Citrus Sinensis ID: 004376

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------76
MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVSFGDYACEFKYLKVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
ccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHccccHHHHcHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEccccccEEEEEEEEcccEEEEEcHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccEEEEcccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccEEEcc
ccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHEccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHccccccHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEcccccEEEEEEHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccEEEcc
mtmnerktIDLEQGWEFMQKGITKLKNIleglpepqfssedYMMLYTTIYNmctqkpphdysqQLYDKYRESFEEYISstvlpsirekHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIarrslpplnevgltCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIgmgqmdyyENDFETAMLKDTAAYYsrkasnwiledscpdyMLKAEECLKREKDRVshylhsssepklLEKVQHELLSVYANQLLEkehsgchallrddkvEDLSRMFRLFskiprgldpvsnIFKQHVTAEGTALVKLAEDAAsnkkaekrdvvGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCnkgvagssSAELLATFCDNILkkggseklsDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLlfdksanddhERSILTKLKqqcggqftskmegmvsfGDYACEFKYLKVTDLTLARENQTSFEEYLsnnpnanpgidLTVTVLTtgfwpsyksfdlnlpaEMVKCVEVFREFYQTktkhrkltwIYSLGTcnllgkfesrtTELIVTTYQASALLLFnssdrlsysEIMTQLNLSDDDVVRLLHSLSCAKYkilnkepntktisptdhfefnskftdkmrrikiplppvdekkkvIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRdylerdksnpnmfryla
mtmnerktidleqgWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISstvlpsirekHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLidqeregeqidRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFskiprgldpvSNIFKQHVTAEGTALVKLAEDAasnkkaekrdvvglqeqVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLfdksanddherSILTklkqqcggqfTSKMEGMVSFGDYACEFKYLKVTDLTLARENQTSFEEYlsnnpnanpGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQtktkhrkltwiySLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAkykilnkepntktisptdhfefnskftdkmrrikiplppvdekkkviedvdkdrryAIDASIVRIMKSRKVLGHQQLVLECVEQlgrmfkpdfkaIKKRIEDlitrdylerdksnpnmfryla
MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVSFGDYACEFKYLKVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPvdekkkviedvdkdRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
**********LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKR*******Y********LLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLA************DVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGG***L*DEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSA******SILTKLKQQCGGQFTSKMEGMVSFGDYACEFKYLKVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE**********HFEFNSKFTDKMRRIKIPL*******KVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYL**************
******K****EQGWEFMQKGITKLKNILEG**E*****EDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKL**************VVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKK***********EEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVSFGDYACEFKYLKVTDLTLARENQTSF*************IDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN*******ISPTDHFEFNSKFTDKMRRIK******************DRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVSFGDYACEFKYLKVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
******KTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAAS**********GLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVSFGDYACEFKYLKVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
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MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLxxxxxxxxxxxxxxxxxxxxxVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVSFGDYACEFKYLKVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query758 2.2.26 [Sep-21-2011]
Q94AH6738 Cullin-1 OS=Arabidopsis t yes no 0.972 0.998 0.819 0.0
Q9SRZ0742 Cullin-2 OS=Arabidopsis t no no 0.967 0.987 0.649 0.0
P0CH31721 Putative cullin-like prot no no 0.935 0.983 0.648 0.0
Q54NZ5769 Cullin-3 OS=Dictyostelium yes no 0.918 0.905 0.345 1e-124
Q9XIE9374 Putative cullin-like prot no no 0.461 0.935 0.582 1e-123
Q13619759 Cullin-4A OS=Homo sapiens yes no 0.878 0.877 0.350 1e-115
Q9ZVH4732 Cullin-3A OS=Arabidopsis no no 0.920 0.953 0.335 1e-114
Q9C9L0732 Cullin-3B OS=Arabidopsis no no 0.920 0.953 0.330 1e-111
A2A432970 Cullin-4B OS=Mus musculus yes no 0.906 0.708 0.343 1e-109
Q6DE95768 Cullin-3-A OS=Xenopus lae N/A no 0.940 0.928 0.307 1e-108
>sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1306 bits (3381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/754 (81%), Positives = 687/754 (91%), Gaps = 17/754 (2%)

Query: 5   ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQ 64
           ERKTIDLEQGW++MQ GITKLK ILEGL EP F SE YMMLYTTIYNMCTQKPPHDYSQQ
Sbjct: 2   ERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQKPPHDYSQQ 61

Query: 65  LYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIA 124
           LYDKYRE+FEEYI+STVLP++REKHDEFMLREL KRWSNHKVMVRWLSRFF+YLDRYFIA
Sbjct: 62  LYDKYREAFEEYINSTVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFIA 121

Query: 125 RRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIG 184
           RRSLPPLNEVGLTCFRDLVY EL+ KV+ AVI L+D+EREGEQIDRALLKNVLDI+VEIG
Sbjct: 122 RRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIYVEIG 181

Query: 185 MGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHS 244
           MGQM+ YE DFE+ ML+DT++YYSRKAS+WI EDSCPDYMLK+EECLK+E++RV+HYLHS
Sbjct: 182 MGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAHYLHS 241

Query: 245 SSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVS 304
           SSEPKL+EKVQHELL V+A+QLLEKEHSGC ALLRDDKV+DLSRM+RL+ KI RGL+PV+
Sbjct: 242 SSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPVA 301

Query: 305 NIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQ 364
           NIFKQHVTAEG ALV+ AED A+N+ A   +   +QEQV +RKVIELHDKY+ YV +CFQ
Sbjct: 302 NIFKQHVTAEGNALVQQAEDTATNQVA---NTASVQEQVLIRKVIELHDKYMVYVTECFQ 358

Query: 365 NHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVK 424
           NHTLFHK+LKEAFE+FCNK VAGSSSAELLATFCDNILKKGGSEKLSDEAIE+ LEKVVK
Sbjct: 359 NHTLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVK 418

Query: 425 LLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVSFG 484
           LLAYISDKDLFAEFYRKKLARRLLFD+SANDDHERSILTKLKQQCGGQFTSKMEGM    
Sbjct: 419 LLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGM---- 474

Query: 485 DYACEFKYLKVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNL 544
                     VTDLTLARENQ SFE+YL +NP ANPGIDLTVTVLTTGFWPSYKSFD+NL
Sbjct: 475 ----------VTDLTLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDINL 524

Query: 545 PAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFN 604
           P+EM+KCVEVF+ FY+TKTKHRKLTWIYSLGTC++ GKF+ +  ELIV+TYQA+ LLLFN
Sbjct: 525 PSEMIKCVEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFN 584

Query: 605 SSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDK 664
           ++D+LSY+EI+ QLNLS +D+VRLLHSLSCAKYKIL KEPNTKT+S  D FEFNSKFTD+
Sbjct: 585 TTDKLSYTEILAQLNLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDR 644

Query: 665 MRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMF 724
           MRRIKIPLPPVDE+KKV+EDVDKDRRYAIDA+IVRIMKSRKVLGHQQLV ECVEQL RMF
Sbjct: 645 MRRIKIPLPPVDERKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMF 704

Query: 725 KPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 758
           KPD KAIKKR+EDLITRDYLERDK NPNMFRYLA
Sbjct: 705 KPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Regulator of mitotic processes which plays a role during gametogenesis and embryogenesis. Together with SKP1, RBX1 and a F-box protein, it forms a SCF complex. The functional specificity of this complex depends of the type of F-box protein. SCF(UFO) is implicated in floral organ development. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1/ZTL), SCF(ADO2/LKP2), SCF(ADO3/FKF1) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SRZ0|CUL2_ARATH Cullin-2 OS=Arabidopsis thaliana GN=CUL2 PE=1 SV=1 Back     alignment and function description
>sp|P0CH31|CLL1_ARATH Putative cullin-like protein 1 OS=Arabidopsis thaliana GN=At1g43140 PE=3 SV=1 Back     alignment and function description
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1 Back     alignment and function description
>sp|Q9XIE9|CLL2_ARATH Putative cullin-like protein 2 OS=Arabidopsis thaliana GN=At1g59790 PE=3 SV=2 Back     alignment and function description
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3 Back     alignment and function description
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1 Back     alignment and function description
>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1 Back     alignment and function description
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1 Back     alignment and function description
>sp|Q6DE95|CUL3A_XENLA Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query758
255551707744 Cullin-1, putative [Ricinus communis] gi 0.981 1.0 0.951 0.0
224123204744 predicted protein [Populus trichocarpa] 0.981 1.0 0.945 0.0
449450670744 PREDICTED: cullin-1-like [Cucumis sativu 0.981 1.0 0.939 0.0
224107343742 predicted protein [Populus trichocarpa] 0.978 1.0 0.940 0.0
225432272744 PREDICTED: cullin-1 isoform 1 [Vitis vin 0.981 1.0 0.937 0.0
386688470744 cullin 1-like protein B [Prunus avium] 0.981 1.0 0.926 0.0
356563944744 PREDICTED: cullin-1-like isoform 1 [Glyc 0.981 1.0 0.922 0.0
356556122744 PREDICTED: cullin-1-like [Glycine max] 0.981 1.0 0.920 0.0
356529771744 PREDICTED: cullin-1-like [Glycine max] 0.981 1.0 0.919 0.0
356521879744 PREDICTED: cullin-1-like isoform 1 [Glyc 0.981 1.0 0.918 0.0
>gi|255551707|ref|XP_002516899.1| Cullin-1, putative [Ricinus communis] gi|223543987|gb|EEF45513.1| Cullin-1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1496 bits (3872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 721/758 (95%), Positives = 736/758 (97%), Gaps = 14/758 (1%)

Query: 1   MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHD 60
           MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHD
Sbjct: 1   MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHD 60

Query: 61  YSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDR 120
           YSQQLYDKYRESFEEYI+STVLPS+REKHDEFMLRELVKRW+NHKVMVRWLSRFFHYLDR
Sbjct: 61  YSQQLYDKYRESFEEYITSTVLPSLREKHDEFMLRELVKRWANHKVMVRWLSRFFHYLDR 120

Query: 121 YFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIF 180
           YFIARRSLPPLNEVGLTCFRDLVY ELN KVRDAVI+LIDQEREGEQIDRALLKNVLDIF
Sbjct: 121 YFIARRSLPPLNEVGLTCFRDLVYQELNAKVRDAVISLIDQEREGEQIDRALLKNVLDIF 180

Query: 181 VEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSH 240
           VEIGMGQMDYYENDFE AMLKDT +YYSRKASNWILEDSCPDYMLKAEECLKREKDRVSH
Sbjct: 181 VEIGMGQMDYYENDFEVAMLKDTGSYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSH 240

Query: 241 YLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGL 300
           YLHSSSEPKLLEKVQ+ELLSV+ANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGL
Sbjct: 241 YLHSSSEPKLLEKVQYELLSVFANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGL 300

Query: 301 DPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVN 360
           DPVS+IFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVN
Sbjct: 301 DPVSSIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVN 360

Query: 361 DCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLE 420
           DCFQNHTLFHK+LKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEE LE
Sbjct: 361 DCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLE 420

Query: 421 KVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGM 480
           KVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGM
Sbjct: 421 KVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGM 480

Query: 481 VSFGDYACEFKYLKVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSF 540
                         VTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSF
Sbjct: 481 --------------VTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSF 526

Query: 541 DLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASAL 600
           DLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNL+GKFE +T ELIVTTYQASAL
Sbjct: 527 DLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLIGKFEPKTMELIVTTYQASAL 586

Query: 601 LLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 660
           LLFNSSDRLSYSEIMTQLNL+DDDVVRLLHSLSCAKYKILNKEPNTK+ISPTD+FEFNSK
Sbjct: 587 LLFNSSDRLSYSEIMTQLNLTDDDVVRLLHSLSCAKYKILNKEPNTKSISPTDYFEFNSK 646

Query: 661 FTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQL 720
           FTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQL
Sbjct: 647 FTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQL 706

Query: 721 GRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 758
           GRMFKPDFKAIKKRIEDLITRDYLERDK NPN+FRYLA
Sbjct: 707 GRMFKPDFKAIKKRIEDLITRDYLERDKDNPNLFRYLA 744

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224123204|ref|XP_002330364.1| predicted protein [Populus trichocarpa] gi|222871568|gb|EEF08699.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449450670|ref|XP_004143085.1| PREDICTED: cullin-1-like [Cucumis sativus] gi|449517495|ref|XP_004165781.1| PREDICTED: cullin-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224107343|ref|XP_002314453.1| predicted protein [Populus trichocarpa] gi|222863493|gb|EEF00624.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225432272|ref|XP_002272195.1| PREDICTED: cullin-1 isoform 1 [Vitis vinifera] gi|297736859|emb|CBI26060.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|386688470|gb|AFJ21665.1| cullin 1-like protein B [Prunus avium] Back     alignment and taxonomy information
>gi|356563944|ref|XP_003550217.1| PREDICTED: cullin-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356556122|ref|XP_003546376.1| PREDICTED: cullin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356529771|ref|XP_003533461.1| PREDICTED: cullin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356521879|ref|XP_003529578.1| PREDICTED: cullin-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query758
TAIR|locus:2024755742 CUL2 "cullin 2" [Arabidopsis t 0.973 0.994 0.633 4.3e-260
TAIR|locus:2132377738 CUL1 "cullin 1" [Arabidopsis t 0.626 0.643 0.838 7.9e-220
TAIR|locus:2018645721 AT1G43140 [Arabidopsis thalian 0.580 0.610 0.658 7.5e-160
DICTYBASE|DDB_G0284903769 culC "cullin C" [Dictyostelium 0.505 0.498 0.320 9.3e-121
TAIR|locus:2205020732 CUL3B "AT1G69670" [Arabidopsis 0.519 0.538 0.372 2.4e-110
TAIR|locus:2025881374 AT1G59790 [Arabidopsis thalian 0.428 0.868 0.607 9.2e-107
UNIPROTKB|E1BFD5965 CUL4B "Uncharacterized protein 0.461 0.362 0.419 1.2e-102
ZFIN|ZDB-GENE-081007-1766 cul3b "cullin 3b" [Danio rerio 0.523 0.518 0.332 3.2e-102
UNIPROTKB|Q13619759 CUL4A "Cullin-4A" [Homo sapien 0.461 0.461 0.416 3.6e-101
MGI|MGI:1919834970 Cul4b "cullin 4B" [Mus musculu 0.461 0.360 0.419 5.8e-101
TAIR|locus:2024755 CUL2 "cullin 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2503 (886.2 bits), Expect = 4.3e-260, P = 4.3e-260
 Identities = 478/755 (63%), Positives = 593/755 (78%)

Query:     6 RKTIDLEQGWEFMQKGITKLKNILEGLP-EPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQ 64
             +K   LE GW  M+ G+ KL+ ILE +P EP F     M LYTT++N+CTQKPP+DYSQQ
Sbjct:     3 KKDSVLEAGWSVMEAGVAKLQKILEEVPDEPPFDPVQRMQLYTTVHNLCTQKPPNDYSQQ 62

Query:    65 LYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIA 124
             +YD+Y   + +Y   TVLP+IREKH E+MLRELVKRW+N K++VRWLS FF YLDR++  
Sbjct:    63 IYDRYGGVYVDYNKQTVLPAIREKHGEYMLRELVKRWANQKILVRWLSHFFEYLDRFYTR 122

Query:   125 RRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIG 184
             R S P L+ VG   FRDLVY EL  K +DAV+ LI +EREGEQIDRALLKNV+D++   G
Sbjct:   123 RGSHPTLSAVGFISFRDLVYQELQSKAKDAVLALIHKEREGEQIDRALLKNVIDVYCGNG 182

Query:   185 MGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHS 244
             MG++  YE DFE+ +L+D+A+YYSR AS W  E+SCPDYM+KAEE L+ EK+RV++YLHS
Sbjct:   183 MGELVKYEEDFESFLLEDSASYYSRNASRWNQENSCPDYMIKAEESLRLEKERVTNYLHS 242

Query:   245 SSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVS 304
             ++EPKL+ KVQ+ELL V A QL+E EHSGC ALLRDDK++DL+RM+RL+  IP+GLDPV+
Sbjct:   243 TTEPKLVAKVQNELLVVVAKQLIENEHSGCRALLRDDKMDDLARMYRLYHPIPQGLDPVA 302

Query:   305 NIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQ 364
             ++FKQH+T EG+AL+K A +AA++K A    +  +Q+QV +R++I+LHDK++ YV++CFQ
Sbjct:   303 DLFKQHITVEGSALIKQATEAATDKAASTSGLK-VQDQVLIRQLIDLHDKFMVYVDECFQ 361

Query:   365 NHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGS-EKLSDEAIEEMLEKVV 423
              H+LFHK+LKEAFEVFCNK VAG SSAE+LAT+CDNILK GG  EKL +E +E  LEKVV
Sbjct:   362 KHSLFHKALKEAFEVFCNKTVAGVSSAEILATYCDNILKTGGGIEKLENEDLELTLEKVV 421

Query:   424 KLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVSF 483
             KLL YISDKDLFAEF+RKK ARRLLFD++ ND HERS+LTK K+  G QFTSKMEGM+  
Sbjct:   422 KLLVYISDKDLFAEFFRKKQARRLLFDRNGNDYHERSLLTKFKELLGAQFTSKMEGML-- 479

Query:   484 GDYACEFKYLKVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLN 543
                         TD+TLA+E+QT+F E+LS N     G+D TVTVLTTGFWPSYK+ DLN
Sbjct:   480 ------------TDMTLAKEHQTNFVEFLSVNKTKKLGMDFTVTVLTTGFWPSYKTTDLN 527

Query:   544 LPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLF 603
             LP EMV CVE F+ +Y TKT  R+L+WIYSLGTC L GKF+ +T E++VTTYQA+ LLLF
Sbjct:   528 LPIEMVNCVEAFKAYYGTKTNSRRLSWIYSLGTCQLAGKFDKKTIEIVVTTYQAAVLLLF 587

Query:   604 NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTD 663
             N+++RLSY+EI+ QLNL  +D+ RLLHSLSC KYKIL KEP ++ IS TD FEFNSKFTD
Sbjct:   588 NNTERLSYTEILEQLNLGHEDLARLLHSLSCLKYKILIKEPMSRNISNTDTFEFNSKFTD 647

Query:   664 KMRRIKIPLPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRM 723
             KMRRI++PLPP              RRYAIDA++VRIMKSRKVLGHQQLV ECVE L +M
Sbjct:   648 KMRRIRVPLPPMDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEHLSKM 707

Query:   724 FKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 758
             FKPD K IKKRIEDLI+RDYLERD  NPN F+YLA
Sbjct:   708 FKPDIKMIKKRIEDLISRDYLERDTDNPNTFKYLA 742
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS
GO:0009941 "chloroplast envelope" evidence=IDA
TAIR|locus:2132377 CUL1 "cullin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018645 AT1G43140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284903 culC "cullin C" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2205020 CUL3B "AT1G69670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025881 AT1G59790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BFD5 CUL4B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081007-1 cul3b "cullin 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q13619 CUL4A "Cullin-4A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1919834 Cul4b "cullin 4B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q13619CUL4A_HUMANNo assigned EC number0.35040.87860.8774yesno
Q94AH6CUL1_ARATHNo assigned EC number0.81960.97220.9986yesno
Q54NZ5CUL3_DICDINo assigned EC number0.34580.91820.9050yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query758
pfam00888603 pfam00888, Cullin, Cullin family 0.0
COG5647773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 1e-116
smart00182143 smart00182, CULLIN, Cullin 1e-53
pfam1055768 pfam10557, Cullin_Nedd8, Cullin protein neddylatio 5e-28
smart0088468 smart00884, Cullin_Nedd8, Cullin protein neddylati 4e-25
pfam03450103 pfam03450, CO_deh_flav_C, CO dehydrogenase flavopr 0.004
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information 
 Score =  593 bits (1529), Expect = 0.0
 Identities = 264/649 (40%), Positives = 392/649 (60%), Gaps = 47/649 (7%)

Query: 15  WEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFE 74
           WE +   I ++           FSS DYM LYT +YN      PH   ++LY++ +E  E
Sbjct: 1   WEKLLDAIDQILL-------KSFSSLDYMELYTAVYNYV----PHKLGEKLYNRLKEYLE 49

Query: 75  EYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEV 134
           EY+++ +L SI E  DE +L+   K W+     ++ L+  F YL+RY++ R++L  + E+
Sbjct: 50  EYVAA-LLKSILENDDEVLLKTYYKEWNKFSTSMKILNNIFMYLNRYYVKRKNLDGVYEL 108

Query: 135 GLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYEND 194
           GL  +R+ ++  +  K+ DA++ LI++ER GE IDR+L+KNVLD+FVE+G+ +++ Y+ D
Sbjct: 109 GLDIWRESLFDPIKDKLIDALLRLIEKERLGEIIDRSLIKNVLDMFVELGLDKLEVYKED 168

Query: 195 FETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKV 254
           FE   L+ T+ +Y +++S ++ E+S  +YM K EE L+ E++RV  YLHSS+E KL+E  
Sbjct: 169 FEKPFLEATSEFYKKESSKFLQENSVSEYMKKVEERLEEEEERVRLYLHSSTEKKLIEVC 228

Query: 255 QHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAE 314
           +  L+  +   L    HS    LL ++K+EDL RM+RL S++P GL+P+   F++H+  E
Sbjct: 229 EKVLIEKHLEFL----HSEFQRLLDNEKIEDLRRMYRLLSRVPNGLEPLRKYFEKHIKKE 284

Query: 315 GTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLK 374
           G A V                 V    + +V+ ++ELHDKY + VN+ F N  LF  +L 
Sbjct: 285 GLAAVSDLA-------------VETDPKDYVQTLLELHDKYDSLVNEAFNNDALFLNALD 331

Query: 375 EAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDL 434
           +AFE F N     S SAELLA +CD++LKK   + L++E +EE L+K++ L  YI DKD+
Sbjct: 332 KAFEEFINSNS--SKSAELLAKYCDSLLKK-SLKGLNEEELEEKLDKIIVLFKYIEDKDV 388

Query: 435 FAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVSFGDYACEFKYLK 494
           F +FYRK LA+RLL   SA+DD E+ ++ KLKQ+CG QFTSK+E M              
Sbjct: 389 FEKFYRKMLAKRLLNGTSASDDAEKKMIEKLKQECGYQFTSKLERM-------------- 434

Query: 495 VTDLTLARENQTSFEEYLSNNPNANP-GIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVE 553
             D++L++E   SF+ +L NN +    GIDL+V VL+TGFWP+  +   +LP E+ K +E
Sbjct: 435 FKDISLSKELNNSFKNHLENNLDLLSEGIDLSVLVLSTGFWPTLPTEPFSLPEELEKALE 494

Query: 554 VFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSE 613
            F EFY  K   RKLTW++SLG   L  +F  +T EL V+TYQ + LLLFN  + L+  E
Sbjct: 495 KFEEFYSKKHSGRKLTWLHSLGRGELKAEFNDKTYELTVSTYQMAVLLLFNDQEELTVEE 554

Query: 614 IMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFT 662
           +     LSDD + R L SL  AK  +L K P  +  SP   F  NS FT
Sbjct: 555 LSEATGLSDDLLRRTLQSLLKAKVLLLTKIPKGEEFSPNTVFSLNSDFT 603

Length = 603
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information
>gnl|CDD|204512 pfam10557, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|214883 smart00884, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|217566 pfam03450, CO_deh_flav_C, CO dehydrogenase flavoprotein C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 758
KOG2166725 consensus Cullins [Cell cycle control, cell divisi 100.0
COG5647773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 100.0
KOG2284728 consensus E3 ubiquitin ligase, Cullin 2 component 100.0
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 100.0
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 100.0
KOG2285777 consensus E3 ubiquitin ligase, Cullin 1 component 100.0
smart00182142 CULLIN Cullin. 99.97
KOG2165765 consensus Anaphase-promoting complex (APC), subuni 99.95
PF1055768 Cullin_Nedd8: Cullin protein neddylation domain; I 99.75
PF08539158 HbrB: HbrB-like; InterPro: IPR013745 HbrB is invol 96.98
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 94.47
TIGR0161095 phage_O_Nterm phage replication protein O, N-termi 92.89
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 91.12
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 90.95
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 90.73
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 90.41
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 88.39
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 87.28
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 86.14
TIGR02337118 HpaR homoprotocatechuate degradation operon regula 84.84
PF0102247 HTH_5: Bacterial regulatory protein, arsR family; 84.57
PRK11512144 DNA-binding transcriptional repressor MarR; Provis 83.09
PF1284061 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ 82.8
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 82.03
smart0055068 Zalpha Z-DNA-binding domain in adenosine deaminase 80.62
>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=2e-118  Score=1016.81  Aligned_cols=718  Identities=66%  Similarity=1.092  Sum_probs=671.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHhcccchh
Q 004376            6 RKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSI   85 (758)
Q Consensus         6 ~~~~~f~~~W~~l~~ai~~i~~il~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~i~~~l~~~v~~~l   85 (758)
                      +.+.+|+..|+.++++++++.+..++-..+.++.-+++.+|+++|++|+++++.+.+++||+++++++.+|+.+.+.+..
T Consensus         5 ~~~~~~~~~w~~~~~~~~~l~~~~~~~s~~~~~~~~~~~ly~t~~~~~~~k~~~~~~~~lY~~l~~~~~~yl~~~~~~~~   84 (725)
T KOG2166|consen    5 PKEIDLEVGWSYIETGITKLKRIIEGLSEPAFEQYQFMYLYTTIYNMCLQKPPHDYSQQLYDKYREVIEEYLIQTVLPAL   84 (725)
T ss_pred             ccccchhccHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999888765444457888999999999999999966656699999999999999998877777


Q ss_pred             hccCcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcC-CCCcHHHHH-HHHHHHHHhh-hhhHHHHHHHHHHHHHH
Q 004376           86 REKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARR-SLPPLNEVG-LTCFRDLVYT-ELNGKVRDAVITLIDQE  162 (758)
Q Consensus        86 ~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~-~~~~i~~l~-l~~f~~~v~~-~l~~~l~~~ll~~I~~~  162 (758)
                      ....++.++..+...|.+|+.++.+++++|.||||+||.+. +..++.+++ +.+|+..++. +++++++++++.+|..+
T Consensus        85 ~~~~~~~~l~~~~~~W~~~~~~~~~~~~i~~YldR~~v~~~~~~~~v~~~~~l~l~r~~v~~~~~~~~~~~all~lI~~e  164 (725)
T KOG2166|consen   85 REKHDEYMLRELAKRWNNHKVLVRWLSDFFMYLDRYYVAQSRRKLPTLNEVGLTCFRDLVYKFEMQSEAIDALLALIHKE  164 (725)
T ss_pred             HhcCcHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCcccceeeEEeehHHHHHHHHHHHHHHHHHHHHhh
Confidence            77788899999999999999999999999999999999876 667777766 8888888877 59999999999999999


Q ss_pred             hcCCccCHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcccc
Q 004376          163 REGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYL  242 (758)
Q Consensus       163 R~g~~i~~~~l~~~i~~l~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~~~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l  242 (758)
                      |.|+.+|+..|+++++++..+|.+...+|...||++|++.|..||..++++|+...++++|+.+|+.++.+|..|+..|+
T Consensus       165 R~ge~in~~~i~~~~~~~~~lg~~~~s~Y~~~Fe~~fl~~t~~~y~~~~~~~l~~~~~~~yl~k~e~~l~~e~~r~~~yl  244 (725)
T KOG2166|consen  165 REGEQIDRELIRNVIDVYVELGMGELSFYEEDFERKFLQDTASYYSEEASEWLEENSCLDYLKKIEECLKEERERVTHYL  244 (725)
T ss_pred             cccccccHHHHhhHHHHHHhccccchhHHHHHhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999889999999999999999999999999999988999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhH
Q 004376          243 HSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLA  322 (758)
Q Consensus       243 ~~~t~~kl~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~dL~~ly~L~~~~~~~l~~l~~~~~~~I~~~g~~i~~~~  322 (758)
                      +..+.+++.+.+...++..+++.+++..++|+..|+.+++.++|.+||+|+++++.|++.+++.|+.|++.+|..++.+.
T Consensus       245 ~~~~e~~~~~~le~~~~~~~~~~~~e~~~sgf~~~l~~~~~edl~~my~l~~r~~~gl~~l~~~~~~~~~~eg~~l~~r~  324 (725)
T KOG2166|consen  245 HSSTEPKLVEVVEDELIVVFADDLEEMEHSGFRALLNDDKLEDLSRMYRLFRRILPGLEPLASVFKQHVREEGNALVARP  324 (725)
T ss_pred             hhcccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHhccchhHHHHHHHHhhcccccchhHHHHHHHHHHhhHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888775


Q ss_pred             HHHhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHh
Q 004376          323 EDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNIL  402 (758)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~n~~~~~~~~~e~La~y~d~~l  402 (758)
                      ....           ..+|..++..+++++++|..++..||+++..|..+++.||..|+|.+..  ..+|+||+|||.++
T Consensus       325 ~~~~-----------~~~~~~~v~~~l~~~~~~~~~~~~~f~~d~~f~~~ld~a~~~fin~n~~--~~~E~la~y~D~~l  391 (725)
T KOG2166|consen  325 AETA-----------ATNPVEYVQGLLELHDKYKVLVKECFANDTLFKKALDAAFEEFINKNVA--TSAELLATYCDDIL  391 (725)
T ss_pred             hhhc-----------ccchHHHHhccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHcccCC--CcHHHHHHHhHHHh
Confidence            5331           1468899999999999999999999999999999999999999999862  23799999999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHhhhccccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCchhhHhhhhhcc
Q 004376          403 KKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVS  482 (758)
Q Consensus       403 ~~~~~~~~~~~~~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~  482 (758)
                      |++ ..+.++++++..+++++.+|+|+.+||+|+.+|+++||||||+++|.|++.|+.||.+|+++||.+||++|++|+ 
T Consensus       392 kk~-~k~~~e~~ie~~l~~v~~l~~yisdKdvF~~~Ykk~lakRLl~~~S~sdd~E~~mIsklk~~~g~~~T~kL~~Mf-  469 (725)
T KOG2166|consen  392 KKG-SKKLSDEAIEDTLEKVVKLLKYISDKDVFAEFYKKVLARRLLFDRSASDDHEKSLITKLKNLCGEQFTSKLEGMF-  469 (725)
T ss_pred             ccc-ccCCchhHHHhHhhcceeeeeeccHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHhHHHHHHHhhc-
Confidence            994 467789999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cccccccccccccchhHhhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCCccCCHhHHHHHHHHHHHHhhc
Q 004376          483 FGDYACEFKYLKVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTK  562 (758)
Q Consensus       483 ~~~~~~~~~~~~~~D~~~S~~~~~~f~~~~~~~~~~~~~~~~~~~vLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~  562 (758)
                                   +|+..|++++..|.++ . +.....+++|.|.|||+|+||.+++.++.||++|.++++.|..||..+
T Consensus       470 -------------~D~~~s~~l~~~F~~~-~-~~~~~~~~df~v~VLt~g~WP~~~~~~~~LP~el~~~~e~F~~~Y~~k  534 (725)
T KOG2166|consen  470 -------------TDLTLSRELQTAFADY-A-NYSANLGIDFTVTVLTTGFWPSYKSTDINLPSEMSDCVEMFKGFYATK  534 (725)
T ss_pred             -------------ccHHHHHHHHHHHHhh-h-chhccCCCceeEEEeecCCcCCccCCCCCCChhHHHHHHHHHHHHhhc
Confidence                         9999999999999987 1 222345799999999999999988888999999999999999999999


Q ss_pred             CCCceEEeccCcceEEEEeEecCeeEEEEEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376          563 TKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK  642 (758)
Q Consensus       563 ~~~R~L~w~~~l~~~~l~~~~~~~~~~l~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~  642 (758)
                      |+||+|.|+|++|.|+|.++|++++++|+||++||+||++||+.+.+|+++|.+.|+++.+++.++|+||++.|.+++.+
T Consensus       535 h~gR~L~w~~~l~~~ei~~~~~~~~~~l~vst~Qm~VLlLFN~~d~lt~~eI~~~t~i~~~~l~~~L~Sl~~~K~~v~~~  614 (725)
T KOG2166|consen  535 HNGRRLTWIYSLGTGEINGKFDKKTVELQVSTYQMAVLLLFNNTEKLTYEEILEQTNLGHEDLARLLQSLSCLKYKILLK  614 (725)
T ss_pred             cCCCeeeeeeccCceEEEEEecCceEEEEEEhHHHHHHHHccchhhccHHHHHHHhCCCHHHHHHHHHHHHHHhHhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888777766


Q ss_pred             CCCCCCCCCCCcEEeccCCCCCCceeeccCCCchhhhhHHHhHHHhhhhhhceeeeeccccCCCCChHHHHHHHHHHhcC
Q 004376          643 EPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGR  722 (758)
Q Consensus       643 ~~~~~~i~~~~~~~~N~~f~~~~~~i~i~~~~~~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~  722 (758)
                       |.++. ++++.|.+|.+|+++.+|+++++++..+.+++.+.+++||++.|+||||||||+||.|.|++|+.+|.+|+++
T Consensus       615 -~~s~~-~~~~~~~~N~~f~sk~~Rv~i~~~~~~e~~~~~~~ve~dRk~~i~AaIVRIMK~rK~l~h~~Lv~Ev~~ql~~  692 (725)
T KOG2166|consen  615 -PMSRT-SPNDEFAFNSKFTSKMRRVKIPLPPMDERKKVVEDVDKDRKYAIDAAIVRIMKSRKVLGHQQLVSEVVEQLSE  692 (725)
T ss_pred             -ccccC-CCCcEEEeeccccCcceeeccCCCCchhHHHHHhhhhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence             66666 8899999999999999999999888888888899999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHhhhhhccccccCCCCCceee
Q 004376          723 MFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRY  756 (758)
Q Consensus       723 ~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y  756 (758)
                      +|.|++.+||+|||.|||||||+|| +|+++|.|
T Consensus       693 RF~p~v~~IKk~Ie~LIEkeYleR~-~~~~~Y~Y  725 (725)
T KOG2166|consen  693 RFKPDIKMIKKRIEDLIEREYLERD-ENPNIYRY  725 (725)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhcc-CCCCcccC
Confidence            9999999999999999999999999 89999998

>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00182 CULLIN Cullin Back     alignment and domain information
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain Back     alignment and domain information
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR Back     alignment and domain information
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities Back     alignment and domain information
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional Back     alignment and domain information
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query758
2hye_C759 Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl 1e-112
4a0k_A742 Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp 1e-112
4a0c_C741 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 1e-106
4a0l_E726 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 1e-106
1u6g_A776 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 2e-95
1ldj_A760 Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu 1e-94
1ldk_B366 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 2e-50
3rtr_A368 A Ring E3-Substrate Complex Poised For Ubiquitin-Li 2e-48
1ldk_A396 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 6e-39
4ap2_B410 Crystal Structure Of The Human Klhl11-cul3 Complex 2e-37
4apf_B388 Crystal Structure Of The Human Klhl11-cul3 Complex 4e-37
4eoz_B364 Crystal Structure Of The Spop Btb Domain Complexed 2e-33
4f52_A282 Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 3e-32
3dpl_C382 Structural Insights Into Nedd8 Activation Of Cullin 9e-30
3dqv_C382 Structural Insights Into Nedd8 Activation Of Cullin 1e-26
4a64_A354 Crystal Structure Of The N-Terminal Domain Of Human 2e-25
2wzk_A391 Structure Of The Cul5 N-Terminal Domain At 2.05a Re 7e-20
2do7_A101 Solution Structure Of The Winged Helix-Turn-Helix M 1e-14
3tdu_C77 N-Terminal Acetylation Acts As An Avidity Enhancer 7e-11
1iuy_A92 Solution Structure Of The Cullin-3 Homologue Length 2e-10
3o6b_B76 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 9e-06
3o2p_E88 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 1e-05
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 Back     alignment and structure 
Iteration: 1

 Score =  404 bits (1038), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/722 (34%), Positives = 394/722 (54%), Gaps = 56/722 (7%)
Query: 45  LYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFM-LRELVKRWSN 103
           LY  + N+C+    H  S  LY + R++ E+++ + +LP   +  D  + L+++   W +
Sbjct: 86  LYQAVENLCS----HKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQD 141
Query: 104 HKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LNGKVRDAVITLID 160
           H   +  +   F +LDR ++ + S LP + ++GL  FR  + ++  +  K  D ++ LI+
Sbjct: 142 HCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIE 201
Query: 161 QEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSC 220
           +ER GE +DR+LL+++L +     +  +  Y++ FE   L++T   Y+ +    + E   
Sbjct: 202 RERSGEAVDRSLLRSLLGM-----LSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREV 256
Query: 221 PDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRD 280
           P+Y+    + L+ E DRV  YL  S++  L+  V+ +LL  +   +L+K   G   LL +
Sbjct: 257 PEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQK---GLDHLLDE 313
Query: 281 DKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQ 340
           ++V DL++M++LFS++  G   +   + +++   GTA+V   E                +
Sbjct: 314 NRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPE----------------K 357
Query: 341 EQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDN 400
           ++  V+ +++  DK    +  CFQ +  F   +KE+FE F NK    +  AEL+A   D+
Sbjct: 358 DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINK--RPNKPAELIAKHVDS 415
Query: 401 ILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERS 460
            L+ G  E  +DE +E  L+K++ L  +I  KD+F  FY+K LA+RLL  KSA+ D E+S
Sbjct: 416 KLRAGNKEA-TDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKS 474
Query: 461 ILTKLKQQCGGQFTSKMEGMVSFGDYACEFKYLKVTDLTLARENQTSFEEYLSNNPNANP 520
           +L+KLK +CG  FTSK+EGM         FK     D+ L+++    F++++ N  ++ P
Sbjct: 475 MLSKLKHECGAAFTSKLEGM---------FK-----DMELSKDIMVHFKQHMQNQSDSGP 520
Query: 521 GIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLL 580
            IDLTV +LT G+WP+Y   +++L  EM+K  EVF+ FY  K   RKL W  +LG   L 
Sbjct: 521 -IDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLK 579
Query: 581 GKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKIL 640
            +F+    E  V+ +Q   LL+FN  D  S+ EI     + D ++ R L SL+C K ++L
Sbjct: 580 AEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVL 639
Query: 641 NKEPNTKTISPTDHFEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXXRRYAIDAS 696
            K P  K +   D F FN +F  K+ RIKI                      R+Y IDA+
Sbjct: 640 IKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAA 699
Query: 697 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRY 756
           IVRIMK RK LGH  LV E   QL    KP    +KKRIE LI RDY+ERDK NPN + Y
Sbjct: 700 IVRIMKMRKTLGHNLLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMERDKDNPNQYHY 757
Query: 757 LA 758
           +A
Sbjct: 758 VA 759
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 Back     alignment and structure
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 Back     alignment and structure
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 Back     alignment and structure
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 Back     alignment and structure
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 Back     alignment and structure
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 Back     alignment and structure
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like Protein Transfer: Structural Insights Into Cullin-Ring Ligases Length = 368 Back     alignment and structure
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 396 Back     alignment and structure
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 410 Back     alignment and structure
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a Resolution Length = 388 Back     alignment and structure
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 364 Back     alignment and structure
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 Back     alignment and structure
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b At 2.57a Resolution Length = 354 Back     alignment and structure
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a Resolution Length = 391 Back     alignment and structure
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of Human Cul-4b Length = 101 Back     alignment and structure
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within An Interconnected Multiprotein Complex: Structure Of A Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex Length = 77 Back     alignment and structure
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue Length = 92 Back     alignment and structure
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Low Resolution Length = 76 Back     alignment and structure
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Length = 88 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query758
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 0.0
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 0.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 1e-108
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 1e-97
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 5e-97
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 2e-93
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 4e-83
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 7e-30
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 2e-29
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 4e-28
3o2p_E88 Cell division control protein 53; ligase, cell cyc 5e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
 Score =  649 bits (1674), Expect = 0.0
 Identities = 234/799 (29%), Positives = 408/799 (51%), Gaps = 90/799 (11%)

Query: 11  LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQ------- 63
           L+Q W+ ++ GI ++            +   YM LYT +YN CT     + ++       
Sbjct: 1   LDQIWDDLRAGIQQVYT------RQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPS 54

Query: 64  ----------------QLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVM 107
                           +LY + +E  + Y+++ +L    +  DE +L+   ++W +++  
Sbjct: 55  KSKKGQTPGGAQFVGLELYKRLKEFLKNYLTN-LLKDGEDLMDESVLKFYTQQWEDYRFS 113

Query: 108 VRWLSRFFHYLDRYFIAR------RSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQ 161
            + L+    YL+R+++ R      + +  +  + L  +RD ++  LN +V +AV+ LI++
Sbjct: 114 SKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEK 173

Query: 162 EREGEQIDRALLKNVLDIFVEIGMGQMD---------YYENDFETAMLKDTAAYYSRKAS 212
           ER GE I+  L+  V+  +VE+G+ + D          Y+  FE+  L DT  +Y+R+++
Sbjct: 174 ERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST 233

Query: 213 NWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHS 272
            ++ ++   +YM KAE  L  E+ RV  YLH S++ +L  K +  L+  +    LE  H+
Sbjct: 234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKH----LEIFHT 289

Query: 273 GCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAE 332
               LL  DK EDL RM+ L S+I  GL  +  + + H+  +G A ++   +AA N    
Sbjct: 290 EFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALN---- 345

Query: 333 KRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVF------CNKGVA 386
                    +++V+ V+++H KY A V   F N   F  +L +A   F           +
Sbjct: 346 -------DPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQS 398

Query: 387 GSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARR 446
            S S ELLA +CD++LKK  S+   +  +E+ L +V+ +  YI DKD+F +FY K LA+R
Sbjct: 399 SSKSPELLARYCDSLLKKS-SKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKR 457

Query: 447 LLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVSFGDYACEFKYLKVTDLTLARENQT 506
           L+   SA+DD E S+++KLKQ CG ++TSK++ M                D+ ++++   
Sbjct: 458 LVHQNSASDDAEASMISKLKQACGFEYTSKLQRMF--------------QDIGVSKDLNE 503

Query: 507 SFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHR 566
            F+++L+N+      +D ++ VL++G WP  +S    LP+E+ +  + F  FY ++   R
Sbjct: 504 QFKKHLTNSEP--LDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGR 561

Query: 567 KLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVV 626
           KLTW+Y L    L+         L  +T+Q + LL +N+ D  +  ++     +  D + 
Sbjct: 562 KLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILA 621

Query: 627 RLLHSLSCAKYKILNKEPNTKT---ISPTDHFEFNSKFTDKMRRIKIPLP----PVDEKK 679
           ++L  L  +K  +L  E        + P    +    + +K  R+ I +P       E++
Sbjct: 622 QVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQE 681

Query: 680 KVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLI 739
              +++++DR+  I A+IVRIMK RKVL HQQL+ E + QL   FKP    IKK I+ LI
Sbjct: 682 TTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILI 741

Query: 740 TRDYLERDKSNPNMFRYLA 758
            ++YLER     + + YLA
Sbjct: 742 EKEYLERVDGEKDTYSYLA 760
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391 Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410 Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364 Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354 Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Length = 92 Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Length = 77 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Length = 88 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query758
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 100.0
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 100.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 100.0
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 100.0
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 100.0
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 100.0
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 100.0
3o2p_E88 Cell division control protein 53; ligase, cell cyc 99.91
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 99.91
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 99.89
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 99.89
1wi9_A72 Protein C20ORF116 homolog; helix-turn-helix motif, 85.27
3lmm_A583 Uncharacterized protein; multi-domained alpha-beta 84.47
3cuo_A99 Uncharacterized HTH-type transcriptional regulato; 83.51
2jt1_A77 PEFI protein; solution structure, winged helix-tur 82.26
2dk5_A91 DNA-directed RNA polymerase III 39 kDa polypeptide 82.08
1p4x_A250 Staphylococcal accessory regulator A homologue; wi 82.04
3jth_A98 Transcription activator HLYU; transcription factor 81.37
3tgn_A146 ADC operon repressor ADCR; helix-turn-helix, trans 80.59
3hsr_A140 HTH-type transcriptional regulator SARZ; helix-tur 80.56
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 80.47
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Back     alignment and structure
Probab=100.00  E-value=3.5e-131  Score=1165.88  Aligned_cols=707  Identities=32%  Similarity=0.586  Sum_probs=652.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhcCC-----------------------CCCCcHHHHHH
Q 004376           11 LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQK-----------------------PPHDYSQQLYD   67 (758)
Q Consensus        11 f~~~W~~l~~ai~~i~~il~~~~~~~~s~~~y~~lY~~vy~lc~~~-----------------------~~~~~~e~LY~   67 (758)
                      |+++|..|++||++|   +.+   .+++..+||++|++||++|+++                       +|..+|+.||+
T Consensus         1 f~~~W~~L~~ai~~I---~~~---~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~   74 (760)
T 1ldj_A            1 LDQIWDDLRAGIQQV---YTR---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK   74 (760)
T ss_dssp             CHHHHHHHHHHHHHH---TTC---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred             ChhhHHHHHHHHHHH---Hhc---CCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHH
Confidence            689999999999996   433   2588999999999999999986                       13447899999


Q ss_pred             HHHHHHHHHHHhcccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcCC------CCcHHHHHHHHHHH
Q 004376           68 KYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS------LPPLNEVGLTCFRD  141 (758)
Q Consensus        68 ~l~~~i~~~l~~~v~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~~------~~~i~~l~l~~f~~  141 (758)
                      ++++.+.+|+...+. .+....++.||..|..+|.+|+.++.+|+++|+||||+||++.+      .++|+++|+.+||+
T Consensus        75 ~l~~~l~~~l~~~~~-~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~  153 (760)
T 1ldj_A           75 RLKEFLKNYLTNLLK-DGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRD  153 (760)
T ss_dssp             HHHHHHHHHHHHHHH-TTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHH-HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHH
Confidence            999999999987543 34455678899999999999999999999999999999999875      78999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHhccC---------cccccHHHHHHHHHHHHHHHHHHHHH
Q 004376          142 LVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMG---------QMDYYENDFETAMLKDTAAYYSRKAS  212 (758)
Q Consensus       142 ~v~~~l~~~l~~~ll~~I~~~R~g~~i~~~~l~~~i~~l~~l~~~---------~~~~Y~~~FE~~~L~~t~~yY~~~~~  212 (758)
                      +||.++++++.++++++|+++|.|+.+|+.+|+++++||+.||.+         .+.+|.+.||++||++|.+||+.+++
T Consensus       154 ~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~  233 (760)
T 1ldj_A          154 CLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST  233 (760)
T ss_dssp             HHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999743         36899999999999999999999999


Q ss_pred             HHHhcCChhhHHHHHHHHHHHHHHHHccccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcHHHHHHHHHh
Q 004376          213 NWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRL  292 (758)
Q Consensus       213 ~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l~~~t~~kl~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~dL~~ly~L  292 (758)
                      .|+.+.++++||++|+.++++|.+||..||+++|.++|.++|+++||.+|.+.|+    +|+..||++++.+||++||+|
T Consensus       234 ~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~dL~~my~L  309 (760)
T 1ldj_A          234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNL  309 (760)
T ss_dssp             HHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999885    589999999999999999999


Q ss_pred             hccCCCChhhHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 004376          293 FSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKS  372 (758)
Q Consensus       293 ~~~~~~~l~~l~~~~~~~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~~  372 (758)
                      |+++++|++.++..|++||.+.|.+++....+..           ..++..||+.|+++|++|+.++..||++|+.|..+
T Consensus       310 ~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~~-----------~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~a  378 (760)
T 1ldj_A          310 VSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAA-----------LNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAA  378 (760)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSG-----------GGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHH
T ss_pred             hCcCcchHHHHHHHHHHHHHHHHHHHHHHhhccc-----------ccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            9999999999999999999999999997643110           24688999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcC------CCCCChHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhccccChhHHHHHHHHHHHHH
Q 004376          373 LKEAFEVFCNKG------VAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARR  446 (758)
Q Consensus       373 l~~af~~~~n~~------~~~~~~~e~La~y~d~~l~~~~~~~~~~~~~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~R  446 (758)
                      +++||+.|+|.+      ....++||+||+|||.+||+|. ++.++++++..|++++.||+|+++||+|+.+|+++||+|
T Consensus       379 l~~af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakR  457 (760)
T 1ldj_A          379 LDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSS-KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKR  457 (760)
T ss_dssp             HHHHHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCS-SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCccccccccccccHHHHHHHhHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            999999999986      2236889999999999999865 456789999999999999999999999999999999999


Q ss_pred             hcCCCCCChHHHHHHHHHHHHhcCchhhHhhhhhcccccccccccccccchhHhhHHHHHHHHHHHhcCCCCCCCcceEE
Q 004376          447 LLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVSFGDYACEFKYLKVTDLTLARENQTSFEEYLSNNPNANPGIDLTV  526 (758)
Q Consensus       447 LL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~~~~~~~~~~~~~~~D~~~S~~~~~~f~~~~~~~~~~~~~~~~~~  526 (758)
                      ||.+++.+.+.|+.||++||.+||.+||++|++||              +|+..|++++..|++++.++  ...+++|+|
T Consensus       458 LL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~--------------~Di~~S~~l~~~f~~~~~~~--~~~~~~~~v  521 (760)
T 1ldj_A          458 LVHQNSASDDAEASMISKLKQACGFEYTSKLQRMF--------------QDIGVSKDLNEQFKKHLTNS--EPLDLDFSI  521 (760)
T ss_dssp             HHTTCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTTT--CCCSSEEEE
T ss_pred             hcCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhcc--cCCCCCeeE
Confidence            99999999999999999999999999999999999              99999999999999987651  234789999


Q ss_pred             EEeecCCCCCCCCCCccCCHhHHHHHHHHHHHHhhcCCCceEEeccCcceEEEEeEecCeeEEEEEcHHHHHHHHhhcCC
Q 004376          527 TVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSS  606 (758)
Q Consensus       527 ~vLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~l~~~~~~~~~~l~~s~~Q~~iLllFn~~  606 (758)
                      .|||+++||..+..++.||++|+.+++.|++||..+|+||+|.|.+++|+|+|+++|++++++|+||++||+||++||+.
T Consensus       522 ~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~  601 (760)
T 1ldj_A          522 QVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTE  601 (760)
T ss_dssp             EEEETTTSCCCCCSCCCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSS
T ss_pred             EecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCC
Confidence            99999999998878899999999999999999999999999999999999999999998999999999999999999999


Q ss_pred             CCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC-----CCCCCCCCCcEEeccCCCCCCceeeccCCCch----h
Q 004376          607 DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP-----NTKTISPTDHFEFNSKFTDKMRRIKIPLPPVD----E  677 (758)
Q Consensus       607 ~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~-----~~~~i~~~~~~~~N~~f~~~~~~i~i~~~~~~----e  677 (758)
                      +++|++||++.||++.++++++|.+|+  +.+||.+.|     +++.+.+++.|.+|.+|++++.||+|+.+...    |
T Consensus       602 ~~~t~~ei~~~t~i~~~~l~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e  679 (760)
T 1ldj_A          602 DAYTVQQLTDSTQIKMDILAQVLQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQE  679 (760)
T ss_dssp             SEEEHHHHHHHTCCCHHHHHHHHHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHH
T ss_pred             CCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcceeCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchh
Confidence            999999999999999999999999997  578998554     67889999999999999999999999865442    3


Q ss_pred             hhhHHHhHHHhhhhhhceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCceeec
Q 004376          678 KKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYL  757 (758)
Q Consensus       678 ~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi  757 (758)
                      ...+.+.+++||+..|+||||||||+||+|+|++|+.+|+++++++|.|++.+||+|||.||+||||+|+++|+++|+|+
T Consensus       680 ~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~Yl  759 (760)
T 1ldj_A          680 QETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYL  759 (760)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEEC
T ss_pred             hhhHHHHHHHHHHhHheeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeC
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 004376          758 A  758 (758)
Q Consensus       758 a  758 (758)
                      |
T Consensus       760 A  760 (760)
T 1ldj_A          760 A  760 (760)
T ss_dssp             C
T ss_pred             C
Confidence            8
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} Back     alignment and structure
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} Back     alignment and structure
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} Back     alignment and structure
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 Back     alignment and structure
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 Back     alignment and structure
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} Back     alignment and structure
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 758
d1ldja2394 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum 3e-92
d2hyec2347 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie 2e-89
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 1e-87
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 5e-83
d1iuya_92 a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus muscu 8e-30
d1ldja190 a.4.5.34 (A:687-776) Anaphase promoting complex (A 9e-30
d2hyec184 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapien 4e-28
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  292 bits (747), Expect = 3e-92
 Identities = 110/411 (26%), Positives = 201/411 (48%), Gaps = 60/411 (14%)

Query: 11  LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQ------- 63
           L+Q W+ ++ GI ++            +   YM LYT +YN CT     + ++       
Sbjct: 1   LDQIWDDLRAGIQQVYT------RQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPS 54

Query: 64  ----------------QLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVM 107
                           +LY + +E  + Y+++ +L    +  DE +L+   ++W +++  
Sbjct: 55  KSKKGQTPGGAQFVGLELYKRLKEFLKNYLTN-LLKDGEDLMDESVLKFYTQQWEDYRFS 113

Query: 108 VRWLSRFFHYLDRYFIAR------RSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQ 161
            + L+    YL+R+++ R      + +  +  + L  +RD ++  LN +V +AV+ LI++
Sbjct: 114 SKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEK 173

Query: 162 EREGEQIDRALLKNVLDIFVEIGMGQMD---------YYENDFETAMLKDTAAYYSRKAS 212
           ER GE I+  L+  V+  +VE+G+ + D          Y+  FE+  L DT  +Y+R+++
Sbjct: 174 ERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST 233

Query: 213 NWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHS 272
            ++ ++   +YM KAE  L  E+ RV  YLH S++ +L  K +  L+     + LE  H+
Sbjct: 234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIE----KHLEIFHT 289

Query: 273 GCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAE 332
               LL  DK EDL RM+ L S+I  GL  +  + + H+  +G A ++   +AA N    
Sbjct: 290 EFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALND--- 346

Query: 333 KRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNK 383
                    +++V+ V+++H KY A V   F N   F  +L +A   F N 
Sbjct: 347 --------PKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINN 389
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query758
d1ldja2394 Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec2347 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2hyec3273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja3276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 100.0
d1ldja190 Anaphase promoting complex (APC) {Human (Homo sapi 99.89
d2hyec184 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 99.89
d1iuya_92 Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 1 99.87
d1mkma175 Transcriptional regulator IclR, N-terminal domain 86.47
d1lnwa_141 MexR repressor {Pseudomonas aeruginosa [TaxId: 287 85.17
d1ylfa1138 Hypothetical protein BC1842 {Bacillus cereus [TaxI 85.06
d1lj9a_144 Transcriptional regulator SlyA {Enterococcus faeca 84.15
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 83.84
d2frha1115 Pleiotropic regulator of virulence genes, SarA {St 82.41
d1wi9a_72 Hypothetical protein C20orf116 homolog {Mouse (Mus 82.23
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 81.69
d2etha1140 Putative transcriptional regulator TM0816 {Thermot 81.09
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-56  Score=487.43  Aligned_cols=352  Identities=30%  Similarity=0.559  Sum_probs=319.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhcCCCCC-----------------------CcHHHHHH
Q 004376           11 LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPH-----------------------DYSQQLYD   67 (758)
Q Consensus        11 f~~~W~~l~~ai~~i~~il~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~-----------------------~~~e~LY~   67 (758)
                      .|++|..|++||++|   ++++   +++..+||++|++||++|+++++.                       ..|+.||+
T Consensus         1 ~d~~W~~L~~ai~~I---~~~~---~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~   74 (394)
T d1ldja2           1 LDQIWDDLRAGIQQV---YTRQ---SMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK   74 (394)
T ss_dssp             CHHHHHHHHHHHHHH---TTCC---CCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred             CcchHHHHHHHHHHH---HhcC---CCCHHHHHHHHHHHHHHHhcCCccccccccccchhhhhhccccchhhhHHHHHHH
Confidence            379999999999996   4442   578889999999999999987321                       13789999


Q ss_pred             HHHHHHHHHHHhcccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcCC------CCcHHHHHHHHHHH
Q 004376           68 KYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS------LPPLNEVGLTCFRD  141 (758)
Q Consensus        68 ~l~~~i~~~l~~~v~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~~------~~~i~~l~l~~f~~  141 (758)
                      ++++.+..|+... .+.+....++++|..+.+.|.+|+.++.+|+++|+||||+|+.+++      .++|+++|+.+|++
T Consensus        75 ~l~~~l~~~l~~i-~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~  153 (394)
T d1ldja2          75 RLKEFLKNYLTNL-LKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRD  153 (394)
T ss_dssp             HHHHHHHHHHHHH-HHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHH
Confidence            9999999999864 4556566678899999999999999999999999999999998753      47899999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHhccC---------cccccHHHHHHHHHHHHHHHHHHHHH
Q 004376          142 LVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMG---------QMDYYENDFETAMLKDTAAYYSRKAS  212 (758)
Q Consensus       142 ~v~~~l~~~l~~~ll~~I~~~R~g~~i~~~~l~~~i~~l~~l~~~---------~~~~Y~~~FE~~~L~~t~~yY~~~~~  212 (758)
                      .||.++++++.++++++|+++|+|+.+|+.+++++++|++.+|..         ..++|.+.||++||++|.+||+.++.
T Consensus       154 ~v~~~~~~~l~~~il~~I~~~R~g~~i~~~li~~~i~~l~~l~~~~~~~~~~~~~~~~Y~~~FE~~~L~~t~~~Y~~~~~  233 (394)
T d1ldja2         154 CLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST  233 (394)
T ss_dssp             HHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999852         35789999999999999999999999


Q ss_pred             HHHhcCChhhHHHHHHHHHHHHHHHHccccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcHHHHHHHHHh
Q 004376          213 NWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRL  292 (758)
Q Consensus       213 ~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l~~~t~~kl~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~dL~~ly~L  292 (758)
                      .|+++.++++|+++|+.++++|.+||+.||+++|.+++.+.|.++||.+|.+.|.    +|+..||++++.++|++||+|
T Consensus       234 ~~l~~~~~~eYl~~v~~~l~eE~~r~~~yl~~~t~~~l~~~l~~~LI~~~~~~l~----~~~~~ll~~~~~~~L~~lY~L  309 (394)
T d1ldja2         234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNL  309 (394)
T ss_dssp             HHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHH
T ss_pred             HHHHhCChhHHHHHHHHHHHHHHHHHHHccChhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998873    589999999999999999999


Q ss_pred             hccCCCChhhHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 004376          293 FSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKS  372 (758)
Q Consensus       293 ~~~~~~~l~~l~~~~~~~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~~  372 (758)
                      |++++++++.+++.|++||.+.|.++++.....+           ..++..||+.|+++|++|+.++.+||++|+.|.++
T Consensus       310 ~~rv~~~~~~l~~~~~~~I~~~G~~~i~~~~~~~-----------~~~~~~~V~~ll~l~~~~~~ii~~~F~~d~~f~~~  378 (394)
T d1ldja2         310 VSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAA-----------LNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAA  378 (394)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSG-----------GGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHH
T ss_pred             HhhccchHHHHHHHHHHHHHHHHHHHHHhhhhcc-----------cCChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            9999999999999999999999999997643221           34578999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcC
Q 004376          373 LKEAFEVFCNKG  384 (758)
Q Consensus       373 l~~af~~~~n~~  384 (758)
                      +++||+.|+|++
T Consensus       379 l~~af~~fiN~n  390 (394)
T d1ldja2         379 LDKACGRFINNN  390 (394)
T ss_dssp             HHHHHHHHHHSS
T ss_pred             HHHHHHHHhCcc
Confidence            999999999987
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure