Citrus Sinensis ID: 004328

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-
MQGYQAQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLGPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccHHHHHHHHEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccHHHHHHHHHHHccccHHcccccccccEEEEEccccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHcccccccccccEEEEEcccccHHHHHHccccEEEEcccHHHHHHHHHHccccHHHHHHHHHcccccEEEEEEccccccccHHHHHccccccEEEEEEEccEEEEccccccccccccEEEEEEEccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccEEEEccccccHHHHHHHHHcccccccEEEEEEccccHHHHHccccccccccccEEEEEEEcccccHHHHHHHHHccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHccccccEEcHHHHHHHHHHHHHHcccHHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHHHHccEEEEEEEEcccEEEcccccccccEEccccEEEEEEcccccccccc
ccccHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHEcccccccccHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccEEEEccccHHHHHHHHHHHHcHHccccccccccccEEEEEccccHHHHHHHHHHHcccccccEEEEEccccccHHHHHHccHHHccEEEEEccccccccHHHHHHHHHHHHHHccccccccEEEEEEccccHHHHHHcccccEEEHHHHHHHHHHHHHHcccHHHHHHHHHcccccEEEEEEccccccccHHHHHHHccccEEEEEEcccEEEEccccccEEccccEEEEEEccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHcccccccEEEEEEEEcccccHHHHHHcccccccccEccccccEEEEEEEccHHcccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccEEEccccccEEEcHHHHHHHHHHHHccHHHHHHHHHHHcccccEEEEEcHHHHccccccccHHHHHHHHHHcccEEEEEEccccEEEccccccccEEEccccEEEEEEcccccccEEc
MQGYQAQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPsmvwtlgatgspfacmsnslnkpmplkldvslpslQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVvfggflffkfrdeTQSLEDCLWEAWACLISssthlkqrTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERAAANKARAIIIlptkgdryevdtDAFLSVlalqpipkmnsvptivevsnpntCELLKSlsglkvepveNVASKLFVQCSRQKGLIKIYRHLLNYRKNIfnlwsfpnlagikyRQLRRGFQEAVVCGlyrngkiyfhpnddetlqptdkilfiapihgkkkprlassnvanrMNISQHLKVLENNSDSTSYAIELVNARLELIAkrpskpgskatdgnlgpkerilllgwrPDVVEMIEEYdnylgpgsvleilsdvplddrkrasnaighgklkNVQVFHkignplnfetLKDTIMNIQnsfkdgeelplSIVVIsdrewllgdpsradkQSAYSLLLAENICNKLGVKVQNLVAEIVDSklgkqiarnkpsltYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMkegenpsffelSERAHLRREVAIGYvkdnkkvinpvpkseplsltltdSLIVISelegeqpivl
MQGYQAQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLIsssthlkqrtrVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAkdlnhidiLSKSCSLTLTKSYERAaankaraiiilptkgdryEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELiakrpskpgskatdgnlgpkeriLLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNaighgklknvqvFHKIGNPLNFETLKDTIMNIQNsfkdgeelpLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVdsklgkqiarnKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIgyvkdnkkvinpvpkseplsltltDSLIVISelegeqpivl
MQGYQAQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYLFNVQLERNVATflvvlavvcfsfvvfggflffkfRDETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDIlskscsltltksYEraaankaraiiiLPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLGPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL
*****AQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHG*******************************SYAIELVNARLELI*******************ERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPV*****LSLTLTDSLIVIS**********
****QAQ*MIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQK*RE****QVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKK*************************************************************ERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVV*****************SAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL
MQGYQAQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLGPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL
*QGYQAQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLG**TARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKP**A************************SYAIELVNARLELI****************GPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQGYQAQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLGPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query761 2.2.26 [Sep-21-2011]
Q940Y9817 Putative ion channel POLL yes no 0.964 0.898 0.711 0.0
Q8VZM7813 Putative ion channel POLL no no 0.961 0.900 0.666 0.0
Q75LD5893 Probable ion channel CAST no no 0.730 0.622 0.264 7e-54
Q5H8A6853 Ion channel CASTOR OS=Lot N/A no 0.756 0.675 0.259 3e-53
Q5N941965 Probable ion channel POLL no no 0.734 0.579 0.253 4e-50
Q9LTX4824 Probable ion channel POLL no no 0.775 0.716 0.243 6e-49
Q6RHR6882 Ion channel DMI1 OS=Medic N/A no 0.788 0.680 0.236 4e-47
Q4VY51894 Probable ion channel SYM8 N/A no 0.754 0.642 0.238 8e-46
Q5H8A5917 Ion channel POLLUX OS=Lot N/A no 0.752 0.624 0.234 2e-45
>sp|Q940Y9|POLL2_ARATH Putative ion channel POLLUX-like 2 OS=Arabidopsis thaliana GN=At5g43745 PE=2 SV=1 Back     alignment and function desciption
 Score = 1088 bits (2814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/755 (71%), Positives = 618/755 (81%), Gaps = 21/755 (2%)

Query: 7   QLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLK 66
           +++IG +  Y +FR+ Q        KI Q+L P +V      G PFAC SNSL  P PLK
Sbjct: 84  KVVIGCIPLYAVFRIAQ--------KICQEL-PRLVQNSVGAGLPFACASNSL--PTPLK 132

Query: 67  LDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQ 126
           LDVS PS QD+RW LAR LYLFN+QLE+N+ TFLV L + C SFV+ GG LFFKFR +  
Sbjct: 133 LDVSFPSFQDIRWGLARFLYLFNIQLEKNIGTFLVALMIACVSFVIIGGLLFFKFRKDL- 191

Query: 127 SLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKL 186
            LEDCLWEAWACLISSSTHLKQ+TR+ERVIGF+LAIWGILFYSRLLSTMTEQFR NM KL
Sbjct: 192 PLEDCLWEAWACLISSSTHLKQKTRIERVIGFVLAIWGILFYSRLLSTMTEQFRYNMTKL 251

Query: 187 REGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQ 246
           REGAQMQVLE+DHII+CG+NSHL FILKQLN YHE +VRLGTATARKQR+LL+SD PRKQ
Sbjct: 252 REGAQMQVLEADHIIICGINSHLPFILKQLNSYHEHAVRLGTATARKQRLLLMSDTPRKQ 311

Query: 247 MDKLAENIAKDLNHIDILSKSCSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLS 306
           MDKLAE  +KD NHIDIL+KSCSL LTKS+ERAAA+ ARAIIILPTKGDRYEVDTDAFLS
Sbjct: 312 MDKLAEAYSKDFNHIDILTKSCSLNLTKSFERAAASMARAIIILPTKGDRYEVDTDAFLS 371

Query: 307 VLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIY 366
           VLALQPI KM S+PTIVEVS+PNT +LLKS+SGLKVEPVENV SKLFVQCSRQK LIKIY
Sbjct: 372 VLALQPIQKMESIPTIVEVSSPNTYDLLKSISGLKVEPVENVTSKLFVQCSRQKDLIKIY 431

Query: 367 RHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDK 426
           RHLLNY KN+FNL SFPNL G KYRQLR GFQE VVCGL R+GK+ FHPND+E L  TDK
Sbjct: 432 RHLLNYSKNVFNLCSFPNLVGTKYRQLRLGFQEVVVCGLLRDGKVNFHPNDNEELMETDK 491

Query: 427 ILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSK 486
           +LFIAP++ KKK  L +            L+ +   +D+     E   +RL  I  RP K
Sbjct: 492 LLFIAPLNWKKKQLLYT---------DMKLENITVPTDTRKQVFEKKRSRLSKIIMRPRK 542

Query: 487 PGSKATDGNLGPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAI 546
             SK +D   GP E ILLLGWR DVV+MIEE+DNYLGPGS +EILSDV L+DR+R  ++I
Sbjct: 543 SLSKGSDSVKGPTESILLLGWRGDVVQMIEEFDNYLGPGSSMEILSDVSLEDRRRVGDSI 602

Query: 547 GHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRA 606
           G  K+KN+QV HK+GNPLN++TLK TIM +++ ++ G+ +PL+I+VISDR+WLLGDPSRA
Sbjct: 603 GSVKIKNIQVSHKVGNPLNYDTLKQTIMRMKSKYRKGKNIPLTILVISDRDWLLGDPSRA 662

Query: 607 DKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQ 666
           DKQSAYSLLLAE+ICNKLGVKV NL +EIVDSKLGKQI   KPSLT+IAAEE+MSLVTAQ
Sbjct: 663 DKQSAYSLLLAESICNKLGVKVHNLASEIVDSKLGKQITGLKPSLTFIAAEEVMSLVTAQ 722

Query: 667 VVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDN 726
           V EN+ELNEVWKDIL+A+GDEIYVKD+ LYMKEGENPSF ELSERA LRREVAIGY+K  
Sbjct: 723 VAENSELNEVWKDILDADGDEIYVKDVELYMKEGENPSFTELSERAWLRREVAIGYIKGG 782

Query: 727 KKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL 761
           KK+INPVPK+EPLSL + DSLIVISELEG+QPI L
Sbjct: 783 KKMINPVPKNEPLSLEMDDSLIVISELEGDQPITL 817

Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZM7|POLL1_ARATH Putative ion channel POLLUX-like 1 OS=Arabidopsis thaliana GN=At5g02940 PE=2 SV=1 Back     alignment and function description
>sp|Q75LD5|CASTO_ORYSJ Probable ion channel CASTOR OS=Oryza sativa subsp. japonica GN=Os03g0843600 PE=2 SV=1 Back     alignment and function description
>sp|Q5H8A6|CASTO_LOTJA Ion channel CASTOR OS=Lotus japonicus GN=CASTOR PE=1 SV=1 Back     alignment and function description
>sp|Q5N941|POLLU_ORYSJ Probable ion channel POLLUX OS=Oryza sativa subsp. japonica GN=Os01g0870100 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTX4|POLLU_ARATH Probable ion channel POLLUX OS=Arabidopsis thaliana GN=At5g49960 PE=2 SV=1 Back     alignment and function description
>sp|Q6RHR6|DMI1_MEDTR Ion channel DMI1 OS=Medicago truncatula GN=DMI1 PE=2 SV=1 Back     alignment and function description
>sp|Q4VY51|SYM8_PEA Probable ion channel SYM8 OS=Pisum sativum GN=SYM8 PE=1 SV=3 Back     alignment and function description
>sp|Q5H8A5|POLLU_LOTJA Ion channel POLLUX OS=Lotus japonicus GN=POLLUX PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query761
297737151846 unnamed protein product [Vitis vinifera] 0.996 0.895 0.791 0.0
225432882729 PREDICTED: ion channel CASTOR-like [Viti 0.956 0.998 0.798 0.0
255551967787 conserved hypothetical protein [Ricinus 0.955 0.923 0.798 0.0
224111074751 predicted protein [Populus trichocarpa] 0.967 0.980 0.764 0.0
356574781850 PREDICTED: ion channel CASTOR-like [Glyc 0.992 0.888 0.757 0.0
356533739788 PREDICTED: probable ion channel CASTOR-l 0.988 0.954 0.732 0.0
449433285 907 PREDICTED: putative ion channel POLLUX-l 0.988 0.829 0.722 0.0
449514845 902 PREDICTED: putative ion channel POLLUX-l 0.984 0.830 0.724 0.0
18422366817 uncharacterized protein [Arabidopsis tha 0.964 0.898 0.711 0.0
297790330808 hypothetical protein ARALYDRAFT_333107 [ 0.955 0.899 0.683 0.0
>gi|297737151|emb|CBI26352.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1258 bits (3254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 602/761 (79%), Positives = 683/761 (89%), Gaps = 3/761 (0%)

Query: 2   QGYQAQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNK 61
           QGY A+LMIGS +SYFL RLTQ+   N  +K++Q+L  S+V T G    PFACMSNSLNK
Sbjct: 88  QGYDAKLMIGS-TSYFLLRLTQLYSANRLMKMVQNLL-SVVCTFGNGSLPFACMSNSLNK 145

Query: 62  PMPLKLDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKF 121
           P PL+LDVSLPSLQD++WN +RL+YLFN++LERNVAT  VVL V CFSFVV GG L FKF
Sbjct: 146 PTPLRLDVSLPSLQDIKWNFSRLIYLFNIRLERNVATSFVVLLVACFSFVVIGGLLLFKF 205

Query: 122 RDETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRN 181
           RD TQSLEDC WEAWACLISSSTHLKQRT + RVIGF+LAIWGILFYSRLLSTMTEQFRN
Sbjct: 206 RDNTQSLEDCFWEAWACLISSSTHLKQRTHIGRVIGFVLAIWGILFYSRLLSTMTEQFRN 265

Query: 182 NMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSD 241
           NMQKLREGAQMQV+E+DHI++CG+NSHL+FILKQLNKYHEF+VRLGTATAR+QRILLLSD
Sbjct: 266 NMQKLREGAQMQVMEADHIVICGINSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSD 325

Query: 242 LPRKQMDKLAENIAKDLNHIDILSKSCS-LTLTKSYERAAANKARAIIILPTKGDRYEVD 300
           LPRKQMDKLA+NIAKDL+HID+L+KSCS L+LTKS+ERAAA+KARAIIILP  GDRYEVD
Sbjct: 326 LPRKQMDKLADNIAKDLSHIDVLTKSCSSLSLTKSFERAAADKARAIIILPANGDRYEVD 385

Query: 301 TDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQK 360
           TDAFLSVLALQPI KM SVPTIVEV+N  T ELLKS+SGLKVEPVENVASKL VQCSRQK
Sbjct: 386 TDAFLSVLALQPISKMTSVPTIVEVTNSQTAELLKSISGLKVEPVENVASKLLVQCSRQK 445

Query: 361 GLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDET 420
           GLIKIY+HLLNYRKN+FNL+SFPNLAGIKYRQLRRGF+ AVVCGLYRNGKIYFHPNDDE 
Sbjct: 446 GLIKIYKHLLNYRKNVFNLFSFPNLAGIKYRQLRRGFEGAVVCGLYRNGKIYFHPNDDEV 505

Query: 421 LQPTDKILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELI 480
           L+ TDK+LF+ P+ GK++P+LA  +V    N  Q+L+VLE N  ++ YA++L+  R+E I
Sbjct: 506 LRQTDKVLFVGPVPGKREPQLAYPDVKEETNTIQNLEVLEKNGGASHYALDLIKMRVENI 565

Query: 481 AKRPSKPGSKATDGNLGPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRK 540
            KRP+KPGSKA+D +LGPKER+LL+GWR DVVEMIEEYDNYLGPGSVLEILSDVPLDDR 
Sbjct: 566 VKRPTKPGSKASDWSLGPKERVLLIGWRQDVVEMIEEYDNYLGPGSVLEILSDVPLDDRN 625

Query: 541 RASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLL 600
           RASN  GHGK+KN+QV H++GNP+N++TL++TI+NI++SFK GE +PLSIVVISDRE LL
Sbjct: 626 RASNFAGHGKVKNIQVSHRVGNPMNYDTLRETILNIRSSFKKGESVPLSIVVISDRECLL 685

Query: 601 GDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIM 660
           GDPSRADK SAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQI R +PSLTYIAAEE+M
Sbjct: 686 GDPSRADKHSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQITRIRPSLTYIAAEEVM 745

Query: 661 SLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAI 720
            LVTAQV EN+ELNEVWKDILNAEGDEIYVKDI LYMK GENPSF EL+ERAHLR+EVAI
Sbjct: 746 GLVTAQVAENSELNEVWKDILNAEGDEIYVKDIRLYMKPGENPSFSELAERAHLRQEVAI 805

Query: 721 GYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL 761
           GYVK+NKKVINP+PKSEPLSL +TDSLIVISELEG QPIV+
Sbjct: 806 GYVKNNKKVINPIPKSEPLSLEMTDSLIVISELEGAQPIVM 846

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432882|ref|XP_002280086.1| PREDICTED: ion channel CASTOR-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255551967|ref|XP_002517028.1| conserved hypothetical protein [Ricinus communis] gi|223543663|gb|EEF45191.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224111074|ref|XP_002315738.1| predicted protein [Populus trichocarpa] gi|222864778|gb|EEF01909.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356574781|ref|XP_003555523.1| PREDICTED: ion channel CASTOR-like [Glycine max] Back     alignment and taxonomy information
>gi|356533739|ref|XP_003535417.1| PREDICTED: probable ion channel CASTOR-like [Glycine max] Back     alignment and taxonomy information
>gi|449433285|ref|XP_004134428.1| PREDICTED: putative ion channel POLLUX-like 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449514845|ref|XP_004164496.1| PREDICTED: putative ion channel POLLUX-like 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18422366|ref|NP_568628.1| uncharacterized protein [Arabidopsis thaliana] gi|75163971|sp|Q940Y9.1|POLL2_ARATH RecName: Full=Putative ion channel POLLUX-like 2 gi|15450498|gb|AAK96542.1| AT5g02940/F9G14_250 [Arabidopsis thaliana] gi|16974323|gb|AAL31146.1| AT5g02940/F9G14_250 [Arabidopsis thaliana] gi|332007621|gb|AED95004.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297790330|ref|XP_002863063.1| hypothetical protein ARALYDRAFT_333107 [Arabidopsis lyrata subsp. lyrata] gi|297308871|gb|EFH39322.1| hypothetical protein ARALYDRAFT_333107 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query761
TAIR|locus:505006671817 AT5G43745 [Arabidopsis thalian 0.964 0.898 0.666 3.3e-260
TAIR|locus:2151276813 AT5G02940 [Arabidopsis thalian 0.961 0.900 0.623 4e-241
TAIR|locus:2158799824 AT5G49960 [Arabidopsis thalian 0.387 0.358 0.233 4.9e-32
UNIPROTKB|Q4VY51894 SYM8 "Probable ion channel SYM 0.388 0.331 0.222 5.3e-31
TAIR|locus:505006671 AT5G43745 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2504 (886.5 bits), Expect = 3.3e-260, P = 3.3e-260
 Identities = 503/755 (66%), Positives = 582/755 (77%)

Query:     7 QLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLK 66
             +++IG +  Y +FR+ Q        KI Q+L P +V      G PFAC SNSL  P PLK
Sbjct:    84 KVVIGCIPLYAVFRIAQ--------KICQEL-PRLVQNSVGAGLPFACASNSL--PTPLK 132

Query:    67 LDVSLPSLQDVRWNLARLLYLFNVQLERNVATXXXXXXXXXXXXXXXXXXXXXXXRDETQ 126
             LDVS PS QD+RW LAR LYLFN+QLE+N+ T                       R +  
Sbjct:   133 LDVSFPSFQDIRWGLARFLYLFNIQLEKNIGTFLVALMIACVSFVIIGGLLFFKFRKDLP 192

Query:   127 SLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKL 186
              LEDCLWEAWACLISSSTHLKQ+TR+ERVIGF+LAIWGILFYSRLLSTMTEQFR NM KL
Sbjct:   193 -LEDCLWEAWACLISSSTHLKQKTRIERVIGFVLAIWGILFYSRLLSTMTEQFRYNMTKL 251

Query:   187 REGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQ 246
             REGAQMQVLE+DHII+CG+NSHL FILKQLN YHE +VRLGTATARKQR+LL+SD PRKQ
Sbjct:   252 REGAQMQVLEADHIIICGINSHLPFILKQLNSYHEHAVRLGTATARKQRLLLMSDTPRKQ 311

Query:   247 MDKLAENIAKDLNHIDIXXXXXXXXXXXXYEXXXXXXXXXXXXLPTKGDRYEVDTDAFLS 306
             MDKLAE  +KD NHIDI            +E            LPTKGDRYEVDTDAFLS
Sbjct:   312 MDKLAEAYSKDFNHIDILTKSCSLNLTKSFERAAASMARAIIILPTKGDRYEVDTDAFLS 371

Query:   307 VLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIY 366
             VLALQPI KM S+PTIVEVS+PNT +LLKS+SGLKVEPVENV SKLFVQCSRQK LIKIY
Sbjct:   372 VLALQPIQKMESIPTIVEVSSPNTYDLLKSISGLKVEPVENVTSKLFVQCSRQKDLIKIY 431

Query:   367 RHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDK 426
             RHLLNY KN+FNL SFPNL G KYRQLR GFQE VVCGL R+GK+ FHPND+E L  TDK
Sbjct:   432 RHLLNYSKNVFNLCSFPNLVGTKYRQLRLGFQEVVVCGLLRDGKVNFHPNDNEELMETDK 491

Query:   427 ILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSK 486
             +LFIAP++ KKK  L +      M + +++ V    +D+     E   +RL  I  RP K
Sbjct:   492 LLFIAPLNWKKKQLLYTD-----MKL-ENITV---PTDTRKQVFEKKRSRLSKIIMRPRK 542

Query:   487 PGSKATDGNLGPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAI 546
               SK +D   GP E ILLLGWR DVV+MIEE+DNYLGPGS +EILSDV L+DR+R  ++I
Sbjct:   543 SLSKGSDSVKGPTESILLLGWRGDVVQMIEEFDNYLGPGSSMEILSDVSLEDRRRVGDSI 602

Query:   547 GHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRA 606
             G  K+KN+QV HK+GNPLN++TLK TIM +++ ++ G+ +PL+I+VISDR+WLLGDPSRA
Sbjct:   603 GSVKIKNIQVSHKVGNPLNYDTLKQTIMRMKSKYRKGKNIPLTILVISDRDWLLGDPSRA 662

Query:   607 DKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQ 666
             DKQSAYSLLLAE+ICNKLGVKV NL +EIVDSKLGKQI   KPSLT+IAAEE+MSLVTAQ
Sbjct:   663 DKQSAYSLLLAESICNKLGVKVHNLASEIVDSKLGKQITGLKPSLTFIAAEEVMSLVTAQ 722

Query:   667 VVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDN 726
             V EN+ELNEVWKDIL+A+GDEIYVKD+ LYMKEGENPSF ELSERA LRREVAIGY+K  
Sbjct:   723 VAENSELNEVWKDILDADGDEIYVKDVELYMKEGENPSFTELSERAWLRREVAIGYIKGG 782

Query:   727 KKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL 761
             KK+INPVPK+EPLSL + DSLIVISELEG+QPI L
Sbjct:   783 KKMINPVPKNEPLSLEMDDSLIVISELEGDQPITL 817
GO:0005634 "nucleus" evidence=ISM
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2151276 AT5G02940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158799 AT5G49960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q4VY51 SYM8 "Probable ion channel SYM8" [Pisum sativum (taxid:3888)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q940Y9POLL2_ARATHNo assigned EC number0.71120.96450.8984yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query761
pfam06241208 pfam06241, DUF1012, Protein of unknown function (D 2e-88
>gnl|CDD|114933 pfam06241, DUF1012, Protein of unknown function (DUF1012) Back     alignment and domain information 
 Score =  276 bits (708), Expect = 2e-88
 Identities = 139/215 (64%), Positives = 159/215 (73%), Gaps = 7/215 (3%)

Query: 284 ARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVE 343
           ARAIIILPTKGDRYEVDTDAFLSVLAL+PI KM S+PTIVEVS+PN  +LLKS+SGLKVE
Sbjct: 1   ARAIIILPTKGDRYEVDTDAFLSVLALEPIQKMESIPTIVEVSSPNMYDLLKSISGLKVE 60

Query: 344 PVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVC 403
           PVEN  SKLFVQCSRQK LIKIYRHLLNY KN+FNL SFPNL G+KYRQLR GFQE VVC
Sbjct: 61  PVENSTSKLFVQCSRQKDLIKIYRHLLNYSKNVFNLCSFPNLTGMKYRQLRLGFQEVVVC 120

Query: 404 GLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNS 463
           G+ R+GK+ FHPNDDE L  TDK+LFIAP++ KKK  L +      + +       +   
Sbjct: 121 GILRDGKVNFHPNDDEELMETDKLLFIAPLNWKKKDFLYTDMKLENITV-------DETD 173

Query: 464 DSTSYAIELVNARLELIAKRPSKPGSKATDGNLGP 498
           D+     E   +RLE I  RP K  SK +D   GP
Sbjct: 174 DTRKQVFEEKKSRLEKIIMRPRKSLSKGSDSFKGP 208

Family of uncharacterized proteins found in both eukaryotes and bacteria. Length = 208

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 761
PRK09496453 trkA potassium transporter peripheral membrane com 100.0
PF06241206 DUF1012: Protein of unknown function (DUF1012); In 100.0
KOG14201103 consensus Ca2+-activated K+ channel Slowpoke, alph 99.96
PRK10537393 voltage-gated potassium channel; Provisional 99.95
COG0569225 TrkA K+ transport systems, NAD-binding component [ 99.84
PRK09496453 trkA potassium transporter peripheral membrane com 99.82
KOG3193 1087 consensus K+ channel subunit [Inorganic ion transp 99.68
PRK10669558 putative cation:proton antiport protein; Provision 99.62
PF06241206 DUF1012: Protein of unknown function (DUF1012); In 99.6
COG0569225 TrkA K+ transport systems, NAD-binding component [ 99.53
PRK03659601 glutathione-regulated potassium-efflux system prot 99.51
PRK03562621 glutathione-regulated potassium-efflux system prot 99.46
PF02254116 TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg 99.45
PRK10537393 voltage-gated potassium channel; Provisional 99.33
PF02254116 TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg 99.12
PRK10669558 putative cation:proton antiport protein; Provision 98.98
PRK03659601 glutathione-regulated potassium-efflux system prot 98.83
PRK03562621 glutathione-regulated potassium-efflux system prot 98.78
COG0490162 Putative regulatory, ligand-binding protein relate 98.62
COG1226212 Kch Kef-type K+ transport systems, predicted NAD-b 98.54
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 98.39
KOG3713477 consensus Voltage-gated K+ channel KCNB/KCNC [Inor 98.25
PF0208071 TrkA_C: TrkA-C domain; InterPro: IPR006037 The reg 98.03
KOG3193 1087 consensus K+ channel subunit [Inorganic ion transp 97.99
KOG1419654 consensus Voltage-gated K+ channel KCNQ [Inorganic 97.91
PF03493101 BK_channel_a: Calcium-activated BK potassium chann 97.81
KOG1545507 consensus Voltage-gated shaker-like K+ channel KCN 97.73
KOG1420 1103 consensus Ca2+-activated K+ channel Slowpoke, alph 97.73
PLN03192823 Voltage-dependent potassium channel; Provisional 97.65
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 97.57
COG3273204 Uncharacterized conserved protein [Function unknow 97.55
COG1226212 Kch Kef-type K+ transport systems, predicted NAD-b 97.36
COG3400471 Uncharacterized protein conserved in bacteria [Fun 97.31
COG0490162 Putative regulatory, ligand-binding protein relate 97.24
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 96.87
KOG0498727 consensus K+-channel ERG and related proteins, con 96.7
TIGR03802562 Asp_Ala_antiprt aspartate-alanine antiporter. All 95.67
KOG4390632 consensus Voltage-gated A-type K+ channel KCND [In 95.61
PRK05326562 potassium/proton antiporter; Reviewed 95.5
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 95.49
PF0208071 TrkA_C: TrkA-C domain; InterPro: IPR006037 The reg 95.27
COG3400 471 Uncharacterized protein conserved in bacteria [Fun 95.09
PRK03818552 putative transporter; Validated 94.94
KOG3684489 consensus Ca2+-activated K+ channel proteins (inte 94.79
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 94.77
PRK03818552 putative transporter; Validated 94.73
KOG0499815 consensus Cyclic nucleotide-gated cation channel C 94.64
TIGR03802562 Asp_Ala_antiprt aspartate-alanine antiporter. All 94.63
PRK04972558 putative transporter; Provisional 94.56
KOG0501971 consensus K+-channel KCNQ [Inorganic ion transport 94.34
PRK04972558 putative transporter; Provisional 93.21
COG3263574 NhaP-type Na+/H+ and K+/H+ antiporters with a uniq 91.68
COG3273204 Uncharacterized conserved protein [Function unknow 91.59
PRK06719157 precorrin-2 dehydrogenase; Validated 91.46
PRK06719157 precorrin-2 dehydrogenase; Validated 91.15
KOG0500536 consensus Cyclic nucleotide-gated cation channel C 90.45
KOG3827400 consensus Inward rectifier K+ channel [Inorganic i 88.81
PF00520200 Ion_trans: Ion transport protein calcium channel s 87.66
TIGR01470205 cysG_Nterm siroheme synthase, N-terminal domain. T 85.89
PRK06718202 precorrin-2 dehydrogenase; Reviewed 85.2
COG1748389 LYS9 Saccharopine dehydrogenase and related protei 84.34
PF03435386 Saccharop_dh: Saccharopine dehydrogenase ; InterPr 83.34
cd05211217 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of 81.95
TIGR01470205 cysG_Nterm siroheme synthase, N-terminal domain. T 81.66
KOG10531258 consensus Glutamate-gated NMDA-type ion channel re 80.03
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=3.3e-34  Score=326.11  Aligned_cols=425  Identities=15%  Similarity=0.213  Sum_probs=316.0

Q ss_pred             eEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHh
Q 004328          199 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER  278 (761)
Q Consensus       199 HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~r  278 (761)
                      |++|||+|..|..++++|...+.             .++++ +.+++..+.+.+..     +  +.++.||+++.++|++
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~-------------~v~vi-d~~~~~~~~~~~~~-----~--~~~~~gd~~~~~~l~~   60 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENN-------------DVTVI-DTDEERLRRLQDRL-----D--VRTVVGNGSSPDVLRE   60 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-------------cEEEE-ECCHHHHHHHHhhc-----C--EEEEEeCCCCHHHHHH
Confidence            89999999999999999987654             46666 77777777654311     2  3345799999999999


Q ss_pred             ccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCc---HHHH--hhcCCCeEEEchhhHHHHH
Q 004328          279 AAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNT---CELL--KSLSGLKVEPVENVASKLF  353 (761)
Q Consensus       279 a~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~---~~~l--~~~g~d~Vi~~~~~~~~ll  353 (761)
                      +++++|+.+|+++++      |..++.+++.++.+.  +..++|+++.++++   .+++  +.+|++.|++|+.++++.+
T Consensus        61 ~~~~~a~~vi~~~~~------~~~n~~~~~~~r~~~--~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi~p~~~~a~~l  132 (453)
T PRK09496         61 AGAEDADLLIAVTDS------DETNMVACQIAKSLF--GAPTTIARVRNPEYAEYDKLFSKEALGIDLLISPELLVAREI  132 (453)
T ss_pred             cCCCcCCEEEEecCC------hHHHHHHHHHHHHhc--CCCeEEEEECCccccchhhhhhhhcCCccEEECHHHHHHHHH
Confidence            999999988776642      233444555566654  46678999988877   2334  7789999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHhcccC-----CeEEEeeCCCCCCCCHHHHHhh-cC-CeEEEEEEECCeEEecCCCCCcccCCCE
Q 004328          354 VQCSRQKGLIKIYRHLLNYRK-----NIFNLWSFPNLAGIKYRQLRRG-FQ-EAVVCGLYRNGKIYFHPNDDETLQPTDK  426 (761)
Q Consensus       354 a~~~~~Pg~~~v~~~Ll~~~~-----~ei~v~~~~~l~G~t~~e~~~~-~~-~~iviGI~r~G~~~lnP~~d~~I~~gD~  426 (761)
                      ++.+..|+..++    +.+.+     .|+.+.+.+++.|+++.|+..+ .+ ++.++|+.|+|+. +.|++++.|++||+
T Consensus       133 ~~~l~~~~~~~~----~~~~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~r~~~~-~~p~~~~~l~~gD~  207 (453)
T PRK09496        133 ARLIEYPGALDV----EEFADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVAIFRGGRL-IIPRGDTVIEAGDE  207 (453)
T ss_pred             HHHhcCCCceEe----eeecCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEEEEECCEE-EcCCCCcEecCCCE
Confidence            999999998664    33333     3455556678999999999876 44 7899999999984 58999999999999


Q ss_pred             EEEEecCCCCCCcccccccccccccccchhhhcccCCCChhHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCeEEEEe
Q 004328          427 ILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLGPKERILLLG  506 (761)
Q Consensus       427 Livia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLI~G  506 (761)
                      |+++++.+++.+             +                    .    ... +.+           ....+|++|||
T Consensus       208 l~v~g~~~~l~~-------------~--------------------~----~~~-~~~-----------~~~~~~iiIiG  238 (453)
T PRK09496        208 VYFIGAREHIRA-------------V--------------------M----SEF-GRL-----------EKPVKRVMIVG  238 (453)
T ss_pred             EEEEeCHHHHHH-------------H--------------------H----HHh-Ccc-----------CCCCCEEEEEC
Confidence            999999864422             1                    0    011 111           12469999999


Q ss_pred             eccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCCCccceEEEEEECCCCCHHhHHhhhhhccccccCCCCC
Q 004328          507 WRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEEL  586 (761)
Q Consensus       507 w~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~~~~~~~V~~i~GD~t~~~~L~~a~i~~~~a~~~d~~~  586 (761)
                      ||+.+..+++.|.+   .|..+++++..  +++.+.+.    ....+  +.++.||+++.++|++++++     +++   
T Consensus       239 ~G~~g~~l~~~L~~---~~~~v~vid~~--~~~~~~~~----~~~~~--~~~i~gd~~~~~~L~~~~~~-----~a~---  299 (453)
T PRK09496        239 GGNIGYYLAKLLEK---EGYSVKLIERD--PERAEELA----EELPN--TLVLHGDGTDQELLEEEGID-----EAD---  299 (453)
T ss_pred             CCHHHHHHHHHHHh---CCCeEEEEECC--HHHHHHHH----HHCCC--CeEEECCCCCHHHHHhcCCc-----cCC---
Confidence            99999999999964   57789999863  34433332    11223  34599999999999999888     344   


Q ss_pred             CcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCCcceEEEEEEeccccchhcccCCcceEEecchhHHHHHHH
Q 004328          587 PLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQ  666 (761)
Q Consensus       587 ~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~iVaEi~~~~~~~~l~~~~~~~~~I~s~~i~s~vlAq  666 (761)
                        .+++++++          |..|+++.+.+|.+    +.  .++|+++.++++.+.++.+|.+ .+|.+..+.+..+++
T Consensus       300 --~vi~~~~~----------~~~n~~~~~~~~~~----~~--~~ii~~~~~~~~~~~~~~~g~~-~vi~p~~~~~~~~~~  360 (453)
T PRK09496        300 --AFIALTND----------DEANILSSLLAKRL----GA--KKVIALVNRPAYVDLVEGLGID-IAISPRQATASEILR  360 (453)
T ss_pred             --EEEECCCC----------cHHHHHHHHHHHHh----CC--CeEEEEECCcchHHHHHhcCCC-EEECHHHHHHHHHHH
Confidence              67777654          47889988888874    43  3899999999999999988854 555666777888999


Q ss_pred             HhhcccHHHHHHHhhC-CCCCeEEEEeccccccCCCCCCHHHHHHHHHhCCeeEEEEEecCeEEECCCCCCCCceecCCC
Q 004328          667 VVENNELNEVWKDILN-AEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTD  745 (761)
Q Consensus       667 ~a~~~~l~~v~~~ll~-~eg~ei~~~~~~~~~~~~~~~sf~~L~~~a~~~~~ilIG~~~~~~~~inP~~~~~~~~~~~gD  745 (761)
                      ....|.+..++....+ .+..|+.+.+.+.+    .+.++.++..   .++..++|+.++++. ++|++   .+++++||
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~----~g~~l~el~l---~~~~~i~~i~r~~~~-~~p~~---~~~l~~gD  429 (453)
T PRK09496        361 HVRRGDIVAVHSLRRGAAEAIEAVAHETSKV----VGKPLKDLKL---PKGVLIGAIVRGGEV-IIPTG---DTVIEPGD  429 (453)
T ss_pred             HhhccchhhhhhhcCCcEEEEEEEeCCCChh----ccCCHHHcCC---CCCCEEEEEEECCEE-EcCCC---CcEECCCC
Confidence            8888887776653222 12335555544544    4667777732   468899999988877 78864   45999999


Q ss_pred             EEEEEecCCC
Q 004328          746 SLIVISELEG  755 (761)
Q Consensus       746 ~lIVi~~~~~  755 (761)
                      .|+++++.+.
T Consensus       430 ~l~v~~~~~~  439 (453)
T PRK09496        430 HVIVFVLDKK  439 (453)
T ss_pred             EEEEEEcCcc
Confidence            9999998776

>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants Back     alignment and domain information
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed Back     alignment and domain information
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants Back     alignment and domain information
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus Back     alignment and domain information
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3273 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter Back     alignment and domain information
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus Back     alignment and domain information
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK03818 putative transporter; Validated Back     alignment and domain information
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK03818 putative transporter; Validated Back     alignment and domain information
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter Back     alignment and domain information
>PRK04972 putative transporter; Provisional Back     alignment and domain information
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK04972 putative transporter; Provisional Back     alignment and domain information
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3273 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK06719 precorrin-2 dehydrogenase; Validated Back     alignment and domain information
>PRK06719 precorrin-2 dehydrogenase; Validated Back     alignment and domain information
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain Back     alignment and domain information
>PRK06718 precorrin-2 dehydrogenase; Reviewed Back     alignment and domain information
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] Back     alignment and domain information
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase Back     alignment and domain information
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase Back     alignment and domain information
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain Back     alignment and domain information
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query761
1lnq_A336 MTHK channels, potassium channel related protein; 5e-24
3naf_A 798 Calcium-activated potassium channel subunit alpha; 5e-17
3mt5_A 726 Potassium large conductance calcium-activated CHA 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
2aef_A234 Calcium-gated potassium channel MTHK; rossmann fol 1e-05
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336 Back     alignment and structure
 Score =  102 bits (257), Expect = 5e-24
 Identities = 60/363 (16%), Positives = 120/363 (33%), Gaps = 51/363 (14%)

Query: 81  LARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLI 140
           +  ++ +    L R +      + ++  + +++G   F     E  S    L+  W   +
Sbjct: 1   MVLVIEIIRKHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEGE--SWTVSLY--WT-FV 55

Query: 141 SSST----HLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLE 196
           + +T         T +       L + GI  ++  +  + E   N  Q    G  + V +
Sbjct: 56  TIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMG-LIDVAK 114

Query: 197 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAK 256
           S H+++CG +      L++L                    +L  D          EN+ K
Sbjct: 115 SRHVVICGWSESTLECLRELRGSE--------------VFVLAED----------ENVRK 150

Query: 257 DLNHIDILSKSCSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKM 316
            +            T     E+A    ARA+I+        E D++    +L ++   K+
Sbjct: 151 KVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDL------ESDSETIHCILGIR---KI 201

Query: 317 N-SVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKN 375
           + SV  I E       E L+     +V     ++ +L  +           + +L     
Sbjct: 202 DESVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEEST 261

Query: 376 IFNLWSFP-----NLAGIKYRQLR-RGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILF 429
              +   P      L G+             ++ G+ R  ++   P  D + +  D IL 
Sbjct: 262 -RRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILG 320

Query: 430 IAP 432
           I  
Sbjct: 321 IGK 323
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens} Length = 798 Back     alignment and structure
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A Length = 726 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A Length = 234 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query761
4gx0_A565 TRKA domain protein; membrane protein, ION channel 100.0
3naf_A798 Calcium-activated potassium channel subunit alpha; 100.0
4g65_A461 TRK system potassium uptake protein TRKA; structur 100.0
3mt5_A726 Potassium large conductance calcium-activated CHA 100.0
4hpf_A722 Potassium channel subfamily U member 1; PH-gated, 100.0
1lnq_A336 MTHK channels, potassium channel related protein; 100.0
2aef_A234 Calcium-gated potassium channel MTHK; rossmann fol 99.89
3naf_A 798 Calcium-activated potassium channel subunit alpha; 99.87
3mt5_A 726 Potassium large conductance calcium-activated CHA 99.87
3l4b_C218 TRKA K+ channel protien TM1088B; potassium channel 99.85
4gx0_A565 TRKA domain protein; membrane protein, ION channel 99.82
4hpf_A 722 Potassium channel subfamily U member 1; PH-gated, 99.78
4g65_A461 TRK system potassium uptake protein TRKA; structur 99.7
1lnq_A336 MTHK channels, potassium channel related protein; 99.7
2aef_A234 Calcium-gated potassium channel MTHK; rossmann fol 99.7
3fwz_A140 Inner membrane protein YBAL; TRKA-N domain, E.coli 99.57
1id1_A153 Putative potassium channel protein; RCK domain, E. 99.51
3l4b_C218 TRKA K+ channel protien TM1088B; potassium channel 99.51
3l9w_A413 Glutathione-regulated potassium-efflux system Pro 99.36
3llv_A141 Exopolyphosphatase-related protein; NAD(P)-binding 99.34
3fwz_A140 Inner membrane protein YBAL; TRKA-N domain, E.coli 99.16
1id1_A153 Putative potassium channel protein; RCK domain, E. 99.13
3c85_A183 Putative glutathione-regulated potassium-efflux S 99.1
1p7b_A333 Integral membrane channel and cytosolic domains; t 99.01
1lss_A140 TRK system potassium uptake protein TRKA homolog; 98.97
3l9w_A 413 Glutathione-regulated potassium-efflux system Pro 98.87
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 98.84
1xl4_A301 Inward rectifier potassium channel; integral membr 98.82
2a9h_A155 Voltage-gated potassium channel; potassium channel 98.81
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 98.8
3llv_A141 Exopolyphosphatase-related protein; NAD(P)-binding 98.79
2g1u_A155 Hypothetical protein TM1088A; structural genomics, 98.78
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 98.78
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 98.78
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 98.77
2q67_A114 Potassium channel protein; inverted teepee, helix 98.75
3ouf_A97 Potassium channel protein; ION channel, membrane, 98.74
2hmt_A144 YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane 98.73
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 98.69
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 98.64
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 98.64
1vct_A205 Hypothetical protein PH0236; helix rich, structura 98.41
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 98.41
3c85_A183 Putative glutathione-regulated potassium-efflux S 98.29
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 98.28
2g1u_A155 Hypothetical protein TM1088A; structural genomics, 98.28
3um7_A309 Potassium channel subfamily K member 4; potassium 98.25
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 98.24
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.18
3sya_A340 G protein-activated inward rectifier potassium CH; 98.17
3jxo_A86 TRKA-N domain protein; TRKA K+ channel component, 98.13
1lss_A140 TRK system potassium uptake protein TRKA homolog; 98.08
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.08
2hmt_A144 YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane 97.96
3ukm_A280 Potassium channel subfamily K member 1; membrane p 97.78
3um7_A309 Potassium channel subfamily K member 4; potassium 97.56
3rvy_A285 ION transport protein; tetrameric ION channel, vol 97.32
1vct_A205 Hypothetical protein PH0236; helix rich, structura 96.34
3jxo_A86 TRKA-N domain protein; TRKA K+ channel component, 93.56
3ic5_A118 Putative saccharopine dehydrogenase; structural ge 91.93
3dfz_A223 SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase 90.61
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 90.35
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
Probab=100.00  E-value=9.3e-55  Score=506.40  Aligned_cols=529  Identities=14%  Similarity=0.176  Sum_probs=282.7

Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhee----eccCCCChhHHHHHhhheeeeccccccc---CCcchhhHH
Q 004328           85 LYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFK----FRDETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIG  157 (761)
Q Consensus        85 ~y~~~~~l~~~~~~~~~~ll~~~~~iv~~g~~~~~~----~e~~~~s~~da~w~~~~~~t~~g~g~~d---~t~~~rl~~  157 (761)
                      .|.|.+...++... +.++++++++++++++++|++    +|+..++|+|||||+++|+||.  ||||   .|+.||+++
T Consensus         6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTv--Gygd~~p~~~~~~~~~   82 (565)
T 4gx0_A            6 AYFLRGRARQNLKV-LLLYCAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTL--GFGDITFESDAGYLFA   82 (565)
T ss_dssp             ---------CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTC--CCCSSCCCSHHHHHHH
T ss_pred             ceeeechhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeee--cCCCcCCCCccHHHHH
Confidence            34444443333333 333344444555566565554    5666799999999887777554  5555   667899999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHH----ccccccccCCCeEEEEccCccHHHHHHHHHhccccccccccccc
Q 004328          158 FILAIWGILFYSRLLST-MTEQFRN-NMQKLR----EGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATA  231 (761)
Q Consensus       158 ~~l~l~Gi~~fa~li~~-i~~~l~~-~~~~lr----~G~~~~v~~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~  231 (761)
                      ++++++|+++|++.++. +++.+.. .+++..    .++ .....++|+||||||+.|..++++|.+.+.          
T Consensus        83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~hviI~G~g~~g~~la~~L~~~~~----------  151 (565)
T 4gx0_A           83 SIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIE-LPDDTRGHILIFGIDPITRTLIRKLESRNH----------  151 (565)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCC-CCTTCCSCEEEESCCHHHHHHHHHTTTTTC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cccccCCeEEEECCChHHHHHHHHHHHCCC----------
Confidence            99999999999988876 5544433 222221    122 223469999999999999999999987655          


Q ss_pred             CcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHHHHhccccccCeEEEecCCCCCccchHHHHHHHHhcC
Q 004328          232 RKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQ  311 (761)
Q Consensus       232 ~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~L~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~  311 (761)
                         ++|++ |.+++.++++.+.       .++.++.||++++++|++|++++|+++|+ +. +     |..++.++++++
T Consensus       152 ---~vvvi-d~~~~~~~~~~~~-------~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~-~-----D~~n~~~~~~ar  213 (565)
T 4gx0_A          152 ---LFVVV-TDNYDQALHLEEQ-------EGFKVVYGSPTDAHVLAGLRVAAARSIIA-NL-S-----DPDNANLCLTVR  213 (565)
T ss_dssp             ---CEEEE-ESCHHHHHHHHHS-------CSSEEEESCTTCHHHHHHTTGGGCSEEEE-CS-C-----HHHHHHHHHHHH
T ss_pred             ---CEEEE-ECCHHHHHHHHHh-------cCCeEEEeCCCCHHHHHhcCcccCCEEEE-eC-C-----cHHHHHHHHHHH
Confidence               46666 7888888776542       13445689999999999999999998876 32 2     455566777888


Q ss_pred             CCCCCCCCCEEEEEeCcCcHHHHhhcCCCeEEEchhhHHHHHHHHHhcCCHH-HHHHHHhcccCCeEEEeeCCCCCCCCH
Q 004328          312 PIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLI-KIYRHLLNYRKNIFNLWSFPNLAGIKY  390 (761)
Q Consensus       312 ~~~~~~~~~iIa~v~d~~~~~~l~~~g~d~Vi~~~~~~~~lla~~~~~Pg~~-~v~~~Ll~~~~~ei~v~~~~~l~G~t~  390 (761)
                      +++   +.++||+++++++.+.++.+|+|.|++++...++.|++.+..|+.. +++..--.+.-.|+.+. .++++|+++
T Consensus       214 ~~~---~~~iiar~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~p~~~~~~~~~~~~~~l~e~~v~-~s~l~G~~l  289 (565)
T 4gx0_A          214 SLC---QTPIIAVVKEPVHGELLRLAGANQVVPLTRILGRYLGIRATTCGALAHILDSFGNLQIAELPVH-GTPFAGKTI  289 (565)
T ss_dssp             TTC---CCCEEEECSSGGGHHHHHHHTCSEEECHHHHHHHHHHHHHHC--------------------------------
T ss_pred             Hhc---CceEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcccccccchhcccCCceEEEEEEC-CCccCCCCH
Confidence            766   6789999999999999999999999999999999999999999985 33321111222577777 789999999


Q ss_pred             HHHHhhcC-CeEEEEEEECCeEEecCCCCCcccCCCEEEEEecCCCCCCcccccccccccccccchhhhcccCCCChhHH
Q 004328          391 RQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYA  469 (761)
Q Consensus       391 ~e~~~~~~-~~iviGI~r~G~~~lnP~~d~~I~~gD~Livia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (761)
                      +|+..+.+ ++.++||+|+|+.. +|+++++|++||.|+++|+.+++.+-.                             
T Consensus       290 ~el~~~~~~~~~vi~i~r~g~~~-~p~~~~~l~~GD~L~v~g~~~~l~~~~-----------------------------  339 (565)
T 4gx0_A          290 GESGIRQRTGLSIIGVWERGSLT-TPQRETVLTEQSLLVLAGTKSQLAALE-----------------------------  339 (565)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHcCcchhcCCEEEEEEECCEEe-CCCCCcEeCCCCEEEEEeCHHHHHHHH-----------------------------
Confidence            99976544 69999999999977 999999999999999999987664310                             


Q ss_pred             HHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCeEEEEeeccCHHHHHHHHhhhcCCCCEEEEEeCCChhHHHhhhhccCCC
Q 004328          470 IELVNARLELIAKRPSKPGSKATDGNLGPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHG  549 (761)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLI~Gw~~~~~~li~eL~~~~~~gs~v~ii~~~p~~er~~~l~~~~~~  549 (761)
                              +.. +..           ... +|++|||||+.+..++++|.+   .|..+++++.  ++++++        
T Consensus       340 --------~~~-~~~-----------~~~-~~viIiG~G~~G~~la~~L~~---~g~~v~vid~--d~~~~~--------  385 (565)
T 4gx0_A          340 --------YLI-GEA-----------PED-ELIFIIGHGRIGCAAAAFLDR---KPVPFILIDR--QESPVC--------  385 (565)
T ss_dssp             ---------------------------CC-CCEEEECCSHHHHHHHHHHHH---TTCCEEEEES--SCCSSC--------
T ss_pred             --------HHh-cCC-----------CCC-CCEEEECCCHHHHHHHHHHHH---CCCCEEEEEC--ChHHHh--------
Confidence                    000 111           113 999999999999999999975   4778999997  334432        


Q ss_pred             CccceEEEEEECCCCCHHhHHhhhhhccccccCCCCCCcEEEEEecCCccCCCcchhhHHHHHHHHHHHHHHhHhCCCcc
Q 004328          550 KLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQ  629 (761)
Q Consensus       550 ~~~~~~V~~i~GD~t~~~~L~~a~i~~~~a~~~d~~~~~siviLsd~~~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~  629 (761)
                      .+.    ..++||++|.++|+++|++     ++|     .+|+++++          |+.|+++.+.+|++.++     +
T Consensus       386 ~~~----~~i~gD~t~~~~L~~agi~-----~ad-----~vi~~~~~----------d~~ni~~~~~ak~l~~~-----~  436 (565)
T 4gx0_A          386 NDH----VVVYGDATVGQTLRQAGID-----RAS-----GIIVTTND----------DSTNIFLTLACRHLHSH-----I  436 (565)
T ss_dssp             CSS----CEEESCSSSSTHHHHHTTT-----SCS-----EEEECCSC----------HHHHHHHHHHHHHHCSS-----S
T ss_pred             hcC----CEEEeCCCCHHHHHhcCcc-----ccC-----EEEEECCC----------chHHHHHHHHHHHHCCC-----C
Confidence            221    5599999999999999999     455     78887764          69999999999996554     6


Q ss_pred             eEEEEEEeccccchhcccCCcceEEecchhHHHHHHHHhhcccHHHHHHHhhCCCCCeEEEEe-ccccccCCCCCCHHHH
Q 004328          630 NLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKD-ISLYMKEGENPSFFEL  708 (761)
Q Consensus       630 ~iVaEi~~~~~~~~l~~~~~~~~~I~s~~i~s~vlAq~a~~~~l~~v~~~ll~~eg~ei~~~~-~~~~~~~~~~~sf~~L  708 (761)
                      +||+++.++++.+.++++|++ .+|.+..+.+..+++....+.+..+-      ++.+++..+ .+.+    .+.+..++
T Consensus       437 ~iiar~~~~~~~~~l~~~G~d-~vi~p~~~~~~~i~~~~~~~~~~~~~------~~~~~~~v~~~s~~----~Gk~l~el  505 (565)
T 4gx0_A          437 RIVARANGEENVDQLYAAGAD-FVVSNASVGANILGNLLEHKESAFLS------EGMAVFRRPLPPAM----AGKTIAET  505 (565)
T ss_dssp             EEEEEESSTTSHHHHHHHTCS-EEEEHHHHHHHHHHHHHHCC--------------------------------------
T ss_pred             EEEEEECCHHHHHHHHHcCCC-EEEccchHHHHHHHHHhcchhhhhhh------cCeEEEEEcCCCCc----CCCCHHHc
Confidence            999999999999999999865 78888888899999988777554331      233332222 2333    45677777


Q ss_pred             HHHHHhCCeeEEEEEec--CeEEECCCCCCCCceecCCCEEEEEecCCCCC
Q 004328          709 SERAHLRREVAIGYVKD--NKKVINPVPKSEPLSLTLTDSLIVISELEGEQ  757 (761)
Q Consensus       709 ~~~a~~~~~ilIG~~~~--~~~~inP~~~~~~~~~~~gD~lIVi~~~~~~~  757 (761)
                      ..+ ...|..++|++++  ++..+||.+   ++++++||.|+++++.+.-+
T Consensus       506 ~l~-~~~~~~v~aI~R~~~~~~~~~p~~---~~~l~~GD~liv~g~~~~i~  552 (565)
T 4gx0_A          506 RLR-PLTGCSIVAIEAPDRADILISPPP---ETILAEGARLILIGTSEQEK  552 (565)
T ss_dssp             ---------------------------------------------------
T ss_pred             chh-hhcCCEEEEEEeCCCCceEECcCC---CCEECCCCEEEEEECHHHHH
Confidence            544 2568999999998  888888975   45999999999999887644
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens} Back     alignment and structure
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} Back     alignment and structure
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A Back     alignment and structure
>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens} Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A Back     alignment and structure
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens} Back     alignment and structure
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A Back     alignment and structure
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens} Back     alignment and structure
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A Back     alignment and structure
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Back     alignment and structure
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 Back     alignment and structure
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} Back     alignment and structure
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* Back     alignment and structure
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} Back     alignment and structure
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Back     alignment and structure
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 Back     alignment and structure
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 Back     alignment and structure
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} Back     alignment and structure
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP} Back     alignment and structure
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A Back     alignment and structure
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP} Back     alignment and structure
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Back     alignment and structure
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 761
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 4e-04
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 100 LVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLIS-SSTHLKQRTRVERVIGF 158
              + ++  + +++G   F     E +S    L+  +  + +         T +      
Sbjct: 2   ATRILLLVLAVIIYGTAGFHFI--EGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTV 59

Query: 159 ILAIWGILFYSRLLSTMTE 177
            L + GI  ++  +  + E
Sbjct: 60  TLIVLGIGTFAVAVERLLE 78

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query761
d1id1a_153 Rck domain from putative potassium channel Kch {Es 99.77
d2fy8a1129 Potassium channel-related protein MthK {Archaeon M 99.7
d1id1a_153 Rck domain from putative potassium channel Kch {Es 99.59
d1lssa_132 Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax 99.56
d2fy8a1129 Potassium channel-related protein MthK {Archaeon M 99.54
d2hmva1134 Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} 99.51
d1lssa_132 Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax 99.2
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.05
d2hmva1134 Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} 99.02
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 98.57
d2fy8a292 Potassium channel-related protein MthK, C-terminal 98.52
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 98.44
d1vcta294 Hypothetical protein PH0236, C-terminal domain {Py 98.38
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 98.33
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 97.17
d2fy8a292 Potassium channel-related protein MthK, C-terminal 96.81
d1vcta294 Hypothetical protein PH0236, C-terminal domain {Py 96.41
d1e5qa1182 Saccharopine reductase {Rice blast fungus (Magnapo 91.94
d1gpja2159 Glutamyl tRNA-reductase middle domain {Archaeon Me 89.36
d1hdoa_205 Biliverdin IX beta reductase {Human (Homo sapiens) 88.7
d2p7tc134 Potassium channel protein {Streptomyces lividans [ 87.83
d1hdoa_205 Biliverdin IX beta reductase {Human (Homo sapiens) 87.23
d1pjqa1113 Siroheme synthase CysG, domain 1 {Salmonella typhi 85.7
d1xg5a_257 Putative dehydrogenase ARPG836 (MGC4172) {Human (H 85.07
d1yb1a_244 17-beta-hydroxysteroid dehydrogenase type XI {Huma 83.15
d1pjqa1113 Siroheme synthase CysG, domain 1 {Salmonella typhi 83.1
d1e5qa1182 Saccharopine reductase {Rice blast fungus (Magnapo 82.37
d1k2wa_256 Sorbitol dehydrogenase {Rhodobacter sphaeroides [T 81.54
d2bd0a1240 Bacterial sepiapterin reductase {Chlorobium tepidu 80.63
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.4e-18  Score=164.66  Aligned_cols=143  Identities=18%  Similarity=0.212  Sum_probs=114.8

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhcccccccccccccCcceEEEEeCCChhHHHHHHHhhcccCCCceEEEEeCCCCCHHH
Q 004328          196 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS  275 (761)
Q Consensus       196 ~~~HiII~G~~~~~~~ll~eL~~~~~~~~rlg~~~~~~~~IVVl~d~~~~~~e~l~~~~~~~~~~~~V~~~~Gd~~~~~~  275 (761)
                      .+|||||||||+.|..++++|.+.+.             +++|+ +.+++......+...    ...+.++.||++++++
T Consensus         2 ~knHiII~G~g~~g~~l~~~L~~~~~-------------~v~vI-d~d~~~~~~~~~~~~----~~~~~vi~Gd~~d~~~   63 (153)
T d1id1a_           2 RKDHFIVCGHSILAINTILQLNQRGQ-------------NVTVI-SNLPEDDIKQLEQRL----GDNADVIPGDSNDSSV   63 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-------------CEEEE-ECCCHHHHHHHHHHH----CTTCEEEESCTTSHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-------------CEEEE-eccchhHHHHHHHhh----cCCcEEEEccCcchHH
Confidence            37999999999999999999988655             46666 445443332222211    1224446799999999


Q ss_pred             HHhccccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCCEEEEEeCcCcHHHHhhcCCCeEEEchhhHHHHHHH
Q 004328          276 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQ  355 (761)
Q Consensus       276 L~ra~~~~A~avIIl~~~~d~~e~D~~~l~~vLal~~~~~~~~~~iIa~v~d~~~~~~l~~~g~d~Vi~~~~~~~~lla~  355 (761)
                      |++|++++|+++|+++++      |..++.+++++++++  +..++||++.++++.+.++.+|+|.|++|+.++++.+++
T Consensus        64 L~~a~i~~a~~vi~~~~~------d~~n~~~~~~~r~~~--~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~l~~  135 (153)
T d1id1a_          64 LKKAGIDRCRAILALSDN------DADNAFVVLSAKDMS--SDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILAR  135 (153)
T ss_dssp             HHHHTTTTCSEEEECSSC------HHHHHHHHHHHHHHT--SSSCEEEECSSGGGHHHHHTTCCSEEECHHHHHHHHHHH
T ss_pred             HHHhccccCCEEEEcccc------HHHHHHHHHHHHHhC--CCCceEEEEcCHHHHHHHHHCCCCEEECHHHHHHHHHHH
Confidence            999999999988877642      577788888888876  478999999999999999999999999999999999999


Q ss_pred             HHhcCCHHH
Q 004328          356 CSRQKGLIK  364 (761)
Q Consensus       356 ~~~~Pg~~~  364 (761)
                      .+..|++..
T Consensus       136 ~l~~~~v~~  144 (153)
T d1id1a_         136 VLNGEEINN  144 (153)
T ss_dssp             HHTTCCCCH
T ss_pred             HhCcCCCCH
Confidence            999998854
>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d2fy8a2 d.286.1.1 (A:245-336) Potassium channel-related protein MthK, C-terminal domain {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1vcta2 d.286.1.1 (A:108-201) Hypothetical protein PH0236, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d2fy8a2 d.286.1.1 (A:245-336) Potassium channel-related protein MthK, C-terminal domain {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1vcta2 d.286.1.1 (A:108-201) Hypothetical protein PH0236, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Back     information, alignment and structure
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]} Back     information, alignment and structure
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Back     information, alignment and structure
>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure