Citrus Sinensis ID: 004303
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 762 | 2.2.26 [Sep-21-2011] | |||||||
| Q4PE39 | 773 | Protein transport protein | N/A | no | 0.913 | 0.900 | 0.476 | 0.0 | |
| A4R1J7 | 770 | Protein transport protein | N/A | no | 0.927 | 0.918 | 0.485 | 0.0 | |
| P0CR38 | 763 | Protein transport protein | yes | no | 0.919 | 0.918 | 0.486 | 0.0 | |
| P0CR39 | 763 | Protein transport protein | N/A | no | 0.919 | 0.918 | 0.486 | 0.0 | |
| Q0US25 | 776 | Protein transport protein | N/A | no | 0.929 | 0.912 | 0.479 | 0.0 | |
| Q9C284 | 775 | Protein transport protein | N/A | no | 0.931 | 0.916 | 0.474 | 0.0 | |
| Q2HB00 | 773 | Protein transport protein | N/A | no | 0.929 | 0.915 | 0.477 | 0.0 | |
| Q1DY01 | 772 | Protein transport protein | N/A | no | 0.929 | 0.917 | 0.480 | 0.0 | |
| Q2URM9 | 769 | Protein transport protein | yes | no | 0.918 | 0.910 | 0.477 | 0.0 | |
| A2Q8L1 | 768 | Protein transport protein | yes | no | 0.917 | 0.910 | 0.476 | 0.0 |
| >sp|Q4PE39|SEC23_USTMA Protein transport protein SEC23 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC23 PE=3 SV=1 | Back alignment and function desciption |
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Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/737 (47%), Positives = 485/737 (65%), Gaps = 41/737 (5%)
Query: 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT-C 64
D+E +DGVR+ WNV P +K EA+ VVP+SA+YTP+K +P + Y P+ C+ C
Sbjct: 5 DVEDRDGVRLSWNVWPSSKIEATRTVVPISALYTPLK----EREDLPPVLYEPVTCKPPC 60
Query: 65 RSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGE 124
R++LNP+ +D K+WICPFC RN FPPHY I+ NLPAEL P+YTTIEY P +
Sbjct: 61 RAVLNPYCQIDVRGKLWICPFCLSRNAFPPHYKDISSTNLPAELLPKYTTIEYTLSRPAQ 120
Query: 125 KSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQ 184
+PP+F++VVDTC+ ++++ L+ AL ++ LLP N+LVGLIT+GT+ QVHELG
Sbjct: 121 ---IPPIFLYVVDTCMDDDDLKALREALVVSLSLLPPNALVGLITYGTMAQVHELGY--D 175
Query: 185 IIPKTYVFKGSKDVSKDQLLEQLNF-----------------FIKKPKPSTGVIAGVRDG 227
PK+YVF+G+K+ + + + L + P+P A + G
Sbjct: 176 ACPKSYVFRGTKEYAPKAIQDMLGLNPGARPMGAGAPGAPGGPSQAPRPPN---ATAQMG 232
Query: 228 LSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVP 287
S RFL+P CEF L +LE+LQKDPWPV D+RS RCTG ALS+A +L P
Sbjct: 233 AS-----RFLLPVSQCEFQLTQILEQLQKDPWPVANDKRSQRCTGVALSVAVGMLETTFP 287
Query: 288 GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVH 347
+GAR++ F GGP+TEGP +VS L E IRSH D+DKD+A +Y +A+KFY+A++K+
Sbjct: 288 NTGARVMLFCGGPATEGPGMVVSTELRERIRSHHDIDKDNAKYYKRAIKFYEAMAKRAAG 347
Query: 348 QGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYD-LGL 406
GH +D+FA LDQVG+ E+K T G ++L+DSF +FK S R+F D L +
Sbjct: 348 NGHTIDVFAGCLDQVGLLEMKGLANLTNGHMILADSFQMGIFKQSFHRLFQKDDQGHLQM 407
Query: 407 SSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLV 466
N ++ C+K++KV G+IG S KK + +G G TSAWK+C L TS +
Sbjct: 408 GFNATLDVQCTKELKVSGLIGHAVSANKKSGCVGETEIGIGQTSAWKLCSLTPRTSAGIY 467
Query: 467 FEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGF 526
FE+V P ++ QF+T+YQH GQ RLRVTT++R + G GS Q + A F
Sbjct: 468 FEVV---TPAGQPMQPGSRGLIQFVTHYQHASGQYRLRVTTIARNFAEG-GSGQ-IAASF 522
Query: 527 DQEAAAVVMARLVSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDSPSSFSLSPRFSIF 586
DQEAAAV+MAR+ FK EI+ D +RWLD+ LI +C +F DY+KD P+SF L FSI+
Sbjct: 523 DQEAAAVLMARIAVFKAEIDDSPDVLRWLDRMLIRLCQKFADYRKDDPTSFRLGENFSIY 582
Query: 587 PQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMIQPSLISYSFHSGPEPALL 646
PQFMFHLRRSQF+QVFNNSPDETA++R +LN E+V NS++MIQP+L+SY F P+P LL
Sbjct: 583 PQFMFHLRRSQFLQVFNNSPDETAFYRHVLNTEDVNNSLIMIQPTLMSYGFEGPPQPVLL 642
Query: 647 DVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVIMK 706
D +I D +LLLD++F ++IFHG T+AQWRKAGY +Q ++ F ++L+ P DA ++
Sbjct: 643 DSVSIRPDVVLLLDTFFHILIFHGETVAQWRKAGYQDQEGYENFKEVLENPRADAQDLLA 702
Query: 707 ERFPVPRLVICDQHGSQ 723
+RFP+PR ++CDQ+GSQ
Sbjct: 703 DRFPIPRYIVCDQNGSQ 719
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Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631) |
| >sp|A4R1J7|SEC23_MAGO7 Protein transport protein SEC23 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|P0CR38|SEC23_CRYNJ Protein transport protein SEC23 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|P0CR39|SEC23_CRYNB Protein transport protein SEC23 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q0US25|SEC23_PHANO Protein transport protein SEC23 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SEC23 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9C284|SEC23_NEUCR Protein transport protein sec-23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sec-23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2HB00|SEC23_CHAGB Protein transport protein SEC23 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q1DY01|SEC23_COCIM Protein transport protein SEC23 OS=Coccidioides immitis (strain RS) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2URM9|SEC23_ASPOR Protein transport protein sec23 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sec23 PE=3 SV=1 | Back alignment and function description |
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| >sp|A2Q8L1|SEC23_ASPNC Protein transport protein sec23 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec23 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 762 | ||||||
| 449498965 | 761 | PREDICTED: protein transport protein SEC | 0.938 | 0.939 | 0.868 | 0.0 | |
| 255571157 | 761 | protein transport protein sec23, putativ | 0.938 | 0.939 | 0.871 | 0.0 | |
| 449470750 | 761 | PREDICTED: protein transport protein SEC | 0.938 | 0.939 | 0.868 | 0.0 | |
| 449454554 | 769 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.938 | 0.929 | 0.859 | 0.0 | |
| 356558936 | 765 | PREDICTED: protein transport protein SEC | 0.940 | 0.937 | 0.828 | 0.0 | |
| 357513131 | 763 | Protein transport protein SEC23 [Medicag | 0.934 | 0.933 | 0.828 | 0.0 | |
| 356504446 | 767 | PREDICTED: protein transport protein SEC | 0.940 | 0.934 | 0.823 | 0.0 | |
| 225464297 | 761 | PREDICTED: protein transport protein SEC | 0.938 | 0.939 | 0.825 | 0.0 | |
| 224129388 | 773 | predicted protein [Populus trichocarpa] | 0.940 | 0.927 | 0.848 | 0.0 | |
| 297744803 | 800 | unnamed protein product [Vitis vinifera] | 0.938 | 0.893 | 0.783 | 0.0 |
| >gi|449498965|ref|XP_004160683.1| PREDICTED: protein transport protein SEC23-like [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 1314 bits (3400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 628/723 (86%), Positives = 679/723 (93%), Gaps = 8/723 (1%)
Query: 1 MTEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLR 60
M EF+DLEAQDGVRMPWNV+PGTKQEASNC+VPVSA+YTPIKAFP +MP+LPY+PLR
Sbjct: 1 MAEFLDLEAQDGVRMPWNVVPGTKQEASNCIVPVSALYTPIKAFP----NMPVLPYSPLR 56
Query: 61 CRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPP 120
CRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASI+DDNLPAELFPQYTTIEYE
Sbjct: 57 CRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDDNLPAELFPQYTTIEYEST 116
Query: 121 GPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELG 180
G S VPPVFMFV+DTCIIEEE++FLKSALSQA+DLLPDNSLVGL+T+GT V VHELG
Sbjct: 117 GE-TPSPVPPVFMFVLDTCIIEEEITFLKSALSQAVDLLPDNSLVGLVTYGTFVHVHELG 175
Query: 181 GFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPA 240
FGQI PKT+VFKG+KDVSKDQLLEQ+NFF+KKPKP TGVIAG RDGLS+++IARFL+P
Sbjct: 176 -FGQI-PKTFVFKGTKDVSKDQLLEQMNFFLKKPKPPTGVIAGARDGLSTESIARFLLPK 233
Query: 241 FDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGP 300
+CEF LNSVLEELQKDPW VP DQR+ RCTGTALSIAASLLGACVPGSGARILAFVGGP
Sbjct: 234 SECEFALNSVLEELQKDPWGVPADQRAPRCTGTALSIAASLLGACVPGSGARILAFVGGP 293
Query: 301 STEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360
ST+GP AIVSKNLSEPIRSHKDLDKDSAPH+HKAVKFY+ LSKQLVHQGHVLDLFACALD
Sbjct: 294 STDGPGAIVSKNLSEPIRSHKDLDKDSAPHFHKAVKFYEGLSKQLVHQGHVLDLFACALD 353
Query: 361 QVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSNGIFEINCSKDI 420
QVG+AELKVAVEKTGGLVVL++SFGH+VFKDS++RVF SG+YDLGLSSNGIFEINCSKDI
Sbjct: 354 QVGIAELKVAVEKTGGLVVLAESFGHSVFKDSLKRVF-SGEYDLGLSSNGIFEINCSKDI 412
Query: 421 KVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEIPDATLQ 480
KVQG+IGPCASLEKKGPLCSD V+GQGNTSAWKMCGLDKAT+L L+FE+VKK+ DA +Q
Sbjct: 413 KVQGVIGPCASLEKKGPLCSDTVIGQGNTSAWKMCGLDKATTLSLIFEVVKKDNSDAAVQ 472
Query: 481 STNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVS 540
S +NQFYFQFLTYYQ+N GQMRLRVTTLSRRWVAG GSVQDLIAGFDQEAAA +MARLVS
Sbjct: 473 SASNQFYFQFLTYYQNNNGQMRLRVTTLSRRWVAGTGSVQDLIAGFDQEAAAAIMARLVS 532
Query: 541 FKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDSPSSFSLSPRFSIFPQFMFHLRRSQFVQ 600
FKME EAEFDPIRWLDK+LIH+CSRFGDYQKD+PSSFSLSPRFSIFPQF+FHLRRSQFVQ
Sbjct: 533 FKMENEAEFDPIRWLDKSLIHLCSRFGDYQKDTPSSFSLSPRFSIFPQFIFHLRRSQFVQ 592
Query: 601 VFNNSPDETAYFRMILNRENVTNSVVMIQPSLISYSFHSGPEPALLDVAAIAADRILLLD 660
VFNNSPDETAYFRMILNRENV NSVVMIQPSLISY+FHS PEP LLDVAAIAADRILLLD
Sbjct: 593 VFNNSPDETAYFRMILNRENVANSVVMIQPSLISYTFHSAPEPVLLDVAAIAADRILLLD 652
Query: 661 SYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVIMKERFPVPRLVICDQH 720
+YFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAP DDA +KERFPVPRLVICDQH
Sbjct: 653 AYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPRDDADATIKERFPVPRLVICDQH 712
Query: 721 GSQ 723
GSQ
Sbjct: 713 GSQ 715
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571157|ref|XP_002526529.1| protein transport protein sec23, putative [Ricinus communis] gi|223534204|gb|EEF35920.1| protein transport protein sec23, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449470750|ref|XP_004153079.1| PREDICTED: protein transport protein SEC23-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449454554|ref|XP_004145019.1| PREDICTED: LOW QUALITY PROTEIN: protein transport protein SEC23-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356558936|ref|XP_003547758.1| PREDICTED: protein transport protein SEC23-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357513131|ref|XP_003626854.1| Protein transport protein SEC23 [Medicago truncatula] gi|355520876|gb|AET01330.1| Protein transport protein SEC23 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356504446|ref|XP_003521007.1| PREDICTED: protein transport protein SEC23-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|225464297|ref|XP_002265101.1| PREDICTED: protein transport protein SEC23-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224129388|ref|XP_002320574.1| predicted protein [Populus trichocarpa] gi|222861347|gb|EEE98889.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297744803|emb|CBI38071.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 762 | ||||||
| TAIR|locus:2049324 | 761 | AT2G21630 "AT2G21630" [Arabido | 0.939 | 0.940 | 0.693 | 7.4e-272 | |
| TAIR|locus:2129460 | 773 | AT4G14160 "AT4G14160" [Arabido | 0.934 | 0.921 | 0.596 | 1.4e-238 | |
| TAIR|locus:2201051 | 783 | AT1G05520 "AT1G05520" [Arabido | 0.933 | 0.908 | 0.586 | 4.2e-230 | |
| UNIPROTKB|A4R1J7 | 770 | SEC23 "Protein transport prote | 0.926 | 0.916 | 0.464 | 6.5e-177 | |
| DICTYBASE|DDB_G0281985 | 750 | sec23 "putative transport prot | 0.751 | 0.764 | 0.432 | 9.6e-174 | |
| ASPGD|ASPL0000061491 | 771 | sec23 [Emericella nidulans (ta | 0.929 | 0.918 | 0.466 | 2.6e-173 | |
| UNIPROTKB|Q15436 | 765 | SEC23A "Protein transport prot | 0.918 | 0.915 | 0.452 | 5.8e-169 | |
| FB|FBgn0262125 | 773 | Sec23 "Sec23 ortholog (S. cere | 0.930 | 0.917 | 0.448 | 1.2e-168 | |
| MGI|MGI:1349635 | 765 | Sec23a "SEC23A (S. cerevisiae) | 0.918 | 0.915 | 0.452 | 2e-168 | |
| RGD|1309103 | 765 | Sec23a "Sec23 homolog A (S. ce | 0.918 | 0.915 | 0.452 | 2e-168 |
| TAIR|locus:2049324 AT2G21630 "AT2G21630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2614 (925.2 bits), Expect = 7.4e-272, P = 7.4e-272
Identities = 503/725 (69%), Positives = 585/725 (80%)
Query: 1 MTEFMDLEAQDGVRMPWNVIP-GTKQEAS-NCVVPVSAIYTPIKAFPVNNNSMPILPYAP 58
M EF +LEAQDGVRMPWN+IP TK+E S + VPVSAIYTP+K P+ + S+ +LPY+P
Sbjct: 1 MAEFGELEAQDGVRMPWNIIPVATKKEQSIDSEVPVSAIYTPLK--PLRSQSL-LLPYSP 57
Query: 59 LRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYE 118
LRCRTCRS+LNP+S+VDF+A W CPFCF RN FP +Y+S+ D+NLP ELFP TT+EY
Sbjct: 58 LRCRTCRSVLNPYSVVDFSACNWGCPFCFNRNPFPLNYSSVADNNLPPELFPHSTTVEYL 117
Query: 119 PPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHE 178
S PPVF+FVVDTC+I EE+ FLKS+L QA+DLLPD S++GLITF +LV+V+E
Sbjct: 118 CDSFSSPS--PPVFLFVVDTCLISEELDFLKSSLFQALDLLPDTSILGLITFDSLVRVYE 175
Query: 179 LGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLV 238
LG F K+Y F G+KD +KDQLL+QL+FF+K PKPS+GVIAG RDGLSSD IARFL+
Sbjct: 176 LG-FPHCT-KSYFFHGNKDCTKDQLLDQLSFFVKNPKPSSGVIAGARDGLSSDDIARFLL 233
Query: 239 PAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVG 298
PA DC FTL+SVLEEL PWPV D R RCTG AL IAASLLGAC PGS ARI+AF+G
Sbjct: 234 PASDCHFTLHSVLEELGNSPWPVAADHRPARCTGVALRIAASLLGACFPGSAARIMAFIG 293
Query: 299 GPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358
GPST+GP AIVS+ LS+PIRSHKD+DKDSA +YHKAV+FY+ L+KQLVHQGHVLD+FA +
Sbjct: 294 GPSTQGPGAIVSRELSDPIRSHKDIDKDSAMYYHKAVEFYEMLAKQLVHQGHVLDVFASS 353
Query: 359 LDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSNGIFEINCSK 418
+DQVG+AELKVAVE+TGG VVL++SFGH+VF+DS++RV SG+ DLGLSS GIFEINCSK
Sbjct: 354 VDQVGIAELKVAVEQTGGFVVLAESFGHSVFRDSLKRVCQSGENDLGLSSCGIFEINCSK 413
Query: 419 DIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEIPDAT 478
DIKVQGIIGPCASLEKKGPLCSD +GQG+TSAWKMCGLD TS+CLVFEI K + D
Sbjct: 414 DIKVQGIIGPCASLEKKGPLCSDTAIGQGHTSAWKMCGLDNNTSICLVFEIAKIDTADVV 473
Query: 479 LQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARL 538
LQS +NQFYFQFLTYYQH+ GQ RLRVTTLSRRWV G S+Q+L GFDQEAAAVVMARL
Sbjct: 474 LQSQSNQFYFQFLTYYQHSNGQTRLRVTTLSRRWVMGTESLQELSNGFDQEAAAVVMARL 533
Query: 539 VSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDXXXXXXXXXXXXXXXQFMFHLRRSQF 598
+S KME + EF+P RW+DKALI++C+ FGDYQK QF+FHLRRSQF
Sbjct: 534 ISSKMETQPEFNPQRWVDKALINLCTWFGDYQKGNPSSFSLSSQLSIFPQFVFHLRRSQF 593
Query: 599 VQVFNNSPDETAYFRMILNRENVTNSVVMIQPSLISYSFHSGPEPXXXXXXXXXXXXXXX 658
VQVFNNSPDETAYFRMIL RENV+NSVVMIQPSLIS+SFHS PEP
Sbjct: 594 VQVFNNSPDETAYFRMILYRENVSNSVVMIQPSLISFSFHSPPEPILLDVASIAADRILL 653
Query: 659 XXSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVIMKERFPVPRLVICD 718
SYFT+VIFHG+TIAQWRKAGYHNQPEHQAF LLQ+P D A IM ERFP PRLVICD
Sbjct: 654 LDSYFTLVIFHGSTIAQWRKAGYHNQPEHQAFGHLLQSPRDYADTIMSERFPTPRLVICD 713
Query: 719 QHGSQ 723
Q+GSQ
Sbjct: 714 QYGSQ 718
|
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| TAIR|locus:2129460 AT4G14160 "AT4G14160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2201051 AT1G05520 "AT1G05520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A4R1J7 SEC23 "Protein transport protein SEC23" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0281985 sec23 "putative transport protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000061491 sec23 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q15436 SEC23A "Protein transport protein Sec23A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| FB|FBgn0262125 Sec23 "Sec23 ortholog (S. cerevisiae)" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| MGI|MGI:1349635 Sec23a "SEC23A (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1309103 Sec23a "Sec23 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7SZE5 | SC23A_DANRE | No assigned EC number | 0.4683 | 0.9120 | 0.9084 | yes | no |
| Q5R9P3 | SC23A_PONAB | No assigned EC number | 0.4722 | 0.9186 | 0.9150 | yes | no |
| Q2URM9 | SEC23_ASPOR | No assigned EC number | 0.4774 | 0.9186 | 0.9102 | yes | no |
| A3GFA2 | SEC23_PICST | No assigned EC number | 0.4380 | 0.9068 | 0.9225 | yes | no |
| Q6FSI6 | SC232_CANGA | No assigned EC number | 0.4214 | 0.9212 | 0.9273 | yes | no |
| Q05AS9 | SC23A_XENTR | No assigned EC number | 0.4612 | 0.9238 | 0.9202 | yes | no |
| Q54T59 | SEC23_DICDI | No assigned EC number | 0.4546 | 0.9068 | 0.9213 | yes | no |
| Q4WK80 | SEC23_ASPFU | No assigned EC number | 0.4848 | 0.9278 | 0.9064 | yes | no |
| Q15436 | SC23A_HUMAN | No assigned EC number | 0.4722 | 0.9186 | 0.9150 | yes | no |
| Q6CPH3 | SEC23_KLULA | No assigned EC number | 0.4087 | 0.9212 | 0.9236 | yes | no |
| Q6C5L5 | SEC23_YARLI | No assigned EC number | 0.4663 | 0.9186 | 0.9234 | yes | no |
| Q6BQT6 | SEC23_DEBHA | No assigned EC number | 0.4416 | 0.9304 | 0.9504 | yes | no |
| A2Q8L1 | SEC23_ASPNC | No assigned EC number | 0.4760 | 0.9173 | 0.9101 | yes | no |
| P0CR38 | SEC23_CRYNJ | No assigned EC number | 0.4862 | 0.9199 | 0.9187 | yes | no |
| Q5BGR9 | SEC23_EMENI | No assigned EC number | 0.4809 | 0.9173 | 0.9066 | yes | no |
| Q01405 | SC23A_MOUSE | No assigned EC number | 0.4715 | 0.9173 | 0.9137 | yes | no |
| P15303 | SEC23_YEAST | No assigned EC number | 0.4157 | 0.9251 | 0.9179 | yes | no |
| O74873 | SC231_SCHPO | No assigned EC number | 0.4523 | 0.9409 | 0.9446 | yes | no |
| Q758M7 | SEC23_ASHGO | No assigned EC number | 0.4096 | 0.9212 | 0.9285 | yes | no |
| Q8SQX2 | SEC23_ENCCU | No assigned EC number | 0.3113 | 0.8740 | 0.9420 | yes | no |
| A2VDL8 | SC23A_BOVIN | No assigned EC number | 0.4715 | 0.9173 | 0.9101 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
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|||
 | estExt_fgenesh4_pg.C_LG_XIV1163 | protein transport protein sec23 (773 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | estExt_fgenesh4_pg.C_LG_XV0440 | • | 0.831 | ||||||||
 | estExt_fgenesh4_pg.C_LG_X0913 | • | 0.831 | ||||||||
 | estExt_fgenesh4_pg.C_LG_IX1026 | • | 0.811 | ||||||||
 | gw1.I.1579.1 | • | 0.811 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 762 | |||
| PLN00162 | 761 | PLN00162, PLN00162, transport protein sec23; Provi | 0.0 | |
| COG5047 | 755 | COG5047, SEC23, Vesicle coat complex COPII, subuni | 0.0 | |
| cd01478 | 267 | cd01478, Sec23-like, Sec23-like: Protein and membr | 1e-143 | |
| pfam04811 | 241 | pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | 1e-70 | |
| cd01468 | 239 | cd01468, trunk_domain, trunk domain | 7e-68 | |
| cd11287 | 121 | cd11287, Sec23_C, C-terminal Actin depolymerizatio | 6e-56 | |
| pfam04815 | 103 | pfam04815, Sec23_helical, Sec23/Sec24 helical doma | 1e-34 | |
| pfam08033 | 86 | pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom | 2e-23 | |
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 4e-21 | |
| pfam04810 | 39 | pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | 3e-19 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 2e-10 |
| >gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional | Back alignment and domain information |
|---|
Score = 1443 bits (3737), Expect = 0.0
Identities = 525/745 (70%), Positives = 613/745 (82%), Gaps = 20/745 (2%)
Query: 3 EFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCR 62
+F +LEA DGVRM WNV P +K EAS CV+P++A+YTP+K P +P+LPY PLRCR
Sbjct: 2 DFAELEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLP----ELPVLPYDPLRCR 57
Query: 63 TCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGP 122
TCR++LNP+ VDF AKIWICPFCFQRNHFPPHY+SI++ NLPAELFPQYTT+EY P
Sbjct: 58 TCRAVLNPYCRVDFQAKIWICPFCFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPPG 117
Query: 123 GEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGF 182
+ PPVF+FVVDTC+IEEE+ LKSAL QAI LLP+N+LVGLITFGT V VHELG F
Sbjct: 118 SGGAPSPPVFVFVVDTCMIEEELGALKSALLQAIALLPENALVGLITFGTHVHVHELG-F 176
Query: 183 GQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFD 242
+ K+YVF+G+K+VSKDQ+LEQL KK +P+ G IAG RDGLSS + RFL+PA +
Sbjct: 177 SEC-SKSYVFRGNKEVSKDQILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASE 235
Query: 243 CEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPST 302
CEFTLNS LEELQKDPWPVPP R RCTG ALS+AA LLGACVPG+GARI+AFVGGP T
Sbjct: 236 CEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCT 295
Query: 303 EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQV 362
EGP AIVSK+LSEPIRSHKDLDKD+AP+Y KAVKFY+ L+KQLV QGHVLD+FAC+LDQV
Sbjct: 296 EGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQV 355
Query: 363 GVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF-HSGDYDLGLSSNGIFEINCSKDIK 421
GVAE+KVAVE+TGGLVVL++SFGH+VFKDS+RRVF G+ LGLS NG FE+NCSKD+K
Sbjct: 356 GVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFERDGEGSLGLSFNGTFEVNCSKDVK 415
Query: 422 VQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEIPDATLQS 481
VQG IGPCASLEKKGP SD +G+G T+AWK+CGLDK TSL + FE+ + Q
Sbjct: 416 VQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSG--QSNPQP 473
Query: 482 TNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSF 541
QF+ QFLT YQH+ GQ RLRVTT++RRWV G S ++L+AGFDQEAAAVVMARL S
Sbjct: 474 PGQQFFLQFLTRYQHSNGQTRLRVTTVTRRWVEGS-SSEELVAGFDQEAAAVVMARLASH 532
Query: 542 KMEIEAEFDPIRWLDKALIHMCSRFGDYQKDSPSSFSLSPRFSIFPQFMFHLRRSQFVQV 601
KME E EFD RWLD+ALI +CS+FGDY+KD PSSF LSP FS++PQFMF+LRRSQFVQV
Sbjct: 533 KMETEEEFDATRWLDRALIRLCSKFGDYRKDDPSSFRLSPNFSLYPQFMFNLRRSQFVQV 592
Query: 602 FNNSPDETAYFRMILNRENVTNSVVMIQPSLISYSFHSGPEPALLDVAAIAADRILLLDS 661
FNNSPDETAYFRM+LNRENVTNS+VMIQP+LISYSF+ PEP LLDVA+IAADRILLLDS
Sbjct: 593 FNNSPDETAYFRMMLNRENVTNSLVMIQPTLISYSFNGPPEPVLLDVASIAADRILLLDS 652
Query: 662 YFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVIMKERFPVPRLVICDQHG 721
YF+VVIFHG+TIAQWRKAGYHNQPEH+AFAQLL+AP DA I+KERFPVPRLV+CDQHG
Sbjct: 653 YFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIKERFPVPRLVVCDQHG 712
Query: 722 SQV----------GSYHNVQQMGGS 736
SQ +Y++ MGGS
Sbjct: 713 SQARFLLAKLNPSATYNSANAMGGS 737
|
Length = 761 |
| >gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|238745 cd01468, trunk_domain, trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|200443 cd11287, Sec23_C, C-terminal Actin depolymerization factor-homology domain of Sec23 | Back alignment and domain information |
|---|
| >gnl|CDD|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain | Back alignment and domain information |
|---|
| >gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain | Back alignment and domain information |
|---|
| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 762 | |||
| PLN00162 | 761 | transport protein sec23; Provisional | 100.0 | |
| KOG1986 | 745 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| COG5047 | 755 | SEC23 Vesicle coat complex COPII, subunit SEC23 [I | 100.0 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 100.0 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 100.0 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 100.0 | |
| cd01478 | 267 | Sec23-like Sec23-like: Protein and membrane traffi | 100.0 | |
| cd01479 | 244 | Sec24-like Sec24-like: Protein and membrane traffi | 100.0 | |
| cd01468 | 239 | trunk_domain trunk domain. COPII-coated vesicles c | 100.0 | |
| PF04811 | 243 | Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I | 100.0 | |
| PF08033 | 96 | Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP | 99.87 | |
| PF04815 | 103 | Sec23_helical: Sec23/Sec24 helical domain; InterPr | 99.75 | |
| PF04810 | 40 | zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: | 99.61 | |
| cd01465 | 170 | vWA_subgroup VWA subgroup: Von Willebrand factor t | 98.56 | |
| cd01463 | 190 | vWA_VGCC_like VWA Voltage gated Calcium channel li | 98.49 | |
| cd01451 | 178 | vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch | 98.46 | |
| cd01456 | 206 | vWA_ywmD_type VWA ywmD type:Von Willebrand factor | 98.43 | |
| cd01466 | 155 | vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact | 98.42 | |
| PRK13685 | 326 | hypothetical protein; Provisional | 98.42 | |
| cd01453 | 183 | vWA_transcription_factor_IIH_type Transcription fa | 98.31 | |
| PF00626 | 76 | Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel | 98.18 | |
| cd01472 | 164 | vWA_collagen von Willebrand factor (vWF) type A do | 98.17 | |
| TIGR00868 | 863 | hCaCC calcium-activated chloride channel protein 1 | 98.11 | |
| cd01470 | 198 | vWA_complement_factors Complement factors B and C2 | 98.11 | |
| cd01452 | 187 | VWA_26S_proteasome_subunit 26S proteasome plays a | 98.06 | |
| cd01467 | 180 | vWA_BatA_type VWA BatA type: Von Willebrand factor | 98.0 | |
| cd01461 | 171 | vWA_interalpha_trypsin_inhibitor vWA_interalpha tr | 97.97 | |
| TIGR03436 | 296 | acidobact_VWFA VWFA-related Acidobacterial domain. | 97.96 | |
| cd01480 | 186 | vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI | 97.93 | |
| PF13768 | 155 | VWA_3: von Willebrand factor type A domain | 97.87 | |
| PF13519 | 172 | VWA_2: von Willebrand factor type A domain; PDB: 3 | 97.83 | |
| TIGR03788 | 596 | marine_srt_targ marine proteobacterial sortase tar | 97.82 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 97.81 | |
| cd01482 | 164 | vWA_collagen_alphaI-XII-like Collagen: The extrace | 97.74 | |
| cd01469 | 177 | vWA_integrins_alpha_subunit Integrins are a class | 97.66 | |
| cd01474 | 185 | vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi | 97.62 | |
| cd01450 | 161 | vWFA_subfamily_ECM Von Willebrand factor type A (v | 97.53 | |
| cd01471 | 186 | vWA_micronemal_protein Micronemal proteins: The To | 97.49 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 97.47 | |
| cd01481 | 165 | vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V | 97.47 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 97.43 | |
| cd01477 | 193 | vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand | 97.4 | |
| smart00327 | 177 | VWA von Willebrand factor (vWF) type A domain. VWA | 97.33 | |
| PF00092 | 178 | VWA: von Willebrand factor type A domain; InterPro | 97.3 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 97.3 | |
| cd01476 | 163 | VWA_integrin_invertebrates VWA_integrin (invertebr | 97.25 | |
| COG1240 | 261 | ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis | 97.03 | |
| cd00198 | 161 | vWFA Von Willebrand factor type A (vWA) domain was | 97.0 | |
| PTZ00441 | 576 | sporozoite surface protein 2 (SSP2); Provisional | 96.9 | |
| cd01473 | 192 | vWA_CTRP CTRP for CS protein-TRAP-related protein: | 96.87 | |
| PF04056 | 193 | Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro | 96.7 | |
| smart00262 | 90 | GEL Gelsolin homology domain. Gelsolin/severin/vil | 96.7 | |
| cd01454 | 174 | vWA_norD_type norD type: Denitrifying bacteria con | 96.42 | |
| cd01458 | 218 | vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter | 96.24 | |
| cd01462 | 152 | VWA_YIEM_type VWA YIEM type: Von Willebrand factor | 95.34 | |
| KOG2884 | 259 | consensus 26S proteasome regulatory complex, subun | 94.13 | |
| TIGR00578 | 584 | ku70 ATP-dependent DNA helicase ii, 70 kDa subunit | 93.93 | |
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 93.77 | |
| cd01464 | 176 | vWA_subfamily VWA subfamily: Von Willebrand factor | 93.5 | |
| COG4245 | 207 | TerY Uncharacterized protein encoded in toxicity p | 92.45 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 89.88 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 89.01 | |
| COG5148 | 243 | RPN10 26S proteasome regulatory complex, subunit R | 88.74 | |
| cd01457 | 199 | vWA_ORF176_type VWA ORF176 type: Von Willebrand fa | 86.63 | |
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 86.32 | |
| smart00187 | 423 | INB Integrin beta subunits (N-terminal portion of | 81.19 |
| >PLN00162 transport protein sec23; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-156 Score=1369.22 Aligned_cols=734 Identities=70% Similarity=1.163 Sum_probs=675.2
Q ss_pred CCcccccCCCeeeecCCCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCCCCCcccCCCCceecCcceEEcCCceE
Q 004303 2 TEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIW 81 (762)
Q Consensus 2 ~~~~~~~~~~~iR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~~~~~vp~~~~~p~RC~~C~ayiNp~~~~~~~~~~w 81 (762)
|||+|.|+.++||+|||+||+|+.++++++|||||+|+||++.+ ++|+++++|+||++|+|||||||+|+.++++|
T Consensus 1 ~~~~~~e~~~gvR~s~n~~P~t~~~~~~~~iPlg~v~tPl~~~~----~vp~v~~~pvRC~~CraylNPf~~~d~~~~~W 76 (761)
T PLN00162 1 MDFAELEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLP----ELPVLPYDPLRCRTCRAVLNPYCRVDFQAKIW 76 (761)
T ss_pred CchhhhcccCceEeeeecCCCCHHHHhcCCCCeEEEEecCCcCC----CCCcCCCCCCccCCCcCEECCceEEecCCCEE
Confidence 79999999999999999999999999999999999999999865 68999999999999999999999999999999
Q ss_pred EecCCCCCCCCCcCCCCCCCCCCCccccCCCccEEEecC---CCCCCCCCCcEEEEEEECCCChhHHHHHHHHHHHHhhc
Q 004303 82 ICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPP---GPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDL 158 (762)
Q Consensus 82 ~C~~C~~~N~~p~~y~~~~~~~~~pEL~~~~~tvey~~~---~~~p~~~~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~ 158 (762)
+||||++.|++|++|..++++++||||.|+++||||++| .++| .||+|+||||+|..+++++.++++|+++|+.
T Consensus 77 ~C~~C~~~N~~P~~Y~~~~~~~~p~EL~p~~~TvEY~~p~~~~~~~---~pp~fvFvID~s~~~~~l~~lk~sl~~~L~~ 153 (761)
T PLN00162 77 ICPFCFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPPGSGGAP---SPPVFVFVVDTCMIEEELGALKSALLQAIAL 153 (761)
T ss_pred EccCCCCCCCCchHhcccCccCCChhhcCCceeEEEECCCCCCCCC---CCcEEEEEEecchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999888888999999888999999999 6777 8999999999999999999999999999999
Q ss_pred CCCCcEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHHHHHhhcccCCCCCCCccccCccCCCCcccc-cceE
Q 004303 159 LPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTI-ARFL 237 (762)
Q Consensus 159 lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~pl-~~~l 237 (762)
||++++|||||||+.||||+|+ .+ .+|+++||+|+++++.+|+++++++....+.+... .++...+..+.|. ++||
T Consensus 154 LP~~a~VGlITF~s~V~~~~L~-~~-~~~~~~Vf~g~k~~t~~~l~~~l~l~~~~~~~~~~-~~~~~~~~~~~p~~~~fL 230 (761)
T PLN00162 154 LPENALVGLITFGTHVHVHELG-FS-ECSKSYVFRGNKEVSKDQILEQLGLGGKKRRPAGG-GIAGARDGLSSSGVNRFL 230 (761)
T ss_pred CCCCCEEEEEEECCEEEEEEcC-CC-CCcceEEecCCccCCHHHHHHHhcccccccccccc-ccccccccccCCCcccee
Confidence 9999999999999999999998 66 68999999999999999999998774411111000 0000000012343 8999
Q ss_pred EechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCcccccCCCCCCc
Q 004303 238 VPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPI 317 (762)
Q Consensus 238 ~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~ 317 (762)
+|++||+..|+++||+|++++|++++++|+.||+|+||++|..+|+.+.++.||||++|++||||.|||+|+.++.++++
T Consensus 231 vpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~ 310 (761)
T PLN00162 231 LPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCTEGPGAIVSKDLSEPI 310 (761)
T ss_pred EEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhccCCCceEEEEEeCCCCCCCCceeecccccccc
Confidence 99999999999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred cCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccChhchhhhhccccceEEEeCCCChhhhHHHHHHHh
Q 004303 318 RSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF 397 (762)
Q Consensus 318 rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~~~~L~~~TGG~v~~~~~f~~~~~~~~l~~~l 397 (762)
|+|+|++++++++++++.+||++||++|+++||+||+|+++.+|+|++||+.|++.|||.+++|++|+.+.|+++|+|+|
T Consensus 311 rsh~di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~dqvglaem~~l~~~TGG~v~~~~sF~~~~f~~~l~r~~ 390 (761)
T PLN00162 311 RSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVF 390 (761)
T ss_pred cCccccccchhhhcchHHHHHHHHHHHHHHcCceEEEEEccccccCHHHHhhhHhhcCcEEEEeCCcChHHHHHHHHHHh
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -hccccCccceeeeEEEEEecCCceEEeEEcCccccCCCCCCcccccccCCCCCceeeecCCCCceEEEEEEEecCCCCc
Q 004303 398 -HSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEIPD 476 (762)
Q Consensus 398 -~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~isd~~~g~~~~~~~~l~~~~~~~s~~~~~~~~~~~~~~ 476 (762)
++..+++.+||+|+||||||+|++|++++||++...++++++||+++|.|+|+.|+++++++++||+|+|++++..+ .
T Consensus 391 ~r~~~~~~~~gf~a~~~VrtS~glkv~g~~G~~~s~~~~~~~vsd~~iG~g~T~~w~l~~l~~~~t~av~f~~~~~~~-~ 469 (761)
T PLN00162 391 ERDGEGSLGLSFNGTFEVNCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSGQ-S 469 (761)
T ss_pred cccccccccccceeEEEEEecCCeEEeeeEcCcccccccCCccccccccCCCCceeeecCcCcCCEEEEEEEEccccc-c
Confidence 55555667899999999999999999999999988778888999999999999999999999999999999998751 0
Q ss_pred ccccCCCCeEEEEEEEEEEecCCcEEEEEEeceeecccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCCchhHHHHHH
Q 004303 477 ATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSFKMEIEAEFDPIRWLD 556 (762)
Q Consensus 477 ~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~~~v~~~~D~ea~~~llak~a~~~~~~~~~~~~~~~l~ 556 (762)
.++ .....+||||+++||+.+|+|||||||++++++.. .++.+++++||+||++++|||+++.++.+++..|+++||+
T Consensus 470 ~~~-~~~~~~~iQ~a~lYt~~~G~rRiRV~T~~~~~~~~-~~~~~v~~~fDqeA~a~llaR~av~k~~~~~~~d~~r~ld 547 (761)
T PLN00162 470 NPQ-PPGQQFFLQFLTRYQHSNGQTRLRVTTVTRRWVEG-SSSEELVAGFDQEAAAVVMARLASHKMETEEEFDATRWLD 547 (761)
T ss_pred CCC-CCCceEEEEEEEEEEcCCCCEEEEEEccccCccCC-CCHHHHHHhcCHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 011 34567999999999999999999999999997642 1488999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCcCCCcccccHHHHHHHHhcccCcCCCCCChHHHHHHHHHHccCCHHHHHHhhcccceecc
Q 004303 557 KALIHMCSRFGDYQKDSPSSFSLSPRFSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMIQPSLISYS 636 (762)
Q Consensus 557 ~~l~~~~~~~~~y~~~~~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~ 636 (762)
++|+++|++|+.|||+++++|+||++|++||+|||+|+||++|+++|+|||||+|+++.++++++++++.||||+|++||
T Consensus 548 ~~li~~~~~f~~Yrk~~~~s~~Lp~~~~~lP~f~~~LrRS~~l~~~n~spDera~~r~~l~~~~~~~sl~mI~P~L~sy~ 627 (761)
T PLN00162 548 RALIRLCSKFGDYRKDDPSSFRLSPNFSLYPQFMFNLRRSQFVQVFNNSPDETAYFRMMLNRENVTNSLVMIQPTLISYS 627 (761)
T ss_pred HHHHHHHHHHhhhcccCCccccCCHHHHHHHHHHHHHhhhhhccCCCCCchHHHHHHHHHhcCCHHHHHHhhCCeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccccccccCeEEEEeCCcEEEEEEcCchhHHHHcccCCCchhHHHHHhhcCCHHHHHHHHHcCCCCcEEEE
Q 004303 637 FHSGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVIMKERFPVPRLVI 716 (762)
Q Consensus 637 ~~~~p~~~~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~i~~~R~~~p~~~~ 716 (762)
.+++|++++||.++|++|+|||||+|++|+||+|+.+++|++++||++|+|++|+++|++|+++|++|+++|||+||+++
T Consensus 628 ~~~~P~pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~~~~~Rfp~Pr~i~ 707 (761)
T PLN00162 628 FNGPPEPVLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIKERFPVPRLVV 707 (761)
T ss_pred CCCCCcceecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHHHHhcCCCCCeEEE
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCchhhhHHhh------hc------------cCCCcHhhHhhhhccc
Q 004303 717 CDQHGSQVGSYHNV------QQ------------MGGSLWMIVVCYLLSP 748 (762)
Q Consensus 717 ~~~g~sq~rf~~~l------~~------------~~~~~y~d~l~~~~~~ 748 (762)
|+||+|||||+..- .+ .+..|+..|+-||..-
T Consensus 708 ~~~~~SqaRfl~~klnPs~~~~~~~~~~~~~~~~tdd~sl~~f~~~l~~~ 757 (761)
T PLN00162 708 CDQHGSQARFLLAKLNPSATYNSANAMGGSDIIFTDDVSLQVFMEHLQRL 757 (761)
T ss_pred eCCCCcHHHHHHHhcCCcccccCCCCCCCCCeeecCCcCHHHHHHHHHHH
Confidence 99999999999433 11 1235888888887643
|
|
| >KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01468 trunk_domain trunk domain | Back alignment and domain information |
|---|
| >PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta | Back alignment and domain information |
|---|
| >cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) | Back alignment and domain information |
|---|
| >cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PRK13685 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme | Back alignment and domain information |
|---|
| >PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] | Back alignment and domain information |
|---|
| >cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins | Back alignment and domain information |
|---|
| >TIGR00868 hCaCC calcium-activated chloride channel protein 1 | Back alignment and domain information |
|---|
| >cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation | Back alignment and domain information |
|---|
| >cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins | Back alignment and domain information |
|---|
| >cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) | Back alignment and domain information |
|---|
| >TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain | Back alignment and domain information |
|---|
| >cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >PF13768 VWA_3: von Willebrand factor type A domain | Back alignment and domain information |
|---|
| >PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A | Back alignment and domain information |
|---|
| >TIGR03788 marine_srt_targ marine proteobacterial sortase target protein | Back alignment and domain information |
|---|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
| >cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration | Back alignment and domain information |
|---|
| >cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax | Back alignment and domain information |
|---|
| >cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell | Back alignment and domain information |
|---|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
| >cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
| >cd01477 vWA_F09G8-8_type VWA F09G8 | Back alignment and domain information |
|---|
| >smart00327 VWA von Willebrand factor (vWF) type A domain | Back alignment and domain information |
|---|
| >PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma | Back alignment and domain information |
|---|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
| >cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions | Back alignment and domain information |
|---|
| >COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PTZ00441 sporozoite surface protein 2 (SSP2); Provisional | Back alignment and domain information |
|---|
| >cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology | Back alignment and domain information |
|---|
| >PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex | Back alignment and domain information |
|---|
| >smart00262 GEL Gelsolin homology domain | Back alignment and domain information |
|---|
| >cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases | Back alignment and domain information |
|---|
| >cd01458 vWA_ku Ku70/Ku80 N-terminal domain | Back alignment and domain information |
|---|
| >cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) | Back alignment and domain information |
|---|
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 762 | ||||
| 3eg9_A | 764 | Crystal Structure Of The Mammalian Copii-Coat Prote | 0.0 | ||
| 2nup_A | 769 | Crystal Structure Of The Human Sec23a24A HETERODIME | 0.0 | ||
| 3efo_A | 765 | Crystal Structure Of The Mammalian Copii-Coat Prote | 0.0 | ||
| 2qtv_A | 772 | Structure Of Sec23-Sar1 Complexed With The Active F | 1e-157 | ||
| 1m2o_A | 768 | Crystal Structure Of The Sec23-Sar1 Complex Length | 1e-157 | ||
| 2yrc_A | 59 | Solution Structure Of The Zf-Sec23_sec24 From Human | 4e-11 | ||
| 2yrd_A | 59 | Solution Structure Of The Zf-Sec23_sec24 From Human | 7e-11 | ||
| 3eh2_A | 766 | Crystal Structure Of The Human Copii-Coat Protein S | 3e-10 | ||
| 3egd_B | 748 | Crystal Structure Of The Mammalian Copii-Coat Prote | 3e-10 | ||
| 2nup_B | 753 | Crystal Structure Of The Human Sec23a24A HETERODIME | 3e-10 | ||
| 3eh1_A | 751 | Crystal Structure Of The Human Copii-Coat Protein S | 2e-09 | ||
| 3efo_B | 770 | Crystal Structure Of The Mammalian Copii-Coat Prote | 3e-06 | ||
| 1pcx_A | 810 | Crystal Structure Of The Copii Coat Subunit, Sec24, | 7e-04 | ||
| 1m2v_B | 926 | Crystal Structure Of The Yeast Sec2324 HETERODIMER | 8e-04 |
| >pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF MEMBRIN Length = 764 | Back alignment and structure |
|
| >pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 769 | Back alignment and structure |
| >pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 765 | Back alignment and structure |
| >pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 | Back alignment and structure |
| >pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 | Back alignment and structure |
| >pdb|2YRC|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Length = 59 | Back alignment and structure |
| >pdb|2YRD|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Mutant V69a Length = 59 | Back alignment and structure |
| >pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 | Back alignment and structure |
| >pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 | Back alignment and structure |
| >pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 | Back alignment and structure |
| >pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 | Back alignment and structure |
| >pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 | Back alignment and structure |
| >pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 | Back alignment and structure |
| >pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 | Back alignment and structure |
|---|
Score = 642 bits (1657), Expect = 0.0
Identities = 338/730 (46%), Positives = 467/730 (63%), Gaps = 23/730 (3%)
Query: 1 MTEFMDL----EAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPY 56
MT +++ E +DGVR WNV P ++ EA+ VVPV+A++TP+K P +P + Y
Sbjct: 5 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQY 60
Query: 57 APLRCR--TCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTT 114
P+ C TCR++LNP VD+ AK+W C FC+QRN FPP YA I++ N PAEL PQ+++
Sbjct: 61 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSS 120
Query: 115 IEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLV 174
IEY +P +F++VVDTC+ +E++ LK ++ ++ LLP +LVGLITFG +V
Sbjct: 121 IEYVVLRG---PQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMV 177
Query: 175 QVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIA 234
QVHELG + I K+YVF+G+KD+S QL E L K
Sbjct: 178 QVHELGC--EGISKSYVFRGTKDLSAKQLQEMLGL----SKVPVTQATRGPQVQQPPPSN 231
Query: 235 RFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARIL 294
RFL P + L +L ELQ+DPWPVP +R R +G ALSIA LL P +GARI+
Sbjct: 232 RFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIM 291
Query: 295 AFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDL 354
F+GGP+T+GP +V L PIRS D+DKD+A + K K ++AL+ + GHV+D+
Sbjct: 292 MFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDI 351
Query: 355 FACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF-HSGDYDLGLSSNGIFE 413
+ACALDQ G+ E+K TGG +V+ DSF ++FK + +RVF + G E
Sbjct: 352 YACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLE 411
Query: 414 INCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKE 473
I S++IK+ G IGPC SL KGP S+ +G G T WK+CGL T+L + FE+V +
Sbjct: 412 IKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQH 471
Query: 474 IPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAV 533
+ QF+T YQH+ GQ R+RVTT++R W +Q++ A FDQEAAA+
Sbjct: 472 NAP---IPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAI 528
Query: 534 VMARLVSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDSPSSFSLSPRFSIFPQFMFHL 593
+MARL ++ E E D +RWLD+ LI +C +FG+Y KD PSSF S FS++PQFMFHL
Sbjct: 529 LMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHL 588
Query: 594 RRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMIQPSLISYSFHSGPEPALLDVAAIAA 653
RRS F+QVFNNSPDE++Y+R R+++T S++MIQP L +YSF PEP LLD ++I A
Sbjct: 589 RRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILA 648
Query: 654 DRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVIMKERFPVPR 713
DRILL+D++F ++I+HG TIAQWRK+GY + PE++ F LLQAP DDA I+ RFP+PR
Sbjct: 649 DRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPR 708
Query: 714 LVICDQHGSQ 723
+ + GSQ
Sbjct: 709 YIDTEHGGSQ 718
|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Length = 59 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 762 | |||
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 100.0 | |
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 100.0 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 100.0 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 100.0 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 100.0 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 100.0 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 100.0 | |
| 2yrc_A | 59 | Protein transport protein SEC23A; zinc binding, co | 99.63 | |
| 4fx5_A | 464 | VON willebrand factor type A; structural genomics, | 99.12 | |
| 3ibs_A | 218 | Conserved hypothetical protein BATB; structural ge | 98.57 | |
| 4b4t_W | 268 | RPN10, 26S proteasome regulatory subunit RPN10; hy | 98.3 | |
| 1q0p_A | 223 | Complement factor B; VON willebrand factor, MAC-1, | 98.14 | |
| 1ijb_A | 202 | VON willebrand factor; dinucleotide-binding fold, | 98.14 | |
| 1v7p_C | 200 | Integrin alpha-2; snake venom, C-type lectin, anta | 98.11 | |
| 2b2x_A | 223 | Integrin alpha-1; computational design, antibody-a | 98.08 | |
| 1atz_A | 189 | VON willebrand factor; collagen-binding, hemostasi | 98.04 | |
| 1n3y_A | 198 | Integrin alpha-X; alpha/beta rossmann fold, cell a | 97.97 | |
| 2x31_A | 189 | Magnesium-chelatase 60 kDa subunit; ligase, bacter | 97.97 | |
| 1pt6_A | 213 | Integrin alpha-1; cell adhesion; 1.87A {Homo sapie | 97.97 | |
| 1mf7_A | 194 | Integrin alpha M; cell adhesion; 1.25A {Homo sapie | 97.93 | |
| 2x5n_A | 192 | SPRPN10, 26S proteasome regulatory subunit RPN10; | 97.92 | |
| 2odp_A | 509 | Complement C2; C3/C5 convertase, complement serin | 97.92 | |
| 1shu_X | 182 | Anthrax toxin receptor 2; alpha/beta rossmann fold | 97.9 | |
| 1rrk_A | 497 | Complement factor B; BB, hydrolase; 2.00A {Homo sa | 97.87 | |
| 4hqf_A | 281 | Thrombospondin-related anonymous protein, trap; ma | 97.78 | |
| 1mjn_A | 179 | Integrin alpha-L; rossmann fold, immune system; 1. | 97.75 | |
| 4hqo_A | 266 | Sporozoite surface protein 2; malaria, gliding mot | 97.66 | |
| 3n2n_F | 185 | Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho | 97.55 | |
| 3hrz_D | 741 | Complement factor B; serine protease, glycosilated | 97.55 | |
| 3zqk_A | 199 | VON willebrand factor; blood clotting, adamts-13, | 97.35 | |
| 1kcq_A | 104 | Gelsolin, brevin, ADF, AGEL; alpha-beta structure, | 97.31 | |
| 2xgg_A | 178 | Microneme protein 2; A/I domain, cell adhesion, hy | 97.28 | |
| 1jey_B | 565 | KU80; double-strand DNA break repair, non-homologo | 96.96 | |
| 3k6s_A | 1095 | Integrin alpha-X; cell receptor, adhesion molecule | 96.95 | |
| 1svq_A | 114 | Severin; actin-binding; NMR {Dictyostelium discoid | 96.69 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 95.81 | |
| 3t3p_B | 472 | Integrin beta-3; integrin, cell adhesion, blood cl | 95.42 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 95.39 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 95.33 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 95.09 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 94.76 | |
| 3v4v_B | 503 | Integrin beta-7; cell adhesion, madcam-1, membrane | 94.75 | |
| 1jey_A | 609 | KU70; double-strand DNA break repair, non-homologo | 94.68 | |
| 2ww8_A | 893 | RRGA, cell WALL surface anchor family protein; IGG | 94.67 | |
| 3vi3_B | 454 | Integrin beta-1; beta propeller fold, rossman fold | 94.01 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 93.93 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 93.62 | |
| 3rag_A | 242 | Uncharacterized protein; structural genomics, PSI- | 92.71 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 91.75 | |
| 2iue_A | 212 | Pactolus I-domain; membrane protein, CD, ITC, limb | 89.25 | |
| 1yvr_A | 538 | RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, | 88.08 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 86.63 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 84.9 | |
| 2j9u_B | 76 | VPS36, vacuolar protein sorting-associated protein | 84.14 |
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-152 Score=1350.43 Aligned_cols=732 Identities=41% Similarity=0.749 Sum_probs=669.3
Q ss_pred CCcccccCCCeeeecCCCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCCCCCcccCC--CCceecCcceEEcCCc
Q 004303 2 TEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT--CRSILNPFSIVDFAAK 79 (762)
Q Consensus 2 ~~~~~~~~~~~iR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~~~~~vp~~~~~p~RC~~--C~ayiNp~~~~~~~~~ 79 (762)
|||+++|+++|||+|||+||.|++++++++|||||+|+||++.+ ++|+++++|+||++ |+|||||||+|+.+|+
T Consensus 1 ~~~~~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~ 76 (768)
T 1m2o_A 1 MDFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYD----ELNVAPYNPVVCSGPHCKSILNPYCVIDPRNS 76 (768)
T ss_dssp -CHHHHHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCT----TCCEECSCCCBCCSTTTCCBCCTTSCEETTTT
T ss_pred CCcccccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCC----CCCcCCCCCCccCCCCCCeEECCceEEeCCCC
Confidence 89999999999999999999999999999999999999999754 68999999999999 9999999999999999
Q ss_pred eEEecCCCCCCCCCcCCCCCCCCCCCccccCCCccEEEecCCCCCCCCCCcEEEEEEECCCChhHHHHHHHHHHHHhhcC
Q 004303 80 IWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLL 159 (762)
Q Consensus 80 ~w~C~~C~~~N~~p~~y~~~~~~~~~pEL~~~~~tvey~~~~~~p~~~~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~l 159 (762)
+|+||||++.|++|++|.++++.++||||. ++||||++|+++| .||+|+||||+|.+++++++++++|+++|+.|
T Consensus 77 ~W~C~~C~~~N~~P~~y~~~~~~~~~pEL~--~~tvEy~~p~~~~---~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~L 151 (768)
T 1m2o_A 77 SWSCPICNSRNHLPPQYTNLSQENMPLELQ--STTIEYITNKPVT---VPPIFFFVVDLTSETENLDSLKESIITSLSLL 151 (768)
T ss_dssp EECCTTTCCCCBCCGGGCC---CCCCGGGT--CSEEEEECSCCCC---SCCEEEEEEECCSCHHHHHHHHHHHHHHHHTS
T ss_pred EEEcccCCCCCCCChHHccCCcccCChhhc--cCCEEEECCCCCC---CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998888889999997 9999999999888 99999999999999999999999999999999
Q ss_pred CCCcEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHHHHHh-hcccCCCCCCCccccCc-cCCCCc--ccccc
Q 004303 160 PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQL-NFFIKKPKPSTGVIAGV-RDGLSS--DTIAR 235 (762)
Q Consensus 160 p~~~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l~~~~-~~~~~~~~p~~~~~~~~-~~~~~~--~pl~~ 235 (762)
|++++|||||||+.||||+++ .+ .+++++||+|+++++.+++++++ ++.+. ..++. .+.. ...+.+ .|.++
T Consensus 152 p~~~~VGlITf~~~V~~y~l~-~~-~~~~~~V~~g~k~~~~~q~~~~l~~l~~~-~~~~~--~~~~~~~~f~p~~~~~~~ 226 (768)
T 1m2o_A 152 PPNALIGLITYGNVVQLHDLS-SE-TIDRCNVFRGDREYQLEALTEMLTGQKPT-GPGGA--ASHLPNAMNKVTPFSLNR 226 (768)
T ss_dssp CTTCEEEEEEESSEEEECCCS-SS-SSEEEEEEETTSCCCHHHHHHHHHSCCCC------------------CCSSSGGG
T ss_pred CCCCEEEEEEECCEEEEEECC-CC-CCcceeeecCCccccHHHHHHHHhhcccc-ccCCc--cccccccccccccCCccc
Confidence 999999999999999999999 66 58999999999999999999998 76431 00000 0000 000011 22489
Q ss_pred eEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCcccccCCCCC
Q 004303 236 FLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSE 315 (762)
Q Consensus 236 ~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~ggkIi~F~sg~pt~GpG~l~~~~~~~ 315 (762)
||+|++||++.|+++|++|++++|++++++++.||+|+||++|..+|++++++.||||++|++|+||.|||+|+.++.++
T Consensus 227 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~ 306 (768)
T 1m2o_A 227 FFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNSELKD 306 (768)
T ss_dssp GSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCSBTTS
T ss_pred eeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCcccccccccc
Confidence 99999999999999999999999999999999999999999999999987778999999999999999999999999999
Q ss_pred CccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccChhchhhhhccccceEEEeCCCChhhhHHHHHH
Q 004303 316 PIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRR 395 (762)
Q Consensus 316 ~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~~~~L~~~TGG~v~~~~~f~~~~~~~~l~~ 395 (762)
++|+|+|++|+++++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++|.++++|
T Consensus 307 ~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l~r 386 (768)
T 1m2o_A 307 PLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLR 386 (768)
T ss_dssp CCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHHH
T ss_pred ccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHHHHHHHH
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-hccccCccceeeeEEEEEecCCceEEeEEcCccccCC-CCCCcccccccCCCCCceeeecCCCCceEEEEEEEecCC
Q 004303 396 VF-HSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEK-KGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKE 473 (762)
Q Consensus 396 ~l-~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~-~~~~isd~~~g~~~~~~~~l~~~~~~~s~~~~~~~~~~~ 473 (762)
.| ++..+++.+||+|+||||||+|++|++++||+++.++ +++++||+++|.++++.|+++++++++||+|+|+++++.
T Consensus 387 ~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~~~~~~ 466 (768)
T 1m2o_A 387 LFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTA 466 (768)
T ss_dssp TTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEEECCC-
T ss_pred HHhhccccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEEEEEEEecccc
Confidence 99 5555556799999999999999999999999998876 888999999999999999999999999999999999986
Q ss_pred CCcc-----cccC--CCCeEEEEEEEEEEecCCcEEEEEEeceeecccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhcC
Q 004303 474 IPDA-----TLQS--TNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSFKMEIE 546 (762)
Q Consensus 474 ~~~~-----~~~~--~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~~~v~~~~D~ea~~~llak~a~~~~~~~ 546 (762)
...+ ++ . ....+|||+|++||+.+|+|||||||+++|++++ ++.++|+++|+||++++|+|+|+.++.++
T Consensus 467 ~~~~~~~~~~l-~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~~--~~~~v~~~~Dqea~~~llar~av~~~~~~ 543 (768)
T 1m2o_A 467 ANSNPMMSAPG-SADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPF--GTPAIAASFDQEAAAVLMARIAVHKAETD 543 (768)
T ss_dssp -----------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEECT--TCHHHHHTBCHHHHHHHHHHHHHHHTTSS
T ss_pred ccccccccccc-cccCCCcEEEEEEEEEEcCCCCEEEEEEeecccccCc--cHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 3100 00 1 3578999999999999999999999999999962 37899999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHhcccccCCCCCcCCCcccccHHHHHHHHhcccCcCCCCCChHHHHHHHHHHccCCHHHHHH
Q 004303 547 AEFDPIRWLDKALIHMCSRFGDYQKDSPSSFSLSPRFSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVV 626 (762)
Q Consensus 547 ~~~~~~~~l~~~l~~~~~~~~~y~~~~~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~s~Der~~~~~~l~~~~~~~~~~ 626 (762)
+..|+|+||+++|++++++|+.|||+++++|+||++||+||+|||+|+||++|++++++||||+|+++.++++++.+++.
T Consensus 544 ~~~d~r~~l~~~li~l~~~~~~Yrk~~~~~l~lp~~lk~lP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~~~l~ 623 (768)
T 1m2o_A 544 DGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTNSLI 623 (768)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSBCCTTCGGGCBCCTTTTHHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHhcccccCCCCCChhHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccceecccCCCCccccccccccccCeEEEEeCCcEEEEEEcCchhHHHHcccCCCchhHHHHHhhcCCHHHHHHHHH
Q 004303 627 MIQPSLISYSFHSGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVIMK 706 (762)
Q Consensus 627 ~iyP~L~~~~~~~~p~~~~Ls~~~l~~~~iyLlD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~i~~ 706 (762)
||||+||++|.++.|++++||.++|+++||||||+|+.++||+|+++++|++++|++++++++++.++++|+.++++|++
T Consensus 624 ~iyP~L~~~~~~~~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~ll~~p~~~a~~i~~ 703 (768)
T 1m2o_A 624 MIQPTLTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEEPKLEAAELLV 703 (768)
T ss_dssp HHSCEEEEECSSSCCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTGGGSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCeEEEecCCCCCcceeCcHHHcCCCCEEEEECCCEEEEEECCcchHHHhcccCCCchhhhHHHHhhhhHHHHHHHHh
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEccCCchhhhHH-hh--hcc--------------CCCcHhhHhhhhccccc
Q 004303 707 ERFPVPRLVICDQHGSQVGSYH-NV--QQM--------------GGSLWMIVVCYLLSPGK 750 (762)
Q Consensus 707 ~R~~~p~~~~~~~g~sq~rf~~-~l--~~~--------------~~~~y~d~l~~~~~~~~ 750 (762)
+|+|+|++++++||+||+||+. .| +.. +..||.+||+|||..++
T Consensus 704 ~R~p~Pr~i~~~~~~sqarfl~s~L~p~~~~~~~~~~~~~~i~tdd~S~~~f~~~L~k~~v 764 (768)
T 1m2o_A 704 DRFPLPRFIDTEAGGSQARFLLSKLNPSDNYQDMARGGSTIVLTDDVSLQNFMTHLQQVAV 764 (768)
T ss_dssp TCSSCCEEEEEETTCGGGHHHHTTSBCC-----------CCCCCCSCCHHHHHHHHHHHHC
T ss_pred cCCCCceEEEECCCCcHHHHHHHHcCCCccccccccCCccccccCCcCHHHHHHHHHHHHh
Confidence 9999999999999999999994 44 321 23799999999998654
|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A | Back alignment and structure |
|---|
| >4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} | Back alignment and structure |
|---|
| >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C | Back alignment and structure |
|---|
| >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A | Back alignment and structure |
|---|
| >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A | Back alignment and structure |
|---|
| >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A | Back alignment and structure |
|---|
| >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G | Back alignment and structure |
|---|
| >2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* | Back alignment and structure |
|---|
| >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* | Back alignment and structure |
|---|
| >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A | Back alignment and structure |
|---|
| >4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A | Back alignment and structure |
|---|
| >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... | Back alignment and structure |
|---|
| >4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* | Back alignment and structure |
|---|
| >3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* | Back alignment and structure |
|---|
| >3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} | Back alignment and structure |
|---|
| >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* | Back alignment and structure |
|---|
| >3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* | Back alignment and structure |
|---|
| >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B | Back alignment and structure |
|---|
| >2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
| >2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 762 | ||||
| d2qtva3 | 271 | c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar | 1e-91 | |
| d2qtva1 | 103 | a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Sacchar | 6e-58 | |
| d1pd0a3 | 252 | c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar | 4e-54 | |
| d2qtva2 | 176 | b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (S | 2e-47 | |
| d2qtva2 | 176 | b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (S | 4e-15 | |
| d2qtva4 | 142 | d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccha | 2e-47 | |
| d2qtva5 | 75 | g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar | 1e-28 | |
| d1pd0a1 | 107 | a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Sacchar | 3e-24 | |
| d1pd0a5 | 85 | g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha | 8e-19 | |
| d1pd0a2 | 177 | b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast | 0.004 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 285 bits (731), Expect = 1e-91
Identities = 106/271 (39%), Positives = 160/271 (59%), Gaps = 3/271 (1%)
Query: 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIP 187
VPP+F FVVD E + LK ++ ++ LLP N+L+GLIT+G +VQ+H+L I
Sbjct: 1 VPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSET--ID 58
Query: 188 KTYVFKGSKDVSKDQLLEQLNFF-IKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFT 246
+ VF+G ++ + L E L P + + + ++ ++ RF +P EF
Sbjct: 59 RCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFK 118
Query: 247 LNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPA 306
LN +LE L D W VP R R TG+AL+IA+ LL C ARI+ F GP T P
Sbjct: 119 LNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPG 178
Query: 307 AIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAE 366
IV+ L +P+RSH D+D D A HY KA KFY+ +++++ GH +D+FA DQ+G++E
Sbjct: 179 LIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSE 238
Query: 367 LKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF 397
+K + TGG+++L+D+F A+FK S R+F
Sbjct: 239 MKQLTDSTGGVLLLTDAFSTAIFKQSYLRLF 269
|
| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 103 | Back information, alignment and structure |
|---|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 | Back information, alignment and structure |
|---|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 142 | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 762 | |||
| d2qtva3 | 271 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1pd0a3 | 252 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d2qtva1 | 103 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.93 | |
| d2qtva4 | 142 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.91 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.87 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.85 | |
| d2qtva5 | 75 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.85 | |
| d1pd0a1 | 107 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.82 | |
| d1pd0a5 | 85 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.8 | |
| d1pd0a4 | 173 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.57 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.55 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.1 | |
| d1atza_ | 184 | von Willebrand factor A3 domain, vWA3 {Human (Homo | 97.88 | |
| d1q0pa_ | 209 | Complement factor B domain {Human (Homo sapiens) [ | 97.85 | |
| d1shux_ | 181 | Capillary morphogenesis protein 2 domain {Human (H | 97.72 | |
| d1n3ya_ | 189 | Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI | 97.69 | |
| d1svya_ | 102 | Severin, domain 2 {Dictyostelium discoideum [TaxId | 97.5 | |
| d2fh1a3 | 113 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.47 | |
| d1jeya2 | 220 | Ku70 subunit N-terminal domain {Human (Homo sapien | 97.39 | |
| d1ijba_ | 202 | von Willebrand factor A1 domain, vWA1 {Human (Homo | 97.38 | |
| d1j72a2 | 116 | Macrophage capping protein Cap G {Human (Homo sapi | 97.36 | |
| d1pt6a_ | 192 | Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId | 97.35 | |
| d1jeyb2 | 236 | Ku80 subunit N-terminal domain {Human (Homo sapien | 97.29 | |
| d1mf7a_ | 194 | Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub | 97.22 | |
| d1v7pc_ | 193 | Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId | 97.2 | |
| d1kcqa_ | 104 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.13 | |
| d1d0na3 | 121 | Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | 97.09 | |
| d1tyeb2 | 248 | Integrin beta A domain {Human (Homo sapiens) [TaxI | 97.02 | |
| d1mjna_ | 179 | Integrin CD11a/CD18 (Leukocyte function associated | 96.9 | |
| d2fh1a2 | 96 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 96.8 | |
| d1j72a3 | 107 | Macrophage capping protein Cap G {Human (Homo sapi | 96.59 | |
| d1yvra2 | 174 | 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c | 94.0 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-52 Score=436.81 Aligned_cols=267 Identities=39% Similarity=0.698 Sum_probs=238.1
Q ss_pred CCcEEEEEEECCCChhHHHHHHHHHHHHhhcCCCCcEEEEEEeCCeEEEEEcCCCCCCCCeeEEecCCccCChHHHHHHh
Q 004303 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQL 207 (762)
Q Consensus 128 ~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~V~~g~~~~~~~~l~~~~ 207 (762)
.||+||||||+|.++++++.++++|+++|+.+|++++|||||||++||||+++ .. ..++.+|++|+++|+.+++++++
T Consensus 1 ~Pp~yvFvIDvs~~a~~~~~l~~~l~~~l~~lp~~~~VgiITfd~~v~~y~l~-~~-~~~~~~v~~g~~~~~~~~~~~~~ 78 (271)
T d2qtva3 1 VPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLS-SE-TIDRCNVFRGDREYQLEALTEML 78 (271)
T ss_dssp SCCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEECS-CS-SCCEEEEEESSSCCCHHHHHHHH
T ss_pred CCCEEEEEEECCccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECC-CC-cCccceeccCccccCHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999998 65 68899999999999999999987
Q ss_pred hcccCCC--CCCCccccCccCCCCcccc-cceEEechhcHHHHHHHHHHccCCCCCCCCCCCCcchhhHHHHHHHHHhhc
Q 004303 208 NFFIKKP--KPSTGVIAGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGA 284 (762)
Q Consensus 208 ~~~~~~~--~p~~~~~~~~~~~~~~~pl-~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~ 284 (762)
....... .+.+.. .......+.|. ++|++|+++|++.|+.+|++|++++|++++++++.||+|+||++|..+|++
T Consensus 79 ~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~ 156 (271)
T d2qtva3 79 TGQKPTGPGGAASHL--PNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQG 156 (271)
T ss_dssp HCCC-------------------CCTTCGGGGSEEHHHHHHHHHHHHHHCCCCCCCCCTTBCCCCCHHHHHHHHHHHHHH
T ss_pred hcccccccccccccc--ccccccccCCccccccccHHHHHHHHHHHHHHhccCcccCCCCCCcccchHHHHHHHHHHHHh
Confidence 6542100 000000 00001112333 789999999999999999999999998999999999999999999999997
Q ss_pred cCCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCh
Q 004303 285 CVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGV 364 (762)
Q Consensus 285 ~~~~~ggkIi~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l 364 (762)
..++.||||++|++|+||.|||+|+.++.++.+|+|+|++|+++++++++.+||++||.+|++.||+||+|+++.+|+|+
T Consensus 157 ~~~~~gGkI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~~isvDlF~~s~~~~dl 236 (271)
T d2qtva3 157 CYKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGM 236 (271)
T ss_dssp HCTTSCEEEEEEESSCCCSSSSCSSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCCSH
T ss_pred hccCCCcEEEEEeCCCCCCCCccccccccccccCCccchhhhhhhhhhhHHHHHHHHHHHHHHCCeEEEEEEecCccCCh
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhhhhccccceEEEeCCCChhhhHHHHHHHhh
Q 004303 365 AELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFH 398 (762)
Q Consensus 365 ~~~~~L~~~TGG~v~~~~~f~~~~~~~~l~~~l~ 398 (762)
++|++|++.|||.+++|++|+.+.|+++|+|+|.
T Consensus 237 ~~l~~l~~~TGG~v~~~~~F~~~~f~~~l~r~~~ 270 (271)
T d2qtva3 237 SEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFA 270 (271)
T ss_dssp HHHTHHHHTTTCCEEEESCTTSHHHHHHHHHTTC
T ss_pred HHHHhHHhhCCceEEEeCCcCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999883
|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
| >d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
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