Citrus Sinensis ID: 004379

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------76
MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGKVYFGAIILSVSWFF
cccEEEccEEEcccccccHHHHHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHccccccEEEEcccccccccHHHHHcccccHHHHHHHHHcccccccccccccHHHHHccccccccccccHHHHHHHcHHcccccHHHcccccccccEEEEcccccccHHHHHHcccccccEEEEEEccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEEccccccccccccccEEEEEEEcccHHHHHHHHHccccEEEEEccccccHHHHHHHHcccccEEEEcccccccccEEEEEEEccccccEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHcccccHHHHHHHHHcccccEEcccccccHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHcccccccHHccccccHHHHHHHHHHHHHHHHccccccccccEEEEEEEEcccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccEEccccccc
ccEEEEccEEEEccccccHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHcccHccHHHHHccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHccccccEEEEcccccccccHHHHHHccccHHHHHHHHHHHHHHHHccHcccHHHHcccccccccccccHHHHHHHcccccccHHHHHHHHHHcccEEEEEcHHcccHHHHHHHcccccccEEEEEccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHcccHHHHHHHHHHcccHHHHHHHcccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHcccEEEEEEEcccccccccccccccEEEEEEccHHHHHHHHHHccccEEEEEcccccccHHHHHHccccccEEEcccEEEccccEEEEEEEccccccEEcccccccccHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHccccccHHHHHHHHHcccEEEcccccHHHHHHHHHHHHHHHccccccEEEEEEEcccEccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEccHcccHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHcccccccccEEEccEEEEEEEEcc
mptykirgidvefpfeaydCQLVYMEKVIQSLQNKCNAllesptgtgkTLCLLCATLAWRKSlgsfstlgsqvnnqisgsqssvnssqsgdsklptilyTSRTHSQLRQVIQELktsnyrpkmviLGSREQLCIHREVSLLRGSAQNNACRFLckkgtnrrcnhhSRVAdymknnphlgdepidiedlvnigrtfgpcpyfmtrelqKTVDIVfapynylidpwfrkglgvewknsILIFDEAHNLEGICADAASFDLSSGLLTACISEakncidisstrrgqssdetlnpDNFAILRALLLKLEKRIAevpinskelgftkpgpYIYELLADLNITQETAYKLIDIVEVAAELLQEDklqnkksttACRIESISNILKIIFRdkgtahsaYYRVHVREADANAADVLKGKasrtlswwcfnpgiamqefsrLEVGSIIltsgtlspmdSFAQELKlnfplrvenphvitskqiwagivpvgpsgyllnssyrnrdsIEYKQELGNTIVNIArivpdglliffpsyylMDQCIAcwkntshgnltTIWERICkhkkpvveprqsslfpLAIEDYMAKLKDTSTSGAVFFAVCRGkvsegldfadhAGRAVVItgmpfatmtdpkvrLKREYLDLQaqsqggeyketklsflsgedwynqQASRAVNQAVGRVIrhrhdygaiifcderfahpsrksqislwiqpHIQCYSKFGDVVYTLTRFFreericgstnlkliktevsgkVYFGAIILSVSWFF
mptykirgidvefpFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGsqssvnssqsgdSKLPTILYTSRTHSQLRQVIQelktsnyrpkmVILGSREQLCIHREVsllrgsaqnNACRFLCKkgtnrrcnhhSRVADymknnphlGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDIsstrrgqssdetlnpDNFAILRALLLKLEKRIAevpinskelgftkpGPYIYELLADLNITQETAYKLIDIVEVAAELLQedklqnkksttacriESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVitskqiwagivPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKkpvveprqsslFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLqaqsqggeykeTKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFReericgstnlkliktevsgkvyFGAIILSVSWFF
MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLgsqvnnqisgsqssvnssqsgdsKLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGKVYFGAIILSVSWFF
***YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFST****************************ILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDI***************DNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQ*******YKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGKVYFGAIILSVSWF*
*PTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLE**TG***TLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSL**************************RVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDI************LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAEL****************IESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV***********AIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQS*********LSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRF*****************************LSVSWFF
MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNN*****************KLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDIS*********ETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGKVYFGAIILSVSWFF
MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGS**************************SKLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFREERICGST***LIKTEVSGKVYFGAIILSVSWFF
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MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGKVYFGAIILSVSWFF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query758 2.2.26 [Sep-21-2011]
A4K436 1216 Regulator of telomere elo yes no 0.928 0.578 0.411 1e-166
P0C928 1177 Regulator of telomere elo yes no 0.931 0.599 0.393 1e-160
Q9NZ71 1219 Regulator of telomere elo yes no 0.931 0.579 0.399 1e-159
Q5RE34 1302 Regulator of telomere elo yes no 0.931 0.542 0.401 1e-158
Q5RJZ1 1274 Regulator of telomere elo yes no 0.928 0.552 0.397 1e-158
Q0VGM9 1203 Regulator of telomere elo yes no 0.957 0.603 0.394 1e-157
Q6H1L8 1203 Regulator of telomere elo N/A no 0.957 0.603 0.390 1e-154
Q16X92 1010 Regulator of telomere elo N/A no 0.941 0.706 0.395 1e-153
Q7QEI1 991 Regulator of telomere elo yes no 0.920 0.704 0.395 1e-151
B4PZB4 985 Regulator of telomere elo N/A no 0.931 0.716 0.390 1e-150
>sp|A4K436|RTEL1_BOVIN Regulator of telomere elongation helicase 1 OS=Bos taurus GN=RTEL1 PE=2 SV=1 Back     alignment and function desciption
 Score =  584 bits (1506), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 316/768 (41%), Positives = 453/768 (58%), Gaps = 64/768 (8%)

Query: 1   MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
           MP   ++G+ V+FPF+ Y CQ  YM KV++ LQ K N +LESPTGTGKTLCLLC+TLAWR
Sbjct: 1   MPKITLKGVTVDFPFQPYKCQEEYMSKVLECLQEKVNGILESPTGTGKTLCLLCSTLAWR 60

Query: 61  KSLGSFSTLGSQVNNQISGS-------QSSVNSSQSGD-----SKLPTILYTSRTHSQLR 108
           + L   +    ++  + SG         S  N+   GD     + +P I+Y SRTHSQL 
Sbjct: 61  EHLRD-AVSARRIAERASGELFPDRTLASWGNAIPEGDVPACYTDIPKIIYASRTHSQLT 119

Query: 109 QVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRV 168
           QVI EL+ ++YRP++ +LGSREQLCIH EV   +    N+    LC++    R  H    
Sbjct: 120 QVISELRNTSYRPRVCVLGSREQLCIHPEV---KKQESNHMQVHLCRRKVASRSCHFYNN 176

Query: 169 ADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKG 228
            +       L    +DIEDLV  G     CPY+++R L++  DI+F PYNYL+D   R+ 
Sbjct: 177 VEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLDAKSRRA 236

Query: 229 LGVEWKNSILIFDEAHNLEGICADAASFDLSS-------GLLTACISEAKNCIDISSTRR 281
            G++ K +++IFDEAHN+E +C +AASFDL+         ++   + E       +    
Sbjct: 237 HGIDLKGTVVIFDEAHNVEKMCEEAASFDLTPHDVASELDVIDRVLEERTKVAQQAELHP 296

Query: 282 GQSSDET-----LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNI 336
             S+D       L P++ A L+ +LL+LE  I  V +     G TKPG YI+EL A+  I
Sbjct: 297 EFSADSARSGLNLEPEDLAKLKMILLRLEGAIDAVELPGDNSGVTKPGSYIFELFAEAQI 356

Query: 337 TQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFR------DKGTA-- 388
           T +T   ++D ++   +L+Q    +    T    ++ + +I++I+F       D G    
Sbjct: 357 TFQTKGCILDSLD---QLIQHLAGRAGLFTNTAGLQKLVDIIQIVFSVDSAEGDPGPMVG 413

Query: 389 -HSAYYRVHVR-----EADANAADVLKGKASR----TLSWWCFNPGIAMQEFSRLEVGSI 438
             S  Y+VH+         A  +DV    A+R     LS+WCF+PG +M+E  R  V ++
Sbjct: 414 LASQSYKVHIHLDAGHRRTAQRSDVWNTTAARKPGKVLSYWCFSPGHSMRELVRQGVRTL 473

Query: 439 ILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSI 498
           ILTSGTL+PM SF+ E+++ FP+ +ENPHVI   QIW G++P GP G  L+S++  R S 
Sbjct: 474 ILTSGTLAPMASFSLEMQIPFPVCLENPHVINQHQIWVGVIPKGPDGAQLSSAFDRRFSD 533

Query: 499 EYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV 558
           E    LG  + NI+R+VP GLL+FFPSY +M++ +  W+          + R  + +KP+
Sbjct: 534 ECLSSLGKVLSNISRVVPHGLLVFFPSYPVMEKSLEFWRARD-------FTRKLEVRKPL 586

Query: 559 -VEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPF 617
            VEPR    F   +E + A++    +SGA+F AVCRGK SEGLDFAD  GR V++TG+P+
Sbjct: 587 FVEPRSKGGFSEVMEAFYARVAAPESSGAIFLAVCRGKASEGLDFADVNGRGVIVTGLPY 646

Query: 618 ATMTDPKVRLKREYLD-LQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHR 676
               DP+V LK ++LD ++AQS  G        FLSG DWY QQASRAVNQA+GRVIRHR
Sbjct: 647 PPRMDPRVLLKMQFLDEMKAQSGAGG------QFLSGHDWYRQQASRAVNQAIGRVIRHR 700

Query: 677 HDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFR 724
           HDYGA+  CD RFAH   ++Q+  W++PH++ Y  FG V+  + +FFR
Sbjct: 701 HDYGAVFLCDHRFAHADTRAQLPSWVRPHVKVYDSFGHVIRDVAQFFR 748
ATP-dependent DNA helicase required to suppress inappropriate homologous recombination, thereby playing a central role DNA repair and in the maintenance of genomic stability. Antagonizes homologous recombination by promoting the disassembly of D loop recombination intermediates. Also required to regulate telomere length; probably due to its anti-recombinase function.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2
>sp|P0C928|RTEL1_DANRE Regulator of telomere elongation helicase 1 OS=Danio rerio GN=rtel1 PE=3 SV=1 Back     alignment and function description
>sp|Q9NZ71|RTEL1_HUMAN Regulator of telomere elongation helicase 1 OS=Homo sapiens GN=RTEL1 PE=1 SV=2 Back     alignment and function description
>sp|Q5RE34|RTEL1_PONAB Regulator of telomere elongation helicase 1 OS=Pongo abelii GN=RTEL1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RJZ1|RTEL1_RAT Regulator of telomere elongation helicase 1 OS=Rattus norvegicus GN=Rtel1 PE=2 SV=2 Back     alignment and function description
>sp|Q0VGM9|RTEL1_MOUSE Regulator of telomere elongation helicase 1 OS=Mus musculus GN=Rtel1 PE=2 SV=2 Back     alignment and function description
>sp|Q6H1L8|RTEL1_MUSSP Regulator of telomere elongation helicase 1 OS=Mus spretus GN=Rtel1 PE=2 SV=1 Back     alignment and function description
>sp|Q16X92|RTEL1_AEDAE Regulator of telomere elongation helicase 1 homolog OS=Aedes aegypti GN=AAEL008960 PE=3 SV=1 Back     alignment and function description
>sp|Q7QEI1|RTEL1_ANOGA Regulator of telomere elongation helicase 1 homolog OS=Anopheles gambiae GN=AGAP000634 PE=3 SV=5 Back     alignment and function description
>sp|B4PZB4|RTEL1_DROYA Regulator of telomere elongation helicase 1 homolog OS=Drosophila yakuba GN=GE16425 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query758
224054204749 predicted protein [Populus trichocarpa] 0.976 0.987 0.777 0.0
255574578 1049 regulator of telomere elongation helicas 0.965 0.697 0.753 0.0
359482607 1084 PREDICTED: regulator of telomere elongat 0.969 0.678 0.755 0.0
449448190 1054 PREDICTED: regulator of telomere elongat 0.953 0.685 0.746 0.0
356547406 1001 PREDICTED: regulator of telomere elongat 0.977 0.740 0.714 0.0
297743289777 unnamed protein product [Vitis vinifera] 0.935 0.912 0.687 0.0
357455003 1089 Regulator of telomere elongation helicas 0.970 0.675 0.671 0.0
357454989 1048 Regulator of telomere elongation helicas 0.970 0.702 0.671 0.0
42563365 1040 regulator of telomere elongation helicas 0.955 0.696 0.657 0.0
297842871 1016 hypothetical protein ARALYDRAFT_477264 [ 0.953 0.711 0.658 0.0
>gi|224054204|ref|XP_002298143.1| predicted protein [Populus trichocarpa] gi|222845401|gb|EEE82948.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1204 bits (3115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/746 (77%), Positives = 645/746 (86%), Gaps = 6/746 (0%)

Query: 1   MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
           MPTYKIRGIDV+FPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR
Sbjct: 2   MPTYKIRGIDVDFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 61

Query: 61  KSLGSFSTLGSQVNNQISGSQ-SSVNSSQSGDSKLPTILYTSRTHSQLRQVIQELKTSNY 119
           KSLG FST   + N +I+G +   V SSQS D  LPTI+Y SRTHSQLRQVIQELK S+Y
Sbjct: 62  KSLGGFSTGKIERNGRIAGGKLDIVPSSQSEDRNLPTIVYASRTHSQLRQVIQELKRSSY 121

Query: 120 RPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLG 179
           RPKMVILGSREQLCIH EVSLLRG  QNNAC  +CK    R+C H+SRVADY+K NPHLG
Sbjct: 122 RPKMVILGSREQLCIHEEVSLLRGKVQNNACHLICKTRGKRQCTHYSRVADYVKCNPHLG 181

Query: 180 DEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILI 239
           DEP+DIEDLVNIGRTFGPCPY+++REL K VDI+FAPYNYLID   RK L ++W NSILI
Sbjct: 182 DEPVDIEDLVNIGRTFGPCPYYISRELHKVVDILFAPYNYLIDRGNRKSLAIDWDNSILI 241

Query: 240 FDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRA 299
           FDEAHNLE +CADAASFDL S LLTACISEAK+CID+S TRR +S+D++ NPDNFAILRA
Sbjct: 242 FDEAHNLESLCADAASFDLPSWLLTACISEAKSCIDLSVTRREESNDKSWNPDNFAILRA 301

Query: 300 LLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDK 359
           LLLKLEKRIAEVPI SKELGFTKPGPYIYELLADLN+T +TA K+IDI++ AA LL+EDK
Sbjct: 302 LLLKLEKRIAEVPIESKELGFTKPGPYIYELLADLNVTHDTATKIIDIIKDAAVLLEEDK 361

Query: 360 LQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWW 419
            Q+K   T CR+ESIS+ L+IIFR+K  +H+ +YR    E +ANAADVLKGK SRTLSWW
Sbjct: 362 -QDKSKGTGCRLESISDFLQIIFREKNNSHANFYR----EGEANAADVLKGKPSRTLSWW 416

Query: 420 CFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIV 479
           CFNPGIAMQEFSR+ V SIILTSGTLSP+DSFAQELKL+FP+R+ENPHVI+S QIWAG+V
Sbjct: 417 CFNPGIAMQEFSRMGVRSIILTSGTLSPLDSFAQELKLDFPIRLENPHVISSNQIWAGVV 476

Query: 480 PVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNT 539
           P GPSG  LNSSYR RDS+EYKQELGN IVN ARIVPDGLL+FFPSYYL+DQCI+CWKN 
Sbjct: 477 PAGPSGRSLNSSYRTRDSLEYKQELGNAIVNFARIVPDGLLVFFPSYYLLDQCISCWKNM 536

Query: 540 SHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEG 599
           S  N TTIWERICKHKKPVVEPRQSSLFPLAIEDY+AKLKDTSTSGAVFFAVCRGKVSEG
Sbjct: 537 SQANSTTIWERICKHKKPVVEPRQSSLFPLAIEDYLAKLKDTSTSGAVFFAVCRGKVSEG 596

Query: 600 LDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQ 659
           LDFADHAGRAVVITGMPFA  TDPKVRLKREYLD Q  SQ    K  KL  LSGE+WY Q
Sbjct: 597 LDFADHAGRAVVITGMPFAMRTDPKVRLKREYLDGQTHSQRDGCKMLKLQVLSGEEWYGQ 656

Query: 660 QASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTL 719
           QASRAVNQAVGRVIRHR+DYGAIIFCDERF H +R++QISLWIQPHI+C+SKFGDVV+TL
Sbjct: 657 QASRAVNQAVGRVIRHRYDYGAIIFCDERFEHRNRQTQISLWIQPHIKCHSKFGDVVFTL 716

Query: 720 TRFFREERICGSTNLKLIKTEVSGKV 745
           +RFFR+     +  L+ I  E +GKV
Sbjct: 717 SRFFRDGGSRDAAKLRSIPREDTGKV 742

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255574578|ref|XP_002528200.1| regulator of telomere elongation helicase 1 rtel1, putative [Ricinus communis] gi|223532412|gb|EEF34207.1| regulator of telomere elongation helicase 1 rtel1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359482607|ref|XP_002279773.2| PREDICTED: regulator of telomere elongation helicase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449448190|ref|XP_004141849.1| PREDICTED: regulator of telomere elongation helicase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356547406|ref|XP_003542103.1| PREDICTED: regulator of telomere elongation helicase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297743289|emb|CBI36156.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357455003|ref|XP_003597782.1| Regulator of telomere elongation helicase [Medicago truncatula] gi|355486830|gb|AES68033.1| Regulator of telomere elongation helicase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357454989|ref|XP_003597775.1| Regulator of telomere elongation helicase [Medicago truncatula] gi|355486823|gb|AES68026.1| Regulator of telomere elongation helicase [Medicago truncatula] Back     alignment and taxonomy information
>gi|42563365|ref|NP_178113.3| regulator of telomere elongation helicase 1 [Arabidopsis thaliana] gi|332198212|gb|AEE36333.1| regulator of telomere elongation helicase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297842871|ref|XP_002889317.1| hypothetical protein ARALYDRAFT_477264 [Arabidopsis lyrata subsp. lyrata] gi|297335158|gb|EFH65576.1| hypothetical protein ARALYDRAFT_477264 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query758
TAIR|locus:2016209 1040 AT1G79950 [Arabidopsis thalian 0.955 0.696 0.646 1.2e-264
UNIPROTKB|Q16X92 1010 AAEL008960 "Regulator of telom 0.431 0.323 0.451 4.9e-144
UNIPROTKB|E1BTS7 1085 Gga.49055 "Uncharacterized pro 0.426 0.297 0.457 2.1e-141
ZFIN|ZDB-GENE-050306-11 1177 rtel1 "regulator of telomere e 0.583 0.375 0.388 5.1e-141
UNIPROTKB|E1BTS6 1124 Gga.49055 "Uncharacterized pro 0.426 0.287 0.457 6.1e-141
UNIPROTKB|F1NE49 1127 Gga.49055 "Uncharacterized pro 0.426 0.286 0.457 6.8e-141
UNIPROTKB|B0W9F4 978 CPIJ003765 "Regulator of telom 0.418 0.324 0.448 7.1e-141
UNIPROTKB|B3NSW1 985 GG18780 "Regulator of telomere 0.389 0.299 0.468 2.8e-137
UNIPROTKB|Q7QEI1 991 AGAP000634 "Regulator of telom 0.393 0.300 0.460 1.5e-136
UNIPROTKB|B4PZB4 985 GE16425 "Regulator of telomere 0.390 0.300 0.467 1.9e-136
TAIR|locus:2016209 AT1G79950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2546 (901.3 bits), Expect = 1.2e-264, P = 1.2e-264
 Identities = 472/730 (64%), Positives = 584/730 (80%)

Query:     1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
             MP Y IRGI+VEFPFEAY  Q++YM++VI+SLQNKC+ALLESPTGTGKTLCLLCATLAWR
Sbjct:    46 MPNYSIRGINVEFPFEAYQSQIIYMDRVIESLQNKCHALLESPTGTGKTLCLLCATLAWR 105

Query:    61 KSLGSFSTLXXXXXXX---XXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQELKTS 117
             KSLGSFST                             PTI+Y SRTHSQLRQVI+ELK S
Sbjct:   106 KSLGSFSTRKDRKNSAIPWSDSDEPLSQSGGGGGGAFPTIVYASRTHSQLRQVIKELKRS 165

Query:   118 NYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPH 177
             +YRPKMV+LGSREQLC++ EV+ LRG A  NAC++LCKK   R+CNH +R+ DY+K+NPH
Sbjct:   166 SYRPKMVVLGSREQLCVNEEVNSLRGKALTNACQYLCKKRGKRQCNHFNRLPDYLKHNPH 225

Query:   178 LGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSI 237
             +GDEP+DIEDLVNIG+  GPCPY++TREL K VDI+FAPYNYLI   +RK L V W NS+
Sbjct:   226 IGDEPVDIEDLVNIGKDSGPCPYYITRELHKDVDIIFAPYNYLISNGYRKFLKVNWTNSV 285

Query:   238 LIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAIL 297
             LIFDEAHNLE +CAD+ASFDL S LL+ACISEA+ C+ +++ RR   +D ++NP+NFAIL
Sbjct:   286 LIFDEAHNLESLCADSASFDLPSVLLSACISEAQECVQLAAARRDSLNDVSINPENFAIL 345

Query:   298 RALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQE 357
             + LLLKL++ I++VPI  ++ GFTKPGPYIYE+L  LNIT ETA KLI  VE AA  L+E
Sbjct:   346 KGLLLKLQELISKVPIPKRDEGFTKPGPYIYEMLKSLNITHETAPKLIGTVEEAAVFLEE 405

Query:   358 DKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLS 417
             +K Q   +    ++E I+++LK+IFR+ G+ H+  YRVHV+E + N+ DV+KGK SRTLS
Sbjct:   406 EK-QRTATNAGSKLEIIADMLKLIFRENGSNHADVYRVHVQELEQNSTDVMKGKVSRTLS 464

Query:   418 WWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAG 477
             WWCF+PGI M + ++  VGSIILTSGTLSPMDS AQELKL+FP+R+ENPHVI+S Q+WAG
Sbjct:   465 WWCFSPGITMLDIAQKGVGSIILTSGTLSPMDSLAQELKLDFPIRLENPHVISSNQLWAG 524

Query:   478 IVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWK 537
             +V  GPSGY+LNSSYRNRD  EYKQELGN IVN +R+VP+GLLIFFPSYYLMD CI  WK
Sbjct:   525 VVSTGPSGYVLNSSYRNRDVPEYKQELGNAIVNFSRVVPEGLLIFFPSYYLMDSCITFWK 584

Query:   538 NTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVS 597
             N  + N  T+WERICK KKPV+EP+ SSLFP A+ D+  KL+D +TSG VFFAVCRGKVS
Sbjct:   585 NGCYRNSMTVWERICKLKKPVIEPKDSSLFPAAMRDFSEKLQDRATSGVVFFAVCRGKVS 644

Query:   598 EGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWY 657
             EGLDFAD AGRAVVITG+P+A +TDP+V+LKRE+LD   QSQ  + K  + + LSG  WY
Sbjct:   645 EGLDFADGAGRAVVITGLPYARVTDPRVKLKREFLD--EQSQLADVKLPRSTLLSGSMWY 702

Query:   658 NQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVY 717
             +Q+A+RAVNQA+GRVIRHRHDYGAIIFCD+RF  PS++S+ISLWI+P+++CYS++G+V+ 
Sbjct:   703 SQEAARAVNQAIGRVIRHRHDYGAIIFCDDRFEQPSQQSKISLWIRPNVKCYSRYGEVIS 762

Query:   718 TLTRFFREER 727
              L RFFR ER
Sbjct:   763 DLARFFRTER 772
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0008026 "ATP-dependent helicase activity" evidence=IEA
GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA
GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
UNIPROTKB|Q16X92 AAEL008960 "Regulator of telomere elongation helicase 1 homolog" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
UNIPROTKB|E1BTS7 Gga.49055 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050306-11 rtel1 "regulator of telomere elongation helicase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BTS6 Gga.49055 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NE49 Gga.49055 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|B0W9F4 CPIJ003765 "Regulator of telomere elongation helicase 1 homolog" [Culex quinquefasciatus (taxid:7176)] Back     alignment and assigned GO terms
UNIPROTKB|B3NSW1 GG18780 "Regulator of telomere elongation helicase 1 homolog" [Drosophila erecta (taxid:7220)] Back     alignment and assigned GO terms
UNIPROTKB|Q7QEI1 AGAP000634 "Regulator of telomere elongation helicase 1 homolog" [Anopheles gambiae (taxid:7165)] Back     alignment and assigned GO terms
UNIPROTKB|B4PZB4 GE16425 "Regulator of telomere elongation helicase 1 homolog" [Drosophila yakuba (taxid:7245)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.120.824
3rd Layer3.6.40.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query758
TIGR00604705 TIGR00604, rad3, DNA repair helicase (rad3) 1e-119
COG1199654 COG1199, DinG, Rad3-related DNA helicases [Transcr 7e-77
pfam06733168 pfam06733, DEAD_2, DEAD_2 2e-59
smart00488289 smart00488, DEXDc2, DEAD-like helicases superfamil 2e-56
pfam13307165 pfam13307, Helicase_C_2, Helicase C-terminal domai 2e-49
smart00491142 smart00491, HELICc2, helicase superfamily c-termin 2e-40
TIGR01407850 TIGR01407, dinG_rel, DnaQ family exonuclease/DinG 3e-12
PRK11747697 PRK11747, dinG, ATP-dependent DNA helicase DinG; P 5e-05
PRK08074928 PRK08074, PRK08074, bifunctional ATP-dependent DNA 1e-04
PRK08074928 PRK08074, PRK08074, bifunctional ATP-dependent DNA 0.001
>gnl|CDD|233047 TIGR00604, rad3, DNA repair helicase (rad3) Back     alignment and domain information 
 Score =  374 bits (962), Expect = e-119
 Identities = 224/758 (29%), Positives = 341/758 (44%), Gaps = 111/758 (14%)

Query: 11  VEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTL 69
           V FP+E  Y  Q  YM  + +SL     A+LE P+GTGKT+ LL   LA+          
Sbjct: 4   VYFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAY---------- 53

Query: 70  GSQVNNQISGSQSSVNSSQSGDSKLPTILYTSRTHSQLRQVIQEL-KTSNYRPK------ 122
                             Q    ++  I+Y SRTHSQL Q  +EL K  +YR        
Sbjct: 54  ------------------QQEKPEVRKIIYASRTHSQLEQATEELRKLMSYRTPRIGEES 95

Query: 123 ---MVILGSREQLCIHREVSLLR-GSAQNNACRFL--CKKGTNRRCNHHSRVADYMKNNP 176
               + L SR+ LC+H EVS  R G   N  C  L   K    R    +    ++ +N  
Sbjct: 96  PVSGLSLASRKNLCLHPEVSKERQGKVVNGKCIKLTVSKIKEQRTEKPNVESCEFYENFD 155

Query: 177 HLGD-------EPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGL 229
            L +       E +DIEDLV  G   G CPYF TR++    +IV  PY YL+DP  R  +
Sbjct: 156 ELREVEDLLLSEIMDIEDLVEYGELLGLCPYFATRKMLPFANIVLLPYQYLLDPKIRSAV 215

Query: 230 GVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETL 289
            +E K+SI+IFDEAHNL+ +C  + S +LS   L  C  E             +  +E  
Sbjct: 216 SIELKDSIVIFDEAHNLDNVCISSLSSNLSVRSLKRCSKEIAEY--------FEKIEERK 267

Query: 290 NPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLAD-----LNITQ------ 338
             D    L   L KL + + +  + + E  F        E+L +     + I +      
Sbjct: 268 EVDA-RKLLDELQKLVEGLKQEDLLTDEDIFLANPVLPKEVLPEAVPGNIRIAEIFLHKL 326

Query: 339 -------ETAYK-LIDIVEVAAELLQ----EDKLQNKKSTTACRIESISNILKIIFRDKG 386
                  + A K L  + E+    L+    +  +       + R+ ++   L+I   +  
Sbjct: 327 SRYLEYLKDALKVLGVVSELPDAFLEHLKEKTFIDRPLRFCSERLSNLLRELEITHPEDF 386

Query: 387 TAHSAYYRVH-VREADANAADVL------KGKASRTLSWWCFNPGIAMQE-FSRLEVGSI 438
           +A    +    +     N           K   +  L + C +P IA++  F R  V S+
Sbjct: 387 SALVLLFTFATLVLTYTNGFLEGIEPYENKTVPNPILKFMCLDPSIALKPLFER--VRSV 444

Query: 439 ILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSI 498
           IL SGTLSP+D+F + L  N   +    H++  + +   IV  G     L+S++  R+  
Sbjct: 445 ILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDP 504

Query: 499 EYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV 558
              + LG  +V  ++I+PDG+++FFPSY  ++  ++ WK         I E I K K   
Sbjct: 505 SLVRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMG------ILENIEKKKLIF 558

Query: 559 VEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFA 618
           VE + +     A+E Y   +      GAV  +V  GKVSEG+DF D  GRAV++ G+P+ 
Sbjct: 559 VETKDAQETSDALERYKQAVS--EGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYE 616

Query: 619 TMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHD 678
                 +  + E+L  Q   +              +D+Y   A RAVNQA+GRVIRH+ D
Sbjct: 617 YTESRILLARLEFLRDQYPIRE------------NQDFYEFDAMRAVNQAIGRVIRHKDD 664

Query: 679 YGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVV 716
           YG+I+  D+R+A  +++ ++  WIQ  IQ     G  +
Sbjct: 665 YGSIVLLDKRYARSNKRKKLPKWIQDTIQSSDLNGMAI 702

All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 705
>gnl|CDD|224120 COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|219153 pfam06733, DEAD_2, DEAD_2 Back     alignment and domain information
>gnl|CDD|214693 smart00488, DEXDc2, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|222037 pfam13307, Helicase_C_2, Helicase C-terminal domain Back     alignment and domain information
>gnl|CDD|214694 smart00491, HELICc2, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|233398 TIGR01407, dinG_rel, DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>gnl|CDD|236966 PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>gnl|CDD|236148 PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>gnl|CDD|236148 PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 758
KOG1132 945 consensus Helicase of the DEAD superfamily [Replic 100.0
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 100.0
KOG1133821 consensus Helicase of the DEAD superfamily [Replic 100.0
KOG1131755 consensus RNA polymerase II transcription initiati 100.0
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 100.0
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 100.0
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 100.0
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 100.0
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 100.0
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 100.0
smart00488289 DEXDc2 DEAD-like helicases superfamily. 100.0
smart00489289 DEXDc3 DEAD-like helicases superfamily. 100.0
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 100.0
smart00491142 HELICc2 helicase superfamily c-terminal domain. 100.0
smart00492141 HELICc3 helicase superfamily c-terminal domain. 100.0
PF06733174 DEAD_2: DEAD_2; InterPro: IPR010614 This represent 99.96
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.65
PTZ00110545 helicase; Provisional 99.62
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.61
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.61
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 99.6
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.59
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.59
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.57
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.56
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.55
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 99.54
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 99.54
PTZ00424401 helicase 45; Provisional 99.54
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 99.52
PRK13767 876 ATP-dependent helicase; Provisional 99.51
PRK01172674 ski2-like helicase; Provisional 99.42
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.42
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.41
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.4
PRK02362737 ski2-like helicase; Provisional 99.39
PRK00254720 ski2-like helicase; Provisional 99.3
PRK09401 1176 reverse gyrase; Reviewed 99.29
PHA02558501 uvsW UvsW helicase; Provisional 99.28
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.24
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.24
PRK106891147 transcription-repair coupling factor; Provisional 99.19
PHA02653675 RNA helicase NPH-II; Provisional 99.18
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.14
PRK14701 1638 reverse gyrase; Provisional 99.13
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.11
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.1
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.08
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.07
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.05
TIGR03714 762 secA2 accessory Sec system translocase SecA2. Memb 99.02
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 98.99
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 98.98
TIGR00963 745 secA preprotein translocase, SecA subunit. The pro 98.94
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 98.93
PRK09200 790 preprotein translocase subunit SecA; Reviewed 98.93
smart00487201 DEXDc DEAD-like helicases superfamily. 98.82
TIGR00643630 recG ATP-dependent DNA helicase RecG. 98.79
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 98.64
PRK09694878 helicase Cas3; Provisional 98.61
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 98.49
COG1202 830 Superfamily II helicase, archaea-specific [General 98.48
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 98.36
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 98.35
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 98.34
COG1204766 Superfamily II helicase [General function predicti 98.32
PRK12904 830 preprotein translocase subunit SecA; Reviewed 98.3
PRK13766 773 Hef nuclease; Provisional 98.3
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 98.29
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 98.29
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 98.28
KOG0354746 consensus DEAD-box like helicase [General function 98.21
COG1205851 Distinct helicase family with a unique C-terminal 98.14
PRK12906 796 secA preprotein translocase subunit SecA; Reviewed 98.02
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 98.01
COG0556663 UvrB Helicase subunit of the DNA excision repair c 97.88
KOG0346569 consensus RNA helicase [RNA processing and modific 97.77
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 97.72
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 97.66
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 97.6
COG4889 1518 Predicted helicase [General function prediction on 97.55
COG1201814 Lhr Lhr-like helicases [General function predictio 97.48
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 97.4
PRK05580679 primosome assembly protein PriA; Validated 97.39
PF1324576 AAA_19: Part of AAA domain 97.31
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 97.28
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 97.25
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 97.2
PRK04914 956 ATP-dependent helicase HepA; Validated 97.18
KOG1803649 consensus DNA helicase [Replication, recombination 97.16
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 97.13
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 97.11
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 97.04
COG1200677 RecG RecG-like helicase [DNA replication, recombin 97.03
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 97.01
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 96.96
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 96.93
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 96.92
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 96.92
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 96.87
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 96.86
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 96.83
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 96.74
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 96.58
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 96.52
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 96.51
COG11971139 Mfd Transcription-repair coupling factor (superfam 96.51
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 96.39
smart0049082 HELICc helicase superfamily c-terminal domain. 96.36
COG4096875 HsdR Type I site-specific restriction-modification 96.32
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 96.31
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 96.27
KOG0334997 consensus RNA helicase [RNA processing and modific 96.26
TIGR00643630 recG ATP-dependent DNA helicase RecG. 96.21
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 96.15
KOG0343758 consensus RNA Helicase [RNA processing and modific 96.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 95.98
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 95.95
KOG18051100 consensus DNA replication helicase [Replication, r 95.92
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 95.83
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 95.81
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 95.65
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 95.53
PRK05298652 excinuclease ABC subunit B; Provisional 95.52
TIGR00595505 priA primosomal protein N'. All proteins in this f 95.49
PRK04914956 ATP-dependent helicase HepA; Validated 95.49
TIGR00376637 DNA helicase, putative. The gene product may repre 95.45
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 95.31
PRK10536262 hypothetical protein; Provisional 95.23
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 95.17
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 95.07
PRK15483 986 type III restriction-modification system StyLTI en 95.04
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 95.0
PRK13766773 Hef nuclease; Provisional 94.99
KOG0343 758 consensus RNA Helicase [RNA processing and modific 94.8
PRK13107 908 preprotein translocase subunit SecA; Reviewed 94.75
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 94.58
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 94.4
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 94.32
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 94.28
COG0610962 Type I site-specific restriction-modification syst 94.2
COG1204 766 Superfamily II helicase [General function predicti 93.93
PRK09694878 helicase Cas3; Provisional 93.92
PHA02244383 ATPase-like protein 93.91
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 93.44
PRK13531498 regulatory ATPase RavA; Provisional 93.27
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 93.11
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 92.93
COG0714329 MoxR-like ATPases [General function prediction onl 92.92
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 92.85
KOG0353695 consensus ATP-dependent DNA helicase [General func 92.68
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 92.59
KOG0387923 consensus Transcription-coupled repair protein CSB 92.56
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 92.46
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 92.44
PRK06835329 DNA replication protein DnaC; Validated 92.43
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 92.43
COG1205 851 Distinct helicase family with a unique C-terminal 92.29
PRK08181269 transposase; Validated 92.15
COG4096 875 HsdR Type I site-specific restriction-modification 91.83
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 91.79
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 91.31
COG1484254 DnaC DNA replication protein [DNA replication, rec 91.26
PRK12326 764 preprotein translocase subunit SecA; Reviewed 90.96
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 90.85
PRK13407334 bchI magnesium chelatase subunit I; Provisional 90.82
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 90.81
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 90.75
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 90.52
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 90.33
KOG1123776 consensus RNA polymerase II transcription initiati 89.93
COG4098441 comFA Superfamily II DNA/RNA helicase required for 89.76
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 89.69
TIGR00595505 priA primosomal protein N'. All proteins in this f 89.46
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 89.4
COG1198730 PriA Primosomal protein N' (replication factor Y) 89.3
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 89.2
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 89.06
KOG0327397 consensus Translation initiation factor 4F, helica 89.04
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 88.94
COG1201 814 Lhr Lhr-like helicases [General function predictio 88.94
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 88.88
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 88.83
PRK05298652 excinuclease ABC subunit B; Provisional 88.2
KOG0347731 consensus RNA helicase [RNA processing and modific 88.1
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309127 Torsin: Torsin; InterPro: IPR010448 This family co 88.09
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 87.76
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 87.69
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 87.66
KOG4284 980 consensus DEAD box protein [Transcription] 87.47
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 87.43
COG4098441 comFA Superfamily II DNA/RNA helicase required for 87.42
PRK08939306 primosomal protein DnaI; Reviewed 87.35
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 87.19
PRK12402337 replication factor C small subunit 2; Reviewed 87.04
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 87.0
PRK09183259 transposase/IS protein; Provisional 86.97
PRK13894319 conjugal transfer ATPase TrbB; Provisional 86.9
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 86.7
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 86.68
TIGR00390441 hslU ATP-dependent protease HslVU, ATPase subunit. 86.59
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 86.44
PRK06921266 hypothetical protein; Provisional 86.22
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 85.88
cd01124187 KaiC KaiC is a circadian clock protein primarily f 85.47
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 85.4
PF13191185 AAA_16: AAA ATPase domain; PDB: 2V1U_A. 85.34
COG4889 1518 Predicted helicase [General function prediction on 85.23
PRK13900332 type IV secretion system ATPase VirB11; Provisiona 85.11
PLN03025319 replication factor C subunit; Provisional 84.89
smart00382148 AAA ATPases associated with a variety of cellular 84.88
PRK12377248 putative replication protein; Provisional 84.83
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 84.82
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 84.75
PRK11331459 5-methylcytosine-specific restriction enzyme subun 84.71
TIGR00382413 clpX endopeptidase Clp ATP-binding regulatory subu 84.62
PRK13833323 conjugal transfer protein TrbB; Provisional 84.6
PRK06526254 transposase; Provisional 84.53
PRK07952244 DNA replication protein DnaC; Validated 84.39
KOG0347731 consensus RNA helicase [RNA processing and modific 84.36
PRK08116268 hypothetical protein; Validated 84.11
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 84.11
PRK13851344 type IV secretion system protein VirB11; Provision 83.65
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 83.54
KOG0744423 consensus AAA+-type ATPase [Posttranslational modi 83.49
PF07726131 AAA_3: ATPase family associated with various cellu 83.35
COG0514 590 RecQ Superfamily II DNA helicase [DNA replication, 83.25
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 83.14
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 83.08
PF02399824 Herpes_ori_bp: Origin of replication binding prote 83.04
TIGR00764608 lon_rel lon-related putative ATP-dependent proteas 82.94
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 82.75
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 82.53
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 82.47
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 82.21
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 82.21
PRK06067234 flagellar accessory protein FlaH; Validated 82.14
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 81.96
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 81.94
KOG0745564 consensus Putative ATP-dependent Clp-type protease 81.92
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 81.88
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 81.59
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 81.4
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 81.26
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 81.25
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 81.16
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 81.14
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 81.13
CHL00081350 chlI Mg-protoporyphyrin IX chelatase 81.05
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 80.99
COG0606490 Predicted ATPase with chaperone activity [Posttran 80.91
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 80.71
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 80.65
PRK08533230 flagellar accessory protein FlaH; Reviewed 80.61
COG4962355 CpaF Flp pilus assembly protein, ATPase CpaF [Intr 80.53
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 80.35
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 80.09
PF02534469 T4SS-DNA_transf: Type IV secretory system Conjugat 80.07
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 80.02
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-112  Score=937.19  Aligned_cols=710  Identities=48%  Similarity=0.826  Sum_probs=552.1

Q ss_pred             CCeeeEc-CeeecCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcc--cccccc-c-
Q 004379            1 MPTYKIR-GIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFST--LGSQVN-N-   75 (758)
Q Consensus         1 ~~~~~i~-~i~~~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~--~~~~~~-~-   75 (758)
                      |+.+.|+ |+.|.|||+||+.|+.||..|.++|+.+.++++|+||||||||++||++|+|++..+....  ..++++ . 
T Consensus         5 ~~~~~i~~Gv~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~   84 (945)
T KOG1132|consen    5 MPKIVINIGVPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGF   84 (945)
T ss_pred             CcceEeccCceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccc
Confidence            7888899 9999999999999999999999999999999999999999999999999999998763211  011111 0 


Q ss_pred             ------ccCCCCCCCC-CCCCCCCCCCeEEEeCCccchHHHHHHHhhcCCCCCceEEecCCcccccchhhhhccCc-chh
Q 004379           76 ------QISGSQSSVN-SSQSGDSKLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGS-AQN  147 (758)
Q Consensus        76 ------~~~~~~~~~~-~~~~~~~~~~kIi~~trT~sql~Q~i~eLkkl~~~~~~~~l~sr~~lCi~~~~~~~~~~-~~~  147 (758)
                            ...+..+... .+-......|+|+|+||||+|+.|+++|+++++|++++++||||.++|+|+.++.+.+. ..+
T Consensus        85 ~p~~~s~~~g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgSReq~Cinpev~k~~~~~~~~  164 (945)
T KOG1132|consen   85 IPTQPSDSGGEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGSREQLCINPEVKKLEGNALQN  164 (945)
T ss_pred             cCCCCccCCCCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeecchhhccCHHHhhhhcchhhh
Confidence                  0000000000 00001125899999999999999999999999999999999999999999999877654 347


Q ss_pred             HHHHHHhhcCCCCCCCCCcchhhhhhcCCCCCCCCCChhHHHHhcccCCCcchhhhhhhhcCccEEEecCccccChhhhh
Q 004379          148 NACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRK  227 (758)
Q Consensus       148 ~~c~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~di~~l~~~~~~~~~CpY~~~r~~~~~AdIIv~ny~yLl~~~~~~  227 (758)
                      +.|..+.+   ...|.|+..... .+..+.+..+++||||||+.|++...||||.+|++.++||||+||||||+||.+|+
T Consensus       165 ~~C~k~~~---~~~C~f~~~~~~-~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~  240 (945)
T KOG1132|consen  165 HVCKKLVK---SRSCHFYKIVEE-KSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRR  240 (945)
T ss_pred             hHHHhhcc---cccccccccccc-cccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhc
Confidence            88988876   789998754432 23344566779999999999999999999999999999999999999999999999


Q ss_pred             ccCCCccccEEEEeCCcchHHHHhhhcccccChhhHH---HHHHHHHHHHHHhhhc----cCCCCC-C---CCChhHHHH
Q 004379          228 GLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLT---ACISEAKNCIDISSTR----RGQSSD-E---TLNPDNFAI  296 (758)
Q Consensus       228 ~~~i~~~~~ilIiDEAHnL~d~~~~~~s~~is~~~l~---~~~~~l~~~~~~~~~~----~~~~~~-~---~~~~~~~~~  296 (758)
                      +++++++++|||||||||+|+.|++..|++++..+|.   .+.+++.+........    +.-.-+ .   ....+.++.
T Consensus       241 ~~~v~LknsIVIfDEAHNiEdic~esaS~~lts~~l~~~~~l~~e~~~~~~~~~~~~~pl~ev~~~l~s~l~~~~e~La~  320 (945)
T KOG1132|consen  241 SHKVDLKNSIVIFDEAHNIEDICRESASFDLTSSDLASGLELINELEQAVTKAAAIYEPLREVSLDLISWLELELEDLAK  320 (945)
T ss_pred             cccccccccEEEEeccccHHHHHhhcccccccHHHHHHHHHHHHHHHHHHhhhhhhcCchhhhhhccchhhhcchHHHHH
Confidence            8899999999999999999999999999999976665   4555555443222110    000000 0   123455666


Q ss_pred             HHHHHHHHHHHHHhCCCCcccCCCcCChh-hHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCcccchHHHHH
Q 004379          297 LRALLLKLEKRIAEVPINSKELGFTKPGP-YIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESIS  375 (758)
Q Consensus       297 l~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~  375 (758)
                      ++..+..++..++.+.......+++.++. .+++.+....++.+...++.+.+..+...++...+.... .......-+.
T Consensus       321 l~~~~~~~~~~~d~~~~~~~~~giT~~~~~~l~e~~~~a~~t~e~~~~i~~~~~~~v~~le~~~q~~~t-~~~s~~~~~~  399 (945)
T KOG1132|consen  321 LKEILLFLEEAIDKVLLPLDDSGITRPGSPILYEEFAKALITSETAEKIVDSLDIAVQHLEGEKQGTAT-NTGSLWCIFA  399 (945)
T ss_pred             HHHHHHHhhhhcchhccccccccccCCCcHHHHHHHHHhccCccccccchhhHHHHHHHhhcccccchh-cccchHHHHH
Confidence            66666666677776665555566666666 778888888887777777777776666666554331111 1111222245


Q ss_pred             HHHHHHHcc---CCCCCCcc-------eEEEEEEccc----chh--hhccCCC------CceEEEEecCchhhchhhhcc
Q 004379          376 NILKIIFRD---KGTAHSAY-------YRVHVREADA----NAA--DVLKGKA------SRTLSWWCFNPGIAMQEFSRL  433 (758)
Q Consensus       376 ~~l~~~~~~---~~~~~~~~-------y~~~~~~~~~----~~~--~~~~~~~------~~~l~~~~l~p~~~l~~~l~~  433 (758)
                      +++..++..   .....+..       |.+.-. ++.    +.+  +...++.      -+.+.+||++|+..|++++.+
T Consensus       400 dlld~~fs~~~~~g~~~~~~~~~~e~s~~~~~~-~d~~~~~~~~~~~v~~~~~s~~~~~~~vi~~wcf~p~~sf~d~~~k  478 (945)
T KOG1132|consen  400 DLLDISFSVILQNGSFSSDASFSVEQSYSFGNH-LDAPHVINANLGDVWKGKSSRKLGNYPVINFWCFSPGYSFRDLLGK  478 (945)
T ss_pred             HHHHHHhhccccCCccccchhhhhhhhhccccc-CCcccccccccccccccccccccCcccceeeeecCcchhHHHHhcc
Confidence            666666552   11101111       111000 000    001  0001111      134789999999999999986


Q ss_pred             cccEEEEecccCCChHhHHhhhCCCCCccccCCccccCCCeEEEEeecCCCCcceeeeccccCCHHHHHHHHHHHHHHhh
Q 004379          434 EVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIAR  513 (758)
Q Consensus       434 ~~~~vil~SaTL~p~~~f~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~r~~~~~~~~l~~~i~~~~~  513 (758)
                      ..++||||||||+|++.|..+||+++...+++||++...|+|+.+++.||.+..+.++|.++..++|..++++.|...++
T Consensus       479 ~vrsIiLtSGTLsP~~s~~~El~~~f~~~lEn~hii~~~qv~~~vv~~Gp~~~ql~sty~nr~~~ey~~~lg~~i~~v~r  558 (945)
T KOG1132|consen  479 GVRSIILTSGTLSPMDSFASELGLEFKIQLENPHIINKSQVWVGVVPKGPDGAQLDSTYGNRFTPEYLSELGEAILNVAR  558 (945)
T ss_pred             cceeEEEecccccCchhHHHHhCCccceeeecchhccccceEEEeeccCCCccccccccccccCHHHHHHHHHHHHHHHh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCCCChHHHHHHHHHHhccCCCCCeEEEEEec
Q 004379          514 IVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCR  593 (758)
Q Consensus       514 ~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~  593 (758)
                      ++|.|+|||||||.+|+++..+|+..      ++|+++...|.+++|++...++.+++..|.+++......|+++|+|||
T Consensus       559 vVp~G~L~FfPSY~vmdk~~tfw~~~------~~we~~~~vk~l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcR  632 (945)
T KOG1132|consen  559 VVPYGLLIFFPSYPVMDKLITFWQNR------GLWERMEKVKKLVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCR  632 (945)
T ss_pred             hcccceEEeccchHHHHHHHHHHHcc------hHHHHhhcccCceeccCCccchHHHHHHHHHHhhCccccceEEEEEec
Confidence            99999999999999999999999875      789999999999999999889999999999999854457899999999


Q ss_pred             CccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHHHHHHHHHhcCccc
Q 004379          594 GKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVI  673 (758)
Q Consensus       594 g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~a~~~~~QaiGRlI  673 (758)
                      |+.|||+||.|+..|+||++|||||+..||.|++|++|+|.+.+....+     .+.++|.+||..+|+|+||||+||+|
T Consensus       633 GKVSEGlDFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~-----s~~lsg~eWY~~qA~RAvNQAiGRvi  707 (945)
T KOG1132|consen  633 GKVSEGLDFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAK-----SQLLSGQEWYSQQAYRAVNQAIGRVI  707 (945)
T ss_pred             ccccCCCCccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccc-----cccccchHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999886543221     13589999999999999999999999


Q ss_pred             cCCCCeEEEEEeeccCCCccccccchhhhhhhhcccCchhHHHHHHHHHHHHhhh
Q 004379          674 RHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFREERI  728 (758)
Q Consensus       674 R~~~D~g~villD~R~~~~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~Ff~~~~~  728 (758)
                      ||++|||+++|+|.||.+.+-...+|+|++. ......--+++..+-.++.....
T Consensus       708 RHR~D~Gav~l~D~Rfe~~~~~~~lskw~r~-~~~~~~~~~~~~~~~r~~r~~~~  761 (945)
T KOG1132|consen  708 RHRNDYGAVILCDDRFENADARSQLSKWIRS-VKCDSRYCEVISSLARKFRTHRS  761 (945)
T ss_pred             hhhcccceeeEeechhhcCccccccchhhhc-cccccccccccchhhhhhhcccc
Confidence            9999999999999999998777779999998 33222222333334444444443

>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>PRK13900 type IV secretion system ATPase VirB11; Provisional Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>PRK13851 type IV secretion system protein VirB11; Provisional Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query758
4a15_A620 Crystal Structure Of An Xpd Dna Complex Length = 62 2e-20
2vsf_A602 Structure Of Xpd From Thermoplasma Acidophilum Leng 7e-20
2vl7_A540 Structure Of S. Tokodaii Xpd4 Length = 540 2e-06
3crv_A551 "xpd_helicase" Length = 551 2e-05
3crv_A551 "xpd_helicase" Length = 551 1e-04
>pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex Length = 620 Back     alignment and structure 
Iteration: 1

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 162/705 (22%), Positives = 262/705 (37%), Gaps = 153/705 (21%)
Query: 15  FEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLXXXXX 74
           +E    Q+  ++ +  SLQ      LESPTG+GKT+  L + L +               
Sbjct: 2   YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQY--------------- 46
Query: 75  XXXXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQELKT--SNYRPKMVILGSREQL 132
                             KL  +LY  RT+SQ  QVI+EL++  S  + + + +  R  +
Sbjct: 47  --------------SSERKL-KVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGRVNM 91
Query: 133 CI-HREVSLLRGSAQNNACRFLCKK------GTNRRCNHHSRVADYMKNNPHLGDEPIDI 185
           CI +R V  L      +  +F   K      G    C + +      +    L DE    
Sbjct: 92  CILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTA 151
Query: 186 EDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLID----PWFRKGLGVEWKNSILIFD 241
           E+  + G     CPY   +      DIV APY Y ++      F    GV     ++I D
Sbjct: 152 EEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILD 211
Query: 242 EAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALL 301
           EAHNL  I     SF +S   L     EA+   D   +++   SD         I  AL 
Sbjct: 212 EAHNLPDIGRSIGSFRISVESLNRADREAQAYGDPELSQKIHVSDLIE-----MIRSALQ 266
Query: 302 LKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYK-LIDIVEVAAELLQEDKL 360
             + +R  +  +  +   F        E +  +N   E   + L++ + +  E ++ +K 
Sbjct: 267 SMVSERCGKGDVRIRFQEFM-------EYMRIMNKRSEREIRSLLNYLYLFGEYVENEKE 319
Query: 361 QNKK------STTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASR 414
           +  K      S+ A RI        I F D+               +   A +L  +   
Sbjct: 320 KVGKVPFSYCSSVASRI--------IAFSDQD--------------EEKYAAILSPEDGG 357
Query: 415 TLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRV-------ENPH 467
            +   C +P   ++    L+    I  SGTL P D ++       P +        EN +
Sbjct: 358 YMQAACLDPSGILE---VLKESKTIHMSGTLDPFDFYSDITGFEIPFKKIGEIFPPENRY 414
Query: 468 VITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYY 527
           +      + G+          +S Y   D  E  + +   I +I   V    +++FPSY 
Sbjct: 415 I----AYYDGV----------SSKYDTLDEKELDR-MATVIEDIILKVKKNTIVYFPSYS 459
Query: 528 LMDQCIACWKNTSHGNLTTIWERIC-KHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGA 586
           LMD+               +  R+  +H K      Q  L+ +        LK       
Sbjct: 460 LMDR---------------VENRVSFEHMKEYRGIDQKELYSM--------LKKFRRDHG 496
Query: 587 VFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKET 646
             FAV  G++SEG++F  +    +++ G+PF     P   + R   D         Y E 
Sbjct: 497 TIFAVSGGRLSEGINFPGNELEMIILAGLPFPR---PDA-INRSLFD---------YYER 543
Query: 647 KLSFLSGEDW-YNQQASRAVN--QAVGRVIRHRHDYGAIIFCDER 688
           K     G+ W Y+     A+   Q +GR+IR   D GA +  D+R
Sbjct: 544 KY----GKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584
>pdb|2VSF|A Chain A, Structure Of Xpd From Thermoplasma Acidophilum Length = 602 Back     alignment and structure
>pdb|2VL7|A Chain A, Structure Of S. Tokodaii Xpd4 Length = 540 Back     alignment and structure
>pdb|3CRV|A Chain A, "xpd_helicase" Length = 551 Back     alignment and structure
>pdb|3CRV|A Chain A, "xpd_helicase" Length = 551 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query758
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 1e-152
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 1e-126
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 1e-125
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Length = 620 Back     alignment and structure
 Score =  456 bits (1175), Expect = e-152
 Identities = 135/726 (18%), Positives = 241/726 (33%), Gaps = 127/726 (17%)

Query: 15  FEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVN 74
           +E    Q+  ++ +  SLQ      LESPTG+GKT+  L + L +               
Sbjct: 2   YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE------------ 49

Query: 75  NQISGSQSSVNSSQSGDSKLPTILYTSRTHSQLRQVIQELKT--SNYRPKMVILGSREQL 132
                             +   +LY  RT+SQ  QVI+EL++  S  + + + +  R  +
Sbjct: 50  ------------------RKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGRVNM 91

Query: 133 CIHREV----SLLRGSAQNNACRFLCKK---GTNRRCNHHSRVADYMKNNPHLGDEPIDI 185
           CI   +      +   +    C    ++   G    C + +      +    L DE    
Sbjct: 92  CILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTA 151

Query: 186 EDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFR----KGLGVEWKNSILIFD 241
           E+  + G     CPY   +      DIV APY Y ++           GV     ++I D
Sbjct: 152 EEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILD 211

Query: 242 EAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALL 301
           EAHNL  I     SF +S   L     EA+   D   +++               +  L+
Sbjct: 212 EAHNLPDIGRSIGSFRISVESLNRADREAQAYGDPELSQKIH-------------VSDLI 258

Query: 302 LKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQ 361
             +   +    + S+  G         E +  + I  + + + I  +     L  E    
Sbjct: 259 EMIRSALQS--MVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVEN 316

Query: 362 NKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCF 421
            K+          S++   I          Y  +   E                +   C 
Sbjct: 317 EKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDG------------GYMQAACL 364

Query: 422 NPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPV 481
           +P   ++          I  SGTL P D ++       P + +   +   +  +      
Sbjct: 365 DPSGILEVLKE---SKTIHMSGTLDPFDFYSDITGFEIPFK-KIGEIFPPENRYIAYYDG 420

Query: 482 GPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSH 541
                 ++S Y   D  +    +   I +I   V    +++FPSY LMD+          
Sbjct: 421 ------VSSKYDTLDE-KELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS---- 469

Query: 542 GNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLD 601
                 +E + +++    +               + LK         FAV  G++SEG++
Sbjct: 470 ------FEHMKEYRGIDQKELY------------SMLKKFRRDHGTIFAVSGGRLSEGIN 511

Query: 602 FADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQA 661
           F  +    +++ G+PF    D   R   +Y +     + G+           E       
Sbjct: 512 FPGNELEMIILAGLPFP-RPDAINRSLFDYYE----RKYGK---------GWEYSVVYPT 557

Query: 662 SRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTR 721
           +  + Q +GR+IR   D GA +  D+R     +   I    +          D    +  
Sbjct: 558 AIKIRQEIGRLIRSAEDTGACVILDKRAGQFRKF--IPDMKKTS--------DPASDIYN 607

Query: 722 FFREER 727
           FF   +
Sbjct: 608 FFISAQ 613
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Length = 551 Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Length = 540 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query758
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 100.0
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 100.0
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 100.0
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 99.73
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 99.73
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 99.7
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 99.7
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 99.69
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 99.68
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 99.67
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 99.67
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 99.67
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 99.66
2v1x_A 591 ATP-dependent DNA helicase Q1; DNA strand annealin 99.64
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 99.63
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 99.62
1oyw_A 523 RECQ helicase, ATP-dependent DNA helicase; winged 99.62
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 99.62
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 99.61
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 99.56
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 99.54
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 99.49
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 99.47
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 99.46
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.45
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 99.44
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 99.43
4gl2_A699 Interferon-induced helicase C domain-containing P; 99.41
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 99.4
3h1t_A590 Type I site-specific restriction-modification syst 99.4
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 99.36
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 99.33
4f92_B1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.31
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.27
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 99.25
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 99.25
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.24
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 99.23
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.23
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 99.22
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 99.21
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 99.2
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.2
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 99.19
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 99.18
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 99.18
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.16
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 99.13
3bor_A237 Human initiation factor 4A-II; translation initiat 99.13
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 99.11
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 99.1
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.09
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 99.03
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 99.01
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 98.99
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 98.96
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 98.91
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 98.87
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 98.87
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 98.86
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 98.86
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 98.85
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 98.81
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 98.8
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 98.71
1nkt_A 922 Preprotein translocase SECA 1 subunit; preprotein 98.69
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 98.51
3jux_A 822 Protein translocase subunit SECA; protein transloc 98.49
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 98.3
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 98.3
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 98.17
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 98.06
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 97.91
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 97.9
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 97.88
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 97.86
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 97.82
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 97.78
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 97.77
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 97.77
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 97.61
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 97.59
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 97.55
1yks_A440 Genome polyprotein [contains: flavivirin protease 97.53
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 97.37
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 96.44
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 97.21
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 97.21
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 97.2
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 97.13
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 96.99
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 96.9
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 96.68
3rc3_A 677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 96.51
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 96.31
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 96.3
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 96.12
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 96.07
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 96.03
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 95.99
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 95.98
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 95.95
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 95.78
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 95.76
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 95.7
1yks_A440 Genome polyprotein [contains: flavivirin protease 95.61
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 95.57
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 95.55
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 95.51
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 95.4
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 95.18
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 95.11
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 94.86
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 94.54
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 94.52
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 92.71
2w00_A 1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 92.56
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 91.72
3co5_A143 Putative two-component system transcriptional RES 91.67
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 91.44
2r44_A331 Uncharacterized protein; putative ATPase, structur 91.43
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 91.09
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 90.65
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 90.36
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 90.24
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 90.05
3nbx_X500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 89.92
2fsf_A 853 Preprotein translocase SECA subunit; ATPase, DNA-R 89.77
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 89.73
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 88.98
2qgz_A308 Helicase loader, putative primosome component; str 88.75
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 88.49
1uaa_A673 REP helicase, protein (ATP-dependent DNA helicase 88.48
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 88.43
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 88.38
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 87.8
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 87.15
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 86.6
1pjr_A724 PCRA; DNA repair, DNA replication, SOS response, h 85.82
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 85.7
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 85.61
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 85.46
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 85.27
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 85.03
2chg_A226 Replication factor C small subunit; DNA-binding pr 84.89
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 84.3
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 83.09
3bos_A242 Putative DNA replication factor; P-loop containing 83.08
1ojl_A304 Transcriptional regulatory protein ZRAR; response 82.02
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 81.96
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 81.81
2c9o_A456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 81.71
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 81.46
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 81.43
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 80.48
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 80.37
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 80.02
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
Probab=100.00  E-value=3.1e-89  Score=791.88  Aligned_cols=596  Identities=22%  Similarity=0.309  Sum_probs=418.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCC
Q 004379           15 FEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKL   94 (758)
Q Consensus        15 f~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (758)
                      |+|||+|++||++|++++.+|+++++|||||||||+|||+|++.|+...+                              
T Consensus         2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~------------------------------   51 (620)
T 4a15_A            2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK------------------------------   51 (620)
T ss_dssp             ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC------------------------------
Confidence            78999999999999999999999999999999999999999999987643                              


Q ss_pred             CeEEEeCCccchHHHHHHHhhcCCC--CCceEEecCCccccc-chhhhhccCcchhH---HHHHHhhc---CCCCCCCCC
Q 004379           95 PTILYTSRTHSQLRQVIQELKTSNY--RPKMVILGSREQLCI-HREVSLLRGSAQNN---ACRFLCKK---GTNRRCNHH  165 (758)
Q Consensus        95 ~kIi~~trT~sql~Q~i~eLkkl~~--~~~~~~l~sr~~lCi-~~~~~~~~~~~~~~---~c~~l~~~---~~~~~c~~~  165 (758)
                      ++|+|+|+|++|+.|++++++++..  .+++++++||..+|+ ++.+..+.+...++   .|+.+.+.   .....|+|+
T Consensus        52 ~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~  131 (620)
T 4a15_A           52 LKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYF  131 (620)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHHHhhccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcc
Confidence            4899999999999999999887632  678899999988999 99876655444444   78876541   113689998


Q ss_pred             cchhhhhhcC-CCCCCCCCChhHHHHhcccCCCcchhhhhhhhcCccEEEecCccccChhhhhc----cCCCccccEEEE
Q 004379          166 SRVADYMKNN-PHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKG----LGVEWKNSILIF  240 (758)
Q Consensus       166 ~~~~~~~~~~-~~~~~~~~di~~l~~~~~~~~~CpY~~~r~~~~~AdIIv~ny~yLl~~~~~~~----~~i~~~~~ilIi  240 (758)
                      .+.+. ..+. ..+...++|+|++++.|+.++.||||.+|+.+..|||||+||+||||+.+++.    ++++++++++||
T Consensus       132 ~~~~~-~gd~~~~l~~~~~die~l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~  210 (620)
T 4a15_A          132 NFKIR-SDETKRFLFDELPTAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIIL  210 (620)
T ss_dssp             SGGGG-CHHHHHHHHHHCCCHHHHHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEE
T ss_pred             cccCc-ccchhHHhccCCCCHHHHHHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEE
Confidence            76532 1000 00112457999999999999999999999999999999999999999998743    457899999999


Q ss_pred             eCCcchHHHHhhhcccccChhhHHHHHHHHHHHHHHhhhccCCCCCCCCChhHHHHHHHHHHHHHHHHHhCCCCcccCCC
Q 004379          241 DEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGF  320 (758)
Q Consensus       241 DEAHnL~d~~~~~~s~~is~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~  320 (758)
                      ||||||+|+|++++|.++|...+..+.+++.+......  .       ........+..+...++..+..+... .....
T Consensus       211 DEAHNL~d~a~~~~S~~ls~~~l~~~~~~l~~~~~~~~--~-------~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~  280 (620)
T 4a15_A          211 DEAHNLPDIGRSIGSFRISVESLNRADREAQAYGDPEL--S-------QKIHVSDLIEMIRSALQSMVSERCGK-GDVRI  280 (620)
T ss_dssp             TTGGGHHHHHHHHHCEEEEHHHHHHHHHHHHHTTCCEE--E-------TTEEHHHHHHHHHHHHHHHHHHHCSS-SCEEE
T ss_pred             ECCCchHHHHHHhhcceeCHHHHHHHHHHHHHHHhhhh--h-------hhHHHHHHHHHHHHHHHHHHHHhhcc-cccCC
Confidence            99999999999999999999999999888765421100  0       00001111222222233333332211 00000


Q ss_pred             cCChhhHHHHHHH-cCCChhhHHHHHHHHHHHHHHHHHhhhhcccCcccchHHHHHHHHHHHHccCCCCCCcceEEEEEE
Q 004379          321 TKPGPYIYELLAD-LNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVRE  399 (758)
Q Consensus       321 ~~~~~~~~~~l~~-~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~y~~~~~~  399 (758)
                        ....+...+.. .+.....+..+.+.+..+.+.+.+... .........+..+.+++..+. ...   ...|..|+..
T Consensus       281 --~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~fl~~~~-~~~---~~~~~~~~~~  353 (620)
T 4a15_A          281 --RFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEKE-KVGKVPFSYCSSVASRIIAFS-DQD---EEKYAAILSP  353 (620)
T ss_dssp             --CTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH-HTTSCCCCHHHHHHHHHHHHH-TSC---TTTEEEEEEC
T ss_pred             --ChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHhhcc-ccccccccHHHHHHHHHHHHh-hcC---CCCEEEEEEe
Confidence              01122222222 233223333333333333332222211 112233455677778887772 211   1124444420


Q ss_pred             cccchhhhccCCCCceEEEEecCchhhchhhhcccccEEEEecccCCChHhHHhhhCCCCCccccCCccccCCCeEEEEe
Q 004379          400 ADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIV  479 (758)
Q Consensus       400 ~~~~~~~~~~~~~~~~l~~~~l~p~~~l~~~l~~~~~~vil~SaTL~p~~~f~~~lGl~~~~~~~~~~~~~~~~~~~~~~  479 (758)
                                 ..+..|+++|++|+..|+ ++  +++++|||||||+|+++|.+.||++ ...+..+++|+.++..++++
T Consensus       354 -----------~~~~~l~~~~l~~~~~l~-~~--~~~~~il~SaTL~p~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~  418 (620)
T 4a15_A          354 -----------EDGGYMQAACLDPSGILE-VL--KESKTIHMSGTLDPFDFYSDITGFE-IPFKKIGEIFPPENRYIAYY  418 (620)
T ss_dssp             -----------GGGCEEEEEECCTHHHHG-GG--GGSEEEEEESSCCSHHHHHHHHCCC-CCEEECCCCSCGGGEEEEEE
T ss_pred             -----------CCCcEEEEEECCHHHHHH-HH--hCCeEEEEccCCCcHHHHHHHhCCC-ceeeecCCCCCHHHeEEEEe
Confidence                       123679999999999999 65  8999999999999999999999998 55566677777666655543


Q ss_pred             ecCCCCcceeeeccccCCHHHHHHHHHHHHHHhhhcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCee
Q 004379          480 PVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVV  559 (758)
Q Consensus       480 ~~~~~~~~l~~~y~~r~~~~~~~~l~~~i~~~~~~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~  559 (758)
                       .+     ++++|++|+ +.+.+++++.|.++++.+|||+|||||||++|+++++.|+ ...            .+    
T Consensus       419 -~~-----~~~~~~~r~-~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~-~~~------------~~----  474 (620)
T 4a15_A          419 -DG-----VSSKYDTLD-EKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS-FEH------------MK----  474 (620)
T ss_dssp             -CC-----C-------C-HHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC-SCC------------EE----
T ss_pred             -CC-----CCCcCCCCC-HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH-hcc------------hh----
Confidence             32     456777765 5677899999999999999999999999999999999887 210            11    


Q ss_pred             CCCCC--CChHHHHHHHHHHhccCCCCCeEEEEEecCccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhh
Q 004379          560 EPRQS--SLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQ  637 (758)
Q Consensus       560 e~~~~--~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~  637 (758)
                      +.++.  .+..+++++|+       ++++|||||+||+|||||||+|+.+++|||+|||||+| ||.+++|++|++++++
T Consensus       475 ~~q~~~~~~~~~ll~~f~-------~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~g  546 (620)
T 4a15_A          475 EYRGIDQKELYSMLKKFR-------RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRP-DAINRSLFDYYERKYG  546 (620)
T ss_dssp             CCTTCCSHHHHHHHHHHT-------TSCCEEEEETTSCC--------CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHHS
T ss_pred             ccCCCChhHHHHHHHHhc-------cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCC-CHHHHHHHHHHHHhhC
Confidence            33332  24678888887       25899999999999999999999999999999999999 5999999999999876


Q ss_pred             ccCCCccccccccCCcchhHHHHHHHHHHHhcCccccCCCCeEEEEEeeccCCCccccccchhhhhhhhcccCchhHHHH
Q 004379          638 SQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVY  717 (758)
Q Consensus       638 ~~f~~~~~~~~~~l~~~~~y~~~a~~~~~QaiGRlIR~~~D~g~villD~R~~~~~y~~~l~~~l~~~~~~~~~~~~~~~  717 (758)
                      ++|.            .++..| |+++++||+||+|||++|+|+|+|+|+||  ++|++.||+ ++...   .    ...
T Consensus       547 ~~~~------------~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~llD~R~--~~~~~~LP~-~~~~~---~----~~~  603 (620)
T 4a15_A          547 KGWE------------YSVVYP-TAIKIRQEIGRLIRSAEDTGACVILDKRA--GQFRKFIPD-MKKTS---D----PAS  603 (620)
T ss_dssp             CHHH------------HHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEECGGG--GGGGGGSTT-CEEES---C----HHH
T ss_pred             CCch------------HHhHHH-HHHHHHHHhCccccCCCceEEEEEEccch--HHHHHhCCc-hhhhc---C----cHH
Confidence            5431            012345 99999999999999999999999999999  788888887 54322   2    234


Q ss_pred             HHHHHHHHhhh
Q 004379          718 TLTRFFREERI  728 (758)
Q Consensus       718 ~~~~Ff~~~~~  728 (758)
                      ++.+||.....
T Consensus       604 ~~~~f~~~~~~  614 (620)
T 4a15_A          604 DIYNFFISAQA  614 (620)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHhChhh
Confidence            68899977643
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query758
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.05
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.01
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.0
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 98.99
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 98.96
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 98.96
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 98.94
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 98.91
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.8
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 98.72
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 98.71
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 98.69
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 98.69
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 98.61
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 98.61
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 98.58
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 98.46
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 98.28
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 98.2
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 98.1
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 97.92
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 97.85
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 97.83
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 97.82
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 97.82
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 97.78
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 97.54
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 97.48
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 97.41
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 97.39
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 97.32
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 96.85
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 96.8
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 96.5
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 96.5
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 96.3
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 95.25
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 94.26
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 94.17
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 94.0
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 93.19
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 93.12
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 92.79
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 91.62
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 91.2
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 91.02
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 90.95
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 89.82
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 89.81
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 89.76
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 88.77
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 88.56
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 88.44
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 87.96
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 87.92
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 87.77
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 86.89
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 86.59
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 86.59
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 85.46
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 85.34
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 85.32
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 85.13
d1okkd2207 GTPase domain of the signal recognition particle r 84.81
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 83.87
d1svma_362 Papillomavirus large T antigen helicase domain {Si 83.47
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 82.68
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 82.5
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 82.27
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 81.87
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 81.4
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 81.33
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 80.63
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 80.13
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.05  E-value=1.9e-10  Score=111.09  Aligned_cols=67  Identities=24%  Similarity=0.247  Sum_probs=53.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCC
Q 004379           15 FEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKL   94 (758)
Q Consensus        15 f~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (758)
                      ++||+.|.+.++.+.     ++++++.||||+|||++++.++.......+                              
T Consensus         8 ~~pr~~Q~~~~~~~~-----~~n~lv~~pTGsGKT~i~~~~~~~~~~~~~------------------------------   52 (200)
T d1wp9a1           8 IQPRIYQEVIYAKCK-----ETNCLIVLPTGLGKTLIAMMIAEYRLTKYG------------------------------   52 (200)
T ss_dssp             HCCCHHHHHHHHHGG-----GSCEEEECCTTSCHHHHHHHHHHHHHHHSC------------------------------
T ss_pred             CCCCHHHHHHHHHHh-----cCCeEEEeCCCCcHHHHHHHHHHHHHHhcC------------------------------
Confidence            479999999877652     457899999999999988877665544432                              


Q ss_pred             CeEEEeCCccchHHHHHHHhhc
Q 004379           95 PTILYTSRTHSQLRQVIQELKT  116 (758)
Q Consensus        95 ~kIi~~trT~sql~Q~i~eLkk  116 (758)
                      .+++|.++|..+.+|..+++++
T Consensus        53 ~~il~i~P~~~L~~q~~~~~~~   74 (200)
T d1wp9a1          53 GKVLMLAPTKPLVLQHAESFRR   74 (200)
T ss_dssp             SCEEEECSSHHHHHHHHHHHHH
T ss_pred             CcEEEEcCchHHHHHHHHHHHH
Confidence            3689999999999999988875
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure