Citrus Sinensis ID: 004329

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760
MMDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIELLAKQS
cccccccccEEEEEEEcccccEEEEEEccccEEEEEEccccEEEEEcccccccccccccEEccccccEEEEEEEcccccccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccEEEEEcccccEEEEccccEEEEcccccccEEEEEEcccccEEEEEccccEEEEcccccEEEcccccccEEEEEEccccEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEEccccEEEEcccccEEEEccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEcccccEEcccccccccccccEEEEcccccccEEEEcccccccEEccccccEEEEEEEEccEEEEEEcccccEEEEccccEEEcccccccccEEccccccEEEEEEccccccEEEccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHcc
ccEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccccccEEEEEEEcccccEEEEEEccccccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEccccEEEEEEcccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEcccccEEEEEccccEEEEEcccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEEccccccccccEEEEccccccEEEEEcccccEEEEccccccEEEEEccccEEEEEcccccEEEEEccccEEEEEccccccEEEEcccccEEEEEEccccccccEccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHcccccHcccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHccccHHHHHHHHHHcHHHHHHHHcHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHcHHHHHccc
MMDIDFKEYqlsselrgheddvrgicvcdnvgiatssrdrtvrfwsldpsdkrkyhsskillghtsfvgplawispneefpegglvsggmDTMVLVWDLgsgekvqtlqghklqvtgvtldnedivsSSVDSTLKRWRKGKLVEfweahnapiqtviripsgeivsgssdttiklwkgkkcaqtfvghtdtvrglsvmpgvgiisASHDCTIRLWALTGQVLMEMVGHTAIVYSIdshasglivsgseDRFAKIwkdgvcvqsiehpgcvwdakflengdivtacsdgvtriwtvhsdkvadSLELEAYASELSQYKLCRKkvgglkledlpglealqipgtnagqtkvvregdngvaysWDMKEQKwdklgevvdgpddgmnrpildgiqydyvfdvdigdgeptrklpynrsdnpydaADKWLlkenlpfsyRQQIVEFILQntgqkdftlntsfrdpytgasayvpgqpssmsaipakptfkhipkkgmliFDAAQFDGILKKIMEFNNALLFDLEkknlsmseLETSRVAAVVKILKDtshyhcssfaDVDISLLLKLLktwppamifpvIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKvssnptlpanLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSScysssnknvqLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIELLAKQS
MMDIDFKEYQLSselrgheddvrgICVCDNvgiatssrdrtvrfwsldpsdkrkyhSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLqvtgvtldnedivsssvdstlkrWRKGKLVefweahnapiqtviripsgeivsGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEAlqipgtnagqtkvvrEGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGeptrklpynrsDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIaeeesievdSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAkasketkiaevgadiellakqs
MMDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVlsaaleiaeeesieVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIELLAKQS
*******************DDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVT*****************WRKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGE****L*Y****NPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAY***************TFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK******HVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGA*********
MMDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVD*********ILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQ******************************************IPKKGMLIFDAAQFDGILKKIMEFNN**************ELETSRVAAVVKIL************DVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEK***NPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSC***SNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGN**************EVGADIELLAK**
MMDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIELLAKQS
MMDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDF*LNTSFRDPYTGASAYVP*************TFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLF****KNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIELLAKQ*
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MMDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLxxxxxxxxxxxxxxxxxxxxxPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIELLAKQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query760 2.2.26 [Sep-21-2011]
P27612794 Phospholipase A-2-activat yes no 0.957 0.916 0.316 1e-107
P54319795 Phospholipase A-2-activat yes no 0.955 0.913 0.313 1e-106
Q9Y263795 Phospholipase A-2-activat yes no 0.946 0.904 0.320 1e-105
Q6GM65799 Phospholipase A-2-activat N/A no 0.965 0.918 0.308 1e-101
O94289718 Ubiquitin homeostasis pro yes no 0.868 0.919 0.315 2e-91
P36037715 Protein DOA1 OS=Saccharom yes no 0.85 0.903 0.317 1e-68
Q8YV571683 Uncharacterized WD repeat no no 0.361 0.163 0.323 5e-27
Q008081356 Vegetative incompatibilit no no 0.369 0.207 0.320 7e-27
Q8YTC21258 Uncharacterized WD repeat no no 0.363 0.219 0.312 2e-26
Q8YRI11526 Uncharacterized WD repeat no no 0.359 0.178 0.312 7e-24
>sp|P27612|PLAP_MOUSE Phospholipase A-2-activating protein OS=Mus musculus GN=Plaa PE=2 SV=4 Back     alignment and function desciption
 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 252/797 (31%), Positives = 399/797 (50%), Gaps = 69/797 (8%)

Query: 8   EYQLSSELRGHEDDVRGICVC--DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT 65
            Y+LS  L GHE DVRG+  C        + SRDRT R W+ D S  R +     + GH+
Sbjct: 7   RYRLSCSLPGHELDVRGLVCCLYPPGAFVSVSRDRTTRLWAPD-SPNRGFTEMHCMSGHS 65

Query: 66  SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDN-ED 124
           +FV  +  I  ++ +P G + +GG D  + ++ L S   +  L+GHK  V  ++      
Sbjct: 66  NFVSCVCIIPSSDIYPHGLIATGGNDHNICIFSLDSPMPLYILKGHKDTVCSLSSGKFGT 125

Query: 125 IVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIP-SGEIVSGSSDTTIKLWKGKKCAQ 183
           ++S S D+T K W   K +   + H A +  V  +P  G +++GS+D TIKLWK  +C +
Sbjct: 126 LLSGSWDTTAKVWLNDKCMMTLQGHTAAVWAVKILPEQGLMLTGSADKTIKLWKAGRCER 185

Query: 184 TFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHA-SGL 242
           TF+GH D VRGL+++     +S ++D +IR W +TG+ L    GHT  +YSI     S  
Sbjct: 186 TFLGHEDCVRGLAILSETEFLSCANDASIRRWQITGECLEVYFGHTNYIYSISVFPNSKD 245

Query: 243 IVSGSEDRFAKIWKDGVCVQSIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVA 301
            V+ +EDR  +IWK G C Q+I  P   +W    LENGDIV   SDG+ R++T   ++ A
Sbjct: 246 FVTTAEDRSLRIWKHGECAQTIRLPAQSIWCCCVLENGDIVVGASDGIIRVFTESEERTA 305

Query: 302 DSLELEAYASELSQYKLCRKK--VGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAY 359
            + E++A+  ELSQ  +  K   +G +  E LPG E L  PGT  GQT+++R+G+   AY
Sbjct: 306 SAEEIKAFERELSQATIDSKTGDLGDINAEQLPGREHLSEPGTREGQTRLIRDGERVEAY 365

Query: 360 SWDMKEQKWDKLGEVV--DGPDDGMNRPIL-DGIQYDYVFDVDIGDGEPTRKLPYNRSDN 416
            W + + +W K+G+VV   G +   +  +L +G ++DYVF +D+ +G P+ KLPYN SD+
Sbjct: 366 QWSVSDGRWIKIGDVVGSSGANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNVSDD 425

Query: 417 PYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTL-NTSFRDPYTGASAYVPGQPSSM 475
           P+  A  +L K +L   +  Q+ +FI+ NT  +   L NTSF DP+TG   YVPG     
Sbjct: 426 PWLVAYNFLQKNDLNPMFLDQVAKFIIDNTKGQTLGLGNTSFSDPFTGGGRYVPGTSGPS 485

Query: 476 SAIPAKPTFK--------------------------------------HIPKKGMLIFDA 497
           + +     F                                       + PKK  L FD 
Sbjct: 486 NTVQTADPFTGAGRYMPGSAGMDTTMTGVDPFTGNSAYRSAASKTVNIYFPKKEALTFDQ 545

Query: 498 AQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDIS 557
           A    IL K+ E N       E+K L+  +L       + KIL    +          + 
Sbjct: 546 ANPTQILGKLKELNGTA---PEEKKLTEDDL-----VLLEKILSLICNNSSEKPTAQQLQ 597

Query: 558 LLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPA 617
           +L K +  WP  ++FP +DILR++I HP+   +       + D     +  + +    PA
Sbjct: 598 ILWKAIN-WPEDIVFPALDILRLSIKHPN---VNENFCNEKGDQFSSHLINLLNPKGKPA 653

Query: 618 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLI 677
           N L  +R   N F + +    +   R  ++       S SNKN+ ++ +TL LNY+V   
Sbjct: 654 NQLLALRTFCNCFVSQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLTLNYSVCFH 713

Query: 678 EKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEG-----LVKKIALDFDVG 732
           +  + EG++  LS    I E    ++++ +R LVA+GTL+ +      L K + +D  + 
Sbjct: 714 KDHNIEGKAQCLSVISTILEVVQ-DLEATFRLLVALGTLISDDSNAIQLAKSLGVDSQIK 772

Query: 733 NIARVAKASKETKIAEV 749
               V++ +K ++   +
Sbjct: 773 KYVSVSEPAKVSECCRL 789
Involved in the maintenance of ubiquitin levels.
Mus musculus (taxid: 10090)
>sp|P54319|PLAP_RAT Phospholipase A-2-activating protein OS=Rattus norvegicus GN=Plaa PE=2 SV=3 Back     alignment and function description
>sp|Q9Y263|PLAP_HUMAN Phospholipase A-2-activating protein OS=Homo sapiens GN=PLAA PE=1 SV=2 Back     alignment and function description
>sp|Q6GM65|PLAP_XENLA Phospholipase A-2-activating protein OS=Xenopus laevis GN=plaa PE=2 SV=2 Back     alignment and function description
>sp|O94289|LUB1_SCHPO Ubiquitin homeostasis protein lub1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lub1 PE=1 SV=2 Back     alignment and function description
>sp|P36037|DOA1_YEAST Protein DOA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DOA1 PE=1 SV=1 Back     alignment and function description
>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 Back     alignment and function description
>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 Back     alignment and function description
>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 Back     alignment and function description
>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query760
255556123761 phospholipase A-2-activating protein, pu 0.998 0.997 0.764 0.0
356545299756 PREDICTED: phospholipase A-2-activating 0.994 1.0 0.773 0.0
224103461761 predicted protein [Populus trichocarpa] 0.997 0.996 0.767 0.0
356538817756 PREDICTED: phospholipase A-2-activating 0.993 0.998 0.767 0.0
224080283761 predicted protein [Populus trichocarpa] 0.997 0.996 0.766 0.0
225428560759 PREDICTED: phospholipase A-2-activating 0.998 1.0 0.779 0.0
18402031760 phospholipase A-2-activating protein [Ar 0.998 0.998 0.725 0.0
30685107760 phospholipase A-2-activating protein [Ar 0.998 0.998 0.724 0.0
297830546758 transducin family protein [Arabidopsis l 0.997 1.0 0.726 0.0
218199020756 hypothetical protein OsI_24733 [Oryza sa 0.988 0.993 0.651 0.0
>gi|255556123|ref|XP_002519096.1| phospholipase A-2-activating protein, putative [Ricinus communis] gi|223541759|gb|EEF43307.1| phospholipase A-2-activating protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1245 bits (3222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/759 (76%), Positives = 679/759 (89%)

Query: 2   MDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKIL 61
           +DIDFKEY+LS ELRGHEDDVRGIC+C + GIATSSRDRTVRFWSLD S+ ++Y SSKIL
Sbjct: 3   IDIDFKEYKLSCELRGHEDDVRGICICGDAGIATSSRDRTVRFWSLDQSNNKRYTSSKIL 62

Query: 62  LGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD 121
           LGH+SFVGPLAWI PNEE+PEGG+VSGGMDT+VLVW+L +GEKVQTL+GH+LQVTG+ LD
Sbjct: 63  LGHSSFVGPLAWIPPNEEYPEGGIVSGGMDTLVLVWNLSNGEKVQTLRGHRLQVTGIALD 122

Query: 122 NEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKKC 181
           NEDIVSSS+D TL+RWRK + VE WEAH + IQ VI++ SGE+V+GSSDTT+KLWKG+ C
Sbjct: 123 NEDIVSSSIDCTLRRWRKDRGVESWEAHKSAIQAVIKLHSGELVTGSSDTTLKLWKGRTC 182

Query: 182 AQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG 241
             TFVGH+DTVRGL+ M G+G++SASHD  IRLWA+TGQVLMEMVGHT+IVYS++SH SG
Sbjct: 183 LHTFVGHSDTVRGLAEMQGLGVLSASHDGLIRLWAITGQVLMEMVGHTSIVYSVNSHISG 242

Query: 242 LIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVA 301
           LIVSGSED  AKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGV RIWT H +++A
Sbjct: 243 LIVSGSEDCSAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVVRIWTSHQERIA 302

Query: 302 DSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSW 361
           D L+LE+Y S+LSQYKL RK+VGGLKLEDLPGL+ALQIPGTN GQTK++REGDNGVAY+W
Sbjct: 303 DPLDLESYVSQLSQYKLSRKRVGGLKLEDLPGLDALQIPGTNDGQTKIIREGDNGVAYAW 362

Query: 362 DMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAA 421
           ++KEQKWDK+GEVVDGP DG+ RP+LDGI+YDYVFDVDIGDGEP RKLPYN+++NPY  A
Sbjct: 363 NLKEQKWDKIGEVVDGPADGIKRPVLDGIEYDYVFDVDIGDGEPIRKLPYNKTENPYSTA 422

Query: 422 DKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAK 481
           DKWLLKENLP SYRQQIV+FIL N+GQ+D  L++SFRDP+TG+SAYVPGQPS++SA+  K
Sbjct: 423 DKWLLKENLPLSYRQQIVQFILHNSGQRDMALDSSFRDPFTGSSAYVPGQPSNLSAVSTK 482

Query: 482 PTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILK 541
            T+KHIPKKGML+FD AQFDGILKKI EFNNALL D EK+NLS+ E + SR+ AVVK LK
Sbjct: 483 ATYKHIPKKGMLVFDVAQFDGILKKITEFNNALLSDPEKQNLSLLEADISRLGAVVKTLK 542

Query: 542 DTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDV 601
           D+SHYH SSFA  DI+LL KLLK+WP AMIFPV+DILRM +LHPDGAS++L H+EN ND+
Sbjct: 543 DSSHYHTSSFAQADIALLFKLLKSWPVAMIFPVVDILRMIVLHPDGASVILMHIENGNDI 602

Query: 602 LMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNV 661
           LMEMIE+V++N +L  N LT IR VTNLFKNS +YSWL ++RS I+DAFSSC  S NKN+
Sbjct: 603 LMEMIERVTTNSSLAPNFLTTIRLVTNLFKNSGYYSWLLRHRSGIIDAFSSCCPSPNKNL 662

Query: 662 QLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGL 721
           QLSYSTLILN+AVLLIEK D+EGQS VLSAALEIAEEE++EVDSK+RALVAIG+LML+GL
Sbjct: 663 QLSYSTLILNFAVLLIEKNDQEGQSQVLSAALEIAEEENLEVDSKFRALVAIGSLMLDGL 722

Query: 722 VKKIALDFDVGNIARVAKASKETKIAEVGADIELLAKQS 760
           VK+IALDFDV NIA++AKASKE KIAEVGADIELL KQS
Sbjct: 723 VKQIALDFDVQNIAKIAKASKEAKIAEVGADIELLTKQS 761

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356545299|ref|XP_003541081.1| PREDICTED: phospholipase A-2-activating protein-like [Glycine max] Back     alignment and taxonomy information
>gi|224103461|ref|XP_002313065.1| predicted protein [Populus trichocarpa] gi|222849473|gb|EEE87020.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356538817|ref|XP_003537897.1| PREDICTED: phospholipase A-2-activating protein-like [Glycine max] Back     alignment and taxonomy information
>gi|224080283|ref|XP_002306082.1| predicted protein [Populus trichocarpa] gi|222849046|gb|EEE86593.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225428560|ref|XP_002284653.1| PREDICTED: phospholipase A-2-activating protein [Vitis vinifera] gi|297741417|emb|CBI32548.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|18402031|ref|NP_566620.1| phospholipase A-2-activating protein [Arabidopsis thaliana] gi|15294240|gb|AAK95297.1|AF410311_1 AT3g18860/MCB22_3 [Arabidopsis thaliana] gi|9294695|dbj|BAB03095.1| unnamed protein product [Arabidopsis thaliana] gi|332642639|gb|AEE76160.1| phospholipase A-2-activating protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30685107|ref|NP_850612.1| phospholipase A-2-activating protein [Arabidopsis thaliana] gi|332642640|gb|AEE76161.1| phospholipase A-2-activating protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297830546|ref|XP_002883155.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297328995|gb|EFH59414.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|218199020|gb|EEC81447.1| hypothetical protein OsI_24733 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query760
TAIR|locus:2087921760 AT3G18860 "AT3G18860" [Arabido 0.998 0.998 0.714 1.3e-308
UNIPROTKB|F1NGY5805 PLAA "Uncharacterized protein" 0.623 0.588 0.366 7.1e-109
UNIPROTKB|A7Z055796 PLAA "PLAA protein" [Bos tauru 0.625 0.596 0.382 6.4e-108
UNIPROTKB|E2RI74800 PLAA "Uncharacterized protein" 0.626 0.595 0.382 6.5e-106
RGD|621245795 Plaa "phospholipase A2, activa 0.635 0.607 0.371 1.1e-105
UNIPROTKB|P54319795 Plaa "Phospholipase A-2-activa 0.635 0.607 0.371 1.1e-105
POMBASE|SPBC887.04c718 lub1 "WD repeat protein Lub1" 0.567 0.600 0.373 3.9e-87
UNIPROTKB|Q9Y263795 PLAA "Phospholipase A-2-activa 0.727 0.695 0.344 5.4e-86
MGI|MGI:104810794 Plaa "phospholipase A2, activa 0.727 0.696 0.346 6.2e-85
UNIPROTKB|F1SP81804 PLAA "Uncharacterized protein" 0.726 0.686 0.340 4.4e-84
TAIR|locus:2087921 AT3G18860 "AT3G18860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2961 (1047.4 bits), Expect = 1.3e-308, P = 1.3e-308
 Identities = 542/759 (71%), Positives = 651/759 (85%)

Query:     1 MMDIDFKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKI 60
             +MDIDF EY+L  EL GH+DDVRGICVC++  IATSSRDRT+R WSLDPSDKRKY S KI
Sbjct:     2 VMDIDFNEYKLRCELHGHDDDVRGICVCNDENIATSSRDRTIRVWSLDPSDKRKYTSEKI 61

Query:    61 LLGHTSFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL 120
             LLGHTSFVGPLAWI P +E+PEG LVSG MDT V VW+L +GE +QTL+GH++QVTGV +
Sbjct:    62 LLGHTSFVGPLAWIPPTDEYPEGRLVSGSMDTFVFVWNLMNGENIQTLKGHQMQVTGVAI 121

Query:   121 DNEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGEIVSGSSDTTIKLWKGKK 180
             DNEDIVSSSVD TLKRWR G+LVE W+AH +PIQ VIR+PSGE+VSGSSD ++KLWKGK 
Sbjct:   122 DNEDIVSSSVDQTLKRWRNGQLVESWDAHQSPIQAVIRLPSGELVSGSSDASLKLWKGKT 181

Query:   181 CAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHAS 240
               QT  GHTDTVRGL+VMP +G +SASHD +IRLWAL+G+VL+EMVGHT++VYS+D+H+S
Sbjct:   182 SLQTLSGHTDTVRGLAVMPDLGFLSASHDGSIRLWALSGEVLLEMVGHTSLVYSVDAHSS 241

Query:   241 GLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKV 300
             GLIVS SEDR AKIWKDGVCVQS+EHPGC+WDAKFLE GDIVTACSDGV R+WTV  D +
Sbjct:   242 GLIVSASEDRHAKIWKDGVCVQSLEHPGCIWDAKFLETGDIVTACSDGVVRVWTVRHDAI 301

Query:   301 ADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYS 360
             AD +E++AY S++SQYKL RKKVGGLKL++LPGL++L  PGT+ GQTKVVREGDNGVAY+
Sbjct:   302 ADQMEIDAYDSQISQYKLSRKKVGGLKLDELPGLDSLTSPGTSDGQTKVVREGDNGVAYA 361

Query:   361 WDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDA 420
             W+MKEQ+WDK+GEVVDGPD   +RPI +G+QYD+VFDVDIGDGEP RKLPYNRSDNPYDA
Sbjct:   362 WNMKEQRWDKIGEVVDGPDGVADRPIHEGVQYDFVFDVDIGDGEPIRKLPYNRSDNPYDA 421

Query:   421 ADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPA 480
             ADKWLLKENLPF+YRQQIVEFILQN+GQKDF  N SFRDP+TGA+AYVPGQ S  +A PA
Sbjct:   422 ADKWLLKENLPFAYRQQIVEFILQNSGQKDFNFNPSFRDPFTGANAYVPGQASRTAATPA 481

Query:   481 KPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKIL 540
             KP +KHIPK+G+L+FDAAQ+DGILKK+ EFN  L  D    + S++ELE SRV A+V IL
Sbjct:   482 KPLYKHIPKRGVLVFDAAQYDGILKKMTEFNTTLRSDAVNNDKSLTELEVSRVGAIVNIL 541

Query:   541 KDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQND 600
             KDTSHYH ++FAD+DI+LLLK+L+ WPPAM+FP  DI+RM +LH  GASLL+KHVEN ND
Sbjct:   542 KDTSHYHSTNFADMDIALLLKVLQAWPPAMMFPATDIVRMLVLHHHGASLLIKHVENNND 601

Query:   601 VLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKN 660
             +L+++I+KV+ +  LPANLLT +R + NLFKNSS++ WLQ + S+ILDAFS+CYSS NKN
Sbjct:   602 LLLDLIKKVTEDSALPANLLTTVRVLVNLFKNSSFHYWLQTHHSQILDAFSNCYSSPNKN 661

Query:   661 VQLSYSTLILNYAVLLIEKKDEEGQSHVXXXXXXXXXXXXXXVDSKYRALVAIGTLMLEG 720
             +QL+YSTL+LNYAVLLIEKKD+EGQ+ V              VDSK+R+LVAIG+LMLEG
Sbjct:   662 LQLAYSTLLLNYAVLLIEKKDQEGQAQVLSAALQVAEEEAADVDSKFRSLVAIGSLMLEG 721

Query:   721 LVKKIALDFDVGNIARVAKASKETKIAEVGADIELLAKQ 759
             LVKKIA+DFDV +IA+ AKASKE KIAEVGADI+L+ +Q
Sbjct:   722 LVKKIAIDFDVESIAKSAKASKEAKIAEVGADIDLVIRQ 760
GO:0000166 "nucleotide binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
UNIPROTKB|F1NGY5 PLAA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A7Z055 PLAA "PLAA protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RI74 PLAA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|621245 Plaa "phospholipase A2, activating protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P54319 Plaa "Phospholipase A-2-activating protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
POMBASE|SPBC887.04c lub1 "WD repeat protein Lub1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y263 PLAA "Phospholipase A-2-activating protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:104810 Plaa "phospholipase A2, activating protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SP81 PLAA "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P36037DOA1_YEASTNo assigned EC number0.31750.850.9034yesno
P54319PLAP_RATNo assigned EC number0.31370.95520.9132yesno
Q9Y263PLAP_HUMANNo assigned EC number0.32030.94600.9044yesno
O94289LUB1_SCHPONo assigned EC number0.31570.86840.9192yesno
P27612PLAP_MOUSENo assigned EC number0.31610.95780.9168yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query760
pfam08324263 pfam08324, PUL, PUL domain 7e-65
cd00200289 cd00200, WD40, WD40 domain, found in a number of e 2e-55
pfam09070116 pfam09070, PFU, PFU (PLAA family ubiquitin binding 6e-49
cd00200289 cd00200, WD40, WD40 domain, found in a number of e 1e-46
cd00200289 cd00200, WD40, WD40 domain, found in a number of e 4e-35
COG2319466 COG2319, COG2319, FOG: WD40 repeat [General functi 1e-26
COG2319466 COG2319, COG2319, FOG: WD40 repeat [General functi 2e-25
COG2319466 COG2319, COG2319, FOG: WD40 repeat [General functi 2e-20
COG2319466 COG2319, COG2319, FOG: WD40 repeat [General functi 2e-18
COG2319466 COG2319, COG2319, FOG: WD40 repeat [General functi 7e-11
PLN00181793 PLN00181, PLN00181, protein SPA1-RELATED; Provisio 5e-07
pfam0040039 pfam00400, WD40, WD domain, G-beta repeat 2e-04
smart0032040 smart00320, WD40, WD40 repeats 2e-04
PTZ00421493 PTZ00421, PTZ00421, coronin; Provisional 2e-04
smart0032040 smart00320, WD40, WD40 repeats 3e-04
pfam0040039 pfam00400, WD40, WD domain, G-beta repeat 6e-04
smart0032040 smart00320, WD40, WD40 repeats 6e-04
pfam0040039 pfam00400, WD40, WD domain, G-beta repeat 0.001
>gnl|CDD|219795 pfam08324, PUL, PUL domain Back     alignment and domain information 
 Score =  216 bits (552), Expect = 7e-65
 Identities = 100/273 (36%), Positives = 148/273 (54%), Gaps = 14/273 (5%)

Query: 485 KHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTS 544
           K  P K  L F  A  D ILKK+ EFN+ L        L +S+ E + + +++  LK++S
Sbjct: 1   KIFPVKNYLTFKTANLDKILKKLKEFNSKL-----SNELKLSDDELNAIESLLSELKESS 55

Query: 545 HYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLME 604
                +  +     LLK+LK+WP A  FP +D+LR+ +L+P  A+LL      +   L+ 
Sbjct: 56  TA---ALLEALTIYLLKILKSWPEANRFPALDLLRLLVLNPPAAALLC--DAFEIADLIS 110

Query: 605 MIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSS-NKNVQL 663
            +  + SN   PA LL  +R + NLF NS+  + L  +   ILD  S   SS  NKN+Q+
Sbjct: 111 TLILLGSNSKNPALLLLTLRLLANLFSNSTGRNLLLSHDDSILDLISVLKSSLLNKNLQI 170

Query: 664 SYSTLILNYAVLLIEKK-DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLV 722
           + +TL+LN AVLL+E   D E    +LS+ LE   EE  + ++ YR LVA+GTL      
Sbjct: 171 ALATLLLNLAVLLLENNADVEALPELLSSILEALSEEESDEEALYRLLVALGTLASGDPT 230

Query: 723 KKIALDF-DVGNIA-RVAKASKETKIAEVGADI 753
                   +V NIA +  +ASKE +  EVG+D+
Sbjct: 231 AVQLAKSLNVSNIATKKKRASKEKRFKEVGSDL 263

The PUL (PLAP, Ufd3p and Lub1p) domain is a novel alpha-helical Ub-associated domain. It directly binds to Cdc48, a chaperone-like AAA ATPase that collects ubiquitylated substrates. Length = 263
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment Back     alignment and domain information
>gnl|CDD|204121 pfam09070, PFU, PFU (PLAA family ubiquitin binding) Back     alignment and domain information
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment Back     alignment and domain information
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment Back     alignment and domain information
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional Back     alignment and domain information
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat Back     alignment and domain information
>gnl|CDD|197651 smart00320, WD40, WD40 repeats Back     alignment and domain information
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional Back     alignment and domain information
>gnl|CDD|197651 smart00320, WD40, WD40 repeats Back     alignment and domain information
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat Back     alignment and domain information
>gnl|CDD|197651 smart00320, WD40, WD40 repeats Back     alignment and domain information
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 760
KOG0301745 consensus Phospholipase A2-activating protein (con 100.0
PF08324268 PUL: PUL domain; InterPro: IPR013535 The PUL (afte 100.0
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 100.0
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 100.0
KOG0286343 consensus G-protein beta subunit [General function 100.0
KOG0279315 consensus G protein beta subunit-like protein [Sig 100.0
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 100.0
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 100.0
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 100.0
KOG0645312 consensus WD40 repeat protein [General function pr 100.0
KOG0279315 consensus G protein beta subunit-like protein [Sig 100.0
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 100.0
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 100.0
KOG0319775 consensus WD40-repeat-containing subunit of the 18 100.0
PF09070116 PFU: PFU (PLAA family ubiquitin binding); InterPro 100.0
KOG0319775 consensus WD40-repeat-containing subunit of the 18 100.0
KOG0295406 consensus WD40 repeat-containing protein [Function 100.0
KOG0291893 consensus WD40-repeat-containing subunit of the 18 100.0
KOG0315311 consensus G-protein beta subunit-like protein (con 100.0
KOG0286343 consensus G-protein beta subunit [General function 100.0
KOG0281499 consensus Beta-TrCP (transducin repeats containing 100.0
KOG0265338 consensus U5 snRNP-specific protein-like factor an 100.0
KOG0284464 consensus Polyadenylation factor I complex, subuni 100.0
KOG0318603 consensus WD40 repeat stress protein/actin interac 100.0
KOG0263707 consensus Transcription initiation factor TFIID, s 99.98
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 99.98
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 99.98
KOG0291893 consensus WD40-repeat-containing subunit of the 18 99.97
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 99.97
KOG0316307 consensus Conserved WD40 repeat-containing protein 99.97
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 99.97
PLN00181793 protein SPA1-RELATED; Provisional 99.97
KOG0293519 consensus WD40 repeat-containing protein [Function 99.97
KOG0295406 consensus WD40 repeat-containing protein [Function 99.97
KOG0296399 consensus Angio-associated migratory cell protein 99.97
KOG0315311 consensus G-protein beta subunit-like protein (con 99.97
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 99.97
KOG0263707 consensus Transcription initiation factor TFIID, s 99.97
KOG0266456 consensus WD40 repeat-containing protein [General 99.97
KOG0301745 consensus Phospholipase A2-activating protein (con 99.97
KOG0313423 consensus Microtubule binding protein YTM1 (contai 99.97
KOG0281499 consensus Beta-TrCP (transducin repeats containing 99.97
KOG0306888 consensus WD40-repeat-containing subunit of the 18 99.97
KOG0282503 consensus mRNA splicing factor [Function unknown] 99.97
KOG0318603 consensus WD40 repeat stress protein/actin interac 99.96
KOG0645312 consensus WD40 repeat protein [General function pr 99.96
KOG0284464 consensus Polyadenylation factor I complex, subuni 99.96
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 99.96
KOG0278334 consensus Serine/threonine kinase receptor-associa 99.96
KOG0306888 consensus WD40-repeat-containing subunit of the 18 99.96
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 99.96
KOG0275508 consensus Conserved WD40 repeat-containing protein 99.96
KOG0300481 consensus WD40 repeat-containing protein [Function 99.96
KOG0268433 consensus Sof1-like rRNA processing protein (conta 99.95
KOG0266456 consensus WD40 repeat-containing protein [General 99.95
KOG0643327 consensus Translation initiation factor 3, subunit 99.95
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.95
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 99.95
KOG0313423 consensus Microtubule binding protein YTM1 (contai 99.95
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 99.95
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 99.95
KOG1407313 consensus WD40 repeat protein [Function unknown] 99.95
KOG0265338 consensus U5 snRNP-specific protein-like factor an 99.95
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 99.94
KOG0296399 consensus Angio-associated migratory cell protein 99.94
KOG0316307 consensus Conserved WD40 repeat-containing protein 99.94
KOG0640430 consensus mRNA cleavage stimulating factor complex 99.94
KOG0288459 consensus WD40 repeat protein TipD [General functi 99.94
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.94
KOG0283712 consensus WD40 repeat-containing protein [Function 99.94
KOG0310487 consensus Conserved WD40 repeat-containing protein 99.94
KOG0641350 consensus WD40 repeat protein [General function pr 99.93
KOG0647347 consensus mRNA export protein (contains WD40 repea 99.93
KOG0282503 consensus mRNA splicing factor [Function unknown] 99.93
KOG0772641 consensus Uncharacterized conserved protein, conta 99.93
KOG0293519 consensus WD40 repeat-containing protein [Function 99.93
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 99.93
KOG0308735 consensus Conserved WD40 repeat-containing protein 99.93
PLN00181793 protein SPA1-RELATED; Provisional 99.93
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 99.92
KOG2106626 consensus Uncharacterized conserved protein, conta 99.92
KOG0278334 consensus Serine/threonine kinase receptor-associa 99.92
KOG14081080 consensus WD40 repeat protein [Function unknown] 99.92
KOG1539910 consensus WD repeat protein [General function pred 99.92
KOG0300481 consensus WD40 repeat-containing protein [Function 99.92
KOG0641350 consensus WD40 repeat protein [General function pr 99.92
KOG0268433 consensus Sof1-like rRNA processing protein (conta 99.92
KOG14081080 consensus WD40 repeat protein [Function unknown] 99.92
KOG2096420 consensus WD40 repeat protein [General function pr 99.92
KOG0973 942 consensus Histone transcription regulator HIRA, WD 99.91
KOG0294362 consensus WD40 repeat-containing protein [Function 99.91
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 99.91
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 99.91
KOG0275508 consensus Conserved WD40 repeat-containing protein 99.91
KOG0294362 consensus WD40 repeat-containing protein [Function 99.91
KOG0283712 consensus WD40 repeat-containing protein [Function 99.9
KOG0310487 consensus Conserved WD40 repeat-containing protein 99.9
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 99.9
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 99.9
PTZ00421493 coronin; Provisional 99.9
KOG0289506 consensus mRNA splicing factor [General function p 99.9
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 99.9
KOG0308735 consensus Conserved WD40 repeat-containing protein 99.9
PTZ00421493 coronin; Provisional 99.9
PTZ00420568 coronin; Provisional 99.9
PTZ00420568 coronin; Provisional 99.9
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.9
KOG2106626 consensus Uncharacterized conserved protein, conta 99.9
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 99.89
KOG1063764 consensus RNA polymerase II elongator complex, sub 99.89
KOG2048691 consensus WD40 repeat protein [General function pr 99.89
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.89
KOG0973942 consensus Histone transcription regulator HIRA, WD 99.89
KOG0288459 consensus WD40 repeat protein TipD [General functi 99.89
KOG0639705 consensus Transducin-like enhancer of split protei 99.89
KOG4328498 consensus WD40 protein [Function unknown] 99.88
KOG0646476 consensus WD40 repeat protein [General function pr 99.88
KOG0643327 consensus Translation initiation factor 3, subunit 99.88
KOG0772641 consensus Uncharacterized conserved protein, conta 99.88
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 99.88
KOG1407313 consensus WD40 repeat protein [Function unknown] 99.88
KOG0640430 consensus mRNA cleavage stimulating factor complex 99.87
KOG0289506 consensus mRNA splicing factor [General function p 99.87
KOG1539910 consensus WD repeat protein [General function pred 99.87
KOG2048691 consensus WD40 repeat protein [General function pr 99.87
KOG0647347 consensus mRNA export protein (contains WD40 repea 99.86
KOG0269839 consensus WD40 repeat-containing protein [Function 99.86
KOG0646476 consensus WD40 repeat protein [General function pr 99.86
KOG4283397 consensus Transcription-coupled repair protein CSA 99.85
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 99.85
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 99.84
KOG0269839 consensus WD40 repeat-containing protein [Function 99.84
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 99.83
KOG0267825 consensus Microtubule severing protein katanin p80 99.83
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.83
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 99.83
KOG1274 933 consensus WD40 repeat protein [General function pr 99.83
KOG0267825 consensus Microtubule severing protein katanin p80 99.83
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.82
KOG1063764 consensus RNA polymerase II elongator complex, sub 99.81
KOG0302440 consensus Ribosome Assembly protein [General funct 99.81
KOG2096420 consensus WD40 repeat protein [General function pr 99.81
KOG0270463 consensus WD40 repeat-containing protein [Function 99.81
KOG4328498 consensus WD40 protein [Function unknown] 99.81
KOG1274 933 consensus WD40 repeat protein [General function pr 99.81
KOG0270463 consensus WD40 repeat-containing protein [Function 99.81
KOG1273405 consensus WD40 repeat protein [General function pr 99.8
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 99.8
KOG2055514 consensus WD40 repeat protein [General function pr 99.8
KOG0302440 consensus Ribosome Assembly protein [General funct 99.79
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 99.79
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 99.78
KOG1445 1012 consensus Tumor-specific antigen (contains WD repe 99.78
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 99.77
KOG0639705 consensus Transducin-like enhancer of split protei 99.77
KOG0644 1113 consensus Uncharacterized conserved protein, conta 99.76
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 99.75
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 99.74
KOG4283397 consensus Transcription-coupled repair protein CSA 99.74
KOG0322323 consensus G-protein beta subunit-like protein GNB1 99.74
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 99.73
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 99.72
KOG1273405 consensus WD40 repeat protein [General function pr 99.71
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 99.7
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 99.7
COG2319466 FOG: WD40 repeat [General function prediction only 99.7
KOG2055514 consensus WD40 repeat protein [General function pr 99.7
KOG0290364 consensus Conserved WD40 repeat-containing protein 99.7
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 99.7
COG2319466 FOG: WD40 repeat [General function prediction only 99.69
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 99.69
KOG1188376 consensus WD40 repeat protein [General function pr 99.69
KOG15171387 consensus Guanine nucleotide binding protein MIP1 99.68
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 99.68
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 99.68
KOG15171387 consensus Guanine nucleotide binding protein MIP1 99.67
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 99.66
KOG4227609 consensus WD40 repeat protein [General function pr 99.66
KOG0303472 consensus Actin-binding protein Coronin, contains 99.66
KOG0649325 consensus WD40 repeat protein [General function pr 99.65
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 99.65
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 99.64
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 99.63
KOG1188376 consensus WD40 repeat protein [General function pr 99.62
KOG0649325 consensus WD40 repeat protein [General function pr 99.61
KOG12401431 consensus Protein kinase containing WD40 repeats [ 99.59
KOG1334559 consensus WD40 repeat protein [General function pr 99.59
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 99.58
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 99.58
KOG0644 1113 consensus Uncharacterized conserved protein, conta 99.58
KOG0303472 consensus Actin-binding protein Coronin, contains 99.58
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 99.57
KOG0290364 consensus Conserved WD40 repeat-containing protein 99.57
KOG1963792 consensus WD40 repeat protein [General function pr 99.56
KOG1963792 consensus WD40 repeat protein [General function pr 99.52
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 99.52
KOG0322323 consensus G-protein beta subunit-like protein GNB1 99.5
PRK11028330 6-phosphogluconolactonase; Provisional 99.5
KOG2110391 consensus Uncharacterized conserved protein, conta 99.5
KOG1310758 consensus WD40 repeat protein [General function pr 99.49
KOG1310758 consensus WD40 repeat protein [General function pr 99.48
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 99.47
KOG4227609 consensus WD40 repeat protein [General function pr 99.47
KOG14451012 consensus Tumor-specific antigen (contains WD repe 99.45
PRK01742429 tolB translocation protein TolB; Provisional 99.4
KOG12401431 consensus Protein kinase containing WD40 repeats [ 99.38
KOG1272545 consensus WD40-repeat-containing subunit of the 18 99.38
PRK01742429 tolB translocation protein TolB; Provisional 99.37
KOG1334559 consensus WD40 repeat protein [General function pr 99.34
KOG3881412 consensus Uncharacterized conserved protein [Funct 99.34
KOG1272545 consensus WD40-repeat-containing subunit of the 18 99.34
KOG2111346 consensus Uncharacterized conserved protein, conta 99.33
KOG0771398 consensus Prolactin regulatory element-binding pro 99.33
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 99.33
KOG3881412 consensus Uncharacterized conserved protein [Funct 99.32
PRK11028330 6-phosphogluconolactonase; Provisional 99.32
KOG1409404 consensus Uncharacterized conserved protein, conta 99.31
KOG0771398 consensus Prolactin regulatory element-binding pro 99.31
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 99.3
KOG2321703 consensus WD40 repeat protein [General function pr 99.3
KOG4497447 consensus Uncharacterized conserved protein WDR8, 99.29
KOG2111346 consensus Uncharacterized conserved protein, conta 99.27
PRK03629429 tolB translocation protein TolB; Provisional 99.26
KOG2139445 consensus WD40 repeat protein [General function pr 99.26
KOG4497447 consensus Uncharacterized conserved protein WDR8, 99.24
KOG0974 967 consensus WD-repeat protein WDR6, WD repeat superf 99.24
KOG2110391 consensus Uncharacterized conserved protein, conta 99.23
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 99.21
PRK04922433 tolB translocation protein TolB; Provisional 99.21
KOG2321703 consensus WD40 repeat protein [General function pr 99.19
PRK05137435 tolB translocation protein TolB; Provisional 99.19
KOG41901034 consensus Uncharacterized conserved protein [Funct 99.18
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 99.16
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 99.16
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 99.15
PRK02889427 tolB translocation protein TolB; Provisional 99.14
KOG2315566 consensus Predicted translation initiation factor 99.13
PRK05137435 tolB translocation protein TolB; Provisional 99.12
PRK03629429 tolB translocation protein TolB; Provisional 99.11
KOG2041 1189 consensus WD40 repeat protein [General function pr 99.05
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 99.05
KOG0974 967 consensus WD-repeat protein WDR6, WD repeat superf 99.03
PRK02889427 tolB translocation protein TolB; Provisional 98.99
PRK04922433 tolB translocation protein TolB; Provisional 98.99
KOG10642439 consensus RAVE (regulator of V-ATPase assembly) co 98.98
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 98.98
KOG2315566 consensus Predicted translation initiation factor 98.98
KOG0280339 consensus Uncharacterized conserved protein [Amino 98.95
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 98.95
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 98.94
KOG10642439 consensus RAVE (regulator of V-ATPase assembly) co 98.93
KOG2139445 consensus WD40 repeat protein [General function pr 98.92
PRK00178430 tolB translocation protein TolB; Provisional 98.9
KOG0280339 consensus Uncharacterized conserved protein [Amino 98.88
KOG1409404 consensus Uncharacterized conserved protein, conta 98.88
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 98.87
PRK04792448 tolB translocation protein TolB; Provisional 98.85
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 98.84
KOG4547541 consensus WD40 repeat-containing protein [General 98.84
KOG19121062 consensus WD40 repeat protein [General function pr 98.83
KOG4547541 consensus WD40 repeat-containing protein [General 98.83
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 98.83
COG5354561 Uncharacterized protein, contains Trp-Asp (WD) rep 98.81
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 98.8
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 98.77
COG5170460 CDC55 Serine/threonine protein phosphatase 2A, reg 98.76
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 98.76
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 98.75
KOG2041 1189 consensus WD40 repeat protein [General function pr 98.73
COG5354561 Uncharacterized protein, contains Trp-Asp (WD) rep 98.69
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 98.66
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 98.63
PRK04792448 tolB translocation protein TolB; Provisional 98.63
PRK01029428 tolB translocation protein TolB; Provisional 98.63
PLN029191057 haloacid dehalogenase-like hydrolase family protei 98.62
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 98.6
KOG4532344 consensus WD40-like repeat containing protein [Gen 98.59
KOG4532344 consensus WD40-like repeat containing protein [Gen 98.57
PRK01029428 tolB translocation protein TolB; Provisional 98.57
KOG1912 1062 consensus WD40 repeat protein [General function pr 98.56
PLN029191057 haloacid dehalogenase-like hydrolase family protei 98.52
PRK00178430 tolB translocation protein TolB; Provisional 98.52
KOG3914390 consensus WD repeat protein WDR4 [Function unknown 98.52
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 98.51
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 98.5
KOG41901034 consensus Uncharacterized conserved protein [Funct 98.49
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 98.47
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 98.46
KOG4714319 consensus Nucleoporin [Nuclear structure] 98.45
COG4946668 Uncharacterized protein related to the periplasmic 98.41
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 98.4
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 98.28
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 98.28
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 98.28
COG5170460 CDC55 Serine/threonine protein phosphatase 2A, reg 98.23
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 98.22
KOG4714319 consensus Nucleoporin [Nuclear structure] 98.22
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 98.21
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 98.17
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 98.14
PF04762 928 IKI3: IKI3 family; InterPro: IPR006849 Members of 98.12
KOG3914390 consensus WD repeat protein WDR4 [Function unknown 98.08
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 98.06
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 98.06
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 98.04
KOG2066 846 consensus Vacuolar assembly/sorting protein VPS41 98.01
PRK04043419 tolB translocation protein TolB; Provisional 97.99
KOG2314698 consensus Translation initiation factor 3, subunit 97.99
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 97.97
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 97.97
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 97.96
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 97.94
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 97.93
KOG2695425 consensus WD40 repeat protein [General function pr 97.93
KOG2695425 consensus WD40 repeat protein [General function pr 97.91
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 97.89
COG4946668 Uncharacterized protein related to the periplasmic 97.89
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 97.88
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 97.85
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 97.79
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 97.76
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 97.73
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 97.71
KOG1008783 consensus Uncharacterized conserved protein, conta 97.71
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 97.68
PF08553794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 97.66
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 97.63
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 97.62
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 97.61
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 97.61
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 97.6
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 97.55
PRK04043419 tolB translocation protein TolB; Provisional 97.53
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 97.43
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 97.41
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 97.36
KOG3621726 consensus WD40 repeat-containing protein [General 97.34
KOG2314698 consensus Translation initiation factor 3, subunit 97.25
PF06977248 SdiA-regulated: SdiA-regulated; InterPro: IPR00972 97.22
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 97.22
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 97.21
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 97.21
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 97.2
smart0032040 WD40 WD40 repeats. Note that these repeats are per 97.1
PF06977248 SdiA-regulated: SdiA-regulated; InterPro: IPR00972 97.08
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 97.06
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 97.03
PF14727418 PHTB1_N: PTHB1 N-terminus 96.99
KOG3621726 consensus WD40 repeat-containing protein [General 96.94
COG3386307 Gluconolactonase [Carbohydrate transport and metab 96.94
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 96.92
PRK02888635 nitrous-oxide reductase; Validated 96.91
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 96.9
KOG1008783 consensus Uncharacterized conserved protein, conta 96.82
PF08553794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 96.73
TIGR03075527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 96.71
COG3386307 Gluconolactonase [Carbohydrate transport and metab 96.65
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 96.54
KOG2395644 consensus Protein involved in vacuole import and d 96.46
smart0032040 WD40 WD40 repeats. Note that these repeats are per 96.44
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 96.22
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 96.13
PLN00033398 photosystem II stability/assembly factor; Provisio 96.11
PF00930353 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin 95.85
PF14655415 RAB3GAP2_N: Rab3 GTPase-activating protein regulat 95.73
KOG4499310 consensus Ca2+-binding protein Regucalcin/SMP30 [I 95.68
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 95.62
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 95.47
KOG4640665 consensus Anaphase-promoting complex (APC), subuni 95.37
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 95.36
PRK13684334 Ycf48-like protein; Provisional 95.3
PRK02888635 nitrous-oxide reductase; Validated 95.27
KOG2444238 consensus WD40 repeat protein [General function pr 95.26
KOG4640 665 consensus Anaphase-promoting complex (APC), subuni 95.17
KOG2395644 consensus Protein involved in vacuole import and d 95.06
KOG2444238 consensus WD40 repeat protein [General function pr 94.97
KOG18971096 consensus Damage-specific DNA binding complex, sub 94.92
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 94.17
COG0823425 TolB Periplasmic component of the Tol biopolymer t 94.16
TIGR03118336 PEPCTERM_chp_1 conserved hypothetical protein TIGR 94.12
PRK13684334 Ycf48-like protein; Provisional 94.04
COG0823425 TolB Periplasmic component of the Tol biopolymer t 93.72
KOG3616 1636 consensus Selective LIM binding factor [Transcript 93.53
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 93.39
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 93.05
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 92.97
PF15390671 DUF4613: Domain of unknown function (DUF4613) 92.91
COG3204316 Uncharacterized protein conserved in bacteria [Fun 92.85
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 92.63
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 92.58
PRK13616591 lipoprotein LpqB; Provisional 92.52
KOG2280829 consensus Vacuolar assembly/sorting protein VPS16 92.27
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 92.26
PF12234631 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 92.06
KOG2280829 consensus Vacuolar assembly/sorting protein VPS16 92.01
PF15390671 DUF4613: Domain of unknown function (DUF4613) 91.87
PHA02713557 hypothetical protein; Provisional 91.63
KOG1916 1283 consensus Nuclear protein, contains WD40 repeats [ 90.66
TIGR02604367 Piru_Ver_Nterm putative membrane-bound dehydrogena 90.5
PF12234631 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 90.33
PRK13616591 lipoprotein LpqB; Provisional 89.52
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 89.28
PLN00033398 photosystem II stability/assembly factor; Provisio 89.23
KOG4499310 consensus Ca2+-binding protein Regucalcin/SMP30 [I 88.93
COG3292671 Predicted periplasmic ligand-binding sensor domain 88.85
PHA02713557 hypothetical protein; Provisional 88.68
KOG3630 1405 consensus Nuclear pore complex, Nup214/CAN compone 87.51
TIGR03075527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 87.11
KOG1900 1311 consensus Nuclear pore complex, Nup155 component ( 86.99
PHA03098534 kelch-like protein; Provisional 86.92
COG5167776 VID27 Protein involved in vacuole import and degra 86.73
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 86.4
COG3391381 Uncharacterized conserved protein [Function unknow 85.94
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 84.9
KOG18971096 consensus Damage-specific DNA binding complex, sub 84.67
PF14583386 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C 84.64
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 83.57
KOG3616 1636 consensus Selective LIM binding factor [Transcript 83.37
COG5167776 VID27 Protein involved in vacuole import and degra 83.13
PF14583386 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C 83.0
TIGR03074764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 82.93
COG3391381 Uncharacterized conserved protein [Function unknow 82.89
KOG2377657 consensus Uncharacterized conserved protein [Funct 82.47
PF08728717 CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans 82.32
TIGR03074764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 82.26
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 82.0
PF10165 446 Ric8: Guanine nucleotide exchange factor synembryn 81.77
TIGR02604367 Piru_Ver_Nterm putative membrane-bound dehydrogena 81.5
KOG3630 1405 consensus Nuclear pore complex, Nup214/CAN compone 81.16
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 80.8
KOG2063 877 consensus Vacuolar assembly/sorting proteins VPS39 80.18
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-127  Score=995.07  Aligned_cols=719  Identities=42%  Similarity=0.688  Sum_probs=635.0

Q ss_pred             CCCceEeEEeccCCCCEEEEEEcCCCeEEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEE-EEEeCCCCCCCCcE
Q 004329            6 FKEYQLSSELRGHEDDVRGICVCDNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGP-LAWISPNEEFPEGG   84 (760)
Q Consensus         6 ~~~~~l~~~l~gH~~~V~~v~~~~~~~l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~~~~~   84 (760)
                      |+.|++.+++.||+++|+.+++.++..++++|+||++++|+....+   +.....+.+|.+.|.+ ++|.+...    +.
T Consensus         1 ~~~Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~---~l~~~~~~~~~g~i~~~i~y~e~~~----~~   73 (745)
T KOG0301|consen    1 MPQYKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQ---YLETHAFEGPKGFIANSICYAESDK----GR   73 (745)
T ss_pred             CCcceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcc---cccceecccCcceeeccceeccccC----cc
Confidence            5689999999999999999999988889999999999999986333   5566778889999988 88887333    36


Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEeCCCccEEEEEec-CCeEEEEECCCeEEEEECCceeEEeecCCcCeEEEEEeCCCc
Q 004329           85 LVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLD-NEDIVSSSVDSTLKRWRKGKLVEFWEAHNAPIQTVIRIPSGE  163 (760)
Q Consensus        85 l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~v~~v~~~~~~~  163 (760)
                      +++|+.|++|.+|...+..+..++++|+..|||++.. +..+++||||.++++|..+++...+.+|..+||++...|++.
T Consensus        74 l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~  153 (745)
T KOG0301|consen   74 LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENT  153 (745)
T ss_pred             eEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCCc
Confidence            9999999999999999999999999999999999976 666999999999999999999999999999999999999999


Q ss_pred             EEEEECCCcEEEEeCCCceEEeecCCCceEEEEEeCCCeEEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEeCC-Ce
Q 004329          164 IVSGSSDTTIKLWKGKKCAQTFVGHTDTVRGLSVMPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHAS-GL  242 (760)
Q Consensus       164 l~tgs~dg~i~iwd~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~p~-~~  242 (760)
                      ++|||.|++|++|..++..++|.+|++.|+++++.+++.|++|++||.|++|+++|+++.++.+|+..|++++...+ +.
T Consensus       154 ~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~  233 (745)
T KOG0301|consen  154 YVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGL  233 (745)
T ss_pred             EEeccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999995554 49


Q ss_pred             EEEEeCCCcEEEEeCCceEEEEecCC-cEEEEEEccCCcEEEEEcCCcEEEEeCCCCeeechhhhhhhhhcc-cceEEec
Q 004329          243 IVSGSEDRFAKIWKDGVCVQSIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASEL-SQYKLCR  320 (760)
Q Consensus       243 l~s~s~Dg~I~iwd~~~~~~~~~~~~-~v~~v~~~~~g~lvt~~~dg~I~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~~  320 (760)
                      ++++|+|++++||+.+.|.+.+.||. +||++.+.++|++++||+||.||||..+..+.+....++++...+ ++.....
T Consensus       234 Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~As~evl~afd~~v~s~~~~kt  313 (745)
T KOG0301|consen  234 IVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRKASDEVLKAFDAEVVSQISSKT  313 (745)
T ss_pred             EEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecccccCCHHHHHHHHHHHHhhhhhhh
Confidence            99999999999999889999999999 999999999999999999999999999999999999999999998 6777777


Q ss_pred             cccCceeeecCCCCceeeccCCCcceEEEEeeCCceEEEEEeccccceee--ccceeeCCCCCCCcccccCccceEEEEe
Q 004329          321 KKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDK--LGEVVDGPDDGMNRPILDGIQYDYVFDV  398 (760)
Q Consensus       321 ~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~~~~~~~w~~~~~~W~~--~g~~~~~~~~~~~~~~~~g~~yd~vf~v  398 (760)
                      ...|+++..++|+.+.+..+|++||++++++.++.+.+|+|+.++.+|.+  +|+++++.+.+ +|++++|++|||||+|
T Consensus       314 ~~~g~v~~~~lPg~e~L~spGt~dGq~~~Vr~~~~v~ayqws~~e~r~ikdvig~~~~~~~~s-~K~l~EGKeYDyvF~V  392 (745)
T KOG0301|consen  314 EEVGGVKKDDLPGLEILKSPGTRDGQTKVVRDGENVEAYQWSNGEWRWIKDVIGEVVAAQGNS-GKVLHEGKEYDYVFDV  392 (745)
T ss_pred             hhhCccccccCCchhhhcCCCCCCCcEEEEEcCCcceeEEeecccceeeccccccccccCCCC-cceeecccccceEEEE
Confidence            78899999999999999999999999999999999999999988888888  77877666555 5999999999999999


Q ss_pred             ecCCCCCccccCccCCCChHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCC-CCCCCCCCCCCCCCCCccCCCCCCCCC
Q 004329          399 DIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKD-FTLNTSFRDPYTGASAYVPGQPSSMSA  477 (760)
Q Consensus       399 di~~g~~~~~l~yn~~~~p~~~a~~f~~~~~l~~~~~~~i~~fi~~n~~~~~-~~~~~~~~~p~~~~~~y~~~~~~~~~~  477 (760)
                      ||+||+|++|||||++||||+||++||++|+||.+|+||||+||+||+.|.. ....+.|.|||||++||+||++++ .+
T Consensus       393 Di~dGep~~kLPyN~sdnPy~AA~~FL~k~~Lp~sy~dqvv~FI~kNt~g~~l~~~~~~~~dpftg~~ryvp~SSnt-~~  471 (745)
T KOG0301|consen  393 DIGDGEPPYKLPYNVSDNPYQAAQKFLEKNQLPVSYRDQVVKFILKNTDGLSLFAANPSYEDPFTGGGRYVPGSSNT-AA  471 (745)
T ss_pred             EccCCCCceecCcCCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHHhcccccccccCCcccCccCCCcccccccccc-cC
Confidence            9999999999999999999999999999999999999999999999997766 344566999999999999965542 22


Q ss_pred             CCCCC-------Ccc--------eeccCCceeeeccChHHHHHHHHHHHHhhccccccccCCCCHHHHHHHHHHHHHhhc
Q 004329          478 IPAKP-------TFK--------HIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKD  542 (760)
Q Consensus       478 ~~~~~-------~~~--------~~P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~e~~~l~~~~~~l~~  542 (760)
                      .|..|       ...        ++|++.|..|+..|..      +|||+.          +++++++..+++++..++.
T Consensus       472 dpft~~~~yv~~~~n~~~~~~~y~~p~~~~~~~~~~~~~------~~~N~~----------kl~~d~~~~~eeil~li~~  535 (745)
T KOG0301|consen  472 DPFTGSGRYVPSSSNPLTGDSGYSLPVKKQRIFDTLNPK------KELNAP----------KLNPDEINGLEEILSLIKN  535 (745)
T ss_pred             CCCCCccccccccccccccccccccchhheeeccccCch------hhhcCc----------ccCcchhhhHHHHHHhhcC
Confidence            22111       122        7899999999998877      567722          4678899999999998887


Q ss_pred             cCCccCCCCchhhHHHHHHHHhcCCCCCccchhcHhhhhhcCCCchhhhhhcccchhHHHHHHHHhhcCCCCCcchHHHH
Q 004329          543 TSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTG  622 (760)
Q Consensus       543 ~~~~~~~~~~~~~~~~l~~~l~~wp~~~~fP~lDl~Rl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ml~  622 (760)
                      ++.|  ++.....+.+|..++ +||.+++||+||++||++.|+..+.+++. .+.+++++.+++....   ..|+|+||+
T Consensus       536 s~~~--~~e~~~~l~~l~~l~-~wp~~~~fPalDilRl~v~h~~~~s~~~~-~~~~~~~~~~li~~~~---~~~an~ll~  608 (745)
T KOG0301|consen  536 SSHY--SSEVLQSLLALAILL-QWPVEMMFPALDILRLAVKHHSSNSLFCD-REEGQNLVGTLIPILN---ADPANQLLV  608 (745)
T ss_pred             CCCc--cchhHHHHHHHHHHh-cCCHHHhhhHHHHHHHHHhccchhhhhhh-hhhhhHHHHhhhcccc---cchhHHHHH
Confidence            7644  344445555554445 99999999999999999999999999983 4456778888887654   567999999


Q ss_pred             HHHHhhcCCCCccHHHHHhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHH-HHHHhhcccc
Q 004329          623 IRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSA-ALEIAEEESI  701 (760)
Q Consensus       623 lR~l~N~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~-~~~~~~~~~~  701 (760)
                      +|+|||+|+|+.++++++++.+.+++.+......++||+++|+||++||||+.+++.+.+.+..+++.. +.++++ +.+
T Consensus       609 vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e-~~~  687 (745)
T KOG0301|consen  609 VRCLANLFSNPAGRELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLE-PVD  687 (745)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcc-cch
Confidence            999999999999999999999999999999888889999999999999999999998876555555555 545554 667


Q ss_pred             chhHHHHHHHHHhhhcc-hhHHHHHhhccChHHHHHHHhh-cCChhHHHHHHHHHHHh
Q 004329          702 EVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKA-SKETKIAEVGADIELLA  757 (760)
Q Consensus       702 ~~e~~~R~l~alGtl~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ei~~ll  757 (760)
                      |-||.||+|||||||++ +..++++|+.+++..+++++++ ...++.+++++.|+.++
T Consensus       688 d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~il~~~  745 (745)
T KOG0301|consen  688 DLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIARDILSLL  745 (745)
T ss_pred             hHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHhccCchhhHHHHHHHhcC
Confidence            78999999999999999 6699999999999999999988 44567899999877654

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF09070 PFU: PFU (PLAA family ubiquitin binding); InterPro: IPR015155 The PFU (for PLAA family ubiquitin binding domain) is an ubiquitin binding domain with no homology to several known ubiquitin binding domains (e Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG4714 consensus Nucleoporin [Nuclear structure] Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>KOG4714 consensus Nucleoporin [Nuclear structure] Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG2695 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2695 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>PLN00033 photosystem II stability/assembly factor; Provisional Back     alignment and domain information
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus Back     alignment and domain information
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>KOG2444 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2444 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF15390 DUF4613: Domain of unknown function (DUF4613) Back     alignment and domain information
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF15390 DUF4613: Domain of unknown function (DUF4613) Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain Back     alignment and domain information
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PLN00033 photosystem II stability/assembly factor; Provisional Back     alignment and domain information
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>COG3391 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] Back     alignment and domain information
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>COG3391 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2377 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain Back     alignment and domain information
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query760
2ymu_A577 Structure Of A Highly Repetitive Propeller Structur 3e-33
3odt_A313 Crystal Structure Of Wd40 Beta Propeller Domain Of 3e-30
3psp_A425 Crystal Structure Of Pul And Pfu Domain Length = 42 8e-29
3pst_A425 Crystal Structure Of Pul And Pfu(Mutate) Domain Len 2e-28
3l3f_X362 Crystal Structure Of A Pfu-Pul Domain Pair Of Sacch 1e-24
2ovp_B445 Structure Of The Skp1-Fbw7 Complex Length = 445 3e-24
1p22_A435 Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex 2e-19
1vyh_C410 Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 5e-19
2xl2_A334 Wdr5 In Complex With An Rbbp5 Peptide Recruited To 1e-17
2xl2_A334 Wdr5 In Complex With An Rbbp5 Peptide Recruited To 3e-15
3emh_A318 Structural Basis Of Wdr5-Mll Interaction Length = 3 1e-17
3emh_A318 Structural Basis Of Wdr5-Mll Interaction Length = 3 4e-15
2h68_A312 Histone H3 Recognition And Presentation By The Wdr5 2e-17
2h68_A312 Histone H3 Recognition And Presentation By The Wdr5 4e-15
2gnq_A336 Structure Of Wdr5 Length = 336 2e-17
2gnq_A336 Structure Of Wdr5 Length = 336 3e-15
2g99_A308 Structural Basis For The Specific Recognition Of Me 2e-17
2g99_A308 Structural Basis For The Specific Recognition Of Me 5e-15
2h9l_A329 Wdr5delta23 Length = 329 2e-17
2h9l_A329 Wdr5delta23 Length = 329 3e-15
3smr_A312 Crystal Structure Of Human Wd Repeat Domain 5 With 2e-17
3smr_A312 Crystal Structure Of Human Wd Repeat Domain 5 With 5e-15
2h9m_A313 Wdr5 In Complex With Unmodified H3k4 Peptide Length 2e-17
2h9m_A313 Wdr5 In Complex With Unmodified H3k4 Peptide Length 5e-15
3dm0_A694 Maltose Binding Protein Fusion With Rack1 From A. T 2e-17
2g9a_A311 Structural Basis For The Specific Recognition Of Me 2e-17
2g9a_A311 Structural Basis For The Specific Recognition Of Me 5e-15
3psl_A318 Fine-Tuning The Stimulation Of Mll1 Methyltransfera 2e-17
3psl_A318 Fine-Tuning The Stimulation Of Mll1 Methyltransfera 5e-15
4a7j_A318 Symmetric Dimethylation Of H3 Arginine 2 Is A Novel 2e-17
4a7j_A318 Symmetric Dimethylation Of H3 Arginine 2 Is A Novel 5e-15
2h13_A317 Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length 2e-17
3mxx_A315 Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 3e-17
3mxx_A315 Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 1e-14
2cnx_A315 Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. 4e-17
2cnx_A315 Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. 4e-10
2co0_A315 Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs 2e-16
2co0_A315 Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs 4e-10
3n0e_A315 Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 2e-16
3n0e_A315 Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 4e-15
3n0d_A315 Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 3e-16
3n0d_A315 Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 5e-15
3ebb_A304 PlapP97 COMPLEX Length = 304 2e-13
1erj_A393 Crystal Structure Of The C-Terminal Wd40 Domain Of 9e-13
3mks_B464 Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH 2e-12
1nex_B464 Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp 4e-12
3jyv_R313 Structure Of The 40s Rrna And Proteins And PE TRNA 4e-12
3jyv_R313 Structure Of The 40s Rrna And Proteins And PE TRNA 7e-08
1trj_A314 Homology Model Of Yeast Rack1 Protein Fitted Into 1 4e-12
1trj_A314 Homology Model Of Yeast Rack1 Protein Fitted Into 1 8e-08
3rfg_A319 Crystal Structure Of The Yeast Rack1 Dimer In Space 4e-12
3rfg_A319 Crystal Structure Of The Yeast Rack1 Dimer In Space 8e-08
3izb_a319 Localization Of The Small Subunit Ribosomal Protein 4e-12
3izb_a319 Localization Of The Small Subunit Ribosomal Protein 7e-08
3rfh_A319 Crystal Structure Of The Yeast Rack1 Dimer In Space 4e-12
3rfh_A319 Crystal Structure Of The Yeast Rack1 Dimer In Space 8e-08
3zey_7318 High-resolution Cryo-electron Microscopy Structure 4e-12
4aow_A340 Crystal Structure Of The Human Rack1 Protein At A R 6e-12
2zkq_a317 Structure Of A Mammalian Ribosomal 40s Subunit With 8e-12
3frx_A319 Crystal Structure Of The Yeast Orthologue Of Rack1, 1e-11
3frx_A319 Crystal Structure Of The Yeast Orthologue Of Rack1, 7e-08
3iza_B1263 Structure Of An Apoptosome-Procaspase-9 Card Comple 3e-10
2k89_A80 Solution Structure Of A Novel Ubiquitin-Binding Dom 6e-09
3shf_A1256 Crystal Structure Of The R265s Mutant Of Full-Lengt 1e-08
3sfz_A1249 Crystal Structure Of Full-Length Murine Apaf-1 Leng 1e-08
3sfz_A1249 Crystal Structure Of Full-Length Murine Apaf-1 Leng 5e-04
2pbi_B354 The Multifunctional Nature Of Gbeta5RGS9 REVEALED F 4e-08
2xzm_R343 Crystal Structure Of The Eukaryotic 40s Ribosomal S 6e-08
2xzm_R343 Crystal Structure Of The Eukaryotic 40s Ribosomal S 2e-04
3fm0_A345 Crystal Structure Of Wd40 Protein Ciao1 Length = 34 1e-07
1a0r_B340 Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- 2e-07
2bcj_B340 Crystal Structure Of G Protein-coupled Receptor Kin 3e-07
1got_B340 Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer 3e-07
1gg2_B340 G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet 3e-07
3sn6_B351 Crystal Structure Of The Beta2 Adrenergic Receptor- 3e-07
2xyi_A430 Crystal Structure Of Nurf55 In Complex With A H4 Pe 6e-07
3c99_A432 Structural Basis Of Histone H4 Recognition By P55 L 7e-07
2yba_A422 Crystal Structure Of Nurf55 In Complex With Histone 7e-07
3mkq_A814 Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco 7e-06
2ynp_A604 Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 9e-06
2hes_X330 Cytosolic Iron-sulphur Assembly Protein- 1 Length = 1e-05
2hes_X330 Cytosolic Iron-sulphur Assembly Protein- 1 Length = 2e-05
2yno_A310 Yeast Betaprime Cop 1-304h6 Length = 310 1e-05
2ynn_A304 Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 1e-05
3acp_A417 Crystal Structure Of Yeast Rpn14, A Chaperone Of Th 2e-05
3vl1_A420 Crystal Structure Of Yeast Rpn14 Length = 420 2e-05
3gfc_A425 Crystal Structure Of Histone-Binding Protein Rbbp4 3e-05
3cfv_B414 Structural Basis Of The Interaction Of Rbap46RBAP48 4e-05
3cfs_B414 Structural Basis Of The Interaction Of Rbap46RBAP48 6e-05
4ggd_A431 Structural Analysis Of Human Cdc20 Supports Multisi 1e-04
4gga_A420 Structural Analysis Of Human Cdc20 Supports Multi-S 2e-04
2b4e_A402 Crystal Structure Of Murine Coronin-1: Monoclinic F 2e-04
4ggc_A318 Structural Analysis Of Human Cdc20 Supports Multi-S 4e-04
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 Back     alignment and structure 
Iteration: 1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/298 (33%), Positives = 157/298 (52%), Gaps = 23/298 (7%)
Query: 7   KEYQLSSELRGHEDDVRGICVC-DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHT 65
           +  QL   L GH   VRG+    D   IA++S D+TV+ W       R     + L GH+
Sbjct: 86  RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW------NRNGQLLQTLTGHS 139
Query: 66  SFVGPLAWISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTL--DNE 123
           S V  +A  SP+ +     + S   D  V +W+  +G+ +QTL GH   V GV    D +
Sbjct: 140 SSVWGVA-FSPDGQT----IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ 193
Query: 124 DIVSSSVDSTLKRW-RKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLW-KGKK 180
            I S+S D T+K W R G+L++    H++ ++ V   P G+ I S S D T+KLW +  +
Sbjct: 194 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 253
Query: 181 CAQTFVGHTDTVRGLSVMP-GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHA 239
             QT  GH+ +V G++  P G  I SAS D T++LW   GQ+L  + GH++ V+ +    
Sbjct: 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 313
Query: 240 SG-LIVSGSEDRFAKIW-KDGVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVT-RIW 293
            G  I S S+D+  K+W ++G  +Q++  H   VW   F  +G  + + SD  T ++W
Sbjct: 314 DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 Back     alignment and structure
>pdb|3PSP|A Chain A, Crystal Structure Of Pul And Pfu Domain Length = 425 Back     alignment and structure
>pdb|3PST|A Chain A, Crystal Structure Of Pul And Pfu(Mutate) Domain Length = 425 Back     alignment and structure
>pdb|3L3F|X Chain X, Crystal Structure Of A Pfu-Pul Domain Pair Of Saccharomyces Cerevisiae Doa1UFD3 Length = 362 Back     alignment and structure
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 Back     alignment and structure
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 Back     alignment and structure
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 Back     alignment and structure
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 Back     alignment and structure
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 Back     alignment and structure
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 Back     alignment and structure
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 Back     alignment and structure
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 Back     alignment and structure
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 Back     alignment and structure
>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 Back     alignment and structure
>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 Back     alignment and structure
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 Back     alignment and structure
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 Back     alignment and structure
>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 Back     alignment and structure
>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 Back     alignment and structure
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 Back     alignment and structure
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 Back     alignment and structure
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 Back     alignment and structure
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 Back     alignment and structure
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 Back     alignment and structure
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 Back     alignment and structure
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 Back     alignment and structure
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 Back     alignment and structure
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 Back     alignment and structure
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 Back     alignment and structure
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 Back     alignment and structure
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 Back     alignment and structure
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 Back     alignment and structure
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 Back     alignment and structure
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 Back     alignment and structure
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 Back     alignment and structure
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 Back     alignment and structure
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 Back     alignment and structure
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 Back     alignment and structure
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 Back     alignment and structure
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 Back     alignment and structure
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 Back     alignment and structure
>pdb|3EBB|A Chain A, PlapP97 COMPLEX Length = 304 Back     alignment and structure
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 Back     alignment and structure
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 Back     alignment and structure
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 Back     alignment and structure
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 Back     alignment and structure
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 Back     alignment and structure
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 Back     alignment and structure
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 Back     alignment and structure
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 Back     alignment and structure
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 Back     alignment and structure
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 Back     alignment and structure
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 Back     alignment and structure
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 Back     alignment and structure
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 Back     alignment and structure
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 Back     alignment and structure
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 Back     alignment and structure
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 Back     alignment and structure
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 Back     alignment and structure
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 Back     alignment and structure
>pdb|2K89|A Chain A, Solution Structure Of A Novel Ubiquitin-Binding Domain From Human Plaa (Pfuc, Gly76-Pro77 Cis Isomer) Length = 80 Back     alignment and structure
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 Back     alignment and structure
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 Back     alignment and structure
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 Back     alignment and structure
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 Back     alignment and structure
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 Back     alignment and structure
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 Back     alignment and structure
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 Back     alignment and structure
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 Back     alignment and structure
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 Back     alignment and structure
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 Back     alignment and structure
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 Back     alignment and structure
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 Back     alignment and structure
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 Back     alignment and structure
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 Back     alignment and structure
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 Back     alignment and structure
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 Back     alignment and structure
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 Back     alignment and structure
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 Back     alignment and structure
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 Back     alignment and structure
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 Back     alignment and structure
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 Back     alignment and structure
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 Back     alignment and structure
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 Back     alignment and structure
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 Back     alignment and structure
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 Back     alignment and structure
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 Back     alignment and structure
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 Back     alignment and structure
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 Back     alignment and structure
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 Back     alignment and structure
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query760
3pst_A425 Protein DOA1; protein degradation, CDC48, ubiquiti 100.0
3l3f_X362 Protein DOA1, DOA1/UFD3; armadillo-like repeat str 100.0
3ebb_A304 Phospholipase A2-activating protein; armadillo rep 100.0
3gae_A253 Protein DOA1; UFD3, CDC48, armadillo repeat, nucle 100.0
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 100.0
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 100.0
3ow8_A321 WD repeat-containing protein 61; structural genomi 100.0
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 100.0
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 100.0
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 100.0
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 100.0
2ymu_A577 WD-40 repeat protein; unknown function, two domain 100.0
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 100.0
2ymu_A577 WD-40 repeat protein; unknown function, two domain 100.0
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 100.0
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 100.0
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 100.0
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 100.0
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 100.0
4g56_B357 MGC81050 protein; protein arginine methyltransfera 100.0
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 100.0
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 100.0
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 100.0
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 100.0
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 100.0
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 100.0
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 100.0
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 100.0
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 100.0
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 100.0
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 100.0
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 100.0
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 100.0
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 100.0
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 100.0
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 100.0
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 100.0
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 100.0
3ow8_A321 WD repeat-containing protein 61; structural genomi 100.0
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 100.0
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 100.0
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 100.0
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 100.0
4e54_B435 DNA damage-binding protein 2; beta barrel, double 100.0
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 100.0
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 100.0
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 100.0
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 100.0
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 100.0
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 100.0
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 100.0
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 100.0
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 100.0
2pm7_B297 Protein transport protein SEC13, protein transport 100.0
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 100.0
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 100.0
4g56_B357 MGC81050 protein; protein arginine methyltransfera 100.0
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 100.0
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 100.0
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 100.0
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 100.0
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 100.0
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 100.0
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 100.0
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 100.0
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 100.0
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 100.0
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 100.0
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 100.0
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 100.0
2oaj_A902 Protein SNI1; WD40 repeat, beta propeller, endocyt 100.0
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 100.0
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 99.98
2pm7_B297 Protein transport protein SEC13, protein transport 99.98
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 99.98
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 99.97
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 99.97
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 99.97
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 99.97
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 99.97
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 99.97
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 99.97
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 99.97
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 99.97
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 99.97
2oaj_A902 Protein SNI1; WD40 repeat, beta propeller, endocyt 99.97
3jrp_A379 Fusion protein of protein transport protein SEC13 99.97
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 99.97
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 99.97
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 99.96
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 99.96
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 99.96
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 99.96
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 99.96
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 99.96
3jrp_A379 Fusion protein of protein transport protein SEC13 99.96
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 99.96
2j04_A588 TAU60, YPL007P, hypothetical protein YPL007C; beta 99.96
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 99.96
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 99.96
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 99.96
2k89_A80 PLA2P, PLAP, phospholipase A-2-activating protein; 99.96
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 99.96
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 99.96
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 99.96
4e54_B435 DNA damage-binding protein 2; beta barrel, double 99.95
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 99.95
3jro_A753 Fusion protein of protein transport protein SEC13 99.95
2xyi_A430 Probable histone-binding protein CAF1; transcripti 99.95
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 99.95
2xyi_A430 Probable histone-binding protein CAF1; transcripti 99.95
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 99.95
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 99.95
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 99.95
3jro_A753 Fusion protein of protein transport protein SEC13 99.95
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 99.94
2j04_A588 TAU60, YPL007P, hypothetical protein YPL007C; beta 99.94
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 99.94
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 99.94
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 99.94
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 99.93
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 99.93
4gq1_A393 NUP37; propeller, transport protein; 2.40A {Schizo 99.93
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 99.93
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 99.92
2w18_A356 PALB2, fancn, partner and localizer of BRCA2; fanc 99.92
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 99.92
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 99.91
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 99.89
2w18_A356 PALB2, fancn, partner and localizer of BRCA2; fanc 99.89
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 99.88
4gq1_A393 NUP37; propeller, transport protein; 2.40A {Schizo 99.88
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 99.87
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 99.86
1k32_A 1045 Tricorn protease; protein degradation, substrate g 99.85
1k32_A 1045 Tricorn protease; protein degradation, substrate g 99.85
2ecf_A741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 99.81
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 99.8
2z3z_A706 Dipeptidyl aminopeptidase IV; peptidase family S9, 99.8
2ecf_A741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 99.8
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 99.79
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 99.78
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 99.78
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 99.77
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 99.76
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 99.76
2z3z_A706 Dipeptidyl aminopeptidase IV; peptidase family S9, 99.75
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 99.75
1xfd_A723 DIP, dipeptidyl aminopeptidase-like protein 6, dip 99.74
3o4h_A582 Acylamino-acid-releasing enzyme; alpha/beta hydrol 99.74
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 99.74
1xfd_A723 DIP, dipeptidyl aminopeptidase-like protein 6, dip 99.73
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 99.72
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 99.71
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 99.69
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 99.69
2oit_A434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 99.69
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 99.68
2oit_A434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 99.68
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 99.67
1z68_A719 Fibroblast activation protein, alpha subunit; sepr 99.65
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 99.64
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 99.63
1z68_A719 Fibroblast activation protein, alpha subunit; sepr 99.62
3o4h_A582 Acylamino-acid-releasing enzyme; alpha/beta hydrol 99.61
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 99.57
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 99.56
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 99.56
3c5m_A396 Oligogalacturonate lyase; blade-shaped beta-propel 99.54
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 99.53
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 99.53
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 99.53
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 99.52
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 99.5
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 99.5
3azo_A662 Aminopeptidase; POP family, hydrolase; 2.00A {Stre 99.49
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 99.46
4a5s_A740 Dipeptidyl peptidase 4 soluble form; hydrolase, ty 99.46
4a5s_A740 Dipeptidyl peptidase 4 soluble form; hydrolase, ty 99.45
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 99.44
2gop_A347 Trilobed protease; beta propeller, open velcro, hy 99.41
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 99.41
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 99.41
2gop_A347 Trilobed protease; beta propeller, open velcro, hy 99.4
3azo_A662 Aminopeptidase; POP family, hydrolase; 2.00A {Stre 99.4
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 99.4
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 99.4
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 99.36
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 99.35
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 99.35
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 99.33
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 99.32
2bkl_A695 Prolyl endopeptidase; mechanistic study, celiac sp 99.31
3c5m_A396 Oligogalacturonate lyase; blade-shaped beta-propel 99.31
2xdw_A710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 99.3
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 99.29
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 99.27
2xdw_A710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 99.26
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 99.26
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 99.25
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 99.25
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 99.22
2bkl_A695 Prolyl endopeptidase; mechanistic study, celiac sp 99.22
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 99.22
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 99.2
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 99.18
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 99.17
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 99.15
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 99.15
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 99.14
3hrp_A409 Uncharacterized protein; NP_812590.1, structural g 99.13
1yr2_A741 Prolyl oligopeptidase; prolyl endopeptidase, mecha 99.11
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 99.1
3hrp_A409 Uncharacterized protein; NP_812590.1, structural g 99.09
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 99.08
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 99.08
4a2l_A795 BT_4663, two-component system sensor histidine kin 99.07
1xip_A388 Nucleoporin NUP159; beta-propeller, transport prot 99.07
1xip_A388 Nucleoporin NUP159; beta-propeller, transport prot 99.06
2ghs_A326 AGR_C_1268P; regucalcin, structural genomics, join 99.06
1yr2_A741 Prolyl oligopeptidase; prolyl endopeptidase, mecha 99.06
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 99.01
4a2l_A795 BT_4663, two-component system sensor histidine kin 98.99
2ghs_A326 AGR_C_1268P; regucalcin, structural genomics, join 98.99
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 98.99
3v9f_A781 Two-component system sensor histidine kinase/RESP 98.99
3v9f_A781 Two-component system sensor histidine kinase/RESP 98.98
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 98.9
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 98.87
2qe8_A343 Uncharacterized protein; structural genomics, join 98.83
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 98.82
3iuj_A693 Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas 98.81
1mda_H368 Methylamine dehydrogenase (heavy subunit); electro 98.8
1kb0_A677 Quinohemoprotein alcohol dehydrogenase; beta-prope 98.78
1mda_H368 Methylamine dehydrogenase (heavy subunit); electro 98.76
3iuj_A693 Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas 98.69
1yiq_A689 Quinohemoprotein alcohol dehydrogenase; electron t 98.67
1kb0_A677 Quinohemoprotein alcohol dehydrogenase; beta-prope 98.64
1yiq_A689 Quinohemoprotein alcohol dehydrogenase; electron t 98.59
2qe8_A343 Uncharacterized protein; structural genomics, join 98.57
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 98.55
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 98.52
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 98.45
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 98.37
2fp8_A322 Strictosidine synthase; six bladed beta propeller 98.31
1kv9_A668 Type II quinohemoprotein alcohol dehydrogenase; el 98.31
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 98.21
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 98.2
2ad6_A571 Methanol dehydrogenase subunit 1; PQQ configuratio 98.17
1w6s_A599 Methanol dehydrogenase subunit 1; anisotropic, ele 98.1
2fp8_A322 Strictosidine synthase; six bladed beta propeller 98.09
1kv9_A668 Type II quinohemoprotein alcohol dehydrogenase; el 98.05
2p4o_A306 Hypothetical protein; putative lactonase, structur 97.99
2ece_A462 462AA long hypothetical selenium-binding protein; 97.98
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 97.96
2ad6_A571 Methanol dehydrogenase subunit 1; PQQ configuratio 97.94
3ott_A758 Two-component system sensor histidine kinase; beta 97.94
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 97.93
1flg_A582 Protein (quinoprotein ethanol dehydrogenase); supe 97.9
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 97.86
1flg_A582 Protein (quinoprotein ethanol dehydrogenase); supe 97.85
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 97.83
2ece_A462 462AA long hypothetical selenium-binding protein; 97.83
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 97.79
1w6s_A599 Methanol dehydrogenase subunit 1; anisotropic, ele 97.78
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 97.78
3ott_A758 Two-component system sensor histidine kinase; beta 97.76
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 97.71
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 97.67
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 97.66
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 97.66
3v65_B386 Low-density lipoprotein receptor-related protein; 97.66
1ijq_A316 LDL receptor, low-density lipoprotein receptor; be 97.62
1ijq_A316 LDL receptor, low-density lipoprotein receptor; be 97.54
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 97.47
3v65_B386 Low-density lipoprotein receptor-related protein; 97.45
3qqz_A255 Putative uncharacterized protein YJIK; MCSG, PSI-2 97.44
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 97.44
3tc9_A430 Hypothetical hydrolase; 6-bladed beta-propeller, i 97.43
2p4o_A306 Hypothetical protein; putative lactonase, structur 97.35
3p5b_L400 Low density lipoprotein receptor variant; B-propel 97.33
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 97.31
3sov_A318 LRP-6, low-density lipoprotein receptor-related pr 97.28
2xzh_A365 Clathrin heavy chain 1; endocytosis, endocytosis i 97.14
3sov_A318 LRP-6, low-density lipoprotein receptor-related pr 97.12
3qqz_A255 Putative uncharacterized protein YJIK; MCSG, PSI-2 97.12
4hw6_A433 Hypothetical protein, IPT/TIG domain protein; puta 97.1
2ism_A352 Putative oxidoreductase; BL41XU spring-8, bladed b 97.08
3p5b_L400 Low density lipoprotein receptor variant; B-propel 97.08
4hw6_A433 Hypothetical protein, IPT/TIG domain protein; puta 96.91
2xe4_A751 Oligopeptidase B; hydrolase-inhibitor complex, hyd 96.9
3tc9_A430 Hypothetical hydrolase; 6-bladed beta-propeller, i 96.81
2p9w_A334 MAL S 1 allergenic protein; beta propeller; 1.35A 96.79
3m0c_C791 LDL receptor, low-density lipoprotein receptor; pr 96.78
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 96.74
3ei3_A1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 96.7
3m0c_C791 LDL receptor, low-density lipoprotein receptor; pr 96.6
4a0p_A628 LRP6, LRP-6, low-density lipoprotein receptor-rela 96.58
2xe4_A751 Oligopeptidase B; hydrolase-inhibitor complex, hyd 96.56
3kya_A496 Putative phosphatase; structural genomics, joint c 96.53
3sre_A355 PON1, serum paraoxonase; directed evolution, 6-bla 96.39
2ism_A352 Putative oxidoreductase; BL41XU spring-8, bladed b 96.32
4a0p_A628 LRP6, LRP-6, low-density lipoprotein receptor-rela 96.29
3ei3_A1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 96.24
3amr_A355 3-phytase; beta-propeller, phytate, MYO-inositol h 96.23
1bpo_A494 Protein (clathrin); clathrin endocytosis beta-prop 96.02
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 95.87
2p9w_A334 MAL S 1 allergenic protein; beta propeller; 1.35A 95.84
3a9g_A354 Putative uncharacterized protein; PQQ dependent de 95.72
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 95.71
3s94_A619 LRP-6, low-density lipoprotein receptor-related pr 95.67
3amr_A355 3-phytase; beta-propeller, phytate, MYO-inositol h 95.61
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 95.52
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 95.33
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 95.29
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 95.07
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 94.78
3a9g_A354 Putative uncharacterized protein; PQQ dependent de 94.76
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 94.74
3kya_A496 Putative phosphatase; structural genomics, joint c 94.7
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 94.6
1tl2_A236 L10, protein (tachylectin-2); animal lectin, horse 94.5
3sre_A355 PON1, serum paraoxonase; directed evolution, 6-bla 94.4
3pbp_A452 Nucleoporin NUP82; beta-propeller, mRNA export, mR 94.17
3pbp_A452 Nucleoporin NUP82; beta-propeller, mRNA export, mR 93.78
2be1_A339 Serine/threonine-protein kinase/endoribonuclease; 93.73
3s94_A619 LRP-6, low-density lipoprotein receptor-related pr 93.18
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 92.7
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 92.27
1tl2_A236 L10, protein (tachylectin-2); animal lectin, horse 92.18
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 91.34
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 91.28
1cru_A454 Protein (soluble quinoprotein glucose dehydrogena; 90.97
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 88.74
3das_A347 Putative oxidoreductase; aldose sugar dehydrogenas 88.59
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 88.19
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 88.12
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 87.72
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 87.5
2be1_A339 Serine/threonine-protein kinase/endoribonuclease; 87.37
1bpo_A494 Protein (clathrin); clathrin endocytosis beta-prop 86.81
2g8s_A353 Glucose/sorbosone dehydrogenases; bladed beta-prop 86.76
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 86.49
2xzh_A365 Clathrin heavy chain 1; endocytosis, endocytosis i 86.17
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 86.17
2g8s_A353 Glucose/sorbosone dehydrogenases; bladed beta-prop 85.49
3b7f_A394 Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop 85.14
3b7f_A394 Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop 85.06
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 84.94
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 84.89
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 83.83
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 83.43
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 83.34
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 83.33
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 81.53
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 81.22
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A Back     alignment and structure
Probab=100.00  E-value=4.2e-79  Score=635.14  Aligned_cols=383  Identities=26%  Similarity=0.420  Sum_probs=249.3

Q ss_pred             eEEeccccCceeeecCCCCceeeccCCCcceEEEEeeCC-ceEEEEEeccccceeeccceeeCC-CCCCCcccccCccce
Q 004329          316 YKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGD-NGVAYSWDMKEQKWDKLGEVVDGP-DDGMNRPILDGIQYD  393 (760)
Q Consensus       316 ~~~~~~~~g~i~~~~l~~~~~l~~~g~~~g~~~~v~~~~-~~~~~~w~~~~~~W~~~g~~~~~~-~~~~~~~~~~g~~yd  393 (760)
                      +.+..++. +++   +||.+.+..+|++||+++++++++ ...+|+|+  .++|.++|+|+++. +++.+|+.|+|++||
T Consensus        23 sai~~q~v-~i~---lp~~e~l~~~G~~~Gq~~~v~~~~g~v~ay~ws--~~~W~~iG~Vv~~~~~~~~~k~~~~Gk~YD   96 (425)
T 3pst_A           23 SMTGGQQM-GRG---SSPYEILQSPGRKEGQIVVVKSPQGTIEAHQFS--NSSWKKVGDVVGAGATGNDKKIEFEGKTYD   96 (425)
T ss_dssp             ---------------------------------------------------------------------CCEEETTEEES
T ss_pred             cccchhhc-CCC---CCCHHHhcCCCCCCCeEEEEECCCCCEEEEEEc--CCceeEEeEEecCCCCCCCCceeecCcccc
Confidence            44455555 343   999999999999999999999865 44599999  58999999999863 445689999999999


Q ss_pred             EEEEeecCCCCCccccCccCCCChHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccCCCCC
Q 004329          394 YVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPS  473 (760)
Q Consensus       394 ~vf~vdi~~g~~~~~l~yn~~~~p~~~a~~f~~~~~l~~~~~~~i~~fi~~n~~~~~~~~~~~~~~p~~~~~~y~~~~~~  473 (760)
                      |||+|||++|+|++|||||.+||||++||+||++|+||++|+|||++||++|+++++.+      +|+++   +.|.+. 
T Consensus        97 yvf~Vdi~~g~p~lkLpyN~~~np~~~A~~Fi~~~~L~~~y~~qi~~FI~~N~~~~~~~------~p~~~---~~~~~~-  166 (425)
T 3pst_A           97 YVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPMSYRDQVVQLILKNTNGISLD------QPNDN---ASSSAV-  166 (425)
T ss_dssp             EEEEECCSTTCCCEEEEECTTCCHHHHHHHHHHHHTCCGGGHHHHHHHHHHHC---------------------------
T ss_pred             eEEEEEcCCCCccccCCccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcccC------CCCCC---CCCCCC-
Confidence            99999999999999999999999999999999999999999999999999999987543      35543   223221 


Q ss_pred             CCCCCCCCCCcceeccCCceeeeccChHHHHHHHHHHHHhhccccccccCCCCHHHHHHHHHHHHHhhccCCccCCCCch
Q 004329          474 SMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFAD  553 (760)
Q Consensus       474 ~~~~~~~~~~~~~~P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~e~~~l~~~~~~l~~~~~~~~~~~~~  553 (760)
                         +.++.+.++|||+++|++|+++|+++|++||+|||++.        .+|+|+|+..|.+++..++...        .
T Consensus       167 ---~~~~~~~~k~lP~~~yl~f~~~n~~~i~~kl~efN~~~--------~~ls~~el~~l~~~l~~~~~~~--------~  227 (425)
T 3pst_A          167 ---SPSKTSVMKVLPVKQYLIMENYNPDTILNGIVKINSNE--------KTFDDEILAQIGGALHDIDESW--------E  227 (425)
T ss_dssp             ---------CCSSCCCCCCCCCCCCCHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHTSGGGSH--------H
T ss_pred             ---CcccCCCCcccCccceeeeecCCHHHHHHHHHHhcccc--------cCCCHHHHHHHHHHhccccccH--------H
Confidence               12244568999999999999999999999999999872        4799999999999876443111        1


Q ss_pred             hhHHHHHHHHhcCCCCCccchhcHhhhhhcCCCchhhhhhcccchhHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCCC
Q 004329          554 VDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNS  633 (760)
Q Consensus       554 ~~~~~l~~~l~~wp~~~~fP~lDl~Rl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ml~lR~l~N~f~~~  633 (760)
                      ..+..+.+++.+||  .+||+|||+||+++||++++.+           ..++..+.. +..++|+||++|++||||.++
T Consensus       228 ~l~~~~~kil~~WP--~~FPaLDLLRl~v~~p~~~~~l-----------~~li~~~l~-~~~~an~MltlR~laNlF~~~  293 (425)
T 3pst_A          228 LLLSFANTIRSNWE--IKTPAYDIVRLIVKKLPYSSDI-----------KDYIEEGLG-NKNITLTMLTVRILVNCFNNE  293 (425)
T ss_dssp             HHHHHHHHHHHHCS--CCHHHHHHHHHHGGGCSCGGGG-----------HHHHHHHTT-CSSHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhCC--cccHHHHHHHHHHcCCchHHHH-----------HHHHHHhcC-CCChhHHHHHHHHHHHhcCCc
Confidence            23344568899999  5999999999999999986643           345555544 446789999999999999999


Q ss_pred             cc-HHHHHhh--HHHHHHHhhhcc----CCCCchhHHHHHHHHHHHHhhhhhcCCchhhhhHHHHHHHHhh-----c--c
Q 004329          634 SW-YSWLQKN--RSEILDAFSSCY----SSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAE-----E--E  699 (760)
Q Consensus       634 ~~-~~~~~~~--~~~i~~~~~~~~----~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ll~~~~~~~~-----~--~  699 (760)
                      .+ ++++..+  ++.+++.+...+    ...+||+|+|+|||+||||+++++.+.+   .++++.+.+++.     .  +
T Consensus       294 ~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~---~el~~~l~e~l~~~~g~~E~~  370 (425)
T 3pst_A          294 NWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEY  370 (425)
T ss_dssp             TTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC---TTHHHHHHHHHHHTTTTSHHH
T ss_pred             chHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhccccccc
Confidence            95 5555333  677888776543    3358999999999999999999986643   455555666555     2  2


Q ss_pred             ccchhHHHHHHHHHhhhcc-hhHHHHHhhccChHHHHHHHhh--cCChhHHHHHHHH
Q 004329          700 SIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKA--SKETKIAEVGADI  753 (760)
Q Consensus       700 ~~~~e~~~R~l~alGtl~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ei  753 (760)
                      ++|+||+||+|||||||++ +++++++++..   .+++++++  +.|+||+++++||
T Consensus       371 ~~d~EA~yRlLVALGtLv~~~~~~~~~a~~~---~~~~~~~~~~~~e~R~~~v~~ei  424 (425)
T 3pst_A          371 QECEEAAYRLTVAYGNLATVEPTLRQFANSV---TWLANIKRSYGNVPRFKDIFDDL  424 (425)
T ss_dssp             HTSHHHHHHHHHHHHHHHHHCHHHHHHHTTC---HHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcCHHHHHHhcCH---HHHHHHHHhcccchHHHHHHHhc
Confidence            4689999999999999999 77899988854   46666654  5789999999998
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} Back     alignment and structure
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Back     alignment and structure
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Back     alignment and structure
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Back     alignment and structure
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Back     alignment and structure
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Back     alignment and structure
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Back     alignment and structure
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 Back     alignment and structure
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Back     alignment and structure
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Back     alignment and structure
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Back     alignment and structure
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} Back     alignment and structure
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} Back     alignment and structure
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} Back     alignment and structure
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Back     alignment and structure
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Back     alignment and structure
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Back     alignment and structure
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Back     alignment and structure
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Back     alignment and structure
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Back     alignment and structure
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A Back     alignment and structure
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} Back     alignment and structure
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* Back     alignment and structure
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* Back     alignment and structure
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Back     alignment and structure
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A Back     alignment and structure
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A Back     alignment and structure
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 Back     alignment and structure
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} Back     alignment and structure
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} Back     alignment and structure
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 760
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 2e-28
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 3e-23
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 1e-21
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 4e-17
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 1e-14
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 7e-05
d2ovrb2342 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing 5e-22
d2ovrb2342 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing 1e-12
d2ovrb2342 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing 3e-04
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 9e-22
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 4e-17
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 7e-16
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 5e-06
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 7e-04
d1sq9a_393 b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake 1e-19
d1sq9a_393 b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake 5e-11
d1sq9a_393 b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake 1e-05
d1sq9a_393 b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake 6e-05
d1p22a2293 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be 1e-17
d1p22a2293 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be 8e-15
d1p22a2293 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be 2e-04
d1gxra_337 b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum 2e-17
d1gxra_337 b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum 3e-06
d1gxra_337 b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum 0.001
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 1e-15
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 6e-14
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 1e-11
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 9e-04
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 0.002
d1nexb2355 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' 1e-12
d1nexb2355 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' 6e-08
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 1e-12
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 9e-09
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 3e-08
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 6e-04
d1pgua2287 b.69.4.1 (A:327-613) Actin interacting protein 1 { 1e-12
d1pgua2287 b.69.4.1 (A:327-613) Actin interacting protein 1 { 2e-05
d1pgua2287 b.69.4.1 (A:327-613) Actin interacting protein 1 { 3e-04
d1pgua2287 b.69.4.1 (A:327-613) Actin interacting protein 1 { 0.002
d1pgua2287 b.69.4.1 (A:327-613) Actin interacting protein 1 { 0.002
d1nr0a2299 b.69.4.1 (A:313-611) Actin interacting protein 1 { 4e-11
d1nr0a2299 b.69.4.1 (A:313-611) Actin interacting protein 1 { 2e-06
d1nr0a2299 b.69.4.1 (A:313-611) Actin interacting protein 1 { 6e-06
d1nr0a2299 b.69.4.1 (A:313-611) Actin interacting protein 1 { 4e-05
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 2e-10
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 4e-07
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 1e-05
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 5e-05
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 8e-05
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 0.004
d1jmxb_346 b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase 9e-10
d1jmxb_346 b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase 2e-06
d1pbyb_337 b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase 2e-08
d1pbyb_337 b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase 9e-04
d1k32a3360 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar 2e-08
d1k32a3360 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar 1e-07
d1k32a3360 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar 5e-07
d1k32a3360 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar 6e-05
d1nr0a1311 b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne 9e-08
d1nr0a1311 b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne 4e-06
d1nr0a1311 b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne 9e-05
d1nr0a1311 b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne 1e-04
d1pgua1325 b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba 2e-07
d1pgua1325 b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba 2e-07
d1pgua1325 b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba 3e-06
d1pgua1325 b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba 4e-05
d2bbkh_355 b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { 2e-04
d1qksa2432 b.70.2.1 (A:136-567) C-terminal (heme d1) domain o 0.003
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (285), Expect = 2e-28
 Identities = 70/312 (22%), Positives = 125/312 (40%), Gaps = 41/312 (13%)

Query: 15  LRGHEDDVRGICVC-DNVGIATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAW 73
           L GH   V  +        + ++S D T++ W  +  D       + L GHT  V  +++
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-----RTLKGHTDSVQDISF 67

Query: 74  ISPNEEFPEGGLVSGGMDTMVLVWDLGSGEKVQTLQGHKLQVTGVTLDNEDIVSSSVDST 133
               +        S  M   +  +      +      H +    +  + + IVS+S D T
Sbjct: 68  DHSGKLLAS---CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124

Query: 134 --LKRWRKGKLVEFWEAHNAPIQTVIRIPSGE-IVSGSSDTTIKLW--KGKKCAQTFVGH 188
             +   + G  V+ +  H   ++ V     G  I S S+D T+++W    K+C      H
Sbjct: 125 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 184

Query: 189 TDTVRGLSVM---------------------PGVGIISASHDCTIRLWAL-TGQVLMEMV 226
              V  +S                       PG  ++S S D TI++W + TG  LM +V
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244

Query: 227 GHTAIVYSIDSHASG-LIVSGSEDRFAKIW--KDGVCVQSIE-HPGCVWDAKFLENGD-I 281
           GH   V  +  H+ G  I+S ++D+  ++W  K+  C++++  H   V    F +    +
Sbjct: 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304

Query: 282 VTACSDGVTRIW 293
           VT   D   ++W
Sbjct: 305 VTGSVDQTVKVW 316
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query760
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 100.0
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 100.0
d1tbga_340 beta1-subunit of the signal-transducing G protein 100.0
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 100.0
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 100.0
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 100.0
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 100.0
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 99.98
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.98
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 99.97
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 99.97
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 99.97
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 99.97
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 99.97
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 99.97
d1tbga_340 beta1-subunit of the signal-transducing G protein 99.96
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 99.96
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 99.96
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 99.96
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.96
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 99.96
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 99.95
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 99.94
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 99.94
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 99.92
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 99.92
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 99.91
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 99.91
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 99.89
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.88
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.85
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.85
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 99.84
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.79
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.77
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 99.74
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 99.74
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.72
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 99.71
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 99.65
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 99.62
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 99.59
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 99.57
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 99.53
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 99.51
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 99.51
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 99.27
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 99.25
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 99.03
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 98.86
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 98.77
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 98.69
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 98.68
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 98.6
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 98.52
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 98.52
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 98.47
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 98.42
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 98.41
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 98.39
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 98.36
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 98.28
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 98.27
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 98.2
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 98.13
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 98.09
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 97.97
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 97.84
d1npea_263 Nidogen {Mouse (Mus musculus) [TaxId: 10090]} 97.46
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 97.37
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 97.36
d1utca2327 Clathrin heavy-chain terminal domain {Rat (Rattus 96.35
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 96.14
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 95.94
d1ijqa1266 Low density lipoprotein (LDL) receptor {Human (Hom 95.46
d1npea_263 Nidogen {Mouse (Mus musculus) [TaxId: 10090]} 95.26
d2ad6a1571 Methanol dehydrogenase, heavy chain {Methylophilus 94.77
d1kb0a2573 Quinoprotein alcohol dehydrogenase, N-terminal dom 94.52
d1kv9a2560 Quinoprotein alcohol dehydrogenase, N-terminal dom 94.31
d2ad6a1571 Methanol dehydrogenase, heavy chain {Methylophilus 94.23
d1kb0a2573 Quinoprotein alcohol dehydrogenase, N-terminal dom 94.22
d1kv9a2560 Quinoprotein alcohol dehydrogenase, N-terminal dom 93.87
d1utca2327 Clathrin heavy-chain terminal domain {Rat (Rattus 93.49
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 93.45
d1ijqa1266 Low density lipoprotein (LDL) receptor {Human (Hom 93.03
d1w6sa_596 Methanol dehydrogenase, heavy chain {Methylobacter 92.68
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 92.04
d1w6sa_596 Methanol dehydrogenase, heavy chain {Methylobacter 91.55
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 90.02
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 86.11
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 85.74
d1v04a_340 Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory 83.01
d1wa5b_ 503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 82.7
d1flga_582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 82.39
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 82.09
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=314.42  Aligned_cols=280  Identities=16%  Similarity=0.280  Sum_probs=243.4

Q ss_pred             ceEeEEeccCCCCEEEEEEcCCCe-EEEEECCCeEEEEeCCCCCCccceeeeEeeCCCCCeEEEEEeCCCCCCCCcEEEE
Q 004329            9 YQLSSELRGHEDDVRGICVCDNVG-IATSSRDRTVRFWSLDPSDKRKYHSSKILLGHTSFVGPLAWISPNEEFPEGGLVS   87 (760)
Q Consensus         9 ~~l~~~l~gH~~~V~~v~~~~~~~-l~tgs~Dg~i~iWd~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~l~s   87 (760)
                      .+.++++ +|...|+|++|+|+++ |+||+ ||.|+|||+.++............+|.+.|.+++|+|++.     +|++
T Consensus        42 ~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~-----~l~s  114 (337)
T d1gxra_          42 ARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-----TLIV  114 (337)
T ss_dssp             EEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS-----EEEE
T ss_pred             ceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC-----EEEE
Confidence            3556666 7999999999999999 88877 8999999998665444444445568999999999999987     6999


Q ss_pred             EeCCCeEEEEECCCC--ceEEEEeCCCccEEEEEec--CCeEEEEECCCeEEEEECC--ceeEEeecCCcCeEEEEEeCC
Q 004329           88 GGMDTMVLVWDLGSG--EKVQTLQGHKLQVTGVTLD--NEDIVSSSVDSTLKRWRKG--KLVEFWEAHNAPIQTVIRIPS  161 (760)
Q Consensus        88 gs~dg~I~vwd~~~~--~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~v~~v~~~~~  161 (760)
                      |+.||.|++||+...  +....+..|...+.++.++  +..+++++.|+.+++|+..  +.......|...|.+++++++
T Consensus       115 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  194 (337)
T d1gxra_         115 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND  194 (337)
T ss_dssp             EESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999998754  4567788999999999997  5569999999999999874  566777889999999999998


Q ss_pred             Cc-EEEEECCCcEEEEeCCCceE-EeecCCCceEEEEEeCCCe-EEEEeCCCeEEEEecCCceEEEeecCCCcEEEEEEe
Q 004329          162 GE-IVSGSSDTTIKLWKGKKCAQ-TFVGHTDTVRGLSVMPGVG-IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSH  238 (760)
Q Consensus       162 ~~-l~tgs~dg~i~iwd~~~~~~-~~~~h~~~V~~l~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~v~~v~~~  238 (760)
                      +. +++|+.|+.+++||.++... ....|...|.+++|+|++. +++++.|+.+++||++.........|...|.+++|+
T Consensus       195 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s  274 (337)
T d1gxra_         195 GTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA  274 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEEC
T ss_pred             ccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEEC
Confidence            87 78999999999999765433 2345889999999999766 899999999999999877777888999999999999


Q ss_pred             CCC-eEEEEeCCCcEEEEe--CCceEEEEecCCcEEEEEEccCCc-EEEEEcCCcEEEEeC
Q 004329          239 ASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTV  295 (760)
Q Consensus       239 p~~-~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~v~~v~~~~~g~-lvt~~~dg~I~vw~~  295 (760)
                      |++ +|++++.||.|++||  .++.+..+.|.+.|++++|+|+++ +++|+.||.|+|||+
T Consensus       275 ~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         275 YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            999 999999999999999  778888889999999999999998 889999999999996
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure