1p22a2         129 ------TLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTL--------------------NGHKR  179 (293)
T ss_dssp             ------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEE--------------------ECCSS
T ss_pred             ------cccccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEE--------------------ccccc
Confidence                  01111234556777777776   47889999999999999987644332                    22322


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                       .+..+.++  +.+|++++.|+.|++||+.+.
T Consensus       180 -~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~  208 (293)
T d1p22a2         180 -GIACLQYR--DRLVVSGSSDNTIRLWDIECG  208 (293)
T ss_dssp             -CEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred             -ccccccCC--CCeEEEecCCCEEEEEecccc
Confidence             36666664  568999999999999998874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.8e-31  Score=283.86  Aligned_cols=244  Identities=16%  Similarity=0.134  Sum_probs=155.8

Q ss_pred             cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe------EEEEEccCCCCceEEEEEe---eCC--CCcEE
Q 004290           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFV---PET--SDELV  110 (763)
Q Consensus        42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~------~~~~~~~~h~~~V~~v~~~---p~~--~~~~l  110 (763)
                      .....++|.+.|.+|++++  ++|+|||.|++|+|||..+..      ..... ..|...+..+...   +..  ...++
T Consensus         6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLV   82 (393)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             eeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEee-eeccCCceEeeeEeeeccCCCCCcEE
Confidence            3456689999999999874  699999999999999976542      12222 2454444333322   211  13578


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC----CCEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290          111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN----PHVVWSASEDGTLRQHDFRQGSSCPPA  186 (763)
Q Consensus       111 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~  186 (763)
                      ++++.||.|++|++.....................+...+..++|.+..    ..++++++.||+|++||+.........
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            8999999999999875432110000000011112355667888887743    368899999999999998754321100


Q ss_pred             CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004290          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (763)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (763)
                      ..........+       .........+...+++++|+|+ + +||+|+.|++|+|||+++++.+..+...         
T Consensus       163 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~s~d-g-~lasgs~Dg~i~iwd~~~~~~~~~~~~~---------  224 (393)
T d1sq9a_         163 LTLNWSPTLEL-------QGTVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYNFESQ---------  224 (393)
T ss_dssp             TTTCCCCEEEE-------EEEECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEEEECC---------
T ss_pred             eeeeeccceec-------ccceecccCCCCcEEEEEECCC-C-EEEEEeCCCcEEEEeecccccccccccc---------
Confidence            00000000000       1112223344566889999997 3 8999999999999999987654332110         


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeCCC---eEEEEECCCCC
Q 004290          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAG  312 (763)
Q Consensus       267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~---~i~iwd~~~~~  312 (763)
                           ....+|.. +|++|+|+|+|++|++++.|+   .|++||+.++.
T Consensus       225 -----~~l~~h~~-~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~  267 (393)
T d1sq9a_         225 -----HSMINNSN-SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE  267 (393)
T ss_dssp             -----C---CCCC-CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred             -----cccccccc-eEEEcccccccceeeeecCCCCcceeeecccccce
Confidence                 11134555 699999999999999999986   59999999854

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.8e-30  Score=271.30  Aligned_cols=173  Identities=12%  Similarity=0.143  Sum_probs=135.2

Q ss_pred             eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE
Q 004290           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (763)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  162 (763)
                      +.+..+  .|...|.+++|+|+  +++|++|+ ||.|+|||+........     .......+|.+.|.+++|+| ++.+
T Consensus        43 ~~~~~~--~H~~~V~~v~fs~~--g~~latg~-dg~V~iWd~~~~~~~~~-----~~~~~~~~h~~~I~~v~~s~-dg~~  111 (337)
T d1gxra_          43 RQINTL--NHGEVVCAVTISNP--TRHVYTGG-KGCVKVWDISHPGNKSP-----VSQLDCLNRDNYIRSCKLLP-DGCT  111 (337)
T ss_dssp             EEEEEE--CCSSCCCEEEECSS--SSEEEEEC-BSEEEEEETTSTTCCSC-----SEEEECSCTTSBEEEEEECT-TSSE
T ss_pred             eEEEEC--CCCCcEEEEEECCC--CCEEEEEE-CCEEEEEEccCCcccce-----eEEeeecCCCCcEEEEEEcC-CCCE
Confidence            455555  79999999999999  79999987 89999999986432211     11233457999999999999 6689


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEE
Q 004290          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (763)
Q Consensus       163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~i  242 (763)
                      |++++.||.|++||+......                       .......|...+.+++|+|+ +.++++++.|+.|++
T Consensus       112 l~s~~~dg~i~iwd~~~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~  167 (337)
T d1gxra_         112 LIVGGEASTLSIWDLAAPTPR-----------------------IKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAV  167 (337)
T ss_dssp             EEEEESSSEEEEEECCCC--E-----------------------EEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEE
T ss_pred             EEEeecccccccccccccccc-----------------------cccccccccccccccccccc-ccccccccccccccc
Confidence            999999999999998765411                       11112345678899999997 689999999999999


Q ss_pred             EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ||+++++.....                    .+|.. .|++++|++++.++++++.|+.|++||++++
T Consensus       168 ~~~~~~~~~~~~--------------------~~~~~-~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~  215 (337)
T d1gxra_         168 WDLHNQTLVRQF--------------------QGHTD-GASCIDISNDGTKLWTGGLDNTVRSWDLREG  215 (337)
T ss_dssp             EETTTTEEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cccccccccccc--------------------ccccc-ccccccccccccccccccccccccccccccc
Confidence            999876432211                    23444 5999999999999999999999999998874

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=4.9e-31  Score=279.58  Aligned_cols=168  Identities=8%  Similarity=0.062  Sum_probs=134.8

Q ss_pred             CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc
Q 004290           92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT  171 (763)
Q Consensus        92 h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~  171 (763)
                      ...+|+|++|+|+  +.+|++|+.|+.|+|||+..++        ...+..+.+|.++|++|+|+| ++++|++++.|++
T Consensus         6 ~~~pIt~~~~s~d--g~~la~~~~~~~i~iw~~~~~~--------~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~   74 (371)
T d1k8kc_           6 LVEPISCHAWNKD--RTQIAICPNNHEVHIYEKSGNK--------WVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRN   74 (371)
T ss_dssp             CSSCCCEEEECTT--SSEEEEECSSSEEEEEEEETTE--------EEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSC
T ss_pred             CCCCeEEEEECCC--CCEEEEEeCCCEEEEEECCCCC--------EEEEEEecCCCCCEEEEEECC-CCCEEEEEECCCe
Confidence            3478999999999  7999999999999999997532        134677889999999999999 6689999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 004290          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (763)
Q Consensus       172 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~  251 (763)
                      |++||+.++..                       ........+...|.+++|+|+ ++.|++|+.|+.|++|++......
T Consensus        75 i~vWd~~~~~~-----------------------~~~~~~~~~~~~v~~i~~~p~-~~~l~~~s~d~~i~i~~~~~~~~~  130 (371)
T d1k8kc_          75 AYVWTLKGRTW-----------------------KPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQENDW  130 (371)
T ss_dssp             EEEEEEETTEE-----------------------EEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTTTE
T ss_pred             EEEEeeccccc-----------------------ccccccccccccccccccccc-cccceeecccCcceeeeeeccccc
Confidence            99999976541                       112223356778999999997 789999999999999998765432


Q ss_pred             cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ....                ....+|.. .|++++|+|++++|++++.|+.|++|++...
T Consensus       131 ~~~~----------------~~~~~~~~-~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~  173 (371)
T d1k8kc_         131 WVCK----------------HIKKPIRS-TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  173 (371)
T ss_dssp             EEEE----------------EECTTCCS-CEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             cccc----------------cccccccc-ccccccccccccceeccccCcEEEEEeeccC
Confidence            1110                01123444 5999999999999999999999999998773

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.1e-31  Score=273.83  Aligned_cols=221  Identities=14%  Similarity=0.114  Sum_probs=155.4

Q ss_pred             cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEE---EEEccCCCCceEEEEEeeCCCCcEEEEEeCC
Q 004290           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL---HSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~---~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d  116 (763)
                      ++++..+++|++.|++|+|+|++++||+|+.|++|+|||+.++...   ... .+|..+|.+++|+|+. +.+|++|+.|
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~-~~h~~~V~~v~f~~~~-~~~l~sg~~d   78 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNT-DLQIYVGTVQ   78 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESS-SEEEEEEETT
T ss_pred             CCeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEe-cCCCCCEEEEEEeCCC-CCEEEEcccc
Confidence            3567788999999999999999999999999999999999765432   222 3799999999999985 6789999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeeecccCcee-EEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (763)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  195 (763)
                      +.|++|++....          .......+...+. ...+.+ +...+++++.|+++++||++......          .
T Consensus        79 ~~v~~w~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~----------~  137 (342)
T d1yfqa_          79 GEILKVDLIGSP----------SFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGV----------I  137 (342)
T ss_dssp             SCEEEECSSSSS----------SEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBC----------E
T ss_pred             cceeeeeccccc----------cccccccccccccccccccc-ccccccccccccccceeeccccccce----------e
Confidence            999999998632          1333333433333 344444 67899999999999999998654220          0


Q ss_pred             EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (763)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (763)
                      ......         ............+.+. +..+++++.|+.|++||++...........                 .
T Consensus       138 ~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-----------------~  190 (342)
T d1yfqa_         138 AVKNLN---------SNNTKVKNKIFTMDTN-SSRLIVGMNNSQVQWFRLPLCEDDNGTIEE-----------------S  190 (342)
T ss_dssp             EEEESC---------SSSSSSCCCEEEEEEC-SSEEEEEESTTEEEEEESSCCTTCCCEEEE-----------------C
T ss_pred             eecccc---------cccccceeeeeeeecc-CCceeeecCCCcEEEEecccCcccceeeee-----------------c
Confidence            010000         0011122334556664 579999999999999999876543221100                 1


Q ss_pred             CCCccceeEEEEc-CCCCEEEEEeCCCeEEEEECCCC
Q 004290          276 GRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       276 g~~~~~i~~v~~s-pdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .... .+.++.+. .++..+++++.||.+.+|+....
T Consensus       191 ~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~  226 (342)
T d1yfqa_         191 GLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             SCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             cccc-ceeeeEeecCCCCEEEeecCCCeEEEEEecCC
Confidence            1111 25555554 56788999999999999998773

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-31  Score=273.17  Aligned_cols=191  Identities=16%  Similarity=0.156  Sum_probs=142.2

Q ss_pred             cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      .+++++|+||.++|++|+|+|    |+||+.||+|++||+.++.      .+|...|.+++|+++   ..+++++.|++|
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~------~~h~~~V~~~~~~~~---~~~~s~s~D~~v   69 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH------QDHSNLIVSLDNSKA---QEYSSISWDDTL   69 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE------CCCCSCEEEEECCST---TCCEEEETTTEE
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC------CCCCCCEEEEEecCC---CeEEEEeecccc
Confidence            478899999999999999997    9999999999999987642      589999999999876   578999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  199 (763)
                      ++|++...                 .+...+.++.+++ ++.+++ .+.++.+.+|+..+++..           . ...
T Consensus        70 ~~w~~~~~-----------------~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~-----------~-~~~  118 (287)
T d1pgua2          70 KVNGITKH-----------------EFGSQPKVASANN-DGFTAV-LTNDDDLLILQSFTGDII-----------K-SVR  118 (287)
T ss_dssp             EETTEEEE-----------------ECSSCEEEEEECS-SSEEEE-EETTSEEEEEETTTCCEE-----------E-EEE
T ss_pred             cccccccc-----------------ccccceeeeeecc-CCceEE-Eeecccceeeeccceeee-----------e-ecc
Confidence            99998741                 1234577788887 445554 456678899998776521           0 000


Q ss_pred             cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC-CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (763)
                                    ....  ..+++|+ +..+++++.| +.+++|++...+....+.                   ..+.
T Consensus       119 --------------~~~~--~~~~~~~-~~~~~v~~~~~~~v~~~~~~~~~~~~~~~-------------------~~~~  162 (287)
T d1pgua2         119 --------------LNSP--GSAVSLS-QNYVAVGLEEGNTIQVFKLSDLEVSFDLK-------------------TPLR  162 (287)
T ss_dssp             --------------CSSC--EEEEEEC-SSEEEEEETTTSCEEEEETTEEEEEEECS-------------------SCCS
T ss_pred             --------------ccce--eeeeecc-Ccceeeeccccceeeeeeccccceeeeee-------------------eccC
Confidence                          0112  3455665 4577777766 479999987543211110                   1122


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      . .+++++|+|++.+|++++.|+.|++||+.++
T Consensus       163 ~-~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~  194 (287)
T d1pgua2         163 A-KPSYISISPSETYIAAGDVMGKILLYDLQSR  194 (287)
T ss_dssp             S-CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             C-ceeEEEeccCccccccccccccccceeeccc
Confidence            2 5999999999999999999999999999874

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.8e-30  Score=274.00  Aligned_cols=242  Identities=20%  Similarity=0.302  Sum_probs=179.1

Q ss_pred             cccccccchhhhhccccceee------------------ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 004290           26 VNHSLQMHSSLVRRLSQEREL------------------EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS   87 (763)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l------------------~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~   87 (763)
                      .++.|++|+  +.+.+.+..+                  .+|...|++|+|+|+|++|++|+.||.|++||..+++.+..
T Consensus        81 ~d~~i~iW~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~  158 (388)
T d1erja_          81 CNKTTQVYR--VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI  158 (388)
T ss_dssp             CBSCEEEEE--TTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             eCCeEEEEE--ecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccc
Confidence            377888987  3444444443                  35677899999999999999999999999999999999988


Q ss_pred             EccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe
Q 004290           88 IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  167 (763)
Q Consensus        88 ~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s  167 (763)
                      + .+|...|.++.|+++  +..+++++.++.|++||....          ...... .+.....++.+.+.++.+|++++
T Consensus       159 ~-~~h~~~v~~~~~~~~--~~~~~~~~~~~~i~~~d~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~  224 (388)
T d1erja_         159 L-QGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRTG----------QCSLTL-SIEDGVTTVAVSPGDGKYIAAGS  224 (388)
T ss_dssp             E-CCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTT----------EEEEEE-ECSSCEEEEEECSTTCCEEEEEE
T ss_pred             c-ccccccccccccccc--cccccccccceeeeeeecccc----------cccccc-ccccccccccccCCCCCeEEEEc
Confidence            8 799999999999998  799999999999999999863          223333 45566777788887889999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                      .||.|++||++++...           ..+   .    .......+|...|.+++|+|+ +.+|++|+.|+.|++||+++
T Consensus       225 ~d~~i~i~~~~~~~~~-----------~~~---~----~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~d~~i~iwd~~~  285 (388)
T d1erja_         225 LDRAVRVWDSETGFLV-----------ERL---D----SENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQN  285 (388)
T ss_dssp             TTSCEEEEETTTCCEE-----------EEE---C----------CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEEC--
T ss_pred             CCCeEEEeecccCccc-----------eee---c----cccccccCCCCCEEEEEECCC-CCEEEEEECCCcEEEEeccC
Confidence            9999999999887532           000   0    011223457788999999997 78999999999999999998


Q ss_pred             CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +............ .+..       ....|.. .|++++|+|++++|++|+.||.|++||+.++
T Consensus       286 ~~~~~~~~~~~~~-~~~~-------~~~~~~~-~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~  340 (388)
T d1erja_         286 ANNKSDSKTPNSG-TCEV-------TYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSG  340 (388)
T ss_dssp             --------------CEEE-------EEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             Ccccccccccccc-ceee-------ecccccc-eEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            7644322111110 0010       1123444 5999999999999999999999999998874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1e-29  Score=271.57  Aligned_cols=94  Identities=14%  Similarity=0.214  Sum_probs=86.0

Q ss_pred             EEeeecccccceeeeecccCCCCEEEEecCCCc---EEEEEcCcCcEEEEEe-------------cCCcceEEEEeeCCC
Q 004290          618 RYVGHCNVGTDIKQASFLGQRGDYIASGSDDGR---WFIWEKQTGRLIKMLL-------------GDEAVVNCVQCHPFD  681 (763)
Q Consensus       618 ~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~---i~iWd~~tg~~~~~l~-------------gH~~~V~~v~~sp~~  681 (763)
                      .+.+|.+.|.+++    |+|||++|++||.|++   |+|||+++++++..|.             ||.+.|++|+|+|++
T Consensus       226 ~l~~h~~~V~~l~----~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~  301 (393)
T d1sq9a_         226 SMINNSNSIRSVK----FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG  301 (393)
T ss_dssp             ---CCCCCEEEEE----ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred             ccccccceEEEcc----cccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC
Confidence            5678999999888    9999999999999975   9999999999999885             899999999999999


Q ss_pred             CeEEEEeCCCcEEEEcCCCCCCccccCCCCCCCh
Q 004290          682 CVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT  715 (763)
Q Consensus       682 ~~laS~s~D~~IrvW~~~~~~~~~~~~g~~~~~~  715 (763)
                      ++|||+|.|++|||||+.+++++.++.||.+++.
T Consensus       302 ~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         302 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred             CeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence            9999999999999999999999999999998874

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.8e-29  Score=257.25  Aligned_cols=226  Identities=12%  Similarity=0.124  Sum_probs=177.1

Q ss_pred             cccchhhhhccccceeecccc-CceEEEEeCC--CCCEEEEEeCCCcEEEEeCCCCeE--------EEEEccCCCCceEE
Q 004290           30 LQMHSSLVRRLSQERELEGHQ-GCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKL--------LHSIETGHSANVFC   98 (763)
Q Consensus        30 ~~~~~~~~~~~~~~~~l~gH~-~~V~~l~fsp--~g~~Lasgs~D~~v~iWd~~~~~~--------~~~~~~~h~~~V~~   98 (763)
                      ++.++....+...+..+.+|. ..|++++|+|  +|.+||+|+.||+|+|||+..++.        ...+ ..|.++|.+
T Consensus        42 i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~-~~~~~~v~~  120 (325)
T d1pgua1          42 VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISD  120 (325)
T ss_dssp             EEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEE
T ss_pred             EEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccccc-ccccCcEEE
Confidence            455655556667778889985 6799999998  678999999999999999865321        1223 578899999


Q ss_pred             EEEeeCCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004290           99 TKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (763)
Q Consensus        99 v~~~p~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd  176 (763)
                      ++|+|+  +.+|++++.  ++.+++|+..++          .++..+.+|...|.+++|+|+++.++++++.|+.|++||
T Consensus       121 v~~s~~--~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d  188 (325)
T d1pgua1         121 ISWDFE--GRRLCVVGEGRDNFGVFISWDSG----------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ  188 (325)
T ss_dssp             EEECTT--SSEEEEEECCSSCSEEEEETTTC----------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEE
T ss_pred             EEECCC--CCccceeeccccceEEEEeeccc----------ccceeeeecccccccccccccccceEEEeeccccccccc
Confidence            999999  688877764  678999999863          347788899999999999997777888999999999999


Q ss_pred             CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCC
Q 004290          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (763)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~  256 (763)
                      +...+..                      ..+.....+...|.+++|+|+.+.+|++++.|+.|++||+++++.+..+. 
T Consensus       189 ~~~~~~~----------------------~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-  245 (325)
T d1pgua1         189 GPPFKFS----------------------ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-  245 (325)
T ss_dssp             TTTBEEE----------------------EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC-
T ss_pred             ccccccc----------------------eecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc-
Confidence            8765411                      12233446778899999999878899999999999999999876544331 


Q ss_pred             CCCCCCcccccccccccCCCCCccceeEEEEc---CCCCEEEEEeCCCeEEEEECCCC
Q 004290          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS---PNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s---pdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                                         +|.. ++..+.|+   |+|++|++++.|+.|+|||+.++
T Consensus       246 -------------------~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         246 -------------------DDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             -------------------BTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred             -------------------cccc-ccccceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence                               1222 24444444   68999999999999999999874

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=1.5e-28  Score=251.49  Aligned_cols=165  Identities=11%  Similarity=0.133  Sum_probs=122.8

Q ss_pred             CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceee-ecccCceeEEEEecCCC
Q 004290           82 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNP  160 (763)
Q Consensus        82 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~  160 (763)
                      |+..+.+ .||...|++++|+|+  +++|+||+.||+|++||+.++.          +...+ ..|...|.+++|+| ++
T Consensus         2 g~~~~~~-~GH~~~V~~l~~s~d--g~~l~s~s~Dg~v~vWd~~~~~----------~~~~~~~~h~~~v~~v~~~~-~g   67 (299)
T d1nr0a2           2 GSIDQVR-YGHNKAITALSSSAD--GKTLFSADAEGHINSWDISTGI----------SNRVFPDVHATMITGIKTTS-KG   67 (299)
T ss_dssp             TEEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCC----------EEECSSCSCSSCEEEEEECT-TS
T ss_pred             CccceEc-CCCCCCcEEEEECCC--CCEEEEEcCCCeEEEEECCCCc----------EEEEEcCCCCCcEEEEEeec-cc
Confidence            4555666 899999999999999  7999999999999999998632          24444 46899999999999 44


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004290          161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (763)
Q Consensus       161 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i  240 (763)
                      .+ ++++.|+.+++|++.........                      .....+...+.+++|+|+ +.+++++ .++.+
T Consensus        68 ~~-~~~~~d~~v~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~s~~-g~~~~~~-~~~~i  122 (299)
T d1nr0a2          68 DL-FTVSWDDHLKVVPAGGSGVDSSK----------------------AVANKLSSQPLGLAVSAD-GDIAVAA-CYKHI  122 (299)
T ss_dssp             CE-EEEETTTEEEEECSSSSSSCTTS----------------------CCEEECSSCEEEEEECTT-SSCEEEE-ESSEE
T ss_pred             ee-ecccceeeEEEeccCCccccccc----------------------cccccccccccccccccc-ccccccc-ccccc
Confidence            54 57778999999998765421000                      000123456789999997 5655554 56789


Q ss_pred             EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      ++|+.......                         .....+++++|+|++++|++++.|+.|++||+.+
T Consensus       123 ~~~~~~~~~~~-------------------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~  167 (299)
T d1nr0a2         123 AIYSHGKLTEV-------------------------PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG  167 (299)
T ss_dssp             EEEETTEEEEE-------------------------ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred             ccccccccccc-------------------------cccccccccccccccccccccccccccccccccc
Confidence            99986532100                         0011488999999999999999999999999876

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1e-27  Score=249.36  Aligned_cols=171  Identities=14%  Similarity=0.203  Sum_probs=130.2

Q ss_pred             eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE
Q 004290           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (763)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  162 (763)
                      +..+++ .||.+.|++++|+|+  +.+|+||+.||+|+|||+.++          ..+..+..|...|.+++|+| ++.+
T Consensus        46 ~~~~tL-~GH~~~I~~l~~s~~--~~~l~sgs~Dg~v~iWd~~~~----------~~~~~~~~~~~~v~~v~~~~-~~~~  111 (340)
T d1tbga_          46 RTRRTL-RGHLAKIYAMHWGTD--SRLLVSASQDGKLIIWDSYTT----------NKVHAIPLRSSWVMTCAYAP-SGNY  111 (340)
T ss_dssp             CEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTTEEEEEETTTT----------EEEEEEECSCSCEEEEEECT-TSSE
T ss_pred             eeeEEE-CCCCCCEEEEEECCC--CCEEEEEECCCceeeeecccc----------eeEEEEecccccEEeeEeec-ccee
Confidence            344566 899999999999999  799999999999999999873          44778889999999999999 6689


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEE
Q 004290          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (763)
Q Consensus       163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~i  242 (763)
                      +++++.|+.+++|+........                     .......++...........  ...++....|.....
T Consensus       112 l~~~~~d~~i~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  168 (340)
T d1tbga_         112 VACGGLDNICSIYNLKTREGNV---------------------RVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCAL  168 (340)
T ss_dssp             EEEEETTCCEEEEESSSSCSCC---------------------CEEEEECCCSSCEEEEEEEE--TTEEEEEETTTEEEE
T ss_pred             eeeecccceeeccccccccccc---------------------ccceeccccccccccccccc--ccccccccccccccc
Confidence            9999999999999987654220                     00111123344444555554  358888899999999


Q ss_pred             EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ++..........                    ..+.. .+....+.+.+.++++++.|+.|++||+.++
T Consensus       169 ~~~~~~~~~~~~--------------------~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~  216 (340)
T d1tbga_         169 WDIETGQQTTTF--------------------TGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREG  216 (340)
T ss_dssp             EETTTTEEEEEE--------------------ECCSS-CEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             cccccccccccc--------------------cccce-eEeeeccccccceeEEeecCceEEEEECCCC
Confidence            988754321110                    11222 5889999999999999999999999998773

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.2e-28  Score=252.65  Aligned_cols=199  Identities=18%  Similarity=0.200  Sum_probs=129.5

Q ss_pred             EEccCCCCce-EEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEE
Q 004290           87 SIETGHSANV-FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  165 (763)
Q Consensus        87 ~~~~~h~~~V-~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s  165 (763)
                      ++ .||...| +|++|  +  +++|+||+.||+|+|||+.++          +++..+.+|.+.|++|+|+| + .+|++
T Consensus         7 tL-~GH~~~vitc~~~--~--~~~l~tgs~Dg~i~vWd~~~~----------~~~~~l~~H~~~V~~l~~s~-~-~~l~s   69 (355)
T d1nexb2           7 TL-RGHMTSVITCLQF--E--DNYVITGADDKMIRVYDSINK----------KFLLQLSGHDGGVWALKYAH-G-GILVS   69 (355)
T ss_dssp             EE-ECCSSSCEEEEEE--E--TTEEEEEETTTEEEEEETTTT----------EEEEEEECCSSCEEEEEEET-T-TEEEE
T ss_pred             EE-CCcCCCcEEEEEE--C--CCEEEEEeCCCeEEEEECCCC----------cEEEEEECCCCCEEEEEEcC-C-CEEEE
Confidence            45 7998886 56555  4  579999999999999999863          45788999999999999998 4 58999


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeC
Q 004290          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (763)
Q Consensus       166 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~  245 (763)
                      ++.|++|++|++...+..                       .......+......+.+.++ +.++++++.|+.|++||+
T Consensus        70 ~s~D~~i~iw~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~iw~~  125 (355)
T d1nexb2          70 GSTDRTVRVWDIKKGCCT-----------------------HVFEGHNSTVRCLDIVEYKN-IKYIVTGSRDNTLHVWKL  125 (355)
T ss_dssp             EETTCCEEEEETTTTEEE-----------------------EEECCCSSCEEEEEEEEETT-EEEEEEEETTSEEEEEEC
T ss_pred             Eecccccccccccccccc-----------------------cccccccccccccccccccc-cceeeeecCCCcEEEEEc
Confidence            999999999999876521                       01111223344566677786 689999999999999999


Q ss_pred             CCCCCCcccCCCCCCCCccccccccc-----ccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeec
Q 004290          246 RMLPPLTSCQKRMSPPPCVNYFCPMH-----LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV  320 (763)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~  320 (763)
                      ++...............  ....+..     .....|.   .....+.+++++++++..|+.|++||+.+++........
T Consensus       126 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  200 (355)
T d1nexb2         126 PKESSVPDHGEEHDYPL--VFHTPEENPYFVGVLRGHM---ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH  200 (355)
T ss_dssp             CC-----------CCCE--EESCTTTCTTEEEEEECCS---SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             cCCceeccccccceecc--ceeccccccceeeeeeecc---ccccccccccceeeeecccceeeeeecccccceeeeecc
Confidence            88765433221111000  0000000     0001111   122346678899999999999999999986544333334


Q ss_pred             CCCCeeeeecc
Q 004290          321 GDASKIMSFTP  331 (763)
Q Consensus       321 ~~~~~~~~~~p  331 (763)
                      ........++|
T Consensus       201 ~~~~~~~~~~~  211 (355)
T d1nexb2         201 TDRIYSTIYDH  211 (355)
T ss_dssp             SSCEEEEEEET
T ss_pred             ccccccccccc
Confidence            44444455554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=9.2e-28  Score=252.13  Aligned_cols=191  Identities=11%  Similarity=0.089  Sum_probs=149.8

Q ss_pred             EEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC--cEEEEECCCCCCCC
Q 004290           55 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRG  131 (763)
Q Consensus        55 ~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg--~I~iwd~~~~~~~~  131 (763)
                      .-.||| ||+++|+++. |.|++||+.++..++ +  +|...|.+++|+|+  ++.|++++.+.  .|++||+..+.   
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~-~--~~~~~v~~~~~spD--g~~l~~~~~~~g~~v~v~d~~~~~---   77 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGK---   77 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEEE-C--SCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCC---
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEEE-c--cCCCCEEEEEECCC--CCEEEEEEcCCCCEEEEEECCCCc---
Confidence            457999 9999999875 799999998887654 3  69999999999999  78888766553  79999998632   


Q ss_pred             CCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCC
Q 004290          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (763)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (763)
                              ...+..|...|.+++|+| ++++|++++.++.+++|++.+++..            ..             .
T Consensus        78 --------~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~------------~~-------------~  123 (360)
T d1k32a3          78 --------AEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPT------------VI-------------E  123 (360)
T ss_dssp             --------EEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE------------EE-------------E
T ss_pred             --------EEEeeCCCceEEeeeecc-cccccceecccccccccccccccee------------ee-------------e
Confidence                    566778999999999999 6789999999999999999877521            11             1


Q ss_pred             CCCccceEEEEEeCCCCcEEEEEe----------CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccc
Q 004290          212 PKQTLSLKSCDISSTRPHLLLVGG----------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (763)
Q Consensus       212 ~~~~~~v~~i~~~p~~~~~l~sgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  281 (763)
                      ..+...+.+++|+|+ +++|+.+.          .++.+++||+.+++....                     ..+.. .
T Consensus       124 ~~~~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~---------------------~~~~~-~  180 (360)
T d1k32a3         124 RSREAMITDFTISDN-SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA---------------------TTENS-H  180 (360)
T ss_dssp             ECSSSCCCCEEECTT-SCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC---------------------SCSSS-B
T ss_pred             ecccccccchhhccc-eeeeeeeccccccceeeccccceeeeccccCceeee---------------------ccccc-c
Confidence            124456788999997 67887543          445699999987642211                     11222 4


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       282 i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      +..++|+|||++|++++.++.+.+|+....
T Consensus       181 ~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         181 DYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             EEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             cccccccCCCCEEEEEeCCCceEccccccc
Confidence            888999999999999999999999997664

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=8.7e-26  Score=233.84  Aligned_cols=175  Identities=10%  Similarity=0.075  Sum_probs=126.3

Q ss_pred             EccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe
Q 004290           88 IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  167 (763)
Q Consensus        88 ~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s  167 (763)
                      +.++|...|++|+|+|+  +++|++|+.||+|+|||+......       ..+....+|..+|.+++|+|+++.+|++|+
T Consensus         6 ~~~~h~d~I~~l~fsp~--~~~L~s~s~Dg~v~iwd~~~~~~~-------~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~   76 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQAKN-------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             CSSCCSSCEEEEEEEGG--GTEEEEEETTSEEEEEEEETTTTE-------EEEEEEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred             cCCCCCCCEEEEEEeCC--CCEEEEEECCCeEEEEEccCCCcc-------eEEEEecCCCCCEEEEEEeCCCCCEEEEcc
Confidence            45899999999999999  799999999999999999864321       113334469999999999997778999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                      .||.|++|++........                        ....+........+.+. ...+++++.|+.+++||++.
T Consensus        77 ~d~~v~~w~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~  131 (342)
T d1yfqa_          77 VQGEILKVDLIGSPSFQA------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             TTSCEEEECSSSSSSEEE------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHH
T ss_pred             cccceeeeeccccccccc------------------------ccccccccccccccccc-cccccccccccccceeeccc
Confidence            999999999987653200                        00011222334444554 67999999999999999986


Q ss_pred             CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      .........              ..... ..........+.+++..+++++.|+.|++|++...
T Consensus       132 ~~~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  180 (342)
T d1yfqa_         132 YGDGVIAVK--------------NLNSN-NTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC  180 (342)
T ss_dssp             HTTBCEEEE--------------ESCSS-SSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCC
T ss_pred             cccceeeec--------------ccccc-cccceeeeeeeeccCCceeeecCCCcEEEEecccC
Confidence            543322110              00000 11113556778888999999999999999999874

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.2e-26  Score=234.42  Aligned_cols=88  Identities=20%  Similarity=0.246  Sum_probs=73.9

Q ss_pred             EeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEe
Q 004290           77 WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE  156 (763)
Q Consensus        77 Wd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  156 (763)
                      |+..+.+....+ .||...|.+ +++++  |++|+||+.||+|+|||+.++          +++..+.+|.+.|.+++|+
T Consensus         1 W~~~~~~~~~~l-~GH~~~V~s-~~~~~--g~~l~sgs~Dg~i~vWd~~~~----------~~~~~~~~h~~~V~~v~~~   66 (342)
T d2ovrb2           1 WRRGELKSPKVL-KGHDDHVIT-CLQFC--GNRIVSGSDDNTLKVWSAVTG----------KCLRTLVGHTGGVWSSQMR   66 (342)
T ss_dssp             HHHSCCCCCEEE-ECSTTSCEE-EEEEE--TTEEEEEETTSCEEEEETTTC----------CEEEECCCCSSCEEEEEEE
T ss_pred             CCCCCCCcCEEE-CCcCCceEE-EEEEC--CCEEEEEeCCCeEEEEECCCC----------CEEEEEeCCCCCEEEEEeC
Confidence            555556666677 799999865 36666  789999999999999999863          4578899999999999998


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCC
Q 004290          157 VGNPHVVWSASEDGTLRQHDFRQGS  181 (763)
Q Consensus       157 p~~~~~l~s~s~dg~i~iwd~~~~~  181 (763)
                      |   .+|++++.|+.+++|+.....
T Consensus        67 ~---~~l~s~s~D~~~~~~~~~~~~   88 (342)
T d2ovrb2          67 D---NIIISGSTDRTLKVWNAETGE   88 (342)
T ss_dssp             T---TEEEEEETTSCEEEEETTTTE
T ss_pred             C---Cccccceeccccccccccccc
Confidence            7   489999999999999988764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=2.3e-24  Score=232.20  Aligned_cols=212  Identities=10%  Similarity=0.017  Sum_probs=136.7

Q ss_pred             eCCCC--CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004290           58 WNSKG--SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  135 (763)
Q Consensus        58 fsp~g--~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~  135 (763)
                      ++.|.  -++++.+.||+|+|||+.+++.+.++ ..| ..+..++|+|+  |++|++++.|++|++||+.+++....   
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l-~~g-~~~~~vafSPD--Gk~l~~~~~d~~v~vwd~~t~~~~~~---   98 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI-DTG-YAVHISRMSAS--GRYLLVIGRDARIDMIDLWAKEPTKV---   98 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEE-ECC-SSEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCEEE---
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEE-eCC-CCeeEEEECCC--CCEEEEEeCCCCEEEEEccCCceeEE---
Confidence            44443  35678889999999999999999999 455 45899999999  89999999999999999987542110   


Q ss_pred             CCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCc
Q 004290          136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT  215 (763)
Q Consensus       136 ~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (763)
                        ..+....+|.+.+.+++|+|++..+++++..++.+++||..+....            ..........  ........
T Consensus        99 --~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~------------~~~~~~~~~~--~~~~~~~~  162 (426)
T d1hzua2          99 --AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK------------QIVSTRGMTV--DTQTYHPE  162 (426)
T ss_dssp             --EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE------------EEEECCEECS--SSCCEESC
T ss_pred             --EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcccee------------EEeeccCCCc--cceeecCC
Confidence              1122334567777788888955445667778999999999887632            1111000000  00000112


Q ss_pred             cceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEE
Q 004290          216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL  295 (763)
Q Consensus       216 ~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~  295 (763)
                      .....+.+++++..++.+....+.+.+++......+..           ..        .++.. .+..+.|+|++++++
T Consensus       163 ~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~-----------~~--------~~~~~-~~~~~~~~~~g~~~~  222 (426)
T d1hzua2         163 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV-----------TS--------IGAAP-FLADGGWDSSHRYFM  222 (426)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEE-----------EE--------EECCS-SEEEEEECTTSCEEE
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEeccccceee-----------EE--------eccCC-ccEeeeECCCCcEEE
Confidence            23455666666433333334445566666554322110           00        01112 488999999999988


Q ss_pred             EEeC-CCeEEEEECCCCC
Q 004290          296 LSYS-GEHVYLMDVNHAG  312 (763)
Q Consensus       296 ~~s~-d~~i~iwd~~~~~  312 (763)
                      ++.. +..+.+|+..++.
T Consensus       223 ~a~~~~~~~~~~~~~~~~  240 (426)
T d1hzua2         223 TAANNSNKVAVIDSKDRR  240 (426)
T ss_dssp             EEETTCSEEEEEETTTTE
T ss_pred             eeeecccceeeeeccccc
Confidence            8876 6789999999865

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1e-24  Score=221.41  Aligned_cols=147  Identities=16%  Similarity=0.141  Sum_probs=110.4

Q ss_pred             CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCC
Q 004290           82 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH  161 (763)
Q Consensus        82 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  161 (763)
                      .+.++++ .+|..+|++++|+|      |+||+.||+|++||+.+               ...+|...|.++++++ + .
T Consensus         3 ~~~i~~l-~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~---------------~~~~h~~~V~~~~~~~-~-~   58 (287)
T d1pgua2           3 DEVLKTI-SGHNKGITALTVNP------LISGSYDGRIMEWSSSS---------------MHQDHSNLIVSLDNSK-A-Q   58 (287)
T ss_dssp             EEEEEEE-CCCSSCEEEEETTT------TEEEETTSCEEETTTTE---------------EECCCCSCEEEEECCS-T-T
T ss_pred             cceeEEE-CCCCCceEEEEECc------EEEEeCCCeEEEEECCC---------------CCCCCCCCEEEEEecC-C-C
Confidence            4677788 89999999999964      89999999999999874               2357999999999987 4 4


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEE
Q 004290          162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  241 (763)
Q Consensus       162 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~  241 (763)
                      .+++++.|++|++|++...+.                                ...+..++++++ + .+++.+.++.+.
T Consensus        59 ~~~s~s~D~~v~~w~~~~~~~--------------------------------~~~~~~~~~~~~-~-~~~~~~~~~~~~  104 (287)
T d1pgua2          59 EYSSISWDDTLKVNGITKHEF--------------------------------GSQPKVASANND-G-FTAVLTNDDDLL  104 (287)
T ss_dssp             CCEEEETTTEEEETTEEEEEC--------------------------------SSCEEEEEECSS-S-EEEEEETTSEEE
T ss_pred             eEEEEeecccccccccccccc--------------------------------ccceeeeeeccC-C-ceEEEeecccce
Confidence            678999999999999765431                                124567788885 4 555556777889


Q ss_pred             EEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC-eEEEEECCC
Q 004290          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-HVYLMDVNH  310 (763)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~-~i~iwd~~~  310 (763)
                      +|+..++..+..+.                     .   .....+++|++..+++++.++ .|++|++..
T Consensus       105 ~~~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~  150 (287)
T d1pgua2         105 ILQSFTGDIIKSVR---------------------L---NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSD  150 (287)
T ss_dssp             EEETTTCCEEEEEE---------------------C---SSCEEEEEECSSEEEEEETTTSCEEEEETTE
T ss_pred             eeeccceeeeeecc---------------------c---cceeeeeeccCcceeeeccccceeeeeeccc
Confidence            99988765432221                     0   123356778888888888864 799999865

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-23  Score=212.37  Aligned_cols=219  Identities=16%  Similarity=0.270  Sum_probs=167.8

Q ss_pred             CCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEE
Q 004290           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF  101 (763)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~  101 (763)
                      .+...|+.|++|+  +.+.+++++|++|.+.|++|+|  ++++|++|+.|+.|++|++..+...... ..+....  ..+
T Consensus        29 ~sgs~Dg~i~vWd--~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~-~~~~~~~--~~~  101 (293)
T d1p22a2          29 VSGLRDNTIKIWD--KNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAV--LHL  101 (293)
T ss_dssp             EEEESSSCEEEEE--SSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE-CCCCSCE--EEE
T ss_pred             EEEeCCCeEEEEE--CCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccc-ccccccc--ccc
Confidence            3467789999998  5778899999999999999987  5789999999999999999999887776 3333332  334


Q ss_pred             eeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (763)
Q Consensus       102 ~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~  181 (763)
                      .+.  ...++++..++.+.+|+.......       .....+..|...|..+.+.+   ..+++++.|+.|++||+++.+
T Consensus       102 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~  169 (293)
T d1p22a2         102 RFN--NGMMVTCSKDRSIAVWDMASPTDI-------TLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCE  169 (293)
T ss_dssp             ECC--TTEEEEEETTSCEEEEECSSSSCC-------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCC
T ss_pred             ccc--ccceeecccccceeEeeccccccc-------cccccccccccccccceecc---cccccccCCCceeeecCCCCc
Confidence            444  478999999999999999864321       23455677888898888865   578899999999999998875


Q ss_pred             CCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC
Q 004290          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (763)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (763)
                      ..                         ....++...+..+.+++   .++++++.|+.|++||+++...+...       
T Consensus       170 ~~-------------------------~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~-------  214 (293)
T d1p22a2         170 FV-------------------------RTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVL-------  214 (293)
T ss_dssp             EE-------------------------EEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEE-------
T ss_pred             EE-------------------------EEEcccccccccccCCC---CeEEEecCCCEEEEEecccceeeeee-------
Confidence            21                         11123445677777765   58999999999999999986543322       


Q ss_pred             CcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                                   .++.. .+.  .+++++.+|++++.||.|++||+..
T Consensus       215 -------------~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~  247 (293)
T d1p22a2         215 -------------EGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVA  247 (293)
T ss_dssp             -------------CCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHH
T ss_pred             -------------cccce-eee--eccccceEEEEEcCCCEEEEEECCC
Confidence                         22332 354  4667889999999999999999876

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.9e-23  Score=224.63  Aligned_cols=207  Identities=10%  Similarity=-0.007  Sum_probs=145.1

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCcee
Q 004290           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL  142 (763)
Q Consensus        63 ~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  142 (763)
                      -++++.+.|++|.|||..+++++..+. .+ ..+..++|+|+  |++|++++.|++|++||+.+.+....     ..+..
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~-~g-~~~~~v~fSpD--G~~l~~~s~dg~v~~~d~~t~~~~~~-----~~i~~  103 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLD-TG-YAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEPTTV-----AEIKI  103 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEE-CS-SCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCCEE-----EEEEC
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEe-CC-CCeeEEEECCC--CCEEEEEcCCCCEEEEEeeCCCceEE-----EEEec
Confidence            346899999999999999999999994 44 36999999999  89999999999999999987542110     11233


Q ss_pred             eecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEE
Q 004290          143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD  222 (763)
Q Consensus       143 ~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  222 (763)
                      ...|.+.+.+..|+|++..++++++.++.|++||..+++...           .+ ....  ................+.
T Consensus       104 ~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~-----------~~-~~~~--~~~~~~~~~~~~~~~~v~  169 (432)
T d1qksa2         104 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK-----------IQ-STRG--MTYDEQEYHPEPRVAAIL  169 (432)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE-----------EE-ECCE--ECTTTCCEESCCCEEEEE
T ss_pred             CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccccee-----------ee-ccCC--ccccceeccCCCceeEEE
Confidence            345666677777888554456889999999999999876321           11 0000  000000111234567889


Q ss_pred             EeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC
Q 004290          223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE  301 (763)
Q Consensus       223 ~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~  301 (763)
                      ++|++..++++...++.|.+||..+.+.....           .+         ..+..+..++|+|+|+++++++. ++
T Consensus       170 ~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~-----------~i---------~~g~~~~~~~~spdg~~~~va~~~~~  229 (432)
T d1qksa2         170 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTT-----------EI---------SAERFLHDGGLDGSHRYFITAANARN  229 (432)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEETTCSSEEEEE-----------EE---------ECCSSEEEEEECTTSCEEEEEEGGGT
T ss_pred             ECCCCCEEEEEEccCCeEEEEEccCCCcceEE-----------EE---------cccCccccceECCCCCEEEEeccccc
Confidence            99986556677778899999998875422110           00         11114788999999999888876 67


Q ss_pred             eEEEEECCCCC
Q 004290          302 HVYLMDVNHAG  312 (763)
Q Consensus       302 ~i~iwd~~~~~  312 (763)
                      .+.++|..+..
T Consensus       230 ~v~v~d~~~~~  240 (432)
T d1qksa2         230 KLVVIDTKEGK  240 (432)
T ss_dssp             EEEEEETTTTE
T ss_pred             eEEEeecccce
Confidence            89999998844

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=3.7e-21  Score=201.07  Aligned_cols=176  Identities=9%  Similarity=0.070  Sum_probs=136.8

Q ss_pred             cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC
Q 004290           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~--~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~  105 (763)
                      ..+.+|+.  +....++ + +|...|++++|+|||++|++++.+.  .|++||.++++.. .+ ..|...|.+++|+|+ 
T Consensus        24 g~v~v~d~--~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~-~~~~~~v~~~~~spd-   96 (360)
T d1k32a3          24 GQAFIQDV--SGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KF-EENLGNVFAMGVDRN-   96 (360)
T ss_dssp             TEEEEECT--TSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-EC-CCCCCSEEEEEECTT-
T ss_pred             CeEEEEEC--CCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Ee-eCCCceEEeeeeccc-
Confidence            46677763  3333333 3 6999999999999999998876553  7999999987765 44 589999999999999 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe----------CCCcEEEE
Q 004290          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS----------EDGTLRQH  175 (763)
Q Consensus       106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s----------~dg~i~iw  175 (763)
                       +++|++++.++.+++|++...          .....+..|...+.+++|+| ++.+|+.++          .++.+++|
T Consensus        97 -g~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~  164 (360)
T d1k32a3          97 -GKFAVVANDRFEIMTVDLETG----------KPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVY  164 (360)
T ss_dssp             -SSEEEEEETTSEEEEEETTTC----------CEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             -ccccceecccccccccccccc----------ceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeee
Confidence             799999999999999999863          33567778899999999999 557776543          34568899


Q ss_pred             ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      |+.+++..                       .   ...+...+..++|+|+ +++|++++.++.+++||.....
T Consensus       165 d~~~~~~~-----------------------~---~~~~~~~~~~~~~spd-g~~l~~~s~~~~~~~~d~~~~~  211 (360)
T d1k32a3         165 DMEGRKIF-----------------------A---ATTENSHDYAPAFDAD-SKNLYYLSYRSLDPSPDRVVLN  211 (360)
T ss_dssp             ETTTTEEE-----------------------E---CSCSSSBEEEEEECTT-SCEEEEEESCCCCCEECSSSSC
T ss_pred             ccccCcee-----------------------e---ecccccccccccccCC-CCEEEEEeCCCceEcccccccc
Confidence            98776421                       0   1123456788999997 7899999999999999987543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=4.2e-20  Score=187.68  Aligned_cols=183  Identities=16%  Similarity=0.185  Sum_probs=134.3

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEE-EEEeCCCcEEEEECCCCCCCCCCCCCCCCceee
Q 004290           65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY  143 (763)
Q Consensus        65 Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  143 (763)
                      .++++.|++|.|||+.+++.+.++.  ....+..++|+|+  |++| ++++.++.|++||+.+.          +.+..+
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~--~g~~p~~va~spd--G~~l~v~~~~~~~i~v~d~~t~----------~~~~~~   70 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIP--VGSNPMGAVISPD--GTKVYVANAHSNDVSIIDTATN----------NVIATV   70 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTT--SSEEEEEEGGGTEEEEEETTTT----------EEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEE--CCCCceEEEEeCC--CCEEEEEECCCCEEEEEECCCC----------ceeeee
Confidence            3567889999999999999999883  3356789999999  6766 57778999999999873          335666


Q ss_pred             ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEE
Q 004290          144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  223 (763)
Q Consensus       144 ~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  223 (763)
                      ..+. .+..++|++++..+++++..++.+.+|+..+++..           . ..              .+.....+++|
T Consensus        71 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~--------------~~~~~~~~~~~  123 (301)
T d1l0qa2          71 PAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA-----------G-TV--------------KTGKSPLGLAL  123 (301)
T ss_dssp             ECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----------E-EE--------------ECSSSEEEEEE
T ss_pred             eccc-cccccccccccccccccccccceeeecccccceee-----------e-ec--------------cccccceEEEe
Confidence            6554 46889999966667777778889999999876521           0 00              12234678999


Q ss_pred             eCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-Ce
Q 004290          224 SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-EH  302 (763)
Q Consensus       224 ~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d-~~  302 (763)
                      +|++..+++++..++.+.+|+..+...+..+.                    .+.  .+..++++|++.+++++..+ +.
T Consensus       124 ~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~  181 (301)
T d1l0qa2         124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--------------------VGR--SPKGIAVTPDGTKVYVANFDSMS  181 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------CCS--SEEEEEECTTSSEEEEEETTTTE
T ss_pred             ecCCCeeeeeeccccceeeeeccccceeeecc--------------------cCC--CceEEEeeccccceeeecccccc
Confidence            99865556677778999999998765432221                    111  37889999999998888775 56


Q ss_pred             EEEEECCC
Q 004290          303 VYLMDVNH  310 (763)
Q Consensus       303 i~iwd~~~  310 (763)
                      +.+|+...
T Consensus       182 ~~~~~~~~  189 (301)
T d1l0qa2         182 ISVIDTVT  189 (301)
T ss_dssp             EEEEETTT
T ss_pred             cccccccc
Confidence            66665544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.85  E-value=3.7e-21  Score=206.76  Aligned_cols=269  Identities=9%  Similarity=0.024  Sum_probs=165.6

Q ss_pred             CCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEE--EEc--cCCCCceE
Q 004290           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH--SIE--TGHSANVF   97 (763)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~--~~~--~~h~~~V~   97 (763)
                      ...+-+.++++|+  ..+.+++++|..|. .+..++|||||++|++++.|++|++||+.+++...  .+.  .+|...+.
T Consensus        36 V~~~~dg~v~vwD--~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          36 VTLRDAGQIALVD--GDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEETTTTEEEEEE--TTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEcCCCEEEEEE--CCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            3455678999998  67788999999875 59999999999999999999999999999886433  331  24566677


Q ss_pred             EEEEeeCCCCcEE-EEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004290           98 CTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (763)
Q Consensus        98 ~v~~~p~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd  176 (763)
                      +++|+|+  |+++ +++..++.+++||....          .+...+..|...+..+.+.+.+....+..+.|+...++.
T Consensus       113 s~~~spD--G~~l~v~~~~~~~v~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~  180 (426)
T d1hzua2         113 SKFKGYE--DRYTIAGAYWPPQFAIMDGETL----------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  180 (426)
T ss_dssp             CCSTTCT--TTEEEEEEEESSEEEEEETTTC----------CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             eeeecCC--CCEEEEeecCCCeEEEEcCCcc----------ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEe
Confidence            8888899  6765 55568999999999873          335556666666666666654433445555666655554


Q ss_pred             CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCC
Q 004290          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (763)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~  256 (763)
                      ......            ..++.........+ ....+...+..++|+|++..++++...+..+.+|+..+++.+.....
T Consensus       181 ~~~~~~------------i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  247 (426)
T d1hzua2         181 VKETGK------------VLLVNYKDIDNLTV-TSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  247 (426)
T ss_dssp             ETTTTE------------EEEEECSSSSSCEE-EEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred             cCCCCe------------EEEEEeccccceee-EEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEecc
Confidence            433211            11111111110000 00123456789999998544444555677899999998765443321


Q ss_pred             CCCCCCcccccccccccCCCCCccceeEEEEcCCCC-EEE--EEeCCCeEEEEECCCCC-------ccceEeecCCCCee
Q 004290          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVL--LSYSGEHVYLMDVNHAG-------GRAMRYTVGDASKI  326 (763)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~-~l~--~~s~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~  326 (763)
                      ...+                +   ....+.+.+.+. .+.  ..+.|+.+.+|+.....       .......++..+..
T Consensus       248 ~~~~----------------~---~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~  308 (426)
T d1hzua2         248 GKTP----------------H---PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLF  308 (426)
T ss_dssp             SSCC----------------C---CSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCC
T ss_pred             CCcc----------------c---ccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeE
Confidence            1111                1   111222222221 122  22346777777765532       22334455677788


Q ss_pred             eeeccCCCCcc
Q 004290          327 MSFTPTLNGLE  337 (763)
Q Consensus       327 ~~~~p~~~~~~  337 (763)
                      ++|+|+...+.
T Consensus       309 v~~sPdg~~l~  319 (426)
T d1hzua2         309 IKTHPKSSHLY  319 (426)
T ss_dssp             EECCTTCSEEE
T ss_pred             EEcCCCCceEE
Confidence            89999766553

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=6.5e-20  Score=190.18  Aligned_cols=191  Identities=9%  Similarity=0.026  Sum_probs=124.3

Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEE-EEEeCCCcEEEEECCCCCCCCCCC
Q 004290           56 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDD  134 (763)
Q Consensus        56 l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~  134 (763)
                      ++|++++++|++++.|++|.|||+.+++.+.++...|...+.+++|+|+  |+++ +++..++.|++||+.+++.     
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spD--G~~l~v~~~~~~~v~~~d~~t~~~-----   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTCKN-----   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTTEE-----
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCC--CCEEEEEECCCCcEEEEeCccCee-----
Confidence            5789999999999999999999999999999885466777899999999  6765 6666899999999987421     


Q ss_pred             CCCCCceeee------cccCceeEEEEecCCCCEEEEEe------------CCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290          135 NAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSAS------------EDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (763)
Q Consensus       135 ~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  196 (763)
                           +..+.      .+...+..++|+| ++.++++++            .++.+.+||..+++.....        ..
T Consensus        75 -----~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------~~  140 (346)
T d1jmxb_          75 -----TFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV--------RT  140 (346)
T ss_dssp             -----EEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS--------EE
T ss_pred             -----eeeecccccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEE--------Ee
Confidence                 22222      1223567899999 456665554            4677888887766532100        00


Q ss_pred             EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (763)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (763)
                      .               .....+..+.++++ +.+++.   ++.+.+||+.+++.+..+..                    
T Consensus       141 ~---------------~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~--------------------  181 (346)
T d1jmxb_         141 F---------------PMPRQVYLMRAADD-GSLYVA---GPDIYKMDVKTGKYTVALPL--------------------  181 (346)
T ss_dssp             E---------------ECCSSCCCEEECTT-SCEEEE---SSSEEEECTTTCCEEEEECS--------------------
T ss_pred             e---------------eccCceEEEEecCC-CEEEEe---CCcceEEEccCCCEEEEEec--------------------
Confidence            0               00112334555564 444443   25688999987764433211                    


Q ss_pred             CCccceeEEEEcCCCCEEEEEeC-CCeEEEEEC
Q 004290          277 RSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDV  308 (763)
Q Consensus       277 ~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~  308 (763)
                      +.  ....+.++|++..++.... ++.+.+++.
T Consensus       182 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (346)
T d1jmxb_         182 RN--WNRKGYSAPDVLYFWPHQSPRHEFSMLYT  212 (346)
T ss_dssp             TT--CCCTTBCCCBCCCCCCCCCTTCEEEEEEE
T ss_pred             CC--CccceEEeccccEEEEEecCCCceEeeee
Confidence            11  2445667888877655444 556666543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=2.6e-19  Score=184.76  Aligned_cols=148  Identities=7%  Similarity=-0.029  Sum_probs=104.8

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEccC-CCCceEEEEEeeCCCCcEE-EEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290           63 SLLISGSDDTHINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (763)
Q Consensus        63 ~~Lasgs~D~~v~iWd~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (763)
                      ++|++++.|++|.|||+.+++.+..+... +...+.+++|+|+  |+++ ++++.++.|.+||+.+++          .+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spD--g~~l~v~~~~~~~v~v~D~~t~~----------~~   69 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTGE----------TL   69 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTCC----------EE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCC--CCEEEEEECCCCeEEEEECCCCc----------EE
Confidence            58999999999999999999999888433 3456889999999  6776 567789999999999743          23


Q ss_pred             eeeecc-----cCceeEEEEecCCCCEEEEEeC------------CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290          141 ALYQCH-----TRRVKKLAVEVGNPHVVWSASE------------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       141 ~~~~~h-----~~~v~~l~~sp~~~~~l~s~s~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                      ..+..+     ...+..++|+| ++.++++++.            +..+.+||..+.+..                    
T Consensus        70 ~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--------------------  128 (337)
T d1pbyb_          70 GRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR--------------------  128 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE--------------------
T ss_pred             EEEecCCCcccccceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeEE--------------------
Confidence            433332     34566899999 5566666653            456777777665411                    


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCc
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT  252 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~  252 (763)
                         ...   .....+..++|+|+ ++++++++.  .+.+||..+++...
T Consensus       129 ---~~~---~~~~~~~~~~~s~d-g~~l~~~~~--~~~~~d~~~~~~~~  168 (337)
T d1pbyb_         129 ---KAF---EAPRQITMLAWARD-GSKLYGLGR--DLHVMDPEAGTLVE  168 (337)
T ss_dssp             ---EEE---ECCSSCCCEEECTT-SSCEEEESS--SEEEEETTTTEEEE
T ss_pred             ---Eec---cccCCceEEEEcCC-CCEEEEEcC--CcceeeeecCcEEE
Confidence               000   01234667899997 678888764  47789998875443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.82  E-value=2.7e-18  Score=174.10  Aligned_cols=222  Identities=9%  Similarity=0.113  Sum_probs=159.0

Q ss_pred             cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (763)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~  102 (763)
                      ..-+..|.+|+  .++.+.++++... ..+..++|+|||++| ++++.++.|++||+.+++.+..+ ..+. .+..+.|+
T Consensus         8 ~~~~~~v~v~D--~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~-~~~~-~~~~~~~~   82 (301)
T d1l0qa2           8 NSESDNISVID--VTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-PAGS-SPQGVAVS   82 (301)
T ss_dssp             ETTTTEEEEEE--TTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-ECSS-SEEEEEEC
T ss_pred             ECCCCEEEEEE--CCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee-eccc-cccccccc
Confidence            34566788888  5667788888754 457899999999987 56778999999999999999988 4554 56899999


Q ss_pred             eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~  182 (763)
                      +++ ...++++..++.+.+|+....          .....+. +...+.++.|+|++..+++++..++.+.+|+..+.+.
T Consensus        83 ~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~  150 (301)
T d1l0qa2          83 PDG-KQVYVTNMASSTLSVIDTTSN----------TVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV  150 (301)
T ss_dssp             TTS-SEEEEEETTTTEEEEEETTTT----------EEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccc-ccccccccccceeeecccccc----------eeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccce
Confidence            994 445666777889999999863          2244444 5567789999997666677777889999999987652


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC-CCcEEEEeCCCCCCCcccCCCCCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPP  261 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (763)
                      .           ..+               .....+..++++|++ ..+++++. ++.+.+|+..........       
T Consensus       151 ~-----------~~~---------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  196 (301)
T d1l0qa2         151 I-----------NTV---------------SVGRSPKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSVIDTV-------  196 (301)
T ss_dssp             E-----------EEE---------------ECCSSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEEEEE-------
T ss_pred             e-----------eec---------------ccCCCceEEEeeccc-cceeeecccccccccccccceeeeecc-------
Confidence            1           000               012346788999984 55655554 466777877654322111       


Q ss_pred             CcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCeEEEEECCCC
Q 004290          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHA  311 (763)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~---d~~i~iwd~~~~  311 (763)
                                   ..+.  .+..++|++++..++++..   ++.|++||+.++
T Consensus       197 -------------~~~~--~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         197 -------------KVEA--APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             -------------ECSS--EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             -------------cccC--CcceeeccccccccccccccceeeeeeeeecCCC
Confidence                         0111  3788999999998877654   468999998874

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=2.5e-19  Score=192.13  Aligned_cols=235  Identities=9%  Similarity=0.055  Sum_probs=160.2

Q ss_pred             CCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEc--cCCCCceE
Q 004290           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIE--TGHSANVF   97 (763)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--~~~~~~--~~h~~~V~   97 (763)
                      ...+-+.++.+|+  ..+.+++..|..|. .+..++|||||++|++++.|++|++||+.+++  .+..+.  .+|.+.+.
T Consensus        36 v~~~d~g~v~v~D--~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          36 VTLRDAGQIALID--GSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEETTTTEEEEEE--TTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEcCCCEEEEEE--CCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            3455578899998  78888999998874 69999999999999999999999999998875  333432  24556666


Q ss_pred             EEEEeeCCCCcEE-EEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee-----------cccCceeEEEEecCCCCEEEE
Q 004290           98 CTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-----------CHTRRVKKLAVEVGNPHVVWS  165 (763)
Q Consensus        98 ~v~~~p~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-----------~h~~~v~~l~~sp~~~~~l~s  165 (763)
                      +..|+|+  |++| +++..+++|++||..++..          +..+.           .+......+.++|++..++++
T Consensus       113 s~~~SpD--G~~l~vs~~~~~~v~i~d~~t~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs  180 (432)
T d1qksa2         113 SKMEGWE--DKYAIAGAYWPPQYVIMDGETLEP----------KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  180 (432)
T ss_dssp             CCSTTCT--TTEEEEEEEETTEEEEEETTTCCE----------EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             ecccCCC--CCEEEEEcCCCCeEEEEeCccccc----------eeeeccCCccccceeccCCCceeEEEECCCCCEEEEE
Confidence            7777888  6764 7888899999999987432          22222           245567788999977667788


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-CCCcEEEEe
Q 004290          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYD  244 (763)
Q Consensus       166 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd  244 (763)
                      ...++.|.+||..+.+..            .+..+.            ....+..++|+|+ ++++++++ .++.+.++|
T Consensus       181 ~~~~~~i~~~d~~~~~~~------------~~~~i~------------~g~~~~~~~~spd-g~~~~va~~~~~~v~v~d  235 (432)
T d1qksa2         181 VKETGKILLVDYTDLNNL------------KTTEIS------------AERFLHDGGLDGS-HRYFITAANARNKLVVID  235 (432)
T ss_dssp             ETTTTEEEEEETTCSSEE------------EEEEEE------------CCSSEEEEEECTT-SCEEEEEEGGGTEEEEEE
T ss_pred             EccCCeEEEEEccCCCcc------------eEEEEc------------ccCccccceECCC-CCEEEEeccccceEEEee
Confidence            888999999998776421            111111            1235678999998 56665555 556899999


Q ss_pred             CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCC
Q 004290          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAG  312 (763)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~~~  312 (763)
                      ..+.+.+..+.....               ..+.. ......+...+....+.. .++.|.+|+.....
T Consensus       236 ~~~~~~~~~~~~g~~---------------~~~~~-~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~  288 (432)
T d1qksa2         236 TKEGKLVAIEDTGGQ---------------TPHPG-RGANFVHPTFGPVWATSHMGDDSVALIGTDPEG  288 (432)
T ss_dssp             TTTTEEEEEEECSSS---------------SBCCT-TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred             cccceEEEEeccCcc---------------ccccC-cccceecCCCCceecccccCCceEEeccccccc
Confidence            987654433211100               00111 233444555555544443 37889999877643

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=1.7e-17  Score=174.18  Aligned_cols=206  Identities=11%  Similarity=-0.011  Sum_probs=137.3

Q ss_pred             eccccCceEEEEeCCCCCEEEEE-----eCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe------
Q 004290           46 LEGHQGCVNAISWNSKGSLLISG-----SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA------  114 (763)
Q Consensus        46 l~gH~~~V~~l~fsp~g~~Lasg-----s~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s------  114 (763)
                      ...|.+++.+++++|||+.++..     +..+.|.+||..+++.+..+ ..+..  ..++|+|+  |++|++++      
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~-~~~~~--~~~a~SpD--G~~l~va~~~~~~~   90 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV-NGGFL--PNPVAAHS--GSEFALASTSFSRI   90 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE-eCCCC--ccEEEcCC--CCEEEEEeecCCcc
Confidence            34688999999999999988764     23457999999999999988 44443  37999999  78888875      


Q ss_pred             ----CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCc-------eeEEEEecCCCCEEEE-EeCCCcEEEEECCCCCC
Q 004290          115 ----GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR-------VKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSS  182 (763)
Q Consensus       115 ----~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~-------v~~l~~sp~~~~~l~s-~s~dg~i~iwd~~~~~~  182 (763)
                          .++.|.+||..+++          ++..+..+...       ...+.|+|++..+++. ...++.+.+|+....+.
T Consensus        91 ~~~~~~~~v~v~D~~t~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  160 (373)
T d2madh_          91 AKGKRTDYVEVFDPVTFL----------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD  160 (373)
T ss_pred             cccccceEEEEEECCCCc----------EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE
Confidence                46789999999743          23444433332       2456777754333322 23456777787765541


Q ss_pred             CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (763)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (763)
                      .                             .+.....++.|+|++...+++.+.|+.+.+||...+.........     
T Consensus       161 ~-----------------------------~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~-----  206 (373)
T d2madh_         161 D-----------------------------QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGA-----  206 (373)
T ss_pred             E-----------------------------EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeee-----
Confidence            1                             112235678899986667789999999999999876543322110     


Q ss_pred             cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                               ....+... ....+.+++++. ++..+.++.+++|+..+.
T Consensus       207 ---------~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         207 ---------MLTAAQNL-LTQPAQANKSGR-IVWPVYSGKILQADISAA  244 (373)
T ss_pred             ---------ccccCccc-eeeeEEECCCce-EEEecCCceEEEEEcCCC
Confidence                     00011111 245566777765 456667899999998874

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=4.7e-17  Score=167.53  Aligned_cols=245  Identities=8%  Similarity=0.013  Sum_probs=150.3

Q ss_pred             Ccccccccccchhhhhccccceeecc--ccCceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCCC-----C
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELEG--HQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHS-----A   94 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~g--H~~~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h~-----~   94 (763)
                      ....+.+|++|+  .++.++++++..  +...+.+++|+|||++| ++++.++.|.+||+.+++.+..+ ..+.     .
T Consensus         6 t~~~d~~v~v~D--~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~-~~~~~~~~~~   82 (337)
T d1pbyb_           6 APARPDKLVVID--TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI-DLSTPEERVK   82 (337)
T ss_dssp             EEETTTEEEEEE--TTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE-ECCBTTEEEE
T ss_pred             EEcCCCEEEEEE--CCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEE-ecCCCccccc
Confidence            344567899998  567778888765  34568899999999987 56778999999999999998887 3332     3


Q ss_pred             ceEEEEEeeCCCCcEEEEEe------------CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE
Q 004290           95 NVFCTKFVPETSDELVVSGA------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (763)
Q Consensus        95 ~V~~v~~~p~~~~~~l~s~s------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  162 (763)
                      .+..++|+|+  +++++++.            .+..+.+||....          .....+. +...+..++|+| ++.+
T Consensus        83 ~~~~v~~s~d--g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------~~~~~~~-~~~~~~~~~~s~-dg~~  148 (337)
T d1pbyb_          83 SLFGAALSPD--GKTLAIYESPVRLELTHFEVQPTRVALYDAETL----------SRRKAFE-APRQITMLAWAR-DGSK  148 (337)
T ss_dssp             CTTCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----------EEEEEEE-CCSSCCCEEECT-TSSC
T ss_pred             ceeeEEEcCC--CcEEEEeecCCcceeeeccccccceeeccccCC----------eEEEecc-ccCCceEEEEcC-CCCE
Confidence            4567999999  68887776            4677888998863          2244444 456788999999 5567


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEE
Q 004290          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (763)
Q Consensus       163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~i  242 (763)
                      +++++  +.+.+||..+++............ ....... +..........+...+.......+ ...+..+..++.+.+
T Consensus       149 l~~~~--~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  223 (337)
T d1pbyb_         149 LYGLG--RDLHVMDPEAGTLVEDKPIQSWEA-ETYAQPD-VLAVWNQHESSGVMATPFYTARKD-IDPADPTAYRTGLLT  223 (337)
T ss_dssp             EEEES--SSEEEEETTTTEEEEEECSTTTTT-TTBCCCB-CCCCCCCCTTTTEEEEEEEEEBTT-SCTTSGGGEEEEEEE
T ss_pred             EEEEc--CCcceeeeecCcEEEEeecCCccc-cceecCC-cceeeccccccceeeeeeeeeeec-cceeeecccCccEEE
Confidence            76765  457889988765321100000000 0000000 000000000111111222222222 223344455677889


Q ss_pred             EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ||..++......            +       ..+. ..+..+.++|++.+++.+  ++.|++||+.++
T Consensus       224 ~~~~~~~~~~~~------------~-------~~~~-~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~  270 (337)
T d1pbyb_         224 MDLETGEMAMRE------------V-------RIMD-VFYFSTAVNPAKTRAFGA--YNVLESFDLEKN  270 (337)
T ss_dssp             EETTTCCEEEEE------------E-------EECS-SCEEEEEECTTSSEEEEE--ESEEEEEETTTT
T ss_pred             EEcCCCcEEEEE------------e-------cCCC-cceEEEEecccceEEEEc--cccEEEEECCCC
Confidence            998876422110            0       0111 247888999999988765  589999999884

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=2.8e-16  Score=163.29  Aligned_cols=201  Identities=9%  Similarity=0.023  Sum_probs=120.6

Q ss_pred             ceEEEEeCCCCCEEEEEe-----CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEE----------eCC
Q 004290           52 CVNAISWNSKGSLLISGS-----DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG----------AGD  116 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs-----~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~----------s~d  116 (763)
                      ++.-.+.+|||+.++...     .+.+|.+||..+++.+.++ ..+.  +..++|+|+  +++|+++          ..|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~-~~g~--~~~~a~SpD--g~~l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-DGGF--LPNPVVADD--GSFIAHASTVFSRIARGERT   77 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE-EECS--SCEEEECTT--SSCEEEEEEEEEETTEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE-ECCC--CCceEEcCC--CCEEEEEeCCCccccccCCC
Confidence            344456789999887653     4567999999999999888 3443  337999999  6777654          347


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeeec-------ccCceeEEEEecCCCCEEEEE--eCCCcEEEEECCCCCCCCCCC
Q 004290          117 AEVRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFRQGSSCPPAG  187 (763)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~sp~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~  187 (763)
                      +.|++||..++.          ++..+..       .......++|+|++ ..++.+  +.+..+.+||..+++...   
T Consensus        78 ~~v~v~D~~t~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~~~~~~~~~~~~~~~~~~---  143 (355)
T d2bbkh_          78 DYVEVFDPVTLL----------PTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKR---  143 (355)
T ss_dssp             EEEEEECTTTCC----------EEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEE---
T ss_pred             CEEEEEECCCCC----------EEEEEecCCcceeecCCCCceEEEecCC-CeeEEecCCCCceeeeeecCCCcEee---
Confidence            899999998743          2232221       12334668999954 555554  346789999998875220   


Q ss_pred             CCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccc
Q 004290          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (763)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  267 (763)
                              .+ .  ........    .......+.+++++..+++....++.+.+++......                 
T Consensus       144 --------~~-~--~~~~~~~~----~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----------------  191 (355)
T d2bbkh_         144 --------ML-D--VPDCYHIF----PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----------------  191 (355)
T ss_dssp             --------EE-E--CCSEEEEE----EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----------------
T ss_pred             --------EE-e--cCCcceEe----ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----------------
Confidence                    00 0  00000000    0112233455554322222333344444444433221                 


Q ss_pred             ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (763)
Q Consensus       268 ~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~  312 (763)
                              .+.. .+....+.+++..++.++.++.+++|++..+.
T Consensus       192 --------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  227 (355)
T d2bbkh_         192 --------EDEF-LINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD  227 (355)
T ss_dssp             --------TTSC-BCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred             --------eecc-eeeeccccCCCCeEEEecCCCeEEEEecCCCc
Confidence                    1111 35566788888899999999999999998853

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.66  E-value=4e-14  Score=147.94  Aligned_cols=179  Identities=12%  Similarity=0.003  Sum_probs=121.2

Q ss_pred             ccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEccCCCCce--
Q 004290           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGHSANV--   96 (763)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs----------~D~~v~iWd~~~~~~~~~~~~~h~~~V--   96 (763)
                      .+.+++  ..+.+.+.++.++...  .++|+|||++|++++          .++.|.+||..+++.+..+ ..+....  
T Consensus        48 ~v~v~D--~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-~~~~~~~~~  122 (373)
T d2madh_          48 QQWVLD--AGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADI-ELPDAPRFD  122 (373)
T ss_pred             eEEEEE--CCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEE-ecCCcceeE
Confidence            345554  6677888888877654  799999999998875          3578999999999988887 4444333  


Q ss_pred             -----EEEEEeeCCCCcEEEEE--eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290           97 -----FCTKFVPETSDELVVSG--AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (763)
Q Consensus        97 -----~~v~~~p~~~~~~l~s~--s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d  169 (763)
                           ..+.|+|+  ++.++..  ..++.+.+|+....              ....+.....++.++|++...+++.+.|
T Consensus       123 ~~~~~~~~~~s~d--g~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~s~~g~~~~v~~~~d  186 (373)
T d2madh_         123 VGPYSWMNANTPN--NADLLFFQFAAGPAVGLVVQGGS--------------SDDQLLSSPTCYHIHPGAPSTFYLLCAQ  186 (373)
T ss_pred             eccCCCcEEEEeC--CCcEEEEEEcCCCceEEeeccCC--------------eEEEEeccceeEEEecCCCcEEEEEcCC
Confidence                 45788888  4544433  44667888887742              2234555678899999777788899999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (763)
Q Consensus       170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~  249 (763)
                      +.+.+||....+....           ..        ..............+.+.++  ..++..+.++.+.+|+.....
T Consensus       187 g~~~~~~~~~~~~~~~-----------~~--------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         187 GGLAKTDHAGGAAGAG-----------LV--------GAMLTAAQNLLTQPAQANKS--GRIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             CeEEEEEcCCceeeEE-----------Ee--------eeccccCccceeeeEEECCC--ceEEEecCCceEEEEEcCCCe
Confidence            9999999887653210           00        00001112222344555553  466677789999999988764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.66  E-value=2.8e-15  Score=154.52  Aligned_cols=250  Identities=8%  Similarity=-0.041  Sum_probs=145.3

Q ss_pred             Ccccccccccchhhhhccccceeec-cccCceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCC-----CCc
Q 004290           23 RPDVNHSLQMHSSLVRRLSQERELE-GHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGH-----SAN   95 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~-gH~~~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h-----~~~   95 (763)
                      ....+..|++|+  +++.+++++++ .|...+.+++|+|||++| ++++.++.|++||+.+++.+..+....     ...
T Consensus        13 ~~~~~~~v~v~D--~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~   90 (346)
T d1jmxb_          13 VTNYPNNLHVVD--VASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS   90 (346)
T ss_dssp             EEETTTEEEEEE--TTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEEC
T ss_pred             EEcCCCEEEEEE--CCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCc
Confidence            344567899998  56778888887 466778999999999987 566688999999999999888773222     134


Q ss_pred             eEEEEEeeCCCCcEEEEEe------------CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEE
Q 004290           96 VFCTKFVPETSDELVVSGA------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (763)
Q Consensus        96 V~~v~~~p~~~~~~l~s~s------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  163 (763)
                      +..++|+|+  |+++++++            .+..+.+|+..++...       ..+... .....+..+.+++ ++.++
T Consensus        91 ~~~v~~s~D--G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~-~~~~~  159 (346)
T d1jmxb_          91 MYSFAISPD--GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-------KPVRTF-PMPRQVYLMRAAD-DGSLY  159 (346)
T ss_dssp             SSCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-------CCSEEE-ECCSSCCCEEECT-TSCEE
T ss_pred             eEEEEEecC--CCEEEEEecCCcceeeeeccCcceEEEEecccceee-------eEEEee-eccCceEEEEecC-CCEEE
Confidence            568999999  68777665            4778899998864321       112211 1234566666766 55555


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceE-EEEEeCCCCcEEEEEeCCCcEEE
Q 004290          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK-SCDISSTRPHLLLVGGSDAFARL  242 (763)
Q Consensus       164 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~~l~sgs~Dg~i~i  242 (763)
                      ++   ++.+.+||+.+++............ ...+. ..+..............+. .....+.....++++..+..+.+
T Consensus       160 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (346)
T d1jmxb_         160 VA---GPDIYKMDVKTGKYTVALPLRNWNR-KGYSA-PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS  234 (346)
T ss_dssp             EE---SSSEEEECTTTCCEEEEECSTTCCC-TTBCC-CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred             Ee---CCcceEEEccCCCEEEEEecCCCcc-ceEEe-ccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEE
Confidence            43   2568999988765321110000000 00000 0000000000001111111 11222222445666777788999


Q ss_pred             EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (763)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~  311 (763)
                      ||+.++.......                   ..+.. .+..+.+++++.+++... ++.|++||+.++
T Consensus       235 ~~~~~~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~  282 (346)
T d1jmxb_         235 VDLKTGKTHTQEF-------------------ADLTE-LYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR  282 (346)
T ss_dssp             EETTTCCEEEEEE-------------------EECSS-CEEEEEECSSCTTEEEEE-ESEEEEEETTTT
T ss_pred             EECCCCceEEEEe-------------------ecccc-eeEEEEEeCCCCEEEEec-CCeEEEEECCCC
Confidence            9988765322110                   11222 488889999988877665 457999998774

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=5.3e-15  Score=151.79  Aligned_cols=196  Identities=14%  Similarity=0.178  Sum_probs=125.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCe---EEEEEccCCCCceEEEEEeeCCCCcEEEEE-eCCCcEEEEECCCCCCCCCCCCCCCC
Q 004290           64 LLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITP  139 (763)
Q Consensus        64 ~Lasgs~D~~v~iWd~~~~~---~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~  139 (763)
                      .+++++.|++|+||++....   .+..+  .|.+.|.+++|+|+  |++|+++ ..|+.|++|++.......       .
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~--~~~~~v~~la~spD--G~~L~v~~~~d~~i~~~~i~~~~~~~-------~   74 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGAL-------T   74 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCCE-------E
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE--cCCCCEeEEEEeCC--CCEEEEEECCCCeEEEEEEeCCCCcE-------E
Confidence            45788899999999987543   23333  57789999999999  7877554 458999999998643211       1


Q ss_pred             ceeeecccCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccce
Q 004290          140 SALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL  218 (763)
Q Consensus       140 ~~~~~~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  218 (763)
                      ......+...+..++|+| +++++++++ .++.|.+|+.......            ...           ....+...+
T Consensus        75 ~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~------------~~~-----------~~~~~~~~~  130 (333)
T d1ri6a_          75 FAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPV------------GVV-----------DVVEGLDGC  130 (333)
T ss_dssp             EEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEE------------EEE-----------EEECCCTTB
T ss_pred             EeeecccCCCceEEEEcC-CCCEEeecccCCCceeeeccccccce------------ecc-----------cccCCCccc
Confidence            112223456688899999 456666666 4778999987665311            010           011233456


Q ss_pred             EEEEEeCCCCcEEEEEe-CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEE
Q 004290          219 KSCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS  297 (763)
Q Consensus       219 ~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~  297 (763)
                      .++.|+|+ ++++++++ .+..|.+|+...........            ......   ........++|++++.+++..
T Consensus       131 ~~v~~s~d-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------------~~~~~~---~~g~~p~~i~~~~~~~~~~~~  194 (333)
T d1ri6a_         131 HSANISPD-NRTLWVPALKQDRICLFTVSDDGHLVAQD------------PAEVTT---VEGAGPRHMVFHPNEQYAYCV  194 (333)
T ss_dssp             CCCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEEEE------------EEEEEC---STTCCEEEEEECTTSSEEEEE
T ss_pred             eEEEeeec-ceeeeccccccceeeEEEeccCCcceeee------------ceeeee---ecCCCccEEEEeccceeEEee
Confidence            78899998 56666655 55679999987654221110            000000   111136789999999988766


Q ss_pred             eC-CCeEEEEECCC
Q 004290          298 YS-GEHVYLMDVNH  310 (763)
Q Consensus       298 s~-d~~i~iwd~~~  310 (763)
                      .. .+...+|+...
T Consensus       195 ~~~~~~~~v~~~~~  208 (333)
T d1ri6a_         195 NELNSSVDVWELKD  208 (333)
T ss_dssp             ETTTTEEEEEESSC
T ss_pred             ccccCceEEEeecc
Confidence            54 66788887655

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=5.4e-14  Score=144.11  Aligned_cols=246  Identities=7%  Similarity=0.057  Sum_probs=151.8

Q ss_pred             Ccccccccccchhhhhc-cccceeeccccCceEEEEeCCCCCEEEE-EeCCCcEEEEeCCCCeEEEEE--ccCCCCceEE
Q 004290           23 RPDVNHSLQMHSSLVRR-LSQERELEGHQGCVNAISWNSKGSLLIS-GSDDTHINVWSYSSRKLLHSI--ETGHSANVFC   98 (763)
Q Consensus        23 ~~~~~~~~~~~~~~~~~-~~~~~~l~gH~~~V~~l~fsp~g~~Las-gs~D~~v~iWd~~~~~~~~~~--~~~h~~~V~~   98 (763)
                      ..+-+++|++|+..... +++++.+ .|.+.|..|+|+|||++|++ +..|+.|++|++.......++  ...+...+..
T Consensus         9 ~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~   87 (333)
T d1ri6a_           9 ASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH   87 (333)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSE
T ss_pred             ECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceE
Confidence            34567888898743222 3444443 48899999999999998855 456899999999765322211  1234456778


Q ss_pred             EEEeeCCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-CCCcEEEEE
Q 004290           99 TKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHD  176 (763)
Q Consensus        99 v~~~p~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd  176 (763)
                      ++|+|+  |++|++++. ++.|.+|+......        ........+...+.++.++|++ +++++++ .+..|.+|+
T Consensus        88 l~~spD--g~~l~v~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~s~d~-~~~~~~~~~~~~i~~~~  156 (333)
T d1ri6a_          88 ISTDHQ--GQFVFVGSYNAGNVSVTRLEDGLP--------VGVVDVVEGLDGCHSANISPDN-RTLWVPALKQDRICLFT  156 (333)
T ss_dssp             EEECTT--SSEEEEEETTTTEEEEEEEETTEE--------EEEEEEECCCTTBCCCEECTTS-SEEEEEEGGGTEEEEEE
T ss_pred             EEEcCC--CCEEeecccCCCceeeeccccccc--------eecccccCCCccceEEEeeecc-eeeeccccccceeeEEE
Confidence            999999  788888875 77899998875321        1123344567788999999955 5555554 566799999


Q ss_pred             CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCC
Q 004290          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (763)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~  256 (763)
                      .......          ......       ..  ..........++|++++...+.+....+...+|+........... 
T Consensus       157 ~~~~~~~----------~~~~~~-------~~--~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-  216 (333)
T d1ri6a_         157 VSDDGHL----------VAQDPA-------EV--TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV-  216 (333)
T ss_dssp             ECTTSCE----------EEEEEE-------EE--ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE-
T ss_pred             eccCCcc----------eeeece-------ee--eeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeee-
Confidence            8765421          000000       00  011223457899999854444455566788888876433211100 


Q ss_pred             CCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 004290          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  310 (763)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~  310 (763)
                              ....  ..............+++++++++++.... ++.+.+|++..
T Consensus       217 --------~~~~--~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~  261 (333)
T d1ri6a_         217 --------QTLD--MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  261 (333)
T ss_dssp             --------EEEE--CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             --------eeee--eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcC
Confidence                    0000  00000011124677899999998777655 78999998866

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=3e-14  Score=147.71  Aligned_cols=182  Identities=10%  Similarity=0.029  Sum_probs=109.2

Q ss_pred             ccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEE----------eCCCcEEEEeCCCCeEEEEEccCCC---
Q 004290           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISG----------SDDTHINVWSYSSRKLLHSIETGHS---   93 (763)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasg----------s~D~~v~iWd~~~~~~~~~~~~~h~---   93 (763)
                      ...+.+++  ..+.+++.++..+..+  .++|||||++|++.          ..|+.|++||+.+++.+..+. .+.   
T Consensus        27 ~~~v~v~D--~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~-~~~~~~  101 (355)
T d2bbkh_          27 VTQQFVID--GEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPR  101 (355)
T ss_dssp             SEEEEEEE--TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCC
T ss_pred             cCeEEEEE--CCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEe-cCCcce
Confidence            44566776  5667778888766544  79999999988764          347899999999999887762 221   


Q ss_pred             ----CceEEEEEeeCCCCcEEEEEe--CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe
Q 004290           94 ----ANVFCTKFVPETSDELVVSGA--GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  167 (763)
Q Consensus        94 ----~~V~~v~~~p~~~~~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s  167 (763)
                          .....++|+|+  ++.++.++  .+..+.+|+.....          .+..+..+.. ..  .+ +.....+++.+
T Consensus       102 ~~~~~~~~~~~~s~d--g~~~~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-~~--~~-~~~~~~~~~~~  165 (355)
T d2bbkh_         102 FLVGTYPWMTSLTPD--GKTLLFYQFSPAPAVGVVDLEGKA----------FKRMLDVPDC-YH--IF-PTAPDTFFMHC  165 (355)
T ss_dssp             CCBSCCGGGEEECTT--SSEEEEEECSSSCEEEEEETTTTE----------EEEEEECCSE-EE--EE-EEETTEEEEEE
T ss_pred             eecCCCCceEEEecC--CCeeEEecCCCCceeeeeecCCCc----------EeeEEecCCc-ce--Ee-ecCCcceEEEc
Confidence                23456899999  67776664  46789999998632          2333332221 11  11 11223333444


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (763)
Q Consensus       168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~  247 (763)
                      .|+....+........            ...+....       ...+...+....+.+. +..++.++.++.+++|++..
T Consensus       166 ~dg~~~~v~~~~~~~~------------~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~  225 (355)
T d2bbkh_         166 RDGSLAKVAFGTEGTP------------EITHTEVF-------HPEDEFLINHPAYSQK-AGRLVWPTYTGKIHQIDLSS  225 (355)
T ss_dssp             TTSCEEEEECCSSSCC------------EEEECCCC-------SCTTSCBCSCCEEETT-TTEEEEEBTTSEEEEEECTT
T ss_pred             CCCCEEEEEecCCCeE------------EEEecccc-------cceecceeeeccccCC-CCeEEEecCCCeEEEEecCC
Confidence            5555544443332211            01110000       0112223444567775 56888899999999999987


Q ss_pred             CC
Q 004290          248 LP  249 (763)
Q Consensus       248 ~~  249 (763)
                      +.
T Consensus       226 ~~  227 (355)
T d2bbkh_         226 GD  227 (355)
T ss_dssp             SS
T ss_pred             Cc
Confidence            65

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.41  E-value=6.4e-13  Score=138.53  Aligned_cols=201  Identities=10%  Similarity=-0.042  Sum_probs=118.8

Q ss_pred             ccCceEEEEeCCCCCEEE---EEeCCCc--EEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe---------
Q 004290           49 HQGCVNAISWNSKGSLLI---SGSDDTH--INVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA---------  114 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~La---sgs~D~~--v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s---------  114 (763)
                      +.+....++..++++...   ....++.  |.+||..+++.+..+ .++..+  .++|+|+  ++.|++++         
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~-~~~~~~--~~a~spD--g~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHS-LGAFLS--LAVAGHS--GSDFALASTSFARSAKG   92 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE-EECTTC--EEEECTT--SSCEEEEEEEETTTTSS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEE-eCCCCC--cceECCC--CCEEEEEcccCcccccc
Confidence            455566667788887532   2344444  667799999998888 444433  5899999  67777654         


Q ss_pred             -CCCcEEEEECCCCCCCCCCCCCCCCceeeecc-------cCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290          115 -GDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (763)
Q Consensus       115 -~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  186 (763)
                       .|+.|.+||..+.+          ++..+..+       ......++|+|++..++++...++.+.+||+.+.+..   
T Consensus        93 ~~d~~v~v~D~~t~~----------~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~---  159 (368)
T d1mdah_          93 KRTDYVEVFDPVTFL----------PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD---  159 (368)
T ss_dssp             SEEEEEEEECTTTCC----------EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEE---
T ss_pred             ccCCeEEEEECCCCc----------EeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEe---
Confidence             37789999998742          23333322       2234568999965445544456899999999887522   


Q ss_pred             CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004290          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (763)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (763)
                               ......             ..    ..+.|.+...+++.+.||.+.+|+.............         
T Consensus       160 ---------~~~~~~-------------~~----~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~---------  204 (368)
T d1mdah_         160 ---------QLTKSA-------------SC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA---------  204 (368)
T ss_dssp             ---------EEEECS-------------SC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC---------
T ss_pred             ---------EEeecc-------------Cc----ceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeec---------
Confidence                     000000             00    0112223457777788888888887755432211100         


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                         ...  ..+.. .+..+.+.+++..+.+.  ++.+++++...
T Consensus       205 ---~~~--~~~~~-~~~~~~~~~~g~~~~~~--~~~v~~~~~~~  240 (368)
T d1mdah_         205 ---QCT--GAQNC-SSQAAQANYPGMLVWAV--ASSILQGDIPA  240 (368)
T ss_dssp             ---CSC--TTSCB-CSCCEEETTTTEEEECB--SSCCEEEECCS
T ss_pred             ---ccc--ccccc-ceeecccccCcEEEEec--CCCEEEEeecC
Confidence               000  11111 35567788887655443  45667777665

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.30  E-value=4e-11  Score=129.13  Aligned_cols=143  Identities=9%  Similarity=0.083  Sum_probs=93.6

Q ss_pred             cccccchhhhhccccc---eeeccccCceEEEEeCCCCCEEEEEeC---------CCcEEEEeCCCCeEEEEEccCCCCc
Q 004290           28 HSLQMHSSLVRRLSQE---RELEGHQGCVNAISWNSKGSLLISGSD---------DTHINVWSYSSRKLLHSIETGHSAN   95 (763)
Q Consensus        28 ~~~~~~~~~~~~~~~~---~~l~gH~~~V~~l~fsp~g~~Lasgs~---------D~~v~iWd~~~~~~~~~~~~~h~~~   95 (763)
                      ..+.+++....+-..+   ..|.+|...|.++.|||||++||.++.         ++.+.|||+.+++.. .+ ..|...
T Consensus        36 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l-~~~~~~  113 (470)
T d2bgra1          36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TE-ERIPNN  113 (470)
T ss_dssp             SCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CS-SCCCTT
T ss_pred             CcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-cc-ccCCcc
Confidence            4566666333332211   245566788999999999999998753         567889999988743 45 678889


Q ss_pred             eEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee---------cccCceeEEEEecCCCCEEEEE
Q 004290           96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ---------CHTRRVKKLAVEVGNPHVVWSA  166 (763)
Q Consensus        96 V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~l~~sp~~~~~l~s~  166 (763)
                      +..+.|+|+  |+.||... ++.+.+|+...+........ ...-..+.         ...+....+.|+| +++.|+..
T Consensus       114 ~~~~~~SPD--G~~ia~~~-~~~l~~~~~~~g~~~~~t~~-~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~  188 (470)
T d2bgra1         114 TQWVTWSPV--GHKLAYVW-NNDIYVKIEPNLPSYRITWT-GKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYA  188 (470)
T ss_dssp             EEEEEECSS--TTCEEEEE-TTEEEEESSTTSCCEECCSC-CBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEE
T ss_pred             ccccccccC--cceeeEee-cccceEEECCCCceeeeeec-cCCCcccccccceeeeeeecCCccccEECC-CCCcccee
Confidence            999999999  78888865 67899999886432211000 00000111         1234456788999 55777777


Q ss_pred             eCCCc-EEEEEC
Q 004290          167 SEDGT-LRQHDF  177 (763)
Q Consensus       167 s~dg~-i~iwd~  177 (763)
                      ..|.+ +..|.+
T Consensus       189 ~~d~~~v~~~~~  200 (470)
T d2bgra1         189 QFNDTEVPLIEY  200 (470)
T ss_dssp             EEECTTCCEEEE
T ss_pred             EecCCcCceEEE
Confidence            65543 655554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.26  E-value=6.8e-11  Score=122.37  Aligned_cols=57  Identities=12%  Similarity=0.063  Sum_probs=48.4

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCc----------CcEEEEE-----ecCCcceEEEEeeCCCCeEEEE---eCCC
Q 004290          635 LGQRGDYIASGSDDGRWFIWEKQT----------GRLIKML-----LGDEAVVNCVQCHPFDCVVATS---GIDN  691 (763)
Q Consensus       635 ~s~d~~~l~sgs~Dg~i~iWd~~t----------g~~~~~l-----~gH~~~V~~v~~sp~~~~laS~---s~D~  691 (763)
                      |+++|..+.|.+-|..|..|+++.          ...+..+     .||...+.+..++|+|++|+|+   |.|+
T Consensus       319 fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr  393 (441)
T d1qnia2         319 FDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDR  393 (441)
T ss_dssp             ECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGG
T ss_pred             ecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCcccccc
Confidence            899999999999999999999852          2355566     6999999999999999999999   5554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.22  E-value=1.9e-10  Score=119.32  Aligned_cols=255  Identities=9%  Similarity=-0.010  Sum_probs=148.8

Q ss_pred             ccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEccCCC-------
Q 004290           31 QMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGHS-------   93 (763)
Q Consensus        31 ~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs----------~D~~v~iWd~~~~~~~~~~~~~h~-------   93 (763)
                      ++|-....+.+++..+.++...  .++|+|||+.|+..+          .|+.|.+||..+++.+..+. .+.       
T Consensus        47 ~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~-~p~~~~~~~g  123 (368)
T d1mdah_          47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBS
T ss_pred             eEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeec-CCccceeccc
Confidence            3333335666777777777654  589999999888754          36789999999999888773 221       


Q ss_pred             CceEEEEEeeCCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcE
Q 004290           94 ANVFCTKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL  172 (763)
Q Consensus        94 ~~V~~v~~~p~~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i  172 (763)
                      .....++|+|+  |++|+++. .++.|.+||+...+          ....+..+....    +.|.+...++..+.||.+
T Consensus       124 ~~p~~~a~SpD--Gk~l~va~~~~~~v~~~d~~~~~----------~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~  187 (368)
T d1mdah_         124 PRVHIIGNCAS--SACLLFFLFGSSAAAGLSVPGAS----------DDQLTKSASCFH----IHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             CCTTSEEECTT--SSCEEEEECSSSCEEEEEETTTE----------EEEEEECSSCCC----CEEEETTEEECCCCTTSC
T ss_pred             CCccceEECCC--CCEEEEEeCCCCeEEEEECCCCc----------EeEEeeccCcce----EccCCCceEEEEcCCCCE
Confidence            22346899999  67777665 57999999998732          234443332221    223345667777888888


Q ss_pred             EEEECCCCCCCCCC-----CCCC------------------cccceEEEecCCCceeeccCCCCCc----------cceE
Q 004290          173 RQHDFRQGSSCPPA-----GSSH------------------QECRNILLDLRCGAKRSLADPPKQT----------LSLK  219 (763)
Q Consensus       173 ~iwd~~~~~~~~~~-----~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~----------~~v~  219 (763)
                      .+|++.........     ...+                  ........+...+....+.......          ....
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  267 (368)
T d1mdah_         188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ  267 (368)
T ss_dssp             EEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred             EEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCce
Confidence            88887655432100     0000                  0001112222222211111111100          1123


Q ss_pred             EEEEeCCCCcEEEEEe-CC--------CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC
Q 004290          220 SCDISSTRPHLLLVGG-SD--------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (763)
Q Consensus       220 ~i~~~p~~~~~l~sgs-~D--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd  290 (763)
                      .++++|+. ..+++.. .+        ..|.+||..+++.+..+.                     . ...+.+++|+||
T Consensus       268 ~~a~~~~~-~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~---------------------~-~~~~~~~a~spD  324 (368)
T d1mdah_         268 MVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS---------------------N-GHDSDAIIAAQD  324 (368)
T ss_dssp             CEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE---------------------E-EEEECEEEECCS
T ss_pred             eEEEcCCC-CEEEEEecCCCceeecCCceEEEEECCCCcEeEEec---------------------C-CCceeEEEECCC
Confidence            47788874 4444432 22        358899999886543321                     1 114889999999


Q ss_pred             CCE-E-EEEeCCCeEEEEECCCCCccceEeecCCCCeeee
Q 004290          291 GEE-V-LLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS  328 (763)
Q Consensus       291 g~~-l-~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  328 (763)
                      |+. | +++..|+.|++||..+++.. .....+..+..++
T Consensus       325 G~~~ly~s~~~~~~v~v~D~~tgk~~-~~i~~g~~P~~l~  363 (368)
T d1mdah_         325 GASDNYANSAGTEVLDIYDAASDQDQ-SSVELDKGPESLS  363 (368)
T ss_dssp             SSCEEEEEETTTTEEEEEESSSCEEE-EECCCCSCCCEEE
T ss_pred             CCEEEEEEeCCCCeEEEEECCCCCEE-EEEECCCCCCEEE
Confidence            973 4 45556899999999996633 3333333344443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.91  E-value=5.6e-09  Score=107.78  Aligned_cols=239  Identities=8%  Similarity=-0.016  Sum_probs=133.1

Q ss_pred             ccccCceEEEEeCCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc-------
Q 004290           47 EGHQGCVNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE-------  118 (763)
Q Consensus        47 ~gH~~~V~~l~fsp~g~~Lasg-s~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~-------  118 (763)
                      ..|.-......++|||++|+.. ..+.+|.++|+.+++....+...+...+..++|+|+++-.+++..+.+..       
T Consensus        68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            3466667777788999988654 57889999999999988776446778899999999942225554444321       


Q ss_pred             ----------EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-CcEEEEECCCCCCCC---
Q 004290          119 ----------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCP---  184 (763)
Q Consensus       119 ----------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-g~i~iwd~~~~~~~~---  184 (763)
                                +..+|..+.          .....+. -.+.+..++|+|++ .++++.+.+ ..+..++..+.....   
T Consensus       148 ~~~~~~~~~~~~~iD~~t~----------~v~~qI~-v~~~p~~v~~spdG-k~a~vt~~nse~~~~id~~t~~~~d~i~  215 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETM----------DVAWQVI-VDGNLDNTDADYTG-KYATSTCYNSERAVDLAGTMRNDRDWVV  215 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTC----------SEEEEEE-ESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCSSBCEEE
T ss_pred             ccccccccceEEeecCccc----------eeeEEEe-cCCCccceEECCCC-CEEEEEecCCCceEEEeccCcceEEEEE
Confidence                      233555541          2223333 23457889999955 555555543 333333332222110   


Q ss_pred             --------------CCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 004290          185 --------------PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (763)
Q Consensus       185 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~  250 (763)
                                    ............+........  +...+.. .....+.++|++..+++++..+++|.+||+.+...
T Consensus       216 v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v--~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~  292 (441)
T d1qnia2         216 VFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEF--TRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD  292 (441)
T ss_dssp             EEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSS--EEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH
T ss_pred             eCCccceEEEecCCCEEEeCCCCcEEEEcccCCce--EEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhh
Confidence                          000000111122222221111  1111111 23467899998544456678899999999876432


Q ss_pred             CcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      .  +.....+..++....        .........+|+++|..+.+...|..|..|++..
T Consensus       293 ~--~~~~~~~~~~~~~~~--------~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~  342 (441)
T d1qnia2         293 L--FEDKIELRDTIVAEP--------ELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIAD  342 (441)
T ss_dssp             H--TTTSSCGGGGEEECC--------BCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred             H--hhccCCcceEEEeec--------ccccCcccceecCCceEEEcccccceEEEeccch
Confidence            1  111111111111100        0111245568999998777777899999998754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.90  E-value=2.9e-08  Score=106.19  Aligned_cols=166  Identities=9%  Similarity=0.017  Sum_probs=109.5

Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc----cCCCCceEEEEEeeCCCCcEEEEEeC---------CCcEEE
Q 004290           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAG---------DAEVRL  121 (763)
Q Consensus        55 ~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~----~~h~~~V~~v~~~p~~~~~~l~s~s~---------dg~I~i  121 (763)
                      .+.|.++++++..  .|+.+.+||+.+++....+.    ..|...|.++.|+|+  +++|+.++.         ++.+.+
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpD--g~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTT--SSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCC--CCEEEEEECCcceeeeccCceEEE
Confidence            4779999987764  57889999999998766552    234578999999999  798888753         567899


Q ss_pred             EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004290          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (763)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  201 (763)
                      ||+.++.           +..+..|...+..+.|+| +++.++.. .++.+++|++..++.......+...  .. +...
T Consensus        97 ~d~~~~~-----------~~~l~~~~~~~~~~~~SP-DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~--~~-~~g~  160 (470)
T d2bgra1          97 YDLNKRQ-----------LITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKED--II-YNGI  160 (470)
T ss_dssp             EETTTTE-----------ECCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTT--TE-EESB
T ss_pred             EECCCCc-----------ccccccCCcccccccccc-CcceeeEe-ecccceEEECCCCceeeeeeccCCC--cc-cccc
Confidence            9999743           455677888999999999 55667664 5678999999887643221111100  00 1000


Q ss_pred             CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCc-EEEEeC
Q 004290          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDR  245 (763)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~-i~iwd~  245 (763)
                      ......    .........+.|+|+ +++|+....|.. ++.|.+
T Consensus       161 ~d~~~~----~~~~~~~~~~~wSPD-Gk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         161 TDWVYE----EEVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             CCHHHH----HHTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEE
T ss_pred             cceeee----eeecCCccccEECCC-CCccceeEecCCcCceEEE
Confidence            000000    001123456789998 678888776544 555544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.78  E-value=6.3e-07  Score=89.14  Aligned_cols=240  Identities=9%  Similarity=0.012  Sum_probs=150.8

Q ss_pred             ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      +++..+...+ .+..++++|||+++++...+++|..||......  .+ ......+.+++|.|+  ++++++...++.+.
T Consensus        19 ~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~--~~-~~~~~~~~gla~~~d--G~l~v~~~~~~~~~   92 (302)
T d2p4oa1          19 KIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--IH-ATVEGKVSGLAFTSN--GDLVATGWNADSIP   92 (302)
T ss_dssp             EEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--EE-EECSSEEEEEEECTT--SCEEEEEECTTSCE
T ss_pred             cEEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE--EE-EcCCCCcceEEEcCC--CCeEEEecCCceEE
Confidence            4455554322 588999999999999999999999998664432  23 345578999999999  78999988889999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  200 (763)
                      .|+.....+..      ..+. ........+.+++.+ ++.++++-+.++.+..+|...+..             .++..
T Consensus        93 ~~~~~~~~~~~------~~~~-~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~-------------~~~~~  151 (302)
T d2p4oa1          93 VVSLVKSDGTV------ETLL-TLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSG-------------SIWLE  151 (302)
T ss_dssp             EEEEECTTSCE------EEEE-ECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEE-------------EEEEE
T ss_pred             EEEecccccce------eecc-ccCCccccceeEEcc-CCCEEeeccccccceeeeccCCcc-------------eeEec
Confidence            88876533211      1111 112445688999998 668888888888999898876531             11110


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (763)
                      ...  ...............+.++.  ..++++.+..+.|..++..........          ..+     .    ...
T Consensus       152 ~~~--~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~----------~~~-----~----~~~  208 (302)
T d2p4oa1         152 HPM--LARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEP----------EIF-----V----EQT  208 (302)
T ss_dssp             CGG--GSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCC----------EEE-----E----ESC
T ss_pred             CCc--cceeeccCcccccccccccC--CceeeecCCCCeEEecccccccccccc----------ccc-----c----CCC
Confidence            000  00111112233456777765  357777788899998888754322110          000     0    001


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeec-CCCCeeeeec
Q 004290          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFT  330 (763)
Q Consensus       281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~  330 (763)
                      ....++|.++|++.++...++.|..++............. -.....++|.
T Consensus       209 ~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg  259 (302)
T d2p4oa1         209 NIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFG  259 (302)
T ss_dssp             CCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEEC
T ss_pred             CCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEc
Confidence            2566999999997777778999999977652211111111 2234567884

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=1.3e-06  Score=84.90  Aligned_cols=231  Identities=11%  Similarity=0.135  Sum_probs=133.2

Q ss_pred             cccceeeccccCceEEEEeCCCCCEEEEEeCCC---cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-
Q 004290           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDT---HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-  115 (763)
Q Consensus        40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~---~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-  115 (763)
                      ....+.+..+...+..-+|||||+.||-.....   .+.+.+..++.....  ..+........|+|+  +..++.... 
T Consensus        28 G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spd--g~~i~~~~~~  103 (269)
T d2hqsa1          28 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPD--GSKLAFALSK  103 (269)
T ss_dssp             SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE--ECCSSCEEEEEECTT--SSEEEEEECT
T ss_pred             CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEE--eeeecccccceecCC--CCeeeEeeec
Confidence            334445555677789999999999999765433   466677776665443  356778899999999  566665543 


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEE--ECCCCCCCCCCCCCCccc
Q 004290          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH--DFRQGSSCPPAGSSHQEC  193 (763)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iw--d~~~~~~~~~~~~~~~~~  193 (763)
                      ++...++.......         ................+++.+...+++...+|...+|  ++......          
T Consensus       104 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~----------  164 (269)
T d2hqsa1         104 TGSLNLYVMDLASG---------QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ----------  164 (269)
T ss_dssp             TSSCEEEEEETTTC---------CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE----------
T ss_pred             CCccceeecccccc---------cceeeeeccccccccccccccccceecccccCCceEeeeecccccce----------
Confidence            44444444332211         1222223344445556777565566666666655444  44443211          


Q ss_pred             ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEE-eCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccc
Q 004290          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (763)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sg-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (763)
                                   .+   ...........|+|++ +.++.. ...+...+|..........            ..     
T Consensus       165 -------------~~---~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~i~~~~~~~~~~~------------~~-----  210 (269)
T d2hqsa1         165 -------------RI---TWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQ------------VL-----  210 (269)
T ss_dssp             -------------EC---CCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCEE------------EC-----
T ss_pred             -------------ee---eccccccccccccccc-ceeEEEeecCCceeeeEeecccccce------------Ee-----
Confidence                         01   1123455677899984 555544 4445555554442211110            00     


Q ss_pred             cCCCCCccceeEEEEcCCCCEEEEEeC---CCeEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004290          273 SEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (763)
Q Consensus       273 ~~~g~~~~~i~~v~~spdg~~l~~~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (763)
                        . . ........|||||++|+-.+.   ...|+++++..+. ..........+...+|+|.
T Consensus       211 --~-~-~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         211 --S-S-TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             --C-C-SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECCC
T ss_pred             --e-c-CccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEEeCCCCcEEeEEeCCC
Confidence              0 1 113567889999999876554   3578999998754 3333334445566788884

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.61  E-value=2e-05  Score=77.84  Aligned_cols=130  Identities=14%  Similarity=0.104  Sum_probs=91.9

Q ss_pred             CCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC
Q 004290           80 SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN  159 (763)
Q Consensus        80 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  159 (763)
                      ...+.+..+..+  ..+..+++.|+  |+++++...+++|..|+....            ...+......+.+++|.| +
T Consensus        16 ~~~~v~~~~p~~--~~~e~iAv~pd--G~l~vt~~~~~~I~~i~p~g~------------~~~~~~~~~~~~gla~~~-d   78 (302)
T d2p4oa1          16 APAKIITSFPVN--TFLENLASAPD--GTIFVTNHEVGEIVSITPDGN------------QQIHATVEGKVSGLAFTS-N   78 (302)
T ss_dssp             CCEEEEEEECTT--CCEEEEEECTT--SCEEEEETTTTEEEEECTTCC------------EEEEEECSSEEEEEEECT-T
T ss_pred             CcccEEEECCCC--CCcCCEEECCC--CCEEEEeCCCCEEEEEeCCCC------------EEEEEcCCCCcceEEEcC-C
Confidence            344556666322  35889999999  799999999999988886631            344555677899999999 5


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCc
Q 004290          160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF  239 (763)
Q Consensus       160 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~  239 (763)
                      ++++++...++.+..|+.......          ...+.+..            .....+.+++.++ ++++++-+.++.
T Consensus        79 G~l~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~------------~~~~~n~i~~~~~-g~~~v~~~~~~~  135 (302)
T d2p4oa1          79 GDLVATGWNADSIPVVSLVKSDGT----------VETLLTLP------------DAIFLNGITPLSD-TQYLTADSYRGA  135 (302)
T ss_dssp             SCEEEEEECTTSCEEEEEECTTSC----------EEEEEECT------------TCSCEEEEEESSS-SEEEEEETTTTE
T ss_pred             CCeEEEecCCceEEEEEecccccc----------eeeccccC------------CccccceeEEccC-CCEEeecccccc
Confidence            678888888888888887654311          11111111            2235788999997 678888888888


Q ss_pred             EEEEeCCCCC
Q 004290          240 ARLYDRRMLP  249 (763)
Q Consensus       240 i~iwd~~~~~  249 (763)
                      +..+|...+.
T Consensus       136 i~~~~~~~~~  145 (302)
T d2p4oa1         136 IWLIDVVQPS  145 (302)
T ss_dssp             EEEEETTTTE
T ss_pred             ceeeeccCCc
Confidence            9888887653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.59  E-value=1.4e-06  Score=89.13  Aligned_cols=209  Identities=9%  Similarity=0.045  Sum_probs=108.6

Q ss_pred             EEEEeC--CCcEEE--EeCCCCeE--EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCC
Q 004290           65 LISGSD--DTHINV--WSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAIT  138 (763)
Q Consensus        65 Lasgs~--D~~v~i--Wd~~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~  138 (763)
                      |+.|+.  .+.|.+  +|.++++.  +..........+..|+|+|+  +++|.++.. +.+..|.+....+..       
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d--~~~ly~~~~-~~~~~~~i~~~~~~~-------   74 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE--RKNIYGAAM-KKWSSFAVKSPTEIV-------   74 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT--SSEEEEEEB-TEEEEEEEEETTEEE-------
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCC--CCEEEEEeC-CcEEEEEEeCCCCeE-------
Confidence            555643  445644  45556543  22222334556677999999  688877764 568888777422110       


Q ss_pred             CceeeecccCceeEEEEecCCCCEEEEEe--CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCC-Cce-eecc-CCCC
Q 004290          139 PSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC-GAK-RSLA-DPPK  213 (763)
Q Consensus       139 ~~~~~~~h~~~v~~l~~sp~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~  213 (763)
                       .............+++++++..++++..  ..++|..+.+......           ..+..... +.. .... ....
T Consensus        75 -~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~q  142 (365)
T d1jofa_          75 -HEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY-----------GNVFSVSETGKLEKNVQNYEYQ  142 (365)
T ss_dssp             -EEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE-----------EEEEEECTTCCEEEEEEEEECC
T ss_pred             -EEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCc-----------ceeEeeeecceecCcccCcccC
Confidence             1111112334566778884433333332  2456666554332100           00010000 000 0000 0001


Q ss_pred             CccceEEEEEeCCCCcEEEEEe-CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCC
Q 004290          214 QTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  292 (763)
Q Consensus       214 ~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~  292 (763)
                      ....+.++.|+|+ ++++++++ ....|.+|+......+....             ....  . ..+.....++|+|+++
T Consensus       143 ~~~h~h~v~~sPd-G~~l~v~d~g~d~v~~~~~~~~g~~~~~~-------------~~~~--~-~~g~gPr~i~f~pdg~  205 (365)
T d1jofa_         143 ENTGIHGMVFDPT-ETYLYSADLTANKLWTHRKLASGEVELVG-------------SVDA--P-DPGDHPRWVAMHPTGN  205 (365)
T ss_dssp             TTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTSCEEEEE-------------EEEC--S-STTCCEEEEEECTTSS
T ss_pred             CCCcceEEEECCC-CCEEEEeeCCCCEEEEEEccCCCceeecc-------------ceee--c-CCCCceEEEEECCCCc
Confidence            1224679999998 56666665 34678888765432211000             0000  0 1112478899999999


Q ss_pred             EEEEEeC-CCeEEEEECCCCC
Q 004290          293 EVLLSYS-GEHVYLMDVNHAG  312 (763)
Q Consensus       293 ~l~~~s~-d~~i~iwd~~~~~  312 (763)
                      ++++... ++.|.+|++....
T Consensus       206 ~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         206 YLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTT
T ss_pred             eEEEeccCCCEEEEEEecCCC
Confidence            9877775 8999999997743

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.52  E-value=6.8e-06  Score=79.39  Aligned_cols=227  Identities=7%  Similarity=-0.014  Sum_probs=133.7

Q ss_pred             eeeccccC--ceEEEEeCCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           44 RELEGHQG--CVNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        44 ~~l~gH~~--~V~~l~fsp~g~~Lasg-s~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      ..+.|+..  .-..|++.++|+++++. +..+.+..++..+....... ..-......+++.++  +.++++....+.++
T Consensus         5 ~~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~gvav~~~--g~i~v~d~~~~~i~   81 (260)
T d1rwia_           5 LPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGA--GTVYVTDFNNRVVT   81 (260)
T ss_dssp             CCCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC-CCSCCSCCCEEECTT--CCEEEEETTTEEEE
T ss_pred             EecccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec-cCCccCceEEEEcCC--CCEEEeeeeeceee
Confidence            34455443  34799999999976665 45567777766544333222 222345678999998  78887777666666


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  200 (763)
                      +++-...          ..+.... ....+..|++.+ +++++++-.....+..++.......             .   
T Consensus        82 ~~~~~~~----------~~~~~~~-~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~-------------~---  133 (260)
T d1rwia_          82 LAAGSNN----------QTVLPFD-GLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQT-------------V---  133 (260)
T ss_dssp             ECTTCSC----------CEECCCC-SCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCE-------------E---
T ss_pred             eeeeccc----------eeeeeee-eeeecccccccc-cceeEeeccccccccccccccceee-------------e---
Confidence            6554431          1122222 235678999998 5577766666666777765543311             0   


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (763)
                              . .........+++++|+ ++++++...++.|..+|........              +...      .-. 
T Consensus       134 --------~-~~~~~~~p~~i~~~~~-g~~~v~~~~~~~i~~~d~~~~~~~~--------------~~~~------~~~-  182 (260)
T d1rwia_         134 --------L-PFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVV--------------LPFT------DIT-  182 (260)
T ss_dssp             --------C-CCCSCCSCCEEEECTT-CCEEEEEGGGTEEEEECTTTCCEEE--------------CCCS------SCC-
T ss_pred             --------e-eecccCCcceeeecCC-CCEeeeccccccccccccccceeee--------------eecc------ccC-
Confidence                    0 0011223467899996 6788888888899999987542111              0000      111 


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004290          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (763)
Q Consensus       281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (763)
                      ....|++.++|.++++....+.|..++.............-..+..+++.++
T Consensus       183 ~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~  234 (260)
T d1rwia_         183 APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD  234 (260)
T ss_dssp             SEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTT
T ss_pred             CCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCC
Confidence            3688999999998777777889998877653321111111123445666664

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=3.6e-05  Score=74.28  Aligned_cols=173  Identities=10%  Similarity=0.078  Sum_probs=95.1

Q ss_pred             cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC---cEEEEECCCCCCCCCCCCCCCCceeeecccCc
Q 004290           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (763)
Q Consensus        73 ~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (763)
                      .|.|-|...+......  .+...+.+-+|+|+  |+.||......   .+.+.+....           ....+..+...
T Consensus        20 ~l~i~d~dG~~~~~l~--~~~~~~~sP~wSPD--Gk~IAf~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~   84 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVH--RSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANG-----------AVRQVASFPRH   84 (269)
T ss_dssp             EEEEEETTSCSCEEEE--EESSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTC-----------CEEEEECCSSC
T ss_pred             EEEEEcCCCCCcEEEe--cCCCceeeeEECCC--CCEEEEEEeeccCcceeeeecccC-----------ceeEEeeeecc
Confidence            5777787644433332  44667889999999  78888765433   3555555542           14455667788


Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCc
Q 004290          150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH  229 (763)
Q Consensus       150 v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  229 (763)
                      .....|+|++..++.....++...++........                     ....   ...........++++...
T Consensus        85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~---------------------~~~~---~~~~~~~~~~~~~~~~~~  140 (269)
T d2hqsa1          85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---------------------IRQV---TDGRSNNTEPTWFPDSQN  140 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---------------------EEEC---CCCSSCEEEEEECTTSSE
T ss_pred             cccceecCCCCeeeEeeecCCccceeeccccccc---------------------ceee---eecccccccccccccccc
Confidence            8999999965545444444544444433222210                     0000   011222334456666445


Q ss_pred             EEEEEeCCCcEEEE--eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-CeEEEE
Q 004290          230 LLLVGGSDAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-EHVYLM  306 (763)
Q Consensus       230 ~l~sgs~Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d-~~i~iw  306 (763)
                      .+++...++...+|  ++........                     .... .......|+|+++.++..+.+ +...+|
T Consensus       141 ~~~~~~~~g~~~i~~~~~~~~~~~~~---------------------~~~~-~~~~~~~~spdg~~~~~~~~~~~~~~i~  198 (269)
T d2hqsa1         141 LAFTSDQAGRPQVYKVNINGGAPQRI---------------------TWEG-SQNQDADVSSDGKFMVMVSSNGGQQHIA  198 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTSSCCEEC---------------------CCSS-SEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred             ceecccccCCceEeeeecccccceee---------------------eccc-ccccccccccccceeEEEeecCCceeee
Confidence            56666666654444  4443221100                     0111 136778899999998877663 344444

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.40  E-value=3.7e-05  Score=74.88  Aligned_cols=120  Identities=11%  Similarity=0.140  Sum_probs=77.1

Q ss_pred             cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEe
Q 004290          145 CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS  224 (763)
Q Consensus       145 ~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  224 (763)
                      .+......+++.+ +++++++....+.|++||.....               +..+         ..++.......|+++
T Consensus       154 ~~~~~~~~i~~d~-~g~i~v~d~~~~~V~~~d~~G~~---------------~~~~---------g~~g~~~~P~giavD  208 (279)
T d1q7fa_         154 KHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQY---------------LRQI---------GGEGITNYPIGVGIN  208 (279)
T ss_dssp             TTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTCCE---------------EEEE---------SCTTTSCSEEEEEEC
T ss_pred             ccccccceeeecc-ceeEEeeeccccceeeeecCCce---------------eeee---------cccccccCCcccccc
Confidence            3455677888887 55778788888899999864321               1111         112234456789999


Q ss_pred             CCCCcEEEEEeC-CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeE
Q 004290          225 STRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV  303 (763)
Q Consensus       225 p~~~~~l~sgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i  303 (763)
                      |+ ++++++-.. ++.|.+|+.. ++.+.++...                   ........|++.|+|. |+++..++.|
T Consensus       209 ~~-G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~-------------------~~~~~p~~vav~~dG~-l~V~~~n~~v  266 (279)
T d1q7fa_         209 SN-GEILIADNHNNFNLTIFTQD-GQLISALESK-------------------VKHAQCFDVALMDDGS-VVLASKDYRL  266 (279)
T ss_dssp             TT-CCEEEEECSSSCEEEEECTT-SCEEEEEEES-------------------SCCSCEEEEEEETTTE-EEEEETTTEE
T ss_pred             cC-CeEEEEECCCCcEEEEECCC-CCEEEEEeCC-------------------CCCCCEeEEEEeCCCc-EEEEeCCCeE
Confidence            97 677766544 4579999853 4433222110                   0111367899999997 5556689999


Q ss_pred             EEEECCCC
Q 004290          304 YLMDVNHA  311 (763)
Q Consensus       304 ~iwd~~~~  311 (763)
                      ++|.....
T Consensus       267 ~~fr~~~~  274 (279)
T d1q7fa_         267 YIYRYVQL  274 (279)
T ss_dssp             EEEECSCC
T ss_pred             EEEEeeee
Confidence            99998874

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.37  E-value=2e-05  Score=78.26  Aligned_cols=206  Identities=10%  Similarity=0.074  Sum_probs=127.1

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCC----CceEEEEEeeCCCCcEEEEEeC------------
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS----ANVFCTKFVPETSDELVVSGAG------------  115 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~----~~V~~v~~~p~~~~~~l~s~s~------------  115 (763)
                      .-..++|.++|.+|+++...+.|...|..++...... ....    ...+.+++.++  |.+.++-..            
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~-~~~~g~~~~~pndl~~d~~--G~lyvtd~~~~~~~~~~~~~~  148 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAK-KDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCS-BCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTT
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEe-ccccccccCCCcEEEECCC--CCEEEecCccCccccccccee
Confidence            3568999999998888877778899998765433211 1111    13578999998  777776432            


Q ss_pred             ---CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC----CEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004290          116 ---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP----HVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (763)
Q Consensus       116 ---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~  188 (763)
                         .|.|..++...           . ...+.......+.++|+|++.    .++++-+..+.|..||+.....+     
T Consensus       149 ~~~~G~v~~~~~dg-----------~-~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~-----  211 (314)
T d1pjxa_         149 QEKFGSIYCFTTDG-----------Q-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI-----  211 (314)
T ss_dssp             SSSCEEEEEECTTS-----------C-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE-----
T ss_pred             ccCCceEEEEeecC-----------c-eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccc-----
Confidence               12333333321           1 222223344567899998542    25556677888999987643211     


Q ss_pred             CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccc
Q 004290          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  268 (763)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  268 (763)
                         .....+.++.          .........+++.++ ++++++....+.|.+||...+..+..+..            
T Consensus       212 ---~~~~~~~~~~----------~~~~~~pdGiavD~~-GnlyVa~~~~g~I~~~dp~~g~~~~~i~~------------  265 (314)
T d1pjxa_         212 ---ENKKVWGHIP----------GTHEGGADGMDFDED-NNLLVANWGSSHIEVFGPDGGQPKMRIRC------------  265 (314)
T ss_dssp             ---EEEEEEEECC----------CCSSCEEEEEEEBTT-CCEEEEEETTTEEEEECTTCBSCSEEEEC------------
T ss_pred             ---ceeeEEEEcc----------ccccccceeeEEecC-CcEEEEEcCCCEEEEEeCCCCEEEEEEEC------------
Confidence               0011111111          111234568999997 68888888889999999887654332210            


Q ss_pred             cccccCCCCCccceeEEEEcCCCCEEEE-EeCCCeEEEEECCCCC
Q 004290          269 PMHLSEHGRSSLHLTHVTFSPNGEEVLL-SYSGEHVYLMDVNHAG  312 (763)
Q Consensus       269 ~~~~~~~g~~~~~i~~v~~spdg~~l~~-~s~d~~i~iwd~~~~~  312 (763)
                              . ....++++|.|+++.|++ .+.++.|..+++....
T Consensus       266 --------p-~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         266 --------P-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             --------S-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             --------C-CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence                    1 114889999999986654 4568999999887643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.32  E-value=0.00027  Score=68.48  Aligned_cols=68  Identities=21%  Similarity=0.227  Sum_probs=54.0

Q ss_pred             ccCCCCEEEEec-CCCcEEEEEcCcCcEEEEEecCC--cceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCc
Q 004290          635 LGQRGDYIASGS-DDGRWFIWEKQTGRLIKMLLGDE--AVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPS  704 (763)
Q Consensus       635 ~s~d~~~l~sgs-~Dg~i~iWd~~tg~~~~~l~gH~--~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~  704 (763)
                      +.++|+.+++-+ .++.|.+|+. +|+++.++....  ..-..|++.|++.++++. .++.|++|.....+|+
T Consensus       207 vD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~-~n~~v~~fr~~~~~~~  277 (279)
T d1q7fa_         207 INSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLAS-KDYRLYIYRYVQLAPV  277 (279)
T ss_dssp             ECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEE-TTTEEEEEECSCCCCT
T ss_pred             cccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEe-CCCeEEEEEeeeecCC
Confidence            788999887754 4567999984 699988886543  457899999999877764 6899999999888765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.29  E-value=3e-05  Score=74.61  Aligned_cols=197  Identities=6%  Similarity=0.015  Sum_probs=128.5

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004290           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~  131 (763)
                      ....|+++++|+++++....+.+++++-.+...+...  .....+.++++.++  ++++++-..+..+..++......  
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~--~~~~~p~~iavd~~--g~i~v~d~~~~~~~~~~~~~~~~--  131 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF--DGLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKTQ--  131 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC--CSCCSEEEEEECTT--CCEEEEEGGGTEEEEECTTCSSC--
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee--eeeeeccccccccc--ceeEeecccccccccccccccee--
Confidence            3578899999998888877777777766555544333  33356789999998  68887766677777777654211  


Q ss_pred             CCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCC
Q 004290          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (763)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (763)
                             ..... .-......|++.| +++++++...++.|..+|.......             .            ..
T Consensus       132 -------~~~~~-~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~-------------~------------~~  177 (260)
T d1rwia_         132 -------TVLPF-TGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQV-------------V------------LP  177 (260)
T ss_dssp             -------EECCC-CSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEE-------------E------------CC
T ss_pred             -------eeeee-cccCCcceeeecC-CCCEeeeccccccccccccccceee-------------e------------ee
Confidence                   01111 1234567899998 5678888888888999987654311             0            00


Q ss_pred             CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC
Q 004290          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (763)
Q Consensus       212 ~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg  291 (763)
                      .........++++++ ++++++....+.|..++....... .+             ..     .+..  ..+.|+++++|
T Consensus       178 ~~~~~~p~gi~~d~~-g~l~vsd~~~~~i~~~~~~~~~~~-~~-------------~~-----~~~~--~P~~i~~d~~g  235 (260)
T d1rwia_         178 FTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTST-VL-------------PF-----TGLN--TPLAVAVDSDR  235 (260)
T ss_dssp             CSSCCSEEEEEECTT-CCEEEEETTTTEEEEECTTCSCCE-EC-------------CC-----CSCC--CEEEEEECTTC
T ss_pred             ccccCCCccceeeee-eeeeeeecCCCEEEEEeCCCCeEE-EE-------------cc-----CCCC--CeEEEEEeCCC
Confidence            112334678999997 678887777888888876543210 00             00     0111  36889999999


Q ss_pred             CEEEEEeCCCeEEEEECCC
Q 004290          292 EEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       292 ~~l~~~s~d~~i~iwd~~~  310 (763)
                      ..+++-..++.|+.++...
T Consensus       236 ~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         236 TVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             CEEEEEGGGTEEEEECCCG
T ss_pred             CEEEEECCCCEEEEEeCCC
Confidence            8777767778777665543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.25  E-value=0.00016  Score=71.76  Aligned_cols=237  Identities=10%  Similarity=0.052  Sum_probs=134.2

Q ss_pred             eeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC--CcEEE
Q 004290           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AEVRL  121 (763)
Q Consensus        44 ~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d--g~I~i  121 (763)
                      ..+......+..++|.++|++.++-...+.|..|+..+++....+ .........++|.++  |+++++...+  ....+
T Consensus        33 ~~~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~-~~~~~~p~gla~~~d--G~l~va~~~~~~~~~~i  109 (319)
T d2dg1a1          33 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKD--GRLFVCYLGDFKSTGGI  109 (319)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTT--SCEEEEECTTSSSCCEE
T ss_pred             EEeccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE-eCCCCCeeEEEECCC--CCEEEEecCCCccceeE
Confidence            333334445678999999998888888899999999887666555 455567899999999  7877765432  23344


Q ss_pred             EECCCCCCCCCCCCCCCCceeeecc---cCceeEEEEecCCCCEEEEEeCC------CcEEEEECCCCCCCCCCCCCCcc
Q 004290          122 FNLSRFSGRGLDDNAITPSALYQCH---TRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGSSCPPAGSSHQE  192 (763)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~sp~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~  192 (763)
                      +.+......         +.....+   ...++.+++.| ++++.++....      +.+..++.....           
T Consensus       110 ~~~~~~~~~---------~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-----------  168 (319)
T d2dg1a1         110 FAATENGDN---------LQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRT-----------  168 (319)
T ss_dssp             EEECTTSCS---------CEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCC-----------
T ss_pred             EEEcCCCce---------eeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccce-----------
Confidence            443321111         2222111   23467888988 45665553221      123333322211           


Q ss_pred             cceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccc
Q 004290          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (763)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (763)
                                  ...+.   ......+.++|+|++..++++-+..+.|..||+.........         ....  ...
T Consensus       169 ------------~~~~~---~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~---------~~~~--~~~  222 (319)
T d2dg1a1         169 ------------VTPII---QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP---------FGAT--IPY  222 (319)
T ss_dssp             ------------EEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE---------EEEE--EEE
T ss_pred             ------------eEEEe---eccceeeeeeeccccceEEEecccCCceEEEEEcCCCceecc---------ccce--eee
Confidence                        00000   012235789999984335566667889999998643211000         0000  000


Q ss_pred             cCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecC------CCCeeeeeccCC
Q 004290          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG------DASKIMSFTPTL  333 (763)
Q Consensus       273 ~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~p~~  333 (763)
                      ...+..  ....+++.++|++.++....+.|.+|+.. ++.......+.      .....++|.|..
T Consensus       223 ~~~~~~--~PdGl~vD~~G~l~Va~~~~g~V~~~~p~-G~~l~~i~~P~~~~~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         223 YFTGHE--GPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGT  286 (319)
T ss_dssp             ECCSSS--EEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred             ccCCcc--ceeeeeEcCCCCEEEEEcCCCEEEEECCC-CcEEEEEeCCCcCCCcCceeeeEEEeCCC
Confidence            001111  25679999999988888889999999964 44333332221      133456666643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.23  E-value=6.7e-05  Score=76.15  Aligned_cols=186  Identities=8%  Similarity=0.020  Sum_probs=103.6

Q ss_pred             CceEEEEEeeCCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCCCceee--ecccCceeEEEEecCCCCEEEEEeCCC
Q 004290           94 ANVFCTKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDG  170 (763)
Q Consensus        94 ~~V~~v~~~p~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~s~s~dg  170 (763)
                      ..+.++.|+|+  ++++++++. ...|.+|+..... ..      ......  .......+.++|+|++..+.++.-.++
T Consensus       145 ~h~h~v~~sPd--G~~l~v~d~g~d~v~~~~~~~~g-~~------~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~  215 (365)
T d1jofa_         145 TGIHGMVFDPT--ETYLYSADLTANKLWTHRKLASG-EV------ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN  215 (365)
T ss_dssp             CCEEEEEECTT--SSEEEEEETTTTEEEEEEECTTS-CE------EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             CcceEEEECCC--CCEEEEeeCCCCEEEEEEccCCC-ce------eeccceeecCCCCceEEEEECCCCceEEEeccCCC
Confidence            35789999999  787777654 4578888866421 10      111111  123457889999996544555666789


Q ss_pred             cEEEEECCCCCCCCCCCCCCcccceEEEecC-CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC-C-----CcEEEE
Q 004290          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLR-CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-D-----AFARLY  243 (763)
Q Consensus       171 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~-D-----g~i~iw  243 (763)
                      +|.+|++...+.....       ...-..+. ...................+.++|+ +++|+++.. +     ..|..|
T Consensus       216 ~V~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spd-G~~lyvsnr~~~~~~~~~i~~~  287 (365)
T d1jofa_         216 RICEYVIDPATHMPVY-------THHSFPLIPPGIPDRDPETGKGLYRADVCALTFS-GKYMFASSRANKFELQGYIAGF  287 (365)
T ss_dssp             EEEEEEECTTTCCEEE-------EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT-SSEEEEEEEESSTTSCCEEEEE
T ss_pred             EEEEEEecCCCceEEE-------EeeeeccccccccccccccccccCCccceEECCC-CCEEEEEcccCCCccceEEEEE
Confidence            9999998776532000       00000000 0000001111123345678899998 677766642 2     237777


Q ss_pred             eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC-CCCEEEEEeC-CCeEEEEECCCC
Q 004290          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYS-GEHVYLMDVNHA  311 (763)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s~-d~~i~iwd~~~~  311 (763)
                      ++.....+....            ......   ..+....+++++| +|++|+++.. ++.|.+|+++..
T Consensus       288 ~~~~~g~~~~~~------------~~~~~~---~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         288 KLRDCGSIEKQL------------FLSPTP---TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EECTTSCEEEEE------------EEEECS---SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EecCCCceeeEe------------EeeEEE---cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            766432221100            000000   1111356689998 8998888764 899999998763

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.21  E-value=0.00013  Score=72.06  Aligned_cols=250  Identities=8%  Similarity=0.063  Sum_probs=136.1

Q ss_pred             cCceEEEEeCCCCCEEEEEeC-------CCcEEEEeCCCCeEEEEEcc---CCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290           50 QGCVNAISWNSKGSLLISGSD-------DTHINVWSYSSRKLLHSIET---GHSANVFCTKFVPETSDELVVSGAGDAEV  119 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~-------D~~v~iWd~~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~~l~s~s~dg~I  119 (763)
                      -.....++|.|+|+++++...       +++|..||..++........   ........+.|.++  ++.|+++...+.|
T Consensus        17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~d--g~~l~vad~~~~i   94 (314)
T d1pjxa_          17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD--ANQLFVADMRLGL   94 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS--SSEEEEEETTTEE
T ss_pred             CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCC--CCEEEEEECCCeE
Confidence            344677899999998876533       46789999988765443311   11234678999999  6778778777778


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeeecc-cCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290          120 RLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (763)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  198 (763)
                      ...+.........       .....+. -...+.+++.+ ++.+.+|-.. +.+..|+.....         ......++
T Consensus        95 ~~~~~~g~~~~~~-------~~~~~g~~~~~pndl~~d~-~G~lyvtd~~-~~~~~~~~~~~~---------~~~~G~v~  156 (314)
T d1pjxa_          95 LVVQTDGTFEEIA-------KKDSEGRRMQGCNDCAFDY-EGNLWITAPA-GEVAPADYTRSM---------QEKFGSIY  156 (314)
T ss_dssp             EEEETTSCEEECC-------SBCTTSCBCBCCCEEEECT-TSCEEEEECB-CBCTTSCCCBTT---------SSSCEEEE
T ss_pred             EEEeCCCcEEEEE-------eccccccccCCCcEEEECC-CCCEEEecCc-cCccccccccee---------ccCCceEE
Confidence            8888764211100       0000111 12357788888 4566555322 111111111000         00001111


Q ss_pred             ecCC-CceeeccCCCCCccceEEEEEeCCCC----cEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccccccc
Q 004290          199 DLRC-GAKRSLADPPKQTLSLKSCDISSTRP----HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (763)
Q Consensus       199 ~~~~-~~~~~~~~~~~~~~~v~~i~~~p~~~----~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (763)
                      .+.. +....+.   ......+.++|+|++.    .++++-+..+.|..||+.....+...          +.+  ..+ 
T Consensus       157 ~~~~dg~~~~~~---~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~----------~~~--~~~-  220 (314)
T d1pjxa_         157 CFTTDGQMIQVD---TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK----------KVW--GHI-  220 (314)
T ss_dssp             EECTTSCEEEEE---EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE----------EEE--EEC-
T ss_pred             EEeecCceeEee---CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee----------eEE--EEc-
Confidence            1111 1111110   0112346889998632    24555567788999987643211100          000  000 


Q ss_pred             CCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCCCc
Q 004290          274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL  336 (763)
Q Consensus       274 ~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  336 (763)
                       .+........+++.++|+..++....+.|.+||...+............+..++|.|+.+.+
T Consensus       221 -~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~l  282 (314)
T d1pjxa_         221 -PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTI  282 (314)
T ss_dssp             -CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEE
T ss_pred             -cccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEE
Confidence             01111125679999999988888889999999988755333344445566789998876544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.12  E-value=0.00022  Score=70.71  Aligned_cols=215  Identities=12%  Similarity=0.091  Sum_probs=125.8

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCC----CcEEEEeCCCCeEEEEEcc-CCCCceEEEEEeeCCCCcEEEEEeCC------
Q 004290           48 GHQGCVNAISWNSKGSLLISGSDD----THINVWSYSSRKLLHSIET-GHSANVFCTKFVPETSDELVVSGAGD------  116 (763)
Q Consensus        48 gH~~~V~~l~fsp~g~~Lasgs~D----~~v~iWd~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~l~s~s~d------  116 (763)
                      ........|+|+++|+++++...+    +.|...+..++........ .-...+..+++.|+  |++.++....      
T Consensus        79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~--G~l~vtd~~~~~~~~~  156 (319)
T d2dg1a1          79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK--GGFYFTDFRGYSTNPL  156 (319)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT--SCEEEEECCCBTTBCC
T ss_pred             CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEec--cceeecccccccccCc
Confidence            344567899999999988876432    3355555555544433311 12345788999998  7777764321      


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (763)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  196 (763)
                      +.+..++...           ..+..+...-...+.|+|+|++..++++-+..+.|..||+......         ....
T Consensus       157 g~v~~~~~dg-----------~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~---------~~~~  216 (319)
T d2dg1a1         157 GGVYYVSPDF-----------RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT---------IQPF  216 (319)
T ss_dssp             EEEEEECTTS-----------CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS---------EEEE
T ss_pred             ceeEEEeccc-----------ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCce---------eccc
Confidence            2244444332           1133333334557889999965556667777899999998754311         0000


Q ss_pred             EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (763)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (763)
                      .        ...............++++++ +++.++....+.|.+||. .++.+..+..+..+              .+
T Consensus       217 ~--------~~~~~~~~~~~~PdGl~vD~~-G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~--------------~~  272 (319)
T d2dg1a1         217 G--------ATIPYYFTGHEGPDSCCIDSD-DNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD--------------EG  272 (319)
T ss_dssp             E--------EEEEEECCSSSEEEEEEEBTT-CCEEEEEETTTEEEEECT-TSCEEEEEECTTGG--------------GT
T ss_pred             c--------ceeeeccCCccceeeeeEcCC-CCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcC--------------CC
Confidence            0        000000111223568999997 788888888999999996 56655443221110              11


Q ss_pred             CCccceeEEEEcCCCCEEEEEeCC------CeEEEEECC
Q 004290          277 RSSLHLTHVTFSPNGEEVLLSYSG------EHVYLMDVN  309 (763)
Q Consensus       277 ~~~~~i~~v~~spdg~~l~~~s~d------~~i~iwd~~  309 (763)
                      +.. .+++++|.|++..+++.+.+      +.|+..+..
T Consensus       273 ~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~  310 (319)
T d2dg1a1         273 HML-RSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  310 (319)
T ss_dssp             CSC-BCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             cCc-eeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCC
Confidence            222 48899999988777766542      345555443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=0.00046  Score=72.11  Aligned_cols=112  Identities=8%  Similarity=0.078  Sum_probs=73.8

Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccC---CCCceEEEEEeeCCCCcEEEEEe---------CCCcEEEEE
Q 004290           56 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG---HSANVFCTKFVPETSDELVVSGA---------GDAEVRLFN  123 (763)
Q Consensus        56 l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~---h~~~V~~v~~~p~~~~~~l~s~s---------~dg~I~iwd  123 (763)
                      ..|.+++.++.. ..+|.|.+||+.+++....+ ..   ....+....|+|+  +++++...         ..+.+.++|
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~SpD--~~~vl~~~~~~~~~r~s~~~~~~i~d   97 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISPD--REYALFSYNVEPIYQHSYTGYYVLSK   97 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECTT--SSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEE-cCccccccccceeEECCC--CCeEEEEEcccceeEeeccccEEEEE
Confidence            358888887654 45789999999988754434 22   2346778889999  67777653         356788999


Q ss_pred             CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (763)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~  181 (763)
                      +.++...        .+.........+....|+|++ +.+|-.. ++.|.+.+...+.
T Consensus        98 ~~~~~~~--------~l~~~~~~~~~l~~~~wSPDG-~~iafv~-~~nl~~~~~~~~~  145 (465)
T d1xfda1          98 IPHGDPQ--------SLDPPEVSNAKLQYAGWGPKG-QQLIFIF-ENNIYYCAHVGKQ  145 (465)
T ss_dssp             SSSCCCE--------ECCCTTCCSCCCSBCCBCSST-TCEEEEE-TTEEEEESSSSSC
T ss_pred             ccCCcee--------eccCccCCccccceeeeccCC-ceEEEEe-cceEEEEecCCCc
Confidence            9875421        122222334456678899955 5554443 5778888877654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=0.00059  Score=71.26  Aligned_cols=194  Identities=7%  Similarity=-0.034  Sum_probs=105.8

Q ss_pred             CceEEEEeCCCCCEEEEEe---------CCCcEEEEeCCCCeEEEEEc-cCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           51 GCVNAISWNSKGSLLISGS---------DDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        51 ~~V~~l~fsp~g~~Lasgs---------~D~~v~iWd~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      ..+....|||||++|+...         ..+.+.|+|+.++....... ......+....|+|+  |+.||-.. ++.|.
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPD--G~~iafv~-~~nl~  137 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK--GQQLIFIF-ENNIY  137 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS--TTCEEEEE-TTEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccC--CceEEEEe-cceEE
Confidence            4677889999999887763         35678899999886543221 223345667899999  68887765 67788


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeeccc---------CceeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCCC-------
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHT---------RRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSC-------  183 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~~~~~~-------  183 (763)
                      +.+...+........ ...-..+.+..         +.-..+-|||+ ++.|+... .+..|..+.+......       
T Consensus       138 ~~~~~~~~~~~lt~~-g~~~~i~nG~~d~vyeee~~~~~~a~~WSPD-gk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~  215 (465)
T d1xfda1         138 YCAHVGKQAIRVVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKP  215 (465)
T ss_dssp             EESSSSSCCEEEECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEE
T ss_pred             EEecCCCceEEEecc-cCcceeeccccchhhhhhhccccceEEECCC-CCeEEEEEecccccceeecccccccccceeee
Confidence            888765321110000 00000111111         11246789995 45665554 4566766655432110       


Q ss_pred             ---CCCCCCCcccceEEEecCCCceeeccCCCC----CccceEEEEEeCCCCcEEEEEeC-C---CcEEEEeCCCCCC
Q 004290          184 ---PPAGSSHQECRNILLDLRCGAKRSLADPPK----QTLSLKSCDISSTRPHLLLVGGS-D---AFARLYDRRMLPP  250 (763)
Q Consensus       184 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~i~~~p~~~~~l~sgs~-D---g~i~iwd~~~~~~  250 (763)
                         +............++++..+........+.    ...-+..+.|.|+ +++++.... +   ..|.++|..+++.
T Consensus       216 ~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d-~~~~~~~~nR~q~~~~i~~~d~~tg~~  292 (465)
T d1xfda1         216 YHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS-TKVAVTWLNRAQNVSILTLCDATTGVC  292 (465)
T ss_dssp             EECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS-SEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred             eeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCC-CeEEEEEEccccccceEEEEcCCCCcE
Confidence               111111112234456665444332222211    2234678899997 455544332 2   3588889888753

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.89  E-value=0.0018  Score=62.87  Aligned_cols=195  Identities=11%  Similarity=0.110  Sum_probs=120.9

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCC---CCceEEEEEeeCCCCcEEEEEeC----CCcEEEE
Q 004290           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH---SANVFCTKFVPETSDELVVSGAG----DAEVRLF  122 (763)
Q Consensus        50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h---~~~V~~v~~~p~~~~~~l~s~s~----dg~I~iw  122 (763)
                      ...+.++++.++|.++++ +.+ -|.++|..+++.........   ...++.+.+.|+  |++.++...    .+.-.+|
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~--G~iw~~~~~~~~~~~~g~l~  133 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIY  133 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCC--CCEEEEeccccccccceeEe
Confidence            356889999999887765 444 58899999887544331111   235788999998  677666542    2234556


Q ss_pred             ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (763)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (763)
                      .+..+.           +..+...-...+.++|++++..++++-+..+.|..+++.......      ......+.+   
T Consensus       134 ~~~~g~-----------~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~------~~~~~~~~~---  193 (295)
T d2ghsa1         134 HVAKGK-----------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP------TGKAEVFID---  193 (295)
T ss_dssp             EEETTE-----------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB------SSCCEEEEE---
T ss_pred             eecCCc-----------EEEEeeccCCcceeeecCCCceEEEeecccceeeEeeeccccccc------ccceEEEec---
Confidence            554321           222223344568899999666677777888999999875432110      000111111   


Q ss_pred             CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccce
Q 004290          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (763)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i  282 (763)
                              ..........++++.+ +++.++.-..+.|..||.. ++.+..+..+                     ...+
T Consensus       194 --------~~~~~g~pdG~~vD~~-GnlWva~~~~g~V~~~dp~-G~~~~~i~lP---------------------~~~~  242 (295)
T d2ghsa1         194 --------STGIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDTD-GNHIARYEVP---------------------GKQT  242 (295)
T ss_dssp             --------CTTSSSEEEEEEECTT-SCEEEEEETTTEEEEECTT-CCEEEEEECS---------------------CSBE
T ss_pred             --------cCcccccccceEEcCC-CCEEeeeeCCCceEEecCC-CcEeeEecCC---------------------CCce
Confidence                    1223345788999997 6777777778889999964 5544333211                     1148


Q ss_pred             eEEEEc-CCCCEEEEEeC
Q 004290          283 THVTFS-PNGEEVLLSYS  299 (763)
Q Consensus       283 ~~v~~s-pdg~~l~~~s~  299 (763)
                      ++++|- ||.+.|++.+.
T Consensus       243 T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         243 TCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEEEESTTSCEEEEEEB
T ss_pred             EEEEEeCCCCCEEEEEEC
Confidence            999996 78777766543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.38  E-value=0.03  Score=53.78  Aligned_cols=221  Identities=10%  Similarity=-0.006  Sum_probs=127.4

Q ss_pred             EEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004290           54 NAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  132 (763)
Q Consensus        54 ~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~  132 (763)
                      .+..|.+ ++.++.+--..+.|.-||..+++.. .+  .....+.++++.++  +.++++ +.+ .|.++|..+++..  
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~--~~~~~~~~i~~~~d--g~l~va-~~~-gl~~~d~~tg~~~--   91 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VH--ALPFMGSALAKISD--SKQLIA-SDD-GLFLRDTATGVLT--   91 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE--ECSSCEEEEEEEET--TEEEEE-ETT-EEEEEETTTCCEE--
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EE--ECCCCcEEEEEecC--CCEEEE-EeC-ccEEeecccceee--
Confidence            3556876 5556666667789999999988654 23  23456889999988  666655 444 5889998864311  


Q ss_pred             CCCCCCCceeeec--ccCceeEEEEecCCCCEEEEEeC----CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290          133 DDNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASE----DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (763)
Q Consensus       133 ~~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (763)
                            .+.....  ....++.+.+.| ++.+.++...    .+.-.+|.+..++                       ..
T Consensus        92 ------~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~-----------------------~~  141 (295)
T d2ghsa1          92 ------LHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGK-----------------------VT  141 (295)
T ss_dssp             ------EEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTE-----------------------EE
T ss_pred             ------EEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeecCCc-----------------------EE
Confidence                  1111111  123578888888 4455444322    1223344333322                       11


Q ss_pred             eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004290          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (763)
Q Consensus       207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~  286 (763)
                      .+.   ......+.++|++++..++++-+..+.|..|++........-        ....+    ....+... ....++
T Consensus       142 ~~~---~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~--------~~~~~----~~~~~~~g-~pdG~~  205 (295)
T d2ghsa1         142 KLF---ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG--------KAEVF----IDSTGIKG-GMDGSV  205 (295)
T ss_dssp             EEE---EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS--------CCEEE----EECTTSSS-EEEEEE
T ss_pred             EEe---eccCCcceeeecCCCceEEEeecccceeeEeeeccccccccc--------ceEEE----eccCcccc-cccceE
Confidence            111   112235789999985556667777888999987532211000        00000    00011122 377899


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeec
Q 004290          287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT  330 (763)
Q Consensus       287 ~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  330 (763)
                      +..+|.+.++....+.|..||.. ++.......+...+..++|-
T Consensus       206 vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         206 CDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             ECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEE
T ss_pred             EcCCCCEEeeeeCCCceEEecCC-CcEeeEecCCCCceEEEEEe
Confidence            99999987777788999999965 45444444444556677775

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.11  E-value=0.035  Score=52.39  Aligned_cols=100  Identities=10%  Similarity=0.052  Sum_probs=59.9

Q ss_pred             EeCCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-CC-----cEEEEECCCCC
Q 004290           57 SWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA-----EVRLFNLSRFS  128 (763)
Q Consensus        57 ~fsp~--g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-dg-----~I~iwd~~~~~  128 (763)
                      ..+||  |+.+|-.+. +.|.+.|+.+++.. .+ ..+.+.+...+|+|+  |+.|+.... ++     .|.+++...+.
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~L-t~~~~~~~~p~~SPD--G~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KI-VSNLGVINNARFFPD--GRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EE-ECSSSEEEEEEECTT--SSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EE-ecCCCcccCEEECCC--CCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            35788  998887654 56888899988765 34 456678899999999  787776542 22     36666665432


Q ss_pred             CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEE
Q 004290          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA  166 (763)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~  166 (763)
                      ...+.    ..-..............|+|++ +.++..
T Consensus        80 ~~~lt----~~~~~~~~~~~~~~~~~~spdg-~~l~~~  112 (281)
T d1k32a2          80 IKRIT----YFSGKSTGRRMFTDVAGFDPDG-NLIIST  112 (281)
T ss_dssp             EEECC----CCCEEEETTEECSEEEEECTTC-CEEEEE
T ss_pred             eEEee----ecCCCccCccccccccccCCCC-CEEEEE
Confidence            11100    0000111222345678899944 555443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.065  Score=50.25  Aligned_cols=211  Identities=9%  Similarity=0.042  Sum_probs=125.7

Q ss_pred             cceeeccccCceEEEEeCCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290           42 QERELEGHQGCVNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (763)
Q Consensus        42 ~~~~l~gH~~~V~~l~fsp~g~~Lasg-s~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~  120 (763)
                      ....+..+...+.+|+|.+..+.|.-. ..++.|+..++..+.....+ ......+.++++..-+ +.+..+-...+.|.
T Consensus        27 ~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~-~~~~~~p~~iAvD~~~-~~lY~~d~~~~~I~  104 (263)
T d1npea_          27 AKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLG-RTIFWTDSQLDRIE  104 (263)
T ss_dssp             CEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTT-TEEEEEETTTTEEE
T ss_pred             cccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE-EeccccccEEEEeccC-CeEEEeccCCCEEE
Confidence            334455555668889999877666544 56678888888766544444 3344578999998763 45555666678999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccceEEE
Q 004290          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILL  198 (763)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~  198 (763)
                      +.++.....          ...+......+..|++.|..+.++++-...+.  |..-++.....            ..+.
T Consensus       105 ~~~~dg~~~----------~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~------------~~i~  162 (263)
T d1npea_         105 VAKMDGTQR----------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR------------RILA  162 (263)
T ss_dssp             EEETTSCSC----------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC------------EEEE
T ss_pred             EEecCCceE----------EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc------------eeee
Confidence            999875221          11222234678899999977777766543333  44445443221            1111


Q ss_pred             ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (763)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (763)
                      .             .......++++++.+..++.+-...+.|...|+...... .+            .       .+..
T Consensus       163 ~-------------~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~-~v------------~-------~~~~  209 (263)
T d1npea_         163 Q-------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KV------------L-------EGLQ  209 (263)
T ss_dssp             C-------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EE------------E-------ECCC
T ss_pred             e-------------ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE-EE------------E-------CCCC
Confidence            0             112345789999875444455456788888888643211 00            0       1111


Q ss_pred             ccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCCc
Q 004290          279 SLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGG  313 (763)
Q Consensus       279 ~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~~~~  313 (763)
                        ...+|++.  +.+|+.+. ..+.|...|..+++.
T Consensus       210 --~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~  241 (263)
T d1npea_         210 --YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE  241 (263)
T ss_dssp             --SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred             --CcEEEEEE--CCEEEEEECCCCEEEEEECCCCcc
Confidence              13467765  44555554 578999999988653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.89  Score=42.09  Aligned_cols=227  Identities=7%  Similarity=0.001  Sum_probs=129.4

Q ss_pred             ccCceEEEEeCCCCCEEEEE-eCCCcEEEEeCCCCe---EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290           49 HQGCVNAISWNSKGSLLISG-SDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasg-s~D~~v~iWd~~~~~---~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~  124 (763)
                      ....+.+|+|.+.++.|.-. ...+.|.-.++....   ....+.......+.++++.+.+ +++..+-...+.|.+.++
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~-~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEET
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc-ceEEEEecCCCEEEeEec
Confidence            44567899999877766544 455667766664321   1122213334567789998764 566666667788999998


Q ss_pred             CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (763)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (763)
                      ....          ..............|+++|..+.++++-. ..+.|...++.....            ..+..    
T Consensus       107 ~g~~----------~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~------------~~l~~----  160 (266)
T d1ijqa1         107 KGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT----  160 (266)
T ss_dssp             TSSS----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEEC----
T ss_pred             CCce----------EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce------------ecccc----
Confidence            7421          12233444567889999997766666643 334566666654321            11111    


Q ss_pred             ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (763)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  283 (763)
                               ......+++++++.++.++.+-...+.|...|+...... .+.                 ....... ...
T Consensus       161 ---------~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~-~~~-----------------~~~~~~~-~p~  212 (266)
T d1ijqa1         161 ---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TIL-----------------EDEKRLA-HPF  212 (266)
T ss_dssp             ---------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE-----------------ECTTTTS-SEE
T ss_pred             ---------cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE-EEE-----------------eCCCccc-ccE
Confidence                     112346789999875545555566788998888643211 100                 0000001 245


Q ss_pred             EEEEcCCCCEEEEE-eCCCeEEEEECCCCCccceEeec-CCCCeeeeeccC
Q 004290          284 HVTFSPNGEEVLLS-YSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPT  332 (763)
Q Consensus       284 ~v~~spdg~~l~~~-s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~  332 (763)
                      +|++.  +.+|+.+ ..++.|+..+..++......... ..+.....++|.
T Consensus       213 ~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~~p~~i~v~~~~  261 (266)
T d1ijqa1         213 SLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNL  261 (266)
T ss_dssp             EEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGG
T ss_pred             EEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEcCCCCceEEEEECCc
Confidence            67766  3455555 45789999988886644433332 334455666664

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.46  E-value=0.86  Score=42.11  Aligned_cols=192  Identities=8%  Similarity=0.054  Sum_probs=109.2

Q ss_pred             CEEEEEeCCCcEEEEeCCCCe-----EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004290           63 SLLISGSDDTHINVWSYSSRK-----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI  137 (763)
Q Consensus        63 ~~Lasgs~D~~v~iWd~~~~~-----~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~  137 (763)
                      .+|+-+.. +.|+-.+++...     ....+ ..+...+.+++|.+.. +.++.+-..++.|+..++.....        
T Consensus         2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~-~~~~~~~~~ld~D~~~-~~iywsd~~~~~I~~~~l~g~~~--------   70 (263)
T d1npea_           2 THLLFAQT-GKIERLPLERNTMKKTEAKAFL-HIPAKVIIGLAFDCVD-KVVYWTDISEPSIGRASLHGGEP--------   70 (263)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEE-EEEEEEEEEEEEETTT-TEEEEEETTTTEEEEEESSSCCC--------
T ss_pred             CEEEEeCC-CeEEEEECCCcccccccccccc-ccCCCcEEEEEEEeCC-CEEEEEECCCCeEEEEEcccCCc--------
Confidence            34443333 466666665432     11112 2334567889999873 44444445678888888875221        


Q ss_pred             CCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccc
Q 004290          138 TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS  217 (763)
Q Consensus       138 ~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (763)
                        ...+..-...+..|++...++++.++-...+.|.+.++.....            ..+..             .....
T Consensus        71 --~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~------------~~l~~-------------~~l~~  123 (263)
T d1npea_          71 --TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR------------RVLFD-------------TGLVN  123 (263)
T ss_dssp             --EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-------------SSCSS
T ss_pred             --EEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE------------EEEec-------------ccccC
Confidence              2222223356889999875666777777788999999875531            11111             11235


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCcEEEEeCCC-CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEE
Q 004290          218 LKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  296 (763)
Q Consensus       218 v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~  296 (763)
                      +..++++|..+.++.+-...+..+||.... +.....+             ..     .+..  ..+++++.+.++.|+.
T Consensus       124 p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i-------------~~-----~~~~--~P~glaiD~~~~~lYw  183 (263)
T d1npea_         124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL-------------AQ-----DNLG--LPNGLTFDAFSSQLCW  183 (263)
T ss_dssp             EEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE-------------EC-----TTCS--CEEEEEEETTTTEEEE
T ss_pred             CcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceee-------------ee-----eccc--ccceEEEeecCcEEEE
Confidence            689999998665555543333444553332 1111100             00     0111  3678999988887766


Q ss_pred             Ee-CCCeEEEEECCCCC
Q 004290          297 SY-SGEHVYLMDVNHAG  312 (763)
Q Consensus       297 ~s-~d~~i~iwd~~~~~  312 (763)
                      +. ..+.|...+++...
T Consensus       184 ~d~~~~~I~~~~~~g~~  200 (263)
T d1npea_         184 VDAGTHRAECLNPAQPG  200 (263)
T ss_dssp             EETTTTEEEEEETTEEE
T ss_pred             EeCCCCEEEEEECCCCC
Confidence            64 57899999987744

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=1.2  Score=41.24  Aligned_cols=187  Identities=11%  Similarity=0.071  Sum_probs=108.2

Q ss_pred             CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCcee
Q 004290           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK  151 (763)
Q Consensus        72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~  151 (763)
                      ..|+..++.+......+  .....+.+++|.+.. +.++.+-...+.|.-.++.......      ............+.
T Consensus        10 ~~I~~~~l~~~~~~~~~--~~~~~~~~id~d~~~-~~lYw~D~~~~~I~~~~l~~~~~~~------~~~~~~~~~~~~p~   80 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVISRDIQAPD   80 (266)
T ss_dssp             SSEEEEETTSCCCEEEE--CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCC
T ss_pred             CeEEEEECCCCcceeee--CCCCceEEEEEEeCC-CEEEEEECCCCEEEEEEecCCCCCc------ceEEEEeCCCCCcc
Confidence            36888899876554444  345567899999873 3344443456667766665321100      11122233345677


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEE
Q 004290          152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL  231 (763)
Q Consensus       152 ~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l  231 (763)
                      .|++.+.++++.++-...+.|.+.++.....            ..+..             ........++++|..+.++
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~------------~~~~~-------------~~~~~P~~l~vd~~~g~ly  135 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVVDPVHGFMY  135 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSE------------EEEEE-------------CTTCCEEEEEEETTTTEEE
T ss_pred             eEEEeeccceEEEEecCCCEEEeEecCCceE------------EEEEc-------------CCCCCcceEEEEcccCeEE
Confidence            8999886777777777788999999876531            11111             1123467899999755555


Q ss_pred             EEEe-CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECC
Q 004290          232 LVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVN  309 (763)
Q Consensus       232 ~sgs-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~  309 (763)
                      .+-. ..+.|.-.++.... ..             .+..     .+.  ...+++++.+.++.|+.+. ..+.|...++.
T Consensus       136 ~~~~~~~~~I~r~~~dGs~-~~-------------~l~~-----~~~--~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~d  194 (266)
T d1ijqa1         136 WTDWGTPAKIKKGGLNGVD-IY-------------SLVT-----ENI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (266)
T ss_dssp             EEECSSSCEEEEEETTSCC-EE-------------EEEC-----SSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EeccCCCcceeEeccCCCc-ee-------------cccc-----ccc--ceeeEEEeeccccEEEEecCCcCEEEEEECC
Confidence            5432 23445555554221 11             1100     011  1378899999888777764 47899999997


Q ss_pred             CCCc
Q 004290          310 HAGG  313 (763)
Q Consensus       310 ~~~~  313 (763)
                      ....
T Consensus       195 G~~~  198 (266)
T d1ijqa1         195 GGNR  198 (266)
T ss_dssp             SCSC
T ss_pred             CCCE
Confidence            7543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.12  E-value=0.2  Score=49.50  Aligned_cols=96  Identities=11%  Similarity=0.158  Sum_probs=62.3

Q ss_pred             cccchhhhhccccceeec-cccCceEEEEeCCCCCEEEEEeCC-CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCC
Q 004290           30 LQMHSSLVRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD  107 (763)
Q Consensus        30 ~~~~~~~~~~~~~~~~l~-gH~~~V~~l~fsp~g~~Lasgs~D-~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~  107 (763)
                      +.+|+....++.....+. .|.....+.++.++|++++.|+.+ ..+.+||..+......-.......-.+++..++  +
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~d--G  131 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD--G  131 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT--S
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecC--C
Confidence            456766666666554443 344445567888999999998765 589999998876543211111122245666777  7


Q ss_pred             cEEEEEeCC------CcEEEEECCCC
Q 004290          108 ELVVSGAGD------AEVRLFNLSRF  127 (763)
Q Consensus       108 ~~l~s~s~d------g~I~iwd~~~~  127 (763)
                      ++++.++.+      ..+.+||..+.
T Consensus       132 ~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         132 RVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ceeeeccccccccccceeeeecCCCC
Confidence            888888753      35899998864

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.88  E-value=1.5  Score=40.60  Aligned_cols=224  Identities=11%  Similarity=0.147  Sum_probs=125.5

Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  134 (763)
Q Consensus        55 ~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~  134 (763)
                      +.-.+|..+.||.=+ ..++.|+|+++.+.++.+  ....+|.--.|..+   +.|+-.. +..|+-|+++..       
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~--~~~e~VvfWkWis~---~~L~lVT-~taVYHW~~~g~-------  132 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH--TMTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGE-------  132 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE--ECSSCCCEEEESSS---SEEEEEC-SSEEEEEESSSS-------
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceE--EcCCCcEEEEecCC---CEEEEEc-CCceEEEcccCC-------
Confidence            344578888888766 458999999999999887  24557777788766   5666665 568999999632       


Q ss_pred             CCCCCceeeeccc----CceeEEEEecCCCCEEEEEe------CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290          135 NAITPSALYQCHT----RRVKKLAVEVGNPHVVWSAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (763)
Q Consensus       135 ~~~~~~~~~~~h~----~~v~~l~~sp~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (763)
                        ..|.+.+..|.    ..|..-..+++...++++|=      -.|.+.+|..+.....  ...+|..   .+..++.. 
T Consensus       133 --s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ--~ieGhaa---~F~~~~~~-  204 (327)
T d1utca2         133 --SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAA---SFAQFKME-  204 (327)
T ss_dssp             --CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE--EECCSEE---EEEEECCT-
T ss_pred             --CCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc--cccceee---eeEEEEcC-
Confidence              14566666554    35666666774433333331      2367778887665311  1111110   11110000 


Q ss_pred             eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC-CcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (763)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  283 (763)
                            ...+...+.|.+.-         +...+.++|.++..... -..+.     .+.+..+.|    +....+. --
T Consensus       205 ------g~~~~~~lf~fa~r---------~~~~~kLhIiEig~~~~g~~~f~-----kk~vdi~fp----pea~~DF-Pv  259 (327)
T d1utca2         205 ------GNAEESTLFCFAVR---------GQAGGKLHIIEVGTPPTGNQPFP-----KKAVDVFFP----PEAQNDF-PV  259 (327)
T ss_dssp             ------TCSSCEEEEEEEEE---------ETTEEEEEEEECSCCCTTCCCCC-----CEEEECCCC----TTCTTCC-EE
T ss_pred             ------CCCCCceEEEEEEC---------CCCCcEEEEEEcCCCccCCCCCc-----ceeEEEECC----ccccCCc-EE
Confidence                  01111122222221         12236788888865321 11110     011112211    1222232 45


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCe
Q 004290          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASK  325 (763)
Q Consensus       284 ~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  325 (763)
                      ++..|+.-..++.-+.-|.|++||+.++.......-.++.+-
T Consensus       260 amqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF  301 (327)
T d1utca2         260 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  301 (327)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             EEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceE
Confidence            688888888899999999999999999875444433344433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.77  E-value=1.6  Score=45.31  Aligned_cols=59  Identities=10%  Similarity=-0.091  Sum_probs=41.3

Q ss_pred             CCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCcccc
Q 004290          648 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVS  707 (763)
Q Consensus       648 Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~  707 (763)
                      .|.|.-+|+.||+.+=+..-- .+..+=..+-.+.+++.++.|+.++.+|.++++.+..+
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~  501 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEE
Confidence            478999999999988554321 11111111224667788999999999999999988755

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.43  E-value=0.14  Score=50.39  Aligned_cols=233  Identities=12%  Similarity=0.128  Sum_probs=117.9

Q ss_pred             EEEeCC---CCCEEEEEe-CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc------------
Q 004290           55 AISWNS---KGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE------------  118 (763)
Q Consensus        55 ~l~fsp---~g~~Lasgs-~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~------------  118 (763)
                      .++|..   ||++|+... .+.+|-+-|+.+.++...+.......+..++..++.+..+++.++.+..            
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            566654   788887665 6889999999999886655334556677777765443567777776332            


Q ss_pred             ------EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC---------------cEEEEEC
Q 004290          119 ------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---------------TLRQHDF  177 (763)
Q Consensus       119 ------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg---------------~i~iwd~  177 (763)
                            +.++|..+.+          ...... -.+....++++|++ .++++.+.+.               .+.++++
T Consensus       169 ~~y~~~~t~ID~~tm~----------V~~QV~-V~g~ld~~~~s~dG-K~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~  236 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWE----------VAWQVL-VSGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI  236 (459)
T ss_dssp             G-EEEEEEEEETTTTE----------EEEEEE-ESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEH
T ss_pred             hhcceEEEEEecCCce----------EEEEee-eCCChhccccCCCC-CEEEEEeccccCCcchhhcccccceEEEEech
Confidence                  4566666421          122221 23456678899955 5555554321               1223332


Q ss_pred             CCCCCCCCCCCCCcccceEEEecCCCce-eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCC
Q 004290          178 RQGSSCPPAGSSHQECRNILLDLRCGAK-RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (763)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~  256 (763)
                      ...+...............+.+...... ..+...+ -......+.++|++...+++|..+.++.|+|++....+.  ..
T Consensus       237 ~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~--~~  313 (459)
T d1fwxa2         237 AEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--YE  313 (459)
T ss_dssp             HHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--HS
T ss_pred             HHhHHhhhcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhh--cc
Confidence            2111000000000000111222211000 0000000 011234788999854445556678999999997543221  00


Q ss_pred             CCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (763)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~  310 (763)
                      ...+..++...     .   .-+..-..-+|...|.-..+---|..|.-|++..
T Consensus       314 ~~~~~~~~~~e-----~---elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         314 NADPRSAVVAE-----P---ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             CC-GGGGEEEC-----C---BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cCCccccEEee-----c---ccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            11111111110     0   0111244567888885333444699999999976

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.10  E-value=4  Score=42.24  Aligned_cols=53  Identities=8%  Similarity=-0.021  Sum_probs=37.0

Q ss_pred             cCCCCEEEEecCCCcEEEEEcCcCcEEEEEecC-CcceEEEEeeCCCC-eEEEEe
Q 004290          636 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGD-EAVVNCVQCHPFDC-VVATSG  688 (763)
Q Consensus       636 s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH-~~~V~~v~~sp~~~-~laS~s  688 (763)
                      +-.+.+|+.|+.||.++-+|.+||+.+-.+.-- ...-.-+.|..+++ |++...
T Consensus       472 ~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         472 YTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEe
Confidence            335778889999999999999999999777532 22222355666784 665443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.7  Score=36.42  Aligned_cols=108  Identities=19%  Similarity=0.145  Sum_probs=87.7

Q ss_pred             hhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCch
Q 004290          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR  442 (763)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~  442 (763)
                      +..+...++..+..|+ +..++..+..++...+..      ..++.+++..+...   ++...|+..+..++.++|....
T Consensus         3 ~~~l~~~g~~~~~~g~-~~eAi~~~~~al~~~p~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~   72 (117)
T d1elwa_           3 VNELKEKGNKALSVGN-IDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKK---GDYQKAYEDGCKTVDLKPDWGK   72 (117)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCcc------hhhhhccccccccc---ccccccchhhhhHHHhccchhh
Confidence            4556777777777777 778999999999866554      34667777777653   4566789999999999999999


Q ss_pred             hHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHH
Q 004290          443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK  480 (763)
Q Consensus       443 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~  480 (763)
                      +.+.+..++..+++..++...........|+...+...
T Consensus        73 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  110 (117)
T d1elwa_          73 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG  110 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999999999999999999997665433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.83  E-value=0.097  Score=49.05  Aligned_cols=68  Identities=15%  Similarity=0.170  Sum_probs=50.8

Q ss_pred             ccCC--CCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeC----CC--cEEEEcCCCCCCc
Q 004290          635 LGQR--GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGI----DN--TIKIWTPSASVPS  704 (763)
Q Consensus       635 ~s~d--~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~----D~--~IrvW~~~~~~~~  704 (763)
                      .|||  |++||=.+ ++.|++.|+++|+. +.|..+.+.+...+|||||+.||-.+.    +.  .|.+.+..+++..
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            6899  99888665 45699999999886 467778888999999999998875432    22  3666666666543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.68  E-value=6.4  Score=40.43  Aligned_cols=52  Identities=12%  Similarity=0.198  Sum_probs=36.8

Q ss_pred             cCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcc-eEEEEeeCCCC-eEEEE
Q 004290          636 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV-VNCVQCHPFDC-VVATS  687 (763)
Q Consensus       636 s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~-V~~v~~sp~~~-~laS~  687 (763)
                      +-.|.+|+.|+.||.++-+|.+||+.+-.+.-.... -.-+.|..+++ ||+..
T Consensus       466 ~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~  519 (560)
T d1kv9a2         466 STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIM  519 (560)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            446788999999999999999999999877643221 11245556774 55543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.50  E-value=5.6  Score=39.29  Aligned_cols=103  Identities=11%  Similarity=0.089  Sum_probs=60.6

Q ss_pred             ccCceEEEEeCCCCCEEEEE-e----CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC-------
Q 004290           49 HQGCVNAISWNSKGSLLISG-S----DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------  116 (763)
Q Consensus        49 H~~~V~~l~fsp~g~~Lasg-s----~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d-------  116 (763)
                      +.-.+..+++||++++||-+ +    .-..|++.|+.+++.+.....  ......+.|.++  +..|+....+       
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~D--~~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHD--GKGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTT--SSEEEEEECCCCSSCCS
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcCC--CCEEEEEEeccccCccc
Confidence            33345567889999998843 2    234699999999987653311  112256889999  5666554332       


Q ss_pred             ---------CcEEEEECCCCCCCCCCCCCCCCceeeeccc--CceeEEEEecCCCCEEE
Q 004290          117 ---------AEVRLFNLSRFSGRGLDDNAITPSALYQCHT--RRVKKLAVEVGNPHVVW  164 (763)
Q Consensus       117 ---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~sp~~~~~l~  164 (763)
                               ..|..|.+.+....        ....+....  ..+..+..++ ++.+++
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~~~~--------d~~v~~e~d~~~~~~~~~~s~-d~~~l~  248 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTDQSE--------DILCAEFPDEPKWMGGAELSD-DGRYVL  248 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGG--------CEEEECCTTCTTCEEEEEECT-TSCEEE
T ss_pred             ccccccCCcceEEEEECCCCccc--------cccccccccCCceEEeeeccC-Ccceee
Confidence                     25777777764321        123333322  3455666777 445543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.43  E-value=0.69  Score=45.36  Aligned_cols=117  Identities=17%  Similarity=0.089  Sum_probs=72.5

Q ss_pred             eEEEEeCCCCCEEEEEeCCC-----------cEEEEeCCCCeEE--EEEccCCCCceEEEEEeeCCCCcEEEEEeCC-Cc
Q 004290           53 VNAISWNSKGSLLISGSDDT-----------HINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAGD-AE  118 (763)
Q Consensus        53 V~~l~fsp~g~~Lasgs~D~-----------~v~iWd~~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d-g~  118 (763)
                      +.......+|++++.|+.+.           .+.+||..+++-.  ......|........+.++  +.+++.|+.+ ..
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~--g~i~v~Gg~~~~~   99 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN--GQIVVTGGNDAKK   99 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT--SCEEEECSSSTTC
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecC--CcEEEeecCCCcc
Confidence            34444556889888887531           2679999987532  2222344444456678888  7888888765 68


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC------CcEEEEECCCCC
Q 004290          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGS  181 (763)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d------g~i~iwd~~~~~  181 (763)
                      +.+||..+...        .....+... ..-..++..+ ++.+++.++.+      ..+.+||..+.+
T Consensus       100 ~~~yd~~~~~w--------~~~~~~~~~-r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         100 TSLYDSSSDSW--------IPGPDMQVA-RGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEEEGGGTEE--------EECCCCSSC-CSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eeEecCccCcc--------ccccccccc-ccccceeeec-CCceeeeccccccccccceeeeecCCCCc
Confidence            99999986432        112222211 1223455666 56788777643      368899988764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.58  E-value=6.3  Score=37.46  Aligned_cols=164  Identities=11%  Similarity=0.057  Sum_probs=84.6

Q ss_pred             ceEEEEeCCCCCEEEEEeC------------CCcEEEEeCCCCeEEE-EEc-cCC-----CCceEEEEEeeCCCCc-EEE
Q 004290           52 CVNAISWNSKGSLLISGSD------------DTHINVWSYSSRKLLH-SIE-TGH-----SANVFCTKFVPETSDE-LVV  111 (763)
Q Consensus        52 ~V~~l~fsp~g~~Lasgs~------------D~~v~iWd~~~~~~~~-~~~-~~h-----~~~V~~v~~~p~~~~~-~l~  111 (763)
                      ..-.|...|+|..+++++.            .|.|.++|+.+.+... .+. .+.     .-....+....+.++. +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            4557888899987766542            4889999987653211 110 111     1234555554432233 344


Q ss_pred             EEe---CCCcEEEEECCCCCCCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEe--C-C------------CcE
Q 004290          112 SGA---GDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSAS--E-D------------GTL  172 (763)
Q Consensus       112 s~s---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s--~-d------------g~i  172 (763)
                      +..   ...+|.+|++......      ...+.++. ......++|++.. ++.+++|-.  . +            ++.
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~------l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g  188 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKS------LLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWS  188 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTE------EEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCE
T ss_pred             EEeccCCCceeEEEEEeCCCCe------EEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCce
Confidence            443   3566888887653211      11122221 1224467777776 445555521  0 0            122


Q ss_pred             EEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC
Q 004290          173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (763)
Q Consensus       173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~  248 (763)
                      .+|....++                       ...+.   ......+.|+++|++..++++-+..+.|++|++...
T Consensus       189 ~v~~~~~~~-----------------------~~~~~---~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         189 FVTYYSPND-----------------------VRVVA---EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EEEEECSSC-----------------------EEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             eEEEEcCCc-----------------------eEEEc---CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            222222111                       11111   122456899999985555566677889999998753

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=90.26  E-value=2.9  Score=34.38  Aligned_cols=121  Identities=18%  Similarity=0.083  Sum_probs=88.5

Q ss_pred             hHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccc----------hhhhhHHHHHhhccccccchhhhHHhHHHH
Q 004290          364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR----------HECLCIRAALLLKRKWKNDAQMAIRDCYNA  433 (763)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~  433 (763)
                      ..+...++..+..+. +..|+..|..++............          ..++.+++..+++.+   +...|+.++..+
T Consensus        18 ~~~~~~G~~~f~~~~-y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~---~~~~Al~~~~~a   93 (153)
T d2fbna1          18 FDIKEEGNEFFKKNE-INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK---DYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhc---ccchhhhhhhcc
Confidence            345556666666665 778999999988755443222111          125567777777654   345688899999


Q ss_pred             hcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHHH
Q 004290          434 RRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI  488 (763)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  488 (763)
                      +.++|...++.+.+..++..+++..++...........|...............+
T Consensus        94 l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998776654444443333

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.32  E-value=14  Score=38.13  Aligned_cols=49  Identities=20%  Similarity=0.151  Sum_probs=36.3

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEec----CCcceEEEEeeCCCC-eEEE
Q 004290          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLG----DEAVVNCVQCHPFDC-VVAT  686 (763)
Q Consensus       635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~g----H~~~V~~v~~sp~~~-~laS  686 (763)
                      ++..|.+|+.|+.||.++-+|.+||+.+-.+.-    +..+++   |..+++ |+|.
T Consensus       480 lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~t---Y~~dGkQYvav  533 (596)
T d1w6sa_         480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMT---YTHKGTQYVAI  533 (596)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE---EEETTEEEEEE
T ss_pred             eEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeE---EEECCEEEEEE
Confidence            345678999999999999999999999977753    334444   455774 5543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.34  E-value=4.1  Score=39.67  Aligned_cols=170  Identities=9%  Similarity=0.028  Sum_probs=97.9

Q ss_pred             cCceEEEEeCC--CCCEEEEEeCCC------------------cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcE
Q 004290           50 QGCVNAISWNS--KGSLLISGSDDT------------------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDEL  109 (763)
Q Consensus        50 ~~~V~~l~fsp--~g~~Lasgs~D~------------------~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~  109 (763)
                      ...+..++..+  +-.+++.++.+.                  .+.++|.++++....+..  .+....+.++|+  |++
T Consensus       131 ~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V--~g~ld~~~~s~d--GK~  206 (459)
T d1fwxa2         131 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV--SGNLDNCDADYE--GKW  206 (459)
T ss_dssp             CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE--SSCCCCEEECSS--SSE
T ss_pred             CCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeee--CCChhccccCCC--CCE
Confidence            34566666654  456777776632                  266789999888776632  345678999999  688


Q ss_pred             EEEEeCCCc---------------EEEEE-----------------------CCCCCCCCCCCCCCCCceeeecccCcee
Q 004290          110 VVSGAGDAE---------------VRLFN-----------------------LSRFSGRGLDDNAITPSALYQCHTRRVK  151 (763)
Q Consensus       110 l~s~s~dg~---------------I~iwd-----------------------~~~~~~~~~~~~~~~~~~~~~~h~~~v~  151 (763)
                      +++.+.+..               +.+++                       .+...+       ...+..+. -.....
T Consensus       207 af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~-------~~v~~yIP-VpKsPH  278 (459)
T d1fwxa2         207 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS-------SLFTRYIP-IANNPH  278 (459)
T ss_dssp             EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG---------CSSEEEEE-EESSCC
T ss_pred             EEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCC-------cceeEEEe-cCCCCC
Confidence            777764321               33333                       322110       01122222 234567


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEE
Q 004290          152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL  231 (763)
Q Consensus       152 ~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l  231 (763)
                      .+.++|++..+++++..+.++.++|+++-.....   ......           ..+...+.........+|+.. |+-.
T Consensus       279 GV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~---~~~~~~-----------~~~~~e~elglgPLht~fd~~-g~ay  343 (459)
T d1fwxa2         279 GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY---ENADPR-----------SAVVAEPELGLGPLHTAFDGR-GNAY  343 (459)
T ss_dssp             CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH---SCC-GG-----------GGEEECCBCCSCEEEEEECTT-SEEE
T ss_pred             ceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhc---ccCCcc-----------ccEEeecccCcCccccccCCC-ceEE
Confidence            8899996655566666799999999975321100   000000           001111112233456788885 6666


Q ss_pred             EEEeCCCcEEEEeCC
Q 004290          232 LVGGSDAFARLYDRR  246 (763)
Q Consensus       232 ~sgs~Dg~i~iwd~~  246 (763)
                      .+---|..|.-|++.
T Consensus       344 tslfids~v~kw~~~  358 (459)
T d1fwxa2         344 TSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEETTTTEEEEEEHH
T ss_pred             EEeeccceEEEEecc
Confidence            666789999999985

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=86.76  E-value=5.9  Score=32.97  Aligned_cols=121  Identities=15%  Similarity=0.085  Sum_probs=88.9

Q ss_pred             hhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccc---------hhhhhHHHHHhhccccccchhhhHHhHHHH
Q 004290          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR---------HECLCIRAALLLKRKWKNDAQMAIRDCYNA  433 (763)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~  433 (763)
                      ...+.+.++..+..|. +..|+..|..++...+........         ..++.+++..+.+   -++...|+.++..+
T Consensus        15 a~~~~e~G~~~~~~~~-~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~---l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGK-YVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK---LREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHH---hhhcccchhhhhhh
Confidence            3455666666666666 778999999888765544333222         1245566666665   33556788899999


Q ss_pred             hcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHH
Q 004290          434 RRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKH  487 (763)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  487 (763)
                      +.++|.+..+.+....++..++++..+...........|+..........+...
T Consensus        91 l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999887665444444333

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=85.46  E-value=15  Score=34.62  Aligned_cols=218  Identities=11%  Similarity=0.116  Sum_probs=112.2

Q ss_pred             EEEeCC---CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee----CCCCcEEEEEe-CC---CcEEEEE
Q 004290           55 AISWNS---KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP----ETSDELVVSGA-GD---AEVRLFN  123 (763)
Q Consensus        55 ~l~fsp---~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p----~~~~~~l~s~s-~d---g~I~iwd  123 (763)
                      ++-++|   +..+++.....+-|.+||+. |+.+..+.   .+.++.|..-.    ......|+.++ .+   .+|.+|.
T Consensus        30 AIW~n~~~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~  105 (353)
T d1h6la_          30 AIWLDPKNPQNSKLITTNKKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA  105 (353)
T ss_dssp             EEECCSSCGGGCEEEEEETTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEE
T ss_pred             eEEcCCCCcCccEEEEEcCcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEE
Confidence            344455   44566666676679999985 77777663   34566555442    21122344444 22   3588888


Q ss_pred             CCCCCCCCCCCCCCCCceeeecccCceeEEEE--ecCCCC-EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAV--EVGNPH-VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (763)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--sp~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  200 (763)
                      +..........  ..+......-...++.+++  +|.++. +++....+|.+.+|.+......      .. ....+..+
T Consensus       106 id~~~~~l~~~--~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g------~v-~~~lvr~f  176 (353)
T d1h6la_         106 IDGKNGTLQSI--TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNG------YI-SGKKVRAF  176 (353)
T ss_dssp             EETTTTEEEEC--SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS------SE-EEEEEEEE
T ss_pred             ecCcccccccc--cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCC------ce-eeEeeecc
Confidence            76422110000  0000011111234777777  565554 4566677899999987543210      00 00011111


Q ss_pred             CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (763)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (763)
                      .            ....+-.|.+++. ...|+.+-.+.-|+.+++.-.....        ...+......++      ..
T Consensus       177 ~------------~~~q~EGCVvDde-~~~LyisEE~~Giw~~~a~~~~~~~--------~~~i~~~~g~~l------~~  229 (353)
T d1h6la_         177 K------------MNSQTEGMAADDE-YGSLYIAEEDEAIWKFSAEPDGGSN--------GTVIDRADGRHL------TP  229 (353)
T ss_dssp             E------------CSSCEEEEEEETT-TTEEEEEETTTEEEEEESSTTSCSC--------CEEEEECSSSSC------CS
T ss_pred             C------------CCCccceEEEeCC-CCcEEEecCccceEEEEeccCCCcc--------ceeeecccCccc------cC
Confidence            0            1235778999997 4688888888777666654211100        000000001111      12


Q ss_pred             ceeEEEEcC--CCC-EEEEEeC-CCeEEEEECCCCC
Q 004290          281 HLTHVTFSP--NGE-EVLLSYS-GEHVYLMDVNHAG  312 (763)
Q Consensus       281 ~i~~v~~sp--dg~-~l~~~s~-d~~i~iwd~~~~~  312 (763)
                      .+..|+.-.  ++. ||++++. +++..+||.....
T Consensus       230 D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~  265 (353)
T d1h6la_         230 DIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQN  265 (353)
T ss_dssp             CEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             CccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCc
Confidence            467776543  333 6666655 8999999998753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.44  E-value=11  Score=30.62  Aligned_cols=108  Identities=15%  Similarity=0.087  Sum_probs=86.4

Q ss_pred             hhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCC
Q 004290          361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS  440 (763)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~  440 (763)
                      +....+...++..+..+. +..|+..+..++...+..      ...+.+++..++..+   +...|...+..++.++|.+
T Consensus         8 ~~a~~l~~~gn~~~~~~~-y~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~---~~~~A~~~~~kal~~~p~~   77 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKD-YENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTE---CYGYALGDATRAIELDKKY   77 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHcCC-HHHHHHHhhhccccchhh------hhhhhhhHHHHHhcc---ccchHHHHHHHHHHHcccc
Confidence            455667777777777776 778999999999876543      345667776666543   4556888899999999999


Q ss_pred             chhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhH
Q 004290          441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA  478 (763)
Q Consensus       441 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~  478 (763)
                      ..+...+..++..+++..++...........|.....-
T Consensus        78 ~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~  115 (159)
T d1a17a_          78 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK  115 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            99999999999999999999999999999888876643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.34  E-value=3.6  Score=35.24  Aligned_cols=101  Identities=20%  Similarity=0.211  Sum_probs=80.0

Q ss_pred             hhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCc
Q 004290          362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF  441 (763)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~  441 (763)
                      +...+...++..+..|. +..|+..+..++...+..      ..++.+++..+...+   +.-.|+..+..++.++|...
T Consensus         3 ~a~~l~~~Gn~~~~~g~-~~~Ai~~~~kal~~~p~~------~~~~~~lg~~y~~~~---~~~~Ai~~~~~al~l~p~~~   72 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRK-YPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQ---QPEQALADCRRALELDGQSV   72 (201)
T ss_dssp             CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSCTTCH
T ss_pred             hHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHhHHHHHhhhh---hhhhhhHHHHHHHHhCCCcH
Confidence            45667788888777776 889999999999876543      457778888877644   34577888999999999999


Q ss_pred             hhHHHHHHHHHHhCchHHHHHHHHHHhccCC
Q 004290          442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDP  472 (763)
Q Consensus       442 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p  472 (763)
                      .++..+..++..+++..++...........|
T Consensus        73 ~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999877765554433