Citrus Sinensis ID: 004329

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760

MMDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIELLAKQS

cccccccccCEEEEEEcccccEEEEEEccccEEEEECccccEEEEEcccccccccccccEEccccccEEEEEECcccccccccEEEEECccccEEEEEcccccEEEEEccccccEEEEECcccEEEEEcccccEEEEccccEEEEcccccccEEEEEEcccccEEEECccccEEEEcccccEEEcccccccEEEEEEccccEEEEEcccccEEEEcccccEEEEEEcccccEEEEEECccccEEECcccccEEEEccccEEEEEcccccEEEEEEcccccEEEECccccEEEEEcccccEEcccccccccccccEEEEcccccccEEEEcccccccEEccccccCEEEEEECccEEEEECcccccEEEEccccEEEcccccccccEEccccccEEEEEEccccccCEEccccccccHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHcc

MMDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDF*LNTSFRDPYTGASAY***************TFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLF****KNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIELLAK**

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MMDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLxxxxxxxxxxxxxxxxxxxxxPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIELLAKQS

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Phospholipase A-2-activating protein	Involved in the maintenance of ubiquitin levels.	probable	P54319
Phospholipase A-2-activating protein	Involved in the maintenance of ubiquitin levels.	probable	Q9Y263
Protein DOA1	Participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. May act by preventing the interaction between CDC48 and the E4 enzyme UFD2, leading to prevent multiubiquitination of substrates and subsequent degradation. Essential for maintaining cellular ubiquitin levels.	probable	P36037

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2XZM, chain R
Confidence level:very confident
Coverage over the Query: 55-365
View the alignment between query and template
View the model in PyMOL

Template: 2XZM, chain R
Confidence level:very confident
Coverage over the Query: 8-298
View the alignment between query and template
View the model in PyMOL

Template: 3PST, chain A
Confidence level:very confident
Coverage over the Query: 383-446,483-591,603-753
View the alignment between query and template
View the model in PyMOL

Template: 3EBB, chain A
Confidence level:very confident
Coverage over the Query: 484-757
View the alignment between query and template
View the model in PyMOL